Query 000914
Match_columns 1226
No_of_seqs 641 out of 3837
Neff 5.7
Searched_HMMs 46136
Date Tue Apr 2 00:41:40 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 6.6E-65 1.4E-69 587.9 37.1 544 446-1201 182-780 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 2.1E-60 4.5E-65 559.6 31.0 478 462-1197 190-681 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 7.7E-55 1.7E-59 487.0 27.0 378 833-1217 6-386 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 4E-51 8.6E-56 513.2 38.5 538 449-1212 173-730 (733)
5 KOG0736 Peroxisome assembly fa 100.0 4.9E-50 1.1E-54 474.2 39.3 438 665-1197 479-939 (953)
6 KOG0738 AAA+-type ATPase [Post 100.0 9.6E-46 2.1E-50 412.7 23.5 284 917-1213 205-490 (491)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-44 2.5E-49 403.1 23.9 247 918-1193 145-395 (406)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 3E-44 6.5E-49 416.8 23.7 296 920-1218 186-521 (802)
9 COG0464 SpoVK ATPases of the A 100.0 3.4E-42 7.4E-47 415.2 32.6 453 619-1195 19-488 (494)
10 KOG0735 AAA+-type ATPase [Post 100.0 5.5E-40 1.2E-44 385.8 32.8 330 775-1153 563-894 (952)
11 KOG0739 AAA+-type ATPase [Post 100.0 2.4E-41 5.3E-46 366.3 18.4 299 911-1215 120-439 (439)
12 KOG0741 AAA+-type ATPase [Post 100.0 1.1E-38 2.4E-43 365.3 20.6 370 681-1141 326-720 (744)
13 KOG0734 AAA+-type ATPase conta 100.0 3.6E-37 7.8E-42 353.2 20.8 250 917-1197 297-548 (752)
14 CHL00195 ycf46 Ycf46; Provisio 100.0 1.4E-35 3E-40 354.2 33.0 411 664-1211 67-484 (489)
15 KOG0740 AAA+-type ATPase [Post 100.0 3.4E-36 7.4E-41 348.1 18.7 279 919-1215 148-427 (428)
16 KOG0652 26S proteasome regulat 100.0 1.4E-35 3E-40 316.6 18.7 243 919-1191 166-413 (424)
17 KOG0728 26S proteasome regulat 100.0 3.9E-34 8.4E-39 304.2 20.7 243 920-1191 143-389 (404)
18 KOG0727 26S proteasome regulat 100.0 3.8E-34 8.3E-39 304.5 20.3 245 917-1190 148-396 (408)
19 KOG0726 26S proteasome regulat 100.0 8.8E-35 1.9E-39 314.6 14.1 243 920-1191 181-427 (440)
20 COG1223 Predicted ATPase (AAA+ 100.0 1E-33 2.3E-38 302.9 18.7 242 920-1194 117-359 (368)
21 KOG0731 AAA+-type ATPase conta 100.0 2E-33 4.3E-38 341.1 22.8 248 917-1194 304-557 (774)
22 KOG0730 AAA+-type ATPase [Post 100.0 6.3E-34 1.4E-38 336.4 17.5 263 920-1219 181-445 (693)
23 PTZ00454 26S protease regulato 100.0 6.1E-33 1.3E-37 325.2 24.6 246 918-1192 139-388 (398)
24 KOG0729 26S proteasome regulat 100.0 7.2E-33 1.6E-37 296.6 16.4 248 918-1194 171-422 (435)
25 PRK03992 proteasome-activating 100.0 4.3E-32 9.2E-37 318.4 24.4 250 919-1197 126-379 (389)
26 PTZ00361 26 proteosome regulat 100.0 3.1E-31 6.7E-36 312.9 22.4 245 919-1192 178-426 (438)
27 TIGR01241 FtsH_fam ATP-depende 100.0 7.3E-31 1.6E-35 317.0 24.3 269 917-1215 48-320 (495)
28 COG0465 HflB ATP-dependent Zn 100.0 4E-31 8.6E-36 316.9 20.2 251 918-1198 144-398 (596)
29 TIGR01243 CDC48 AAA family ATP 100.0 4.7E-30 1E-34 323.1 22.8 289 919-1218 173-463 (733)
30 TIGR01242 26Sp45 26S proteasom 100.0 3.6E-29 7.8E-34 291.5 23.4 244 918-1190 116-363 (364)
31 TIGR03689 pup_AAA proteasome A 100.0 1.2E-28 2.6E-33 294.7 25.4 272 918-1216 176-503 (512)
32 CHL00176 ftsH cell division pr 100.0 1.2E-28 2.5E-33 303.0 22.5 243 918-1190 177-423 (638)
33 KOG0651 26S proteasome regulat 100.0 7.1E-29 1.5E-33 271.9 13.7 243 920-1191 128-374 (388)
34 KOG0732 AAA+-type ATPase conta 100.0 2.7E-28 5.9E-33 302.7 18.6 266 918-1197 259-532 (1080)
35 PRK10733 hflB ATP-dependent me 100.0 1.3E-27 2.8E-32 296.1 23.8 250 917-1196 145-398 (644)
36 KOG0732 AAA+-type ATPase conta 99.9 5.9E-28 1.3E-32 299.8 10.9 452 446-1109 257-728 (1080)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 8E-27 1.7E-31 298.9 20.3 188 952-1147 1624-1860(2281)
38 KOG0741 AAA+-type ATPase [Post 99.9 8.9E-27 1.9E-31 268.0 12.7 264 920-1197 215-497 (744)
39 PLN00020 ribulose bisphosphate 99.9 7.4E-25 1.6E-29 248.9 20.4 188 956-1147 145-354 (413)
40 KOG0737 AAA+-type ATPase [Post 99.9 3.4E-25 7.4E-30 249.3 9.6 233 433-859 71-316 (386)
41 KOG0738 AAA+-type ATPase [Post 99.9 3.8E-24 8.1E-29 240.4 11.7 249 447-891 205-471 (491)
42 KOG0736 Peroxisome assembly fa 99.9 7.7E-23 1.7E-27 244.3 16.3 249 960-1218 432-682 (953)
43 COG1222 RPT1 ATP-dependent 26S 99.9 4.6E-23 1E-27 231.0 12.4 234 447-890 144-393 (406)
44 PRK11034 clpA ATP-dependent Cl 99.9 1E-19 2.2E-24 227.8 32.8 387 664-1147 266-718 (758)
45 TIGR02639 ClpA ATP-dependent C 99.9 1.2E-19 2.7E-24 228.7 33.4 383 664-1147 262-714 (731)
46 KOG0735 AAA+-type ATPase [Post 99.9 1.8E-21 3.8E-26 230.7 14.4 261 924-1218 408-677 (952)
47 CHL00181 cbbX CbbX; Provisiona 99.8 4E-19 8.7E-24 201.1 19.4 237 925-1186 24-282 (287)
48 TIGR02881 spore_V_K stage V sp 99.8 7.1E-19 1.5E-23 196.3 16.5 216 923-1150 5-244 (261)
49 TIGR02880 cbbX_cfxQ probable R 99.8 1.3E-18 2.8E-23 196.8 18.6 237 925-1186 23-281 (284)
50 KOG0739 AAA+-type ATPase [Post 99.8 1.5E-19 3.3E-24 197.5 7.8 222 435-852 115-348 (439)
51 KOG0744 AAA+-type ATPase [Post 99.8 1.4E-18 3E-23 192.2 12.4 197 911-1109 129-342 (423)
52 KOG0742 AAA+-type ATPase [Post 99.8 6.3E-18 1.4E-22 190.8 17.0 207 922-1139 353-587 (630)
53 TIGR03345 VI_ClpV1 type VI sec 99.8 1.8E-16 3.9E-21 202.1 32.5 207 924-1147 566-833 (852)
54 PF00004 AAA: ATPase family as 99.8 3.6E-18 7.8E-23 168.4 12.4 130 962-1093 1-132 (132)
55 CHL00095 clpC Clp protease ATP 99.8 2.6E-16 5.6E-21 201.0 32.5 204 924-1147 509-784 (821)
56 TIGR03346 chaperone_ClpB ATP-d 99.7 5.4E-16 1.2E-20 198.7 32.7 211 924-1148 565-829 (852)
57 PRK10865 protein disaggregatio 99.7 1E-15 2.2E-20 195.7 33.1 172 924-1109 568-781 (857)
58 COG0464 SpoVK ATPases of the A 99.7 5.5E-17 1.2E-21 196.6 18.3 249 942-1218 2-252 (494)
59 KOG0734 AAA+-type ATPase conta 99.7 8.8E-18 1.9E-22 194.7 10.3 221 439-856 289-523 (752)
60 COG0542 clpA ATP-binding subun 99.7 1.4E-15 3.1E-20 187.7 26.1 163 924-1109 491-707 (786)
61 CHL00195 ycf46 Ycf46; Provisio 99.7 9.4E-17 2E-21 193.0 13.1 219 442-856 216-446 (489)
62 PF05496 RuvB_N: Holliday junc 99.7 4.1E-16 8.8E-21 168.5 14.0 198 920-1140 20-225 (233)
63 TIGR02639 ClpA ATP-dependent C 99.7 8.2E-16 1.8E-20 194.4 18.4 185 921-1130 179-386 (731)
64 KOG0743 AAA+-type ATPase [Post 99.7 1E-15 2.3E-20 177.4 16.8 220 920-1150 197-429 (457)
65 COG2256 MGS1 ATPase related to 99.7 3.7E-15 8E-20 170.3 19.8 182 920-1142 20-218 (436)
66 KOG0740 AAA+-type ATPase [Post 99.6 4.6E-16 1E-20 181.5 12.3 213 450-856 149-373 (428)
67 KOG0731 AAA+-type ATPase conta 99.6 2.9E-16 6.4E-21 192.4 11.0 217 446-858 303-537 (774)
68 TIGR00635 ruvB Holliday juncti 99.6 1E-14 2.2E-19 165.8 21.0 199 922-1143 2-208 (305)
69 CHL00206 ycf2 Ycf2; Provisiona 99.6 5.7E-16 1.2E-20 200.6 11.4 132 662-858 1718-1861(2281)
70 PRK00080 ruvB Holliday junctio 99.6 2.9E-14 6.3E-19 164.4 24.1 201 921-1144 22-230 (328)
71 KOG0726 26S proteasome regulat 99.6 3.9E-16 8.5E-21 170.6 7.1 228 451-888 182-425 (440)
72 PTZ00454 26S protease regulato 99.6 1.1E-15 2.3E-20 180.2 11.2 216 446-857 137-369 (398)
73 PRK03992 proteasome-activating 99.6 2.5E-15 5.4E-20 177.2 12.4 234 447-891 124-374 (389)
74 TIGR00763 lon ATP-dependent pr 99.6 2E-14 4.4E-19 182.8 19.0 213 925-1149 321-559 (775)
75 PRK11034 clpA ATP-dependent Cl 99.6 2.5E-14 5.4E-19 179.8 17.8 197 922-1142 184-407 (758)
76 TIGR02902 spore_lonB ATP-depen 99.6 3.7E-14 8E-19 173.2 17.9 201 920-1145 61-313 (531)
77 TIGR03345 VI_ClpV1 type VI sec 99.6 1E-13 2.3E-18 177.0 21.1 185 921-1130 184-391 (852)
78 TIGR01241 FtsH_fam ATP-depende 99.5 6.9E-15 1.5E-19 178.5 8.9 216 444-856 45-277 (495)
79 COG2255 RuvB Holliday junction 99.5 9.3E-14 2E-18 152.8 16.1 189 920-1130 22-218 (332)
80 PRK12323 DNA polymerase III su 99.5 1.3E-13 2.9E-18 167.6 18.7 185 920-1141 12-230 (700)
81 PRK14956 DNA polymerase III su 99.5 1.8E-13 3.9E-18 163.0 19.3 185 920-1141 14-227 (484)
82 KOG0728 26S proteasome regulat 99.5 2.5E-14 5.3E-19 153.9 9.2 209 452-856 145-370 (404)
83 KOG0652 26S proteasome regulat 99.5 3.3E-14 7.2E-19 153.6 10.0 214 448-857 165-395 (424)
84 KOG2028 ATPase related to the 99.5 4.4E-13 9.6E-18 150.5 18.6 212 920-1194 134-372 (554)
85 PTZ00361 26 proteosome regulat 99.5 2.9E-14 6.2E-19 169.5 9.2 214 449-858 178-408 (438)
86 PRK07003 DNA polymerase III su 99.5 4E-13 8.6E-18 165.2 18.8 185 920-1141 12-225 (830)
87 PRK10865 protein disaggregatio 99.5 2E-13 4.3E-18 174.9 17.0 183 921-1128 175-380 (857)
88 CHL00095 clpC Clp protease ATP 99.5 3E-13 6.6E-18 173.1 18.6 185 921-1130 176-382 (821)
89 TIGR03346 chaperone_ClpB ATP-d 99.5 4.7E-13 1E-17 171.8 19.3 184 921-1129 170-376 (852)
90 PRK14949 DNA polymerase III su 99.5 9.6E-13 2.1E-17 164.5 20.4 185 920-1141 12-225 (944)
91 CHL00176 ftsH cell division pr 99.5 6.8E-14 1.5E-18 173.2 10.0 219 443-857 172-406 (638)
92 COG0465 HflB ATP-dependent Zn 99.5 6.8E-14 1.5E-18 169.4 9.5 217 446-860 142-376 (596)
93 KOG0727 26S proteasome regulat 99.5 1.9E-13 4.2E-18 147.2 11.4 217 445-856 146-378 (408)
94 PRK13342 recombination factor 99.5 2.2E-12 4.8E-17 153.5 21.5 182 920-1142 8-202 (413)
95 KOG2004 Mitochondrial ATP-depe 99.5 6.4E-13 1.4E-17 159.4 16.5 174 924-1109 411-598 (906)
96 PRK14962 DNA polymerase III su 99.5 1.6E-12 3.6E-17 156.4 20.2 184 920-1140 10-222 (472)
97 PRK14960 DNA polymerase III su 99.5 1.4E-12 2.9E-17 159.3 19.6 186 920-1142 11-225 (702)
98 PRK14961 DNA polymerase III su 99.5 1.6E-12 3.4E-17 152.3 19.6 186 920-1142 12-226 (363)
99 PRK07994 DNA polymerase III su 99.5 1.5E-12 3.3E-17 160.5 19.9 185 920-1141 12-225 (647)
100 PRK14958 DNA polymerase III su 99.5 1.5E-12 3.4E-17 158.0 19.6 187 920-1143 12-227 (509)
101 KOG0729 26S proteasome regulat 99.5 7.2E-14 1.6E-18 151.4 7.1 214 448-856 171-400 (435)
102 PRK00149 dnaA chromosomal repl 99.5 2.7E-12 5.8E-17 154.4 20.9 168 960-1141 149-327 (450)
103 PRK05342 clpX ATP-dependent pr 99.4 2.3E-12 5E-17 152.7 18.7 226 922-1147 68-381 (412)
104 TIGR00390 hslU ATP-dependent p 99.4 2.2E-12 4.7E-17 150.9 17.7 178 925-1103 13-342 (441)
105 TIGR00362 DnaA chromosomal rep 99.4 5.2E-12 1.1E-16 149.9 21.3 169 960-1142 137-316 (405)
106 PRK04195 replication factor C 99.4 2.7E-12 5.9E-17 155.6 19.1 187 920-1137 10-204 (482)
107 TIGR02928 orc1/cdc6 family rep 99.4 1.1E-11 2.5E-16 144.2 23.1 202 924-1146 15-256 (365)
108 PRK06645 DNA polymerase III su 99.4 4E-12 8.6E-17 153.9 19.4 186 920-1142 17-235 (507)
109 PLN03025 replication factor C 99.4 4.1E-12 9E-17 146.2 18.7 181 920-1138 9-202 (319)
110 PRK14964 DNA polymerase III su 99.4 4.1E-12 8.9E-17 152.8 19.3 186 920-1142 9-223 (491)
111 PRK08691 DNA polymerase III su 99.4 5.2E-12 1.1E-16 155.5 20.0 186 920-1142 12-226 (709)
112 PRK07940 DNA polymerase III su 99.4 5.1E-12 1.1E-16 149.1 17.9 192 922-1138 3-216 (394)
113 PRK05201 hslU ATP-dependent pr 99.4 3.4E-12 7.5E-17 149.3 16.2 178 925-1103 16-344 (443)
114 PRK14951 DNA polymerase III su 99.4 7.4E-12 1.6E-16 154.2 19.8 187 920-1143 12-232 (618)
115 COG0466 Lon ATP-dependent Lon 99.4 4.4E-12 9.4E-17 153.5 17.3 172 925-1108 324-509 (782)
116 PRK10733 hflB ATP-dependent me 99.4 6.8E-13 1.5E-17 165.6 10.5 219 442-857 140-375 (644)
117 PRK00411 cdc6 cell division co 99.4 1.6E-11 3.4E-16 144.7 21.4 202 923-1145 29-263 (394)
118 TIGR01242 26Sp45 26S proteasom 99.4 8E-13 1.7E-17 154.7 10.1 74 447-526 115-188 (364)
119 PRK14969 DNA polymerase III su 99.4 1E-11 2.2E-16 151.8 19.2 185 920-1141 12-225 (527)
120 PRK12422 chromosomal replicati 99.4 1.4E-11 3.1E-16 147.5 19.9 215 959-1212 141-366 (445)
121 PRK07764 DNA polymerase III su 99.4 1.1E-11 2.4E-16 157.2 19.3 184 920-1140 11-225 (824)
122 PRK14957 DNA polymerase III su 99.4 1.6E-11 3.4E-16 149.6 19.8 185 920-1141 12-225 (546)
123 PRK12402 replication factor C 99.4 1.9E-11 4.1E-16 140.5 19.1 188 920-1139 11-229 (337)
124 PRK05563 DNA polymerase III su 99.4 1.7E-11 3.6E-16 150.8 19.7 184 920-1140 12-224 (559)
125 PRK14963 DNA polymerase III su 99.4 1.6E-11 3.5E-16 149.0 19.2 185 920-1141 10-222 (504)
126 PLN00020 ribulose bisphosphate 99.4 1.9E-12 4.2E-17 148.4 10.4 205 452-853 113-350 (413)
127 PF05673 DUF815: Protein of un 99.4 1.8E-11 3.9E-16 134.3 17.4 190 920-1139 23-244 (249)
128 PHA02544 44 clamp loader, smal 99.4 2.5E-11 5.4E-16 138.9 19.6 157 920-1108 17-174 (316)
129 PRK13341 recombination factor 99.4 2.3E-11 4.9E-16 152.8 20.7 182 920-1142 24-223 (725)
130 TIGR03420 DnaA_homol_Hda DnaA 99.4 4.3E-11 9.4E-16 130.0 20.1 185 921-1142 12-207 (226)
131 TIGR02397 dnaX_nterm DNA polym 99.3 2.2E-11 4.9E-16 141.1 18.9 186 920-1142 10-224 (355)
132 PRK14959 DNA polymerase III su 99.3 2E-11 4.3E-16 149.8 19.0 180 920-1135 12-220 (624)
133 PRK08903 DnaA regulatory inact 99.3 6.7E-11 1.5E-15 129.3 21.3 178 920-1139 14-202 (227)
134 KOG0651 26S proteasome regulat 99.3 3.8E-12 8.1E-17 141.4 11.4 212 450-856 128-355 (388)
135 KOG0989 Replication factor C, 99.3 1.7E-11 3.7E-16 136.5 15.7 185 920-1138 32-233 (346)
136 PRK14952 DNA polymerase III su 99.3 3.2E-11 7E-16 148.1 19.8 184 920-1140 9-223 (584)
137 TIGR00382 clpX endopeptidase C 99.3 2.5E-11 5.5E-16 143.4 18.1 221 926-1146 79-386 (413)
138 PRK14086 dnaA chromosomal repl 99.3 4.9E-11 1.1E-15 145.8 21.0 166 960-1140 315-492 (617)
139 PRK08084 DNA replication initi 99.3 9.2E-11 2E-15 129.6 21.2 183 920-1139 18-212 (235)
140 PRK05896 DNA polymerase III su 99.3 4.3E-11 9.3E-16 146.2 19.7 184 920-1140 12-224 (605)
141 PRK14965 DNA polymerase III su 99.3 4E-11 8.6E-16 148.1 19.1 182 920-1138 12-222 (576)
142 PRK10787 DNA-binding ATP-depen 99.3 2.9E-11 6.2E-16 153.5 18.2 210 925-1147 323-558 (784)
143 TIGR02640 gas_vesic_GvpN gas v 99.3 5E-11 1.1E-15 133.8 18.0 141 960-1107 22-198 (262)
144 PTZ00112 origin recognition co 99.3 4.3E-11 9.2E-16 147.8 18.4 196 924-1141 755-986 (1164)
145 TIGR03689 pup_AAA proteasome A 99.3 2.2E-11 4.9E-16 147.0 15.4 71 446-523 174-245 (512)
146 CHL00081 chlI Mg-protoporyphyr 99.3 4.6E-11 1E-15 138.5 17.3 167 920-1107 13-232 (350)
147 PRK06647 DNA polymerase III su 99.3 6.5E-11 1.4E-15 145.4 19.6 184 920-1140 12-224 (563)
148 COG1223 Predicted ATPase (AAA+ 99.3 7.9E-12 1.7E-16 135.8 10.1 207 450-856 117-337 (368)
149 PRK06305 DNA polymerase III su 99.3 8.5E-11 1.8E-15 141.3 20.1 184 920-1140 13-226 (451)
150 PRK14088 dnaA chromosomal repl 99.3 4.2E-11 9.1E-16 143.6 17.4 168 960-1140 131-309 (440)
151 PRK08727 hypothetical protein; 99.3 2.9E-10 6.4E-15 125.5 22.4 146 960-1128 42-197 (233)
152 PRK14087 dnaA chromosomal repl 99.3 1.6E-10 3.6E-15 138.8 21.9 169 960-1143 142-326 (450)
153 PRK06893 DNA replication initi 99.3 2E-10 4.3E-15 126.5 20.7 157 960-1138 40-205 (229)
154 PRK07133 DNA polymerase III su 99.3 9.7E-11 2.1E-15 145.6 19.8 190 920-1140 14-223 (725)
155 PRK14953 DNA polymerase III su 99.3 9.8E-11 2.1E-15 141.8 19.2 185 920-1141 12-225 (486)
156 PRK13407 bchI magnesium chelat 99.3 4.8E-11 1E-15 137.9 15.6 167 920-1108 4-217 (334)
157 PRK14970 DNA polymerase III su 99.3 1.3E-10 2.9E-15 136.0 19.5 184 920-1140 13-213 (367)
158 PRK09111 DNA polymerase III su 99.3 1E-10 2.3E-15 144.3 19.4 191 920-1141 20-238 (598)
159 COG3829 RocR Transcriptional r 99.3 5.9E-12 1.3E-16 149.2 7.6 202 920-1142 241-477 (560)
160 TIGR02903 spore_lon_C ATP-depe 99.3 1.6E-10 3.4E-15 143.7 20.5 231 920-1190 150-430 (615)
161 PRK08451 DNA polymerase III su 99.3 1.6E-10 3.4E-15 140.4 19.4 188 920-1144 10-226 (535)
162 COG2812 DnaX DNA polymerase II 99.2 3.8E-11 8.2E-16 144.3 13.6 193 920-1143 12-227 (515)
163 PRK14955 DNA polymerase III su 99.2 2.2E-10 4.7E-15 135.9 19.0 184 920-1140 12-232 (397)
164 COG2204 AtoC Response regulato 99.2 3.2E-11 6.9E-16 143.2 11.4 207 922-1149 139-379 (464)
165 PRK14948 DNA polymerase III su 99.2 2.2E-10 4.7E-15 142.3 19.2 182 920-1138 12-224 (620)
166 PRK06620 hypothetical protein; 99.2 4.5E-10 9.7E-15 122.6 18.9 143 960-1139 45-192 (214)
167 COG1221 PspF Transcriptional r 99.2 2.8E-11 6E-16 141.5 10.0 206 921-1147 75-312 (403)
168 COG3604 FhlA Transcriptional r 99.2 5.3E-11 1.1E-15 139.6 12.2 201 920-1144 219-456 (550)
169 PRK05642 DNA replication initi 99.2 7.2E-10 1.6E-14 122.5 20.3 157 960-1139 46-211 (234)
170 cd00009 AAA The AAA+ (ATPases 99.2 1.7E-10 3.6E-15 113.7 13.2 141 928-1092 2-150 (151)
171 PRK00440 rfc replication facto 99.2 4.3E-10 9.3E-15 128.2 18.4 184 920-1141 13-208 (319)
172 PRK14950 DNA polymerase III su 99.2 4.6E-10 1E-14 139.2 19.2 183 920-1139 12-224 (585)
173 PF00308 Bac_DnaA: Bacterial d 99.2 5.5E-10 1.2E-14 122.3 17.5 168 960-1141 35-213 (219)
174 PRK14954 DNA polymerase III su 99.2 6.6E-10 1.4E-14 137.5 20.1 182 920-1138 12-230 (620)
175 TIGR02030 BchI-ChlI magnesium 99.2 4.9E-10 1.1E-14 129.9 17.2 164 922-1107 2-219 (337)
176 PHA02244 ATPase-like protein 99.2 4E-10 8.6E-15 130.5 15.9 136 960-1103 120-269 (383)
177 TIGR01650 PD_CobS cobaltochela 99.2 1.6E-10 3.5E-15 132.4 12.1 143 960-1108 65-234 (327)
178 TIGR02974 phageshock_pspF psp 99.2 2.4E-10 5.1E-15 132.4 13.7 197 927-1144 2-233 (329)
179 TIGR02442 Cob-chelat-sub cobal 99.1 5.5E-10 1.2E-14 139.6 16.3 165 922-1108 2-215 (633)
180 PRK11608 pspF phage shock prot 99.1 3.3E-10 7.2E-15 131.0 13.2 200 923-1143 5-239 (326)
181 PF00498 FHA: FHA domain; Int 99.1 2.6E-10 5.6E-15 101.6 8.5 67 154-224 1-68 (68)
182 KOG0615 Serine/threonine prote 99.1 8.7E-11 1.9E-15 134.7 6.4 111 132-243 44-165 (475)
183 COG0542 clpA ATP-binding subun 99.1 8E-10 1.7E-14 137.5 15.3 182 922-1128 168-372 (786)
184 PRK14971 DNA polymerase III su 99.1 2.6E-09 5.6E-14 132.8 19.7 183 920-1139 13-225 (614)
185 PRK15424 propionate catabolism 99.1 5.9E-10 1.3E-14 136.1 13.6 202 921-1143 216-464 (538)
186 TIGR02329 propionate_PrpR prop 99.1 4.2E-10 9E-15 137.4 12.1 202 921-1143 209-449 (526)
187 TIGR01817 nifA Nif-specific re 99.1 2.8E-10 6.1E-15 139.8 10.6 210 920-1150 192-434 (534)
188 PRK09087 hypothetical protein; 99.1 4.1E-09 8.8E-14 116.1 18.0 137 960-1127 45-187 (226)
189 COG0593 DnaA ATPase involved i 99.1 7.7E-09 1.7E-13 121.6 21.2 168 959-1141 113-291 (408)
190 KOG0991 Replication factor C, 99.1 1.5E-09 3.2E-14 116.9 13.7 187 920-1140 23-219 (333)
191 PRK11388 DNA-binding transcrip 99.0 4.7E-10 1E-14 140.6 10.8 203 921-1144 322-554 (638)
192 COG0714 MoxR-like ATPases [Gen 99.0 8.9E-10 1.9E-14 127.5 12.3 157 926-1107 26-203 (329)
193 PRK15429 formate hydrogenlyase 99.0 1.7E-09 3.6E-14 136.8 15.7 205 921-1146 373-611 (686)
194 PRK05022 anaerobic nitric oxid 99.0 1.2E-09 2.5E-14 133.7 13.8 204 922-1146 185-422 (509)
195 COG2607 Predicted ATPase (AAA+ 99.0 5.7E-09 1.2E-13 113.2 16.9 191 920-1140 56-277 (287)
196 cd00060 FHA Forkhead associate 99.0 1.2E-09 2.5E-14 103.7 10.1 97 134-234 1-101 (102)
197 COG1474 CDC6 Cdc6-related prot 99.0 9.4E-09 2E-13 120.6 19.6 199 925-1147 18-248 (366)
198 smart00350 MCM minichromosome 99.0 4E-09 8.7E-14 128.9 17.2 175 925-1109 204-402 (509)
199 PRK10820 DNA-binding transcrip 99.0 1.2E-09 2.7E-14 133.7 12.8 206 920-1146 200-439 (520)
200 PRK05564 DNA polymerase III su 99.0 1.1E-08 2.3E-13 117.7 19.0 172 922-1130 2-185 (313)
201 PRK09112 DNA polymerase III su 99.0 8.5E-09 1.8E-13 120.4 17.9 188 920-1139 19-243 (351)
202 COG1224 TIP49 DNA helicase TIP 99.0 2.2E-08 4.8E-13 113.6 18.4 129 1019-1191 292-433 (450)
203 PRK07471 DNA polymerase III su 99.0 1.3E-08 2.7E-13 119.6 17.2 181 920-1133 15-236 (365)
204 TIGR02031 BchD-ChlD magnesium 99.0 6.2E-09 1.4E-13 129.1 15.4 142 959-1108 16-175 (589)
205 PF01078 Mg_chelatase: Magnesi 99.0 3.7E-10 7.9E-15 121.7 3.9 46 922-983 1-46 (206)
206 COG1239 ChlI Mg-chelatase subu 98.9 1.4E-08 3.1E-13 118.3 16.6 167 921-1109 14-234 (423)
207 PF07728 AAA_5: AAA domain (dy 98.9 2.1E-10 4.6E-15 115.7 1.4 112 961-1085 1-139 (139)
208 smart00382 AAA ATPases associa 98.9 4.5E-09 9.8E-14 102.2 10.6 127 960-1094 3-147 (148)
209 PF00158 Sigma54_activat: Sigm 98.9 1.1E-09 2.4E-14 115.3 6.6 128 926-1073 1-143 (168)
210 COG1219 ClpX ATP-dependent pro 98.9 5.7E-09 1.2E-13 116.8 11.8 109 926-1036 63-180 (408)
211 TIGR00678 holB DNA polymerase 98.9 1.8E-08 3.8E-13 107.3 15.0 144 958-1128 13-184 (188)
212 PRK13531 regulatory ATPase Rav 98.9 3.6E-08 7.9E-13 118.0 19.2 160 925-1106 21-193 (498)
213 PF07726 AAA_3: ATPase family 98.9 6.6E-10 1.4E-14 111.2 3.5 120 961-1085 1-129 (131)
214 KOG0745 Putative ATP-dependent 98.9 2E-08 4.4E-13 116.0 15.9 72 960-1031 227-304 (564)
215 KOG1969 DNA replication checkp 98.9 1.7E-08 3.8E-13 122.5 15.7 164 961-1141 328-512 (877)
216 TIGR00764 lon_rel lon-related 98.9 3.3E-08 7.1E-13 123.0 18.6 50 921-986 15-64 (608)
217 TIGR03015 pepcterm_ATPase puta 98.9 8.2E-08 1.8E-12 107.2 19.9 192 960-1191 44-267 (269)
218 PRK07399 DNA polymerase III su 98.9 2.2E-08 4.7E-13 115.4 14.5 181 922-1135 2-221 (314)
219 PRK11331 5-methylcytosine-spec 98.9 2E-08 4.4E-13 119.2 14.6 143 923-1093 174-357 (459)
220 TIGR02915 PEP_resp_reg putativ 98.8 1.1E-08 2.4E-13 122.6 11.3 202 924-1146 139-374 (445)
221 PF06068 TIP49: TIP49 C-termin 98.8 8.9E-08 1.9E-12 110.5 16.6 95 1019-1131 279-386 (398)
222 PRK04132 replication factor C 98.8 4.6E-08 9.9E-13 124.3 15.5 160 957-1140 562-735 (846)
223 TIGR00368 Mg chelatase-related 98.8 2.1E-08 4.6E-13 121.8 11.5 153 921-1097 189-394 (499)
224 COG0470 HolB ATPase involved i 98.8 3.5E-08 7.6E-13 112.6 12.6 147 925-1102 2-176 (325)
225 COG1220 HslU ATP-dependent pro 98.8 5.5E-08 1.2E-12 109.7 13.6 85 1019-1104 251-346 (444)
226 PRK05707 DNA polymerase III su 98.8 9.4E-08 2E-12 110.9 15.8 151 958-1131 21-199 (328)
227 PF07724 AAA_2: AAA domain (Cd 98.8 2.1E-08 4.6E-13 105.9 9.4 114 958-1074 2-130 (171)
228 PRK08058 DNA polymerase III su 98.8 1.8E-07 4E-12 108.6 17.3 148 922-1104 3-179 (329)
229 PRK10923 glnG nitrogen regulat 98.7 7.4E-08 1.6E-12 116.4 13.9 203 923-1146 137-373 (469)
230 PTZ00111 DNA replication licen 98.7 5.1E-08 1.1E-12 123.3 10.5 187 904-1108 439-658 (915)
231 PRK11361 acetoacetate metaboli 98.7 1.5E-07 3.3E-12 113.1 13.9 177 960-1145 167-377 (457)
232 KOG1514 Origin recognition com 98.6 1.1E-06 2.3E-11 107.4 18.9 229 925-1194 397-659 (767)
233 PF05621 TniB: Bacterial TniB 98.6 1E-06 2.2E-11 100.0 17.7 177 960-1147 62-272 (302)
234 COG3283 TyrR Transcriptional r 98.6 1.8E-07 3.9E-12 106.2 11.3 202 920-1142 200-430 (511)
235 PRK15115 response regulator Gl 98.6 3.2E-07 6.9E-12 110.1 14.2 177 960-1145 158-368 (444)
236 TIGR00602 rad24 checkpoint pro 98.6 6.2E-07 1.3E-11 111.6 16.5 194 920-1136 80-324 (637)
237 KOG2035 Replication factor C, 98.6 1.4E-06 3.1E-11 96.5 17.0 183 921-1134 10-227 (351)
238 PRK06871 DNA polymerase III su 98.6 1.5E-06 3.3E-11 100.5 17.8 164 929-1130 7-198 (325)
239 KOG2227 Pre-initiation complex 98.6 3.1E-06 6.7E-11 99.6 20.0 237 925-1195 151-420 (529)
240 PRK07993 DNA polymerase III su 98.6 1.4E-06 3E-11 101.4 17.3 153 957-1133 22-202 (334)
241 smart00763 AAA_PrkA PrkA AAA d 98.5 8.7E-07 1.9E-11 103.1 14.6 63 922-992 48-118 (361)
242 PRK08116 hypothetical protein; 98.5 4.6E-07 9.9E-12 102.4 11.9 162 911-1096 72-251 (268)
243 PRK12377 putative replication 98.5 5.1E-07 1.1E-11 100.9 11.9 109 908-1030 58-175 (248)
244 TIGR01818 ntrC nitrogen regula 98.5 4E-07 8.6E-12 109.8 11.7 205 925-1150 135-373 (463)
245 PF13177 DNA_pol3_delta2: DNA 98.5 5.7E-07 1.2E-11 94.2 11.1 133 928-1093 1-160 (162)
246 PRK08769 DNA polymerase III su 98.5 2.8E-06 6.1E-11 98.2 16.9 171 929-1134 9-207 (319)
247 TIGR03354 VI_FHA type VI secre 98.5 2.2E-07 4.8E-12 110.1 7.9 82 146-232 18-103 (396)
248 KOG0742 AAA+-type ATPase [Post 98.5 8.4E-07 1.8E-11 102.1 11.4 141 664-849 430-587 (630)
249 PRK06964 DNA polymerase III su 98.4 2E-06 4.4E-11 100.2 14.5 133 957-1106 19-203 (342)
250 COG0606 Predicted ATPase with 98.4 9E-08 2E-12 113.0 3.1 48 920-983 175-222 (490)
251 PRK10365 transcriptional regul 98.4 6.6E-07 1.4E-11 107.1 10.3 176 960-1144 163-372 (441)
252 PRK09862 putative ATP-dependen 98.4 3.2E-07 6.9E-12 111.5 7.5 153 921-1097 188-391 (506)
253 PRK07952 DNA replication prote 98.4 1.3E-06 2.8E-11 97.4 11.7 108 909-1030 57-174 (244)
254 PF00004 AAA: ATPase family as 98.4 1.3E-06 2.8E-11 86.2 10.4 36 495-532 1-36 (132)
255 PRK13765 ATP-dependent proteas 98.4 1.8E-06 3.8E-11 107.8 13.4 48 921-984 28-75 (637)
256 PF14532 Sigma54_activ_2: Sigm 98.4 2.2E-07 4.7E-12 94.4 4.2 106 960-1095 22-137 (138)
257 PRK06090 DNA polymerase III su 98.4 9E-06 2E-10 94.0 17.7 144 929-1105 8-178 (319)
258 PRK13406 bchD magnesium chelat 98.4 2.9E-06 6.3E-11 105.1 13.6 131 960-1098 26-173 (584)
259 COG1241 MCM2 Predicted ATPase 98.3 2.8E-06 6E-11 105.7 13.0 189 903-1110 274-486 (682)
260 KOG1051 Chaperone HSP104 and r 98.3 1.2E-05 2.7E-10 102.1 18.1 127 925-1073 563-710 (898)
261 PF01637 Arch_ATPase: Archaeal 98.3 2.7E-06 5.8E-11 91.6 9.3 180 927-1130 2-229 (234)
262 KOG0990 Replication factor C, 98.3 2.7E-06 5.9E-11 96.1 9.3 158 919-1110 36-206 (360)
263 KOG1942 DNA helicase, TBP-inte 98.2 1.1E-05 2.4E-10 89.8 13.4 91 1018-1126 296-400 (456)
264 PRK08181 transposase; Validate 98.2 2.9E-06 6.2E-11 96.0 9.1 69 960-1030 107-179 (269)
265 KOG2680 DNA helicase TIP49, TB 98.2 3.2E-05 6.9E-10 86.6 15.7 112 1018-1147 288-412 (454)
266 PRK08699 DNA polymerase III su 98.2 9.4E-06 2E-10 94.3 11.8 132 957-1105 19-183 (325)
267 PF03215 Rad17: Rad17 cell cyc 98.2 4E-05 8.6E-10 94.0 17.3 196 920-1136 15-264 (519)
268 COG3284 AcoR Transcriptional a 98.1 4.3E-06 9.4E-11 101.8 8.4 174 960-1143 337-539 (606)
269 PF00493 MCM: MCM2/3/5 family 98.1 4.1E-07 8.9E-12 105.7 -0.5 175 925-1110 25-224 (331)
270 KOG0478 DNA replication licens 98.1 1.3E-05 2.7E-10 97.7 11.8 174 925-1108 430-627 (804)
271 PRK06835 DNA replication prote 98.1 6.2E-06 1.3E-10 95.8 8.9 111 960-1085 184-305 (329)
272 PF13173 AAA_14: AAA domain 98.1 1E-05 2.2E-10 81.2 8.7 69 960-1030 3-73 (128)
273 KOG0482 DNA replication licens 98.1 1E-05 2.2E-10 95.4 9.3 225 902-1147 329-592 (721)
274 PRK08939 primosomal protein Dn 98.0 1.6E-05 3.4E-10 91.7 10.2 70 959-1030 156-229 (306)
275 KOG0744 AAA+-type ATPase [Post 98.0 8.2E-06 1.8E-10 92.2 7.3 75 442-521 130-204 (423)
276 PF01695 IstB_IS21: IstB-like 98.0 4.5E-06 9.8E-11 88.9 5.1 70 958-1029 46-119 (178)
277 smart00240 FHA Forkhead associ 98.0 8E-06 1.7E-10 68.7 5.4 50 154-207 1-52 (52)
278 PRK06526 transposase; Provisio 98.0 6.1E-06 1.3E-10 92.7 6.0 70 959-1030 98-171 (254)
279 PLN02927 antheraxanthin epoxid 98.0 1.1E-05 2.3E-10 101.4 8.4 84 143-231 545-642 (668)
280 PF13401 AAA_22: AAA domain; P 98.0 2.9E-05 6.3E-10 77.0 9.7 72 960-1031 5-100 (131)
281 COG1484 DnaC DNA replication p 98.0 2.4E-05 5.2E-10 88.0 9.5 70 959-1030 105-179 (254)
282 KOG0480 DNA replication licens 98.0 7E-05 1.5E-09 90.8 13.4 215 902-1141 332-571 (764)
283 PRK09183 transposase/IS protei 97.9 2.3E-05 4.9E-10 88.3 8.5 71 959-1030 102-176 (259)
284 PRK06921 hypothetical protein; 97.9 2E-05 4.3E-10 89.2 8.1 68 959-1029 117-188 (266)
285 PF12775 AAA_7: P-loop contain 97.9 2.4E-05 5.3E-10 88.7 8.3 139 960-1109 34-195 (272)
286 PF05729 NACHT: NACHT domain 97.9 8.1E-05 1.8E-09 76.1 10.8 140 961-1109 2-165 (166)
287 cd01120 RecA-like_NTPases RecA 97.9 6.5E-05 1.4E-09 76.2 9.7 71 962-1032 2-99 (165)
288 COG4650 RtcR Sigma54-dependent 97.9 2.8E-05 6E-10 86.6 7.2 132 960-1101 209-366 (531)
289 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00011 2.3E-09 81.6 11.5 137 960-1112 33-182 (231)
290 COG1716 FOG: FHA domain [Signa 97.8 8.4E-05 1.8E-09 79.1 9.7 82 146-236 83-165 (191)
291 PRK05917 DNA polymerase III su 97.8 0.00028 6.2E-09 80.6 14.2 121 957-1094 17-154 (290)
292 PF00931 NB-ARC: NB-ARC domain 97.7 0.00028 6.1E-09 79.5 12.6 157 958-1136 18-202 (287)
293 PRK07276 DNA polymerase III su 97.6 0.0015 3.3E-08 74.8 17.0 154 957-1137 22-198 (290)
294 KOG0477 DNA replication licens 97.6 6.8E-05 1.5E-09 90.5 6.2 171 902-1091 436-629 (854)
295 PRK07132 DNA polymerase III su 97.6 0.002 4.4E-08 74.2 17.5 125 959-1105 18-160 (299)
296 KOG1970 Checkpoint RAD17-RFC c 97.6 0.0026 5.7E-08 76.8 18.3 197 921-1136 79-316 (634)
297 COG5271 MDN1 AAA ATPase contai 97.5 0.00021 4.5E-09 92.7 9.2 138 960-1108 1544-1704(4600)
298 CHL00181 cbbX CbbX; Provisiona 97.5 0.00061 1.3E-08 78.1 12.2 131 680-860 123-260 (287)
299 COG1618 Predicted nucleotide k 97.5 0.00057 1.2E-08 71.3 10.6 25 959-983 5-29 (179)
300 PRK05818 DNA polymerase III su 97.5 0.00098 2.1E-08 75.0 13.4 122 956-1094 4-147 (261)
301 KOG1881 Anion exchanger adapto 97.5 0.00035 7.6E-09 85.7 10.0 88 151-241 176-272 (793)
302 KOG2228 Origin recognition com 97.4 0.00054 1.2E-08 78.4 10.0 161 925-1107 25-219 (408)
303 COG3267 ExeA Type II secretory 97.4 0.003 6.4E-08 70.5 15.1 174 961-1146 53-255 (269)
304 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.00047 1E-08 81.4 9.4 103 956-1074 59-168 (362)
305 KOG0479 DNA replication licens 97.4 0.00067 1.4E-08 81.7 9.7 172 925-1108 302-499 (818)
306 KOG1051 Chaperone HSP104 and r 97.3 0.0012 2.7E-08 84.5 12.5 139 960-1109 209-365 (898)
307 PF00910 RNA_helicase: RNA hel 97.3 0.0005 1.1E-08 67.1 6.8 23 962-984 1-23 (107)
308 TIGR02881 spore_V_K stage V sp 97.3 0.0024 5.2E-08 72.0 12.9 34 483-518 33-66 (261)
309 KOG2170 ATPase of the AAA+ sup 97.3 0.0052 1.1E-07 69.8 14.8 131 925-1074 83-225 (344)
310 PLN03210 Resistant to P. syrin 97.2 0.003 6.4E-08 85.2 15.4 171 922-1128 182-388 (1153)
311 PF14516 AAA_35: AAA-like doma 97.2 0.0043 9.4E-08 72.5 14.7 164 958-1129 30-233 (331)
312 cd01124 KaiC KaiC is a circadi 97.2 0.0016 3.4E-08 68.7 10.0 71 962-1032 2-109 (187)
313 TIGR02237 recomb_radB DNA repa 97.2 0.0013 2.7E-08 71.2 9.4 74 959-1032 12-111 (209)
314 TIGR01618 phage_P_loop phage n 97.2 0.00085 1.8E-08 74.0 7.9 76 955-1032 8-95 (220)
315 KOG0481 DNA replication licens 97.2 0.00094 2E-08 79.5 8.2 173 925-1107 332-528 (729)
316 KOG1968 Replication factor C, 97.2 0.00064 1.4E-08 87.5 7.4 161 962-1141 360-533 (871)
317 COG3456 Predicted component of 97.1 0.00049 1.1E-08 80.6 5.6 76 149-234 23-101 (430)
318 PHA02624 large T antigen; Prov 97.1 0.00048 1E-08 84.7 5.4 118 960-1093 432-561 (647)
319 PHA00729 NTP-binding motif con 97.1 0.00096 2.1E-08 73.7 7.2 28 960-987 18-45 (226)
320 PRK00771 signal recognition pa 97.1 0.032 6.8E-07 67.7 20.4 200 958-1192 94-334 (437)
321 PF13207 AAA_17: AAA domain; P 97.1 0.00047 1E-08 67.7 4.1 31 962-992 2-32 (121)
322 PF05707 Zot: Zonular occluden 97.0 0.0011 2.3E-08 71.5 6.7 121 962-1092 3-144 (193)
323 PF03266 NTPase_1: NTPase; In 97.0 0.00036 7.8E-09 73.9 2.9 23 961-983 1-23 (168)
324 TIGR02880 cbbX_cfxQ probable R 97.0 0.0044 9.5E-08 71.0 11.5 84 679-800 121-210 (284)
325 cd01121 Sms Sms (bacterial rad 97.0 0.0034 7.4E-08 74.5 10.5 96 958-1053 81-195 (372)
326 PRK11823 DNA repair protein Ra 96.9 0.0037 7.9E-08 76.0 10.8 96 958-1053 79-193 (446)
327 PRK08118 topology modulation p 96.9 0.0018 3.9E-08 68.4 7.1 33 960-992 2-34 (167)
328 PF13191 AAA_16: AAA ATPase do 96.9 0.002 4.2E-08 67.5 7.2 59 926-995 2-63 (185)
329 TIGR00763 lon ATP-dependent pr 96.9 0.02 4.3E-07 74.3 17.7 34 492-527 347-380 (775)
330 PRK04841 transcriptional regul 96.8 0.017 3.7E-07 75.6 16.5 153 960-1130 33-220 (903)
331 PRK07261 topology modulation p 96.8 0.0026 5.7E-08 67.3 7.4 33 961-993 2-34 (171)
332 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0047 1E-07 70.1 9.6 93 921-1028 57-159 (264)
333 PRK15455 PrkA family serine pr 96.8 0.0019 4E-08 79.4 6.5 63 922-992 74-137 (644)
334 PRK00131 aroK shikimate kinase 96.8 0.0014 3E-08 68.1 4.6 34 958-991 3-36 (175)
335 PF05673 DUF815: Protein of un 96.8 0.035 7.5E-07 62.2 15.6 56 450-520 23-78 (249)
336 PRK00080 ruvB Holliday junctio 96.7 0.0097 2.1E-07 69.3 11.8 60 452-525 23-82 (328)
337 PRK09361 radB DNA repair and r 96.7 0.0054 1.2E-07 67.2 9.2 36 958-993 22-60 (225)
338 PRK08533 flagellar accessory p 96.7 0.011 2.3E-07 65.8 11.3 74 958-1031 23-130 (230)
339 COG1373 Predicted ATPase (AAA+ 96.7 0.011 2.3E-07 71.0 11.6 121 961-1101 39-161 (398)
340 TIGR02012 tigrfam_recA protein 96.7 0.009 2E-07 69.5 10.5 76 958-1033 54-148 (321)
341 cd01131 PilT Pilus retraction 96.6 0.0039 8.5E-08 67.5 6.9 67 961-1027 3-83 (198)
342 PRK00149 dnaA chromosomal repl 96.6 0.0057 1.2E-07 74.3 9.0 57 449-519 117-173 (450)
343 PRK04296 thymidine kinase; Pro 96.6 0.014 3.1E-07 62.8 11.1 69 961-1030 4-90 (190)
344 COG5271 MDN1 AAA ATPase contai 96.5 0.0073 1.6E-07 79.4 9.3 141 960-1107 889-1047(4600)
345 PRK13695 putative NTPase; Prov 96.5 0.011 2.4E-07 62.3 9.4 23 961-983 2-24 (174)
346 TIGR00635 ruvB Holliday juncti 96.5 0.014 3.1E-07 66.8 10.9 61 452-526 2-62 (305)
347 PRK09376 rho transcription ter 96.5 0.0061 1.3E-07 72.3 7.8 72 960-1031 170-269 (416)
348 cd00983 recA RecA is a bacter 96.5 0.011 2.3E-07 69.0 9.6 74 960-1033 56-148 (325)
349 PF13671 AAA_33: AAA domain; P 96.4 0.0053 1.1E-07 61.8 6.2 31 962-994 2-32 (143)
350 PRK14974 cell division protein 96.4 0.023 4.9E-07 66.7 12.1 35 959-993 140-177 (336)
351 PF13604 AAA_30: AAA domain; P 96.4 0.0076 1.6E-07 65.3 7.5 34 960-993 19-55 (196)
352 PHA02774 E1; Provisional 96.4 0.023 4.9E-07 70.3 12.2 33 960-992 435-468 (613)
353 KOG2383 Predicted ATPase [Gene 96.4 0.012 2.6E-07 69.1 9.2 155 956-1140 111-296 (467)
354 PRK13947 shikimate kinase; Pro 96.4 0.0031 6.7E-08 65.9 4.2 31 961-991 3-33 (171)
355 PRK03839 putative kinase; Prov 96.4 0.0029 6.3E-08 67.0 4.0 31 961-991 2-32 (180)
356 cd01394 radB RadB. The archaea 96.4 0.021 4.7E-07 62.2 10.7 35 959-993 19-56 (218)
357 TIGR02688 conserved hypothetic 96.3 0.0062 1.3E-07 72.7 6.8 59 960-1030 210-272 (449)
358 COG2804 PulE Type II secretory 96.3 0.009 1.9E-07 72.3 8.2 94 919-1028 233-337 (500)
359 COG1485 Predicted ATPase [Gene 96.3 0.034 7.4E-07 64.8 12.5 100 956-1074 62-171 (367)
360 TIGR02928 orc1/cdc6 family rep 96.3 0.086 1.9E-06 61.9 16.3 51 454-519 15-65 (365)
361 PRK14722 flhF flagellar biosyn 96.3 0.011 2.4E-07 70.2 8.6 24 960-983 138-161 (374)
362 PF00437 T2SE: Type II/IV secr 96.3 0.006 1.3E-07 68.8 6.2 96 921-1028 101-207 (270)
363 PRK05800 cobU adenosylcobinami 96.3 0.024 5.1E-07 60.3 10.1 68 961-1032 3-90 (170)
364 COG1219 ClpX ATP-dependent pro 96.3 0.003 6.5E-08 72.0 3.5 84 443-530 49-133 (408)
365 cd00464 SK Shikimate kinase (S 96.3 0.004 8.6E-08 63.6 4.1 31 961-991 1-31 (154)
366 PRK13948 shikimate kinase; Pro 96.3 0.0045 9.9E-08 66.4 4.7 36 956-991 7-42 (182)
367 COG3854 SpoIIIAA ncharacterize 96.2 0.023 4.9E-07 62.7 9.8 71 960-1030 138-230 (308)
368 cd00544 CobU Adenosylcobinamid 96.2 0.02 4.2E-07 60.9 9.3 71 962-1034 2-89 (169)
369 PRK00625 shikimate kinase; Pro 96.2 0.0041 8.9E-08 66.2 4.2 31 961-991 2-32 (173)
370 KOG3347 Predicted nucleotide k 96.2 0.0034 7.4E-08 64.8 3.4 32 960-991 8-39 (176)
371 PF06309 Torsin: Torsin; Inte 96.2 0.022 4.7E-07 57.7 9.0 52 925-983 26-77 (127)
372 cd01128 rho_factor Transcripti 96.2 0.037 7.9E-07 62.4 11.7 26 960-985 17-42 (249)
373 TIGR00362 DnaA chromosomal rep 96.2 0.016 3.5E-07 69.4 9.4 25 492-518 136-160 (405)
374 PRK10536 hypothetical protein; 96.2 0.042 9.1E-07 62.1 11.9 22 961-982 76-97 (262)
375 cd03283 ABC_MutS-like MutS-lik 96.2 0.027 5.7E-07 61.3 10.1 69 960-1028 26-115 (199)
376 PRK10867 signal recognition pa 96.2 0.15 3.1E-06 62.0 17.2 73 958-1030 99-195 (433)
377 TIGR00416 sms DNA repair prote 96.2 0.023 5E-07 69.3 10.6 75 958-1032 93-184 (454)
378 PF06745 KaiC: KaiC; InterPro 96.1 0.037 8.1E-07 60.7 11.2 77 953-1030 14-127 (226)
379 TIGR02525 plasmid_TraJ plasmid 96.1 0.016 3.5E-07 68.8 8.9 68 961-1028 151-235 (372)
380 PRK14532 adenylate kinase; Pro 96.1 0.0048 1E-07 65.7 4.1 30 961-990 2-31 (188)
381 PRK06067 flagellar accessory p 96.1 0.045 9.7E-07 60.6 11.9 74 958-1031 24-133 (234)
382 COG5245 DYN1 Dynein, heavy cha 96.1 0.03 6.6E-07 73.6 11.5 138 959-1109 1494-1660(3164)
383 TIGR00390 hslU ATP-dependent p 96.1 0.0055 1.2E-07 73.2 4.8 79 449-531 6-84 (441)
384 TIGR02533 type_II_gspE general 96.1 0.021 4.5E-07 70.2 9.9 94 920-1028 218-321 (486)
385 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.0048 1E-07 65.1 3.9 33 962-996 2-34 (183)
386 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.045 9.8E-07 60.9 11.8 39 953-992 16-57 (237)
387 PRK13949 shikimate kinase; Pro 96.1 0.0049 1.1E-07 65.2 3.9 32 960-991 2-33 (169)
388 TIGR02858 spore_III_AA stage I 96.1 0.012 2.7E-07 67.0 7.3 69 960-1028 112-204 (270)
389 PF07693 KAP_NTPase: KAP famil 96.1 0.4 8.6E-06 55.3 19.8 29 957-985 18-46 (325)
390 cd00984 DnaB_C DnaB helicase C 96.1 0.04 8.6E-07 60.9 11.2 36 958-993 12-51 (242)
391 PRK05973 replicative DNA helic 96.1 0.043 9.4E-07 61.4 11.4 37 957-993 62-101 (237)
392 PRK12723 flagellar biosynthesi 96.1 0.056 1.2E-06 64.7 12.9 129 959-1101 174-329 (388)
393 PRK06217 hypothetical protein; 96.1 0.0057 1.2E-07 65.2 4.3 32 960-991 2-33 (183)
394 PRK13764 ATPase; Provisional 96.0 0.018 3.9E-07 72.1 9.0 68 960-1028 258-334 (602)
395 PRK00411 cdc6 cell division co 96.0 0.073 1.6E-06 63.2 13.8 54 664-720 125-181 (394)
396 TIGR01420 pilT_fam pilus retra 96.0 0.012 2.7E-07 69.1 7.2 69 960-1028 123-205 (343)
397 TIGR02782 TrbB_P P-type conjug 96.0 0.02 4.3E-07 66.2 8.7 69 960-1028 133-214 (299)
398 PRK08233 hypothetical protein; 96.0 0.034 7.3E-07 58.4 9.7 32 960-991 4-36 (182)
399 PRK10436 hypothetical protein; 96.0 0.025 5.5E-07 69.0 9.6 94 920-1028 194-297 (462)
400 PRK06762 hypothetical protein; 96.0 0.016 3.5E-07 60.3 7.0 36 960-995 3-38 (166)
401 PRK13407 bchI magnesium chelat 96.0 0.11 2.4E-06 61.0 14.6 87 770-857 187-289 (334)
402 PRK14086 dnaA chromosomal repl 95.9 0.035 7.6E-07 69.5 10.9 75 680-796 378-457 (617)
403 KOG2543 Origin recognition com 95.9 0.064 1.4E-06 63.0 12.2 59 925-994 7-65 (438)
404 PRK14531 adenylate kinase; Pro 95.9 0.0074 1.6E-07 64.4 4.4 31 960-990 3-33 (183)
405 PRK06581 DNA polymerase III su 95.9 0.22 4.8E-06 55.8 15.7 133 959-1110 15-164 (263)
406 cd01428 ADK Adenylate kinase ( 95.9 0.0066 1.4E-07 64.5 3.9 29 962-990 2-30 (194)
407 PRK09354 recA recombinase A; P 95.9 0.04 8.7E-07 64.8 10.6 73 960-1032 61-152 (349)
408 PF10236 DAP3: Mitochondrial r 95.9 0.32 6.9E-06 56.6 17.8 127 1007-1134 142-307 (309)
409 cd02020 CMPK Cytidine monophos 95.9 0.0073 1.6E-07 60.9 3.9 30 962-991 2-31 (147)
410 cd00046 DEXDc DEAD-like helica 95.9 0.015 3.2E-07 56.5 5.8 23 961-983 2-24 (144)
411 cd02021 GntK Gluconate kinase 95.8 0.0076 1.7E-07 61.6 3.9 28 962-989 2-29 (150)
412 PF05272 VirE: Virulence-assoc 95.8 0.016 3.4E-07 63.1 6.4 111 960-1092 53-168 (198)
413 PRK14962 DNA polymerase III su 95.8 0.14 3E-06 63.0 15.1 51 452-520 12-62 (472)
414 cd01122 GP4d_helicase GP4d_hel 95.8 0.072 1.6E-06 60.0 11.9 35 958-992 29-67 (271)
415 PRK14530 adenylate kinase; Pro 95.8 0.0086 1.9E-07 65.5 4.3 30 961-990 5-34 (215)
416 cd03281 ABC_MSH5_euk MutS5 hom 95.8 0.063 1.4E-06 59.0 11.1 22 960-981 30-51 (213)
417 PF00448 SRP54: SRP54-type pro 95.8 0.051 1.1E-06 59.1 10.2 108 959-1078 1-131 (196)
418 PF04665 Pox_A32: Poxvirus A32 95.8 0.1 2.2E-06 58.5 12.8 132 958-1106 12-169 (241)
419 cd01393 recA_like RecA is a b 95.8 0.042 9E-07 60.1 9.6 37 958-994 18-63 (226)
420 PRK13900 type IV secretion sys 95.8 0.027 5.8E-07 66.1 8.4 69 960-1028 161-245 (332)
421 COG0703 AroK Shikimate kinase 95.8 0.0077 1.7E-07 64.0 3.5 32 960-991 3-34 (172)
422 TIGR02538 type_IV_pilB type IV 95.7 0.031 6.8E-07 70.0 9.4 94 920-1028 292-395 (564)
423 PRK06645 DNA polymerase III su 95.7 0.12 2.7E-06 63.8 14.0 53 452-522 19-71 (507)
424 PTZ00088 adenylate kinase 1; P 95.7 0.01 2.2E-07 66.0 4.2 32 960-991 7-38 (229)
425 TIGR01313 therm_gnt_kin carboh 95.7 0.0085 1.9E-07 62.2 3.4 28 962-989 1-28 (163)
426 PRK05342 clpX ATP-dependent pr 95.6 0.015 3.3E-07 70.0 5.9 86 443-531 59-145 (412)
427 TIGR03878 thermo_KaiC_2 KaiC d 95.6 0.082 1.8E-06 59.8 11.4 35 958-992 35-72 (259)
428 COG0563 Adk Adenylate kinase a 95.6 0.011 2.4E-07 63.3 4.2 28 961-988 2-29 (178)
429 cd01123 Rad51_DMC1_radA Rad51_ 95.6 0.045 9.7E-07 60.2 9.1 37 958-994 18-63 (235)
430 smart00487 DEXDc DEAD-like hel 95.6 0.055 1.2E-06 55.9 9.3 24 960-983 25-49 (201)
431 PRK13342 recombination factor 95.6 0.18 3.9E-06 60.8 14.9 33 493-527 37-69 (413)
432 PRK04195 replication factor C 95.6 0.21 4.5E-06 61.6 15.6 63 452-529 12-74 (482)
433 cd03243 ABC_MutS_homologs The 95.6 0.079 1.7E-06 57.4 10.7 21 960-980 30-50 (202)
434 cd00227 CPT Chloramphenicol (C 95.6 0.01 2.2E-07 62.7 3.7 34 960-993 3-36 (175)
435 cd01130 VirB11-like_ATPase Typ 95.6 0.051 1.1E-06 58.2 9.1 69 960-1028 26-110 (186)
436 PRK03731 aroL shikimate kinase 95.6 0.013 2.8E-07 61.4 4.4 32 960-991 3-34 (171)
437 PRK14088 dnaA chromosomal repl 95.5 0.055 1.2E-06 65.8 10.3 67 446-527 97-168 (440)
438 cd02027 APSK Adenosine 5'-phos 95.5 0.033 7.1E-07 57.7 7.1 33 962-994 2-37 (149)
439 PF13479 AAA_24: AAA domain 95.5 0.048 1E-06 59.8 8.7 20 960-979 4-23 (213)
440 COG4619 ABC-type uncharacteriz 95.5 0.04 8.6E-07 58.3 7.5 27 957-983 27-53 (223)
441 PRK06547 hypothetical protein; 95.5 0.014 3.1E-07 62.1 4.4 34 958-991 14-47 (172)
442 TIGR01360 aden_kin_iso1 adenyl 95.5 0.014 2.9E-07 61.7 4.2 31 960-990 4-34 (188)
443 PRK13946 shikimate kinase; Pro 95.5 0.012 2.7E-07 62.8 3.8 32 960-991 11-42 (184)
444 COG0541 Ffh Signal recognition 95.5 2.3 4.9E-05 51.4 22.6 205 956-1191 97-340 (451)
445 KOG3928 Mitochondrial ribosome 95.5 0.35 7.5E-06 57.5 15.7 50 1088-1138 405-458 (461)
446 PRK14528 adenylate kinase; Pro 95.5 0.014 2.9E-07 62.7 4.2 31 960-990 2-32 (186)
447 cd03280 ABC_MutS2 MutS2 homolo 95.4 0.091 2E-06 56.9 10.5 21 960-980 29-49 (200)
448 COG2909 MalT ATP-dependent tra 95.4 0.13 2.9E-06 65.5 13.2 158 960-1136 38-235 (894)
449 PRK05057 aroK shikimate kinase 95.4 0.015 3.2E-07 61.7 4.3 33 960-992 5-37 (172)
450 COG4088 Predicted nucleotide k 95.4 0.067 1.5E-06 58.3 9.1 24 961-984 3-26 (261)
451 PRK08154 anaerobic benzoate ca 95.4 0.024 5.3E-07 65.7 6.3 36 956-991 130-165 (309)
452 PRK13894 conjugal transfer ATP 95.4 0.052 1.1E-06 63.4 9.0 69 960-1028 149-229 (319)
453 PRK02496 adk adenylate kinase; 95.4 0.015 3.2E-07 61.8 4.1 30 961-990 3-32 (184)
454 PRK13833 conjugal transfer pro 95.4 0.053 1.2E-06 63.3 8.9 69 960-1028 145-225 (323)
455 PRK10416 signal recognition pa 95.3 0.26 5.6E-06 57.6 14.5 35 958-992 113-150 (318)
456 PLN02200 adenylate kinase fami 95.3 0.017 3.7E-07 64.4 4.6 37 958-996 42-78 (234)
457 PF09848 DUF2075: Uncharacteri 95.3 0.037 8.1E-07 65.2 7.6 23 961-983 3-25 (352)
458 TIGR01351 adk adenylate kinase 95.3 0.016 3.4E-07 63.2 3.9 29 962-990 2-30 (210)
459 cd03216 ABC_Carb_Monos_I This 95.3 0.069 1.5E-06 56.0 8.6 73 957-1029 24-111 (163)
460 PF13238 AAA_18: AAA domain; P 95.2 0.014 3.1E-07 57.1 3.3 22 962-983 1-22 (129)
461 smart00534 MUTSac ATPase domai 95.2 0.14 3E-06 54.9 11.0 19 962-980 2-20 (185)
462 PRK04328 hypothetical protein; 95.2 0.14 3.1E-06 57.5 11.6 39 953-992 18-59 (249)
463 PRK11889 flhF flagellar biosyn 95.2 0.15 3.3E-06 60.9 12.1 72 959-1030 241-332 (436)
464 TIGR03574 selen_PSTK L-seryl-t 95.2 0.037 7.9E-07 61.9 6.8 34 962-995 2-38 (249)
465 PRK00279 adk adenylate kinase; 95.2 0.018 3.8E-07 63.0 4.2 30 961-990 2-31 (215)
466 PTZ00202 tuzin; Provisional 95.2 0.47 1E-05 57.4 16.1 60 923-993 261-320 (550)
467 COG1066 Sms Predicted ATP-depe 95.2 0.13 2.7E-06 61.2 11.0 95 958-1052 92-204 (456)
468 COG1102 Cmk Cytidylate kinase 95.1 0.018 3.8E-07 60.5 3.6 29 961-989 2-30 (179)
469 KOG0245 Kinesin-like protein [ 95.1 0.047 1E-06 69.9 7.9 95 136-237 456-558 (1221)
470 TIGR00064 ftsY signal recognit 95.1 0.47 1E-05 54.3 15.5 36 958-993 71-109 (272)
471 COG2805 PilT Tfp pilus assembl 95.1 0.049 1.1E-06 62.2 7.3 70 960-1029 125-209 (353)
472 PHA02544 44 clamp loader, smal 95.1 0.42 9E-06 55.1 15.3 60 452-529 19-78 (316)
473 TIGR00767 rho transcription te 95.1 0.059 1.3E-06 64.4 8.3 26 959-984 168-193 (415)
474 PF13481 AAA_25: AAA domain; P 95.1 0.072 1.6E-06 56.6 8.3 74 960-1033 33-156 (193)
475 TIGR02788 VirB11 P-type DNA tr 95.1 0.032 7E-07 64.6 6.1 70 959-1028 144-228 (308)
476 TIGR03880 KaiC_arch_3 KaiC dom 95.1 0.18 3.9E-06 55.3 11.5 37 958-994 15-54 (224)
477 PRK13851 type IV secretion sys 95.1 0.03 6.4E-07 66.0 5.6 70 959-1028 162-246 (344)
478 TIGR00382 clpX endopeptidase C 95.0 0.029 6.4E-07 67.4 5.5 85 443-530 65-152 (413)
479 cd03115 SRP The signal recogni 95.0 0.092 2E-06 55.2 8.6 33 962-994 3-38 (173)
480 COG1855 ATPase (PilT family) [ 95.0 0.025 5.3E-07 67.3 4.5 45 920-983 243-287 (604)
481 PRK04040 adenylate kinase; Pro 95.0 0.025 5.5E-07 61.0 4.4 30 959-988 2-33 (188)
482 PRK05201 hslU ATP-dependent pr 94.9 0.029 6.2E-07 67.3 5.0 72 461-535 20-92 (443)
483 PRK14527 adenylate kinase; Pro 94.9 0.022 4.9E-07 61.0 3.8 32 959-990 6-37 (191)
484 PRK06696 uridine kinase; Valid 94.9 0.06 1.3E-06 59.3 7.2 38 959-996 22-62 (223)
485 PF06414 Zeta_toxin: Zeta toxi 94.8 0.078 1.7E-06 57.4 7.8 41 958-998 14-55 (199)
486 PRK12724 flagellar biosynthesi 94.8 0.3 6.5E-06 58.9 13.1 33 960-992 224-260 (432)
487 COG1936 Predicted nucleotide k 94.8 0.02 4.4E-07 60.7 3.0 30 961-991 2-31 (180)
488 TIGR01448 recD_rel helicase, p 94.8 0.11 2.3E-06 67.1 10.1 100 961-1077 340-458 (720)
489 cd00267 ABC_ATPase ABC (ATP-bi 94.8 0.12 2.5E-06 53.6 8.6 71 958-1029 24-109 (157)
490 PLN02674 adenylate kinase 94.8 0.029 6.3E-07 63.0 4.4 33 958-990 30-62 (244)
491 PRK07952 DNA replication prote 94.8 0.047 1E-06 61.4 6.0 88 430-530 48-138 (244)
492 PRK04182 cytidylate kinase; Pr 94.8 0.028 6.1E-07 58.8 4.0 29 961-989 2-30 (180)
493 PF00406 ADK: Adenylate kinase 94.7 0.027 5.8E-07 58.0 3.7 31 964-996 1-31 (151)
494 PF13521 AAA_28: AAA domain; P 94.7 0.029 6.2E-07 58.4 3.9 26 962-988 2-27 (163)
495 TIGR02655 circ_KaiC circadian 94.7 0.16 3.4E-06 62.6 10.8 74 958-1031 262-366 (484)
496 PRK01184 hypothetical protein; 94.7 0.029 6.2E-07 59.5 3.8 29 961-990 3-31 (184)
497 TIGR01613 primase_Cterm phage/ 94.6 0.12 2.7E-06 59.6 9.3 143 929-1092 54-202 (304)
498 TIGR02524 dot_icm_DotB Dot/Icm 94.6 0.095 2.1E-06 62.1 8.4 69 960-1028 135-222 (358)
499 PF09336 Vps4_C: Vps4 C termin 94.6 0.024 5.2E-07 50.6 2.6 35 1176-1212 28-62 (62)
500 TIGR03499 FlhF flagellar biosy 94.6 0.17 3.6E-06 58.1 10.1 36 959-994 194-234 (282)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-65 Score=587.93 Aligned_cols=544 Identities=31% Similarity=0.453 Sum_probs=430.2
Q ss_pred CCcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEE
Q 000914 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1226)
Q Consensus 446 ~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~ 525 (1226)
....+|+|.+|... +.|-.-|..-+. |++||++..|+--. ..+++||.|||| ++++|||.|+|.++|++||-+
T Consensus 182 ~~~snv~f~diGG~--d~~~~el~~li~-~i~~Pe~~~~lGv~--PprGvLlHGPPG--CGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL--DKTLAELCELII-HIKHPEVFSSLGVR--PPRGVLLHGPPG--CGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh--HHHHHHHHHHHH-HhcCchhHhhcCCC--CCCceeeeCCCC--ccHHHHHHHHhhhcCCceEee
Confidence 45668999999999 888887777665 79999997765333 358899999999 999999999999999999999
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCee
Q 000914 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1226)
Q Consensus 526 D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 605 (1226)
-...+-++.+.|+|.
T Consensus 255 sApeivSGvSGESEk----------------------------------------------------------------- 269 (802)
T KOG0733|consen 255 SAPEIVSGVSGESEK----------------------------------------------------------------- 269 (802)
T ss_pred cchhhhcccCcccHH-----------------------------------------------------------------
Confidence 887777776654421
Q ss_pred eEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEE
Q 000914 606 KFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFV 685 (1226)
Q Consensus 606 k~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi 685 (1226)
.|++||+-+.+ ..|+||||
T Consensus 270 ----------------------------------------------------------kiRelF~~A~~---~aPcivFi 288 (802)
T KOG0733|consen 270 ----------------------------------------------------------KIRELFDQAKS---NAPCIVFI 288 (802)
T ss_pred ----------------------------------------------------------HHHHHHHHHhc---cCCeEEEe
Confidence 35667777776 89999999
Q ss_pred cChhhhhc-----cC----hhhHHHHHHHHhcCC------CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhccc
Q 000914 686 KDIEKSLT-----GN----NDAYGALKSKLENLP------SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLA 750 (1226)
Q Consensus 686 ~die~~l~-----~~----~~~~~~l~~~L~~l~------g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~ 750 (1226)
||||. +. .+ +++...|-.-|+.|. .+|||||++|
T Consensus 289 DeIDA-I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn------------------------------ 337 (802)
T KOG0733|consen 289 DEIDA-ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN------------------------------ 337 (802)
T ss_pred ecccc-cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC------------------------------
Confidence 99999 55 12 344555555555552 3899999999
Q ss_pred CCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHH-hhhCCCCccc
Q 000914 751 FPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVD 827 (1226)
Q Consensus 751 ~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~-L~~n~l~~~d 827 (1226)
+||.+|. ||+| ||++++....|+..+|..|+++.-. |+-.+ +.+
T Consensus 338 RPDslDp-------------------------------aLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g--~~d 384 (802)
T KOG0733|consen 338 RPDSLDP-------------------------------ALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG--DFD 384 (802)
T ss_pred CCcccCH-------------------------------HHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC--CcC
Confidence 7777775 8888 9999999999999999999999755 54444 788
Q ss_pred chhhhcccCCCCHHHHHHHHhhhhhcccccccCCCCC-CCcccc-----------cccchHhhHH-----HHH-----hh
Q 000914 828 LESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKI-----------STESIMYGLN-----ILQ-----GI 885 (1226)
Q Consensus 828 L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~i-----------d~~si~~~~~-----df~-----~a 885 (1226)
+..||.+|.||-|||+.+||.+|+..|+.|..++... ..+..+ +..+|+.... ++. ..
T Consensus 385 ~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i 464 (802)
T KOG0733|consen 385 FKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAI 464 (802)
T ss_pred HHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHH
Confidence 9999999999999999999999999999997664321 011111 1111220000 000 01
Q ss_pred hhhhhhhhhhhc--cccChhHHHHHhhcCCCCC-------CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCC
Q 000914 886 QSESKSLKKSLK--DVVTENEFEKKLLADVIPP-------SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLT 956 (1226)
Q Consensus 886 ~~eik~~~~slk--~lv~~~e~~~~ll~~vIp~-------~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~ 956 (1226)
++...++..... -.+..++|+..+. .+-|. .-++++|+|||++++++.+|..++.+|+++|++|...|+.
T Consensus 465 ~~~~d~~S~E~~~~L~i~~eDF~~Al~-~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~ 543 (802)
T KOG0733|consen 465 LNNPDPLSKELLEGLSIKFEDFEEALS-KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID 543 (802)
T ss_pred HhCCCCcChHHhccceecHHHHHHHHH-hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC
Confidence 111111111111 1133456665542 11111 1247899999999999999999999999999999999976
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 000914 957 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1036 (1226)
Q Consensus 957 kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1036 (1226)
. |.|||||||||||||.||+|+|++.+++|+.|.+++|+++|+|++|..++.+|..|+..+|||||+||||.|.++|..
T Consensus 544 ~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~ 622 (802)
T KOG0733|consen 544 A-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSD 622 (802)
T ss_pred C-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCC
Confidence 5 689999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHh--hccc
Q 000914 1037 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILA--KEEL 1112 (1226)
Q Consensus 1037 ~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~--k~~l 1112 (1226)
.+ .....+++++|+..|||+.. +..|.|||+||+|+.+|++++| ||++.+++++|+.++|..||+.+.+ +..+
T Consensus 623 ~~-s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl 699 (802)
T KOG0733|consen 623 EG-SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPL 699 (802)
T ss_pred CC-chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCC
Confidence 44 66778999999999999964 4789999999999999999999 9999999999999999999999999 6778
Q ss_pred CChhcHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 000914 1113 ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1190 (1226)
Q Consensus 1113 ~~dvdl~~LA~~Te--GySgsDL~~L~~~Aa~~aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v 1190 (1226)
.+++|++.||..+. ||+|+||..||++|...|+++.+...... . ...........+++.||+.|++++
T Consensus 700 ~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~--------~--~~~~~~~~~~~~t~~hF~eA~~~i 769 (802)
T KOG0733|consen 700 SSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSS--------E--DDVTVRSSTIIVTYKHFEEAFQRI 769 (802)
T ss_pred CcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcccc--------C--cccceeeeeeeecHHHHHHHHHhc
Confidence 89999999999887 99999999999999999999876532210 0 000000002358999999999999
Q ss_pred cccccccccch
Q 000914 1191 CASVSSESTNM 1201 (1226)
Q Consensus 1191 ~pS~s~e~~~~ 1201 (1226)
+||++.....+
T Consensus 770 ~pSv~~~dr~~ 780 (802)
T KOG0733|consen 770 RPSVSERDRKK 780 (802)
T ss_pred CCCccHHHHHH
Confidence 99998764433
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-60 Score=559.63 Aligned_cols=478 Identities=30% Similarity=0.477 Sum_probs=403.1
Q ss_pred hHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEeccCCCCCCCcccccc
Q 000914 462 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPGGSSKEADSV 541 (1226)
Q Consensus 462 e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~~~~g~~~~e~~~~ 541 (1226)
..--.++.+.+...|.++...+.. =....+++||+|||| +++++|++|.|++.+|.|+.+....+......|+|++
T Consensus 190 ~~~~~~i~e~v~~pl~~~~~~~s~--g~~~prg~Ll~gppg--~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~ 265 (693)
T KOG0730|consen 190 KRQLSVIRELVELPLRHPALFKSI--GIKPPRGLLLYGPPG--TGKTFLVRAVANEYGAFLFLINGPELISKFPGETESN 265 (693)
T ss_pred HHHHHHHHHHHHhhhcchhhhhhc--CCCCCCCccccCCCC--CChHHHHHHHHHHhCceeEecccHHHHHhcccchHHH
Confidence 444567788888899998875422 245678999999999 9999999999999999999999876654433333221
Q ss_pred ccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeeeEecccCCCCCCCcee
Q 000914 542 KESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTL 621 (1226)
Q Consensus 542 ~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~g~~~~~~~~~~~v 621 (1226)
T Consensus 266 -------------------------------------------------------------------------------- 265 (693)
T KOG0730|consen 266 -------------------------------------------------------------------------------- 265 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCC-CeEEEEcChhhhhcc------
Q 000914 622 RFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSS-PLIVFVKDIEKSLTG------ 694 (1226)
Q Consensus 622 ~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~-P~Ilfi~die~~l~~------ 694 (1226)
+...|+...+ .+ |+||||+|+|. ++.
T Consensus 266 -------------------------------------------LR~~f~~a~k---~~~psii~IdEld~-l~p~r~~~~ 298 (693)
T KOG0730|consen 266 -------------------------------------------LRKAFAEALK---FQVPSIIFIDELDA-LCPKREGAD 298 (693)
T ss_pred -------------------------------------------HHHHHHHHhc---cCCCeeEeHHhHhh-hCCcccccc
Confidence 1223333322 55 99999999999 553
Q ss_pred --ChhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHH
Q 000914 695 --NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALK 770 (1226)
Q Consensus 695 --~~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~ 770 (1226)
..+....+...++.+. +.||||++++ +|+.++.
T Consensus 299 ~~e~Rv~sqlltL~dg~~~~~~vivl~atn------------------------------rp~sld~------------- 335 (693)
T KOG0730|consen 299 DVESRVVSQLLTLLDGLKPDAKVIVLAATN------------------------------RPDSLDP------------- 335 (693)
T ss_pred hHHHHHHHHHHHHHhhCcCcCcEEEEEecC------------------------------CccccCh-------------
Confidence 4566667777777777 7999999999 5566664
Q ss_pred HHhhhCCCeEEecCCchhHHHH-HHHHHHhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhh
Q 000914 771 QISRLFPNKVTIQLPQDEALLS-DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGW 849 (1226)
Q Consensus 771 ~l~~lf~~~i~i~~P~DeALLR-rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l~~~dL~~La~~tkg~sgadI~~Lv~~ 849 (1226)
++.| ||++.+++..|+..+|..|+++|+..-... ++++|..+|..|.||.|+|+..+|++
T Consensus 336 ------------------alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~e 396 (693)
T KOG0730|consen 336 ------------------ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCRE 396 (693)
T ss_pred ------------------hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHH
Confidence 6666 999999999999999999999998733222 78999999999999999999999999
Q ss_pred hhhcccccccCCCCCCCcccccccchHhhHHHHHhhhhhhhhhhhhhccccChhHHHHHhhcCCCCCCCCCCCcccccCc
Q 000914 850 ALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGAL 929 (1226)
Q Consensus 850 A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk~lv~~~e~~~~ll~~vIp~~e~~~tfddI~Gl 929 (1226)
|...++.+ ...+|+.+...+.+.- . ..++ .+-++++|+||||+
T Consensus 397 a~~~~~r~--------------------~~~~~~~A~~~i~psa----------~------Re~~-ve~p~v~W~dIGGl 439 (693)
T KOG0730|consen 397 ASLQATRR--------------------TLEIFQEALMGIRPSA----------L------REIL-VEMPNVSWDDIGGL 439 (693)
T ss_pred HHHHHhhh--------------------hHHHHHHHHhcCCchh----------h------hhee-ccCCCCChhhccCH
Confidence 99888775 3455655544443311 0 0011 22347899999999
Q ss_pred HHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHH
Q 000914 930 ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKA 1009 (1226)
Q Consensus 930 e~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~ 1009 (1226)
+++|.+|++.|.+|+.+|+.|.+.++ .||+|||||||||||||++|+|+|++.+++|+.+.+++|+++|+|++|+.++.
T Consensus 440 E~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~ 518 (693)
T KOG0730|consen 440 EELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIRE 518 (693)
T ss_pred HHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999985 56799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--hccc
Q 000914 1010 VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPR 1087 (1226)
Q Consensus 1010 lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~ 1087 (1226)
+|..|+..+|+|||+||||.+.+.|+.... .+..+++++|+.+|||+... .+|+|||+||+|+.||++++| ||++
T Consensus 519 iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~ 595 (693)
T KOG0730|consen 519 VFRKARQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDR 595 (693)
T ss_pred HHHHHhhcCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHHHHccccccc--CcEEEEeccCChhhcCHHHcCCcccce
Confidence 999999999999999999999998864333 78899999999999999765 679999999999999999999 9999
Q ss_pred cccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCC
Q 000914 1088 RLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASP 1167 (1226)
Q Consensus 1088 ~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ek~~~~~e~~~~~ 1167 (1226)
.|+|++||.+.|.+||+.+++++++.+++|+..||+.|+||||+||.++|++|+..++++.++
T Consensus 596 iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~----------------- 658 (693)
T KOG0730|consen 596 IIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE----------------- 658 (693)
T ss_pred eEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc-----------------
Confidence 999999999999999999999999999999999999999999999999999999999998543
Q ss_pred CCCCccccccccHHHHHHHHHHhccccccc
Q 000914 1168 PLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1197 (1226)
Q Consensus 1168 ~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e 1197 (1226)
...++.+||.+|++.++++.+..
T Consensus 659 -------a~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 659 -------ATEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred -------cccccHHHHHHHHHhhcccCCHH
Confidence 34689999999999999998765
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-55 Score=486.98 Aligned_cols=378 Identities=60% Similarity=0.932 Sum_probs=339.8
Q ss_pred cccCCCCHHHHHHHHhhhhhcccccccCCCCCCCcccccccchHhhHHHHHhhhhhhhhhhhhhc-cccChhHHHHHhhc
Q 000914 833 IKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLK-DVVTENEFEKKLLA 911 (1226)
Q Consensus 833 ~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk-~lv~~~e~~~~ll~ 911 (1226)
..+..+...-++.++.+|.+|++.++..+.... ..++..+++.++..+|+....+ .+++ .++..++++..+..
T Consensus 6 ~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~s 79 (386)
T KOG0737|consen 6 TKDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIAS 79 (386)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhhh
Confidence 334455667788999999999998765443333 5677788888887777665433 3444 37889999999999
Q ss_pred CCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 912 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 912 ~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
.+++|.++.++|+||+|++.++++|++.|.+|+++|++|+.+++.+|++|||||||||||||++|+|+|+++|++|+.|.
T Consensus 80 ~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 80 DVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred cccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEec
Q 000914 992 MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1071 (1226)
Q Consensus 992 ~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTT 1071 (1226)
++.++++|+|+.++.++.+|..|.+.+|+||||||+|.+++.| ...++++...+.++|+..|||+.++.+.+|+|+|||
T Consensus 160 ~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 160 VSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC
Confidence 9999999999999999999999999999999999999999999 678999999999999999999999988899999999
Q ss_pred CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHH
Q 000914 1072 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1151 (1226)
Q Consensus 1072 N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~ 1151 (1226)
|+|.+||++++||++++++|++|+..+|.+||+.+++.+++.+++|+..+|.+|+||||+||+++|..|++.++|+++..
T Consensus 239 NRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 239 NRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred CCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred H--HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCCcc
Q 000914 1152 E--KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSR 1217 (1226)
Q Consensus 1152 ~--~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~~R 1217 (1226)
+ ..+.....+.....+.....-..|+++++||..|+.+|.+++..+...|....+|++.||++++|
T Consensus 319 ~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 319 ETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred cccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 6 22333333444444444555668999999999999999999999999999999999999999986
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4e-51 Score=513.20 Aligned_cols=538 Identities=29% Similarity=0.452 Sum_probs=409.6
Q ss_pred ccccccccccccchHHHHHHHHhhhhhcccccccc-ccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEec
Q 000914 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAK-YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1226)
Q Consensus 449 i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~-~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~ 527 (1226)
-+++|+++..+ +..+..|.+.....|+|+++.+ ++ + ...+.|||+||+| .++++||||||++.+++++.++.
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i-~~~~giLL~GppG--tGKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--I-EPPKGVLLYGPPG--TGKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCceEEEECCCC--CChHHHHHHHHHHhCCeEEEEec
Confidence 46899999998 9999999999998999998764 32 2 3457899999999 89999999999999999988875
Q ss_pred cCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeeeE
Q 000914 528 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 607 (1226)
Q Consensus 528 ~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~ 607 (1226)
..+.+.+..+
T Consensus 246 ~~i~~~~~g~---------------------------------------------------------------------- 255 (733)
T TIGR01243 246 PEIMSKYYGE---------------------------------------------------------------------- 255 (733)
T ss_pred HHHhcccccH----------------------------------------------------------------------
Confidence 4443211100
Q ss_pred ecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcC
Q 000914 608 VGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKD 687 (1226)
Q Consensus 608 ~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi~d 687 (1226)
..-.+..+|+.+.. ..|.||||||
T Consensus 256 -----------------------------------------------------~~~~l~~lf~~a~~---~~p~il~iDE 279 (733)
T TIGR01243 256 -----------------------------------------------------SEERLREIFKEAEE---NAPSIIFIDE 279 (733)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHh---cCCcEEEeeh
Confidence 01134556666654 6899999999
Q ss_pred hhhhhccC--------hhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccc
Q 000914 688 IEKSLTGN--------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 757 (1226)
Q Consensus 688 ie~~l~~~--------~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~ 757 (1226)
+|.+...+ .++.+.|...|+.+. +.|+|||++++ |+.++.
T Consensus 280 id~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~------------------------------~~~ld~ 329 (733)
T TIGR01243 280 IDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNR------------------------------PDALDP 329 (733)
T ss_pred hhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCC------------------------------hhhcCH
Confidence 99965432 233445555666653 58999999983 333332
Q ss_pred cccccccchHHHHHHhh--hCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCC-Ccccchhhhcc
Q 000914 758 LHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIK 834 (1226)
Q Consensus 758 ~~~~~~~~~~~~~~l~~--lf~~~i~i~~P~DeALLRrw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l-~~~dL~~La~~ 834 (1226)
++.+ +|...|.+.+|+.+.+ ..|+++|+. ...+ ++.+++.++..
T Consensus 330 -------------al~r~gRfd~~i~i~~P~~~~R------------------~~Il~~~~~--~~~l~~d~~l~~la~~ 376 (733)
T TIGR01243 330 -------------ALRRPGRFDREIVIRVPDKRAR------------------KEILKVHTR--NMPLAEDVDLDKLAEV 376 (733)
T ss_pred -------------HHhCchhccEEEEeCCcCHHHH------------------HHHHHHHhc--CCCCccccCHHHHHHh
Confidence 1111 3444555555554444 444445432 1223 56788999999
Q ss_pred cCCCCHHHHHHHHhhhhhcccccccCCCCCC-Cccccc---ccchHhhHHHHHhhhhhhhhhhhhhccccChhHHHHHhh
Q 000914 835 DQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKLKIS---TESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLL 910 (1226)
Q Consensus 835 tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~-~kl~id---~~si~~~~~df~~a~~eik~~~~slk~lv~~~e~~~~ll 910 (1226)
+.||++++|..+|..|+..++.+..+....+ ....+. ...+.+...+|..+...+.+... .
T Consensus 377 t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~--~------------- 441 (733)
T TIGR01243 377 THGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAI--R------------- 441 (733)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcccccc--c-------------
Confidence 9999999999999999999888754311000 000011 12334556677666554443210 0
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 911 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 911 ~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
... ...+.++|++|+|++.+++.|.+.+.+|+.+++.|.+.++ ++++|+|||||||||||++|+++|++++++|+.+
T Consensus 442 -~~~-~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 442 -EVL-VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred -hhh-ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 000 0112578999999999999999999999999999998874 4668999999999999999999999999999999
Q ss_pred ecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEe
Q 000914 991 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1070 (1226)
Q Consensus 991 ~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaT 1070 (1226)
.++++.++|+|++++.++.+|..|+..+|+||||||||.|++.+..........+++++|+..++++... .+++||+|
T Consensus 519 ~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~--~~v~vI~a 596 (733)
T TIGR01243 519 RGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL--SNVVVIAA 596 (733)
T ss_pred ehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC--CCEEEEEe
Confidence 9999999999999999999999999999999999999999988765545556778999999999997643 67999999
Q ss_pred cCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHH
Q 000914 1071 TNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1148 (1226)
Q Consensus 1071 TN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~airel 1148 (1226)
||+++.||++++| ||++.+++++|+.++|.+||+.++.+..+..++++..||..|+||+|+||.++|++|++.++++.
T Consensus 597 Tn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~ 676 (733)
T TIGR01243 597 TNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRES 676 (733)
T ss_pred CCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 99999999999999999999999998888889999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhHHHHHHhc
Q 000914 1149 LEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1212 (1226)
Q Consensus 1149 i~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG 1212 (1226)
+.....+.... . .........++++||..|+++++||++.+ .+..+.+|...+|
T Consensus 677 ~~~~~~~~~~~---~-----~~~~~~~~~i~~~~f~~al~~~~ps~~~~--~~~~~~~~~~~~~ 730 (733)
T TIGR01243 677 IGSPAKEKLEV---G-----EEEFLKDLKVEMRHFLEALKKVKPSVSKE--DMLRYERLAKELK 730 (733)
T ss_pred hhhccchhhhc---c-----cccccccCcccHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhc
Confidence 54322111000 0 00011234799999999999999999876 4567889988775
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-50 Score=474.22 Aligned_cols=438 Identities=27% Similarity=0.463 Sum_probs=336.7
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc-----ChhhHHHHHHHHh----cCC-CCEEEEEeccCCCCccccCCCCCc
Q 000914 665 INELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLE----NLP-SNVVVIGSHTQLDSRKEKSHPGGL 734 (1226)
Q Consensus 665 ~~~l~evl~~es~~~P~Ilfi~die~~l~~-----~~~~~~~l~~~L~----~l~-g~vvvIgs~~~~d~~k~k~~~~~~ 734 (1226)
+++.|.-+.. .+|+||||++.|-+... .-+....++-.|. +.+ ++++|||+.+..++
T Consensus 479 l~~~f~~a~~---~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~---------- 545 (953)
T KOG0736|consen 479 LQAIFSRARR---CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED---------- 545 (953)
T ss_pred HHHHHHHHhh---cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc----------
Confidence 3344444443 68999999999885432 1233444444444 222 48999999986554
Q ss_pred eeeccCcchhhhhcccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchh
Q 000914 735 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 812 (1226)
Q Consensus 735 ~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl 812 (1226)
.|- .+-.+|...|+++.|+++.+++ +|.-
T Consensus 546 ----------------lp~-----------------~i~~~f~~ei~~~~lse~qRl~iLq~y~---------------- 576 (953)
T KOG0736|consen 546 ----------------LPA-----------------DIQSLFLHEIEVPALSEEQRLEILQWYL---------------- 576 (953)
T ss_pred ----------------CCH-----------------HHHHhhhhhccCCCCCHHHHHHHHHHHH----------------
Confidence 332 3456788889999999988876 5542
Q ss_pred HHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhcccccccCCCCCC-----CcccccccchHhhHHHHHhhh
Q 000914 813 SIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-----AKLKISTESIMYGLNILQGIQ 886 (1226)
Q Consensus 813 ~IhT~L~~n~l-~~~dL~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~-----~kl~id~~si~~~~~df~~a~ 886 (1226)
....+ .++.+..++.+|.||+-.+++.++..+...+..+-....+.+ ..-.+-+....+...||..+.
T Consensus 577 ------~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kal 650 (953)
T KOG0736|consen 577 ------NHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKAL 650 (953)
T ss_pred ------hccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHH
Confidence 11223 346778899999999999999998877444433321111100 011122233344455554443
Q ss_pred hhhhhhhhhhccccChhHHHHHhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEc
Q 000914 887 SESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFG 966 (1226)
Q Consensus 887 ~eik~~~~slk~lv~~~e~~~~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~G 966 (1226)
...+ +++...+.+..| ++++|+||||++++|.++.+.+.+||.+|++|..+ .++..||||||
T Consensus 651 s~~~------------~~fs~aiGAPKI----PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYG 712 (953)
T KOG0736|consen 651 SRLQ------------KEFSDAIGAPKI----PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYG 712 (953)
T ss_pred HHHH------------HhhhhhcCCCCC----CccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEEC
Confidence 3222 223333333334 47999999999999999999999999999999876 45557999999
Q ss_pred CCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchH-HHHHH
Q 000914 967 PPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRK 1045 (1226)
Q Consensus 967 PPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~-e~l~~ 1045 (1226)
|||||||.+|+|+|.++..+|+.|.+++|.++|+|++|+++|.+|+.|+..+|||||+||+|+|.++|+..++. ..+.+
T Consensus 713 PPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDR 792 (953)
T KOG0736|consen 713 PPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDR 792 (953)
T ss_pred CCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876543 48899
Q ss_pred HHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--hccccccCCCCC-HHHHHHHHHHHHhhcccCChhcHHHHH
Q 000914 1046 MKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD-APNREKIIRVILAKEELASDVDLEGIA 1122 (1226)
Q Consensus 1046 vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd-~eeR~eILk~lL~k~~l~~dvdl~~LA 1122 (1226)
++.+|+.++||+.......|.||||||+|+.||++++| |||+.+++.+++ .+.+..+|+.+.++..+.+++|+.+||
T Consensus 793 VVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiA 872 (953)
T KOG0736|consen 793 VVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIA 872 (953)
T ss_pred HHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHH
Confidence 99999999999997667899999999999999999999 999999999875 566889999999999999999999999
Q ss_pred HHcC-CCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 000914 1123 NMAD-GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1197 (1226)
Q Consensus 1123 ~~Te-GySgsDL~~L~~~Aa~~aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e 1197 (1226)
+.++ .|+|+|++.||..|++.|++|.++..+.-. .+......+...|+|+||.+|+++++||++..
T Consensus 873 k~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~---------~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~ 939 (953)
T KOG0736|consen 873 KKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGT---------ISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQ 939 (953)
T ss_pred hhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhcc---------ccccccCCceEEEEHHHHHHHHHhcCCcccHH
Confidence 9997 799999999999999999999776543211 01111223446799999999999999999875
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-46 Score=412.73 Aligned_cols=284 Identities=42% Similarity=0.717 Sum_probs=257.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 000914 917 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 917 ~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~ 996 (1226)
..+.+.|+||.|+.++|+-|+++|.+|+..|+.|. ++.+|.+|||++||||||||+||+|+|.+++..|++|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 34578999999999999999999999999999997 5689999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccC--CCcEEEEEecCCC
Q 000914 997 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRP 1074 (1226)
Q Consensus 997 s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~--~~~VlVIaTTN~p 1074 (1226)
++|-|++|+.++-+|++|+.++|++|||||||.|+.+|++..++++.+++..+|+.+|||+.... ...|+|+|+||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987643 2349999999999
Q ss_pred CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000914 1075 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1154 (1226)
Q Consensus 1075 ~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ 1154 (1226)
|+||++|+|||.++|+|++|+.+.|..+|+..+....+.++++++.||..++||+|+||.++|++|.+.++|+.+.....
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654322
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcC
Q 000914 1155 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1213 (1226)
Q Consensus 1155 ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~ 1213 (1226)
+.....+. .+-..|++++||+.|+.+++||++.. .+..+.+|.+-||.
T Consensus 443 ~ei~~lak---------E~~~~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQLAK---------EEPKMPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhhhh---------hccccccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 22111111 11125899999999999999999855 57788999999996
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-44 Score=403.06 Aligned_cols=247 Identities=41% Similarity=0.697 Sum_probs=229.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 997 (1226)
Q Consensus 918 e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s 997 (1226)
.+.++|+||||+++++++|++.|.+||.+|++|.+.|+ .||+|||||||||||||+||+|+|++.++.|+.+.+++|..
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 34789999999999999999999999999999999995 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000914 998 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 998 ~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
+|+|++...++.+|.+|+.++||||||||||.+.++|.+. +......+.+-+|+.+|||+.+. .+|-||+|||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCcc
Confidence 9999999999999999999999999999999999888653 33344556777899999999764 7899999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000914 1076 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1153 (1226)
Q Consensus 1076 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~ 1153 (1226)
.||||++| ||++.|+|++|+.+.|.+||+.+.+++++..++|++.||..|+|+||+||+++|.+|.+.|+|+-
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999972
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccc
Q 000914 1154 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1193 (1226)
Q Consensus 1154 ~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS 1193 (1226)
...+||+||.+|.+++...
T Consensus 377 ---------------------R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 377 ---------------------RDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred ---------------------cCeecHHHHHHHHHHHHhc
Confidence 2469999999999997643
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-44 Score=416.76 Aligned_cols=296 Identities=33% Similarity=0.589 Sum_probs=261.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 999 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 999 (1226)
.++|.+|||+++...+|.+.+.. +.+|+.|...|+ .|++|||||||||||||+||+|||.+++.||+.|+++++.+.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 67899999999999999999998 999999999984 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccC--CCcEEEEEecCCCCCC
Q 000914 1000 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFDL 1077 (1226)
Q Consensus 1000 ~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~--~~~VlVIaTTN~p~~L 1077 (1226)
.|++|+.++.+|..|+...|||+||||||.+.++|.. ...++.++++.+|+..||++.... ..+|+||||||+|+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999999999999999999999988876 677788999999999999987653 4789999999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH-
Q 000914 1078 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK- 1154 (1226)
Q Consensus 1078 d~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~- 1154 (1226)
|++++| ||++.|.+..|+..+|.+||+.+++...+..++|+..||..|.||.|+||..||.+|+..|++|+++....
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999999874431
Q ss_pred HHHHHHhhcc----------C-----------------------CCCCCCc--cccccccHHHHHHHHHHhccccccccc
Q 000914 1155 ERALALAENR----------A-----------------------SPPLYSS--VDVRPLKMDDFKYAHEQVCASVSSEST 1199 (1226)
Q Consensus 1155 ek~~~~~e~~----------~-----------------------~~~~~~~--~d~r~Lt~eDF~~Al~~v~pS~s~e~~ 1199 (1226)
....-.+++. + -+..++. ...-.|+++||..|+..++||..+++.
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 0000000000 0 0000111 123468999999999999999999999
Q ss_pred chhhhHHHHHHhcCCCccc
Q 000914 1200 NMNELLQWNELYGEGGSRK 1218 (1226)
Q Consensus 1200 ~~~~~v~W~DigG~~~~Rk 1218 (1226)
...|.|.|+||||++.+|.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~ 521 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRL 521 (802)
T ss_pred eecCCCChhhcccHHHHHH
Confidence 9999999999999998874
No 9
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-42 Score=415.20 Aligned_cols=453 Identities=33% Similarity=0.477 Sum_probs=362.7
Q ss_pred ceeeecCCCCCCCCCCC--CCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccCh
Q 000914 619 PTLRFDRSIPEGNNLGG--FCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNN 696 (1226)
Q Consensus 619 ~~v~fd~~~~~~~~l~~--~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi~die~~l~~~~ 696 (1226)
.+|.++.|+..|.++.+ .+.....+ ..-.-..+.+.|.......+..+|+-+.. ..|.|+|+++++.+.....
T Consensus 19 ~~v~~~g~~~~~~t~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~ii~~d~~~~~~~~~~ 93 (494)
T COG0464 19 KGVLLHGPPGTGKTLLARALANEGAEF--LSINGPEILSKYVGESELRLRELFEEAEK---LAPSIIFIDEIDALAPKRS 93 (494)
T ss_pred CCceeeCCCCCchhHHHHHHHhccCcc--cccCcchhhhhhhhHHHHHHHHHHHHHHH---hCCCeEeechhhhcccCcc
Confidence 37888889888888872 12212222 22233335567877778888888888877 7789999999999766332
Q ss_pred h--------hHHHHHHHHhcCC-CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchH
Q 000914 697 D--------AYGALKSKLENLP-SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPK 767 (1226)
Q Consensus 697 ~--------~~~~l~~~L~~l~-g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~ 767 (1226)
. ....+...++.+. +.|++++.++ .|+.++.
T Consensus 94 ~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~------------------------------~~~~~~~---------- 133 (494)
T COG0464 94 SDQGEVERRVVAQLLALMDGLKRGQVIVIGATN------------------------------RPDGLDP---------- 133 (494)
T ss_pred ccccchhhHHHHHHHHhcccccCCceEEEeecC------------------------------CccccCh----------
Confidence 2 3444444444443 4588888665 3333442
Q ss_pred HHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHH
Q 000914 768 ALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEK 845 (1226)
Q Consensus 768 ~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l~~~dL~~La~~tkg~sgadI~~ 845 (1226)
++++ +|+++++..+++..++..|+.+|+.+...+. ..++..++..+.||.++++..
T Consensus 134 ---------------------a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~ 191 (494)
T COG0464 134 ---------------------AKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP-PGTGKTLAARTVGKSGADLGA 191 (494)
T ss_pred ---------------------hHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc-cccHHHHHHhcCCccHHHHHH
Confidence 5544 8889999999999999999999987433222 778899999999999999999
Q ss_pred HHhhhhhcccccccCCCCCCCcccccccchHhhHHHHHhhhhhhhhhhhhhccccChhHHHHHhhcCCCCCCCCCCCccc
Q 000914 846 IVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDD 925 (1226)
Q Consensus 846 Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk~lv~~~e~~~~ll~~vIp~~e~~~tfdd 925 (1226)
+|+.+..+++.+.. ......+.+...+|..+...+.+. ..+....+.++|++
T Consensus 192 l~~~~~~~~~~r~~---------~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~~~~v~~~d 243 (494)
T COG0464 192 LAKEAALRELRRAI---------DLVGEYIGVTEDDFEEALKKVLPS-------------------RGVLFEDEDVTLDD 243 (494)
T ss_pred HHHHHHHHHHHhhh---------ccCcccccccHHHHHHHHHhcCcc-------------------cccccCCCCcceeh
Confidence 99999999988754 122344455555555443333221 01122334689999
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHH
Q 000914 926 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK 1005 (1226)
Q Consensus 926 I~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~ 1005 (1226)
++|++.+++.+++.+.+|+.+++.|.+.+ .+++.|+|||||||||||+||+++|++++.+|+.+..+++.++|+|++++
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHH
Confidence 99999999999999999999999998755 45678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--
Q 000914 1006 YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR-- 1083 (1226)
Q Consensus 1006 ~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr-- 1083 (1226)
.++.+|..|++.+|+||||||||.|++.+.... .....+++++++..|+++... .+|+||+|||+++.+|++++|
T Consensus 323 ~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~g 399 (494)
T COG0464 323 NIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPG 399 (494)
T ss_pred HHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCcc--CceEEEecCCCccccCHhhcccC
Confidence 999999999999999999999999998886533 223368999999999998755 569999999999999999999
Q ss_pred hccccccCCCCCHHHHHHHHHHHHhhcc--cCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 000914 1084 RLPRRLMVNLPDAPNREKIIRVILAKEE--LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALA 1161 (1226)
Q Consensus 1084 RF~~~I~l~lPd~eeR~eILk~lL~k~~--l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ek~~~~~ 1161 (1226)
||+..++|++|+.++|.+||+.++.... +..++++..+++.|+||+|+||..+|++|++.++++..
T Consensus 400 Rfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~------------ 467 (494)
T COG0464 400 RFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR------------ 467 (494)
T ss_pred ccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc------------
Confidence 9999999999999999999999999644 35789999999999999999999999999999988742
Q ss_pred hccCCCCCCCccccccccHHHHHHHHHHhccccc
Q 000914 1162 ENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1195 (1226)
Q Consensus 1162 e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s 1195 (1226)
..+++++||..|+++++|++.
T Consensus 468 -------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 468 -------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred -------------cCCccHHHHHHHHHhcCCCCC
Confidence 357999999999999999975
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-40 Score=385.82 Aligned_cols=330 Identities=29% Similarity=0.497 Sum_probs=267.5
Q ss_pred hCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhcc
Q 000914 775 LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHH 854 (1226)
Q Consensus 775 lf~~~i~i~~P~DeALLRrw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l~~~dL~~La~~tkg~sgadI~~Lv~~A~s~a 854 (1226)
+|-.++.++.|.-.++...+...+-..+- +....||+.++.+|.||..-|+.-+|..|...|
T Consensus 563 ~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~------------------~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a 624 (952)
T KOG0735|consen 563 LFQIVIALPAPAVTRRKEILTTIFSKNLS------------------DITMDDLDFLSVKTEGYLATDLVIFVERAIHEA 624 (952)
T ss_pred ceEEEEecCCcchhHHHHHHHHHHHhhhh------------------hhhhHHHHHHHHhcCCccchhHHHHHHHHHHHH
Confidence 67777778888766654333222111110 112346677999999999999999999999988
Q ss_pred cccccCCCCCCCcccccccchHhhHHHHHhhhhhhhhhhhhhccccChhHHHHHhhcCCCCCCCCCCCcccccCcHHHHH
Q 000914 855 FMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKD 934 (1226)
Q Consensus 855 l~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk~lv~~~e~~~~ll~~vIp~~e~~~tfddI~Gle~vk~ 934 (1226)
+. +.+.++.+ ..+..+|+..+....|.. +.++-.....+..|+||+|+.++++
T Consensus 625 ~l---eris~~~k--------lltke~f~ksL~~F~P~a----------------LR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 625 FL---ERISNGPK--------LLTKELFEKSLKDFVPLA----------------LRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred HH---HHhccCcc--------cchHHHHHHHHHhcChHH----------------hhhccccccCCCCceecccHHHHHH
Confidence 83 22222322 223345554433322211 1111111222478999999999999
Q ss_pred HHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHH
Q 000914 935 TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA 1014 (1226)
Q Consensus 935 ~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A 1014 (1226)
.|++.+++|.++|.+|.+..+. -..|||||||||||||+||.++|...++.||.+.+++|.++|+|.+|+.++.+|..|
T Consensus 678 ~l~~~i~~P~kyp~if~~~plr-~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA 756 (952)
T KOG0735|consen 678 VLEEVIEWPSKYPQIFANCPLR-LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERA 756 (952)
T ss_pred HHHHHHhccccchHHHhhCCcc-cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHh
Confidence 9999999999999999988754 458999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--hccccccCC
Q 000914 1015 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVN 1092 (1226)
Q Consensus 1015 ~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~ 1092 (1226)
+..+|||||+||+|++.++|+.. ......+++++++.+|||...- ..|.|+|+|.+|+.+|++++| |+++.++.+
T Consensus 757 ~~a~PCiLFFDEfdSiAPkRGhD-sTGVTDRVVNQlLTelDG~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~ 833 (952)
T KOG0735|consen 757 QSAKPCILFFDEFDSIAPKRGHD-STGVTDRVVNQLLTELDGAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCP 833 (952)
T ss_pred hccCCeEEEeccccccCcccCCC-CCCchHHHHHHHHHhhcccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCC
Confidence 99999999999999999988642 2345678999999999997643 679999999999999999999 999999999
Q ss_pred CCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000914 1093 LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1153 (1226)
Q Consensus 1093 lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~ 1153 (1226)
+|+..+|.+|++.+.......+++|++.+|.+|+||+|+||..|+-.|.+.++++++....
T Consensus 834 ~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 834 LPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred CCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998888889999999999999999999999999999999999876543
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-41 Score=366.27 Aligned_cols=299 Identities=36% Similarity=0.629 Sum_probs=255.5
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 911 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 911 ~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
++-|-...+++.|+|+.|++..|+.|++.|.+|+..|.+|... .+|.+||||||||||||++||+|+|.+.+..|+.|
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 3344445678999999999999999999999999999999744 67899999999999999999999999999999999
Q ss_pred ecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEe
Q 000914 991 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1070 (1226)
Q Consensus 991 ~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaT 1070 (1226)
+.++|+++|.|++|+.++++|++|+.+.|+||||||||.|++.|.. ++.+..+++..+|+.+|.|.... ...|+|+++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e-nEseasRRIKTEfLVQMqGVG~d-~~gvLVLgA 275 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE-NESEASRRIKTEFLVQMQGVGND-NDGVLVLGA 275 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC-CchHHHHHHHHHHHHhhhccccC-CCceEEEec
Confidence 9999999999999999999999999999999999999999887754 67788999999999999998764 578999999
Q ss_pred cCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcc-cCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHH
Q 000914 1071 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1149 (1226)
Q Consensus 1071 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~-l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli 1149 (1226)
||-|+.||.+++|||.++|+|++|+...|..+|+.++.... ...+.|+..|+.+|+||+|+||.-+++.|.+.++|++.
T Consensus 276 TNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 276 TNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred CCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 99999999999999999999999999999999999998754 34788999999999999999999999999999999987
Q ss_pred HHHHHHHHHHH---hhccCCCCCCCc---------------c--ccccccHHHHHHHHHHhcccccccccchhhhHHHHH
Q 000914 1150 EKEKKERALAL---AENRASPPLYSS---------------V--DVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNE 1209 (1226)
Q Consensus 1150 ~~~~~ek~~~~---~e~~~~~~~~~~---------------~--d~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~D 1209 (1226)
....+.+.-.- .+-...-..++. + -..+|||.||..++...+|.+... .+....+|..
T Consensus 356 sAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~--Dl~k~~~Ft~ 433 (439)
T KOG0739|consen 356 SATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNED--DLLKHEKFTE 433 (439)
T ss_pred hhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHH--HHHHHHHHHH
Confidence 65554321110 000000011110 1 134799999999999999999765 5567788988
Q ss_pred HhcCCC
Q 000914 1210 LYGEGG 1215 (1226)
Q Consensus 1210 igG~~~ 1215 (1226)
-+|.+|
T Consensus 434 dFGqEg 439 (439)
T KOG0739|consen 434 DFGQEG 439 (439)
T ss_pred hhccCC
Confidence 888765
No 12
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=365.26 Aligned_cols=370 Identities=22% Similarity=0.277 Sum_probs=275.1
Q ss_pred eEEEEcChhhhhc-------c----ChhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhh
Q 000914 681 LIVFVKDIEKSLT-------G----NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALL 747 (1226)
Q Consensus 681 ~Ilfi~die~~l~-------~----~~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~ 747 (1226)
-||.|||||. +| + .....+.|-++++... .||+|||=+|+
T Consensus 326 HIIIFDEiDA-ICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR-------------------------- 378 (744)
T KOG0741|consen 326 HIIIFDEIDA-ICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNR-------------------------- 378 (744)
T ss_pred eEEEehhhHH-HHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCc--------------------------
Confidence 3999999999 55 2 2445555555555443 39999999994
Q ss_pred cccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHH-hhhCCC-
Q 000914 748 DLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGL- 823 (1226)
Q Consensus 748 d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~-L~~n~l- 823 (1226)
+|-+ |||||| |+++|+|+.|||.++|.+|++|||. |++|++
T Consensus 379 ----~DlI-------------------------------DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l 423 (744)
T KOG0741|consen 379 ----KDLI-------------------------------DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKL 423 (744)
T ss_pred ----hhhH-------------------------------HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCC
Confidence 3333 459999 9999999999999999999999998 999987
Q ss_pred -CcccchhhhcccCCCCHHHHHHHHhhhhhcccccccCCCCCCCcccccccchHhhHHHHHhhhhhhhhhhhhhccccCh
Q 000914 824 -DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTE 902 (1226)
Q Consensus 824 -~~~dL~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk~lv~~ 902 (1226)
.++||++||.+||||+||||++||++|.|+|+.|+.....+........+++++.++||-.++.+++|+++ ..+
T Consensus 424 ~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG-----~se 498 (744)
T KOG0741|consen 424 SADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG-----ISE 498 (744)
T ss_pred CCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccC-----CCH
Confidence 99999999999999999999999999999999998765433444556778999999999999999999998 667
Q ss_pred hHHHHHhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000914 903 NEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 982 (1226)
Q Consensus 903 ~e~~~~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~e 982 (1226)
++++.....+++.+.... ..+.+.-..++.+ ++.++ ..+...+||+||||+|||+||..||..
T Consensus 499 e~l~~~~~~Gmi~~g~~v---------~~il~~G~llv~q-vk~s~-------~s~lvSvLl~Gp~~sGKTaLAA~iA~~ 561 (744)
T KOG0741|consen 499 EDLERFVMNGMINWGPPV---------TRILDDGKLLVQQ-VKNSE-------RSPLVSVLLEGPPGSGKTALAAKIALS 561 (744)
T ss_pred HHHHHHHhCCceeecccH---------HHHHhhHHHHHHH-hhccc-------cCcceEEEEecCCCCChHHHHHHHHhh
Confidence 889999999988876531 2233333333332 22222 345578999999999999999999999
Q ss_pred hCCcEEEEecCc-cccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccC
Q 000914 983 AGANFINISMSS-ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1061 (1226)
Q Consensus 983 lg~~fi~v~~s~-L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~ 1061 (1226)
.++||+.+-.++ +.+..-...-.+++.+|+.|++.+-+||++|+|++|+. .-+.+..+.+.+++.|+..+...+++.
T Consensus 562 S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD--~vpIGPRfSN~vlQaL~VllK~~ppkg 639 (744)
T KOG0741|consen 562 SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD--YVPIGPRFSNLVLQALLVLLKKQPPKG 639 (744)
T ss_pred cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc--ccccCchhhHHHHHHHHHHhccCCCCC
Confidence 999999977665 33322222345799999999999999999999999973 234455677889999999999887764
Q ss_pred CCcEEEEEecCCCCCCcH-HHHhhccccccCCCCCH-HHHHHHHHHHHhhcccCChhcHHHHHHHcCC----CcHHHHHH
Q 000914 1062 KERVLVLAATNRPFDLDE-AVVRRLPRRLMVNLPDA-PNREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKN 1135 (1226)
Q Consensus 1062 ~~~VlVIaTTN~p~~Ld~-aLlrRF~~~I~l~lPd~-eeR~eILk~lL~k~~l~~dvdl~~LA~~TeG----ySgsDL~~ 1135 (1226)
.+++|++||.+.+.|.+ .++..|+..++++..+. ++..+++.. .++..+.+...++....+ .-...|..
T Consensus 640 -~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~----~n~fsd~~~~~~~~~~~~~~~~vgIKklL~ 714 (744)
T KOG0741|consen 640 -RKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE----LNIFSDDEVRAIAEQLLSKKVNVGIKKLLM 714 (744)
T ss_pred -ceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH----ccCCCcchhHHHHHHHhccccchhHHHHHH
Confidence 68999999988766654 56668987776655443 333343332 233444444444444332 22355556
Q ss_pred HHHHHH
Q 000914 1136 LCVTAA 1141 (1226)
Q Consensus 1136 L~~~Aa 1141 (1226)
|+++|.
T Consensus 715 lie~a~ 720 (744)
T KOG0741|consen 715 LIEMAR 720 (744)
T ss_pred HHHHHh
Confidence 666654
No 13
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-37 Score=353.21 Aligned_cols=250 Identities=36% Similarity=0.586 Sum_probs=227.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 000914 917 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 917 ~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~ 996 (1226)
...+++|+|+-|.++.|++|+|.|.+ |+.|+.|.+.| .+-|+||||+||||||||+||||+|.+++.||+...++++.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 34478999999999999999999985 99999999987 56779999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC
Q 000914 997 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1076 (1226)
Q Consensus 997 s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 1076 (1226)
..++|.+.+.++.+|..|++.+||||||||||.+.++|.+... ...++.+++|+..|||+..+ ..|+||++||.|+.
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~-~y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~ 451 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ-HYAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEA 451 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH-HHHHHHHHHHHHHhcCcCcC--CceEEEeccCChhh
Confidence 9999999999999999999999999999999999888865444 48899999999999999765 68999999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000914 1077 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1154 (1226)
Q Consensus 1077 Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ 1154 (1226)
||+++.| ||+++|.++.||...|.+||+.++.+..+..++|+..||+-|.||+|+||.||++.|+..|..+
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d------- 524 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD------- 524 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc-------
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999876553
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 000914 1155 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1197 (1226)
Q Consensus 1155 ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e 1197 (1226)
....|+|.|++-|.+++-.-.-+.
T Consensus 525 -------------------ga~~VtM~~LE~akDrIlMG~ERk 548 (752)
T KOG0734|consen 525 -------------------GAEMVTMKHLEFAKDRILMGPERK 548 (752)
T ss_pred -------------------CcccccHHHHhhhhhheeeccccc
Confidence 124589999999998875544333
No 14
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.4e-35 Score=354.19 Aligned_cols=411 Identities=22% Similarity=0.372 Sum_probs=298.0
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhccChhhHHHHHHH---HhcCCCCEEEEEeccCCCCccccCCCCCceeeccC
Q 000914 664 AINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSK---LENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFG 740 (1226)
Q Consensus 664 ~~~~l~evl~~es~~~P~Ilfi~die~~l~~~~~~~~~l~~~---L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~ 740 (1226)
.+++| +.+......+|.|+.++|.+.|+. +......|+.. +...+..+||++....
T Consensus 67 p~~al-~~i~~~~~~~~~~~vl~d~h~~~~-~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~------------------- 125 (489)
T CHL00195 67 PLQAL-EFIEKLTPETPALFLLKDFNRFLN-DISISRKLRNLSRILKTQPKTIIIIASELN------------------- 125 (489)
T ss_pred HHHHH-HHHHhcCCCCCcEEEEecchhhhc-chHHHHHHHHHHHHHHhCCCEEEEEcCCCC-------------------
Confidence 44555 344443344689999999999883 33333333332 3333445555555431
Q ss_pred cchhhhhcccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHHhhh
Q 000914 741 SNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSR 820 (1226)
Q Consensus 741 ~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRrw~~qLe~dLpdlk~R~nIl~IhT~L~~ 820 (1226)
.|..+.+ + --.+++++|+.+.+..-..+ +-.. ..
T Consensus 126 ----------~p~el~~-----------------~-~~~~~~~lP~~~ei~~~l~~-~~~~-----------------~~ 159 (489)
T CHL00195 126 ----------IPKELKD-----------------L-ITVLEFPLPTESEIKKELTR-LIKS-----------------LN 159 (489)
T ss_pred ----------CCHHHHh-----------------c-eeEEeecCcCHHHHHHHHHH-HHHh-----------------cC
Confidence 4444432 2 23568889987776443221 1100 01
Q ss_pred CCCCcccchhhhcccCCCCHHHHHHHHhhhhhcccccccCCCCCCCcccccccchHhhHHHHHhhhhhhhhhhhhhcccc
Q 000914 821 NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVV 900 (1226)
Q Consensus 821 n~l~~~dL~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk~lv 900 (1226)
..++...++.|+..+.|++-.+++.++..+... .+ .++.+.+...... -+. ++
T Consensus 160 ~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~-----------~~--~~~~~~~~~i~~~-------k~q-------~~ 212 (489)
T CHL00195 160 IKIDSELLENLTRACQGLSLERIRRVLSKIIAT-----------YK--TIDENSIPLILEE-------KKQ-------II 212 (489)
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------cC--CCChhhHHHHHHH-------HHH-------HH
Confidence 134667788999999999999999988764321 11 1222222221110 000 00
Q ss_pred ChhHHHHHhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 000914 901 TENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 980 (1226)
Q Consensus 901 ~~~e~~~~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA 980 (1226)
.. ..++.......+|++|+|++.+|+.|.+..... ...+...++ .+++||||+||||||||++|++||
T Consensus 213 ~~--------~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA 280 (489)
T CHL00195 213 SQ--------TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIA 280 (489)
T ss_pred hh--------hccccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHH
Confidence 00 011122223578999999999999998765421 222233453 567999999999999999999999
Q ss_pred HHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000914 981 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1060 (1226)
Q Consensus 981 ~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k 1060 (1226)
++++.+|+.++++.+.+.++|+++..++.+|..|+..+||||||||||.++..+...+......+++.+|+..++.
T Consensus 281 ~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~---- 356 (489)
T CHL00195 281 NDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE---- 356 (489)
T ss_pred HHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc----
Confidence 9999999999999999999999999999999999999999999999999987655444556677888888888764
Q ss_pred CCCcEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhccc--CChhcHHHHHHHcCCCcHHHHHHH
Q 000914 1061 DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL--ASDVDLEGIANMADGYSGSDLKNL 1136 (1226)
Q Consensus 1061 ~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l--~~dvdl~~LA~~TeGySgsDL~~L 1136 (1226)
...+|+||||||+++.||++++| ||++.++|++|+.++|.+||+.++.+... ..+.++..||..|+||+|+||.++
T Consensus 357 ~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~l 436 (489)
T CHL00195 357 KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQS 436 (489)
T ss_pred CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHH
Confidence 23679999999999999999998 99999999999999999999999998643 257899999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhHHHHHHh
Q 000914 1137 CVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELY 1211 (1226)
Q Consensus 1137 ~~~Aa~~aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~Dig 1211 (1226)
|.+|+..+..+ .++++.+||..|++++.|++......+..++.|-.-+
T Consensus 437 v~eA~~~A~~~---------------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 437 IIEAMYIAFYE---------------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHHHHc---------------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 99998776542 1569999999999999999877766777889997654
No 15
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-36 Score=348.13 Aligned_cols=279 Identities=47% Similarity=0.807 Sum_probs=253.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 000914 919 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 998 (1226)
Q Consensus 919 ~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 998 (1226)
..+.|+|+.|++.+++.+.+++.+|+.++++|.. +..|.+++||+||||+|||+|++|||.+.++.|+.++++.|.++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3688999999999999999999999999999974 46788999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000914 999 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1078 (1226)
Q Consensus 999 ~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1078 (1226)
|+|+.++.++.+|..|+..+|+||||||||+++..| .+..++..++++.+|+..+++.......+|+||||||+|+.+|
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999988 6678888899999999999999988888999999999999999
Q ss_pred HHHHhhccccccCCCCCHHHHHHHHHHHHhhc-ccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000914 1079 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1157 (1226)
Q Consensus 1079 ~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~-~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ek~ 1157 (1226)
++++|||.++++|++|+.+.|..+|+.++.+. ....+.+++.|+++|+||+++||.++|..|++..++++......+
T Consensus 305 ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~-- 382 (428)
T KOG0740|consen 305 EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE-- 382 (428)
T ss_pred HHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh--
Confidence 99999999999999999999999999999987 344778999999999999999999999999999998864321110
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCC
Q 000914 1158 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1215 (1226)
Q Consensus 1158 ~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~ 1215 (1226)
....+..|+++..||..|++.++|+++.+ .+..+..|+..+|...
T Consensus 383 -----------~~~~~~~r~i~~~df~~a~~~i~~~~s~~--~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 383 -----------FIDADKIRPITYPDFKNAFKNIKPSVSLE--GLEKYEKWDKEFGSSE 427 (428)
T ss_pred -----------hcchhccCCCCcchHHHHHHhhccccCcc--ccchhHHHhhhhcccc
Confidence 12235678999999999999999999887 5667899999999754
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=316.62 Aligned_cols=243 Identities=33% Similarity=0.597 Sum_probs=223.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 000914 919 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 998 (1226)
Q Consensus 919 ~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 998 (1226)
+.-+++||||++.++++|.+.+.+|+.+++.|.+.++ +||+|+|+|||||||||.+|+|.|.+.+..|..+.++.|...
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 4567999999999999999999999999999999985 577999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC---chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000914 999 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 999 ~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~---~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
|+|.+.+.++..|.+|+..+|+||||||+|.+..+|... +..+ ..+.+-+|+.+++|+.+. .+|-||++||+.+
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE-VQRTMLELLNQLDGFss~--~~vKviAATNRvD 321 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE-VQRTMLELLNQLDGFSSD--DRVKVIAATNRVD 321 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH-HHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence 999999999999999999999999999999998887653 3333 445667889999999865 6799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000914 1076 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1153 (1226)
Q Consensus 1076 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~ 1153 (1226)
.|||+++| |+++.|+|+.|+.+.|.+|++.+.+++.+..++++++||+.|++|+|++++.+|.+|.+.++|+-
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~----- 396 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG----- 396 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999872
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000914 1154 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1191 (1226)
Q Consensus 1154 ~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~ 1191 (1226)
...++.+||.+++.+|+
T Consensus 397 ---------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ---------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred ---------------------cccccHHHHHHHHHHHH
Confidence 24689999999998876
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-34 Score=304.19 Aligned_cols=243 Identities=35% Similarity=0.615 Sum_probs=222.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 999 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 999 (1226)
..+++-+||++.+++++++.+.+|..+|++|...++..| +|+|||||||||||.||+++|++..+.|+.+++++|..+|
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 457888999999999999999999999999999998766 8999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCC
Q 000914 1000 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1077 (1226)
Q Consensus 1000 ~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 1077 (1226)
+|++...++.+|.+|+.++|+|||+||||++...|.. .+......+.+-+|+.++||+... .++-||++||+.+-|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridil 299 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDIL 299 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccccc
Confidence 9999999999999999999999999999999866532 233444556677899999999765 579999999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000914 1078 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1155 (1226)
Q Consensus 1078 d~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~e 1155 (1226)
|++++| |+++.|+|++|+.+.|.+||+.+-+++++...+++..+|....|-+|++++.+|.+|.+.|+|+.
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999872
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000914 1156 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1191 (1226)
Q Consensus 1156 k~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~ 1191 (1226)
...+|.+||+-|..++-
T Consensus 373 -------------------rvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 373 -------------------RVHVTQEDFEMAVAKVM 389 (404)
T ss_pred -------------------hccccHHHHHHHHHHHH
Confidence 13589999999988864
No 18
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-34 Score=304.52 Aligned_cols=245 Identities=37% Similarity=0.627 Sum_probs=224.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 000914 917 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 917 ~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~ 996 (1226)
..+.+++.||||++-+|+++++.+.+|+.+.++|.+.|+ .||+|||||||||||||+||+|+|++..+.|+.+.++++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigi-dpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGI-DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCC-CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 456789999999999999999999999999999999985 5779999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000914 997 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1074 (1226)
Q Consensus 997 s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p 1074 (1226)
.+|.|++...++.+|.+|+..+|+||||||||.+..+|... +......+++-+|+.+|||+... .+|-||++||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCcc
Confidence 99999999999999999999999999999999999887652 33345567888999999999764 679999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000914 1075 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1152 (1226)
Q Consensus 1075 ~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~ 1152 (1226)
+.|||+++| |+++.|+|++|+..+++-+|..+..++++.+++|++.+..+-+..+++||..+|++|.+.++|+-
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n---- 380 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN---- 380 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999961
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 000914 1153 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1190 (1226)
Q Consensus 1153 ~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v 1190 (1226)
.-.+...||++|.+.+
T Consensus 381 ----------------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 ----------------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ----------------------ceeeeHHHHHHHHHhh
Confidence 1246778999987764
No 19
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-35 Score=314.59 Aligned_cols=243 Identities=39% Similarity=0.648 Sum_probs=223.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 999 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 999 (1226)
.-+|.||||++.+++++++.+.+||.+|+.|...+ .+||+||+|||+||||||.||+|+|+...+.|+++-+++|..+|
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemG-ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcC-CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 45899999999999999999999999999999998 46779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCC
Q 000914 1000 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1077 (1226)
Q Consensus 1000 ~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 1077 (1226)
.|++.+.++++|..|..++|+|+||||||.+..+|.+ .+......+.+-+|+++++|+.. +..|-||++||+.+.|
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnrie~L 337 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIETL 337 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEeccccccc
Confidence 9999999999999999999999999999999888754 23333445556689999999976 4789999999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000914 1078 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1155 (1226)
Q Consensus 1078 d~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~e 1155 (1226)
||+++| |+++.|.|+.||...+..||..+..++.+..+++++.+...-+.++|+||+++|.+|.+.|+|+.
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999873
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000914 1156 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1191 (1226)
Q Consensus 1156 k~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~ 1191 (1226)
...++++||.+|.+.|-
T Consensus 411 -------------------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 -------------------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred -------------------HhhccHHHHHHHHHHHH
Confidence 13589999999998864
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1e-33 Score=302.94 Aligned_cols=242 Identities=31% Similarity=0.485 Sum_probs=214.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 999 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 999 (1226)
..+|+|++|+++.|+..+-++. .|..|+.|..+. |++||+|||||||||++|+|+|++++.||+.+...+|.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 5789999999999988765554 588999998764 58999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcH
Q 000914 1000 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1079 (1226)
Q Consensus 1000 ~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1079 (1226)
+|++...++.+|+.|++.+|||+||||+|.+.-.|.-.........++|.|+..|||+. .+..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999997655433333345678999999999997 4578999999999999999
Q ss_pred HHHhhccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHH-HHHHHHHhhhhHHHHHHHHHHHHH
Q 000914 1080 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK-NLCVTAAHCPIREILEKEKKERAL 1158 (1226)
Q Consensus 1080 aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~-~L~~~Aa~~aireli~~~~~ek~~ 1158 (1226)
++++||...|+|.+|+.++|.+|++.+++++++.-+.++..++..|.|+||+||. .++..|.++|+.+-
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed---------- 339 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED---------- 339 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc----------
Confidence 9999999999999999999999999999999999899999999999999999997 56778888877752
Q ss_pred HHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000914 1159 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1194 (1226)
Q Consensus 1159 ~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~ 1194 (1226)
...++.+||..|+++.++..
T Consensus 340 ----------------~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 340 ----------------REKVEREDIEKALKKERKRR 359 (368)
T ss_pred ----------------hhhhhHHHHHHHHHhhcccc
Confidence 23478899999999866554
No 21
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=341.08 Aligned_cols=248 Identities=42% Similarity=0.695 Sum_probs=226.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 000914 917 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 917 ~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~ 996 (1226)
.+.+++|+|+.|.++++++|+|+|.. |++|+.|.+.| .+.|+|+||+||||||||.||+|+|.+++.||+.++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 34578999999999999999999985 99999999988 56779999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCC---CCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC
Q 000914 997 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1073 (1226)
Q Consensus 997 s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~---~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~ 1073 (1226)
..+.|.....++.+|..|+..+|+||||||||.+...|. ..+.+......+++|+..|||+... ..|+|||+||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCC
Confidence 999998899999999999999999999999999988774 3344555567899999999999765 67999999999
Q ss_pred CCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHH
Q 000914 1074 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1150 (1226)
Q Consensus 1074 p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~ 1150 (1226)
++.||++++| ||++.|++++|+...|..|++.+++..++. +++++..||.+|.||+|+||.++|++|+..+.|+
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~--- 536 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK--- 536 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh---
Confidence 9999999999 999999999999999999999999998885 8889999999999999999999999999999886
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000914 1151 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1194 (1226)
Q Consensus 1151 ~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~ 1194 (1226)
....|+..||..|++++....
T Consensus 537 -----------------------~~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 537 -----------------------GLREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred -----------------------ccCccchhhHHHHHHHHhccc
Confidence 235689999999999776554
No 22
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-34 Score=336.38 Aligned_cols=263 Identities=38% Similarity=0.604 Sum_probs=245.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 999 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 999 (1226)
.++ ++++|.......+++.+.+|+.++..|...+ .++++++|+|||||||||++++++|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 345 6899999999999999999999999999888 45779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000914 1000 FGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1078 (1226)
Q Consensus 1000 ~Ge~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1078 (1226)
.|+.++.++.+|+.|.+++ |+||||||||.+++++..... ...++..+++.+++++.. ..+++||++||+|+.|+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876444 678899999999999874 37899999999999999
Q ss_pred HHHHh-hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000914 1079 EAVVR-RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1157 (1226)
Q Consensus 1079 ~aLlr-RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ek~ 1157 (1226)
++++| ||++.+.+..|+..+|.+|++.+++++++.++.++..+|..|+||+|+||..+|..|.+.++|+
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999888899999999999999999999999999887774
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCCcccc
Q 000914 1158 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKR 1219 (1226)
Q Consensus 1158 ~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~~Rkk 1219 (1226)
++++|..|+..++||..++.....+++.|+||||++.+|++
T Consensus 405 ---------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~e 445 (693)
T KOG0730|consen 405 ---------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRE 445 (693)
T ss_pred ---------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHH
Confidence 67899999999999999999988899999999999999864
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6.1e-33 Score=325.16 Aligned_cols=246 Identities=38% Similarity=0.615 Sum_probs=221.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 997 (1226)
Q Consensus 918 e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s 997 (1226)
.+.++|+||+|++.++++|++.+.+|+.+|+.|.+.++ .+++++||+||||||||+||+++|++++.+|+.+.++.+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 44789999999999999999999999999999998885 46699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000914 998 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 998 ~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
.|.|+.+..++.+|..|+...|+||||||||.++..+.+. +......+++.+++..++++... .+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 9999999999999999999999999999999998766432 22334557778888888887543 5699999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000914 1076 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1153 (1226)
Q Consensus 1076 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~ 1153 (1226)
.||++++| ||++.|+|++|+.++|..||+.++.+..+..++++..++..|+||+|+||.++|++|.+.++++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~----- 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN----- 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999999 99999999999999999999999999888899999999999999999999999999999988761
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 000914 1154 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1192 (1226)
Q Consensus 1154 ~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~p 1192 (1226)
...++++||..|++++..
T Consensus 371 ---------------------~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 371 ---------------------RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred ---------------------CCccCHHHHHHHHHHHHh
Confidence 136999999999998653
No 24
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-33 Score=296.59 Aligned_cols=248 Identities=33% Similarity=0.580 Sum_probs=224.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 997 (1226)
Q Consensus 918 e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s 997 (1226)
.+.+++.|+||..+.++.|++.+.+|+.+|+.|.+.++ .||+|||||||||||||.+|+|+|+..++.|+.+-+++|..
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgi-dppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGI-DPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCC-CCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 35789999999999999999999999999999999995 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000914 998 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 998 ~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
+|+|++...++.+|++|+....||||+||||.+.+.|... +......+.+-+++.+++|+.+. +++-|+++||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCC
Confidence 9999999999999999999999999999999999888654 23334455667889999999764 7899999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000914 1076 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1153 (1226)
Q Consensus 1076 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~ 1153 (1226)
.||++++| |+++.++|.+|+.+.|..||+.+.+.+....++-++.||..+..-+|++|+.+|.+|.+.++|..
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar----- 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----- 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH-----
Confidence 99999999 99999999999999999999999999998899999999999999999999999999999998852
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000914 1154 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1194 (1226)
Q Consensus 1154 ~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~ 1194 (1226)
.+..|-.||.+|..++...+
T Consensus 403 ---------------------rk~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 403 ---------------------RKVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred ---------------------hhhhhHHHHHHHHHHHHHHH
Confidence 12467789999998876443
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.3e-32 Score=318.37 Aligned_cols=250 Identities=41% Similarity=0.699 Sum_probs=222.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 000914 919 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 998 (1226)
Q Consensus 919 ~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 998 (1226)
+.++|++|+|++++++.|.+.+.+|+.+++.|...++ .++++|||+||||||||++|+++|++++.+|+.++++++...
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 4678999999999999999999999999999998885 456899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC
Q 000914 999 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1076 (1226)
Q Consensus 999 ~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 1076 (1226)
|.|+.+..++.+|..|+...|+||||||||.+++.+.+.. ......+.+.+++..++++... .+++||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR--GNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC--CCEEEEEecCChhh
Confidence 9999999999999999999999999999999987664322 1223345566777778876533 57999999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000914 1077 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1154 (1226)
Q Consensus 1077 Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ 1154 (1226)
++++++| ||+..|+|++|+.++|.+||+.++.+..+..+.++..||..|+||+|+||.++|++|++.++++
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~------- 355 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD------- 355 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc-------
Confidence 9999998 9999999999999999999999999888888899999999999999999999999999988775
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 000914 1155 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1197 (1226)
Q Consensus 1155 ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e 1197 (1226)
....++++||.+|+++++++...+
T Consensus 356 -------------------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 356 -------------------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred -------------------CCCCcCHHHHHHHHHHHhcccccc
Confidence 113589999999999999987665
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=3.1e-31 Score=312.94 Aligned_cols=245 Identities=38% Similarity=0.624 Sum_probs=218.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 000914 919 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 998 (1226)
Q Consensus 919 ~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 998 (1226)
+..+|+||+|++++++.|.+++.+|+.++++|...++. +++++||+||||||||++|++||++++.+|+.+.++++.+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 35799999999999999999999999999999988854 66899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC
Q 000914 999 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1076 (1226)
Q Consensus 999 ~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 1076 (1226)
|.|+.+..++.+|..|....|+||||||||.++.++.. .+......+.+.+++..++++... .++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCChHH
Confidence 99999999999999999999999999999999876642 122233445666788888887533 57999999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000914 1077 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1154 (1226)
Q Consensus 1077 Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ 1154 (1226)
|+++++| ||++.|+|+.|+.++|.+||+.++.+..+..++++..++..++||+++||.++|++|++.|+++.
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------ 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------ 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 9999998 99999999999999999999999999888889999999999999999999999999999988861
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 000914 1155 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1192 (1226)
Q Consensus 1155 ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~p 1192 (1226)
...|+++||..|++++..
T Consensus 409 --------------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 --------------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred --------------------CCccCHHHHHHHHHHHHh
Confidence 135999999999999753
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=7.3e-31 Score=316.99 Aligned_cols=269 Identities=39% Similarity=0.600 Sum_probs=229.5
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 000914 917 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 917 ~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~ 996 (1226)
..+.++|+||+|++++++++.+.+.. +.+++.|.+.+ ..+++|+||+||||||||+||++||.+++.+|+.++++++.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 34578999999999999999998875 88899888776 45668999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000914 997 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1074 (1226)
Q Consensus 997 s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p 1074 (1226)
..+.|..++.++.+|..|+...|+||||||||.++..+... ........++++|+..++++... .+++||+|||++
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCCh
Confidence 88999999999999999999999999999999998766532 22344567888999999987543 569999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000914 1075 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1152 (1226)
Q Consensus 1075 ~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~ 1152 (1226)
+.||++++| ||++.+++++|+.++|.+||+.++....+..+.++..+|..+.||+++||.++|++|+..+.++
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~----- 278 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK----- 278 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999999877778889999999999999999999999998776553
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCC
Q 000914 1153 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1215 (1226)
Q Consensus 1153 ~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~ 1215 (1226)
....++.+||..|++++..........+.+..+|...+.+.|
T Consensus 279 ---------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 279 ---------------------NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAG 320 (495)
T ss_pred ---------------------CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh
Confidence 124689999999999886554433344566667776665444
No 28
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4e-31 Score=316.90 Aligned_cols=251 Identities=41% Similarity=0.624 Sum_probs=228.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 997 (1226)
Q Consensus 918 e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s 997 (1226)
...++|.|+.|.++.++++.+.|.. ++.|..|...|. +-|+|+||+||||||||+||+|+|.+++.||+.++.+++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 3478999999999999999999984 899999988885 67799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000914 998 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 998 ~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
.++|-+...+|.+|..|++.+||||||||||.+...|.. .+.+....+.+++++..|||+.. +..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcc
Confidence 999999999999999999999999999999999877642 34556667899999999999873 47899999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000914 1076 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1153 (1226)
Q Consensus 1076 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~ 1153 (1226)
.||++++| ||++.|.++.||...|++|++.++++..+..++++..+|+.|.|++|+||.+++++|+..+.|+
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~------ 373 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR------ 373 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999998886
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccc
Q 000914 1154 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1198 (1226)
Q Consensus 1154 ~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e~ 1198 (1226)
....++|.||..|++++..-..+..
T Consensus 374 --------------------n~~~i~~~~i~ea~drv~~G~erks 398 (596)
T COG0465 374 --------------------NKKEITMRDIEEAIDRVIAGPERKS 398 (596)
T ss_pred --------------------cCeeEeccchHHHHHHHhcCcCcCC
Confidence 2256899999999999865554433
No 29
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=4.7e-30 Score=323.12 Aligned_cols=289 Identities=37% Similarity=0.628 Sum_probs=247.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 000914 919 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 998 (1226)
Q Consensus 919 ~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~ 998 (1226)
..++|++|+|++++++.+++.+.+|+.+|++|...++ .+++++||+||||||||+||++||++++.+|+.++++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3679999999999999999999999999999998885 466899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000914 999 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1078 (1226)
Q Consensus 999 ~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1078 (1226)
+.|..+..++.+|..|....|+||||||||.+++.+.... .+...+++++|+..++++.. ...++||++||+++.++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999987765432 23445678888888888754 36799999999999999
Q ss_pred HHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000914 1079 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1156 (1226)
Q Consensus 1079 ~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ek 1156 (1226)
+++++ ||+..+.+++|+.++|.+||+.+.....+..+.++..++..++||+++||..+|+.|++.++++.+.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 9999999999999999999999988887778889999999999999999999999999999988654221100
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhhHHHHHHhcCCCccc
Q 000914 1157 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1218 (1226)
Q Consensus 1157 ~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~~Rk 1218 (1226)
.....+ ........++++||..|+..++|+...+.....+.+.|+||+|++.+|+
T Consensus 409 -----~~~~i~--~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~ 463 (733)
T TIGR01243 409 -----EAEEIP--AEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQ 463 (733)
T ss_pred -----cccccc--chhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHH
Confidence 000000 0011234689999999999999999888777778999999999988875
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=3.6e-29 Score=291.45 Aligned_cols=244 Identities=44% Similarity=0.720 Sum_probs=213.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 997 (1226)
Q Consensus 918 e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s 997 (1226)
.+.++|++|+|++++++.|.+++..|+.+++.|...++ .+++|+||+||||||||++|+++|++++.+|+.+.+..+..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 34678999999999999999999999999999998885 45689999999999999999999999999999999999888
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000914 998 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 998 ~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
.++|+....++.+|..|+...|+||||||+|.++..+.... ......+.+.+++..++++.. ..+++||+|||+++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 89999999999999999999999999999999986654321 122234555667777777643 25799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000914 1076 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1153 (1226)
Q Consensus 1076 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~ 1153 (1226)
.++++++| ||++.+.|+.|+.++|.+||+.++....+..++++..++..++||+|+||.++|.+|.+.++++.
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~----- 347 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE----- 347 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999998 99999999999999999999999988887778899999999999999999999999999988751
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 000914 1154 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1190 (1226)
Q Consensus 1154 ~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v 1190 (1226)
...|+.+||.+|++++
T Consensus 348 ---------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 ---------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred ---------------------CCccCHHHHHHHHHHh
Confidence 1359999999999875
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=1.2e-28 Score=294.71 Aligned_cols=272 Identities=29% Similarity=0.491 Sum_probs=211.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------F 987 (1226)
Q Consensus 918 e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~----------f 987 (1226)
.+.++|++|+|++..++++++.+.+|+.+++.|...++ .+++|+|||||||||||++|+++|++++.+ |
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 34689999999999999999999999999999998884 466899999999999999999999998544 6
Q ss_pred EEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCC
Q 000914 988 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1063 (1226)
Q Consensus 988 i~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~ 1063 (1226)
+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||+|.++..+...........++++|+..++++... .
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~--~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL--D 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--C
Confidence 677778899999999999999999998764 6999999999999987765444455577889999999998643 5
Q ss_pred cEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhc-ccC---------ChhcHHHHHHH-------
Q 000914 1064 RVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE-ELA---------SDVDLEGIANM------- 1124 (1226)
Q Consensus 1064 ~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~-~l~---------~dvdl~~LA~~------- 1124 (1226)
+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++... .+. ...++..+++.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999 999999999999999999999998752 221 11122222211
Q ss_pred ----------------------cCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHH
Q 000914 1125 ----------------------ADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDD 1182 (1226)
Q Consensus 1125 ----------------------TeGySgsDL~~L~~~Aa~~aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eD 1182 (1226)
++.+||++|.++|.+|...++++.+. ...+.++++|
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~----------------------~~~~~~~~~~ 470 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT----------------------GGQVGLRIEH 470 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh----------------------cCCcCcCHHH
Confidence 23456666666666666666555431 1124789999
Q ss_pred HHHHHHHh-cccccccccchhhhHHHHHHhcCCCc
Q 000914 1183 FKYAHEQV-CASVSSESTNMNELLQWNELYGEGGS 1216 (1226)
Q Consensus 1183 F~~Al~~v-~pS~s~e~~~~~~~v~W~DigG~~~~ 1216 (1226)
+..|+..- ..+ .+..+...-..|..|.|..|-
T Consensus 471 l~~a~~~e~~~~--~~~~~~~~~~~w~~~~~~~~~ 503 (512)
T TIGR03689 471 LLAAVLDEFRES--EDLPNTTNPDDWARISGKKGE 503 (512)
T ss_pred HHHHHHHhhccc--ccCCCCCCHHHHhhhhCCCCC
Confidence 99998763 322 222233334679999887653
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.2e-28 Score=303.00 Aligned_cols=243 Identities=39% Similarity=0.608 Sum_probs=212.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 997 (1226)
Q Consensus 918 e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s 997 (1226)
+..++|+|++|++++++++.+.+.. +..++.|...+ ..+++++||+||||||||+||+++|.+++.+|+.++++++..
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g-~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 3467999999999999999998875 78888887776 456689999999999999999999999999999999999888
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000914 998 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 998 ~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
.+.|.....++.+|..|+...|+||||||||.+...+.. .+.+.....++++|+..++++.. +.+++||+|||+++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~ 332 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVD 332 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchH
Confidence 888888888999999999999999999999999866543 22344456778889999988754 35799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000914 1076 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1153 (1226)
Q Consensus 1076 ~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~ 1153 (1226)
.+|++++| ||++.+.+++|+.++|.+||+.++....+..+.++..+|..+.||+++||.++|++|+..+.++
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~------ 406 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR------ 406 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999999877778899999999999999999999999998876654
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 000914 1154 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1190 (1226)
Q Consensus 1154 ~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v 1190 (1226)
....++++||..|++++
T Consensus 407 --------------------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 407 --------------------KKATITMKEIDTAIDRV 423 (638)
T ss_pred --------------------CCCCcCHHHHHHHHHHH
Confidence 12458899999998887
No 33
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.1e-29 Score=271.93 Aligned_cols=243 Identities=35% Similarity=0.667 Sum_probs=215.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 999 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 999 (1226)
..+|++++|...+..++++.+..|+..|++|.+.++ +||.++|||||||+|||.+|+++|..+|++|+.+..+.+.+++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 578999999999999999999999999999998884 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCC
Q 000914 1000 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1077 (1226)
Q Consensus 1000 ~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 1077 (1226)
.|++.+.|+..|..|+.+.|||||+||||.+.+++.+.+ ......+.+-+++..|+++.. ..+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcccc
Confidence 999999999999999999999999999999998875432 222334455567778888754 3679999999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000914 1078 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1155 (1226)
Q Consensus 1078 d~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~e 1155 (1226)
+++++| |+++.+++++|+...|..|++.+.......-+++.+.+.+..+|+.|.|+.+.|++|-+.++++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~------- 357 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE------- 357 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh-------
Confidence 999999 99999999999999999999999888887888999999999999999999999999998888762
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000914 1156 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1191 (1226)
Q Consensus 1156 k~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~ 1191 (1226)
...+-+|||..+..++.
T Consensus 358 -------------------~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 358 -------------------RDEVLHEDFMKLVRKQA 374 (388)
T ss_pred -------------------hHHHhHHHHHHHHHHHH
Confidence 12356788888877653
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-28 Score=302.74 Aligned_cols=266 Identities=35% Similarity=0.562 Sum_probs=224.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISM 992 (1226)
Q Consensus 918 e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v~~ 992 (1226)
+..+.|+++||++.++.+|++.|..|+.+|+.|...++. ||+|||++||||||||..|+++|..+ ...|+.-.+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 446899999999999999999999999999999998865 66999999999999999999999887 466777888
Q ss_pred CccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecC
Q 000914 993 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1072 (1226)
Q Consensus 993 s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN 1072 (1226)
++..++|+|+.+..++-+|+.|++.+|+|||+||||-|.+.|....++ ....++.+|+.+|+|+... +.|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEq-ih~SIvSTLLaLmdGldsR--gqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQ-IHASIVSTLLALMDGLDSR--GQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHH-hhhhHHHHHHHhccCCCCC--CceEEEcccC
Confidence 999999999999999999999999999999999999998887654333 4467889999999999764 7899999999
Q ss_pred CCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcc-cCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHH
Q 000914 1073 RPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE-LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1149 (1226)
Q Consensus 1073 ~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~-l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli 1149 (1226)
+++.++++++| ||++.++|++|+.+.|.+|+..+..+.. .....-+..||..|.||.|+||+.||.+|++.++++-.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999 9999999999999999999999877643 22556688999999999999999999999999988732
Q ss_pred HHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 000914 1150 EKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1197 (1226)
Q Consensus 1150 ~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e 1197 (1226)
..... +..+. .-......++..||..|+.++.|+..+.
T Consensus 495 Pq~y~------s~~kl----~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 495 PQIYS------SSDKL----LIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred Ceeec------ccccc----cccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 11100 00000 0111233488899999999998888764
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=1.3e-27 Score=296.10 Aligned_cols=250 Identities=38% Similarity=0.606 Sum_probs=216.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 000914 917 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 917 ~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~ 996 (1226)
.....+|+++.|.+..++.+.+.+.+ +..++.|...+ ...++||||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~-~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 34457899999999999999998876 55666665544 34557899999999999999999999999999999999998
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000914 997 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1074 (1226)
Q Consensus 997 s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p 1074 (1226)
..+.+.....++.+|..|+..+|+||||||||.+...+.. .+.+.....++++++..++++.. +..++||+|||++
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 8889999999999999999999999999999999876643 23344456788999999998864 3679999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000914 1075 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1152 (1226)
Q Consensus 1075 ~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~ 1152 (1226)
+.||++++| ||++.+.|++|+.++|.+||+.++.+..+..+.++..+|..|.||+|+||.++|++|+..++++
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~----- 375 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----- 375 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999999988888999999999999999999999999999887764
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccc
Q 000914 1153 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1196 (1226)
Q Consensus 1153 ~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~ 1196 (1226)
....++++||..|++++.+....
T Consensus 376 ---------------------~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 376 ---------------------NKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred ---------------------CCCcccHHHHHHHHHHHhccccc
Confidence 12458999999999888765443
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.9e-28 Score=299.76 Aligned_cols=452 Identities=20% Similarity=0.224 Sum_probs=316.2
Q ss_pred CCcccccccccccccchHHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEE
Q 000914 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1226)
Q Consensus 446 ~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~ 524 (1226)
+.+..|+||..... ++-++.|.+.+...|-+++++ +| +++ ..+++|++|||| ..++..|+|||-+.-
T Consensus 257 ~~~~~v~fd~vggl--~~~i~~LKEmVl~PLlyPE~f~~~--~it-pPrgvL~~GppG--TGkTl~araLa~~~s----- 324 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGL--ENYINQLKEMVLLPLLYPEFFDNF--NIT-PPRGVLFHGPPG--TGKTLMARALAAACS----- 324 (1080)
T ss_pred hhhcccCccccccH--HHHHHHHHHHHHhHhhhhhHhhhc--ccC-CCcceeecCCCC--CchhHHHHhhhhhhc-----
Confidence 34567899999988 999999999999999999986 33 233 346699999999 899999999996531
Q ss_pred EeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCe
Q 000914 525 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 604 (1226)
Q Consensus 525 ~D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 604 (1226)
+. . +|.+
T Consensus 325 ----------~~-~---------~kis----------------------------------------------------- 331 (1080)
T KOG0732|consen 325 ----------RG-N---------RKIS----------------------------------------------------- 331 (1080)
T ss_pred ----------cc-c---------cccc-----------------------------------------------------
Confidence 11 0 0110
Q ss_pred eeEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEE
Q 000914 605 VKFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVF 684 (1226)
Q Consensus 605 vk~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilf 684 (1226)
|| +.+...+.+.|..+....+.-||+.+.. ++|.|||
T Consensus 332 --------------------------------------ff--mrkgaD~lskwvgEaERqlrllFeeA~k---~qPSIIf 368 (1080)
T KOG0732|consen 332 --------------------------------------FF--MRKGADCLSKWVGEAERQLRLLFEEAQK---TQPSIIF 368 (1080)
T ss_pred --------------------------------------hh--hhcCchhhccccCcHHHHHHHHHHHHhc---cCceEEe
Confidence 11 2233446788999999999999999988 9999999
Q ss_pred EcChhhhhc-----cChhhHHHHHHHHhcC------CCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCC
Q 000914 685 VKDIEKSLT-----GNNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 753 (1226)
Q Consensus 685 i~die~~l~-----~~~~~~~~l~~~L~~l------~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd 753 (1226)
||+||. |. .+.+.|+.+.+.|..| .|+|||||++| +||
T Consensus 369 fdeIdG-lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn------------------------------Rpd 417 (1080)
T KOG0732|consen 369 FDEIDG-LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN------------------------------RPD 417 (1080)
T ss_pred cccccc-ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC------------------------------Ccc
Confidence 999998 44 5789999999999888 57999999999 666
Q ss_pred CccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCCCcccchhh
Q 000914 754 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESL 831 (1226)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l~~~dL~~L 831 (1226)
.+++ |++| ||.+.+++.+|+..+|..|+.|||+-|.+.+.-..+..|
T Consensus 418 a~dp-------------------------------aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~l 466 (1080)
T KOG0732|consen 418 AIDP-------------------------------ALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWL 466 (1080)
T ss_pred ccch-------------------------------hhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHH
Confidence 6775 7877 999999999999999999999999999999988889999
Q ss_pred hcccCCCCHHHHHHHHhhhhhcccccccCCCCC-CCcccccccchHhhHHHHHhhhhhhhhhhhhhcccc--ChhHHHHH
Q 000914 832 CIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVV--TENEFEKK 908 (1226)
Q Consensus 832 a~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id~~si~~~~~df~~a~~eik~~~~slk~lv--~~~e~~~~ 908 (1226)
|..|.||+||||++||++|+..++++.++++|. ..++.+++..+++...+|..+...+.+....-..+. +.....+.
T Consensus 467 a~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ 546 (1080)
T KOG0732|consen 467 AEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKP 546 (1080)
T ss_pred HHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceec
Confidence 999999999999999999999999999999998 788899999999999999888766554321100000 00000000
Q ss_pred hhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhh-hhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCc
Q 000914 909 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GAN 986 (1226)
Q Consensus 909 ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pel-f~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el-g~~ 986 (1226)
++ +-.........+.-+......+.+...+.++..+. |.-..+.+| .+||.|..|.|.+++..+|.+.+ +.+
T Consensus 547 ll----~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~~lg~aIlh~~~~~~ 620 (1080)
T KOG0732|consen 547 LL----PFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQDYLGPAILHRLEGLP 620 (1080)
T ss_pred cc----chHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccCcccHHHHHHHhccc
Confidence 00 00000000111111222222222222221111111 111122332 59999999999999999999988 788
Q ss_pred EEEEecCcccccc-ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcE
Q 000914 987 FINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1065 (1226)
Q Consensus 987 fi~v~~s~L~s~~-~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~V 1065 (1226)
+.....+.+.... ....+..+..+|..|++..||||||.++|.|...... .+...|...++.... ...|
T Consensus 621 v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~--------s~~~~~~~~l~~~~~--~t~i 690 (1080)
T KOG0732|consen 621 VQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPV--------SFLEEFLSSLDEKAL--STPI 690 (1080)
T ss_pred hHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcc--------hhhhcchhcchhhhh--ccch
Confidence 8888877777665 6777889999999999999999999999999643321 233444444332211 1122
Q ss_pred EEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 000914 1066 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1109 (1226)
Q Consensus 1066 lVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k 1109 (1226)
..+-+-+..+ ..-=..++.+..|..+.+..+++..+++
T Consensus 691 ~e~~t~~~~~------~~~~~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 691 LELHTWDTSF------ESVNKSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred hhhccccccc------cccCccccccccchhhhhHHHHHHHHHH
Confidence 2222211110 0000134566778888888777777665
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=8e-27 Score=298.90 Aligned_cols=188 Identities=20% Similarity=0.301 Sum_probs=155.3
Q ss_pred cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc--------------------------------
Q 000914 952 KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-------------------------------- 999 (1226)
Q Consensus 952 k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~-------------------------------- 999 (1226)
+.| ..|++||||+||||||||+||+|+|.++++||+.|+++++...+
T Consensus 1624 rLG-l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~ 1702 (2281)
T CHL00206 1624 RLA-LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELL 1702 (2281)
T ss_pred HcC-CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhh
Confidence 344 46789999999999999999999999999999999999887543
Q ss_pred ---------ccchHH--HHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcc-cCCCcEEE
Q 000914 1000 ---------FGEGEK--YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKERVLV 1067 (1226)
Q Consensus 1000 ---------~Ge~e~--~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~-k~~~~VlV 1067 (1226)
.+..+. .++.+|+.|++.+||||||||||.|...... ...+.+|+..|++... ....+|+|
T Consensus 1703 e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~-------~ltL~qLLneLDg~~~~~s~~~VIV 1775 (2281)
T CHL00206 1703 TMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN-------YLSLGLLVNSLSRDCERCSTRNILV 1775 (2281)
T ss_pred hhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc-------eehHHHHHHHhccccccCCCCCEEE
Confidence 111222 3888999999999999999999999644211 1236778888887642 23467999
Q ss_pred EEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhh--cccCC-hhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000914 1068 LAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAK--EELAS-DVDLEGIANMADGYSGSDLKNLCVTAAH 1142 (1226)
Q Consensus 1068 IaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k--~~l~~-dvdl~~LA~~TeGySgsDL~~L~~~Aa~ 1142 (1226)
|||||+|+.||+|++| ||++.|.|+.|+..+|.+++..++.. ..+.. .+++..+|..|.||+|+||.+||++|+.
T Consensus 1776 IAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1776 IASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred EEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999998876543 33333 3579999999999999999999999999
Q ss_pred hhhHH
Q 000914 1143 CPIRE 1147 (1226)
Q Consensus 1143 ~aire 1147 (1226)
.++++
T Consensus 1856 iAirq 1860 (2281)
T CHL00206 1856 ISITQ 1860 (2281)
T ss_pred HHHHc
Confidence 99887
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.9e-27 Score=268.04 Aligned_cols=264 Identities=27% Similarity=0.437 Sum_probs=217.4
Q ss_pred CCCccc--ccCcHHHHHH-HHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecCcc
Q 000914 920 GVTFDD--IGALENVKDT-LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSI 995 (1226)
Q Consensus 920 ~~tfdd--I~Gle~vk~~-L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~-~fi~v~~s~L 995 (1226)
.-.|++ |||++.--.. .+++...-+--|++..+.|+ +.-+|||||||||||||.+||.|.+-+++ +---++++++
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi-~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGI-KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCc-cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 345665 8999876544 46666666667888888885 45589999999999999999999999965 4455899999
Q ss_pred ccccccchHHHHHHHHHHHHhc--------CCeEEEEccccccccCCCCCch-HHHHHHHHHhhhhhccCCcccCCCcEE
Q 000914 996 TSKWFGEGEKYVKAVFSLASKI--------APSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVL 1066 (1226)
Q Consensus 996 ~s~~~Ge~e~~I~~lF~~A~k~--------~PsILfIDEID~L~~~r~~~~~-~e~l~~vl~~Ll~~ldgl~~k~~~~Vl 1066 (1226)
.++|+|++|.+++.+|..|..- .-.||++||||.++.+|++.++ ......++++|+..|||...- .+++
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEE
Confidence 9999999999999999998532 2359999999999998877544 557788999999999998654 5799
Q ss_pred EEEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhc----ccCChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 000914 1067 VLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTA 1140 (1226)
Q Consensus 1067 VIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~----~l~~dvdl~~LA~~TeGySgsDL~~L~~~A 1140 (1226)
||+-||+.+.+|++++| ||...+++.+||...|.+|++.+.+++ .+..++|+++||.+|..|+|++|..|++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 999999999999999999999998874 356899999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccccc
Q 000914 1141 AHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1197 (1226)
Q Consensus 1141 a~~aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e 1197 (1226)
...|+.|.+.-.... ...........++++||.+|+++++|.+-..
T Consensus 452 ~S~A~nR~vk~~~~~-----------~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~s 497 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKV-----------EVDPVAIENLKVTRGDFLNALEDVKPAFGIS 497 (744)
T ss_pred HHHHHHhhhccCcce-----------ecCchhhhheeecHHHHHHHHHhcCcccCCC
Confidence 999988865433110 0011123345799999999999999998543
No 39
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=7.4e-25 Score=248.86 Aligned_cols=188 Identities=20% Similarity=0.257 Sum_probs=154.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhc-----CCeEEEEcccccc
Q 000914 956 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSM 1030 (1226)
Q Consensus 956 ~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~-----~PsILfIDEID~L 1030 (1226)
.++|.+++||||||||||++|++||++++++|+.+++++|.++|.|++++.++.+|..|... +||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 46789999999999999999999999999999999999999999999999999999999754 6999999999999
Q ss_pred ccCCCCCchHHHHHHH-HHhhhhhccCCc----------ccCCCcEEEEEecCCCCCCcHHHHh--hccccccCCCCCHH
Q 000914 1031 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAP 1097 (1226)
Q Consensus 1031 ~~~r~~~~~~e~l~~v-l~~Ll~~ldgl~----------~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~e 1097 (1226)
++++... ......++ ..+|+..+|+.. .....+|.||+|||+++.|+++++| ||++.+ .+|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9887642 33333444 478888887632 1235679999999999999999999 999764 589999
Q ss_pred HHHHHHHHHHhhcccCChhcHHHHHHHcCC----CcHHHHHHHHHHHHhhhhHH
Q 000914 1098 NREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKNLCVTAAHCPIRE 1147 (1226)
Q Consensus 1098 eR~eILk~lL~k~~l~~dvdl~~LA~~TeG----ySgsDL~~L~~~Aa~~aire 1147 (1226)
+|.+||+.++++.++. ..++..|+..+.| |.|+--..+..++....+.+
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999998765 6888888888876 45554455555555444444
No 40
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.4e-25 Score=249.31 Aligned_cols=233 Identities=20% Similarity=0.311 Sum_probs=195.2
Q ss_pred HHHHHHHhccccCCCcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHH
Q 000914 433 QAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAK 512 (1226)
Q Consensus 433 ~~~~~~l~~~vv~~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaK 512 (1226)
.-|+.-+...||.+++|.|+|++.... |.+|+.|.+.+..+|+++++++++ .|...+++|||+|||| +.++||||
T Consensus 71 ne~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~g-~Ll~p~kGiLL~GPpG--~GKTmlAK 145 (386)
T KOG0737|consen 71 NEYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAKG-KLLRPPKGILLYGPPG--TGKTMLAK 145 (386)
T ss_pred hHHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhccc-ccccCCccceecCCCC--chHHHHHH
Confidence 457888899999999999999999999 999999999999999999998754 7888999999999999 99999999
Q ss_pred HHHhhhCCeEEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccc
Q 000914 513 ALAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTA 592 (1226)
Q Consensus 513 ALA~~f~a~lL~~D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1226)
|+|++-||.++.|+.+.+-+.+-.|+
T Consensus 146 A~Akeaga~fInv~~s~lt~KWfgE~------------------------------------------------------ 171 (386)
T KOG0737|consen 146 AIAKEAGANFINVSVSNLTSKWFGEA------------------------------------------------------ 171 (386)
T ss_pred HHHHHcCCCcceeeccccchhhHHHH------------------------------------------------------
Confidence 99999999999999877655333211
Q ss_pred ccCcccccCCCeeeEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHH
Q 000914 593 SSKNYTFKKGDRVKFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVA 672 (1226)
Q Consensus 593 ~~~~~~~~~gd~vk~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl 672 (1226)
.=++.++|.++
T Consensus 172 ---------------------------------------------------------------------eKlv~AvFslA 182 (386)
T KOG0737|consen 172 ---------------------------------------------------------------------QKLVKAVFSLA 182 (386)
T ss_pred ---------------------------------------------------------------------HHHHHHHHhhh
Confidence 12556667776
Q ss_pred hhccCCCCeEEEEcChhhhhccC----h----hhHHHHHHHHhcC----CCCEEEEEeccCCCCccccCCCCCceeeccC
Q 000914 673 LNESKSSPLIVFVKDIEKSLTGN----N----DAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFG 740 (1226)
Q Consensus 673 ~~es~~~P~Ilfi~die~~l~~~----~----~~~~~l~~~L~~l----~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~ 740 (1226)
. |.+|.|||||+||.+|..+ - .+.+.|+..++.| ..+|+|+|++|
T Consensus 183 s---Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN-------------------- 239 (386)
T KOG0737|consen 183 S---KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN-------------------- 239 (386)
T ss_pred h---hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC--------------------
Confidence 5 5999999999999999732 1 1233444556666 33799999999
Q ss_pred cchhhhhcccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHHhhh
Q 000914 741 SNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSR 820 (1226)
Q Consensus 741 ~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRrw~~qLe~dLpdlk~R~nIl~IhT~L~~ 820 (1226)
+|.++|+ |.+||+++++.+++|+...|..|+++ .|..
T Consensus 240 ----------RP~DlDe-------------------------------AiiRR~p~rf~V~lP~~~qR~kILkv--iLk~ 276 (386)
T KOG0737|consen 240 ----------RPFDLDE-------------------------------AIIRRLPRRFHVGLPDAEQRRKILKV--ILKK 276 (386)
T ss_pred ----------CCccHHH-------------------------------HHHHhCcceeeeCCCchhhHHHHHHH--Hhcc
Confidence 7767765 99999999999999999999999888 4777
Q ss_pred CCC-CcccchhhhcccCCCCHHHHHHHHhhhhhccccccc
Q 000914 821 NGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 859 (1226)
Q Consensus 821 n~l-~~~dL~~La~~tkg~sgadI~~Lv~~A~s~al~r~~ 859 (1226)
-.+ +++|+.++|..|+||||.||..+|+.|+.+.++...
T Consensus 277 e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~ 316 (386)
T KOG0737|consen 277 EKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELL 316 (386)
T ss_pred cccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHH
Confidence 777 889999999999999999999999999988776543
No 41
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.8e-24 Score=240.42 Aligned_cols=249 Identities=18% Similarity=0.240 Sum_probs=205.1
Q ss_pred CcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEe
Q 000914 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1226)
Q Consensus 447 ~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D 526 (1226)
++.+|.||+.-.. ++.|.+|.+|+..++..|+|++ .|....++|||.|||| .+++|||||+|.++|..|..|-
T Consensus 205 ~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~---GirrPWkgvLm~GPPG--TGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 205 RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFK---GIRRPWKGVLMVGPPG--TGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHh---hcccccceeeeeCCCC--CcHHHHHHHHHHhhcCeEEEec
Confidence 4677999999999 9999999999999999999876 5778999999999999 8999999999999999999998
Q ss_pred ccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeee
Q 000914 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1226)
Q Consensus 527 ~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk 606 (1226)
|+.|-..+..|+
T Consensus 278 sstltSKwRGeS-------------------------------------------------------------------- 289 (491)
T KOG0738|consen 278 SSTLTSKWRGES-------------------------------------------------------------------- 289 (491)
T ss_pred hhhhhhhhccch--------------------------------------------------------------------
Confidence 876654444322
Q ss_pred EecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEc
Q 000914 607 FVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVK 686 (1226)
Q Consensus 607 ~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi~ 686 (1226)
+-++..||+++.- ..|.+||||
T Consensus 290 -------------------------------------------------------EKlvRlLFemARf---yAPStIFiD 311 (491)
T KOG0738|consen 290 -------------------------------------------------------EKLVRLLFEMARF---YAPSTIFID 311 (491)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHH---hCCceeehh
Confidence 2367788999877 899999999
Q ss_pred Chhhhhc---------cChhhHHHHHHHHhcCCC---C---EEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccC
Q 000914 687 DIEKSLT---------GNNDAYGALKSKLENLPS---N---VVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAF 751 (1226)
Q Consensus 687 die~~l~---------~~~~~~~~l~~~L~~l~g---~---vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~ 751 (1226)
|||.+-. .+.++.+.|--.++.+.+ + |.|++++| +
T Consensus 312 EIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN------------------------------~ 361 (491)
T KOG0738|consen 312 EIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN------------------------------F 361 (491)
T ss_pred hHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC------------------------------C
Confidence 9999444 145666666666666643 4 89999999 9
Q ss_pred CCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCC-Ccccchh
Q 000914 752 PDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLES 830 (1226)
Q Consensus 752 pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRrw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l-~~~dL~~ 830 (1226)
||++|+ |++|||++.++++||+..+|..+++|- |+...+ ++++++.
T Consensus 362 PWdiDE-------------------------------AlrRRlEKRIyIPLP~~~~R~~Li~~~--l~~~~~~~~~~~~~ 408 (491)
T KOG0738|consen 362 PWDIDE-------------------------------ALRRRLEKRIYIPLPDAEARSALIKIL--LRSVELDDPVNLED 408 (491)
T ss_pred CcchHH-------------------------------HHHHHHhhheeeeCCCHHHHHHHHHHh--hccccCCCCccHHH
Confidence 999986 999999999999999999999999984 777666 8889999
Q ss_pred hhcccCCCCHHHHHHHHhhhhhcccccccCCCCCCCcccccccchH--hhHHHHHhhhhhhhh
Q 000914 831 LCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIM--YGLNILQGIQSESKS 891 (1226)
Q Consensus 831 La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~--~~~~df~~a~~eik~ 891 (1226)
|+..+.||+|+||.-+|+.|.-+++.|+..-....+...+..+.+. +...||+.++..+.+
T Consensus 409 lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 409 LAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 9999999999999999999999999987654433333444445554 677788877766554
No 42
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.7e-23 Score=244.28 Aligned_cols=249 Identities=22% Similarity=0.326 Sum_probs=198.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1039 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1039 (1226)
..+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+..+|..|++.+|+||||-++|.+...... +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 46999999999999999999999999999999999999989999999999999999999999999999998644333 32
Q ss_pred HHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccCChhcHH
Q 000914 1040 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 1119 (1226)
Q Consensus 1040 ~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~ 1119 (1226)
...+...++.++. .+.. .....+++||++|+..+.+++.+++.|.+.|.++.|+.++|.+||++++....+..++.++
T Consensus 511 d~rl~~~i~~~ls-~e~~-~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NEDF-KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-cccc-cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 2233344444443 1222 2234679999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccc
Q 000914 1120 GIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA-LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1198 (1226)
Q Consensus 1120 ~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ek~-~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e~ 1198 (1226)
.++..|.||+.+|+..++..+-..+..++.+.. .... ....++.+ -.....++++||.+|+.+++..++...
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~-l~g~~~~~~~~~~------~~~~~~l~~edf~kals~~~~~fs~ai 661 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKG-LAGGLQEEDEGEL------CAAGFLLTEEDFDKALSRLQKEFSDAI 661 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhc-ccccchhcccccc------ccccceecHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999998887433333322211 0000 00011111 112357999999999999999999888
Q ss_pred cchh-hhHHHHHHhcCCCccc
Q 000914 1199 TNMN-ELLQWNELYGEGGSRK 1218 (1226)
Q Consensus 1199 ~~~~-~~v~W~DigG~~~~Rk 1218 (1226)
.+.+ |+|.|+||||++.+|+
T Consensus 662 GAPKIPnV~WdDVGGLeevK~ 682 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKT 682 (953)
T ss_pred CCCCCCccchhcccCHHHHHH
Confidence 8766 9999999999998874
No 43
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.6e-23 Score=230.96 Aligned_cols=234 Identities=23% Similarity=0.273 Sum_probs=184.6
Q ss_pred CcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEe
Q 000914 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1226)
Q Consensus 447 ~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D 526 (1226)
+.-+|||++.... |....-|.+++-.+|+||+++. .-==...++|||+|||| +++++||||.|++-+|.|+=+=
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~--~~GI~PPKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrvv 217 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFE--ELGIDPPKGVLLYGPPG--TGKTLLAKAVANQTDATFIRVV 217 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHHHH--HcCCCCCCceEeeCCCC--CcHHHHHHHHHhccCceEEEec
Confidence 3457999999999 9999999999999999999963 21134568999999999 8999999999999999998764
Q ss_pred ccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeee
Q 000914 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1226)
Q Consensus 527 ~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk 606 (1226)
.|.|- + |
T Consensus 218 gSElV------------------------------------------------------q-------------------K 224 (406)
T COG1222 218 GSELV------------------------------------------------------Q-------------------K 224 (406)
T ss_pred cHHHH------------------------------------------------------H-------------------H
Confidence 32210 0 3
Q ss_pred EecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEc
Q 000914 607 FVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVK 686 (1226)
Q Consensus 607 ~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi~ 686 (1226)
|+|- .-.++.+||+++.+ +.|+|||||
T Consensus 225 YiGE--------------------------------------------------GaRlVRelF~lAre---kaPsIIFiD 251 (406)
T COG1222 225 YIGE--------------------------------------------------GARLVRELFELARE---KAPSIIFID 251 (406)
T ss_pred Hhcc--------------------------------------------------chHHHHHHHHHHhh---cCCeEEEEe
Confidence 4431 12389999999988 999999999
Q ss_pred Chhhhhc--------cCh---hhHHHHHHHHhcC--CCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCC
Q 000914 687 DIEKSLT--------GNN---DAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 753 (1226)
Q Consensus 687 die~~l~--------~~~---~~~~~l~~~L~~l--~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd 753 (1226)
+||.+=. +.. +.+-.|-+.|+.+ .++|-||+++| +||
T Consensus 252 EIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN------------------------------R~D 301 (406)
T COG1222 252 EIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN------------------------------RPD 301 (406)
T ss_pred chhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC------------------------------Ccc
Confidence 9999533 223 3333333444444 35999999999 555
Q ss_pred CccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHH-hhhCCCCcccchh
Q 000914 754 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLES 830 (1226)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~-L~~n~l~~~dL~~ 830 (1226)
-+|+ |+|| ||++.+|+++|+..+|..|++|||+ |.-. +++|++.
T Consensus 302 ~LDP-------------------------------ALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~--~dvd~e~ 348 (406)
T COG1222 302 ILDP-------------------------------ALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA--DDVDLEL 348 (406)
T ss_pred ccCh-------------------------------hhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc--cCcCHHH
Confidence 5554 9999 9999999999999999999999987 5422 6899999
Q ss_pred hhcccCCCCHHHHHHHHhhhhhcccccccCCCCCCCcccccccchHhhHHHHHhhhhhhh
Q 000914 831 LCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESK 890 (1226)
Q Consensus 831 La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik 890 (1226)
||..|.|++||||+++|++|--+|+.... ..+...||+.+..++.
T Consensus 349 la~~~~g~sGAdlkaictEAGm~AiR~~R---------------~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 349 LARLTEGFSGADLKAICTEAGMFAIRERR---------------DEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHhcCCCchHHHHHHHHHHhHHHHHhcc---------------CeecHHHHHHHHHHHH
Confidence 99999999999999999999999987322 2346788887766554
No 44
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.86 E-value=1e-19 Score=227.81 Aligned_cols=387 Identities=17% Similarity=0.231 Sum_probs=213.9
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc------cChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCceee
Q 000914 664 AINELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFT 737 (1226)
Q Consensus 664 ~~~~l~evl~~es~~~P~Ilfi~die~~l~------~~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~ 737 (1226)
-+..+++.+.. .++.||||||++.++. ++.++.+.|+..|. .|.+.|||++|..++
T Consensus 266 rl~~l~~~l~~---~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~------------- 327 (758)
T PRK11034 266 RFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEF------------- 327 (758)
T ss_pred HHHHHHHHHHh---cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHH-------------
Confidence 45556665543 6789999999999765 24677888888887 689999999994222
Q ss_pred ccCcchhhhhcccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHH--HhhhhhhhhcccchhHHH
Q 000914 738 KFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ--LERDVETLKGQSNIISIR 815 (1226)
Q Consensus 738 ~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRrw~~q--Le~dLpdlk~R~nIl~Ih 815 (1226)
. ...+.+.+|.++| .+|.|++|+.+..+..+... -+...+++......+.-.
T Consensus 328 ------------------~-------~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a 381 (758)
T PRK11034 328 ------------------S-------NIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAA 381 (758)
T ss_pred ------------------H-------HHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHH
Confidence 0 0112346788899 58999999988876544321 111112221111111110
Q ss_pred HHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhcccccccCCCCCCCcccccccchHhhHHHHHhhhhhhhhhhhh
Q 000914 816 SVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKS 895 (1226)
Q Consensus 816 T~L~~n~l~~~dL~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~s 895 (1226)
-.|... ......+.+..|+ ++.+|.+.. |..+...+ +..++...+. ........+...
T Consensus 382 ~~ls~r----------yi~~r~lPdKaid-lldea~a~~--~~~~~~~~--~~~v~~~~i~-------~v~~~~tgip~~ 439 (758)
T PRK11034 382 VELAVK----------YINDRHLPDKAID-VIDEAGARA--RLMPVSKR--KKTVNVADIE-------SVVARIARIPEK 439 (758)
T ss_pred HHHhhc----------cccCccChHHHHH-HHHHHHHhh--ccCccccc--ccccChhhHH-------HHHHHHhCCChh
Confidence 001111 1112222233333 334433221 11111111 1112222222 221111111000
Q ss_pred hccccChhHHHHH-hhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCCh
Q 000914 896 LKDVVTENEFEKK-LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTG 971 (1226)
Q Consensus 896 lk~lv~~~e~~~~-ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l---~kP~~gVLL~GPPGTG 971 (1226)
. +..++.+.. -+...+ -..|+|++++++.|.+.+.... .++ .+|...+||+||||||
T Consensus 440 --~-~~~~~~~~l~~l~~~L--------~~~ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvG 500 (758)
T PRK11034 440 --S-VSQSDRDTLKNLGDRL--------KMLVFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVG 500 (758)
T ss_pred --h-hhhhHHHHHHHHHHHh--------cceEeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCC
Confidence 0 111111000 000000 1258999999999999886421 122 3455579999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCcccc-----ccccchHHHH----HHHHHH-HHhcCCeEEEEccccccccCCCCCchHH
Q 000914 972 KTMLAKAVATEAGANFINISMSSITS-----KWFGEGEKYV----KAVFSL-ASKIAPSVVFVDEVDSMLGRRENPGEHE 1041 (1226)
Q Consensus 972 KT~LArAIA~elg~~fi~v~~s~L~s-----~~~Ge~e~~I----~~lF~~-A~k~~PsILfIDEID~L~~~r~~~~~~e 1041 (1226)
||++|+++|..++.+|+.++|+++.. .++|....++ ...+.. .++.+.+||||||||.+-
T Consensus 501 KT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~---------- 570 (758)
T PRK11034 501 KTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH---------- 570 (758)
T ss_pred HHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh----------
Confidence 99999999999999999999987532 2333221111 123333 345556999999999872
Q ss_pred HHHHHHHhhhhhccCCc-------ccCCCcEEEEEecCCC-------------------------CCCcHHHHhhccccc
Q 000914 1042 AMRKMKNEFMVNWDGLR-------TKDKERVLVLAATNRP-------------------------FDLDEAVVRRLPRRL 1089 (1226)
Q Consensus 1042 ~l~~vl~~Ll~~ldgl~-------~k~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRF~~~I 1089 (1226)
..+.+.|+..++.-. .-+-.+++||+|||.- ..+.|+|+.|++.++
T Consensus 571 --~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii 648 (758)
T PRK11034 571 --PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNII 648 (758)
T ss_pred --HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEE
Confidence 223444444443211 1112568899999831 135688999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhc-------ccC---ChhcHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHH
Q 000914 1090 MVNLPDAPNREKIIRVILAKE-------ELA---SDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIRE 1147 (1226)
Q Consensus 1090 ~l~lPd~eeR~eILk~lL~k~-------~l~---~dvdl~~LA~~Te--GySgsDL~~L~~~Aa~~aire 1147 (1226)
.|...+.++..+|+..++.+. ++. ++..++.|+.... .|-.+.|+.+++.-...++.+
T Consensus 649 ~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 649 WFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 999999999999998877642 111 3333455554331 334456666655555444443
No 45
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.86 E-value=1.2e-19 Score=228.74 Aligned_cols=383 Identities=20% Similarity=0.237 Sum_probs=216.9
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc------cChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCceee
Q 000914 664 AINELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFT 737 (1226)
Q Consensus 664 ~~~~l~evl~~es~~~P~Ilfi~die~~l~------~~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~ 737 (1226)
-+..+|+.+.. ..|.||||||++.++. ++.+..+.|+..|+ .|.+.|||++|..++
T Consensus 262 ~l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~------------- 323 (731)
T TIGR02639 262 RLKAVVSEIEK---EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEY------------- 323 (731)
T ss_pred HHHHHHHHHhc---cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHH-------------
Confidence 34445554433 5799999999999774 23567888998887 699999999993222
Q ss_pred ccCcchhhhhcccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHH
Q 000914 738 KFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSV 817 (1226)
Q Consensus 738 ~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRrw~~qLe~dLpdlk~R~nIl~IhT~ 817 (1226)
+...+.+.+|.++|. +|.|.+|+.+..+..+...... .+ ..|
T Consensus 324 -------------------------~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~-~e---------~~~-- 365 (731)
T TIGR02639 324 -------------------------KNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEK-YE---------EFH-- 365 (731)
T ss_pred -------------------------HHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHH-HH---------hcc--
Confidence 011233577889994 8999999988887665532221 00 000
Q ss_pred hhhCCCCcccchhhhcccCCC------CHHHHHHHHhhhhhcccccccCCCCCCCcccccccchHhhHHHHHhhhhhhhh
Q 000914 818 LSRNGLDCVDLESLCIKDQTL------TTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKS 891 (1226)
Q Consensus 818 L~~n~l~~~dL~~La~~tkg~------sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~ 891 (1226)
...+.+..|..++.....| ....|. |+..|....-.+... ..+. .+...++..+......
T Consensus 366 --~v~i~~~al~~~~~ls~ryi~~r~~P~kai~-lld~a~a~~~~~~~~----~~~~-------~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 366 --HVKYSDEALEAAVELSARYINDRFLPDKAID-VIDEAGASFRLRPKA----KKKA-------NVSVKDIENVVAKMAH 431 (731)
T ss_pred --CcccCHHHHHHHHHhhhcccccccCCHHHHH-HHHHhhhhhhcCccc----cccc-------ccCHHHHHHHHHHHhC
Confidence 0112333333333333333 222232 223332211111000 0111 1233333332222211
Q ss_pred hhhhhccccChhHHHHHh-hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcC
Q 000914 892 LKKSLKDVVTENEFEKKL-LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGP 967 (1226)
Q Consensus 892 ~~~slk~lv~~~e~~~~l-l~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l---~kP~~gVLL~GP 967 (1226)
... . .+..++..... +... --..++|++++++.+.+.+... +.++ .+|...+||+||
T Consensus 432 iP~--~-~~~~~~~~~l~~l~~~--------l~~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp 492 (731)
T TIGR02639 432 IPV--K-TVSVDDREKLKNLEKN--------LKAKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGP 492 (731)
T ss_pred CCh--h-hhhhHHHHHHHHHHHH--------HhcceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECC
Confidence 110 0 01111111000 0000 0125789999999998877631 1222 234445899999
Q ss_pred CCChHHHHHHHHHHHhCCcEEEEecCccccc-----cccchHH-----HHHHHHHHHHhcCCeEEEEccccccccCCCCC
Q 000914 968 PGTGKTMLAKAVATEAGANFINISMSSITSK-----WFGEGEK-----YVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1037 (1226)
Q Consensus 968 PGTGKT~LArAIA~elg~~fi~v~~s~L~s~-----~~Ge~e~-----~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~ 1037 (1226)
+|||||+||++||+.++.+++.++++++... .+|.... ....+....+..+.+||||||||.+ .+
T Consensus 493 ~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----~~ 567 (731)
T TIGR02639 493 TGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----HP 567 (731)
T ss_pred CCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----CH
Confidence 9999999999999999999999999875431 1221111 1122334445566689999999987 22
Q ss_pred chHHHHHHHHHhhhhhccCCc-------ccCCCcEEEEEecCCC-------------------------CCCcHHHHhhc
Q 000914 1038 GEHEAMRKMKNEFMVNWDGLR-------TKDKERVLVLAATNRP-------------------------FDLDEAVVRRL 1085 (1226)
Q Consensus 1038 ~~~e~l~~vl~~Ll~~ldgl~-------~k~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRF 1085 (1226)
. +.+.|+..++... .-+-.+++||+|||.. ..+.|.|+.||
T Consensus 568 ~-------~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Ri 640 (731)
T TIGR02639 568 D-------IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRL 640 (731)
T ss_pred H-------HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcC
Confidence 2 3333443333211 1112468899999763 12567888999
Q ss_pred cccccCCCCCHHHHHHHHHHHHhhcc---------cC-ChhcHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHH
Q 000914 1086 PRRLMVNLPDAPNREKIIRVILAKEE---------LA-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 1147 (1226)
Q Consensus 1086 ~~~I~l~lPd~eeR~eILk~lL~k~~---------l~-~dvdl~~LA~~T--eGySgsDL~~L~~~Aa~~aire 1147 (1226)
+.++.|...+.++..+|++..+.+.. +. ++..++.|+... ..|..+.|+.+++.-...++.+
T Consensus 641 d~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 641 DAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred CeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 99999999999999999999886421 11 344456666642 3455567777666655554443
No 46
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.8e-21 Score=230.74 Aligned_cols=261 Identities=21% Similarity=0.282 Sum_probs=205.4
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCcccccc
Q 000914 924 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKW 999 (1226)
Q Consensus 924 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~v~~s~L~s~~ 999 (1226)
.+++-...++++..+....|. .+ ..+|||+||+|+|||.|+++++.++ .+++..++|+.+....
T Consensus 408 ~d~i~~~s~kke~~n~~~spv-----------~~-~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~ 475 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPV-----------FR-HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS 475 (952)
T ss_pred Cceeecchhhhhhhhhhcccc-----------cc-cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh
Confidence 356666667766655433321 22 2479999999999999999999998 4677889999998888
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC-chHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000914 1000 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1078 (1226)
Q Consensus 1000 ~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~-~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1078 (1226)
+....+.+..+|..|.+++|+||+||++|.|++...+. +........+..+++.+-....+.+..+.|||+.+....++
T Consensus 476 ~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 476 LEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 88888899999999999999999999999999743332 22223333444444444333444567789999999999999
Q ss_pred HHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000914 1079 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1155 (1226)
Q Consensus 1079 ~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~e 1155 (1226)
+.+.+ +|+.++.++.|+..+|.+||+.++++.... ...|++.++..|+||...||..++++|.+.+..+.+..
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~---- 631 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN---- 631 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc----
Confidence 99888 899999999999999999999999986532 33455669999999999999999999999888543211
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccccccccchhhh-HHHHHHhcCCCccc
Q 000914 1156 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNEL-LQWNELYGEGGSRK 1218 (1226)
Q Consensus 1156 k~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~-v~W~DigG~~~~Rk 1218 (1226)
.. ..+|.+||.++++.+.|...+....-.+. ..|.||||+...|+
T Consensus 632 -----------------~~-klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 632 -----------------GP-KLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred -----------------Cc-ccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHH
Confidence 11 25899999999999999999998877755 99999999988774
No 47
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=4e-19 Score=201.08 Aligned_cols=237 Identities=16% Similarity=0.244 Sum_probs=171.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecCcc
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 995 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP--~~gVLL~GPPGTGKT~LArAIA~el-------g~~fi~v~~s~L 995 (1226)
+++|++++|+++.+++.+ +..++.+.+.++..+ ..++||+||||||||++|+++|+.+ ..+|+.+++.++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 799999999999998876 334455555555433 3459999999999999999999876 236899999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-
Q 000914 996 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1074 (1226)
Q Consensus 996 ~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p- 1074 (1226)
.+.++|..+..+..+|..|.. +||||||++.|...+.. ......+.+.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~ 172 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 998999887777888887654 89999999998643221 123345566666666542 2557888887642
Q ss_pred ----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHH----c--CCCc-HHHHHHHHHHHHh
Q 000914 1075 ----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANM----A--DGYS-GSDLKNLCVTAAH 1142 (1226)
Q Consensus 1075 ----~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~----T--eGyS-gsDL~~L~~~Aa~ 1142 (1226)
..+++++.+||+.+|.|+.++.+++.+|++.++.+.... .+.....+... . +.|. +++++++++.|..
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 245699999999999999999999999999999875432 22223333332 1 2344 7999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 000914 1143 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 1186 (1226)
Q Consensus 1143 ~aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~A 1186 (1226)
+...|++.... ...+.+++..++.+||...
T Consensus 253 ~~~~r~~~~~~--------------~~~~~~~l~~~~~~d~~~~ 282 (287)
T CHL00181 253 RQANRIFESGG--------------RVLTKADLVTIEAEDILKS 282 (287)
T ss_pred HHHHHHHcCCC--------------CCCCHHHHhCCCHHHHhHH
Confidence 87777644311 1123456778888888653
No 48
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=7.1e-19 Score=196.33 Aligned_cols=216 Identities=15% Similarity=0.221 Sum_probs=156.2
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecC
Q 000914 923 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMS 993 (1226)
Q Consensus 923 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~k--P~~gVLL~GPPGTGKT~LArAIA~el-------g~~fi~v~~s 993 (1226)
+++++|++++|+++++++.++....... +.++.. ...++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~-~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRK-EEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 5689999999999999887754432222 223322 23569999999999999999999875 3478899999
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC
Q 000914 994 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1073 (1226)
Q Consensus 994 ~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~ 1073 (1226)
++.+.++|+....++.+|..|. ++||||||+|.|..... .......++.++..++.. ...+++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDN----RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhcc----CCCEEEEecCCc
Confidence 9999999999888999998775 48999999999853111 112234556666666543 245666666543
Q ss_pred C-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc-------C--CCcHHHHHHHHH
Q 000914 1074 P-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-------D--GYSGSDLKNLCV 1138 (1226)
Q Consensus 1074 p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~T-------e--GySgsDL~~L~~ 1138 (1226)
. ..+++++.+||+..+.|+.++.+++.+|++.++...... ++..+..|+... . .-+++.+.++++
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 2 247789999998889999999999999999999876542 333445554321 1 235788999999
Q ss_pred HHHhhhhHHHHH
Q 000914 1139 TAAHCPIREILE 1150 (1226)
Q Consensus 1139 ~Aa~~aireli~ 1150 (1226)
.|..+...+++.
T Consensus 233 ~a~~~~~~r~~~ 244 (261)
T TIGR02881 233 KAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHhc
Confidence 988776666543
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=1.3e-18 Score=196.82 Aligned_cols=237 Identities=16% Similarity=0.216 Sum_probs=172.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecCcc
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 995 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~k--P~~gVLL~GPPGTGKT~LArAIA~elg-------~~fi~v~~s~L 995 (1226)
+++|++++|+++.+++.+ +..++.+.+.++.. |..++||+||||||||++|+++|+.+. .+|+.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998876 44555655555433 455899999999999999999988772 37999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-
Q 000914 996 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1074 (1226)
Q Consensus 996 ~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p- 1074 (1226)
.+.++|..+..++.+|..|.. +||||||++.|...+.. ......+.+.|+..++.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 888999888888888887754 89999999998643321 122334555666666532 2567888887542
Q ss_pred -C---CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc------C-CCcHHHHHHHHHHHHh
Q 000914 1075 -F---DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA------D-GYSGSDLKNLCVTAAH 1142 (1226)
Q Consensus 1075 -~---~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~T------e-GySgsDL~~L~~~Aa~ 1142 (1226)
+ .+++++.+||+..|.|+.++.+++..|++.++.+.... ++..+..++... + --++++++++++.|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 35899999999999999999999999999999985432 333344444431 1 1357999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 000914 1143 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 1186 (1226)
Q Consensus 1143 ~aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~A 1186 (1226)
+...++..... ......++..++.+|+..+
T Consensus 252 ~~~~r~~~~~~--------------~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLD--------------RVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcC--------------CCCCHHHHhCCCHHHHhhc
Confidence 77666543211 0112355677888888654
No 50
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.5e-19 Score=197.51 Aligned_cols=222 Identities=20% Similarity=0.297 Sum_probs=178.0
Q ss_pred HHHHHhccccCCCcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHH
Q 000914 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1226)
Q Consensus 435 ~~~~l~~~vv~~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKAL 514 (1226)
++..|...|| -|+-+|-|++.-.. |..|.+|.+|+..++|.|.++... ....++|||+|||| .++-.||||.
T Consensus 115 Lr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFtGk---R~PwrgiLLyGPPG--TGKSYLAKAV 186 (439)
T KOG0739|consen 115 LRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFTGK---RKPWRGILLYGPPG--TGKSYLAKAV 186 (439)
T ss_pred HHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhhcCC---CCcceeEEEeCCCC--CcHHHHHHHH
Confidence 4444555555 46789999999999 999999999999999999986433 34678999999999 8999999999
Q ss_pred HhhhCCeEEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccc
Q 000914 515 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 594 (1226)
Q Consensus 515 A~~f~a~lL~~D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (1226)
|.+-+..+.-|.|++|-..|-
T Consensus 187 ATEAnSTFFSvSSSDLvSKWm----------------------------------------------------------- 207 (439)
T KOG0739|consen 187 ATEANSTFFSVSSSDLVSKWM----------------------------------------------------------- 207 (439)
T ss_pred HhhcCCceEEeehHHHHHHHh-----------------------------------------------------------
Confidence 999998888887766643322
Q ss_pred CcccccCCCeeeEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhh
Q 000914 595 KNYTFKKGDRVKFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALN 674 (1226)
Q Consensus 595 ~~~~~~~gd~vk~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~ 674 (1226)
...+-++..|||++.+
T Consensus 208 ----------------------------------------------------------------GESEkLVknLFemARe 223 (439)
T KOG0739|consen 208 ----------------------------------------------------------------GESEKLVKNLFEMARE 223 (439)
T ss_pred ----------------------------------------------------------------ccHHHHHHHHHHHHHh
Confidence 2223478889999988
Q ss_pred ccCCCCeEEEEcChhhhhccC-----hhhHHHHHHH----HhcC---CCCEEEEEeccCCCCccccCCCCCceeeccCcc
Q 000914 675 ESKSSPLIVFVKDIEKSLTGN-----NDAYGALKSK----LENL---PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSN 742 (1226)
Q Consensus 675 es~~~P~Ilfi~die~~l~~~-----~~~~~~l~~~----L~~l---~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~ 742 (1226)
..|.|||||+||. ||++ .+.-..++.. +... ...|+|+|++|
T Consensus 224 ---~kPSIIFiDEiDs-lcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN---------------------- 277 (439)
T KOG0739|consen 224 ---NKPSIIFIDEIDS-LCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN---------------------- 277 (439)
T ss_pred ---cCCcEEEeehhhh-hccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC----------------------
Confidence 9999999999995 7731 2333333333 3322 34999999999
Q ss_pred hhhhhcccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCC
Q 000914 743 QTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNG 822 (1226)
Q Consensus 743 ~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRrw~~qLe~dLpdlk~R~nIl~IhT~L~~n~ 822 (1226)
.||.+|. |++|||++.++++||...+|..+.+||---.-|.
T Consensus 278 --------iPw~LDs-------------------------------AIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~ 318 (439)
T KOG0739|consen 278 --------IPWVLDS-------------------------------AIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHV 318 (439)
T ss_pred --------CchhHHH-------------------------------HHHHHhhcceeccCCcHHHhhhhheeccCCCccc
Confidence 7888875 8999999999999999999999999993345567
Q ss_pred CCcccchhhhcccCCCCHHHHHHHHhhhhh
Q 000914 823 LDCVDLESLCIKDQTLTTEGVEKIVGWALS 852 (1226)
Q Consensus 823 l~~~dL~~La~~tkg~sgadI~~Lv~~A~s 852 (1226)
|...|+.+|+.+|.||+|+||.-+|+.|.-
T Consensus 319 LT~~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 319 LTEQDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred cchhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 889999999999999999999988887653
No 51
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.4e-18 Score=192.17 Aligned_cols=197 Identities=28% Similarity=0.388 Sum_probs=158.1
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------
Q 000914 911 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------- 983 (1226)
Q Consensus 911 ~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el------- 983 (1226)
.+++|..+-.--|+.++--..+|+.|..++...+...+.-....+..-.+-|||+||||||||+|++|+|+.+
T Consensus 129 ~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 129 HWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred heeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 4556665555668888888899999999987766655443333333333458999999999999999999998
Q ss_pred --CCcEEEEecCccccccccchHHHHHHHHHHHHhcC---C--eEEEEccccccccCCCC---CchHHHHHHHHHhhhhh
Q 000914 984 --GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA---P--SVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVN 1053 (1226)
Q Consensus 984 --g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~---P--sILfIDEID~L~~~r~~---~~~~e~l~~vl~~Ll~~ 1053 (1226)
...++++++..++++||+++.+.+..+|......- . -.++|||++.|...|.+ ..+....-++++.++.+
T Consensus 209 y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 209 YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ 288 (423)
T ss_pred cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence 34679999999999999999999999998775432 2 36678999999866522 22333345789999999
Q ss_pred ccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 000914 1054 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1109 (1226)
Q Consensus 1054 ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k 1109 (1226)
+|.+... .+|++++|+|-.+.+|.+|..|-+-+.++..|+...|.+|++..+.+
T Consensus 289 lDrlK~~--~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 289 LDRLKRY--PNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HHHhccC--CCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 9998654 67999999999999999999999999999999999999999998876
No 52
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.3e-18 Score=190.81 Aligned_cols=207 Identities=26% Similarity=0.446 Sum_probs=162.7
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccccc
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1001 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G 1001 (1226)
.|++++-.......|+.+...--. .+ ....|-++||+|||||||||++|+.||.+.|..+-.+.+.++... -.
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaN-----TK-~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~ 425 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATAN-----TK-KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GA 425 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcc-----cc-cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-ch
Confidence 466777777777777776542111 11 113356789999999999999999999999999988888776432 22
Q ss_pred chHHHHHHHHHHHHhcCCe-EEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHH
Q 000914 1002 EGEKYVKAVFSLASKIAPS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 1080 (1226)
Q Consensus 1002 e~e~~I~~lF~~A~k~~Ps-ILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~a 1080 (1226)
+.-..|..+|.-|++...+ +|||||.|.++..|......+..+..++.|+..-.. ....++++.+||+|.+||.+
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhHH
Confidence 3456789999999987765 789999999998888777888888999998865322 23568889999999999999
Q ss_pred HHhhccccccCCCCCHHHHHHHHHHHHhhccc---------------------------CChhcHHHHHHHcCCCcHHHH
Q 000914 1081 VVRRLPRRLMVNLPDAPNREKIIRVILAKEEL---------------------------ASDVDLEGIANMADGYSGSDL 1133 (1226)
Q Consensus 1081 LlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l---------------------------~~dvdl~~LA~~TeGySgsDL 1133 (1226)
+-.||+.+++|++|..++|.+||..|+.++-+ ..+..+.+.|..|+||+|++|
T Consensus 502 V~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREi 581 (630)
T KOG0742|consen 502 VNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREI 581 (630)
T ss_pred HHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHH
Confidence 99999999999999999999999999876321 112236788999999999999
Q ss_pred HHHHHH
Q 000914 1134 KNLCVT 1139 (1226)
Q Consensus 1134 ~~L~~~ 1139 (1226)
..|+.-
T Consensus 582 akLva~ 587 (630)
T KOG0742|consen 582 AKLVAS 587 (630)
T ss_pred HHHHHH
Confidence 988653
No 53
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.77 E-value=1.8e-16 Score=202.10 Aligned_cols=207 Identities=22% Similarity=0.278 Sum_probs=130.2
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 000914 924 DDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 997 (1226)
Q Consensus 924 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~---kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s 997 (1226)
..++|++...+.+.+.+... +.++. +|...+||+||+|+|||++|+++|..+ ...++.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 35899999999998887642 12222 232348999999999999999999998 45789999877532
Q ss_pred c------------cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCC-cccCCCc
Q 000914 998 K------------WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKER 1064 (1226)
Q Consensus 998 ~------------~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl-~~k~~~~ 1064 (1226)
. |+|..+. ..+....++.+.+||+|||||.. .+.....+..+++..... ++. ..-+-.+
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----~~~v~~~Llq~ld~g~l~-d~~Gr~vd~~n 709 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----HPDVLELFYQVFDKGVME-DGEGREIDFKN 709 (852)
T ss_pred hhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----CHHHHHHHHHHhhcceee-cCCCcEEeccc
Confidence 1 2332221 11233445667799999999876 222222222222221100 100 0011256
Q ss_pred EEEEEecCCCC-----------------------------CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhc-----
Q 000914 1065 VLVLAATNRPF-----------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----- 1110 (1226)
Q Consensus 1065 VlVIaTTN~p~-----------------------------~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~----- 1110 (1226)
.+||+|||... .+.|+|+.|++ +|.|...+.++..+|+...+...
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~ 788 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLK 788 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999988411 24577888996 88999999999999998877542
Q ss_pred ---cc---CChhcHHHHHHHcCC--CcHHHHHHHHHHHHhhhhHH
Q 000914 1111 ---EL---ASDVDLEGIANMADG--YSGSDLKNLCVTAAHCPIRE 1147 (1226)
Q Consensus 1111 ---~l---~~dvdl~~LA~~TeG--ySgsDL~~L~~~Aa~~aire 1147 (1226)
++ .++..++.|+....+ |-.+.|..+++.-...++.+
T Consensus 789 ~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 789 ENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 21 134446667776643 45677777777666555554
No 54
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=3.6e-18 Score=168.44 Aligned_cols=130 Identities=38% Similarity=0.644 Sum_probs=114.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCchH
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEH 1040 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~ 1040 (1226)
|||+||||||||++|+.+|++++.+++.+++..+.+.+.+..+..+..+|..+.... |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998888999999999999999888 9999999999998776 33345
Q ss_pred HHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHH-hhccccccCCC
Q 000914 1041 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV-RRLPRRLMVNL 1093 (1226)
Q Consensus 1041 e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLl-rRF~~~I~l~l 1093 (1226)
.....+++.++..++..... ..+++||+|||.++.+++.++ +||+.++++++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55667788888888876543 367999999999999999999 99998888763
No 55
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.76 E-value=2.6e-16 Score=200.99 Aligned_cols=204 Identities=21% Similarity=0.254 Sum_probs=130.3
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 000914 924 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 997 (1226)
Q Consensus 924 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l---~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s 997 (1226)
..++|++++++.+...+... +.++ .+|...+||+||+|+|||+||+++|+.+ +.+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 45899999999998887631 1121 3344458999999999999999999998 46899999887532
Q ss_pred c-----cccchHHH-----HHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCc-------cc
Q 000914 998 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1060 (1226)
Q Consensus 998 ~-----~~Ge~e~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~-------~k 1060 (1226)
. .+|....+ ...+....++.+.+||+|||||.+ .+ .+.+.|+..++.-. .-
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----~~-------~v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----HP-------DIFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----CH-------HHHHHHHHHhccCceecCCCcEE
Confidence 1 12211111 123444555555689999999987 22 23344444444211 11
Q ss_pred CCCcEEEEEecCCCC-------------------------------------CCcHHHHhhccccccCCCCCHHHHHHHH
Q 000914 1061 DKERVLVLAATNRPF-------------------------------------DLDEAVVRRLPRRLMVNLPDAPNREKII 1103 (1226)
Q Consensus 1061 ~~~~VlVIaTTN~p~-------------------------------------~Ld~aLlrRF~~~I~l~lPd~eeR~eIL 1103 (1226)
+-.+.+||+|||... .+.|.|+.|++.++.|...+.++..+|+
T Consensus 649 ~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 649 DFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred ecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHH
Confidence 235789999987421 0235778899999999999999999999
Q ss_pred HHHHhhc-------c--cC-ChhcHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHH
Q 000914 1104 RVILAKE-------E--LA-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 1147 (1226)
Q Consensus 1104 k~lL~k~-------~--l~-~dvdl~~LA~~T--eGySgsDL~~L~~~Aa~~aire 1147 (1226)
+..+.+. + +. ++...+.|+... ..|-.+.|+.+++.-...++.+
T Consensus 729 ~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 729 EIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 8887652 1 11 333455666642 2344566666666555444443
No 56
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.75 E-value=5.4e-16 Score=198.71 Aligned_cols=211 Identities=21% Similarity=0.325 Sum_probs=133.0
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 000914 924 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 997 (1226)
Q Consensus 924 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l---~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s 997 (1226)
..++|++.+++.+.+.+... +.++ .+|...+||+||+|||||++|++||..+ +.+++.++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 45899999999998887631 1122 2355569999999999999999999987 56899999987543
Q ss_pred c-----cccchHHH-----HHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCC-cccCCCcEE
Q 000914 998 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVL 1066 (1226)
Q Consensus 998 ~-----~~Ge~e~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl-~~k~~~~Vl 1066 (1226)
. .+|....+ ...+....++.+-+||||||||.+ .+..+..+.+++++-... ++. ..-+-.+.+
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----~~~v~~~Ll~~l~~g~l~-d~~g~~vd~rn~i 710 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----HPDVFNVLLQVLDDGRLT-DGQGRTVDFRNTV 710 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----CHHHHHHHHHHHhcCcee-cCCCeEEecCCcE
Confidence 2 11111100 112333334455579999999977 222222222222221111 110 001124678
Q ss_pred EEEecCCCC-------------------------CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhc-------cc--
Q 000914 1067 VLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------EL-- 1112 (1226)
Q Consensus 1067 VIaTTN~p~-------------------------~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~-------~l-- 1112 (1226)
||+|||... .+.+.|+.|++.++.|.+++.++..+|+...+... ++
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l 790 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITL 790 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 999998721 13467777999999999999999999998877631 11
Q ss_pred -CChhcHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHH
Q 000914 1113 -ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREI 1148 (1226)
Q Consensus 1113 -~~dvdl~~LA~~Te--GySgsDL~~L~~~Aa~~airel 1148 (1226)
.++..++.|+...- .+..+.|+++++.....++.+.
T Consensus 791 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~ 829 (852)
T TIGR03346 791 ELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKK 829 (852)
T ss_pred cCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 13444566666532 4566888888887776666553
No 57
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.74 E-value=1e-15 Score=195.67 Aligned_cols=172 Identities=21% Similarity=0.352 Sum_probs=109.6
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 000914 924 DDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 997 (1226)
Q Consensus 924 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~---kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s 997 (1226)
..++|++.+++.+.+.+... +.++. +|...+||+||+|||||++|++||..+ +.+++.++|+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 46889999999988887631 11222 233468999999999999999999987 46799999987543
Q ss_pred c-----cccchHHH----HHHHHHHH-HhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCC-cccCCCcEE
Q 000914 998 K-----WFGEGEKY----VKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVL 1066 (1226)
Q Consensus 998 ~-----~~Ge~e~~----I~~lF~~A-~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl-~~k~~~~Vl 1066 (1226)
. .+|....+ -...+..+ +..+.+|||||||+.+ .+..+..+..+++..... ++. ...+-.+.+
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----~~~v~~~Ll~ile~g~l~-d~~gr~vd~rn~i 713 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----HPDVFNILLQVLDDGRLT-DGQGRTVDFRNTV 713 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----CHHHHHHHHHHHhhCcee-cCCceEEeecccE
Confidence 2 12211100 01223334 3334489999999977 222222222222221100 110 001124567
Q ss_pred EEEecCCC-------------------------CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 000914 1067 VLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1109 (1226)
Q Consensus 1067 VIaTTN~p-------------------------~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k 1109 (1226)
||+|||.. ..+.++|+.|++.++.+.+++.++..+|++.++.+
T Consensus 714 iI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 714 VIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 89999862 13457889999999999999999999999888865
No 58
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.5e-17 Score=196.63 Aligned_cols=249 Identities=37% Similarity=0.540 Sum_probs=216.6
Q ss_pred cccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeE
Q 000914 942 LPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSV 1021 (1226)
Q Consensus 942 ~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsI 1021 (1226)
+|+..++.|...+ ..++.+++++||||+|||.++++++.+ +..+..++.+...+++.+..+...+.+|..+....|++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 79 (494)
T COG0464 2 LPLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSI 79 (494)
T ss_pred CCccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCe
Confidence 3566777777766 456699999999999999999999999 77778888999999999999999999999999999999
Q ss_pred EEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHH
Q 000914 1022 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNR 1099 (1226)
Q Consensus 1022 LfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR 1099 (1226)
+++||+|.+.+.+.. ........+..+++..++++. ... +++++.+|++..+++++++ ||+..+.+..|+...|
T Consensus 80 i~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (494)
T COG0464 80 IFIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGR 155 (494)
T ss_pred EeechhhhcccCccc-cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHH
Confidence 999999999988766 555677889999999999988 445 9999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCcccccccc
Q 000914 1100 EKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLK 1179 (1226)
Q Consensus 1100 ~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt 1179 (1226)
.+|+...........+.++..++..+.||.++++..+|..+...++++.+ ........++
T Consensus 156 ~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------------------~~~~~~~~~~ 215 (494)
T COG0464 156 LEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------------------DLVGEYIGVT 215 (494)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------------------ccCccccccc
Confidence 99999998887777788999999999999999999999999988887743 0011234689
Q ss_pred HHHHHHHHHHhcccccccccchhhhHHHHHHhcCCCccc
Q 000914 1180 MDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1218 (1226)
Q Consensus 1180 ~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG~~~~Rk 1218 (1226)
.+||.++++++.++ .+.....+.+.|.|++|++..|.
T Consensus 216 ~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~ 252 (494)
T COG0464 216 EDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKE 252 (494)
T ss_pred HHHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHH
Confidence 99999999999998 66677789999999999887764
No 59
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.8e-18 Score=194.67 Aligned_cols=221 Identities=22% Similarity=0.365 Sum_probs=174.2
Q ss_pred HhccccCCCcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhh
Q 000914 439 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 518 (1226)
Q Consensus 439 l~~~vv~~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f 518 (1226)
|...|.+-+.++|+|++.=.- |+.|+-|.+-+- .||.|. ||++-=--..++|||.|||| .+++|||||.|-+-
T Consensus 289 l~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPG--TGKTlLARAvAGEA 361 (752)
T KOG0734|consen 289 LDSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPG--TGKTLLARAVAGEA 361 (752)
T ss_pred cccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCC--CchhHHHHHhhccc
Confidence 447788888889999999999 999999999886 788765 46654466789999999999 89999999999999
Q ss_pred CCeEEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCccc
Q 000914 519 SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYT 598 (1226)
Q Consensus 519 ~a~lL~~D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1226)
|+++.--- | . |+. .
T Consensus 362 ~VPFF~~s-----G---S--EFd-------E------------------------------------------------- 375 (752)
T KOG0734|consen 362 GVPFFYAS-----G---S--EFD-------E------------------------------------------------- 375 (752)
T ss_pred CCCeEecc-----c---c--chh-------h-------------------------------------------------
Confidence 99875321 1 1 110 0
Q ss_pred ccCCCeeeEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCC
Q 000914 599 FKKGDRVKFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKS 678 (1226)
Q Consensus 599 ~~~gd~vk~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~ 678 (1226)
-||| +| -.-+..||.-+.. .
T Consensus 376 -------m~VG---------vG-----------------------------------------ArRVRdLF~aAk~---~ 395 (752)
T KOG0734|consen 376 -------MFVG---------VG-----------------------------------------ARRVRDLFAAAKA---R 395 (752)
T ss_pred -------hhhc---------cc-----------------------------------------HHHHHHHHHHHHh---c
Confidence 1122 11 1146678888877 8
Q ss_pred CCeEEEEcChhhhhcc--C-h------hhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhh
Q 000914 679 SPLIVFVKDIEKSLTG--N-N------DAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALL 747 (1226)
Q Consensus 679 ~P~Ilfi~die~~l~~--~-~------~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~ 747 (1226)
.|+||||||+|. +++ + . +..+.+-..|+.+. .+|||||++|
T Consensus 396 APcIIFIDEiDa-vG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN--------------------------- 447 (752)
T KOG0734|consen 396 APCIIFIDEIDA-VGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN--------------------------- 447 (752)
T ss_pred CCeEEEEechhh-hcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC---------------------------
Confidence 999999999999 552 2 2 22233333344442 3999999999
Q ss_pred cccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCC-C
Q 000914 748 DLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-D 824 (1226)
Q Consensus 748 d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l-~ 824 (1226)
|||++|. ||+| ||++++-.++||+.||.+|++.| |....+ .
T Consensus 448 ---fpe~LD~-------------------------------AL~RPGRFD~~v~Vp~PDv~GR~eIL~~y--l~ki~~~~ 491 (752)
T KOG0734|consen 448 ---FPEALDK-------------------------------ALTRPGRFDRHVTVPLPDVRGRTEILKLY--LSKIPLDE 491 (752)
T ss_pred ---ChhhhhH-------------------------------HhcCCCccceeEecCCCCcccHHHHHHHH--HhcCCccc
Confidence 8888886 9998 99999999999999999999998 777777 6
Q ss_pred cccchhhhcccCCCCHHHHHHHHhhhhhcccc
Q 000914 825 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 856 (1226)
Q Consensus 825 ~~dL~~La~~tkg~sgadI~~Lv~~A~s~al~ 856 (1226)
++|+.-||.-|.||+||||+-+|+.|+.+|-.
T Consensus 492 ~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 492 DVDPKIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred CCCHhHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999865
No 60
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.4e-15 Score=187.73 Aligned_cols=163 Identities=22% Similarity=0.327 Sum_probs=121.5
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCcccc
Q 000914 924 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS 997 (1226)
Q Consensus 924 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l---~kP~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~v~~s~L~s 997 (1226)
..++|++++...+.+.+.. .+.|+ .+|...+||.||+|+|||-||+++|..+. -.++.++|++++.
T Consensus 491 ~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 3589999999999888874 23333 34555689999999999999999999995 7899999998653
Q ss_pred c------------cccchHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccC---
Q 000914 998 K------------WFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--- 1061 (1226)
Q Consensus 998 ~------------~~Ge~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~--- 1061 (1226)
+ |+|..+ .+.+..|-+.. .+||+||||+.- ...+++.|+..+|.-.-.+
T Consensus 563 kHsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCC
Confidence 3 333332 24555555555 589999999864 3467777777776433221
Q ss_pred ----CCcEEEEEecCCC----------------------------CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 000914 1062 ----KERVLVLAATNRP----------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1109 (1226)
Q Consensus 1062 ----~~~VlVIaTTN~p----------------------------~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k 1109 (1226)
=.+.+||+|+|-- ..+.|+|+.|++.+|.|...+.+...+|+...+.+
T Consensus 628 r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 628 RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 2468999999741 12446888899999999999999999999988875
No 61
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.69 E-value=9.4e-17 Score=192.98 Aligned_cols=219 Identities=21% Similarity=0.261 Sum_probs=157.8
Q ss_pred cccCCCcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCe
Q 000914 442 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1226)
Q Consensus 442 ~vv~~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~ 521 (1226)
++++-...+++|++...+ ++.|..|....-.+.. ....|+ + +..++|||+|||| +++++||||+|++++++
T Consensus 216 ~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpG--TGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 216 EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQG--TGKSLTAKAIANDWQLP 286 (489)
T ss_pred ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCC--CcHHHHHHHHHHHhCCC
Confidence 466666778999999998 9999988864322211 122343 3 4568999999999 99999999999999999
Q ss_pred EEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccC
Q 000914 522 LLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKK 601 (1226)
Q Consensus 522 lL~~D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (1226)
|+.+|.+.+++++-.++
T Consensus 287 ~~~l~~~~l~~~~vGes--------------------------------------------------------------- 303 (489)
T CHL00195 287 LLRLDVGKLFGGIVGES--------------------------------------------------------------- 303 (489)
T ss_pred EEEEEhHHhcccccChH---------------------------------------------------------------
Confidence 99999877666433211
Q ss_pred CCeeeEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCe
Q 000914 602 GDRVKFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPL 681 (1226)
Q Consensus 602 gd~vk~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~ 681 (1226)
...+..+|+.+.. .+|+
T Consensus 304 ------------------------------------------------------------e~~l~~~f~~A~~---~~P~ 320 (489)
T CHL00195 304 ------------------------------------------------------------ESRMRQMIRIAEA---LSPC 320 (489)
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHh---cCCc
Confidence 1134556666655 7899
Q ss_pred EEEEcChhhhhccC---------hhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCC
Q 000914 682 IVFVKDIEKSLTGN---------NDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 752 (1226)
Q Consensus 682 Ilfi~die~~l~~~---------~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~p 752 (1226)
||||||||+++.+. .+....|-..|+....+|+|||++|+ |
T Consensus 321 IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~------------------------------~ 370 (489)
T CHL00195 321 ILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANN------------------------------I 370 (489)
T ss_pred EEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCC------------------------------h
Confidence 99999999987631 23334444445555679999999994 3
Q ss_pred CCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHH-hhhCCCCcccch
Q 000914 753 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLE 829 (1226)
Q Consensus 753 d~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~-L~~n~l~~~dL~ 829 (1226)
+.++. +++| ||++.+++++|+...|..|+++|-. .......+.+++
T Consensus 371 ~~Ld~-------------------------------allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~ 419 (489)
T CHL00195 371 DLLPL-------------------------------EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIK 419 (489)
T ss_pred hhCCH-------------------------------HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHH
Confidence 33442 5555 6666677777777777777777743 222234578899
Q ss_pred hhhcccCCCCHHHHHHHHhhhhhcccc
Q 000914 830 SLCIKDQTLTTEGVEKIVGWALSHHFM 856 (1226)
Q Consensus 830 ~La~~tkg~sgadI~~Lv~~A~s~al~ 856 (1226)
.||..|.||+|+||+.+|..|...|+.
T Consensus 420 ~La~~T~GfSGAdI~~lv~eA~~~A~~ 446 (489)
T CHL00195 420 KLSKLSNKFSGAEIEQSIIEAMYIAFY 446 (489)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988864
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.67 E-value=4.1e-16 Score=168.48 Aligned_cols=198 Identities=22% Similarity=0.291 Sum_probs=128.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 999 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 999 (1226)
..+|+|++|+++++..+.-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++++.+..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 358999999999999987776532221 224468999999999999999999999999999888765321
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhh-hccCCccc------CCCcEEEEEecC
Q 000914 1000 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTK------DKERVLVLAATN 1072 (1226)
Q Consensus 1000 ~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~-~ldgl~~k------~~~~VlVIaTTN 1072 (1226)
...+..++.... ...||||||||+| +...++.+...++.+.. .+-|.... +-.++.+|+||+
T Consensus 89 ----~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATT 157 (233)
T PF05496_consen 89 ----AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATT 157 (233)
T ss_dssp ----CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEES
T ss_pred ----HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeec
Confidence 123334443332 3579999999998 54556666666665543 22222111 124689999999
Q ss_pred CCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 000914 1073 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1140 (1226)
Q Consensus 1073 ~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~A 1140 (1226)
+...|...++.||..+..+...+.++..+|++.-....++. ++....+||..+.| +++-..+|++++
T Consensus 158 r~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 158 RAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp SGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred cccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 99999999999999888999999999999998876665544 45567889999987 455555555544
No 63
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.67 E-value=8.2e-16 Score=194.36 Aligned_cols=185 Identities=24% Similarity=0.377 Sum_probs=141.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 990 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v 990 (1226)
..+++++|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3577899999998887776642 123589999999999999999999987 7789999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch-HHHHHHHHHhhhhhccCCcccCCCcEEE
Q 000914 991 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 1067 (1226)
Q Consensus 991 ~~s~L~--s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~e~l~~vl~~Ll~~ldgl~~k~~~~VlV 1067 (1226)
++..+. ..+.|+.+..++.+|..+.+..+.||||||||.|++.....+. .... .++ ...+ .++.+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~-~~L---~~~l------~~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS-NLL---KPAL------SSGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH-HHH---HHHH------hCCCeEE
Confidence 988876 4688999999999999998888999999999999865432222 2222 122 2222 2367999
Q ss_pred EEecCCC-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhc----cc-CChhcHHHHHHHcCCCcH
Q 000914 1068 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1068 IaTTN~p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~----~l-~~dvdl~~LA~~TeGySg 1130 (1226)
|++|+.. ...|+++.|||. .|.|+.|+.+++.+||+.+.... .+ ..+..+..++..+..|-+
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 9999863 468999999995 79999999999999999877652 11 255667777777766643
No 64
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-15 Score=177.39 Aligned_cols=220 Identities=16% Similarity=0.289 Sum_probs=168.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 999 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 999 (1226)
..+|+.++.-.+.|+.|.+-+..++...+.|.+.|.... +|.|||||||||||+++.|+|+++++.++.++.+++...
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK-RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK-RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh-ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-
Confidence 368999999999999999999999999999998875443 889999999999999999999999999999998765432
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch-----HH-HHHHHHHhhhhhccCCcccCCCcEEEEEecCC
Q 000914 1000 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-----HE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1073 (1226)
Q Consensus 1000 ~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-----~e-~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~ 1073 (1226)
. .++.++..+. ..+||+|.+||.-+.-+..... +. ...-.+..|+..+||+......--+||+|||.
T Consensus 275 ---~--dLr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 275 ---S--DLRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ---H--HHHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 2 2666654432 3489999999987643322111 11 12235677899999998877667789999999
Q ss_pred CCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCC--CcHHHHHHHH-HH--HHhhhhH
Q 000914 1074 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG--YSGSDLKNLC-VT--AAHCPIR 1146 (1226)
Q Consensus 1074 p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeG--ySgsDL~~L~-~~--Aa~~air 1146 (1226)
++.||||++| |.+.+|++..-+.+.-..++..++.-.. +..-+.++....++ .+++|+.... .. .+-.+++
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk 425 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALK 425 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHH
Confidence 9999999999 9999999999999999999999987532 23334555555554 5999987443 22 3555666
Q ss_pred HHHH
Q 000914 1147 EILE 1150 (1226)
Q Consensus 1147 eli~ 1150 (1226)
++++
T Consensus 426 ~Lv~ 429 (457)
T KOG0743|consen 426 GLVE 429 (457)
T ss_pred HHHH
Confidence 6654
No 65
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.65 E-value=3.7e-15 Score=170.34 Aligned_cols=182 Identities=25% Similarity=0.451 Sum_probs=135.4
Q ss_pred CCCcccccCcHHHH---HHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 000914 920 GVTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 920 ~~tfddI~Gle~vk---~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~ 996 (1226)
..++++++|++.+. ..|.+.+. .+ ...+++||||||||||+||+.||+..+..|..++...
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~----------~~----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE----------AG----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh----------cC----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 35788999998876 34555554 12 2368999999999999999999999999999998643
Q ss_pred cccccchHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEec-
Q 000914 997 SKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT- 1071 (1226)
Q Consensus 997 s~~~Ge~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTT- 1071 (1226)
.+-+.++.+|+.|++.. ..||||||||++ +...|.+ |+-.+ +++.|++||||
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQD~-------lLp~v------E~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQDA-------LLPHV------ENGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhhhh-------hhhhh------cCCeEEEEeccC
Confidence 34567899999996543 489999999988 3333332 22222 34678888887
Q ss_pred -CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh--cccC------ChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000914 1072 -NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELA------SDVDLEGIANMADGYSGSDLKNLCVTAAH 1142 (1226)
Q Consensus 1072 -N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k--~~l~------~dvdl~~LA~~TeGySgsDL~~L~~~Aa~ 1142 (1226)
|+.+.|.+++++|. +++.+...+.++..++++..+.. .++. ++..++.|+..++|-..+.|. +++.++.
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN-~LE~~~~ 218 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALN-LLELAAL 218 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHH-HHHHHHH
Confidence 77899999999999 78999999999999999984443 2222 455678899999987666554 3444443
No 66
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.6e-16 Score=181.46 Aligned_cols=213 Identities=22% Similarity=0.304 Sum_probs=170.3
Q ss_pred cccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEeccC
Q 000914 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1226)
Q Consensus 450 ~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~~ 529 (1226)
+|.|+.||.. +..|+.|.+++...+-.++.+. +|.+.-+.|||.|||| ..++||+||+|-+.+|.|..+-.+.
T Consensus 149 ~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F~---glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 149 NVGWDDIAGL--EDAKQSLKEAVILPLLRPDLFL---GLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred cccccCCcch--hhHHHHhhhhhhhcccchHhhh---ccccccchhheecCCC--CchHHHHHHHHhhhcceEeeccHHH
Confidence 5789999999 9999999999999999998854 7889999999999999 8999999999999999999988877
Q ss_pred CCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeeeEec
Q 000914 530 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 609 (1226)
Q Consensus 530 ~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~g 609 (1226)
|++.+..|.
T Consensus 222 LtsK~~Ge~----------------------------------------------------------------------- 230 (428)
T KOG0740|consen 222 LTSKYVGES----------------------------------------------------------------------- 230 (428)
T ss_pred hhhhccChH-----------------------------------------------------------------------
Confidence 766544322
Q ss_pred ccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcChh
Q 000914 610 NVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIE 689 (1226)
Q Consensus 610 ~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi~die 689 (1226)
.-++.+||+|+.. .||.|+||+|||
T Consensus 231 ----------------------------------------------------eK~vralf~vAr~---~qPsvifidEid 255 (428)
T KOG0740|consen 231 ----------------------------------------------------EKLVRALFKVARS---LQPSVIFIDEID 255 (428)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHh---cCCeEEEechhH
Confidence 1278899999988 999999999999
Q ss_pred hhhcc--------ChhhHHHHHHHHhcC----CCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccc
Q 000914 690 KSLTG--------NNDAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 757 (1226)
Q Consensus 690 ~~l~~--------~~~~~~~l~~~L~~l----~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~ 757 (1226)
++|.. +.+....|.-.+... ..+|+|||++| +||.+|
T Consensus 256 slls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN------------------------------~P~e~D- 304 (428)
T KOG0740|consen 256 SLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN------------------------------RPWELD- 304 (428)
T ss_pred HHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC------------------------------CchHHH-
Confidence 99983 223322222222222 34999999999 777666
Q ss_pred cccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCC
Q 000914 758 LHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQT 837 (1226)
Q Consensus 758 ~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRrw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l~~~dL~~La~~tkg 837 (1226)
+++-++|.-.+.|++|++++...-|++.|..+ .+.+.+.+++.|+..|.|
T Consensus 305 ------------ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~------------------~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 305 ------------EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ------------------PNGLSDLDISLLAKVTEG 354 (428)
T ss_pred ------------HHHHHHhhceeeecCCCHHHHHHHHHHHHHhC------------------CCCccHHHHHHHHHHhcC
Confidence 56666888888888888888888887555443 134566788899999999
Q ss_pred CCHHHHHHHHhhhhhcccc
Q 000914 838 LTTEGVEKIVGWALSHHFM 856 (1226)
Q Consensus 838 ~sgadI~~Lv~~A~s~al~ 856 (1226)
|+|.||..+|..|+.--+.
T Consensus 355 ysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 355 YSGSDITALCKEAAMGPLR 373 (428)
T ss_pred cccccHHHHHHHhhcCchh
Confidence 9999999999999865443
No 67
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.9e-16 Score=192.37 Aligned_cols=217 Identities=22% Similarity=0.315 Sum_probs=172.1
Q ss_pred CCcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEE
Q 000914 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1226)
Q Consensus 446 ~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~ 525 (1226)
-.+++|+|++|-.- |..|.-|.+-+- .||+|+. |.+-=.-..+++||+|||| ++++.||||+|-+-|++++-+
T Consensus 303 ~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPG--TGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred CCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCC--CcHHHHHHHHhcccCCceeee
Confidence 67888999999999 999999999886 8999886 5543366779999999999 899999999999999999877
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCee
Q 000914 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1226)
Q Consensus 526 D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 605 (1226)
-.+.|-- .++|.
T Consensus 376 SGSEFvE---------------------------------------~~~g~----------------------------- 387 (774)
T KOG0731|consen 376 SGSEFVE---------------------------------------MFVGV----------------------------- 387 (774)
T ss_pred chHHHHH---------------------------------------Hhccc-----------------------------
Confidence 5533210 00000
Q ss_pred eEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEE
Q 000914 606 KFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFV 685 (1226)
Q Consensus 606 k~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi 685 (1226)
| --.++.||..+.. ..|+||||
T Consensus 388 ---~----------------------------------------------------asrvr~lf~~ar~---~aP~iifi 409 (774)
T KOG0731|consen 388 ---G----------------------------------------------------ASRVRDLFPLARK---NAPSIIFI 409 (774)
T ss_pred ---c----------------------------------------------------hHHHHHHHHHhhc---cCCeEEEe
Confidence 0 0046678888877 89999999
Q ss_pred cChhhhhc---------cC---hhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccC
Q 000914 686 KDIEKSLT---------GN---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAF 751 (1226)
Q Consensus 686 ~die~~l~---------~~---~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~ 751 (1226)
||||..=. ++ ....+.+--.++.+. ..||||+++| +
T Consensus 410 deida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tn------------------------------r 459 (774)
T KOG0731|consen 410 DEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATN------------------------------R 459 (774)
T ss_pred cccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccC------------------------------C
Confidence 99998421 22 345555555666653 4899999999 5
Q ss_pred CCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCC--CCccc
Q 000914 752 PDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNG--LDCVD 827 (1226)
Q Consensus 752 pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~--l~~~d 827 (1226)
||-+|. |+|| ||++++.+++|++++|..|+++|.. ... .++++
T Consensus 460 ~d~ld~-------------------------------allrpGRfdr~i~i~~p~~~~r~~i~~~h~~--~~~~~~e~~d 506 (774)
T KOG0731|consen 460 PDILDP-------------------------------ALLRPGRFDRQIQIDLPDVKGRASILKVHLR--KKKLDDEDVD 506 (774)
T ss_pred ccccCH-------------------------------HhcCCCccccceeccCCchhhhHHHHHHHhh--ccCCCcchhh
Confidence 555554 9999 9999999999999999999999944 434 47889
Q ss_pred chhhhcccCCCCHHHHHHHHhhhhhcccccc
Q 000914 828 LESLCIKDQTLTTEGVEKIVGWALSHHFMHC 858 (1226)
Q Consensus 828 L~~La~~tkg~sgadI~~Lv~~A~s~al~r~ 858 (1226)
+..||.+|.||+||||.-+|++|+..|..+.
T Consensus 507 l~~~a~~t~gf~gadl~n~~neaa~~a~r~~ 537 (774)
T KOG0731|consen 507 LSKLASLTPGFSGADLANLCNEAALLAARKG 537 (774)
T ss_pred HHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc
Confidence 9999999999999999999999999998743
No 68
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.63 E-value=1e-14 Score=165.79 Aligned_cols=199 Identities=21% Similarity=0.243 Sum_probs=137.9
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccccc
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1001 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G 1001 (1226)
+|++++|++++++.|..++.....+ ..++.+++|+||||||||+||+++|++++..+..+.+..+.. .
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--P- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--c-
Confidence 6899999999999998887532111 223467999999999999999999999998877766543221 1
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhc--cCC-cc----cCCCcEEEEEecCCC
Q 000914 1002 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGL-RT----KDKERVLVLAATNRP 1074 (1226)
Q Consensus 1002 e~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~l--dgl-~~----k~~~~VlVIaTTN~p 1074 (1226)
..+...+... ..+.||||||||.+. ...++.+..+++.....+ +.- .. ....++.+|++|+++
T Consensus 70 ---~~l~~~l~~~--~~~~vl~iDEi~~l~-----~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 70 ---GDLAAILTNL--EEGDVLFIDEIHRLS-----PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred ---hhHHHHHHhc--ccCCEEEEehHhhhC-----HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 1222222222 346899999999883 223333433433322111 100 00 011347899999999
Q ss_pred CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000914 1075 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1143 (1226)
Q Consensus 1075 ~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~ 1143 (1226)
..+++++++||...+.+..|+.+++.++++..+....+. ++..+..|+..+.|+. +.+.+++..+...
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDF 208 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHH
Confidence 999999999998888999999999999999988765443 5556788999998875 5556777765533
No 69
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.63 E-value=5.7e-16 Score=200.61 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhccChh---hHHHHHHHHhcC-----CCCEEEEEeccCCCCccccCCCCC
Q 000914 662 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGNND---AYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGG 733 (1226)
Q Consensus 662 k~~~~~l~evl~~es~~~P~Ilfi~die~~l~~~~~---~~~~l~~~L~~l-----~g~vvvIgs~~~~d~~k~k~~~~~ 733 (1226)
..-|..+|+.+.. ..|+||||||||. |+.+.+ ..+.|...|+.. ..+||||||||
T Consensus 1718 ~~rIr~lFelARk---~SPCIIFIDEIDa-L~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATN------------- 1780 (2281)
T CHL00206 1718 RFYITLQFELAKA---MSPCIIWIPNIHD-LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTH------------- 1780 (2281)
T ss_pred HHHHHHHHHHHHH---CCCeEEEEEchhh-cCCCccceehHHHHHHHhccccccCCCCCEEEEEeCC-------------
Confidence 3458999999987 8999999999999 553322 245666666644 23799999999
Q ss_pred ceeeccCcchhhhhcccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccch
Q 000914 734 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 811 (1226)
Q Consensus 734 ~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nI 811 (1226)
+||.+|+ |++| ||++++++++|++.+|..+
T Consensus 1781 -----------------RPD~LDP-------------------------------ALLRPGRFDR~I~Ir~Pd~p~R~ki 1812 (2281)
T CHL00206 1781 -----------------IPQKVDP-------------------------------ALIAPNKLNTCIKIRRLLIPQQRKH 1812 (2281)
T ss_pred -----------------CcccCCH-------------------------------hHcCCCCCCeEEEeCCCCchhHHHH
Confidence 6777775 9998 9999999999999999998
Q ss_pred hHHHHHhhhCCC--CcccchhhhcccCCCCHHHHHHHHhhhhhcccccc
Q 000914 812 ISIRSVLSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 858 (1226)
Q Consensus 812 l~IhT~L~~n~l--~~~dL~~La~~tkg~sgadI~~Lv~~A~s~al~r~ 858 (1226)
+.|+...+.-.+ .+++++.+|..|.||+||||+.||++|++.|+.+.
T Consensus 1813 L~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1813 FFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 887533333333 34689999999999999999999999999998754
No 70
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.63 E-value=2.9e-14 Score=164.43 Aligned_cols=201 Identities=21% Similarity=0.256 Sum_probs=141.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1000 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~ 1000 (1226)
.+|++++|+++.++.+..++..... . ..++.++||+||||||||++|+++|++++..+..++...+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 5799999999999999887753111 1 234578999999999999999999999999887776554321
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhh--ccCCccc-----CCCcEEEEEecCC
Q 000914 1001 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTK-----DKERVLVLAATNR 1073 (1226)
Q Consensus 1001 Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~--ldgl~~k-----~~~~VlVIaTTN~ 1073 (1226)
...+..++... ..++||||||||.+. ...++.+..+++..... ++.-... .-.++.+|++|++
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 12344444432 346899999999883 22233333333332111 1110000 1134788999999
Q ss_pred CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000914 1074 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1144 (1226)
Q Consensus 1074 p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~a 1144 (1226)
+..+++.+++||...+.++.|+.+++.+|++..+...++. ++..+..|+..+.|+. +.+..+++.+...+
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a 230 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFA 230 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 9999999999998889999999999999999988876554 5556889999998864 66666666554433
No 71
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.9e-16 Score=170.56 Aligned_cols=228 Identities=22% Similarity=0.278 Sum_probs=176.5
Q ss_pred ccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEeccCC
Q 000914 451 VSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (1226)
Q Consensus 451 vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~~~ 530 (1226)
.||.+.... |+..+-+.+++-.+|.||++ |-.-=-...+++.|+|+|| ..++.||||.|++-.|.||-+=.+.|
T Consensus 182 Ety~diGGl--e~QiQEiKEsvELPLthPE~--YeemGikpPKGVIlyG~PG--TGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 182 ETYADIGGL--ESQIQEIKESVELPLTHPEY--YEEMGIKPPKGVILYGEPG--TGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred hhhcccccH--HHHHHHHHHhhcCCCCCHHH--HHHcCCCCCCeeEEeCCCC--CchhHHHHHHhcccchhhhhhhhHHH
Confidence 468999999 99999999999999999998 5433345668899999999 89999999999999888875432221
Q ss_pred CCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeeeEecc
Q 000914 531 PGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGN 610 (1226)
Q Consensus 531 ~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~g~ 610 (1226)
-- ||.|
T Consensus 256 iQ-------------------------------------------------------------------------kylG- 261 (440)
T KOG0726|consen 256 IQ-------------------------------------------------------------------------KYLG- 261 (440)
T ss_pred HH-------------------------------------------------------------------------HHhc-
Confidence 00 1111
Q ss_pred cCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcChhh
Q 000914 611 VTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEK 690 (1226)
Q Consensus 611 ~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi~die~ 690 (1226)
|.-.++.+||.|+.+ +.|.|+|||+||.
T Consensus 262 -------------------------------------------------dGpklvRqlF~vA~e---~apSIvFiDEIdA 289 (440)
T KOG0726|consen 262 -------------------------------------------------DGPKLVRELFRVAEE---HAPSIVFIDEIDA 289 (440)
T ss_pred -------------------------------------------------cchHHHHHHHHHHHh---cCCceEEeehhhh
Confidence 111388999999988 9999999999999
Q ss_pred hhc--------cChhhHHHHHHHHhcCC-----CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccc
Q 000914 691 SLT--------GNNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 757 (1226)
Q Consensus 691 ~l~--------~~~~~~~~l~~~L~~l~-----g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~ 757 (1226)
.=. +.+++-...-..|.+|. |-|-||.++|+.++ |||
T Consensus 290 iGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~----------------------LDP-------- 339 (440)
T KOG0726|consen 290 IGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET----------------------LDP-------- 339 (440)
T ss_pred hccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc----------------------cCH--------
Confidence 422 23455444455555553 58999999997666 343
Q ss_pred cccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHH-hhhCCCCcccchhhhcc
Q 000914 758 LHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIK 834 (1226)
Q Consensus 758 ~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~-L~~n~l~~~dL~~La~~ 834 (1226)
||+| |.++.+++.+|+.+.+..|+.|||- |... .+++|++|-..
T Consensus 340 -------------------------------aLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~--~dVnle~li~~ 386 (440)
T KOG0726|consen 340 -------------------------------ALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA--EDVNLEELIMT 386 (440)
T ss_pred -------------------------------hhcCCCccccccccCCCchhhhceeEEEeecccchh--ccccHHHHhhc
Confidence 8888 8889999999999999999999985 4421 68899999999
Q ss_pred cCCCCHHHHHHHHhhhhhcccccccCCCCCCCcccccccchHhhHHHHHhhhhh
Q 000914 835 DQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSE 888 (1226)
Q Consensus 835 tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~e 888 (1226)
..-++||||.++|++|-..|+.. ..+.++..||+.+...
T Consensus 387 kddlSGAdIkAictEaGllAlRe---------------rRm~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 387 KDDLSGADIKAICTEAGLLALRE---------------RRMKVTMEDFKKAKEK 425 (440)
T ss_pred ccccccccHHHHHHHHhHHHHHH---------------HHhhccHHHHHHHHHH
Confidence 99999999999999999998863 2345677888766543
No 72
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.62 E-value=1.1e-15 Score=180.20 Aligned_cols=216 Identities=21% Similarity=0.325 Sum_probs=154.8
Q ss_pred CCcccccccccccccchHHHHHHHHhhhhhcccccccc-ccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEE
Q 000914 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAK-YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1226)
Q Consensus 446 ~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~-~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~ 524 (1226)
-+.-+|+|+++..+ |..|..|.++.-.+|+++++.+ ++ + ...+.|||+|||| +++++||||+|++.++.++.
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l-~~pkgvLL~GppG--TGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--I-DPPRGVLLYGPPG--TGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--C-CCCceEEEECCCC--CCHHHHHHHHHHhcCCCEEE
Confidence 34678999999999 9999999999999999998753 33 3 3568899999999 99999999999999988877
Q ss_pred EeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCe
Q 000914 525 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 604 (1226)
Q Consensus 525 ~D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 604 (1226)
+..+.+...
T Consensus 210 i~~s~l~~k----------------------------------------------------------------------- 218 (398)
T PTZ00454 210 VVGSEFVQK----------------------------------------------------------------------- 218 (398)
T ss_pred EehHHHHHH-----------------------------------------------------------------------
Confidence 753222110
Q ss_pred eeEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEE
Q 000914 605 VKFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVF 684 (1226)
Q Consensus 605 vk~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilf 684 (1226)
|+| .....+..+|+.+.. .+|.|||
T Consensus 219 --~~g--------------------------------------------------e~~~~lr~lf~~A~~---~~P~ILf 243 (398)
T PTZ00454 219 --YLG--------------------------------------------------EGPRMVRDVFRLARE---NAPSIIF 243 (398)
T ss_pred --hcc--------------------------------------------------hhHHHHHHHHHHHHh---cCCeEEE
Confidence 000 011245677777765 7899999
Q ss_pred EcChhhhhccC--------hhh---HHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccC
Q 000914 685 VKDIEKSLTGN--------NDA---YGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAF 751 (1226)
Q Consensus 685 i~die~~l~~~--------~~~---~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~ 751 (1226)
|||+|.++..+ .+. ...|-..++.+. .+|+||++++ .
T Consensus 244 IDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN------------------------------~ 293 (398)
T PTZ00454 244 IDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN------------------------------R 293 (398)
T ss_pred EECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecC------------------------------C
Confidence 99999976421 122 222333344332 4899999999 3
Q ss_pred CCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCC-Ccccc
Q 000914 752 PDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDL 828 (1226)
Q Consensus 752 pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l-~~~dL 828 (1226)
||.++. +++| ||.+.+++++|+...|..|+++|+. ..++ .++++
T Consensus 294 ~d~LDp-------------------------------AllR~GRfd~~I~~~~P~~~~R~~Il~~~~~--~~~l~~dvd~ 340 (398)
T PTZ00454 294 ADTLDP-------------------------------ALLRPGRLDRKIEFPLPDRRQKRLIFQTITS--KMNLSEEVDL 340 (398)
T ss_pred chhCCH-------------------------------HHcCCCcccEEEEeCCcCHHHHHHHHHHHHh--cCCCCcccCH
Confidence 444443 4444 5555555556665566666666643 3344 67899
Q ss_pred hhhhcccCCCCHHHHHHHHhhhhhccccc
Q 000914 829 ESLCIKDQTLTTEGVEKIVGWALSHHFMH 857 (1226)
Q Consensus 829 ~~La~~tkg~sgadI~~Lv~~A~s~al~r 857 (1226)
+.++..|.||+|+||+.+|+.|...|+.+
T Consensus 341 ~~la~~t~g~sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 341 EDFVSRPEKISAADIAAICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998864
No 73
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.61 E-value=2.5e-15 Score=177.18 Aligned_cols=234 Identities=22% Similarity=0.261 Sum_probs=158.8
Q ss_pred CcccccccccccccchHHHHHHHHhhhhhcccccccc-ccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEE
Q 000914 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAK-YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1226)
Q Consensus 447 ~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~-~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~ 525 (1226)
+..+++|++++++ |..+.-|.+....++++++..+ ++ -...++|||+|||| +++++||||+|++++++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppG--tGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCC--CChHHHHHHHHHHhCCCEEEe
Confidence 4568999999999 9999999999999999988753 33 23346899999999 899999999999999998887
Q ss_pred eccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCee
Q 000914 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1226)
Q Consensus 526 D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v 605 (1226)
+.+.+...+.
T Consensus 197 ~~~~l~~~~~---------------------------------------------------------------------- 206 (389)
T PRK03992 197 VGSELVQKFI---------------------------------------------------------------------- 206 (389)
T ss_pred ehHHHhHhhc----------------------------------------------------------------------
Confidence 6544322110
Q ss_pred eEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEE
Q 000914 606 KFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFV 685 (1226)
Q Consensus 606 k~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi 685 (1226)
| .....+..+|+.+.. ..|.||||
T Consensus 207 ---g--------------------------------------------------~~~~~i~~~f~~a~~---~~p~Ilfi 230 (389)
T PRK03992 207 ---G--------------------------------------------------EGARLVRELFELARE---KAPSIIFI 230 (389)
T ss_pred ---c--------------------------------------------------chHHHHHHHHHHHHh---cCCeEEEE
Confidence 0 001145667777765 78999999
Q ss_pred cChhhhhcc--------ChhhHHHHHHHHhcCC-----CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCC
Q 000914 686 KDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 752 (1226)
Q Consensus 686 ~die~~l~~--------~~~~~~~l~~~L~~l~-----g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~p 752 (1226)
||+|.++.. ..+.-..+...|..+. ++|+|||++|+.
T Consensus 231 DEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~------------------------------ 280 (389)
T PRK03992 231 DEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRI------------------------------ 280 (389)
T ss_pred echhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCCh------------------------------
Confidence 999997542 1222223333333332 489999999943
Q ss_pred CCccccccccccchHHHHHHhh--hCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCC-Ccccch
Q 000914 753 DNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLE 829 (1226)
Q Consensus 753 d~~~~~~~~~~~~~~~~~~l~~--lf~~~i~i~~P~DeALLRrw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l-~~~dL~ 829 (1226)
+.++. ++-+ +|...|+|++|+.++ |..|+++|. ....+ .+.++.
T Consensus 281 ~~ld~-------------allRpgRfd~~I~v~~P~~~~------------------R~~Il~~~~--~~~~~~~~~~~~ 327 (389)
T PRK03992 281 DILDP-------------AILRPGRFDRIIEVPLPDEEG------------------RLEILKIHT--RKMNLADDVDLE 327 (389)
T ss_pred hhCCH-------------HHcCCccCceEEEECCCCHHH------------------HHHHHHHHh--ccCCCCCcCCHH
Confidence 32332 1111 344455555555444 444455552 23334 457899
Q ss_pred hhhcccCCCCHHHHHHHHhhhhhcccccccCCCCCCCcccccccchHhhHHHHHhhhhhhhh
Q 000914 830 SLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKS 891 (1226)
Q Consensus 830 ~La~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~ 891 (1226)
.||..|.||+|+||+.+|+.|...|+.+... .+...+|+.+...+.+
T Consensus 328 ~la~~t~g~sgadl~~l~~eA~~~a~~~~~~---------------~i~~~d~~~A~~~~~~ 374 (389)
T PRK03992 328 ELAELTEGASGADLKAICTEAGMFAIRDDRT---------------EVTMEDFLKAIEKVMG 374 (389)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHcCCC---------------CcCHHHHHHHHHHHhc
Confidence 9999999999999999999999998874211 2356777777665543
No 74
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.59 E-value=2e-14 Score=182.76 Aligned_cols=213 Identities=18% Similarity=0.252 Sum_probs=143.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--------
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 996 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~-------- 996 (1226)
++.|++++++.+.+++.....+. . . ....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~-~-~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------K-M-KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------C-C-CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 58899999999999876432211 1 1 223799999999999999999999999999999876432
Q ss_pred -cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHh-----hhhhccCCcccCCCcEEEEEe
Q 000914 997 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 1070 (1226)
Q Consensus 997 -s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~-----Ll~~ldgl~~k~~~~VlVIaT 1070 (1226)
..|.|.....+...|..+....| ||||||||.+...... ....++..++.. |+....+.. -+-.++++|+|
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~~~aLl~~ld~~~~~~f~d~~~~~~-~d~s~v~~I~T 469 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DPASALLEVLDPEQNNAFSDHYLDVP-FDLSKVIFIAT 469 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CHHHHHHHhcCHHhcCccccccCCce-eccCCEEEEEe
Confidence 24566666677788888766565 8999999999643221 112223333221 111111111 12257899999
Q ss_pred cCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh-----ccc------CChhcHHHHHHH-cCCCcHHHHHHHHH
Q 000914 1071 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EEL------ASDVDLEGIANM-ADGYSGSDLKNLCV 1138 (1226)
Q Consensus 1071 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k-----~~l------~~dvdl~~LA~~-TeGySgsDL~~L~~ 1138 (1226)
||..+.+++++++|| .+|.|+.|+.+++.+|++.++.. ..+ .++..+..|++. +..+..++|+.+++
T Consensus 470 tN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 470 ANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred cCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 999999999999999 58899999999999999887632 122 133345555542 22344466766666
Q ss_pred HHHhhhhHHHH
Q 000914 1139 TAAHCPIREIL 1149 (1226)
Q Consensus 1139 ~Aa~~aireli 1149 (1226)
..+..+.++++
T Consensus 549 ~~~~~~~~~~~ 559 (775)
T TIGR00763 549 KICRKAAVKLV 559 (775)
T ss_pred HHHHHHHHHHH
Confidence 66555545443
No 75
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.57 E-value=2.5e-14 Score=179.83 Aligned_cols=197 Identities=19% Similarity=0.288 Sum_probs=143.8
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 991 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v~ 991 (1226)
.++.++|.++....+.+.+.. +...++||+||||||||++|+++|+.. +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 456789999998888887652 123578999999999999999999875 45566666
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEE
Q 000914 992 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1069 (1226)
Q Consensus 992 ~s~L~--s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIa 1069 (1226)
...+. ..+.|+.+..++.+|..+.+..++||||||||.|++.+...+.+.....++..++ .+..+.||+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 55554 3567888999999999998888999999999999876643232222223333332 236799999
Q ss_pred ecCCCC-----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-----ChhcHHHHHHHcCC-----CcHHHHH
Q 000914 1070 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADG-----YSGSDLK 1134 (1226)
Q Consensus 1070 TTN~p~-----~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-----~dvdl~~LA~~TeG-----ySgsDL~ 1134 (1226)
+|+..+ ..|+++.||| ..|.|+.|+.+++.+||+.+..+.... .+..+..++..+.. +.+....
T Consensus 321 ATt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998753 6799999999 489999999999999999887664333 33334444444443 3455666
Q ss_pred HHHHHHHh
Q 000914 1135 NLCVTAAH 1142 (1226)
Q Consensus 1135 ~L~~~Aa~ 1142 (1226)
.|+.+|+.
T Consensus 400 dlldea~a 407 (758)
T PRK11034 400 DVIDEAGA 407 (758)
T ss_pred HHHHHHHH
Confidence 77777764
No 76
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.57 E-value=3.7e-14 Score=173.23 Aligned_cols=201 Identities=23% Similarity=0.305 Sum_probs=135.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 989 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~ 989 (1226)
..+|++++|.+..++.++..+. ...+.++||+||||||||++|+++++++ +.+|+.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~--------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALC--------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 4689999999999988876543 1123589999999999999999998753 368999
Q ss_pred EecCcc-------ccccccchHH----------------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHH
Q 000914 990 ISMSSI-------TSKWFGEGEK----------------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1046 (1226)
Q Consensus 990 v~~s~L-------~s~~~Ge~e~----------------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~v 1046 (1226)
++|... ....++.... ...+.+..| ..++||||||+.| ++..+..+.++
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L-----~~~~q~~LL~~ 198 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGEL-----HPVQMNKLLKV 198 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhC-----CHHHHHHHHHH
Confidence 998642 1111111000 001122222 3489999999998 44455555555
Q ss_pred HHhhhhhccC-----C------------cccCCCcEEEE-EecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHh
Q 000914 1047 KNEFMVNWDG-----L------------RTKDKERVLVL-AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1108 (1226)
Q Consensus 1047 l~~Ll~~ldg-----l------------~~k~~~~VlVI-aTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~ 1108 (1226)
+++....+.. . ....+..+++| +||+.++.+++++++|+ ..+.++.++.+++.+|++..++
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHH
Confidence 5543322220 0 00112344555 55678999999999998 5788888899999999999998
Q ss_pred hcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhh
Q 000914 1109 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPI 1145 (1226)
Q Consensus 1109 k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~ai 1145 (1226)
+..+. ++..++.|+..+ ++++++.++++.|+..+.
T Consensus 278 k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~ 313 (531)
T TIGR02902 278 KIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIAL 313 (531)
T ss_pred HcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHh
Confidence 86644 455567777655 378999999998876543
No 77
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.55 E-value=1e-13 Score=177.04 Aligned_cols=185 Identities=19% Similarity=0.338 Sum_probs=139.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 990 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v 990 (1226)
..+++++|.++....+.+.+.. +..+++||+||||||||++|+.+|+.+ +..++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4677899999987777665541 223579999999999999999999986 3557888
Q ss_pred ecCcccc--ccccchHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEE
Q 000914 991 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1067 (1226)
Q Consensus 991 ~~s~L~s--~~~Ge~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlV 1067 (1226)
+...+.. .+.|+.+..++.+|..+... .+.||||||||.|.+.+...+.+...+ + |.-.+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n-~---Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN-L---LKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH-H---hhHHh------hCCCeEE
Confidence 8877653 57788899999999998753 578999999999987654333333221 2 21111 2367899
Q ss_pred EEecCCC-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcc----c-CChhcHHHHHHHcCCCcH
Q 000914 1068 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1068 IaTTN~p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~----l-~~dvdl~~LA~~TeGySg 1130 (1226)
||||+.. ..++++|.||| ..|.|+.|+.+++.+||+.+..... + ..+..+..++.++.+|..
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 9999753 46899999999 5899999999999999877665422 2 267778899999988843
No 78
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.55 E-value=6.9e-15 Score=178.53 Aligned_cols=216 Identities=23% Similarity=0.329 Sum_probs=149.6
Q ss_pred cCCCcccccccccccccchHHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeE
Q 000914 444 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1226)
Q Consensus 444 v~~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~l 522 (1226)
...+..+++|++++.+ ++.|..|.+.+.. |++++.. +++ ....+.|||+|||| +++++||||||++.++++
T Consensus 45 ~~~~~~~~~~~di~g~--~~~k~~l~~~~~~-l~~~~~~~~~g---~~~~~giLL~GppG--tGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGI--DEAKEELMEIVDF-LKNPSKFTKLG---AKIPKGVLLVGPPG--TGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred ccCCCCCCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHhcC---CCCCCcEEEECCCC--CCHHHHHHHHHHHcCCCe
Confidence 3455789999999999 9999999987764 7877643 333 24457899999999 999999999999999988
Q ss_pred EEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCC
Q 000914 523 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 602 (1226)
Q Consensus 523 L~~D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 602 (1226)
+.++.+.+..... |
T Consensus 117 ~~i~~~~~~~~~~------------------------------------------------------------------g 130 (495)
T TIGR01241 117 FSISGSDFVEMFV------------------------------------------------------------------G 130 (495)
T ss_pred eeccHHHHHHHHh------------------------------------------------------------------c
Confidence 7766433211000 0
Q ss_pred CeeeEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeE
Q 000914 603 DRVKFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLI 682 (1226)
Q Consensus 603 d~vk~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~I 682 (1226)
...-.+..+|+.+.. ..|.|
T Consensus 131 ---------------------------------------------------------~~~~~l~~~f~~a~~---~~p~I 150 (495)
T TIGR01241 131 ---------------------------------------------------------VGASRVRDLFEQAKK---NAPCI 150 (495)
T ss_pred ---------------------------------------------------------ccHHHHHHHHHHHHh---cCCCE
Confidence 000134566666655 78999
Q ss_pred EEEcChhhhhccC-----------hhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcc
Q 000914 683 VFVKDIEKSLTGN-----------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDL 749 (1226)
Q Consensus 683 lfi~die~~l~~~-----------~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~ 749 (1226)
|||||+|.+.... .+..+.|-..++.+. ++|+|||++|
T Consensus 151 l~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn----------------------------- 201 (495)
T TIGR01241 151 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATN----------------------------- 201 (495)
T ss_pred EEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecC-----------------------------
Confidence 9999999975421 123333334444443 3799999999
Q ss_pred cCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCC-Ccc
Q 000914 750 AFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCV 826 (1226)
Q Consensus 750 ~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l-~~~ 826 (1226)
+|+.++. +++| ||.+++++++|+...|..|+++|. ....+ .+.
T Consensus 202 -~~~~ld~-------------------------------al~r~gRfd~~i~i~~Pd~~~R~~il~~~l--~~~~~~~~~ 247 (495)
T TIGR01241 202 -RPDVLDP-------------------------------ALLRPGRFDRQVVVDLPDIKGREEILKVHA--KNKKLAPDV 247 (495)
T ss_pred -ChhhcCH-------------------------------HHhcCCcceEEEEcCCCCHHHHHHHHHHHH--hcCCCCcch
Confidence 4444443 5555 566666666666666666666653 22233 567
Q ss_pred cchhhhcccCCCCHHHHHHHHhhhhhcccc
Q 000914 827 DLESLCIKDQTLTTEGVEKIVGWALSHHFM 856 (1226)
Q Consensus 827 dL~~La~~tkg~sgadI~~Lv~~A~s~al~ 856 (1226)
++..+|..+.||+++||+.+|+.|+..+..
T Consensus 248 ~l~~la~~t~G~sgadl~~l~~eA~~~a~~ 277 (495)
T TIGR01241 248 DLKAVARRTPGFSGADLANLLNEAALLAAR 277 (495)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999877654
No 79
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.54 E-value=9.3e-14 Score=152.83 Aligned_cols=189 Identities=23% Similarity=0.312 Sum_probs=141.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 999 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 999 (1226)
...|++++|++++|++|.-++.....+ ....-++|||||||.|||+||..||+++|.++...+++.+.-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 457999999999999998888753332 234468999999999999999999999999998888776532
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhcc-CCccc------CCCcEEEEEecC
Q 000914 1000 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTK------DKERVLVLAATN 1072 (1226)
Q Consensus 1000 ~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ld-gl~~k------~~~~VlVIaTTN 1072 (1226)
...+..++... ....||||||||+| ++...+.+.-+++.|...+- |..+. +-.++-+|+||.
T Consensus 91 ----~gDlaaiLt~L--e~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 91 ----PGDLAAILTNL--EEGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred ----hhhHHHHHhcC--CcCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 12333444332 23479999999999 44555566556665543221 11111 125689999999
Q ss_pred CCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1073 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1073 ~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
+...|...++.||..+..+...+.++..+|+........+. ++....++|+...|...
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 99999999999999999999999999999999988776654 45567889999988543
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.3e-13 Score=167.61 Aligned_cols=185 Identities=21% Similarity=0.241 Sum_probs=135.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 985 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~-------------- 985 (1226)
..+|++|+|++.+++.|.+.+.. .+.++.+||+||+|+|||++|+.||+.+++
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 46899999999999999998863 233467899999999999999999999976
Q ss_pred ---------------cEEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHH
Q 000914 986 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1046 (1226)
Q Consensus 986 ---------------~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~v 1046 (1226)
.++.++... ...-..++.+.+.+.. ..-.|+||||+|.|. ...
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~A 140 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHA 140 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHH
Confidence 223333221 1122345555554432 234699999999982 223
Q ss_pred HHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc
Q 000914 1047 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1125 (1226)
Q Consensus 1047 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~T 1125 (1226)
.|.|+..|+. ...+++||.+|+.++.|.+.+++|| .++.|..++.++..+.|+.++..+++. ++..+..|+..+
T Consensus 141 aNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4556665554 3366889999999999999999999 789999999999999999988876654 344577888888
Q ss_pred CCCcHHHHHHHHHHHH
Q 000914 1126 DGYSGSDLKNLCVTAA 1141 (1226)
Q Consensus 1126 eGySgsDL~~L~~~Aa 1141 (1226)
+|- .++..+++..+.
T Consensus 216 ~Gs-~RdALsLLdQai 230 (700)
T PRK12323 216 QGS-MRDALSLTDQAI 230 (700)
T ss_pred CCC-HHHHHHHHHHHH
Confidence 874 555566665543
No 81
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.8e-13 Score=162.99 Aligned_cols=185 Identities=18% Similarity=0.232 Sum_probs=134.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++++|++.+...|...+.. .+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 46899999999999999888762 2233569999999999999999999998763
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 987 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 987 -----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
|+.++.+. ..+-..++.+...+. .....|+||||+|.|- ....+.|+
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALL 142 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALL 142 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHH
Confidence 33333211 011233454444333 2234699999999882 22345555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+++|++|+.++.|.+++++|+ .++.|..++.++-.++++.++..+++. ++..+..|+..++|. .
T Consensus 143 KtLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd-~ 216 (484)
T PRK14956 143 KTLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS-V 216 (484)
T ss_pred HHhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-H
Confidence 55543 3467899999999999999999999 678999999999999999998887654 666788899999885 5
Q ss_pred HHHHHHHHHHH
Q 000914 1131 SDLKNLCVTAA 1141 (1226)
Q Consensus 1131 sDL~~L~~~Aa 1141 (1226)
++..++++.+.
T Consensus 217 RdAL~lLeq~i 227 (484)
T PRK14956 217 RDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 82
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.5e-14 Score=153.86 Aligned_cols=209 Identities=22% Similarity=0.293 Sum_probs=157.6
Q ss_pred cccccccccchHHHHHHHHhhhhhccccccccccCCC-CCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEeccCC
Q 000914 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDL-PTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (1226)
Q Consensus 452 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l-~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~~~ 530 (1226)
|++-.... +....-..+..-.+.|||++++ .| -.-.+++||+|||| .++..||+|.|||-+.+|+-+..+.|
T Consensus 145 tYeMiGgL--d~QIkeIkEVIeLPvKHPELF~---aLGIaQPKGvlLygppg--tGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 145 TYEMIGGL--DKQIKEIKEVIELPVKHPELFE---ALGIAQPKGVLLYGPPG--TGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred HHHHhccH--HHHHHHHHHHHhccccCHHHHH---hcCCCCCcceEEecCCC--CchhHHHHHHHhhcceEEEEechHHH
Confidence 44544444 4444456677778999999965 23 34568999999999 89999999999999999987653221
Q ss_pred CCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeeeEecc
Q 000914 531 PGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGN 610 (1226)
Q Consensus 531 ~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~g~ 610 (1226)
-- ||+|-
T Consensus 218 vq-------------------------------------------------------------------------k~ige 224 (404)
T KOG0728|consen 218 VQ-------------------------------------------------------------------------KYIGE 224 (404)
T ss_pred HH-------------------------------------------------------------------------HHhhh
Confidence 00 23321
Q ss_pred cCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcChhh
Q 000914 611 VTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEK 690 (1226)
Q Consensus 611 ~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi~die~ 690 (1226)
.-..+.+||=++.+ +.|.|||+|+||.
T Consensus 225 --------------------------------------------------gsrmvrelfvmare---hapsiifmdeids 251 (404)
T KOG0728|consen 225 --------------------------------------------------GSRMVRELFVMARE---HAPSIIFMDEIDS 251 (404)
T ss_pred --------------------------------------------------hHHHHHHHHHHHHh---cCCceEeeecccc
Confidence 12378899999988 9999999999999
Q ss_pred hhc--------cChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccc
Q 000914 691 SLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 757 (1226)
Q Consensus 691 ~l~--------~~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~ 757 (1226)
+=. +..+.-...-+.|.+|.| ++-||.++|++|- +|
T Consensus 252 igs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi----------------------ld--------- 300 (404)
T KOG0728|consen 252 IGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI----------------------LD--------- 300 (404)
T ss_pred cccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc----------------------cc---------
Confidence 422 234444444455555654 9999999997554 33
Q ss_pred cccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHH-hhhCCCCcccchhhhcc
Q 000914 758 LHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIK 834 (1226)
Q Consensus 758 ~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~-L~~n~l~~~dL~~La~~ 834 (1226)
.|+|| |.++.+|++-|+..+|.+|++||.+ |.. .-..+|..+|.+
T Consensus 301 ------------------------------~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl--~rgi~l~kiaek 348 (404)
T KOG0728|consen 301 ------------------------------PALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL--TRGINLRKIAEK 348 (404)
T ss_pred ------------------------------HhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch--hcccCHHHHHHh
Confidence 28888 8888999999999999999999976 431 145789999999
Q ss_pred cCCCCHHHHHHHHhhhhhcccc
Q 000914 835 DQTLTTEGVEKIVGWALSHHFM 856 (1226)
Q Consensus 835 tkg~sgadI~~Lv~~A~s~al~ 856 (1226)
..|-+||++.++|++|--||+.
T Consensus 349 m~gasgaevk~vcteagm~alr 370 (404)
T KOG0728|consen 349 MPGASGAEVKGVCTEAGMYALR 370 (404)
T ss_pred CCCCccchhhhhhhhhhHHHHH
Confidence 9999999999999999999986
No 83
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.3e-14 Score=153.55 Aligned_cols=214 Identities=20% Similarity=0.287 Sum_probs=164.3
Q ss_pred cccccccccccccchHHHHHHHHhhhhhccccccccccCCC-CCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEe
Q 000914 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDL-PTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1226)
Q Consensus 448 ~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l-~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D 526 (1226)
.-..++.+.... |...+-|++|...++.|++-++ +| -...+++|++|||| .++++||+|-|-+-.|.||-|
T Consensus 165 kPtE~YsDiGGl--dkQIqELvEAiVLpmth~ekF~---~lgi~pPKGvLmYGPPG--TGKTlmARAcAaqT~aTFLKL- 236 (424)
T KOG0652|consen 165 KPTEQYSDIGGL--DKQIQELVEAIVLPMTHKEKFE---NLGIRPPKGVLMYGPPG--TGKTLMARACAAQTNATFLKL- 236 (424)
T ss_pred CCcccccccccH--HHHHHHHHHHhccccccHHHHH---hcCCCCCCceEeeCCCC--CcHHHHHHHHHHhccchHHHh-
Confidence 345578888888 9999999999999999998653 33 34568999999999 899999999999999887643
Q ss_pred ccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeee
Q 000914 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1226)
Q Consensus 527 ~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk 606 (1226)
+|- . +.+ -
T Consensus 237 ----AgP-Q------------------------------------------------LVQ-------------------M 244 (424)
T KOG0652|consen 237 ----AGP-Q------------------------------------------------LVQ-------------------M 244 (424)
T ss_pred ----cch-H------------------------------------------------HHh-------------------h
Confidence 221 0 000 0
Q ss_pred EecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEc
Q 000914 607 FVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVK 686 (1226)
Q Consensus 607 ~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi~ 686 (1226)
|+| |.--++...|.++.+ ..|.|||||
T Consensus 245 fIG--------------------------------------------------dGAkLVRDAFaLAKE---kaP~IIFID 271 (424)
T KOG0652|consen 245 FIG--------------------------------------------------DGAKLVRDAFALAKE---KAPTIIFID 271 (424)
T ss_pred hhc--------------------------------------------------chHHHHHHHHHHhhc---cCCeEEEEe
Confidence 111 112266677888877 899999999
Q ss_pred Chhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCC
Q 000914 687 DIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 753 (1226)
Q Consensus 687 die~~l~--------~~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd 753 (1226)
++|.+=. |..+.-...-..|.+|.| .|-||+++|+.|- +||
T Consensus 272 ElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi----------------------LDP---- 325 (424)
T KOG0652|consen 272 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI----------------------LDP---- 325 (424)
T ss_pred chhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc----------------------cCH----
Confidence 9998422 344444444444444433 8999999996554 333
Q ss_pred CccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHH-hhhCCCCcccchh
Q 000914 754 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLES 830 (1226)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~-L~~n~l~~~dL~~ 830 (1226)
|+|| |+++.+++++|+..+|..|++||.+ |.-+ ++++.++
T Consensus 326 -----------------------------------ALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~--~DvNfeE 368 (424)
T KOG0652|consen 326 -----------------------------------ALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS--DDVNFEE 368 (424)
T ss_pred -----------------------------------HHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC--CCCCHHH
Confidence 9999 9999999999999999999999976 5433 6889999
Q ss_pred hhcccCCCCHHHHHHHHhhhhhccccc
Q 000914 831 LCIKDQTLTTEGVEKIVGWALSHHFMH 857 (1226)
Q Consensus 831 La~~tkg~sgadI~~Lv~~A~s~al~r 857 (1226)
||..|..|.||...++|-+|--.|+.|
T Consensus 369 LaRsTddFNGAQcKAVcVEAGMiALRr 395 (424)
T KOG0652|consen 369 LARSTDDFNGAQCKAVCVEAGMIALRR 395 (424)
T ss_pred HhhcccccCchhheeeehhhhHHHHhc
Confidence 999999999999999999999888875
No 84
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.51 E-value=4.4e-13 Score=150.54 Aligned_cols=212 Identities=23% Similarity=0.384 Sum_probs=143.9
Q ss_pred CCCcccccCcHHHHHH---HHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecC
Q 000914 920 GVTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMS 993 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~---L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~---fi~v~~s 993 (1226)
..+++|++|++++..+ |+.++. +. ...+++|+||||||||+||+.|+.....+ ||.++..
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ie----------q~----~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIE----------QN----RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHH----------cC----CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 3567788887766533 344443 12 23589999999999999999999988655 7777754
Q ss_pred ccccccccchHHHHHHHHHHHHhc-----CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000914 994 SITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1068 (1226)
Q Consensus 994 ~L~s~~~Ge~e~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVI 1068 (1226)
. ...+.++.+|+.+++. ...|||||||+++ +...| ..|+-.+ +++.|++|
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----NksQQ-------D~fLP~V------E~G~I~lI 254 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----NKSQQ-------DTFLPHV------ENGDITLI 254 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----hhhhh-------hccccee------ccCceEEE
Confidence 3 2345789999988753 3589999999987 21111 2333222 34778999
Q ss_pred Eec--CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhc--------cc------CChhcHHHHHHHcCCCcHHH
Q 000914 1069 AAT--NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--------EL------ASDVDLEGIANMADGYSGSD 1132 (1226)
Q Consensus 1069 aTT--N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~--------~l------~~dvdl~~LA~~TeGySgsD 1132 (1226)
++| |+.+.|..++++|+ +++.+.....+.-..||.+.+.-. ++ .++--++.|+..++|-....
T Consensus 255 GATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 887 77789999999999 788888889999999888855411 11 13445788999999988877
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000914 1133 LKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1194 (1226)
Q Consensus 1133 L~~L~~~Aa~~aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~ 1194 (1226)
|..|--.+.+...|. +..+..+|+.+|++++++.-...+
T Consensus 334 LN~Lems~~m~~tr~-----------------------g~~~~~~lSidDvke~lq~s~~~Y 372 (554)
T KOG2028|consen 334 LNALEMSLSMFCTRS-----------------------GQSSRVLLSIDDVKEGLQRSHILY 372 (554)
T ss_pred HHHHHHHHHHHHhhc-----------------------CCcccceecHHHHHHHHhhcccee
Confidence 766532222222221 111334678888888887654333
No 85
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.50 E-value=2.9e-14 Score=169.50 Aligned_cols=214 Identities=22% Similarity=0.243 Sum_probs=150.5
Q ss_pred ccccccccccccchHHHHHHHHhhhhhcccccccc-ccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEec
Q 000914 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAK-YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1226)
Q Consensus 449 i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~-~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~ 527 (1226)
-.+||++...+ +..+..|.++.-..|.|+++.+ ++ + ...+.|||+|||| .++++||||+|+++++.++-++.
T Consensus 178 p~~~~~DIgGl--~~qi~~l~e~v~lpl~~p~~~~~~g--i-~~p~gVLL~GPPG--TGKT~LAraIA~el~~~fi~V~~ 250 (438)
T PTZ00361 178 PLESYADIGGL--EQQIQEIKEAVELPLTHPELYDDIG--I-KPPKGVILYGPPG--TGKTLLAKAVANETSATFLRVVG 250 (438)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHhhhhCHHHHHhcC--C-CCCcEEEEECCCC--CCHHHHHHHHHHhhCCCEEEEec
Confidence 45788888888 9999999999999999998753 33 3 2456899999999 89999999999999988877764
Q ss_pred cCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeeeE
Q 000914 528 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 607 (1226)
Q Consensus 528 ~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~ 607 (1226)
+.+.+.+.
T Consensus 251 seL~~k~~------------------------------------------------------------------------ 258 (438)
T PTZ00361 251 SELIQKYL------------------------------------------------------------------------ 258 (438)
T ss_pred chhhhhhc------------------------------------------------------------------------
Confidence 44322100
Q ss_pred ecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcC
Q 000914 608 VGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKD 687 (1226)
Q Consensus 608 ~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi~d 687 (1226)
| .....+..+|+.+.. ..|+||||||
T Consensus 259 -G--------------------------------------------------e~~~~vr~lF~~A~~---~~P~ILfIDE 284 (438)
T PTZ00361 259 -G--------------------------------------------------DGPKLVRELFRVAEE---NAPSIVFIDE 284 (438)
T ss_pred -c--------------------------------------------------hHHHHHHHHHHHHHh---CCCcEEeHHH
Confidence 0 011246677777765 7899999999
Q ss_pred hhhhhccC--------hhhHHHHHHHHhcC-----CCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCCC
Q 000914 688 IEKSLTGN--------NDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 754 (1226)
Q Consensus 688 ie~~l~~~--------~~~~~~l~~~L~~l-----~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~ 754 (1226)
+|.++..+ .+....+...|..+ .++|+||+++|+.+.
T Consensus 285 ID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~------------------------------ 334 (438)
T PTZ00361 285 IDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES------------------------------ 334 (438)
T ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH------------------------------
Confidence 99976421 22333333333333 348999999994332
Q ss_pred ccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCC-Ccccchhh
Q 000914 755 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESL 831 (1226)
Q Consensus 755 ~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l-~~~dL~~L 831 (1226)
++. +++| ||.+.++++.|+...|..|+.+|+. ...+ .+++++.+
T Consensus 335 LDp-------------------------------aLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~--k~~l~~dvdl~~l 381 (438)
T PTZ00361 335 LDP-------------------------------ALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS--KMTLAEDVDLEEF 381 (438)
T ss_pred hhH-------------------------------HhccCCeeEEEEEeCCCCHHHHHHHHHHHHh--cCCCCcCcCHHHH
Confidence 221 4443 4444555555555555556666643 2234 57799999
Q ss_pred hcccCCCCHHHHHHHHhhhhhcccccc
Q 000914 832 CIKDQTLTTEGVEKIVGWALSHHFMHC 858 (1226)
Q Consensus 832 a~~tkg~sgadI~~Lv~~A~s~al~r~ 858 (1226)
+..+.+|+|+||+.+|+.|...|+.+.
T Consensus 382 a~~t~g~sgAdI~~i~~eA~~~Alr~~ 408 (438)
T PTZ00361 382 IMAKDELSGADIKAICTEAGLLALRER 408 (438)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998743
No 86
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4e-13 Score=165.24 Aligned_cols=185 Identities=21% Similarity=0.241 Sum_probs=134.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|||||++|+.||+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 46899999999999999998762 2334568999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 987 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 987 -----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
+++++... ......++.++..+.. ....||||||+|.|. ....+.|+
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALL 140 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAML 140 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHH
Confidence 33333221 1122345556555432 234699999999982 12234444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..|+. ....++||.+||.++.|.+.+++|| ..|.|..++.++..++|+.++..+++. ++..+..|++.++|-.
T Consensus 141 KtLEE----PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm- 214 (830)
T PRK07003 141 KTLEE----PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM- 214 (830)
T ss_pred HHHHh----cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-
Confidence 44433 2356899999999999999999999 789999999999999999999887764 5667888999998864
Q ss_pred HHHHHHHHHHH
Q 000914 1131 SDLKNLCVTAA 1141 (1226)
Q Consensus 1131 sDL~~L~~~Aa 1141 (1226)
++..+++..+.
T Consensus 215 RdALsLLdQAi 225 (830)
T PRK07003 215 RDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 87
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.50 E-value=2e-13 Score=174.93 Aligned_cols=183 Identities=22% Similarity=0.362 Sum_probs=135.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 990 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v 990 (1226)
..+++++|.++..+.+.+.+.. +..+++||+||||||||++|+++|..+ +.+++.+
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3567899999987777776652 123579999999999999999999987 6788999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEE
Q 000914 991 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1067 (1226)
Q Consensus 991 ~~s~L~--s~~~Ge~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlV 1067 (1226)
++..+. ..+.|+.+..++.+|..+.+ ..+.||||||||.|.+.....+.....+ ++... + .++.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~-~lkp~---l------~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGN-MLKPA---L------ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHH-Hhcch---h------hcCCCeE
Confidence 888765 45778889999999987654 4689999999999987654433333222 22111 1 2367999
Q ss_pred EEecCCCC-----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-----ChhcHHHHHHHcCCC
Q 000914 1068 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1128 (1226)
Q Consensus 1068 IaTTN~p~-----~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-----~dvdl~~LA~~TeGy 1128 (1226)
||||+..+ .+|+++.|||. .|.+..|+.+++..|++.+..+.... .+..+...+.++++|
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 99998765 58999999995 68899999999999999887653221 344455555566555
No 88
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.50 E-value=3e-13 Score=173.10 Aligned_cols=185 Identities=22% Similarity=0.341 Sum_probs=141.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 990 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v 990 (1226)
..++.++|.++.++.+.+.+.. +..+++||+||||||||++|+++|... +.+++.+
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3567899999999999887752 234689999999999999999999886 4789999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000914 991 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1068 (1226)
Q Consensus 991 ~~s~L~--s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVI 1068 (1226)
++..+. ..|.|+.+..++.+|..+....+.||||||||.|++.....+..... .++... + .++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a-~lLkp~---l------~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA-NILKPA---L------ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH-HHhHHH---H------hCCCcEEE
Confidence 988776 46788899999999999988888999999999998765433322222 222111 1 23668999
Q ss_pred EecCCCC-----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh----ccc-CChhcHHHHHHHcCCCcH
Q 000914 1069 AATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----EEL-ASDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1069 aTTN~p~-----~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k----~~l-~~dvdl~~LA~~TeGySg 1130 (1226)
++|+..+ ..++++.+||. .|.+..|+.++...|++.+... ..+ .++..+..++.++.+|.+
T Consensus 312 gaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 9998653 57899999994 6899999999999999876543 222 356668888888888754
No 89
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.49 E-value=4.7e-13 Score=171.84 Aligned_cols=184 Identities=21% Similarity=0.360 Sum_probs=138.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 990 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v 990 (1226)
..++.++|.++..+.+.+.+.. +..+++||+||||+|||++|+++|..+ +.+++.+
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3567899999987777776652 223578999999999999999999886 6778888
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEE
Q 000914 991 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1067 (1226)
Q Consensus 991 ~~s~L~--s~~~Ge~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlV 1067 (1226)
+...+. ..+.|+.+..++.+|..+.+. .+.||||||||.|++.....+..... +.|...+ .+..+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----~~Lk~~l------~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAG----NMLKPAL------ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHH----HHhchhh------hcCceEE
Confidence 887765 457788899999999988764 58999999999998644332222222 2222111 2367999
Q ss_pred EEecCCC-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-----ChhcHHHHHHHcCCCc
Q 000914 1068 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGYS 1129 (1226)
Q Consensus 1068 IaTTN~p-----~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-----~dvdl~~LA~~TeGyS 1129 (1226)
||+|+.. ..+|+++.|||. .|.++.|+.+++..||+.+..+.... .+..+..++.++.+|.
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 9999875 468999999994 68999999999999999887764322 4556777888887774
No 90
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=9.6e-13 Score=164.54 Aligned_cols=185 Identities=22% Similarity=0.242 Sum_probs=132.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 987 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~f------------ 987 (1226)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|+.+++.-
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 46899999999999999888762 22345679999999999999999999997641
Q ss_pred ------------EEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 988 ------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 988 ------------i~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
+.++... ...-..++.+...+.. ....|+||||+|.| + ...++.|+
T Consensus 79 C~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----T-------~eAqNALL 140 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----S-------RSSFNALL 140 (944)
T ss_pred HHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----C-------HHHHHHHH
Confidence 1111110 0112335555544432 23469999999998 2 23445555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..|.. .+..+++|++|+.+..|.+.+++|+ .++.|..++.++..++|+.++..+++. ++..+..|+..+.|. .
T Consensus 141 KtLEE----PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd-~ 214 (944)
T PRK14949 141 KTLEE----PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGS-M 214 (944)
T ss_pred HHHhc----cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 55543 2356778888888888999999999 789999999999999999988876544 556688899988874 5
Q ss_pred HHHHHHHHHHH
Q 000914 1131 SDLKNLCVTAA 1141 (1226)
Q Consensus 1131 sDL~~L~~~Aa 1141 (1226)
+++.++|..+.
T Consensus 215 R~ALnLLdQal 225 (944)
T PRK14949 215 RDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHH
Confidence 56666666544
No 91
>CHL00176 ftsH cell division protein; Validated
Probab=99.48 E-value=6.8e-14 Score=173.22 Aligned_cols=219 Identities=19% Similarity=0.270 Sum_probs=152.1
Q ss_pred ccCCCcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeE
Q 000914 443 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1226)
Q Consensus 443 vv~~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~l 522 (1226)
+....+..++|+++..+ +..|..|.+.+. .|++++. |..-=....+.|||+|||| +++++||||||++.++++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~-~lk~~~~--~~~~g~~~p~gVLL~GPpG--TGKT~LAralA~e~~~p~ 244 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVS-FLKKPER--FTAVGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAEVPF 244 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHH-HHhCHHH--HhhccCCCCceEEEECCCC--CCHHHHHHHHHHHhCCCe
Confidence 33566788999999999 999999988876 4787765 3222234567899999999 999999999999999988
Q ss_pred EEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCC
Q 000914 523 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 602 (1226)
Q Consensus 523 L~~D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 602 (1226)
+.++.+.+..... |
T Consensus 245 i~is~s~f~~~~~------------------------------------------------------------------g 258 (638)
T CHL00176 245 FSISGSEFVEMFV------------------------------------------------------------------G 258 (638)
T ss_pred eeccHHHHHHHhh------------------------------------------------------------------h
Confidence 7766433211000 0
Q ss_pred CeeeEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeE
Q 000914 603 DRVKFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLI 682 (1226)
Q Consensus 603 d~vk~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~I 682 (1226)
...-.++.+|+.+.. ..|+|
T Consensus 259 ---------------------------------------------------------~~~~~vr~lF~~A~~---~~P~I 278 (638)
T CHL00176 259 ---------------------------------------------------------VGAARVRDLFKKAKE---NSPCI 278 (638)
T ss_pred ---------------------------------------------------------hhHHHHHHHHHHHhc---CCCcE
Confidence 000134556666544 78999
Q ss_pred EEEcChhhhhcc--------ChhhHHHHHHH---HhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcc
Q 000914 683 VFVKDIEKSLTG--------NNDAYGALKSK---LENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDL 749 (1226)
Q Consensus 683 lfi~die~~l~~--------~~~~~~~l~~~---L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~ 749 (1226)
|||||+|.+... +.+.-..+... ++.+. .+|+|||++|+
T Consensus 279 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~---------------------------- 330 (638)
T CHL00176 279 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNR---------------------------- 330 (638)
T ss_pred EEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCc----------------------------
Confidence 999999996531 23322333333 33332 38999999993
Q ss_pred cCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCC-Ccc
Q 000914 750 AFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCV 826 (1226)
Q Consensus 750 ~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l-~~~ 826 (1226)
|+.+++ +++| ||.+++.+++|+...|..|++.|.. ...+ ++.
T Consensus 331 --~~~LD~-------------------------------ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~--~~~~~~d~ 375 (638)
T CHL00176 331 --VDILDA-------------------------------ALLRPGRFDRQITVSLPDREGRLDILKVHAR--NKKLSPDV 375 (638)
T ss_pred --hHhhhh-------------------------------hhhccccCceEEEECCCCHHHHHHHHHHHHh--hcccchhH
Confidence 333332 5555 6666777777777777777777633 2333 677
Q ss_pred cchhhhcccCCCCHHHHHHHHhhhhhccccc
Q 000914 827 DLESLCIKDQTLTTEGVEKIVGWALSHHFMH 857 (1226)
Q Consensus 827 dL~~La~~tkg~sgadI~~Lv~~A~s~al~r 857 (1226)
++..||..+.||+++||+.+|+.|+..+..+
T Consensus 376 ~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 376 SLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999998877643
No 92
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.8e-14 Score=169.37 Aligned_cols=217 Identities=22% Similarity=0.348 Sum_probs=168.0
Q ss_pred CCcccccccccccccchHHHHHHHHhhhhhccccc-cccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEE
Q 000914 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1226)
Q Consensus 446 ~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~-~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~ 524 (1226)
...+.|+|.+.-.- |..|.-|.+-+- .||.+. |.+.+. -..+.+||.|||| ..+++||||.|-+-++++.-
T Consensus 142 ~~~~~v~F~DVAG~--dEakeel~EiVd-fLk~p~ky~~lGa---kiPkGvlLvGpPG--TGKTLLAkAvAgEA~VPFf~ 213 (596)
T COG0465 142 EDQVKVTFADVAGV--DEAKEELSELVD-FLKNPKKYQALGA---KIPKGVLLVGPPG--TGKTLLAKAVAGEAGVPFFS 213 (596)
T ss_pred ccccCcChhhhcCc--HHHHHHHHHHHH-HHhCchhhHhccc---ccccceeEecCCC--CCcHHHHHHHhcccCCCcee
Confidence 44789999997777 999999999886 788764 444454 5678999999999 89999999999999998765
Q ss_pred EeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCe
Q 000914 525 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 604 (1226)
Q Consensus 525 ~D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 604 (1226)
+-.+++--
T Consensus 214 iSGS~FVe------------------------------------------------------------------------ 221 (596)
T COG0465 214 ISGSDFVE------------------------------------------------------------------------ 221 (596)
T ss_pred ccchhhhh------------------------------------------------------------------------
Confidence 54333210
Q ss_pred eeEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEE
Q 000914 605 VKFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVF 684 (1226)
Q Consensus 605 vk~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilf 684 (1226)
-|||- |. --+..||+=+.+ +.|+|||
T Consensus 222 -mfVGv---------GA-----------------------------------------sRVRdLF~qAkk---~aP~IIF 247 (596)
T COG0465 222 -MFVGV---------GA-----------------------------------------SRVRDLFEQAKK---NAPCIIF 247 (596)
T ss_pred -hhcCC---------Cc-----------------------------------------HHHHHHHHHhhc---cCCCeEE
Confidence 01110 00 024456666655 8999999
Q ss_pred EcChhhhhcc---------C---hhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhccc
Q 000914 685 VKDIEKSLTG---------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLA 750 (1226)
Q Consensus 685 i~die~~l~~---------~---~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~ 750 (1226)
||+||. +++ | .+..+.+...++.+. .+||||+++|
T Consensus 248 IDEiDA-vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTN------------------------------ 296 (596)
T COG0465 248 IDEIDA-VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATN------------------------------ 296 (596)
T ss_pred Eehhhh-cccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCC------------------------------
Confidence 999999 552 2 245566666666665 3899999999
Q ss_pred CCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCC-Cccc
Q 000914 751 FPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVD 827 (1226)
Q Consensus 751 ~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l-~~~d 827 (1226)
+||-+|. |||| ||++|+-.++||+++|..|+++| ++...+ ++++
T Consensus 297 RpdVlD~-------------------------------ALlRpgRFDRqI~V~~PDi~gRe~IlkvH--~~~~~l~~~Vd 343 (596)
T COG0465 297 RPDVLDP-------------------------------ALLRPGRFDRQILVELPDIKGREQILKVH--AKNKPLAEDVD 343 (596)
T ss_pred CcccchH-------------------------------hhcCCCCcceeeecCCcchhhHHHHHHHH--hhcCCCCCcCC
Confidence 5555554 9999 99999999999999999999999 555455 7899
Q ss_pred chhhhcccCCCCHHHHHHHHhhhhhcccccccC
Q 000914 828 LESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 860 (1226)
Q Consensus 828 L~~La~~tkg~sgadI~~Lv~~A~s~al~r~~~ 860 (1226)
+..+|..|.||+||+++.++.+|+.+|..+...
T Consensus 344 l~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 344 LKKIARGTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred HHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 999999999999999999999999999886543
No 93
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.9e-13 Score=147.21 Aligned_cols=217 Identities=25% Similarity=0.336 Sum_probs=161.1
Q ss_pred CCCcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEE
Q 000914 445 GPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1226)
Q Consensus 445 ~~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~ 524 (1226)
+-++-+||+-+.... +-.|+-..+|+-.+|.|.++.+.. . -...+++||+|||| ++++|||||.|||-.|.++-
T Consensus 146 ~~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qi-g-idpprgvllygppg--~gktml~kava~~t~a~fir 219 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQI-G-IDPPRGVLLYGPPG--TGKTMLAKAVANHTTAAFIR 219 (408)
T ss_pred CCCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHh-C-CCCCcceEEeCCCC--CcHHHHHHHHhhccchheee
Confidence 346678999999999 999999999999999999996543 2 34568999999999 99999999999999999886
Q ss_pred EeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCe
Q 000914 525 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 604 (1226)
Q Consensus 525 ~D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 604 (1226)
+-.+.|--
T Consensus 220 vvgsefvq------------------------------------------------------------------------ 227 (408)
T KOG0727|consen 220 VVGSEFVQ------------------------------------------------------------------------ 227 (408)
T ss_pred eccHHHHH------------------------------------------------------------------------
Confidence 65432200
Q ss_pred eeEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEE
Q 000914 605 VKFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVF 684 (1226)
Q Consensus 605 vk~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilf 684 (1226)
||.|- | -..+..+|.++.+ ..|.|||
T Consensus 228 -kylge-------------------------------g-------------------prmvrdvfrlake---napsiif 253 (408)
T KOG0727|consen 228 -KYLGE-------------------------------G-------------------PRMVRDVFRLAKE---NAPSIIF 253 (408)
T ss_pred -HHhcc-------------------------------C-------------------cHHHHHHHHHHhc---cCCcEEE
Confidence 11110 0 0145667777777 8999999
Q ss_pred EcChhhhhcc--------ChhhHHHHHHHHhcCCC-----CEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccC
Q 000914 685 VKDIEKSLTG--------NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAF 751 (1226)
Q Consensus 685 i~die~~l~~--------~~~~~~~l~~~L~~l~g-----~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~ 751 (1226)
||+||.+-.. ..+.-..+-+.|..+.| ||-||.++|+.|. +|+
T Consensus 254 ideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt----------------------ldp-- 309 (408)
T KOG0727|consen 254 IDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT----------------------LDP-- 309 (408)
T ss_pred eehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc----------------------cCH--
Confidence 9999996442 23333444455555544 9999999996655 333
Q ss_pred CCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCC-Ccccc
Q 000914 752 PDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDL 828 (1226)
Q Consensus 752 pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l-~~~dL 828 (1226)
|+|| |+++.+|+++|+-..+.-+..- .-..-.+ +++||
T Consensus 310 -------------------------------------allrpgrldrkiefplpdrrqkrlvf~t--itskm~ls~~vdl 350 (408)
T KOG0727|consen 310 -------------------------------------ALLRPGRLDRKIEFPLPDRRQKRLVFST--ITSKMNLSDEVDL 350 (408)
T ss_pred -------------------------------------hhcCCccccccccCCCCchhhhhhhHHh--hhhcccCCcccCH
Confidence 7888 8888899988886554433332 2233344 78999
Q ss_pred hhhhcccCCCCHHHHHHHHhhhhhcccc
Q 000914 829 ESLCIKDQTLTTEGVEKIVGWALSHHFM 856 (1226)
Q Consensus 829 ~~La~~tkg~sgadI~~Lv~~A~s~al~ 856 (1226)
+.+.....-.+||+|.++|.+|-.+|..
T Consensus 351 e~~v~rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 351 EDLVARPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred HHHhcCccccchhhHHHHHHHHhHHHHH
Confidence 9999999999999999999999988875
No 94
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.47 E-value=2.2e-12 Score=153.46 Aligned_cols=182 Identities=24% Similarity=0.416 Sum_probs=128.9
Q ss_pred CCCcccccCcHHHHHH---HHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 000914 920 GVTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~---L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~ 996 (1226)
..+|++++|++++... |.+.+.. ....++||+||||||||+||++||+.++..|+.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-
Confidence 3578999999998666 7776642 123479999999999999999999999999999987532
Q ss_pred cccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEec-
Q 000914 997 SKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT- 1071 (1226)
Q Consensus 997 s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTT- 1071 (1226)
....++.++..+.. ....||||||||.+. ...+ +.|+..++. ..+++|++|
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----~~~q-------~~LL~~le~------~~iilI~att 128 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----KAQQ-------DALLPHVED------GTITLIGATT 128 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----HHHH-------HHHHHHhhc------CcEEEEEeCC
Confidence 22345556655532 246899999999882 1112 223333322 346666654
Q ss_pred -CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhc--cc--CChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000914 1072 -NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--EL--ASDVDLEGIANMADGYSGSDLKNLCVTAAH 1142 (1226)
Q Consensus 1072 -N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~--~l--~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~ 1142 (1226)
|....+++++++|| .++.+..++.++...+++..+... .+ .++..++.|+..+.| ..+.+.++++.++.
T Consensus 129 ~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~ 202 (413)
T PRK13342 129 ENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAAL 202 (413)
T ss_pred CChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44568999999999 789999999999999999987652 11 345557788888865 45566666666643
No 95
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.4e-13 Score=159.42 Aligned_cols=174 Identities=22% Similarity=0.352 Sum_probs=126.7
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-------
Q 000914 924 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT------- 996 (1226)
Q Consensus 924 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~------- 996 (1226)
+|-.|++++|+++.+++.--..+ + .-..+-+.|+||||+|||++++.||..++..|++++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr------g--s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR------G--SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc------c--cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 35789999999999998631111 1 11223488999999999999999999999999999875432
Q ss_pred --cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHH-----hhhhhccCCcccCCCcEEEEE
Q 000914 997 --SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLA 1069 (1226)
Q Consensus 997 --s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~-----~Ll~~ldgl~~k~~~~VlVIa 1069 (1226)
..|+|.+...+-+.+....-..| +++|||||.+. +........++..+++ .|+.+.-.++- +-.+|++||
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG-~g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFic 559 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG-SGHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFIC 559 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC-CCCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEEE
Confidence 23777777777777776666555 88999999996 2222222334443332 23333323322 236899999
Q ss_pred ecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 000914 1070 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1109 (1226)
Q Consensus 1070 TTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k 1109 (1226)
|+|..+.+++.++.|. .+|.+.=...++..+|.+.+|-.
T Consensus 560 TAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 560 TANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred eccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhh
Confidence 9999999999999999 78999999999999999988754
No 96
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.6e-12 Score=156.41 Aligned_cols=184 Identities=18% Similarity=0.221 Sum_probs=129.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 985 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~-------------- 985 (1226)
..+|++++|++.+++.|...+.. .+.+.++||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 46899999999999998887752 224467999999999999999999999865
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 986 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 986 ----------~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
.++.++++. ..+-..++.+...+... ...||||||+|.|. ....+.|+
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LL 138 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALL 138 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHH
Confidence 345554432 11123455555554422 24699999999882 11233444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+++|++|+.+..+.+++++|+ ..+.+..++.++...+++..+...++. ++..+..|+..+.|-..
T Consensus 139 k~LE~----p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR 213 (472)
T PRK14962 139 KTLEE----PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLR 213 (472)
T ss_pred HHHHh----CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 44433 2245777777777789999999999 589999999999999999998776543 56668888888876444
Q ss_pred HHHHHHHHHH
Q 000914 1131 SDLKNLCVTA 1140 (1226)
Q Consensus 1131 sDL~~L~~~A 1140 (1226)
++.++++.+
T Consensus 214 -~aln~Le~l 222 (472)
T PRK14962 214 -DALTMLEQV 222 (472)
T ss_pred -HHHHHHHHH
Confidence 444444443
No 97
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.4e-12 Score=159.28 Aligned_cols=186 Identities=23% Similarity=0.243 Sum_probs=135.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 985 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~-------------- 985 (1226)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 46899999999999999988762 234567999999999999999999999865
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 986 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 986 ----------~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
.++.++.+.- ..-..++.+...+.. ....|+||||+|.|- . ...+.|+
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----~-------~A~NALL 139 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----T-------HSFNALL 139 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----H-------HHHHHHH
Confidence 2344443321 122345555554432 234699999999882 1 1234444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+.+|.+|+.+..+...+++|+ .++.|..++.++..+.++.++.++++. ++..+..|+..+.| +.
T Consensus 140 KtLEE----PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEE----PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhc----CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44443 2245777778888888999999999 789999999999999999999887654 56668889988877 56
Q ss_pred HHHHHHHHHHHh
Q 000914 1131 SDLKNLCVTAAH 1142 (1226)
Q Consensus 1131 sDL~~L~~~Aa~ 1142 (1226)
+++.+++..+..
T Consensus 214 RdALnLLDQaIa 225 (702)
T PRK14960 214 RDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHH
Confidence 666676665543
No 98
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.6e-12 Score=152.26 Aligned_cols=186 Identities=21% Similarity=0.257 Sum_probs=132.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
+.+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999887762 2234568999999999999999999998642
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 987 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 987 -----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
++.++.+. ...-..++.+...+... ...|+||||+|.+- ....+.++
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLL 140 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALL 140 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHH
Confidence 22222111 01223455665554322 23599999999882 11233444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l-~~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+.+|.+|+.++.+.+++.+|+ ..+.+..|+.++..++++..+...+. .++..+..++..+.| +.
T Consensus 141 k~lEe----~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEE----PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhc----CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44443 2345677777787888999999998 68999999999999999999888764 356677888888877 56
Q ss_pred HHHHHHHHHHHh
Q 000914 1131 SDLKNLCVTAAH 1142 (1226)
Q Consensus 1131 sDL~~L~~~Aa~ 1142 (1226)
+++.++++.++.
T Consensus 215 R~al~~l~~~~~ 226 (363)
T PRK14961 215 RDALNLLEHAIN 226 (363)
T ss_pred HHHHHHHHHHHH
Confidence 677777776643
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.5e-12 Score=160.51 Aligned_cols=185 Identities=23% Similarity=0.270 Sum_probs=133.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 46899999999999999988763 2234568999999999999999999998763
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 987 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 987 -----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
|+.++... ...-..++.+...+.. ....|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALL 140 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALL 140 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHH
Confidence 23333221 0112335555444332 234699999999882 22344555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..+.. .+..+++|.+|+.+..|.+.+++|+ ..+.|..++.++-...|+.++..+++. ++..+..|+..++|. .
T Consensus 141 KtLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs-~ 214 (647)
T PRK07994 141 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS-M 214 (647)
T ss_pred HHHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 55543 3356788888888899999999998 789999999999999999998876654 556678899888875 4
Q ss_pred HHHHHHHHHHH
Q 000914 1131 SDLKNLCVTAA 1141 (1226)
Q Consensus 1131 sDL~~L~~~Aa 1141 (1226)
++..+++..|.
T Consensus 215 R~Al~lldqai 225 (647)
T PRK07994 215 RDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.5e-12 Score=158.04 Aligned_cols=187 Identities=17% Similarity=0.179 Sum_probs=136.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 46899999999999999998863 2334568999999999999999999999653
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 987 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 987 -----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
++.++.+. ...-..++.+...+... .-.|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLL 140 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALL 140 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHH
Confidence 44454332 11223455555544321 23599999999882 12234455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-...++.++.++++. ++..+..|+..+.| +.
T Consensus 141 k~LEe----pp~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEE----PPSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhc----cCCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 55443 2345777778888888998999998 788999999999999999999887654 55667888888876 67
Q ss_pred HHHHHHHHHHHhh
Q 000914 1131 SDLKNLCVTAAHC 1143 (1226)
Q Consensus 1131 sDL~~L~~~Aa~~ 1143 (1226)
+++.++++.+...
T Consensus 215 R~al~lLdq~ia~ 227 (509)
T PRK14958 215 RDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHHhc
Confidence 7888888766543
No 101
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.2e-14 Score=151.37 Aligned_cols=214 Identities=21% Similarity=0.250 Sum_probs=163.7
Q ss_pred cccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEec
Q 000914 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1226)
Q Consensus 448 ~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~ 527 (1226)
+-+||+.+...- .....-|.+.+-.+|-|++- |..-=-...++|||+|||| ..++.+|+|.|+.-+|.++-+=.
T Consensus 171 kpdvty~dvggc--keqieklrevve~pll~per--fv~lgidppkgvllygppg--tgktl~aravanrtdacfirvig 244 (435)
T KOG0729|consen 171 KPDVTYSDVGGC--KEQIEKLREVVELPLLHPER--FVNLGIDPPKGVLLYGPPG--TGKTLCARAVANRTDACFIRVIG 244 (435)
T ss_pred CCCcccccccch--HHHHHHHHHHHhccccCHHH--HhhcCCCCCCceEEeCCCC--CchhHHHHHHhcccCceEEeehh
Confidence 346788888777 77778889999999999875 4322234568999999999 79999999999999999875532
Q ss_pred cCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeeeE
Q 000914 528 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 607 (1226)
Q Consensus 528 ~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~ 607 (1226)
|.| . -||
T Consensus 245 sel------------------------------------------------------v-------------------qky 251 (435)
T KOG0729|consen 245 SEL------------------------------------------------------V-------------------QKY 251 (435)
T ss_pred HHH------------------------------------------------------H-------------------HHH
Confidence 111 0 034
Q ss_pred ecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcC
Q 000914 608 VGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKD 687 (1226)
Q Consensus 608 ~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi~d 687 (1226)
+|- .-..+.+||+++.. +..+|||||+
T Consensus 252 vge--------------------------------------------------garmvrelf~mart---kkaciiffde 278 (435)
T KOG0729|consen 252 VGE--------------------------------------------------GARMVRELFEMART---KKACIIFFDE 278 (435)
T ss_pred hhh--------------------------------------------------hHHHHHHHHHHhcc---cceEEEEeec
Confidence 431 12378899999988 8999999999
Q ss_pred hhhhhc--------cChhhHHHHH---HHHhcC--CCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCCC
Q 000914 688 IEKSLT--------GNNDAYGALK---SKLENL--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 754 (1226)
Q Consensus 688 ie~~l~--------~~~~~~~~l~---~~L~~l--~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~ 754 (1226)
||.+=+ +.++.-...- ..|+.+ .||+-|+-++| +||.
T Consensus 279 idaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatn------------------------------rpdt 328 (435)
T KOG0729|consen 279 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATN------------------------------RPDT 328 (435)
T ss_pred cccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecC------------------------------CCCC
Confidence 999422 2344333333 334444 46999999999 6776
Q ss_pred ccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHH-hhhCCCCcccchhh
Q 000914 755 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESL 831 (1226)
Q Consensus 755 ~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~-L~~n~l~~~dL~~L 831 (1226)
+|. |||| |.++.+|+.||++.+|.+|++||++ |.-. -+...+-|
T Consensus 329 ldp-------------------------------allrpgrldrkvef~lpdlegrt~i~kihaksmsve--rdir~ell 375 (435)
T KOG0729|consen 329 LDP-------------------------------ALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE--RDIRFELL 375 (435)
T ss_pred cCH-------------------------------hhcCCcccccceeccCCcccccceeEEEeccccccc--cchhHHHH
Confidence 765 9998 9999999999999999999999987 5422 23455679
Q ss_pred hcccCCCCHHHHHHHHhhhhhcccc
Q 000914 832 CIKDQTLTTEGVEKIVGWALSHHFM 856 (1226)
Q Consensus 832 a~~tkg~sgadI~~Lv~~A~s~al~ 856 (1226)
|.++.+-+||+|+.+|++|--+|+.
T Consensus 376 arlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 376 ARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred HhhCCCCcchHHHHHHHHhhHHHHH
Confidence 9999999999999999999999986
No 102
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.45 E-value=2.7e-12 Score=154.35 Aligned_cols=168 Identities=19% Similarity=0.290 Sum_probs=114.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1034 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1034 (1226)
++++||||+|+|||+|++++++++ +..++++++.++...+...........|....+ .+.+|+||||+.+.+++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 566888998877654433221111122333222 46899999999885332
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhh
Q 000914 1035 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1109 (1226)
Q Consensus 1035 ~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~l~lPd~eeR~eILk~lL~k 1109 (1226)
..++.+..+++.+... ...+||++...|.. +++.+++||. .++.+..|+.++|..|++..+..
T Consensus 228 ---~~~~~l~~~~n~l~~~---------~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ---RTQEEFFHTFNALHEA---------GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ---HHHHHHHHHHHHHHHC---------CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1233334444444321 23456666666544 6788999995 47899999999999999999987
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000914 1110 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1141 (1226)
Q Consensus 1110 ~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa 1141 (1226)
.++. ++..++.||....| +.++|..++....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHH
Confidence 5543 56668888888876 5566666655544
No 103
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.44 E-value=2.3e-12 Score=152.69 Aligned_cols=226 Identities=23% Similarity=0.319 Sum_probs=137.4
Q ss_pred Cccc-ccCcHHHHHHHHHHHHcccCChhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-
Q 000914 922 TFDD-IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS- 997 (1226)
Q Consensus 922 tfdd-I~Gle~vk~~L~e~V~~pL~~pelf~k--~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s- 997 (1226)
.+++ |+|++.+++.|...+...+.+-..... .....+..++||+||||||||++|+++|..++.+|+.+++..+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 4443 899999999997777543332211100 011224468999999999999999999999999999999988753
Q ss_pred ccccch-HHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCch-HH-HHHHHHHhhhhhccCCc---------ccC
Q 000914 998 KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGE-HE-AMRKMKNEFMVNWDGLR---------TKD 1061 (1226)
Q Consensus 998 ~~~Ge~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~-~e-~l~~vl~~Ll~~ldgl~---------~k~ 1061 (1226)
.|+|.. +..+..++..+ .+..++||||||||.+.....++.. .. ....+.+.|+..|++-. ...
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~ 227 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 227 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence 567764 34445554432 3456799999999999755322210 00 00123344444444321 111
Q ss_pred CCcEEEEEecCCCC----------------------------------------------------CCcHHHHhhccccc
Q 000914 1062 KERVLVLAATNRPF----------------------------------------------------DLDEAVVRRLPRRL 1089 (1226)
Q Consensus 1062 ~~~VlVIaTTN~p~----------------------------------------------------~Ld~aLlrRF~~~I 1089 (1226)
....++|.|+|..+ -+.|+|+.|++.++
T Consensus 228 ~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv 307 (412)
T PRK05342 228 QQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVA 307 (412)
T ss_pred CCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeee
Confidence 23455666655411 13567777888888
Q ss_pred cCCCCCHHHHHHHHHH----HHhh-------ccc---CChhcHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHH
Q 000914 1090 MVNLPDAPNREKIIRV----ILAK-------EEL---ASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 1147 (1226)
Q Consensus 1090 ~l~lPd~eeR~eILk~----lL~k-------~~l---~~dvdl~~LA~~T--eGySgsDL~~L~~~Aa~~aire 1147 (1226)
.|...+.++..+|+.. ++++ .++ .++..++.|++.. .++-.+.|+.+++..+...+.+
T Consensus 308 ~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 308 TLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 9999999998888872 3322 111 1344456666642 3455566666666655544444
No 104
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.43 E-value=2.2e-12 Score=150.89 Aligned_cols=178 Identities=24% Similarity=0.377 Sum_probs=127.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-ccccc-c
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFG-E 1002 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~-s~~~G-e 1002 (1226)
.|+|++++++.+...+.....+..+.....-..++++|||+||||||||++|++||..++.+|+.+++..+. ..|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 389999999999877764323222211111123458999999999999999999999999999999998776 36777 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 000914 1003 GEKYVKAVFSLAS------------------------------------------------------------------- 1015 (1226)
Q Consensus 1003 ~e~~I~~lF~~A~------------------------------------------------------------------- 1015 (1226)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5666666665550
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 000914 1016 ------------------------------------------------------------------------KIAPSVVF 1023 (1226)
Q Consensus 1016 ------------------------------------------------------------------------k~~PsILf 1023 (1226)
..+.+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 12457999
Q ss_pred EccccccccCCCCCchHHHH-HHHHHhhhhhccCCcc------cCCCcEEEEEec----CCCCCCcHHHHhhccccccCC
Q 000914 1024 VDEVDSMLGRRENPGEHEAM-RKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVN 1092 (1226)
Q Consensus 1024 IDEID~L~~~r~~~~~~e~l-~~vl~~Ll~~ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~l~ 1092 (1226)
|||||.++.+..+.+ .... .-+.+.|+..+.|-.. -+..++++||+. ..|.+|-|.|.-||+.++.+.
T Consensus 253 iDEiDKIa~~~~~~~-~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 331 (441)
T TIGR00390 253 IDEIDKIAKKGESSG-ADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQ 331 (441)
T ss_pred EEchhhhcccCCCCC-CCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 999999986542211 1111 2255667766666321 123679999886 357778899999999999999
Q ss_pred CCCHHHHHHHH
Q 000914 1093 LPDAPNREKII 1103 (1226)
Q Consensus 1093 lPd~eeR~eIL 1103 (1226)
.++.++...||
T Consensus 332 ~L~~edL~rIL 342 (441)
T TIGR00390 332 ALTTDDFERIL 342 (441)
T ss_pred CCCHHHHHHHh
Confidence 99999988887
No 105
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.43 E-value=5.2e-12 Score=149.86 Aligned_cols=169 Identities=20% Similarity=0.288 Sum_probs=113.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1034 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1034 (1226)
+.++||||+|+|||+|++++++++ +..++++++.++...+...........|....+ ...+|+||||+.+.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 569999999999999999999887 577889998776544322111101112222222 35799999999885332
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhhccc--cccCCCCCHHHHHHHHHHHHhh
Q 000914 1035 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAK 1109 (1226)
Q Consensus 1035 ~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~--~I~l~lPd~eeR~eILk~lL~k 1109 (1226)
..++.+..+++.+.. ....+||+++..|. .+++.+++||.. .+.++.|+.++|..|++..+..
T Consensus 216 ---~~~~~l~~~~n~~~~---------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 ---RTQEEFFHTFNALHE---------NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---HHHHHHHHHHHHHHH---------CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 123333444443331 12345565555554 356888999964 7899999999999999999987
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000914 1110 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1142 (1226)
Q Consensus 1110 ~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa~ 1142 (1226)
.++. ++..+..||....+ +.++|..++.....
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLLA 316 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 6654 66678889988775 56667666655443
No 106
>PRK04195 replication factor C large subunit; Provisional
Probab=99.43 E-value=2.7e-12 Score=155.56 Aligned_cols=187 Identities=25% Similarity=0.367 Sum_probs=132.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 999 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 999 (1226)
..+|++++|.+++++.|..++.... + ..+++++||+||||+|||++|+++|++++++++.+++++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 4679999999999999999886322 1 234678999999999999999999999999999999876432
Q ss_pred ccchHHHHHHHHHHHHh------cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC
Q 000914 1000 FGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1073 (1226)
Q Consensus 1000 ~Ge~e~~I~~lF~~A~k------~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~ 1073 (1226)
...+..+...+.. ..+.||+|||+|.|.+... ... ++.++..+.. .+..+|+++|.
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~~----~~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RGG----ARAILELIKK------AKQPIILTAND 139 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hhH----HHHHHHHHHc------CCCCEEEeccC
Confidence 1233333333322 2467999999999853211 111 1222222221 22456667888
Q ss_pred CCCCcH-HHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHH
Q 000914 1074 PFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLC 1137 (1226)
Q Consensus 1074 p~~Ld~-aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~ 1137 (1226)
+..+.. .+++|+ ..|.|+.|+..+...+++.++...++. ++..+..|+..+.|.....|..|.
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq 204 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQ 204 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 888877 555565 789999999999999999999887654 566788899988775555554443
No 107
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.42 E-value=1.1e-11 Score=144.23 Aligned_cols=202 Identities=18% Similarity=0.232 Sum_probs=128.6
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEecCc
Q 000914 924 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 994 (1226)
Q Consensus 924 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg---------~~fi~v~~s~ 994 (1226)
+++.|.++.++.|...+...+. + ..+.+++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4789999999999887763221 1 2235799999999999999999998762 5788899865
Q ss_pred cccc----------cc--c--------chHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhh
Q 000914 995 ITSK----------WF--G--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1053 (1226)
Q Consensus 995 L~s~----------~~--G--------e~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ 1053 (1226)
..+. .. + .....+..++..... ..+.||+|||+|.|.... +. ++..++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~~----~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----DD----LLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----cH----HHHhHhcc
Confidence 3221 10 1 012233445544432 346799999999996211 11 33333322
Q ss_pred ccCCcccCCCcEEEEEecCCCC---CCcHHHHhhcc-ccccCCCCCHHHHHHHHHHHHhh---cccCChhcHHHHHH---
Q 000914 1054 WDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIAN--- 1123 (1226)
Q Consensus 1054 ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~-~~I~l~lPd~eeR~eILk~lL~k---~~l~~dvdl~~LA~--- 1123 (1226)
+.. ......++.+|+++|.++ .+++.+.+||. ..+.|++++.++..+|++..+.. ....++..+..++.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111235789999998875 57788888885 57899999999999999998863 12223333444443
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhH
Q 000914 1124 MADGYSGSDLKNLCVTAAHCPIR 1146 (1226)
Q Consensus 1124 ~TeGySgsDL~~L~~~Aa~~air 1146 (1226)
.+.|.. +.+.++|..|+..+..
T Consensus 235 ~~~Gd~-R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 235 QEHGDA-RKAIDLLRVAGEIAER 256 (365)
T ss_pred HhcCCH-HHHHHHHHHHHHHHHH
Confidence 444653 4445677777765544
No 108
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=4e-12 Score=153.89 Aligned_cols=186 Identities=20% Similarity=0.256 Sum_probs=136.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++++|++.+.+.|...+.. .+.+.++||+||+|||||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 46899999999999999887652 2345689999999999999999999998652
Q ss_pred ---------------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHH
Q 000914 987 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMK 1047 (1226)
Q Consensus 987 ---------------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl 1047 (1226)
++.++... ......++.+++.+... ...|+||||+|.|. ...+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 12222111 12345677777766533 24699999999882 1223
Q ss_pred HhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcC
Q 000914 1048 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1126 (1226)
Q Consensus 1048 ~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~Te 1126 (1226)
+.|+..++. .+..+++|.+|+.++.+.+++++|+ .++.+..++.++...+++..+.++++. ++..+..|+..++
T Consensus 146 naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 444444443 2356777877888889999999999 689999999999999999999987754 5566888999888
Q ss_pred CCcHHHHHHHHHHHHh
Q 000914 1127 GYSGSDLKNLCVTAAH 1142 (1226)
Q Consensus 1127 GySgsDL~~L~~~Aa~ 1142 (1226)
| +.+++.++++.+..
T Consensus 221 G-slR~al~~Ldkai~ 235 (507)
T PRK06645 221 G-SARDAVSILDQAAS 235 (507)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 7 56677666666643
No 109
>PLN03025 replication factor C subunit; Provisional
Probab=99.42 E-value=4.1e-12 Score=146.18 Aligned_cols=181 Identities=24% Similarity=0.249 Sum_probs=125.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 994 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg-----~~fi~v~~s~ 994 (1226)
..+|++++|.+++.+.|+.++.. . ...++||+||||||||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 56899999999999999887652 1 123699999999999999999999982 2366666654
Q ss_pred cccccccchHHHHHHHHHH-HHh------cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEE
Q 000914 995 ITSKWFGEGEKYVKAVFSL-ASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1067 (1226)
Q Consensus 995 L~s~~~Ge~e~~I~~lF~~-A~k------~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlV 1067 (1226)
..+ ...++..... +.. ....||+|||+|.|. ...+..+.++++ .. .....+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~aL~~~lE-------~~----~~~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQALRRTME-------IY----SNTTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHHHHHHHHh-------cc----cCCceE
Confidence 321 1123332221 111 235799999999983 223333333332 11 133567
Q ss_pred EEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHH
Q 000914 1068 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1138 (1226)
Q Consensus 1068 IaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~ 1138 (1226)
|.++|....+.+++++|+ ..+.|..|+.++....++..+.++++. ++..+..|+..+.|-. +.+.+.++
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDl-R~aln~Lq 202 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDM-RQALNNLQ 202 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 778888888999999998 689999999999999999999887654 5667888888877643 44444444
No 110
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.1e-12 Score=152.78 Aligned_cols=186 Identities=21% Similarity=0.237 Sum_probs=138.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 985 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~-------------- 985 (1226)
..+|+|++|++.+.+.|...+.. .+.+.++||+||+|+|||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 46899999999999999887752 334578999999999999999999997643
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 986 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 986 ----------~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
.+++++++.- .+-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLL 137 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALL 137 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHH
Confidence 3455554321 1234566666665432 34699999999882 12344555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++.++.++++. ++..+..|+..+.| +.
T Consensus 138 K~LEe----Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEE----PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhC----CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55554 2355778888888888999999999 679999999999999999999887654 66678888988876 66
Q ss_pred HHHHHHHHHHHh
Q 000914 1131 SDLKNLCVTAAH 1142 (1226)
Q Consensus 1131 sDL~~L~~~Aa~ 1142 (1226)
+++.++++.+..
T Consensus 212 R~alslLdqli~ 223 (491)
T PRK14964 212 RNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHHH
Confidence 677777766654
No 111
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=5.2e-12 Score=155.50 Aligned_cols=186 Identities=23% Similarity=0.279 Sum_probs=136.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 46899999999999999998763 2345679999999999999999999998653
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 987 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 987 -----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
++.++.+. ......++.++..+.. ....||||||+|.|- ....+.|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALL 140 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAML 140 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHH
Confidence 12222211 1223456666665432 234699999999872 12234455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+.+|.+|+.+..+...+++|| ..+.|..++.++...+|+.++.++++. ++..+..|++.+.| +.
T Consensus 141 KtLEE----Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEE----PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHh----CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 54443 2355778888888899999999999 678899999999999999999987764 55668888888875 57
Q ss_pred HHHHHHHHHHHh
Q 000914 1131 SDLKNLCVTAAH 1142 (1226)
Q Consensus 1131 sDL~~L~~~Aa~ 1142 (1226)
+++.++++.+..
T Consensus 215 RdAlnLLDqaia 226 (709)
T PRK08691 215 RDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 112
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=5.1e-12 Score=149.09 Aligned_cols=192 Identities=16% Similarity=0.222 Sum_probs=126.6
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------------
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI------------- 988 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi------------- 988 (1226)
.|++|+|++.+++.|++.+......+..+ + .+.++++||+||+|+|||++|+++|+.+.+.-.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58899999999999999998644322222 1 124578999999999999999999998755310
Q ss_pred --EEecCcccc---ccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcc
Q 000914 989 --NISMSSITS---KWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1059 (1226)
Q Consensus 989 --~v~~s~L~s---~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~ 1059 (1226)
.-+.+++.- ......-..++.++..+... ...|+||||+|.|. . ...+.|+..++.-
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----~-------~aanaLLk~LEep-- 144 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----E-------RAANALLKAVEEP-- 144 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----H-------HHHHHHHHHhhcC--
Confidence 000011100 00011234577888777643 23599999999982 1 1224455555432
Q ss_pred cCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHH
Q 000914 1060 KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCV 1138 (1226)
Q Consensus 1060 k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~~ 1138 (1226)
+.++++|.+|+.++.+.+++++|+ ..+.|+.|+.++..+++.. +.++ +......++..+.|..+..+..+..
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~-~~~~a~~la~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGV-DPETARRAARASQGHIGRARRLATD 216 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCC-CHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 233455555555899999999999 7899999999887776653 2233 3455678899999988877665543
No 113
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.40 E-value=3.4e-12 Score=149.28 Aligned_cols=178 Identities=22% Similarity=0.354 Sum_probs=127.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cccc-c
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 1002 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s-~~~G-e 1002 (1226)
.|+|++++++.+..++....++..+.........+.+|||+||||+|||+||++||+.++.+|+.+++..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999998877543332222111111123578999999999999999999999999999999987764 6777 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 000914 1003 GEKYVKAVFSLAS------------------------------------------------------------------- 1015 (1226)
Q Consensus 1003 ~e~~I~~lF~~A~------------------------------------------------------------------- 1015 (1226)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4666666666661
Q ss_pred ---------------------------------------------------------------------h--cCCeEEEE
Q 000914 1016 ---------------------------------------------------------------------K--IAPSVVFV 1024 (1226)
Q Consensus 1016 ---------------------------------------------------------------------k--~~PsILfI 1024 (1226)
. .+-+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 14579999
Q ss_pred ccccccccCCCCCchHHHH-HHHHHhhhhhccCCcc------cCCCcEEEEEec----CCCCCCcHHHHhhccccccCCC
Q 000914 1025 DEVDSMLGRRENPGEHEAM-RKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNL 1093 (1226)
Q Consensus 1025 DEID~L~~~r~~~~~~e~l-~~vl~~Ll~~ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~l~l 1093 (1226)
||||.++.+..+. ..... .-+.+.|+..+.|-.. -+..++++||+. ..|.+|-|.|.-||+.++.+..
T Consensus 256 DEiDKIa~~~~~~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 334 (443)
T PRK05201 256 DEIDKIAARGGSS-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDA 334 (443)
T ss_pred EcchhhcccCCCC-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 9999998654321 11222 2356667777766321 123679999886 4567788999999999999999
Q ss_pred CCHHHHHHHH
Q 000914 1094 PDAPNREKII 1103 (1226)
Q Consensus 1094 Pd~eeR~eIL 1103 (1226)
++.++...||
T Consensus 335 L~~~dL~~IL 344 (443)
T PRK05201 335 LTEEDFVRIL 344 (443)
T ss_pred CCHHHHHHHh
Confidence 9999988887
No 114
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=7.4e-12 Score=154.22 Aligned_cols=187 Identities=20% Similarity=0.242 Sum_probs=134.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++++|++.+.+.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 46899999999999999998763 2234568999999999999999999998652
Q ss_pred ----------------EEEEecCccccccccchHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchHHHHHHH
Q 000914 987 ----------------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKM 1046 (1226)
Q Consensus 987 ----------------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~l~~v 1046 (1226)
++.++... ...-..++.+...+.... -.|++|||+|.|. ...
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a 140 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTA 140 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHH
Confidence 22232211 112234566665543222 2599999999982 122
Q ss_pred HHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc
Q 000914 1047 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1125 (1226)
Q Consensus 1047 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~T 1125 (1226)
.+.|+..++. .+..+.+|.+|+.+..+...+++|+ ..+.|..++.++..+.++.++.++++. ++..+..|+..+
T Consensus 141 ~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc----CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4445555443 2356777777778888888999998 789999999999999999998887665 455688889988
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 000914 1126 DGYSGSDLKNLCVTAAHC 1143 (1226)
Q Consensus 1126 eGySgsDL~~L~~~Aa~~ 1143 (1226)
.| +.+++.+++..+...
T Consensus 216 ~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAF 232 (618)
T ss_pred CC-CHHHHHHHHHHHHHh
Confidence 87 666777776655533
No 115
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.4e-12 Score=153.45 Aligned_cols=172 Identities=23% Similarity=0.325 Sum_probs=128.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--------
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 996 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~-------- 996 (1226)
|-.|++++|+++.+++.-..... .+ ...=++|+||||+|||+|++.||+.++..|++++...+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~------~~--kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK------KL--KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc------cC--CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 56899999999999986422211 11 112489999999999999999999999999999975532
Q ss_pred -cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHH-----hhhhhccCCcccCCCcEEEEEe
Q 000914 997 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLAA 1070 (1226)
Q Consensus 997 -s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~-----~Ll~~ldgl~~k~~~~VlVIaT 1070 (1226)
..|+|.....+-+-...|....| +++|||||.|... .......++..+++ .|..+.-.+.- +-.+|++|+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEee
Confidence 23788887778888888877776 8899999999532 22233344444442 23322222221 2367999999
Q ss_pred cCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHh
Q 000914 1071 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1108 (1226)
Q Consensus 1071 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~ 1108 (1226)
+|..+.++..++.|. .+|.+.-.+.++..+|.+.+|-
T Consensus 473 ANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 473 ANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred cCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 999999999999999 7999999999999999998764
No 116
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.39 E-value=6.8e-13 Score=165.59 Aligned_cols=219 Identities=18% Similarity=0.278 Sum_probs=154.0
Q ss_pred cccCCCcccccccccccccchHHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCC
Q 000914 442 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (1226)
Q Consensus 442 ~vv~~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a 520 (1226)
....+..+.++|+++-.+ +..+.-|...+.. ++.++.. ... ....+.|||+||+| ..+++|||+||++.++
T Consensus 140 ~~~~~~~~~~~~~di~g~--~~~~~~l~~i~~~-~~~~~~~~~~~---~~~~~gill~G~~G--~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 140 RMLTEDQIKTTFADVAGC--DEAKEEVAELVEY-LREPSRFQKLG---GKIPKGVLMVGPPG--TGKTLLAKAIAGEAKV 211 (644)
T ss_pred cccCchhhhCcHHHHcCH--HHHHHHHHHHHHH-hhCHHHHHhcC---CCCCCcEEEECCCC--CCHHHHHHHHHHHcCC
Confidence 344557788899998777 8888888777654 4544332 221 23446799999999 9999999999999999
Q ss_pred eEEEEeccCCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCccccc
Q 000914 521 RLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFK 600 (1226)
Q Consensus 521 ~lL~~D~~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (1226)
+++.++.+.+......
T Consensus 212 ~f~~is~~~~~~~~~g---------------------------------------------------------------- 227 (644)
T PRK10733 212 PFFTISGSDFVEMFVG---------------------------------------------------------------- 227 (644)
T ss_pred CEEEEehHHhHHhhhc----------------------------------------------------------------
Confidence 9988875443210000
Q ss_pred CCCeeeEecccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCC
Q 000914 601 KGDRVKFVGNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSP 680 (1226)
Q Consensus 601 ~gd~vk~~g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P 680 (1226)
...-.+..+|+.+.. ..|
T Consensus 228 -----------------------------------------------------------~~~~~~~~~f~~a~~---~~P 245 (644)
T PRK10733 228 -----------------------------------------------------------VGASRVRDMFEQAKK---AAP 245 (644)
T ss_pred -----------------------------------------------------------ccHHHHHHHHHHHHh---cCC
Confidence 000033445555544 689
Q ss_pred eEEEEcChhhhhcc--------Ch---hhHHHHHHHHhcCCC--CEEEEEeccCCCCccccCCCCCceeeccCcchhhhh
Q 000914 681 LIVFVKDIEKSLTG--------NN---DAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALL 747 (1226)
Q Consensus 681 ~Ilfi~die~~l~~--------~~---~~~~~l~~~L~~l~g--~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~ 747 (1226)
+||||||+|.+..+ +. +..+.+-..|+.+.+ +|||||++|
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN--------------------------- 298 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN--------------------------- 298 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecC---------------------------
Confidence 99999999996432 11 233444444555543 799999999
Q ss_pred cccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCC-C
Q 000914 748 DLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-D 824 (1226)
Q Consensus 748 d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l-~ 824 (1226)
+|+.+|. +++| ||.+++++++|+...|..|++.| +.+.++ .
T Consensus 299 ---~p~~lD~-------------------------------Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~--~~~~~l~~ 342 (644)
T PRK10733 299 ---RPDVLDP-------------------------------ALLRPGRFDRQVVVGLPDVRGREQILKVH--MRRVPLAP 342 (644)
T ss_pred ---ChhhcCH-------------------------------HHhCCcccceEEEcCCCCHHHHHHHHHHH--hhcCCCCC
Confidence 4555553 6666 77777778888877777887776 444455 6
Q ss_pred cccchhhhcccCCCCHHHHHHHHhhhhhccccc
Q 000914 825 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 857 (1226)
Q Consensus 825 ~~dL~~La~~tkg~sgadI~~Lv~~A~s~al~r 857 (1226)
+.++..||..|.||+|+||+.+|+.|+..|...
T Consensus 343 ~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 343 DIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred cCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 778899999999999999999999999998753
No 117
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=1.6e-11 Score=144.66 Aligned_cols=202 Identities=16% Similarity=0.203 Sum_probs=129.7
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccc
Q 000914 923 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS 997 (1226)
Q Consensus 923 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v~~s~L~s 997 (1226)
.+.+.|.++..+.|...+...+. ...+.+++|+||||||||++++.+++++ ++.++.++|....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 35688999999998887753111 1123579999999999999999999887 57889999864321
Q ss_pred ----------cccc--------chHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCc
Q 000914 998 ----------KWFG--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1058 (1226)
Q Consensus 998 ----------~~~G--------e~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~ 1058 (1226)
...+ .....+..++..... ..+.||+|||+|.+.... . . .++..++..+....
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-~---~----~~l~~l~~~~~~~~ 170 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-G---N----DVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-C---c----hHHHHHHHhhhccC
Confidence 1111 112233344443333 345799999999986211 1 1 23334443333321
Q ss_pred ccCCCcEEEEEecCCC---CCCcHHHHhhcc-ccccCCCCCHHHHHHHHHHHHhhc---ccCChhcHHHHHHHcCCCc--
Q 000914 1059 TKDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGYS-- 1129 (1226)
Q Consensus 1059 ~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~l~lPd~eeR~eILk~lL~k~---~l~~dvdl~~LA~~TeGyS-- 1129 (1226)
..++.+|+++|.. +.+++.+.+||. ..+.++.++.++..+|++..+... ...++..++.+++.+.+.+
T Consensus 171 ---~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 ---GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred ---CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 2368888888765 357788888774 568999999999999999987642 1234555777887774322
Q ss_pred HHHHHHHHHHHHhhhh
Q 000914 1130 GSDLKNLCVTAAHCPI 1145 (1226)
Q Consensus 1130 gsDL~~L~~~Aa~~ai 1145 (1226)
.+.+..+|..|+..+.
T Consensus 248 ~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 248 ARVAIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444566666665443
No 118
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.39 E-value=8e-13 Score=154.69 Aligned_cols=74 Identities=24% Similarity=0.249 Sum_probs=60.8
Q ss_pred CcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEe
Q 000914 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1226)
Q Consensus 447 ~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D 526 (1226)
+..+++|++++.. +..+..|.++...+++++++.+.. .+ ...++|||+|||| .++++||||+|++.++.++.+.
T Consensus 115 ~~p~~~~~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~-g~-~~p~gvLL~GppG--tGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 115 ERPNVSYEDIGGL--EEQIREIREAVELPLKHPELFEEV-GI-EPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred cCCCCCHHHhCCh--HHHHHHHHHHHHHHhcCHHHHHhc-CC-CCCceEEEECCCC--CCHHHHHHHHHHhCCCCEEecc
Confidence 4467899999888 999999999999999998875421 12 2456799999999 9999999999999998876553
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1e-11 Score=151.76 Aligned_cols=185 Identities=22% Similarity=0.268 Sum_probs=133.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999988762 2344668999999999999999999999652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 987 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 987 -----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
++.++.+. ......++.+...+... ...|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLL 140 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAML 140 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHH
Confidence 22222211 11234566666665432 23599999999882 12344555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-...+...+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhC----CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55544 2356777777777888888899998 789999999999999999988877654 45557888888776 45
Q ss_pred HHHHHHHHHHH
Q 000914 1131 SDLKNLCVTAA 1141 (1226)
Q Consensus 1131 sDL~~L~~~Aa 1141 (1226)
+++.++++.+.
T Consensus 215 r~al~lldqai 225 (527)
T PRK14969 215 RDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 120
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=1.4e-11 Score=147.50 Aligned_cols=215 Identities=16% Similarity=0.234 Sum_probs=135.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCC
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 1035 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 1035 (1226)
.++++||||+|+|||+|++++++++ +..++++++..+...+.......-...|.... ....+|+||||+.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 3579999999999999999999886 68888888766544322111111112343333 246899999999884322
Q ss_pred CCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC---CCCcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhc
Q 000914 1036 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP---FDLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKE 1110 (1226)
Q Consensus 1036 ~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~--~~I~l~lPd~eeR~eILk~lL~k~ 1110 (1226)
..++.+..+++.+... ...+|++++..| ..+++.+++||. ..+.+..|+.++|..||+..+...
T Consensus 219 --~~qeelf~l~N~l~~~---------~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 219 --ATQEEFFHTFNSLHTE---------GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred --hhHHHHHHHHHHHHHC---------CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 2344555555555421 234555554444 356789999995 688889999999999999998886
Q ss_pred ccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHH
Q 000914 1111 ELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC-PIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHE 1188 (1226)
Q Consensus 1111 ~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~-aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~ 1188 (1226)
++. ++..++.|+....+ ..++|...++..+.. +..++ ..+++++++++.++.
T Consensus 288 ~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~-------------------------~~~~i~~~~~~~~l~ 341 (445)
T PRK12422 288 SIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL-------------------------SHQLLYVDDIKALLH 341 (445)
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh-------------------------hCCCCCHHHHHHHHH
Confidence 654 55567778887765 344555544444321 22211 114578888888887
Q ss_pred Hhcccc-cccccchhhhHHHHHHhc
Q 000914 1189 QVCASV-SSESTNMNELLQWNELYG 1212 (1226)
Q Consensus 1189 ~v~pS~-s~e~~~~~~~v~W~DigG 1212 (1226)
.+.... ....+...-...|.+.||
T Consensus 342 ~~~~~~~~~~~t~~~I~~~Va~~~~ 366 (445)
T PRK12422 342 DVLEAAESVRLTPSKIIRAVAQYYG 366 (445)
T ss_pred HhhhcccCCCCCHHHHHHHHHHHhC
Confidence 653221 112333445567777777
No 121
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.1e-11 Score=157.20 Aligned_cols=184 Identities=18% Similarity=0.165 Sum_probs=128.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|||||++|+.||+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 46899999999999999998762 2334568999999999999999999999652
Q ss_pred -------------EEEEecCccccccccchHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCchHHHHHHHHHh
Q 000914 987 -------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1049 (1226)
Q Consensus 987 -------------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~ 1049 (1226)
|+.++.... ..-..++.+...+ ......|+||||+|.|. ....+.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~Na 139 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNA 139 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHH
Confidence 222322110 0122334433322 22344699999999982 123344
Q ss_pred hhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCC
Q 000914 1050 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1128 (1226)
Q Consensus 1050 Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGy 1128 (1226)
|+..|+.. ...++||++|+.++.|.+.|++|+ .++.|..++.++..++|+.++.++++. ++..+..|+..+.|
T Consensus 140 LLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 55555442 356788888888888999999998 789999999999999999999887664 44556777777766
Q ss_pred cHHHHHHHHHHH
Q 000914 1129 SGSDLKNLCVTA 1140 (1226)
Q Consensus 1129 SgsDL~~L~~~A 1140 (1226)
+.+++.++++..
T Consensus 214 dlR~Al~eLEKL 225 (824)
T PRK07764 214 SVRDSLSVLDQL 225 (824)
T ss_pred CHHHHHHHHHHH
Confidence 445555555443
No 122
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.6e-11 Score=149.64 Aligned_cols=185 Identities=23% Similarity=0.275 Sum_probs=129.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 985 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~-------------- 985 (1226)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 46899999999999999887762 233456999999999999999999998864
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 986 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 986 ----------~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
.++.++... .. +-..++.+...+.. ....|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dlieidaas----~~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLL 140 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAAS----RT--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALL 140 (546)
T ss_pred HHHHhcCCCCceEEeeccc----cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHH
Confidence 233333211 01 12234455444432 234699999999882 12334444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+.+|++|+.+..+.+.+++|+ ..+.|..++.++....++..+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 141 KTLEE----PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred HHHhc----CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44443 2245667777777888888899999 789999999999999999988887654 55667888888865 45
Q ss_pred HHHHHHHHHHH
Q 000914 1131 SDLKNLCVTAA 1141 (1226)
Q Consensus 1131 sDL~~L~~~Aa 1141 (1226)
+++.++++.+.
T Consensus 215 R~alnlLek~i 225 (546)
T PRK14957 215 RDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHH
Confidence 56666666544
No 123
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.36 E-value=1.9e-11 Score=140.47 Aligned_cols=188 Identities=21% Similarity=0.247 Sum_probs=123.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 994 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg-----~~fi~v~~s~ 994 (1226)
..+|++++|.+.+++.|..++.. . ...++||+||||||||++|+++++++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS----------P----NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC----------C----CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 45799999999999999887752 1 123799999999999999999999883 3567888766
Q ss_pred ccccc-------------ccc-------hHHHHHHHHHHHHh-----cCCeEEEEccccccccCCCCCchHHHHHHHHHh
Q 000914 995 ITSKW-------------FGE-------GEKYVKAVFSLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1049 (1226)
Q Consensus 995 L~s~~-------------~Ge-------~e~~I~~lF~~A~k-----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~ 1049 (1226)
+.... .+. ....++.+...... ..+.+|+|||+|.+. ...+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~~~~~~------- 144 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----EDAQQA------- 144 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----HHHHHH-------
Confidence 53221 000 01223333323222 224699999999872 111222
Q ss_pred hhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCC
Q 000914 1050 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1128 (1226)
Q Consensus 1050 Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGy 1128 (1226)
|...++... ....+|.+++.+..+.+.+.+|+ ..+.+..|+.++...+++..+.+.++. ++..+..|+..+.|
T Consensus 145 L~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 145 LRRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred HHHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 222222211 22445556666667778888897 678999999999999999998887654 56678888888754
Q ss_pred cHHHHHHHHHH
Q 000914 1129 SGSDLKNLCVT 1139 (1226)
Q Consensus 1129 SgsDL~~L~~~ 1139 (1226)
+.+++.+.++.
T Consensus 219 dlr~l~~~l~~ 229 (337)
T PRK12402 219 DLRKAILTLQT 229 (337)
T ss_pred CHHHHHHHHHH
Confidence 44444444443
No 124
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.7e-11 Score=150.83 Aligned_cols=184 Identities=25% Similarity=0.331 Sum_probs=133.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 985 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~-------------- 985 (1226)
..+|++++|++.+.+.|+..+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 46899999999999999998763 234467999999999999999999998853
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 986 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 986 ----------~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
+++.++.+. ..+-..++.+...+... ...|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 334444321 12234566666665432 23699999999882 12344555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+++|.+|+.++.+.+.+++|+ ..+.|..|+.++...+++.++.+.++. ++..+..|+..+.| ..
T Consensus 141 KtLEe----pp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEE----PPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcC----CCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55544 2355777777778899999999998 578899999999999999999887654 55667788888877 55
Q ss_pred HHHHHHHHHH
Q 000914 1131 SDLKNLCVTA 1140 (1226)
Q Consensus 1131 sDL~~L~~~A 1140 (1226)
+++.++++.+
T Consensus 215 R~al~~Ldq~ 224 (559)
T PRK05563 215 RDALSILDQA 224 (559)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 125
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.6e-11 Score=148.96 Aligned_cols=185 Identities=22% Similarity=0.276 Sum_probs=130.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++++|++.+++.|..++.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 46899999999999999998863 2234557999999999999999999998531
Q ss_pred ----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhh
Q 000914 987 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1052 (1226)
Q Consensus 987 ----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~ 1052 (1226)
++.++... ...-..++.+...+.. ..+.||||||+|.+. ...++.|+.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 33444321 1122345555443332 245799999999772 123344444
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHH
Q 000914 1053 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1131 (1226)
Q Consensus 1053 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgs 1131 (1226)
.+.. ....+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++.++.+.++. ++..+..|+..+.|. .+
T Consensus 139 ~LEe----p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gd-lR 212 (504)
T PRK14963 139 TLEE----PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGA-MR 212 (504)
T ss_pred HHHh----CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 4443 2245777778888899999999998 589999999999999999999887654 556678888888774 44
Q ss_pred HHHHHHHHHH
Q 000914 1132 DLKNLCVTAA 1141 (1226)
Q Consensus 1132 DL~~L~~~Aa 1141 (1226)
++.++++.+.
T Consensus 213 ~aln~Lekl~ 222 (504)
T PRK14963 213 DAESLLERLL 222 (504)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 126
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.36 E-value=1.9e-12 Score=148.43 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=141.6
Q ss_pred ccccc--ccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEeccC
Q 000914 452 SFESF--PYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1226)
Q Consensus 452 sfd~f--pyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~~ 529 (1226)
+|+|. .||+...--. -+.+|+-+.-+.- .+ -.....+||+|||| +++++||||+|+++|+.++.++...
T Consensus 113 ~f~~~~g~~~~~p~f~d----k~~~hi~kn~l~~--~~-ik~PlgllL~GPPG--cGKTllAraiA~elg~~~i~vsa~e 183 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMD----KVAVHIAKNFLAL--PN-IKVPLILGIWGGKG--QGKSFQCELVFKKMGIEPIVMSAGE 183 (413)
T ss_pred chhhhcCccccCHHHHH----HHHHHHHhhhhhc--cC-CCCCeEEEeeCCCC--CCHHHHHHHHHHHcCCCeEEEEHHH
Confidence 35554 5887664332 3345655543311 11 25567788999999 9999999999999999999999988
Q ss_pred CCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeeeEec
Q 000914 530 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 609 (1226)
Q Consensus 530 ~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~g 609 (1226)
|++.+..|+|
T Consensus 184 L~sk~vGEsE---------------------------------------------------------------------- 193 (413)
T PLN00020 184 LESENAGEPG---------------------------------------------------------------------- 193 (413)
T ss_pred hhcCcCCcHH----------------------------------------------------------------------
Confidence 8876665442
Q ss_pred ccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhcc--CCCCeEEEEcC
Q 000914 610 NVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNES--KSSPLIVFVKD 687 (1226)
Q Consensus 610 ~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es--~~~P~Ilfi~d 687 (1226)
-+|.++|..+...+ +.+|+||||||
T Consensus 194 -----------------------------------------------------k~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 194 -----------------------------------------------------KLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 25666777776543 66899999999
Q ss_pred hhhhhccC--------hhhH-HHHHHHHhcC--------------CCCEEEEEeccCCCCccccCCCCCceeeccCcchh
Q 000914 688 IEKSLTGN--------NDAY-GALKSKLENL--------------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQT 744 (1226)
Q Consensus 688 ie~~l~~~--------~~~~-~~l~~~L~~l--------------~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~ 744 (1226)
||..+.+. +++. ..|...++.+ ..+|+||+++|
T Consensus 221 IDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTN------------------------ 276 (413)
T PLN00020 221 LDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGN------------------------ 276 (413)
T ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCC------------------------
Confidence 99966531 2332 4555555532 35799999999
Q ss_pred hhhcccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCC
Q 000914 745 ALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNG 822 (1226)
Q Consensus 745 ~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~L~~n~ 822 (1226)
.|+.++. +++| ||++.+ .+|+...|.+|+++|++ ..+
T Consensus 277 ------rpd~LDp-------------------------------ALlRpGRfDk~i--~lPd~e~R~eIL~~~~r--~~~ 315 (413)
T PLN00020 277 ------DFSTLYA-------------------------------PLIRDGRMEKFY--WAPTREDRIGVVHGIFR--DDG 315 (413)
T ss_pred ------CcccCCH-------------------------------hHcCCCCCCcee--CCCCHHHHHHHHHHHhc--cCC
Confidence 5555664 8888 888865 48999999999999844 457
Q ss_pred CCcccchhhhcccCC----CCHHHHHHHHhhhhhc
Q 000914 823 LDCVDLESLCIKDQT----LTTEGVEKIVGWALSH 853 (1226)
Q Consensus 823 l~~~dL~~La~~tkg----~sgadI~~Lv~~A~s~ 853 (1226)
++..++..|+....| |.||.-+.+.-.++..
T Consensus 316 l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~ 350 (413)
T PLN00020 316 VSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRK 350 (413)
T ss_pred CCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHH
Confidence 777888888887765 4555544444444433
No 127
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.35 E-value=1.8e-11 Score=134.34 Aligned_cols=190 Identities=24% Similarity=0.341 Sum_probs=136.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 996 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~ 996 (1226)
.+.++++.|++.+++.|.+.... |.+ ..|.+++||+|++|||||++++++..+. |..+|.|...+|.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~---G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQ---GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHc---CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 46889999999999999887654 333 3478899999999999999999999877 7788888765543
Q ss_pred cccccchHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000914 997 SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 997 s~~~Ge~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
.+..++...+. -.+-|||+|++- | ...+. -...|...++|--...+.+|+|.||+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d~-----~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--F----EEGDT-----EYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--C----CCCcH-----HHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 34455555443 345799999974 2 11111 124555667776666778999999999743
Q ss_pred CCcH-----------------------HHHhhccccccCCCCCHHHHHHHHHHHHhhcccCCh-hcHH----HHHHHcCC
Q 000914 1076 DLDE-----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDLE----GIANMADG 1127 (1226)
Q Consensus 1076 ~Ld~-----------------------aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~d-vdl~----~LA~~TeG 1127 (1226)
.+.+ ++..||+..+.|..|+.++-.+|++.++.+.++.-+ ..+. ..|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 2221 444599999999999999999999999988776533 2332 23344457
Q ss_pred CcHHHHHHHHHH
Q 000914 1128 YSGSDLKNLCVT 1139 (1226)
Q Consensus 1128 ySgsDL~~L~~~ 1139 (1226)
.||+--.+.+..
T Consensus 233 RSGRtA~QF~~~ 244 (249)
T PF05673_consen 233 RSGRTARQFIDD 244 (249)
T ss_pred CCHHHHHHHHHH
Confidence 788766666543
No 128
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.35 E-value=2.5e-11 Score=138.88 Aligned_cols=157 Identities=20% Similarity=0.249 Sum_probs=109.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 999 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~ 999 (1226)
..+|++++|.+++++.+...+.. .+.++.+||+||||+|||++|++++++++.+++.+++.+ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 46899999999999999988752 123356777999999999999999999999999999876 21
Q ss_pred ccchHHHHHHHHHHHH-hcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000914 1000 FGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1078 (1226)
Q Consensus 1000 ~Ge~e~~I~~lF~~A~-k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1078 (1226)
.......+..+..... ...+.||||||+|.+.. ...+.. +..+ ++.. ...+.+|++||.+..+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----~~~~~~----L~~~---le~~----~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----ADAQRH----LRSF---MEAY----SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----HHHHHH----HHHH---HHhc----CCCceEEEEcCChhhch
Confidence 1111111222111111 12468999999998721 111122 2222 2221 24568888999999999
Q ss_pred HHHHhhccccccCCCCCHHHHHHHHHHHHh
Q 000914 1079 EAVVRRLPRRLMVNLPDAPNREKIIRVILA 1108 (1226)
Q Consensus 1079 ~aLlrRF~~~I~l~lPd~eeR~eILk~lL~ 1108 (1226)
+++++|| ..+.++.|+.+++..+++.++.
T Consensus 146 ~~l~sR~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 146 EPLRSRC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred HHHHhhc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999 5789999999999888776544
No 129
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.35 E-value=2.3e-11 Score=152.82 Aligned_cols=182 Identities=21% Similarity=0.362 Sum_probs=125.1
Q ss_pred CCCcccccCcHHHHH---HHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 000914 920 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~---~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~ 996 (1226)
..+|++++|++.+.. .|++.+.. ....++||+||||||||++|++||+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 468999999999875 45555431 122479999999999999999999999999998887531
Q ss_pred cccccchHHHHHHHHHHHH-----hcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEec
Q 000914 997 SKWFGEGEKYVKAVFSLAS-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1071 (1226)
Q Consensus 997 s~~~Ge~e~~I~~lF~~A~-----k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTT 1071 (1226)
....++.++..+. .....||||||||.|. ...+.. |+..+. ...+++|++|
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----~~qQda-------LL~~lE------~g~IiLI~aT 144 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----KAQQDA-------LLPWVE------NGTITLIGAT 144 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----HHHHHH-------HHHHhc------CceEEEEEec
Confidence 1122333333331 1245799999999882 112222 222222 2456777665
Q ss_pred --CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh-------ccc-CChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000914 1072 --NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EEL-ASDVDLEGIANMADGYSGSDLKNLCVTAA 1141 (1226)
Q Consensus 1072 --N~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k-------~~l-~~dvdl~~LA~~TeGySgsDL~~L~~~Aa 1141 (1226)
|....+++++++|+ .++.++.++.+++..+++.++.. ..+ .++..++.|+....| ..+.+.++++.|.
T Consensus 145 Tenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 145 TENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33467889999997 67999999999999999999873 222 245567888888765 5677777777765
Q ss_pred h
Q 000914 1142 H 1142 (1226)
Q Consensus 1142 ~ 1142 (1226)
.
T Consensus 223 ~ 223 (725)
T PRK13341 223 E 223 (725)
T ss_pred H
Confidence 3
No 130
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.35 E-value=4.3e-11 Score=129.97 Aligned_cols=185 Identities=19% Similarity=0.236 Sum_probs=119.2
Q ss_pred CCccccc--CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc
Q 000914 921 VTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 995 (1226)
Q Consensus 921 ~tfddI~--Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L 995 (1226)
.+|+++. +.....+.+++.+. .....+++|+||+|||||++|+++++++ +.+++.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4667754 45667777776543 1234689999999999999999999887 578888998776
Q ss_pred ccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000914 996 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 996 ~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
.... ..++.... ...+|+|||+|.+.... ..+..+..+++.+. . ....+|++++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~~----~-----~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRVR----E-----AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHHH----H-----cCCeEEEECCCChH
Confidence 5321 22332222 24699999999883110 11333333333221 1 11234444443443
Q ss_pred CC--c-HHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000914 1076 DL--D-EAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1142 (1226)
Q Consensus 1076 ~L--d-~aLlrRF~--~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa~ 1142 (1226)
.+ . +.+.+||. ..+.++.|+.+++..+++.++.+..+. ++..+..|+.. -+.+.+++.++++.+..
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDR 207 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 33 2 77888874 678899999999999999887765443 55557778885 34577888888776553
No 131
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.35 E-value=2.2e-11 Score=141.13 Aligned_cols=186 Identities=26% Similarity=0.340 Sum_probs=132.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++++|++++++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999987752 2234679999999999999999999997432
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 987 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 987 -----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
++.++... ......++.++..+... ...||+|||+|.+. ....+.++
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHH
Confidence 33333221 11233466677666543 23599999999882 12334455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+++|.+|+.++.+.+++++|+ ..+.+..|+.++...+++.++.+.++. ++..+..|+..+.| +.
T Consensus 139 ~~le~----~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 139 KTLEE----PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred HHHhC----CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 55543 2245777778888888889999998 578999999999999999999887653 45667778888776 55
Q ss_pred HHHHHHHHHHHh
Q 000914 1131 SDLKNLCVTAAH 1142 (1226)
Q Consensus 1131 sDL~~L~~~Aa~ 1142 (1226)
+.+.+.++.+..
T Consensus 213 ~~a~~~lekl~~ 224 (355)
T TIGR02397 213 RDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHHh
Confidence 666666665544
No 132
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2e-11 Score=149.77 Aligned_cols=180 Identities=21% Similarity=0.257 Sum_probs=127.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++|+|++.+++.|..++.. .+-+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 46899999999999999998862 1224589999999999999999999999653
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 987 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 987 -----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
++.++...- ..-..++.+...+. .....||||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 333433210 11123333322222 2234799999999882 12334555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l-~~dvdl~~LA~~TeGySg 1130 (1226)
..++. ....+++|++|+.+..+...+++|+ .++.|..++.++...+|+..+.+.++ .++..+..|+..+.|...
T Consensus 141 k~LEE----P~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEE----PPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhc----cCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 55443 2245788888888888999999998 67899999999999999998887765 366678888988887544
Q ss_pred HHHHH
Q 000914 1131 SDLKN 1135 (1226)
Q Consensus 1131 sDL~~ 1135 (1226)
..|..
T Consensus 216 ~Al~l 220 (624)
T PRK14959 216 DSMSL 220 (624)
T ss_pred HHHHH
Confidence 44433
No 133
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.34 E-value=6.7e-11 Score=129.30 Aligned_cols=178 Identities=19% Similarity=0.227 Sum_probs=114.5
Q ss_pred CCCccccc--CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 000914 920 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 994 (1226)
Q Consensus 920 ~~tfddI~--Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~ 994 (1226)
..+|+++. +.+.+...++++... .....+++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 46788854 345555666554431 1233579999999999999999999876 67888888766
Q ss_pred cccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCc-EEEEEecCC
Q 000914 995 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 1073 (1226)
Q Consensus 995 L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~-VlVIaTTN~ 1073 (1226)
+... + .......+|+|||+|.+ +...+..+..+++.+. .... +++++++..
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l-----~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERL-----DDAQQIALFNLFNRVR---------AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhc-----CchHHHHHHHHHHHHH---------HcCCcEEEEeCCCC
Confidence 4321 1 11224579999999987 2223334444443321 1123 344444433
Q ss_pred C--CCCcHHHHhhc--cccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 000914 1074 P--FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1139 (1226)
Q Consensus 1074 p--~~Ld~aLlrRF--~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~ 1139 (1226)
+ ..+.+.+++|| ...+.++.|+.+++..+++.+.....+. ++..+..|+....| +.+++.++++.
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 3 24568888887 4688999999988999998887765543 55567777775544 56677666665
No 134
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.8e-12 Score=141.35 Aligned_cols=212 Identities=20% Similarity=0.209 Sum_probs=163.1
Q ss_pred cccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEeccC
Q 000914 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1226)
Q Consensus 450 ~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~~ 529 (1226)
++||++.... -...-.|.+..-+||++++++.-. ++ ......||+||+| .+++.||+|.|...|+.+|.+-++.
T Consensus 128 ~~s~~~~ggl--~~qirelre~ielpl~np~lf~rv-gI-k~Pkg~ll~GppG--tGKTlla~~Vaa~mg~nfl~v~ss~ 201 (388)
T KOG0651|consen 128 NISFENVGGL--FYQIRELREVIELPLTNPELFLRV-GI-KPPKGLLLYGPPG--TGKTLLARAVAATMGVNFLKVVSSA 201 (388)
T ss_pred ccCHHHhCCh--HHHHHHHHhheEeeccCchhcccc-CC-CCCceeEEeCCCC--CchhHHHHHHHHhcCCceEEeeHhh
Confidence 5678887664 334445778888999999995421 23 3467889999999 8999999999999999999988765
Q ss_pred CCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeeeEec
Q 000914 530 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 609 (1226)
Q Consensus 530 ~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~g 609 (1226)
|-.++-.|+
T Consensus 202 lv~kyiGEs----------------------------------------------------------------------- 210 (388)
T KOG0651|consen 202 LVDKYIGES----------------------------------------------------------------------- 210 (388)
T ss_pred hhhhhcccH-----------------------------------------------------------------------
Confidence 543322211
Q ss_pred ccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcChh
Q 000914 610 NVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIE 689 (1226)
Q Consensus 610 ~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi~die 689 (1226)
..+|.+-|.-+.. .+|+|||++|||
T Consensus 211 ----------------------------------------------------aRlIRemf~yA~~---~~pciifmdeiD 235 (388)
T KOG0651|consen 211 ----------------------------------------------------ARLIRDMFRYARE---VIPCIIFMDEID 235 (388)
T ss_pred ----------------------------------------------------HHHHHHHHHHHhh---hCceEEeehhhh
Confidence 1255666666655 899999999999
Q ss_pred hhhc--------cChhhHHHHHHHHhcCC-----CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCCCcc
Q 000914 690 KSLT--------GNNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFS 756 (1226)
Q Consensus 690 ~~l~--------~~~~~~~~l~~~L~~l~-----g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~ 756 (1226)
...+ .++++-..|.+.|+.+. ++|-||+++| .||.++
T Consensus 236 AigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatN------------------------------rpdtLd 285 (388)
T KOG0651|consen 236 AIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATN------------------------------RPDTLD 285 (388)
T ss_pred hhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecC------------------------------Cccccc
Confidence 9655 35667777777777775 4999999999 555566
Q ss_pred ccccccccchHHHHHHhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhcccchhHHHHH-hhhCCCCcccchhhhc
Q 000914 757 RLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCI 833 (1226)
Q Consensus 757 ~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rw~~qLe~dLpdlk~R~nIl~IhT~-L~~n~l~~~dL~~La~ 833 (1226)
. +||| |.++.+++++|++.+|..|++||.. +..++- .+-+.+..
T Consensus 286 p-------------------------------aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Ge--id~eaivK 332 (388)
T KOG0651|consen 286 P-------------------------------ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGE--IDDEAILK 332 (388)
T ss_pred h-------------------------------hhcCCccccceeccCCcchhhceeeEeecccccccccc--ccHHHHHH
Confidence 4 8888 9999999999999999999999987 555553 22456777
Q ss_pred ccCCCCHHHHHHHHhhhhhcccc
Q 000914 834 KDQTLTTEGVEKIVGWALSHHFM 856 (1226)
Q Consensus 834 ~tkg~sgadI~~Lv~~A~s~al~ 856 (1226)
...+|+|++++..|++|--+++.
T Consensus 333 ~~d~f~gad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 333 LVDGFNGADLRNVCTEAGMFAIP 355 (388)
T ss_pred HHhccChHHHhhhcccccccccc
Confidence 88899999999999999877754
No 135
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.33 E-value=1.7e-11 Score=136.51 Aligned_cols=185 Identities=24% Similarity=0.338 Sum_probs=131.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------cEEEEecC
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA------NFINISMS 993 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~------~fi~v~~s 993 (1226)
..+|+++.|++.+.+.|...+.. +-..++|||||||||||+.|+++|.++.. .+...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 56899999999999999998762 12248999999999999999999999965 23344555
Q ss_pred ccccccccchHHHHHHHHHHHH---------hcCC-eEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCC
Q 000914 994 SITSKWFGEGEKYVKAVFSLAS---------KIAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1063 (1226)
Q Consensus 994 ~L~s~~~Ge~e~~I~~lF~~A~---------k~~P-sILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~ 1063 (1226)
+..+..++ ...++. |.... -.+| -||+|||.|.|. ...+.+++++++.+ ..
T Consensus 98 derGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sdaq~aLrr~mE~~-----------s~ 158 (346)
T KOG0989|consen 98 DERGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SDAQAALRRTMEDF-----------SR 158 (346)
T ss_pred ccccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhh-----HHHHHHHHHHHhcc-----------cc
Confidence 44333221 111111 22111 1122 699999999983 33455555555432 25
Q ss_pred cEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHH
Q 000914 1064 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1138 (1226)
Q Consensus 1064 ~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~ 1138 (1226)
.+++|..||..+.|...+.+|+ ..+.|+....+.....|+.+..++++. ++..++.|+..++|--.+.+..|-.
T Consensus 159 ~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6889999999999999999999 567788888888888899999888776 5566888999888866555554433
No 136
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=3.2e-11 Score=148.11 Aligned_cols=184 Identities=18% Similarity=0.196 Sum_probs=128.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|||||++|+++|+.+.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 46899999999999999998862 2344568999999999999999999988642
Q ss_pred -------------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHh
Q 000914 987 -------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1049 (1226)
Q Consensus 987 -------------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~ 1049 (1226)
++.++.+.. .+-..++.+...+.. ....|+||||+|.|- ....+.
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHH
Confidence 222322110 112334444433322 233699999999882 123445
Q ss_pred hhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCC
Q 000914 1050 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1128 (1226)
Q Consensus 1050 Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGy 1128 (1226)
|+..+.. .+..+++|.+|+.++.|.+++++|+ .++.|..++.++..++++.++.+.++. ++..+..++....|
T Consensus 138 LLK~LEE----pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G- 211 (584)
T PRK14952 138 LLKIVEE----PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG- 211 (584)
T ss_pred HHHHHhc----CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 5555544 2356888888888899999999997 789999999999999999999887653 45556677776665
Q ss_pred cHHHHHHHHHHH
Q 000914 1129 SGSDLKNLCVTA 1140 (1226)
Q Consensus 1129 SgsDL~~L~~~A 1140 (1226)
+.+++.++++.+
T Consensus 212 dlR~aln~Ldql 223 (584)
T PRK14952 212 SPRDTLSVLDQL 223 (584)
T ss_pred CHHHHHHHHHHH
Confidence 444444444443
No 137
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.33 E-value=2.5e-11 Score=143.40 Aligned_cols=221 Identities=20% Similarity=0.284 Sum_probs=133.5
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhh----hcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccc
Q 000914 926 IGALENVKDTLKELVMLPLQRPELF----CKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWF 1000 (1226)
Q Consensus 926 I~Gle~vk~~L~e~V~~pL~~pelf----~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s-~~~ 1000 (1226)
++|++++++.+...+.....+-... ...++.....+|||+||||||||++|+++|..++.+|+.+++..+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 7999999999987764222221100 00011122357999999999999999999999999999999887653 577
Q ss_pred cch-HHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCchH-HH-HHHHHHhhhhhccCCc---------ccCCCc
Q 000914 1001 GEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEH-EA-MRKMKNEFMVNWDGLR---------TKDKER 1064 (1226)
Q Consensus 1001 Ge~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~-e~-l~~vl~~Ll~~ldgl~---------~k~~~~ 1064 (1226)
|.. +..+..++..+ ....++||||||||.+..++.++... .+ ...+.+.|+..++|.. ..+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 764 44455544432 23467899999999997643322110 00 0123444444444432 112345
Q ss_pred EEEEEecCCCC--------------------------------------------------CCcHHHHhhccccccCCCC
Q 000914 1065 VLVLAATNRPF--------------------------------------------------DLDEAVVRRLPRRLMVNLP 1094 (1226)
Q Consensus 1065 VlVIaTTN~p~--------------------------------------------------~Ld~aLlrRF~~~I~l~lP 1094 (1226)
.++|.|+|-.+ .+.|+|+.|++.++.|...
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 67788877510 1336667788888888888
Q ss_pred CHHHHHHHHHHH----Hhhc-------ccC---ChhcHHHHHHHc--CCCcHHHHHHHHHHHHhhhhH
Q 000914 1095 DAPNREKIIRVI----LAKE-------ELA---SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIR 1146 (1226)
Q Consensus 1095 d~eeR~eILk~l----L~k~-------~l~---~dvdl~~LA~~T--eGySgsDL~~L~~~Aa~~air 1146 (1226)
+.++..+|+..- +++. ++. ++..++.|++.. ..+-.+.|+.+++......+-
T Consensus 319 ~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 319 DEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 988888887652 2221 111 344455666653 244556666666555544433
No 138
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=4.9e-11 Score=145.79 Aligned_cols=166 Identities=20% Similarity=0.302 Sum_probs=113.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1034 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1034 (1226)
+.++|||++|+|||+|+++|++++ +..++++++.++...+...........|...++ ...+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 459999999999999999999987 578899998887665443222212223443332 46899999999885332
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC-C---CCCcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHh
Q 000914 1035 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-P---FDLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILA 1108 (1226)
Q Consensus 1035 ~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~-p---~~Ld~aLlrRF~--~~I~l~lPd~eeR~eILk~lL~ 1108 (1226)
..++.+..+++.+... .+-+|| |++. + ..+++.|++||. .++.|..|+.+.|..||+..+.
T Consensus 394 ---~tqeeLF~l~N~l~e~---------gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 ---STQEEFFHTFNTLHNA---------NKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred ---HHHHHHHHHHHHHHhc---------CCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 2244555566655421 223444 5544 3 357789999984 4678899999999999999998
Q ss_pred hcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 000914 1109 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1140 (1226)
Q Consensus 1109 k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~A 1140 (1226)
...+. ++..++.|+....+ +.++|..++...
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 87665 55667888887764 456666555543
No 139
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.33 E-value=9.2e-11 Score=129.61 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=115.0
Q ss_pred CCCccccc-C-cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 000914 920 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 994 (1226)
Q Consensus 920 ~~tfddI~-G-le~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~ 994 (1226)
..+|++++ | ...+...+...... .....++|+||+|+|||+|++++++++ +..+.+++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45788854 3 44555555554321 122479999999999999999999876 34455555433
Q ss_pred cccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCc-EEEEEecCC
Q 000914 995 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 1073 (1226)
Q Consensus 995 L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~-VlVIaTTN~ 1073 (1226)
... ....++..... ..+|+||||+.+.+. ...++.+..+++.+.. .++ .+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~---~~~~~~lf~l~n~~~e---------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD---ELWEMAIFDLYNRILE---------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---HHHHHHHHHHHHHHHH---------cCCCeEEEeCCCC
Confidence 211 11122222111 268999999988322 1233344445444431 123 345555556
Q ss_pred CCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 000914 1074 PFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1139 (1226)
Q Consensus 1074 p~~---Ld~aLlrRF~--~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~ 1139 (1226)
|.. +.+.+++|+. .++.+..|+.++|.++++......++. ++..++.|+...+| +.+.+..+++.
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 554 5799999985 688999999999999999877665543 66678888888876 45555555554
No 140
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=4.3e-11 Score=146.21 Aligned_cols=184 Identities=20% Similarity=0.293 Sum_probs=130.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 985 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~-------------- 985 (1226)
..+|++++|++.+++.|...+.. .+.++++||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999887752 233467999999999999999999999853
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 986 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 986 ----------~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
.++.++++. ..+-..++.+...+... ...|++|||+|.|- . ...+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----~-------~A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----T-------SAWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----H-------HHHHHHH
Confidence 223333211 01223456665555432 23699999999882 1 1234445
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l-~~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+++|++|+.+..+.+++++|+ .++.|..++.++...+++..+.+.+. .++..+..++..+.|. .
T Consensus 141 KtLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd-l 214 (605)
T PRK05896 141 KTLEE----PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS-L 214 (605)
T ss_pred HHHHh----CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc-H
Confidence 44443 2345777778888899999999998 58999999999999999998887664 3556678888888874 5
Q ss_pred HHHHHHHHHH
Q 000914 1131 SDLKNLCVTA 1140 (1226)
Q Consensus 1131 sDL~~L~~~A 1140 (1226)
+++.++++.+
T Consensus 215 R~AlnlLekL 224 (605)
T PRK05896 215 RDGLSILDQL 224 (605)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 141
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=4e-11 Score=148.11 Aligned_cols=182 Identities=21% Similarity=0.259 Sum_probs=130.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 46899999999999999998762 2344678999999999999999999998542
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 987 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 987 -----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
++.+++.. ...-..++.+...+... ...|+||||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLL 140 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALL 140 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHH
Confidence 33333221 11223456665555322 22599999999882 12234455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+++|.+|+.++.|.+.+++|+ ..+.|..++.++....+..++.+.++. ++..+..|+..+.|- .
T Consensus 141 k~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~-l 214 (576)
T PRK14965 141 KTLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS-M 214 (576)
T ss_pred HHHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-H
Confidence 55443 2356788888888899999999998 689999999999999999988887654 566678888888874 3
Q ss_pred HHHHHHHH
Q 000914 1131 SDLKNLCV 1138 (1226)
Q Consensus 1131 sDL~~L~~ 1138 (1226)
+++.++++
T Consensus 215 r~al~~Ld 222 (576)
T PRK14965 215 RDSLSTLD 222 (576)
T ss_pred HHHHHHHH
Confidence 44444443
No 142
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.31 E-value=2.9e-11 Score=153.50 Aligned_cols=210 Identities=18% Similarity=0.280 Sum_probs=134.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-------
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------- 997 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s------- 997 (1226)
++.|++++|+.+.+++...... . ......++|+||||+|||++++.||..++.+|+.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4899999999999887642211 0 112246999999999999999999999999999998765321
Q ss_pred --ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHh-----hhhhccCCcccCCCcEEEEEe
Q 000914 998 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 1070 (1226)
Q Consensus 998 --~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~-----Ll~~ldgl~~k~~~~VlVIaT 1070 (1226)
.|.|.....+...+..+.... .||||||||.+..... .....++..+++. |....-.+. -+-.++++|||
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-g~~~~aLlevld~~~~~~~~d~~~~~~-~dls~v~~i~T 471 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-GDPASALLEVLDPEQNVAFSDHYLEVD-YDLSDVMFVAT 471 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-CCHHHHHHHHhccccEEEEeccccccc-ccCCceEEEEc
Confidence 244544445555555544333 4899999999854321 1123333333331 000000111 12367999999
Q ss_pred cCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh-----ccc------CChhcHHHHHHH-cCCCcHHHHHHHHH
Q 000914 1071 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EEL------ASDVDLEGIANM-ADGYSGSDLKNLCV 1138 (1226)
Q Consensus 1071 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k-----~~l------~~dvdl~~LA~~-TeGySgsDL~~L~~ 1138 (1226)
+|.. .++++|++|| .+|.+..++.++..+|++.++-. ..+ .++..+..|+.. +..+-.+.|+.+++
T Consensus 472 aN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~ 549 (784)
T PRK10787 472 SNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREIS 549 (784)
T ss_pred CCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHH
Confidence 9886 5999999999 58999999999999999988842 111 123334455532 22333466666666
Q ss_pred HHHhhhhHH
Q 000914 1139 TAAHCPIRE 1147 (1226)
Q Consensus 1139 ~Aa~~aire 1147 (1226)
..+...+.+
T Consensus 550 ~i~r~~l~~ 558 (784)
T PRK10787 550 KLCRKAVKQ 558 (784)
T ss_pred HHHHHHHHH
Confidence 655444444
No 143
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.31 E-value=5e-11 Score=133.77 Aligned_cols=141 Identities=23% Similarity=0.313 Sum_probs=95.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------cccccccchHHH-H-------------------HHHHHH
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKY-V-------------------KAVFSL 1013 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~------L~s~~~Ge~e~~-I-------------------~~lF~~ 1013 (1226)
.++||+||||||||++|+++|+.+|.+|+.++|.. +.+.+.+..... + ...+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 47999999999999999999999999999998754 233332211111 1 111222
Q ss_pred HHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCccc-----CCCcEEEEEecCCC-----CCCcHHHHh
Q 000914 1014 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----DKERVLVLAATNRP-----FDLDEAVVR 1083 (1226)
Q Consensus 1014 A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k-----~~~~VlVIaTTN~p-----~~Ld~aLlr 1083 (1226)
|.+ .+.+|+||||+++ ++..+..+..++++....+.+.... .+.+++||+|+|+. ..+++++++
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 332 3479999999987 3334444445554433222221111 22468899999975 367899999
Q ss_pred hccccccCCCCCHHHHHHHHHHHH
Q 000914 1084 RLPRRLMVNLPDAPNREKIIRVIL 1107 (1226)
Q Consensus 1084 RF~~~I~l~lPd~eeR~eILk~lL 1107 (1226)
|| ..+.++.|+.++..+|++..+
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 689999999999999998865
No 144
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.30 E-value=4.3e-11 Score=147.78 Aligned_cols=196 Identities=19% Similarity=0.232 Sum_probs=127.3
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecC
Q 000914 924 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 993 (1226)
Q Consensus 924 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v~~s 993 (1226)
+.|.+.++.+++|..++...+. + ..+...++|+|+||||||++++.+.+++ .+.+++|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4789999999999888864222 1 1232335799999999999999998776 2668899995
Q ss_pred cccccc----------c------c-chHHHHHHHHHHHHh--cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhc
Q 000914 994 SITSKW----------F------G-EGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1054 (1226)
Q Consensus 994 ~L~s~~----------~------G-e~e~~I~~lF~~A~k--~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~l 1054 (1226)
.+...+ . | .....+..+|..... ....||+|||||.|... .++.+..++..
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDVLYnLFR~----- 895 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKVLFTLFDW----- 895 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHHHHHHHHH-----
Confidence 532211 0 1 122355666665422 23469999999999532 23333333221
Q ss_pred cCCcccCCCcEEEEEecCC---CCCCcHHHHhhccc-cccCCCCCHHHHHHHHHHHHhhc-ccCChhcHHHHHHHcCCCc
Q 000914 1055 DGLRTKDKERVLVLAATNR---PFDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYS 1129 (1226)
Q Consensus 1055 dgl~~k~~~~VlVIaTTN~---p~~Ld~aLlrRF~~-~I~l~lPd~eeR~eILk~lL~k~-~l~~dvdl~~LA~~TeGyS 1129 (1226)
.. ....++.|||++|. ++.|++.+.+||.. ++.|++++.+++.+||+..+... .+.++..+..+|......+
T Consensus 896 ~~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S 972 (1164)
T PTZ00112 896 PT---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS 972 (1164)
T ss_pred hh---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC
Confidence 11 12357999999986 45677888888864 48889999999999999988753 2345666777777444222
Q ss_pred --HHHHHHHHHHHH
Q 000914 1130 --GSDLKNLCVTAA 1141 (1226)
Q Consensus 1130 --gsDL~~L~~~Aa 1141 (1226)
.+....+|+.|+
T Consensus 973 GDARKALDILRrAg 986 (1164)
T PTZ00112 973 GDIRKALQICRKAF 986 (1164)
T ss_pred CHHHHHHHHHHHHH
Confidence 122234555554
No 145
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.30 E-value=2.2e-11 Score=147.01 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=58.9
Q ss_pred CCcccccccccccccchHHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEE
Q 000914 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLL 523 (1226)
Q Consensus 446 ~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL 523 (1226)
-+.-+++|++...+ +..+..|..+.-..+.|++.. +|+ +.+ .++|||+|||| +++++||||+|++++.++.
T Consensus 174 ~~~p~v~~~dIgGl--~~~i~~i~~~v~lp~~~~~l~~~~g--l~~-p~GILLyGPPG--TGKT~LAKAlA~eL~~~i~ 245 (512)
T TIGR03689 174 EEVPDVTYADIGGL--DSQIEQIRDAVELPFLHPELYREYD--LKP-PKGVLLYGPPG--CGKTLIAKAVANSLAQRIG 245 (512)
T ss_pred ecCCCCCHHHcCCh--HHHHHHHHHHHHHHhhCHHHHHhcc--CCC-CcceEEECCCC--CcHHHHHHHHHHhhccccc
Confidence 34557999999988 999999999998889998875 454 433 56899999999 8999999999999976543
No 146
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.30 E-value=4.6e-11 Score=138.50 Aligned_cols=167 Identities=17% Similarity=0.230 Sum_probs=109.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEE----
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFI---- 988 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg-------~~fi---- 988 (1226)
...|.+|+|++++|..|.-.+.. ....+|||.|++|||||++|++++..+. .+|.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 34689999999999998776542 2235899999999999999999987762 2332
Q ss_pred -----------------------------EEecCccccccccchHHHHHHHHHHHH---------hcCCeEEEEcccccc
Q 000914 989 -----------------------------NISMSSITSKWFGEGEKYVKAVFSLAS---------KIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 989 -----------------------------~v~~s~L~s~~~Ge~e~~I~~lF~~A~---------k~~PsILfIDEID~L 1030 (1226)
.+....-....+|.. .+...|.... +...++||||||+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i--D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI--DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcc--cHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 111000011112211 0111121111 122389999999998
Q ss_pred ccCCCCCchHHHHHHHHHhhhhhc--cCCcccCCCcEEEEEecCCCC-CCcHHHHhhccccccCCCCC-HHHHHHHHHHH
Q 000914 1031 LGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 1106 (1226)
Q Consensus 1031 ~~~r~~~~~~e~l~~vl~~Ll~~l--dgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~l~lPd-~eeR~eILk~l 1106 (1226)
++..+..+..++++....+ +|.....+.++++|+|.|..+ .+.++++.||...+.+..|+ .+.|.+|++..
T Consensus 157 -----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 157 -----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred -----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 4444555555544432222 454444457899999998765 69999999999999999998 59999999886
Q ss_pred H
Q 000914 1107 L 1107 (1226)
Q Consensus 1107 L 1107 (1226)
.
T Consensus 232 ~ 232 (350)
T CHL00081 232 T 232 (350)
T ss_pred h
Confidence 4
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=6.5e-11 Score=145.40 Aligned_cols=184 Identities=20% Similarity=0.220 Sum_probs=131.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 46899999999999999998862 2234679999999999999999999998642
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 987 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 987 -----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
++.+++.. ...-..++.+...+.. ....|++|||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 22222111 0112344554443332 334699999999882 12345555
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..++. .+..+++|++|+.+..|.+++++|+ ..+.|..++.++...+++..+...++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 141 KTIEE----PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred Hhhcc----CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55553 2356788888887889999999998 578999999999999999988776654 56667888888877 56
Q ss_pred HHHHHHHHHH
Q 000914 1131 SDLKNLCVTA 1140 (1226)
Q Consensus 1131 sDL~~L~~~A 1140 (1226)
+++.++++.+
T Consensus 215 R~alslLdkl 224 (563)
T PRK06647 215 RDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 148
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.29 E-value=7.9e-12 Score=135.79 Aligned_cols=207 Identities=23% Similarity=0.341 Sum_probs=139.7
Q ss_pred cccccccccccchHHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEecc
Q 000914 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1226)
Q Consensus 450 ~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~ 528 (1226)
++|||+.=.. |..|.--.- ..-+|+.|+-+ +| +.+.||.+|||| .+++|+|||||.+..++||.+-++
T Consensus 117 ~it~ddViGq--EeAK~kcrl-i~~yLenPe~Fg~W------APknVLFyGppG--TGKTm~Akalane~kvp~l~vkat 185 (368)
T COG1223 117 DITLDDVIGQ--EEAKRKCRL-IMEYLENPERFGDW------APKNVLFYGPPG--TGKTMMAKALANEAKVPLLLVKAT 185 (368)
T ss_pred cccHhhhhch--HHHHHHHHH-HHHHhhChHHhccc------CcceeEEECCCC--ccHHHHHHHHhcccCCceEEechH
Confidence 5667765555 666542111 11257777654 55 478999999999 899999999999999999999988
Q ss_pred CCCCCCCccccccccchhhhHhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCcccccCCCeeeEe
Q 000914 529 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 608 (1226)
Q Consensus 529 ~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vk~~ 608 (1226)
.|-|..-.
T Consensus 186 ~liGehVG------------------------------------------------------------------------ 193 (368)
T COG1223 186 ELIGEHVG------------------------------------------------------------------------ 193 (368)
T ss_pred HHHHHHhh------------------------------------------------------------------------
Confidence 87774221
Q ss_pred cccCCCCCCCceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCchhhhHHHHHHHHHHHhhccCCCCeEEEEcCh
Q 000914 609 GNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDI 688 (1226)
Q Consensus 609 g~~~~~~~~~~~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~k~~~~~l~evl~~es~~~P~Ilfi~di 688 (1226)
|.-..|.+||+-+.. ..|+|+|||++
T Consensus 194 ---------------------------------------------------dgar~Ihely~rA~~---~aPcivFiDE~ 219 (368)
T COG1223 194 ---------------------------------------------------DGARRIHELYERARK---AAPCIVFIDEL 219 (368)
T ss_pred ---------------------------------------------------hHHHHHHHHHHHHHh---cCCeEEEehhh
Confidence 122367888888866 99999999999
Q ss_pred hhhhc--------c-ChhhHHHHHHHHhcCC--CCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCCCccc
Q 000914 689 EKSLT--------G-NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 757 (1226)
Q Consensus 689 e~~l~--------~-~~~~~~~l~~~L~~l~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~ 757 (1226)
|.+-. | =.++.+.|-..|+.+. .+|+-||++|+ |+-+|
T Consensus 220 DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~------------------------------p~~LD- 268 (368)
T COG1223 220 DAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNR------------------------------PELLD- 268 (368)
T ss_pred hhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCC------------------------------hhhcC-
Confidence 99532 2 1455555555555553 38999999994 33344
Q ss_pred cccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCC-CcccchhhhcccC
Q 000914 758 LHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQ 836 (1226)
Q Consensus 758 ~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRrw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l-~~~dL~~La~~tk 836 (1226)
.++-.+|..-|++.+|.||.++. |+.. ....-++ -+.+++.|+.+|+
T Consensus 269 ------------~aiRsRFEeEIEF~LP~~eEr~~------------------ile~--y~k~~Plpv~~~~~~~~~~t~ 316 (368)
T COG1223 269 ------------PAIRSRFEEEIEFKLPNDEERLE------------------ILEY--YAKKFPLPVDADLRYLAAKTK 316 (368)
T ss_pred ------------HHHHhhhhheeeeeCCChHHHHH------------------HHHH--HHHhCCCccccCHHHHHHHhC
Confidence 23445555555555555555433 2222 1333344 5667899999999
Q ss_pred CCCHHHHHH-HHhhhhhcccc
Q 000914 837 TLTTEGVEK-IVGWALSHHFM 856 (1226)
Q Consensus 837 g~sgadI~~-Lv~~A~s~al~ 856 (1226)
|++|-||.+ ++..|...|+.
T Consensus 317 g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 317 GMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred CCCchhHHHHHHHHHHHHHHH
Confidence 999999876 55666655554
No 149
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=8.5e-11 Score=141.30 Aligned_cols=184 Identities=22% Similarity=0.262 Sum_probs=128.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++|+|++.++..|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 46899999999999999988762 2344679999999999999999999988542
Q ss_pred ------------EEEEecCccccccccchHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCchHHHHHHHHHhh
Q 000914 987 ------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1050 (1226)
Q Consensus 987 ------------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~L 1050 (1226)
++.+++... . +-..++.+.... ......||||||+|.|. ....+.|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~L 141 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSL 141 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHH
Confidence 333332111 1 112333322222 22345899999999882 1123445
Q ss_pred hhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCc
Q 000914 1051 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1129 (1226)
Q Consensus 1051 l~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGyS 1129 (1226)
+..++. .+..+++|++|+.+..|.+++++|+ ..+.+..++.++...+++..+.+.++. ++..+..|+..+.| +
T Consensus 142 Lk~lEe----p~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-d 215 (451)
T PRK06305 142 LKTLEE----PPQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-S 215 (451)
T ss_pred HHHhhc----CCCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 555544 2246777778888889999999999 679999999999999999888876643 55668888888876 4
Q ss_pred HHHHHHHHHHH
Q 000914 1130 GSDLKNLCVTA 1140 (1226)
Q Consensus 1130 gsDL~~L~~~A 1140 (1226)
.+++.++++..
T Consensus 216 lr~a~~~Lekl 226 (451)
T PRK06305 216 LRDAESLYDYV 226 (451)
T ss_pred HHHHHHHHHHH
Confidence 44555555443
No 150
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=4.2e-11 Score=143.59 Aligned_cols=168 Identities=18% Similarity=0.286 Sum_probs=111.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1034 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1034 (1226)
++++||||+|+|||+|++++++++ +..++++++.++...+.......-..-|....+..+.+|+|||++.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 469999999999999999999986 467888888776554322111101112333344468899999999885432
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhh
Q 000914 1035 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1109 (1226)
Q Consensus 1035 ~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~l~lPd~eeR~eILk~lL~k 1109 (1226)
..++.+..+++.+.. ....+||++...|.. +.+.+.+||. .++.+..|+.+.|..|++..+..
T Consensus 211 ---~~q~elf~~~n~l~~---------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 211 ---GVQTELFHTFNELHD---------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred ---HHHHHHHHHHHHHHH---------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 122333344444432 123455555566654 4567888884 46789999999999999999886
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 000914 1110 EELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1140 (1226)
Q Consensus 1110 ~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~A 1140 (1226)
.++. ++..+..||....| +.++|..++...
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 5443 55668888888775 456666555543
No 151
>PRK08727 hypothetical protein; Validated
Probab=99.29 E-value=2.9e-10 Score=125.45 Aligned_cols=146 Identities=22% Similarity=0.303 Sum_probs=97.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1036 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1036 (1226)
..++|+||+|||||+|++++++++ +...++++..++.. .+..++... ....+|+|||++.+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCCh--
Confidence 459999999999999999998775 56667776544321 223333332 234799999999884322
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEec-CCCCCC---cHHHHhhc--cccccCCCCCHHHHHHHHHHHHhhc
Q 000914 1037 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-NRPFDL---DEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKE 1110 (1226)
Q Consensus 1037 ~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTT-N~p~~L---d~aLlrRF--~~~I~l~lPd~eeR~eILk~lL~k~ 1110 (1226)
..+..+..+++.+.. .+..||.|+ ..|..+ ++.+.+|| ...+.++.|+.++|.++++..+...
T Consensus 110 -~~~~~lf~l~n~~~~----------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 -EDEVALFDFHNRARA----------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -HHHHHHHHHHHHHHH----------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 223334444443321 123344455 455544 68999997 4678999999999999999977665
Q ss_pred ccC-ChhcHHHHHHHcCCC
Q 000914 1111 ELA-SDVDLEGIANMADGY 1128 (1226)
Q Consensus 1111 ~l~-~dvdl~~LA~~TeGy 1128 (1226)
++. ++..+..|+..+.|-
T Consensus 179 ~l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 179 GLALDEAAIDWLLTHGERE 197 (233)
T ss_pred CCCCCHHHHHHHHHhCCCC
Confidence 543 566688888887753
No 152
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=1.6e-10 Score=138.80 Aligned_cols=169 Identities=17% Similarity=0.261 Sum_probs=114.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHH---HHHHHHHHHHhcCCeEEEEccccccc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVVFVDEVDSML 1031 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~Ge~e~---~I~~lF~~A~k~~PsILfIDEID~L~ 1031 (1226)
++++|||++|+|||+|++++++++ +..++++++.++...+...... .+.. |.... ....+|+||||+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 569999999999999999999865 4678888887766544332111 1111 21111 346799999999884
Q ss_pred cCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhhcc--ccccCCCCCHHHHHHHHHHH
Q 000914 1032 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVI 1106 (1226)
Q Consensus 1032 ~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~l~lPd~eeR~eILk~l 1106 (1226)
++. ..++.+..+++.+... .+.+||++...|. .+++.+++||. .++.+..|+.++|.+||+..
T Consensus 220 ~k~---~~~e~lf~l~N~~~~~---------~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFIEN---------DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH---HHHHHHHHHHHHHHHc---------CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 221 2344555555555421 2234444444443 45789999984 57788999999999999999
Q ss_pred Hhhccc---CChhcHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000914 1107 LAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1143 (1226)
Q Consensus 1107 L~k~~l---~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~ 1143 (1226)
+...++ .++..+..|+..+.| ..+.|..+|..+...
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 987553 456667888888876 577777777766543
No 153
>PRK06893 DNA replication initiation factor; Validated
Probab=99.28 E-value=2e-10 Score=126.45 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=100.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1036 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1036 (1226)
..++|+||||||||+|++++|+++ +....+++..... .....++... ....+|+||||+.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCCh--
Confidence 358999999999999999999986 3455555543211 1111222222 235799999999884322
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc---HHHHhhc--cccccCCCCCHHHHHHHHHHHHhhcc
Q 000914 1037 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEE 1111 (1226)
Q Consensus 1037 ~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld---~aLlrRF--~~~I~l~lPd~eeR~eILk~lL~k~~ 1111 (1226)
..+..+..+++.+.. ....++|++++..|..++ +.+.+|+ +.++.++.|+.++|.+|++..+...+
T Consensus 108 -~~~~~l~~l~n~~~~--------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 -EWELAIFDLFNRIKE--------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred -HHHHHHHHHHHHHHH--------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 122233334443321 113345566666666554 7888876 45888999999999999999887665
Q ss_pred cC-ChhcHHHHHHHcCCCcHHHHHHHHH
Q 000914 1112 LA-SDVDLEGIANMADGYSGSDLKNLCV 1138 (1226)
Q Consensus 1112 l~-~dvdl~~LA~~TeGySgsDL~~L~~ 1138 (1226)
+. ++..+..|++...|- .+.+..+++
T Consensus 179 l~l~~~v~~~L~~~~~~d-~r~l~~~l~ 205 (229)
T PRK06893 179 IELSDEVANFLLKRLDRD-MHTLFDALD 205 (229)
T ss_pred CCCCHHHHHHHHHhccCC-HHHHHHHHH
Confidence 54 666688888888763 444444444
No 154
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=9.7e-11 Score=145.62 Aligned_cols=190 Identities=21% Similarity=0.288 Sum_probs=131.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ec----
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SM---- 992 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v---~~---- 992 (1226)
+.+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 46899999999999999998862 23446789999999999999999999986531100 00
Q ss_pred ------Cccc-ccc-ccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000914 993 ------SSIT-SKW-FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1060 (1226)
Q Consensus 993 ------s~L~-s~~-~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k 1060 (1226)
.++. ... ...+...++.+...+... ...|++|||+|.|. ....+.|+..++.
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEE---- 144 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEE---- 144 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhc----
Confidence 0000 000 001234467776666543 34699999999882 1234555555554
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 000914 1061 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1139 (1226)
Q Consensus 1061 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~ 1139 (1226)
.+..+++|.+|+.++.|.+++++|+ .++.|..++.++...+++..+.+.++. ++..+..||..+.|- .+++..+++.
T Consensus 145 PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gs-lR~AlslLek 222 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGS-LRDALSIAEQ 222 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 2356788888888899999999999 589999999999999999988877654 444577888888764 4444444444
Q ss_pred H
Q 000914 1140 A 1140 (1226)
Q Consensus 1140 A 1140 (1226)
+
T Consensus 223 l 223 (725)
T PRK07133 223 V 223 (725)
T ss_pred H
Confidence 3
No 155
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=9.8e-11 Score=141.77 Aligned_cols=185 Identities=21% Similarity=0.307 Sum_probs=127.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 46899999999999999988862 2234568999999999999999999998641
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 987 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 987 -----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
++.++.+. ..+-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLL 140 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALL 140 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHH
Confidence 12222111 01223355555444332 34699999999882 12234455
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..+... +..+++|.+|+.++.+.+++.+|+ ..+.+..|+.++...+++.++...++. ++..+..|+..+.| +.
T Consensus 141 k~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 141 KTLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred HHHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 444432 234566666677788888999998 579999999999999999999887654 45567788888776 45
Q ss_pred HHHHHHHHHHH
Q 000914 1131 SDLKNLCVTAA 1141 (1226)
Q Consensus 1131 sDL~~L~~~Aa 1141 (1226)
+++.++++.+.
T Consensus 215 r~al~~Ldkl~ 225 (486)
T PRK14953 215 RDAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHHH
Confidence 55556655553
No 156
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.27 E-value=4.8e-11 Score=137.92 Aligned_cols=167 Identities=21% Similarity=0.292 Sum_probs=107.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CC--cEEEE
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GA--NFINI 990 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el-------g~--~fi~v 990 (1226)
...|.+|+|++++++.|.-.+.. ....++||+|+||||||++|++++..+ ++ ++..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 35789999999999888654321 112579999999999999999999988 33 22111
Q ss_pred ecC-c--------c---------------ccccccch--HHH--------HHHHHHHHHhcCCeEEEEccccccccCCCC
Q 000914 991 SMS-S--------I---------------TSKWFGEG--EKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRREN 1036 (1226)
Q Consensus 991 ~~s-~--------L---------------~s~~~Ge~--e~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1036 (1226)
.+. + + ....+|.. +.. -.+.+..| ..++||||||+.+ +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl-----~ 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLL-----E 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhC-----C
Confidence 110 0 0 00012210 000 01111122 2379999999988 3
Q ss_pred CchHHHHHHHHHhhh--hhccCCcccCCCcEEEEEecCCCC-CCcHHHHhhccccccCCCCCH-HHHHHHHHHHHh
Q 000914 1037 PGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVILA 1108 (1226)
Q Consensus 1037 ~~~~e~l~~vl~~Ll--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~l~lPd~-eeR~eILk~lL~ 1108 (1226)
+..+..+...+++-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++....
T Consensus 142 ~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 142 DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 344455555554332 233554444557899999999754 689999999998899988876 899999988543
No 157
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.3e-10 Score=136.05 Aligned_cols=184 Identities=18% Similarity=0.235 Sum_probs=128.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 987 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~f------------ 987 (1226)
..+|++++|++.+++.+...+.. .+.++++|||||||+|||++|+++|+.+..+.
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 46899999999999999888762 22346899999999999999999999885421
Q ss_pred EEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCC
Q 000914 988 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1063 (1226)
Q Consensus 988 i~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~ 1063 (1226)
+.++.. .......++.++..+... ...||+|||+|.+.. ...+.++..++.. +.
T Consensus 80 ~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~----~~ 137 (367)
T PRK14970 80 FELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP----PA 137 (367)
T ss_pred EEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC----CC
Confidence 112111 111234566667665432 246999999998721 1234444444431 23
Q ss_pred cEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 000914 1064 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1140 (1226)
Q Consensus 1064 ~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~A 1140 (1226)
..++|.+++.+..+.+++.+|+ ..+.+..|+.++...++...+.+.++. ++..+..|+..+.| +.+.+.+.++..
T Consensus 138 ~~~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl 213 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRV 213 (367)
T ss_pred ceEEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4566666777788999999998 578999999999999999988887753 56677888887765 444444444443
No 158
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1e-10 Score=144.31 Aligned_cols=191 Identities=22% Similarity=0.178 Sum_probs=132.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-------c
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------M 992 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~-------~ 992 (1226)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.....+ |
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 46899999999999999997762 234578999999999999999999999865432111 0
Q ss_pred --------------Cccccc--cccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhhh
Q 000914 993 --------------SSITSK--WFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1052 (1226)
Q Consensus 993 --------------s~L~s~--~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~ 1052 (1226)
.++... -....-..++.++..+... ...|+||||+|.|. ....+.|+.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLK 154 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLK 154 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHH
Confidence 001000 0011234566676665432 24699999999882 122344554
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHH
Q 000914 1053 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1131 (1226)
Q Consensus 1053 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgs 1131 (1226)
.+.. .+..+.+|.+|+.++.+.+.+++|+ ..+.|..++.++...+++..+.+.++. ++..+..|+..+.| +.+
T Consensus 155 tLEe----Pp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 155 TLEE----PPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred HHHh----CCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 4443 2345777777777788888999998 689999999999999999999887654 45667778888876 455
Q ss_pred HHHHHHHHHH
Q 000914 1132 DLKNLCVTAA 1141 (1226)
Q Consensus 1132 DL~~L~~~Aa 1141 (1226)
++.++++.+.
T Consensus 229 ~al~~Ldkli 238 (598)
T PRK09111 229 DGLSLLDQAI 238 (598)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 159
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.26 E-value=5.9e-12 Score=149.23 Aligned_cols=202 Identities=24% Similarity=0.328 Sum_probs=136.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc-
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 995 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L- 995 (1226)
..+|++|+|....+..+.+.+.. +.+....|||.|.+||||..+|++|.+.. +.|||.+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 56899999999988888877652 13344679999999999999999998776 789999999874
Q ss_pred ----ccccccchHHH--------HHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCC
Q 000914 996 ----TSKWFGEGEKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1063 (1226)
Q Consensus 996 ----~s~~~Ge~e~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~ 1063 (1226)
.+..||..... -.++|+.|.. +.||||||..| +...|..+.+++++-....-|-....+.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~v 380 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIPV 380 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCceee
Confidence 34455532211 2235555555 89999999988 5567788888888776655555555568
Q ss_pred cEEEEEecCCC--CCCc-----HHHHhhccccccCCCCCHHHHHH----HHHHHHhhc----cc-CChhcHHHHHHHcC-
Q 000914 1064 RVLVLAATNRP--FDLD-----EAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL-ASDVDLEGIANMAD- 1126 (1226)
Q Consensus 1064 ~VlVIaTTN~p--~~Ld-----~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k~----~l-~~dvdl~~LA~~Te- 1126 (1226)
+|+||||||+. +.+. +.+.=|+ .++.+.+|...+|.+ +..+++.+. +. ...+.-+.++....
T Consensus 381 DVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y 459 (560)
T COG3829 381 DVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY 459 (560)
T ss_pred EEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC
Confidence 89999999973 2222 2222255 478888999888865 445555542 11 12222233333222
Q ss_pred CC--cHHHHHHHHHHHHh
Q 000914 1127 GY--SGSDLKNLCVTAAH 1142 (1226)
Q Consensus 1127 Gy--SgsDL~~L~~~Aa~ 1142 (1226)
.| +.++|.|++++++.
T Consensus 460 ~WPGNVRELeNviER~v~ 477 (560)
T COG3829 460 DWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCchHHHHHHHHHHHHh
Confidence 23 45888888888875
No 160
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.26 E-value=1.6e-10 Score=143.74 Aligned_cols=231 Identities=19% Similarity=0.250 Sum_probs=139.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 989 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~ 989 (1226)
..+|++++|.+..+..+...+.. . .+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~-~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------P-FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------C-CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 45789999999988887665531 1 13579999999999999999998665 357899
Q ss_pred EecCcccc-------ccccchHHH----HHHHHH----------HHHhcCCeEEEEccccccccCCCCCchHHHHHHHHH
Q 000914 990 ISMSSITS-------KWFGEGEKY----VKAVFS----------LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1048 (1226)
Q Consensus 990 v~~s~L~s-------~~~Ge~e~~----I~~lF~----------~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~ 1048 (1226)
++|..+.. .+++..... .+..+. .......++|||||++.| +...+..+..+++
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le 290 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLE 290 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHh
Confidence 99876521 122211100 000000 001223579999999988 4344555555554
Q ss_pred hhhhhccC-----------------CcccCCCcEEEEEe-cCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhc
Q 000914 1049 EFMVNWDG-----------------LRTKDKERVLVLAA-TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 1110 (1226)
Q Consensus 1049 ~Ll~~ldg-----------------l~~k~~~~VlVIaT-TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~ 1110 (1226)
.-...+.. +....+..+++|++ |+.+..+++++++||. .+.++.++.++...|++.++.+.
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 32211100 00112234566654 5668889999999995 67888899999999999998875
Q ss_pred ccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHH
Q 000914 1111 ELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ 1189 (1226)
Q Consensus 1111 ~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~ 1189 (1226)
.+. ++..++.|+..+. .++...+++..+...+..+... . . .......|+.+|+.+++..
T Consensus 370 ~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~--------~-~---------~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 370 NVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAE--------A-G---------KENDKVTITQDDVYEVIQI 429 (615)
T ss_pred CCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHH--------h-c---------cCCCCeeECHHHHHHHhCC
Confidence 432 4445566666543 3444445555554332222100 0 0 0012357899999999875
Q ss_pred h
Q 000914 1190 V 1190 (1226)
Q Consensus 1190 v 1190 (1226)
-
T Consensus 430 ~ 430 (615)
T TIGR02903 430 S 430 (615)
T ss_pred C
Confidence 3
No 161
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.6e-10 Score=140.44 Aligned_cols=188 Identities=21% Similarity=0.233 Sum_probs=132.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 985 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~-------------- 985 (1226)
..+|++++|++.+++.|...+.. + +.++.+||+||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~----------g---rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN----------N---RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc----------C---CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999998762 2 23456899999999999999999998732
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 986 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 986 ----------~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
.++.++.+.- ..-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 1233332110 0123455555443221 12599999999882 12234444
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySg 1130 (1226)
..+... +..+.+|.+|+.+..+.+++++|+ ..+.|..++.++....++..+.+.++. ++..+..|+..+.| +.
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 444432 245667777777899999999997 689999999999999999998887654 56678888888876 67
Q ss_pred HHHHHHHHHHHhhh
Q 000914 1131 SDLKNLCVTAAHCP 1144 (1226)
Q Consensus 1131 sDL~~L~~~Aa~~a 1144 (1226)
+++.++++.+...+
T Consensus 213 R~alnlLdqai~~~ 226 (535)
T PRK08451 213 RDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777766443
No 162
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.25 E-value=3.8e-11 Score=144.35 Aligned_cols=193 Identities=23% Similarity=0.273 Sum_probs=143.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 991 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~f-------i~v~- 991 (1226)
..+|++++|++.+...|...+.. .+-..+.||.||.|||||++||.+|+.+++.- ..|.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 46899999999999999998873 33446899999999999999999999996542 1111
Q ss_pred cCccccc-cc---------cchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCC
Q 000914 992 MSSITSK-WF---------GEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1057 (1226)
Q Consensus 992 ~s~L~s~-~~---------Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl 1057 (1226)
|-.+... +. ..+-..++.+.+.+.. ...-|.+|||+|.|- ...++.|+..+..
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc-
Confidence 1111111 11 1123356666665543 234699999999872 4566777776654
Q ss_pred cccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHH
Q 000914 1058 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1136 (1226)
Q Consensus 1058 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L 1136 (1226)
++..|.+|.+|..++.++..+++|+ .++.|...+.++....|..++.++++. ++..+..||+..+| +.+|...|
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 4578999999999999999999999 688999999999999999999998876 55567888888887 56677777
Q ss_pred HHHHHhh
Q 000914 1137 CVTAAHC 1143 (1226)
Q Consensus 1137 ~~~Aa~~ 1143 (1226)
+..|...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 7776544
No 163
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.2e-10 Score=135.89 Aligned_cols=184 Identities=17% Similarity=0.205 Sum_probs=125.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 46899999999999999887762 2344679999999999999999999999662
Q ss_pred -------------------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHH
Q 000914 987 -------------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAM 1043 (1226)
Q Consensus 987 -------------------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l 1043 (1226)
++.++... ......++.+...+.. ....|+||||+|.|..
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----------- 141 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----------- 141 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-----------
Confidence 11121111 0112345555444422 1236999999998821
Q ss_pred HHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhccc-CChhcHHHHH
Q 000914 1044 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIA 1122 (1226)
Q Consensus 1044 ~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l-~~dvdl~~LA 1122 (1226)
...+.|+..++. .+..+++|.+|+.+..+.+++.+|+ ..+.+..++.++-...++..+...+. .++..+..|+
T Consensus 142 -~~~~~LLk~LEe----p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 142 -AAFNAFLKTLEE----PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred -HHHHHHHHHHhc----CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 122334444432 2234566666667788888999998 58999999999999899988887664 3666788888
Q ss_pred HHcCCCcHHHHHHHHHHH
Q 000914 1123 NMADGYSGSDLKNLCVTA 1140 (1226)
Q Consensus 1123 ~~TeGySgsDL~~L~~~A 1140 (1226)
..+.|. .+.+.++++.+
T Consensus 216 ~~s~g~-lr~a~~~L~kl 232 (397)
T PRK14955 216 RKAQGS-MRDAQSILDQV 232 (397)
T ss_pred HHcCCC-HHHHHHHHHHH
Confidence 888774 44555555543
No 164
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.23 E-value=3.2e-11 Score=143.19 Aligned_cols=207 Identities=21% Similarity=0.272 Sum_probs=144.7
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-- 996 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~-- 996 (1226)
.+.+++|....++++.+.+.. +......|||+|++||||..+|++|.+.. +.|||.+||+.+.
T Consensus 139 ~~~~liG~S~am~~l~~~i~k------------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK------------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH------------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 456799999999999888763 12233579999999999999999998777 6799999998753
Q ss_pred ---cccccchHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEE
Q 000914 997 ---SKWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1066 (1226)
Q Consensus 997 ---s~~~Ge~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~Vl 1066 (1226)
+..||.... .-.+.|+.|.+ +.||||||..| +...|..+.+++++-....-|-...-+.+|.
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 334553221 22335666665 89999999988 4556777778887766555555555567899
Q ss_pred EEEecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhh----ccc-CChhcHHHHHHHcC-CC-
Q 000914 1067 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EEL-ASDVDLEGIANMAD-GY- 1128 (1226)
Q Consensus 1067 VIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k----~~l-~~dvdl~~LA~~Te-Gy- 1128 (1226)
||++||.. ..+-+.+.-|+ .++.+.+|...+|.+ ++++++.+ .+. ...+.-+.++.+.. .|
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 357 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWP 357 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999873 23445555577 589999999998876 55555554 221 23444555555543 33
Q ss_pred -cHHHHHHHHHHHHhhhhHHHH
Q 000914 1129 -SGSDLKNLCVTAAHCPIREIL 1149 (1226)
Q Consensus 1129 -SgsDL~~L~~~Aa~~aireli 1149 (1226)
+.++|.|++++++..+-...+
T Consensus 358 GNVREL~N~ver~~il~~~~~i 379 (464)
T COG2204 358 GNVRELENVVERAVILSEGPEI 379 (464)
T ss_pred hHHHHHHHHHHHHHhcCCcccc
Confidence 448888888888766554433
No 165
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.2e-10 Score=142.25 Aligned_cols=182 Identities=21% Similarity=0.254 Sum_probs=129.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 986 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------- 986 (1226)
..+|++++|++.+++.|...+.. + +-..++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~----------~---rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS----------N---RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc----------C---CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 46899999999999999998863 1 223579999999999999999999998663
Q ss_pred -------------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHh
Q 000914 987 -------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1049 (1226)
Q Consensus 987 -------------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~ 1049 (1226)
++.++.. ....-..++.++..+... ...||||||+|.|- ....+.
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~na 140 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNA 140 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHH
Confidence 1222211 122345677777666532 23699999999882 123455
Q ss_pred hhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCC
Q 000914 1050 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1128 (1226)
Q Consensus 1050 Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGy 1128 (1226)
|+..++. ....+++|++|+.+..+.+++++|+ ..+.|..++.++-...++.++.+.++. ++..+..|+..+.|.
T Consensus 141 LLK~LEe----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~ 215 (620)
T PRK14948 141 LLKTLEE----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG 215 (620)
T ss_pred HHHHHhc----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 5555553 2355777777778888999999998 678898999888888888888775543 445678888888875
Q ss_pred cHHHHHHHHH
Q 000914 1129 SGSDLKNLCV 1138 (1226)
Q Consensus 1129 SgsDL~~L~~ 1138 (1226)
- +++.++++
T Consensus 216 l-r~A~~lLe 224 (620)
T PRK14948 216 L-RDAESLLD 224 (620)
T ss_pred H-HHHHHHHH
Confidence 4 44444444
No 166
>PRK06620 hypothetical protein; Validated
Probab=99.22 E-value=4.5e-10 Score=122.63 Aligned_cols=143 Identities=17% Similarity=0.246 Sum_probs=96.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1039 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1039 (1226)
+.++||||||+|||+|++++++..+..++. ... . ....+ ....+|+|||||.+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~-----~------~~~~~-----~~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF-----F------NEEIL-----EKYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh-----h------chhHH-----hcCCEEEEeccccc--------h
Confidence 579999999999999999999988754332 100 0 01111 12379999999965 1
Q ss_pred HHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC--CcHHHHhhccc--cccCCCCCHHHHHHHHHHHHhhcccC-C
Q 000914 1040 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD--LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAKEELA-S 1114 (1226)
Q Consensus 1040 ~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~--Ld~aLlrRF~~--~I~l~lPd~eeR~eILk~lL~k~~l~-~ 1114 (1226)
...+..+++.+. ..+..+||+++..|.. + +.+++|+.. ++.+..|+.+.+..+++..+...++. +
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 233444444443 1244677777655543 5 889999843 68999999999999999988865543 5
Q ss_pred hhcHHHHHHHcCCCcHHHHHHHHHH
Q 000914 1115 DVDLEGIANMADGYSGSDLKNLCVT 1139 (1226)
Q Consensus 1115 dvdl~~LA~~TeGySgsDL~~L~~~ 1139 (1226)
+..++.|+....| +.+.+.++++.
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHH
Confidence 6668888888865 45555555544
No 167
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.22 E-value=2.8e-11 Score=141.48 Aligned_cols=206 Identities=23% Similarity=0.296 Sum_probs=136.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecCccc
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINISMSSIT 996 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~e----lg~~fi~v~~s~L~ 996 (1226)
..+.+++|.....+.+++.+.. + .....+|||+|++||||+.+|++|... .+.|||.+||+.+.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-------~-----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-------Y-----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-------h-----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4577899998888888777753 1 122356999999999999999999644 36799999998754
Q ss_pred cc-----cccch-------HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCc
Q 000914 997 SK-----WFGEG-------EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1064 (1226)
Q Consensus 997 s~-----~~Ge~-------e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~ 1064 (1226)
.. .||.. ...-.++|+.|.. ++||+|||+.| ++..|+.+.++++......-|-......+
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 33 23321 2223346666665 89999999998 67788899999888776655545455688
Q ss_pred EEEEEecCCC--CCCcH--HHHhhccccccCCCCCHHHHHH----HHHHHHhh----cccCChhc----HHHHHHHcCCC
Q 000914 1065 VLVLAATNRP--FDLDE--AVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELASDVD----LEGIANMADGY 1128 (1226)
Q Consensus 1065 VlVIaTTN~p--~~Ld~--aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k----~~l~~dvd----l~~LA~~TeGy 1128 (1226)
|++|+||+.. ..+-. .+.+|. ..+.|.+|...+|.. ++++++.. .+.....+ +..|-...---
T Consensus 215 VRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pG 293 (403)
T COG1221 215 VRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPG 293 (403)
T ss_pred ceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCC
Confidence 9999999742 23333 444432 246777888777744 55555544 33321112 22222222122
Q ss_pred cHHHHHHHHHHHHhhhhHH
Q 000914 1129 SGSDLKNLCVTAAHCPIRE 1147 (1226)
Q Consensus 1129 SgsDL~~L~~~Aa~~aire 1147 (1226)
+.++|+++++.++..+..+
T Consensus 294 NirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 294 NIRELKNLVERAVAQASGE 312 (403)
T ss_pred cHHHHHHHHHHHHHHhccc
Confidence 6689999999998776433
No 168
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.22 E-value=5.3e-11 Score=139.63 Aligned_cols=201 Identities=24% Similarity=0.282 Sum_probs=140.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc-
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 995 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L- 995 (1226)
...+..|+|....+.++.+.+.. +......|||.|.+||||..+|++|.+.. +-||+.+||+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~------------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV------------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH------------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 55677899999999998887763 12233579999999999999999998887 679999999874
Q ss_pred ----ccccccchHHHHHHHHHHHHhcC--------CeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCC
Q 000914 996 ----TSKWFGEGEKYVKAVFSLASKIA--------PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1063 (1226)
Q Consensus 996 ----~s~~~Ge~e~~I~~lF~~A~k~~--------PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~ 1063 (1226)
.+..||. .++.|.-|.... .+.||||||..| +...|..+.+++++--.+.-|-...-+.
T Consensus 287 esLlESELFGH----eKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 287 ESLLESELFGH----EKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred hHHHHHHHhcc----cccccccchhccCcceeecCCCeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 3445553 334444443322 279999999988 6677888888888876665555544567
Q ss_pred cEEEEEecCCCCCCcHHHHh---------hccccccCCCCCHHHHHH----HHHHHHhhc----cc-C---ChhcHHHHH
Q 000914 1064 RVLVLAATNRPFDLDEAVVR---------RLPRRLMVNLPDAPNREK----IIRVILAKE----EL-A---SDVDLEGIA 1122 (1226)
Q Consensus 1064 ~VlVIaTTN~p~~Ld~aLlr---------RF~~~I~l~lPd~eeR~e----ILk~lL~k~----~l-~---~dvdl~~LA 1122 (1226)
.|.||||||+ +|..++.. |+ .++.+.+|...+|.+ +.++++++. +. . +...++.|.
T Consensus 358 DVRiIAATNR--DL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNR--DLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccch--hHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 8999999997 45554444 44 366777888888854 445555542 22 1 222234444
Q ss_pred HHcCCCcHHHHHHHHHHHHhhh
Q 000914 1123 NMADGYSGSDLKNLCVTAAHCP 1144 (1226)
Q Consensus 1123 ~~TeGySgsDL~~L~~~Aa~~a 1144 (1226)
+..---+.++|++++++|+..+
T Consensus 435 ~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh
Confidence 4333336699999999999855
No 169
>PRK05642 DNA replication initiation factor; Validated
Probab=99.21 E-value=7.2e-10 Score=122.48 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=105.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1036 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1036 (1226)
+.++|+||+|+|||+|++++++++ +..+++++..++... ...+..... ...+|+|||++.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~--~~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLE--QYELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhh--hCCEEEEechhhhcCCh--
Confidence 579999999999999999999765 667888887665432 112222222 22689999999874321
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhcc
Q 000914 1037 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEE 1111 (1226)
Q Consensus 1037 ~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~l~lPd~eeR~eILk~lL~k~~ 1111 (1226)
..++.+..+++.+. ..++.+||+++..|. .+.+.+++||. .++.+..|+.++|.++++..+...+
T Consensus 114 -~~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 -DWEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred -HHHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 22344555555443 124466777665553 33688999984 5677899999999999996665544
Q ss_pred c-CChhcHHHHHHHcCCCcHHHHHHHHHH
Q 000914 1112 L-ASDVDLEGIANMADGYSGSDLKNLCVT 1139 (1226)
Q Consensus 1112 l-~~dvdl~~LA~~TeGySgsDL~~L~~~ 1139 (1226)
+ .++..++.|++..++ +.+.+..+++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 211 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLER 211 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 4 356667888887775 45555555443
No 170
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.20 E-value=1.7e-10 Score=113.71 Aligned_cols=141 Identities=40% Similarity=0.619 Sum_probs=89.3
Q ss_pred CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchH
Q 000914 928 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGE 1004 (1226)
Q Consensus 928 Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge~e 1004 (1226)
|.+.+.+.+...+.. ....+++|+||||+|||++++.++..+ +.+++.+++............
T Consensus 2 ~~~~~~~~i~~~~~~--------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 67 (151)
T cd00009 2 GQEEAIEALREALEL--------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67 (151)
T ss_pred chHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH
Confidence 445566666665541 133579999999999999999999998 889999998775543222111
Q ss_pred HH---HHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC--CCcH
Q 000914 1005 KY---VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDE 1079 (1226)
Q Consensus 1005 ~~---I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~ 1079 (1226)
.. ....+..+....+.+|+|||++.+. ......+..++..+. ... ....++.+|++++... .+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-----~~~~~~~~~~i~~~~---~~~--~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 68 FGHFLVRLLFELAEKAKPGVLFIDEIDSLS-----RGAQNALLRVLETLN---DLR--IDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhhHhHHHHhhccCCCeEEEEeChhhhh-----HHHHHHHHHHHHhcC---cee--ccCCCeEEEEecCccccCCcCh
Confidence 11 1222334455568999999999771 111122222222221 111 1235688899998876 7888
Q ss_pred HHHhhccccccCC
Q 000914 1080 AVVRRLPRRLMVN 1092 (1226)
Q Consensus 1080 aLlrRF~~~I~l~ 1092 (1226)
.+.+||+.++.++
T Consensus 138 ~~~~r~~~~i~~~ 150 (151)
T cd00009 138 ALYDRLDIRIVIP 150 (151)
T ss_pred hHHhhhccEeecC
Confidence 9999998666554
No 171
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.20 E-value=4.3e-10 Score=128.21 Aligned_cols=184 Identities=22% Similarity=0.275 Sum_probs=122.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 994 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg-----~~fi~v~~s~ 994 (1226)
..+|+++.|.+++++.|..++.. + ...++||+||||+|||++++++++++. .+++.+++++
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~----------~----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE----------K----NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 46899999999999999987752 1 113699999999999999999999872 3456665443
Q ss_pred cccccccchHHHHHHH-HHHHHh-----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000914 995 ITSKWFGEGEKYVKAV-FSLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1068 (1226)
Q Consensus 995 L~s~~~Ge~e~~I~~l-F~~A~k-----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVI 1068 (1226)
... ...++.. ...+.. ..+.+|+|||+|.+.. ..+ +.|...++... ....+|
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----~~~-------~~L~~~le~~~----~~~~lI 136 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----DAQ-------QALRRTMEMYS----QNTRFI 136 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----HHH-------HHHHHHHhcCC----CCCeEE
Confidence 211 1122222 222222 2346999999998821 111 22222233221 234566
Q ss_pred EecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000914 1069 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1141 (1226)
Q Consensus 1069 aTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa 1141 (1226)
.++|.+..+.+.+.+|+ .++.+..++.++...+++.++.+.++. ++..+..++..+.|... .+.+.++.+.
T Consensus 137 l~~~~~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r-~~~~~l~~~~ 208 (319)
T PRK00440 137 LSCNYSSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMR-KAINALQAAA 208 (319)
T ss_pred EEeCCccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 67777778888898998 468999999999999999999887653 56678889888877544 3444444443
No 172
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=4.6e-10 Score=139.19 Aligned_cols=183 Identities=22% Similarity=0.279 Sum_probs=125.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 987 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~f------------ 987 (1226)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 46899999999999999887762 12345689999999999999999999985422
Q ss_pred -------------EEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhh
Q 000914 988 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1050 (1226)
Q Consensus 988 -------------i~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~L 1050 (1226)
+.++... ...-..++.+...+.. ....||||||+|.|. ...++.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHH
Confidence 2222110 1112334444443322 224699999999882 1223445
Q ss_pred hhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCc
Q 000914 1051 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1129 (1226)
Q Consensus 1051 l~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGyS 1129 (1226)
+..++.. ...++||.+++..+.+.+.+++|+ .++.|..++..+...+++.++.+.++. ++..+..|+..+.| +
T Consensus 141 Lk~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 5444442 244667777777788888999998 578899999999999999888876653 55567788888877 5
Q ss_pred HHHHHHHHHH
Q 000914 1130 GSDLKNLCVT 1139 (1226)
Q Consensus 1130 gsDL~~L~~~ 1139 (1226)
.+++.++++.
T Consensus 215 lr~al~~Lek 224 (585)
T PRK14950 215 MRDAENLLQQ 224 (585)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 173
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.18 E-value=5.5e-10 Score=122.27 Aligned_cols=168 Identities=19% Similarity=0.314 Sum_probs=105.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1034 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1034 (1226)
..++||||+|+|||+|++|+++++ +..++++++.++...+..........-|..... ...+|+||+|+.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGK- 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTH-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCc-
Confidence 469999999999999999998875 577889988776544322111100111222222 4579999999998422
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC---CCcHHHHhhccc--cccCCCCCHHHHHHHHHHHHhh
Q 000914 1035 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAK 1109 (1226)
Q Consensus 1035 ~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~--~I~l~lPd~eeR~eILk~lL~k 1109 (1226)
...++.+..+++.+... ++.+||++...|. .+++.+.+||.. ++.+..|+.+.|.+|++..+..
T Consensus 113 --~~~q~~lf~l~n~~~~~---------~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 113 --QRTQEELFHLFNRLIES---------GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp --HHHHHHHHHHHHHHHHT---------TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHhh---------CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 12345555666655422 3445665555554 456889999854 7888999999999999999988
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000914 1110 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1141 (1226)
Q Consensus 1110 ~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa 1141 (1226)
.++. ++..++.|+....+ +.++|..++....
T Consensus 182 ~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 182 RGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp TT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 7665 55556777777654 6667776665543
No 174
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=6.6e-10 Score=137.55 Aligned_cols=182 Identities=18% Similarity=0.221 Sum_probs=125.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 987 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~f------------ 987 (1226)
..+|++|+|++.+++.|+..+.. .+-+.++||+||+|+|||++|+.+|+.+.+.-
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 46899999999999999887752 23346799999999999999999999997621
Q ss_pred --------------------EEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHH
Q 000914 988 --------------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAM 1043 (1226)
Q Consensus 988 --------------------i~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l 1043 (1226)
+.+++.. ......++.+.+.+.. ....|++|||+|.|. .
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s------~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~--- 141 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------T--- 141 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------H---
Confidence 1111100 0112345554444421 223699999999882 1
Q ss_pred HHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhccc-CChhcHHHHH
Q 000914 1044 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIA 1122 (1226)
Q Consensus 1044 ~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l-~~dvdl~~LA 1122 (1226)
...+.|+..++.. +..+++|.+|+.+..|.+.+.+|+ ..+.|..++.++-...++.++...++ .++..+..|+
T Consensus 142 -~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 142 -AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred -HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 1234455554442 234566666677788989999998 68999999999999899988887665 3666788888
Q ss_pred HHcCCCcHHHHHHHHH
Q 000914 1123 NMADGYSGSDLKNLCV 1138 (1226)
Q Consensus 1123 ~~TeGySgsDL~~L~~ 1138 (1226)
..+.|.. +++.++++
T Consensus 216 ~~s~Gdl-r~al~eLe 230 (620)
T PRK14954 216 RKAQGSM-RDAQSILD 230 (620)
T ss_pred HHhCCCH-HHHHHHHH
Confidence 8888743 33333333
No 175
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.17 E-value=4.9e-10 Score=129.87 Aligned_cols=164 Identities=17% Similarity=0.266 Sum_probs=104.4
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE------
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 988 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el-------g~~fi------ 988 (1226)
.|..|+|+++++..|.-.+.. ....++||.|++|+|||+|+++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~--------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID--------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcC--------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 377899999999887554431 113579999999999999999999777 22221
Q ss_pred ---EEec-------------------Cccc-----cccccchH--HHH--------HHHHHHHHhcCCeEEEEccccccc
Q 000914 989 ---NISM-------------------SSIT-----SKWFGEGE--KYV--------KAVFSLASKIAPSVVFVDEVDSML 1031 (1226)
Q Consensus 989 ---~v~~-------------------s~L~-----s~~~Ge~e--~~I--------~~lF~~A~k~~PsILfIDEID~L~ 1031 (1226)
..+| .++- ...+|... ..+ .+++..| ..++||||||+.|
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L- 143 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLL- 143 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhC-
Confidence 0000 0111 12222211 110 1122222 2489999999988
Q ss_pred cCCCCCchHHHHHHHHHhhh--hhccCCcccCCCcEEEEEecCCCC-CCcHHHHhhccccccCCCCCH-HHHHHHHHHHH
Q 000914 1032 GRRENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1107 (1226)
Q Consensus 1032 ~~r~~~~~~e~l~~vl~~Ll--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~l~lPd~-eeR~eILk~lL 1107 (1226)
++..+..+..++++-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.+..|.. ++|.+|++...
T Consensus 144 ----~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 144 ----EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred ----CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 3344444444443321 222444433456899999998765 799999999998899988875 88999998743
No 176
>PHA02244 ATPase-like protein
Probab=99.16 E-value=4e-10 Score=130.54 Aligned_cols=136 Identities=19% Similarity=0.244 Sum_probs=87.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc---cchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF---GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1036 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~---Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1036 (1226)
.+|||+||||||||+||++||+.++.+|+.++.-.-..... .........-|..|.+ ..++||||||+.+ .
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a-----~ 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDAS-----I 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcC-----C
Confidence 46999999999999999999999999999998421001111 1111112223444433 4689999999977 3
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-----------CCCcHHHHhhccccccCCCCCHHHHHHHH
Q 000914 1037 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----------FDLDEAVVRRLPRRLMVNLPDAPNREKII 1103 (1226)
Q Consensus 1037 ~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p-----------~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL 1103 (1226)
+..+..+..++......+.+-....+.++.+|+|+|.+ ..|++++++|| ..+.++.|+ +....|.
T Consensus 194 p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~-~~E~~i~ 269 (383)
T PHA02244 194 PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDE-KIEHLIS 269 (383)
T ss_pred HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCc-HHHHHHh
Confidence 33344444444332222222222234679999999973 57899999999 579999998 3333443
No 177
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.16 E-value=1.6e-10 Score=132.39 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=100.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc--cccchH----------HHHHHHHHHHHhcCCeEEEEccc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVVFVDEV 1027 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~--~~Ge~e----------~~I~~lF~~A~k~~PsILfIDEI 1027 (1226)
++|||.||||||||++|+.+|..++.+++.+++...... .+|... ....+.+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999998654332 344311 112234555554 4588999999
Q ss_pred cccccCCCCCchHHHHHHHHHh-hhhhccC--CcccCCCcEEEEEecCCCC------------CCcHHHHhhccccccCC
Q 000914 1028 DSMLGRRENPGEHEAMRKMKNE-FMVNWDG--LRTKDKERVLVLAATNRPF------------DLDEAVVRRLPRRLMVN 1092 (1226)
Q Consensus 1028 D~L~~~r~~~~~~e~l~~vl~~-Ll~~ldg--l~~k~~~~VlVIaTTN~p~------------~Ld~aLlrRF~~~I~l~ 1092 (1226)
|.. .+..+..+..+++. -...+.+ -.-..+..++||||+|+.+ .|++++++||-.++.++
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 976 34444555555542 1111221 1112335799999999853 57899999997778899
Q ss_pred CCCHHHHHHHHHHHHh
Q 000914 1093 LPDAPNREKIIRVILA 1108 (1226)
Q Consensus 1093 lPd~eeR~eILk~lL~ 1108 (1226)
.|+.++-.+|+.....
T Consensus 219 Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 219 YLEHDNEAAIVLAKAK 234 (327)
T ss_pred CCCHHHHHHHHHhhcc
Confidence 9999999999887643
No 178
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.15 E-value=2.4e-10 Score=132.39 Aligned_cols=197 Identities=17% Similarity=0.173 Sum_probs=117.6
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-----
Q 000914 927 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----- 998 (1226)
Q Consensus 927 ~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~----- 998 (1226)
+|....++.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 2 iG~S~~m~~~~~~~~~~------------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRL------------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 45555566665555421 1123569999999999999999998766 579999999875332
Q ss_pred cccchH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEec
Q 000914 999 WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1071 (1226)
Q Consensus 999 ~~Ge~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTT 1071 (1226)
.||... ....++|..|. .++||||||+.| +...+..+.++++.-.....|-....+.++.||++|
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at 141 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATA-----SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCAT 141 (329)
T ss_pred HhccccccccCcccccCCchhhCC---CCEEEeCChHhC-----CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEec
Confidence 222110 01122344444 489999999998 444455555555433222222222234678999999
Q ss_pred CCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhc----ccC--Chhc---HHHHHHHcCCCcHH
Q 000914 1072 NRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----ELA--SDVD---LEGIANMADGYSGS 1131 (1226)
Q Consensus 1072 N~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k~----~l~--~dvd---l~~LA~~TeGySgs 1131 (1226)
+.. ..+.+.+..||. .+.|.+|...+|.+ ++++++.+. +.. ..+. +..|....=.-+.+
T Consensus 142 ~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvr 220 (329)
T TIGR02974 142 NADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVR 220 (329)
T ss_pred hhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHH
Confidence 753 245567777883 57788888888765 444554432 111 1233 33333333233558
Q ss_pred HHHHHHHHHHhhh
Q 000914 1132 DLKNLCVTAAHCP 1144 (1226)
Q Consensus 1132 DL~~L~~~Aa~~a 1144 (1226)
+|++++++|+..+
T Consensus 221 EL~n~i~~~~~~~ 233 (329)
T TIGR02974 221 ELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888877654
No 179
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.13 E-value=5.5e-10 Score=139.61 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=109.3
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------------------
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------ 983 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el------------------ 983 (1226)
.|.+|+|++.++..|.-.+.. ....+|||.|++|||||++|++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~--------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD--------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC--------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 377899999999887654432 112479999999999999999999887
Q ss_pred -----------------CCcEEEEecCccccccccch--HHHH--------HHHHHHHHhcCCeEEEEccccccccCCCC
Q 000914 984 -----------------GANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEVDSMLGRREN 1036 (1226)
Q Consensus 984 -----------------g~~fi~v~~s~L~s~~~Ge~--e~~I--------~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1036 (1226)
..+|+.+.+.......+|.. +..+ .+++..| ..+|||||||+.| +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-----~ 139 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-----D 139 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-----C
Confidence 35677766654444444432 1111 1122222 2379999999988 3
Q ss_pred CchHHHHHHHHHhhh--hhccCCcccCCCcEEEEEecCCC-CCCcHHHHhhccccccCCCCC-HHHHHHHHHHHHh
Q 000914 1037 PGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLPD-APNREKIIRVILA 1108 (1226)
Q Consensus 1037 ~~~~e~l~~vl~~Ll--~~ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRF~~~I~l~lPd-~eeR~eILk~lL~ 1108 (1226)
...+..+..++++-. ...+|.....+.+++||+|+|.. ..|.++++.||+..+.++.|. .++|.++++..+.
T Consensus 140 ~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 140 DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 334444444444332 22334433445779999999964 468899999999778777664 6778888876543
No 180
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.13 E-value=3.3e-10 Score=131.02 Aligned_cols=200 Identities=19% Similarity=0.180 Sum_probs=121.8
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc--
Q 000914 923 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-- 997 (1226)
Q Consensus 923 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s-- 997 (1226)
+++++|....++.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 567888888888887777531 1223569999999999999999998765 47999999987632
Q ss_pred ---ccccchHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEE
Q 000914 998 ---KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1067 (1226)
Q Consensus 998 ---~~~Ge~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlV 1067 (1226)
.+||.... .....|..|. .++|||||||.| +...+..+..+++.-.....+-....+.++.|
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~Ri 144 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATA-----PMLVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccC---CCeEEeCChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 22332110 0122344333 489999999998 33344444444433221111111122346899
Q ss_pred EEecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhc----ccC--ChhcHHHHHHHcC---C
Q 000914 1068 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----ELA--SDVDLEGIANMAD---G 1127 (1226)
Q Consensus 1068 IaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k~----~l~--~dvdl~~LA~~Te---G 1127 (1226)
|++|+.. ..+.+.+..|| ..+.|.+|...+|.+ ++++++.+. +.. ..++-+.+..+.. .
T Consensus 145 I~~s~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WP 223 (326)
T PRK11608 145 VCATNADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWP 223 (326)
T ss_pred EEeCchhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCC
Confidence 9998763 35667777788 357788888888855 455555432 111 1233333333322 2
Q ss_pred CcHHHHHHHHHHHHhh
Q 000914 1128 YSGSDLKNLCVTAAHC 1143 (1226)
Q Consensus 1128 ySgsDL~~L~~~Aa~~ 1143 (1226)
-+.++|++++++|+..
T Consensus 224 GNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 224 GNIRELKNVVERSVYR 239 (326)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 3557888888887754
No 181
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.10 E-value=2.6e-10 Score=101.62 Aligned_cols=67 Identities=31% Similarity=0.486 Sum_probs=59.1
Q ss_pred EEEeccCccceEecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeecCCCceEEeeCCCEEEEc
Q 000914 154 FTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (1226)
Q Consensus 154 ~t~G~~~~cd~~~~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gdei~f~ 224 (1226)
|+|||+..||+.|+++.+|..||.|...+. ..++|++. +.||| +|||+.+.++..+.|..||+|.|+
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt-~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGT-FVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-E-EETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcE-EECCEEcCCCCEEECCCCCEEEcC
Confidence 799999999999999999999999997744 33899996 68898 799999999999999999999985
No 182
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=8.7e-11 Score=134.69 Aligned_cols=111 Identities=23% Similarity=0.349 Sum_probs=98.3
Q ss_pred CCceeeecccCCCCceeEecceEEEeccCccceEecCCCCCccceEEEEe----------e-cCCcceEEEEEecCcceE
Q 000914 132 IPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRI----------E-NGGPSGALLEITGGKGEV 200 (1226)
Q Consensus 132 ~pW~~L~s~~~~~p~~~i~~~~~t~G~~~~cd~~~~d~~~s~~~c~l~~~----------~-~~g~~~a~le~~~~~G~v 200 (1226)
.||+||+-..-..+++.+.+++|||||+..||+.++.+.+|+.|-++... . .+....+||+|+++|||
T Consensus 44 ~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT- 122 (475)
T KOG0615|consen 44 KPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGT- 122 (475)
T ss_pred cchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcc-
Confidence 38999999999999999999999999999999999999999988855433 2 23455899999999999
Q ss_pred EECCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCcccCCC
Q 000914 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAA 243 (1226)
Q Consensus 201 ~vNg~~~~k~~~~~L~~gdei~f~~~~~~ayifq~l~~~~~~~ 243 (1226)
+||-..++||.+-.|+|||||.++.+.+++++|.+++.+....
T Consensus 123 ~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~d~~~~ 165 (475)
T KOG0615|consen 123 FVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSRDSSKV 165 (475)
T ss_pred cccHhHhhccccccccCCCEEEeccchhheeeeecccchhccC
Confidence 7999999999999999999999999999999999986655333
No 183
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=8e-10 Score=137.53 Aligned_cols=182 Identities=22% Similarity=0.384 Sum_probs=138.2
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 991 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v~ 991 (1226)
.++-++|.++-++++.+.+.. +..++-+|.|+||+|||.++..+|... +..++.++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 456789999888888887762 223567999999999999999999886 56788899
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch-HHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000914 992 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVL 1068 (1226)
Q Consensus 992 ~s~L~--s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~e~l~~vl~~Ll~~ldgl~~k~~~~VlVI 1068 (1226)
+..+. .+|-|+.|..++.+.....+..+.||||||||.+.+.....+. ..+.+-+.-.| .++.+.+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL----------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL----------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH----------hcCCeEEE
Confidence 88775 3688999999999999999988999999999999876654332 22222222222 23668888
Q ss_pred EecCC-----CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-----ChhcHHHHHHHcCCC
Q 000914 1069 AATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1128 (1226)
Q Consensus 1069 aTTN~-----p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-----~dvdl~~LA~~TeGy 1128 (1226)
|+|.. ...-|.++-||| ..|.+.-|+.++-..||+-+-.++... .|..+...+.++..|
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 88853 346789999999 689999999999999999877663322 455566666666655
No 184
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=2.6e-09 Score=132.82 Aligned_cols=183 Identities=20% Similarity=0.262 Sum_probs=129.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 985 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~-------------- 985 (1226)
..+|++|+|++.+++.|...+.. .+.++.+|||||+|+|||++|+.+|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 46899999999999999998762 223456999999999999999999998853
Q ss_pred -----------cEEEEecCccccccccchHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchHHHHHHHHHhh
Q 000914 986 -----------NFINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1050 (1226)
Q Consensus 986 -----------~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~l~~vl~~L 1050 (1226)
+++.+++.. ......++.+...+...+ .-|++|||+|.|. ....+.|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naL 141 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAF 141 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHH
Confidence 233333321 011334666665554322 3599999999882 1233445
Q ss_pred hhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCc
Q 000914 1051 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1129 (1226)
Q Consensus 1051 l~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGyS 1129 (1226)
+..++.. +..+++|.+|+.+..|-+.+++|+ ..+.|..++.++...+++.++.+.++. ++..+..|+..+.| +
T Consensus 142 LK~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-d 215 (614)
T PRK14971 142 LKTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-G 215 (614)
T ss_pred HHHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 5555442 244667777777789999999998 679999999999999999998887765 44557888888866 4
Q ss_pred HHHHHHHHHH
Q 000914 1130 GSDLKNLCVT 1139 (1226)
Q Consensus 1130 gsDL~~L~~~ 1139 (1226)
.+++.++++.
T Consensus 216 lr~al~~Lek 225 (614)
T PRK14971 216 MRDALSIFDQ 225 (614)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 185
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.09 E-value=5.9e-10 Score=136.08 Aligned_cols=202 Identities=20% Similarity=0.275 Sum_probs=125.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 989 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~e-----------lg~~fi~ 989 (1226)
.+|++|+|....++.+.+.+.. + ......|||+|++||||+++|++|.+. .+.+|+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~-----A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------Y-----ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 3688899999988888887753 1 112357999999999999999999887 3679999
Q ss_pred EecCcccc-----ccccchHH--------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccC
Q 000914 990 ISMSSITS-----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1056 (1226)
Q Consensus 990 v~~s~L~s-----~~~Ge~e~--------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldg 1056 (1226)
+||+.+.. ..||..+. .-..+|+.|.. +.||||||+.| +...|..+.+++++-....-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 99987532 23332211 11235555544 89999999998 444555555555443222222
Q ss_pred CcccCCCcEEEEEecCCCC-------CCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhc----ccC-ChhcH--
Q 000914 1057 LRTKDKERVLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----ELA-SDVDL-- 1118 (1226)
Q Consensus 1057 l~~k~~~~VlVIaTTN~p~-------~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k~----~l~-~dvdl-- 1118 (1226)
-....+.++.||++|+..- .+.+.+..|+ ..+.+.+|...+|.+ ++++++.+. +.. ....+
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 434 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQG 434 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 2222245689999997641 2333444566 467888999888865 555666542 111 11111
Q ss_pred -----HHHHHHcCCCcHHHHHHHHHHHHhh
Q 000914 1119 -----EGIANMADGYSGSDLKNLCVTAAHC 1143 (1226)
Q Consensus 1119 -----~~LA~~TeGySgsDL~~L~~~Aa~~ 1143 (1226)
..|....=.-+.++|++++++++..
T Consensus 435 ~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 435 LQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 1111111122558999999988763
No 186
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.08 E-value=4.2e-10 Score=137.38 Aligned_cols=202 Identities=22% Similarity=0.286 Sum_probs=125.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 997 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s 997 (1226)
.+|++|+|....++.+.+.+.. + ......|||+|++||||+++|++|.+.. +.+|+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~-----A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------Y-----ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 5688999999988888887753 1 1123579999999999999999998765 67999999987632
Q ss_pred -----ccccchHH--------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCc
Q 000914 998 -----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1064 (1226)
Q Consensus 998 -----~~~Ge~e~--------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~ 1064 (1226)
..+|..+. ....+|+.|.. +.||||||+.| +...|..+.+++++-....-|-....+.+
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 23332111 12235555544 89999999998 44455555555554322221211222356
Q ss_pred EEEEEecCCCC-------CCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhcc----cC-ChhcHHH-------H
Q 000914 1065 VLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA-SDVDLEG-------I 1121 (1226)
Q Consensus 1065 VlVIaTTN~p~-------~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k~~----l~-~dvdl~~-------L 1121 (1226)
+.+|++|+..- .+.+.+..|+ ..+.+.+|...+|.+ ++++++.+.. +. +...+.. |
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L 427 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPL 427 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHH
Confidence 79999997641 2333444455 357788898888765 5555555431 11 1111222 2
Q ss_pred HHHcCCCcHHHHHHHHHHHHhh
Q 000914 1122 ANMADGYSGSDLKNLCVTAAHC 1143 (1226)
Q Consensus 1122 A~~TeGySgsDL~~L~~~Aa~~ 1143 (1226)
....=.-+.++|++++++++..
T Consensus 428 ~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 428 QRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HhCCCCchHHHHHHHHHHHHHh
Confidence 2222122558888888888754
No 187
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.08 E-value=2.8e-10 Score=139.79 Aligned_cols=210 Identities=20% Similarity=0.226 Sum_probs=128.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 996 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~ 996 (1226)
..+|++++|....++.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 357889999999988888877631 1223569999999999999999999886 5799999998763
Q ss_pred cc-----cccchHHH-------HHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCc
Q 000914 997 SK-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1064 (1226)
Q Consensus 997 s~-----~~Ge~e~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~ 1064 (1226)
.. .+|..... ..+.|..| ..++||||||+.| +...+..+.+++++-.....+-....+.+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----SPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----CHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 32 12211100 01123333 3489999999998 33444444444433221111111112346
Q ss_pred EEEEEecCCC-------CCCcHHHHhhccccccCCCCCHHHHH----HHHHHHHhhcc----c---CChhcHHHHHHHcC
Q 000914 1065 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEE----L---ASDVDLEGIANMAD 1126 (1226)
Q Consensus 1065 VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~----eILk~lL~k~~----l---~~dvdl~~LA~~Te 1126 (1226)
+.+|++|+.. ..+.+.+..|+ ..+.+.+|...+|. .|+++++.+.. . .++..+..|....=
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~W 410 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRI-NVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKW 410 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHh-cCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCC
Confidence 8999998753 24556666677 35677778776664 45666665422 1 12233444444332
Q ss_pred CCcHHHHHHHHHHHHhhhhHHHHH
Q 000914 1127 GYSGSDLKNLCVTAAHCPIREILE 1150 (1226)
Q Consensus 1127 GySgsDL~~L~~~Aa~~aireli~ 1150 (1226)
.-+.++|+++++.|+..+-...+.
T Consensus 411 PGNvrEL~~v~~~a~~~~~~~~I~ 434 (534)
T TIGR01817 411 PGNVRELENCLERTATLSRSGTIT 434 (534)
T ss_pred CChHHHHHHHHHHHHHhCCCCccc
Confidence 336689999999888654443333
No 188
>PRK09087 hypothetical protein; Validated
Probab=99.07 E-value=4.1e-09 Score=116.07 Aligned_cols=137 Identities=19% Similarity=0.221 Sum_probs=94.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1039 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1039 (1226)
+.++|+||+|+|||+|+++++...++.++.. ..+.. .++..... .+|+|||++.+. ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCC------CC
Confidence 3599999999999999999998876654433 22111 11111111 589999999761 22
Q ss_pred HHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC--C-CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhcccC-
Q 000914 1040 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--D-LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA- 1113 (1226)
Q Consensus 1040 ~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~--~-Ld~aLlrRF~--~~I~l~lPd~eeR~eILk~lL~k~~l~- 1113 (1226)
++.+..+++.+.. .++.+||+++..|. . ..+.+++||. .++.+..|+.++|.++++..+....+.
T Consensus 103 ~~~lf~l~n~~~~---------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVRQ---------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHHh---------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4455556555542 13456666665543 2 3578999984 688999999999999999999886554
Q ss_pred ChhcHHHHHHHcCC
Q 000914 1114 SDVDLEGIANMADG 1127 (1226)
Q Consensus 1114 ~dvdl~~LA~~TeG 1127 (1226)
++..++.|+....|
T Consensus 174 ~~ev~~~La~~~~r 187 (226)
T PRK09087 174 DPHVVYYLVSRMER 187 (226)
T ss_pred CHHHHHHHHHHhhh
Confidence 66668888888764
No 189
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.07 E-value=7.7e-09 Score=121.63 Aligned_cols=168 Identities=20% Similarity=0.317 Sum_probs=115.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccC
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1033 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1033 (1226)
.+.++||||.|.|||+|++|++++. +..++++....++..++......-..-|..-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4569999999999999999999887 34577777766655443332222233455555 5579999999998654
Q ss_pred CCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCC---CcHHHHhhccc--cccCCCCCHHHHHHHHHHHHh
Q 000914 1034 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILA 1108 (1226)
Q Consensus 1034 r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~~--~I~l~lPd~eeR~eILk~lL~ 1108 (1226)
.. .++....+++.+... ++-+|+.+-..|.. +.+.+++||.. ++.+..|+.+.|..||+....
T Consensus 191 ~~---~qeefFh~FN~l~~~---------~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ER---TQEEFFHTFNALLEN---------GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hh---HHHHHHHHHHHHHhc---------CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 32 366666777766522 33455555555554 55899999864 678899999999999999877
Q ss_pred hcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000914 1109 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1141 (1226)
Q Consensus 1109 k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa 1141 (1226)
..++. ++..+..+|..... +.++|..++....
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~ 291 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLD 291 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHH
Confidence 76655 55567778877653 4556655554443
No 190
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.06 E-value=1.5e-09 Score=116.88 Aligned_cols=187 Identities=24% Similarity=0.329 Sum_probs=128.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CC----cEEEEecCc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GA----NFINISMSS 994 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el-g~----~fi~v~~s~ 994 (1226)
...+.||+|.++..+.|.-.... + . ..+++|.||||||||+-+.++|+++ |- -+.++|.++
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~----------g--n--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE----------G--N--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc----------C--C--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 34678999999999998776542 2 1 2489999999999999999999998 32 356777766
Q ss_pred cccccccchHHHHHHHHHHHH-hcCC---eEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEe
Q 000914 995 ITSKWFGEGEKYVKAVFSLAS-KIAP---SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1070 (1226)
Q Consensus 995 L~s~~~Ge~e~~I~~lF~~A~-k~~P---sILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaT 1070 (1226)
-.+ ++.....++ .|..-+ ..+| .||+|||.|++ ..+.|.++++.++-.- ....+..+
T Consensus 89 eRG--IDvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFala 149 (333)
T KOG0991|consen 89 ERG--IDVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFALA 149 (333)
T ss_pred ccc--cHHHHHHHH-HHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhhhh
Confidence 322 111122232 333222 2233 49999999999 4567888888876442 33577788
Q ss_pred cCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 000914 1071 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1140 (1226)
Q Consensus 1071 TN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~A 1140 (1226)
+|..+.+=+.+.+|+ -.+.+...+..+...-+..+.+.+++. .+.-++.+....+|-....|.+|....
T Consensus 150 CN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 150 CNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTV 219 (333)
T ss_pred hcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHh
Confidence 999888888899988 456666666666555555555555544 556678888888887777777775543
No 191
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.05 E-value=4.7e-10 Score=140.59 Aligned_cols=203 Identities=20% Similarity=0.249 Sum_probs=124.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc-
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 996 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~- 996 (1226)
.+|++++|.....+.+.+.+... ......|||+|++||||+++|++|.+.. +.+|+.++|..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA------------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 46889999888888777766531 1123469999999999999999998876 4799999998763
Q ss_pred ----cccccch----HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000914 997 ----SKWFGEG----EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1068 (1226)
Q Consensus 997 ----s~~~Ge~----e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVI 1068 (1226)
+.++|.. .......|+.| ..++||||||+.| +...+..+.+++++-....-+-....+.++.||
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 2233321 00011134333 3489999999998 444455555554432211111111122468899
Q ss_pred EecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhcc------c-CChhcHHHHHHHcCCCcH
Q 000914 1069 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE------L-ASDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1069 aTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k~~------l-~~dvdl~~LA~~TeGySg 1130 (1226)
+||+.. ..+.+.+.-|+ ..+.|.+|...+|.+ +++.++.+.. + .++..+..|....=.-+.
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv 540 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND 540 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChH
Confidence 999863 23444555566 467888899888854 4555554421 1 123333444443323356
Q ss_pred HHHHHHHHHHHhhh
Q 000914 1131 SDLKNLCVTAAHCP 1144 (1226)
Q Consensus 1131 sDL~~L~~~Aa~~a 1144 (1226)
++|+++++.|+..+
T Consensus 541 reL~~~l~~~~~~~ 554 (638)
T PRK11388 541 FELRSVIENLALSS 554 (638)
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999887654
No 192
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.05 E-value=8.9e-10 Score=127.51 Aligned_cols=157 Identities=25% Similarity=0.377 Sum_probs=109.1
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--cccccch
Q 000914 926 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGEG 1003 (1226)
Q Consensus 926 I~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~--s~~~Ge~ 1003 (1226)
+.|.++++..+...+.. ..++||.||||||||+||+++|..++.+|+.+.|..-. ++.+|..
T Consensus 26 ~~g~~~~~~~~l~a~~~----------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLA----------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHc----------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 55666666655544431 25799999999999999999999999999999987422 2223322
Q ss_pred HHHHH----H--------HHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCc-ccCCCcEEEEEe
Q 000914 1004 EKYVK----A--------VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAA 1070 (1226)
Q Consensus 1004 e~~I~----~--------lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~-~k~~~~VlVIaT 1070 (1226)
.-... . +|.... +|+|+|||++. ++..+..+..++++....+.+.. ..-+..++||+|
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT 160 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRA-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIAT 160 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccc----eEEEEeccccC-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEc
Confidence 11110 0 111111 49999999865 55566777777777776777766 555678999999
Q ss_pred cC-----CCCCCcHHHHhhccccccCCCC-CHHHHHHHHHHHH
Q 000914 1071 TN-----RPFDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVIL 1107 (1226)
Q Consensus 1071 TN-----~p~~Ld~aLlrRF~~~I~l~lP-d~eeR~eILk~lL 1107 (1226)
+| ....|++++++||...+.++.| ...+...++....
T Consensus 161 ~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 161 QNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred cCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 99 4567899999999889999999 4444555544443
No 193
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.05 E-value=1.7e-09 Score=136.78 Aligned_cols=205 Identities=20% Similarity=0.273 Sum_probs=127.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 997 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s 997 (1226)
..|++++|....++.+.+.+.. + ......|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~-------~-----a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEM-------V-----AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 4678899999888888776653 1 1123579999999999999999998865 67999999987532
Q ss_pred -----ccccchH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcE
Q 000914 998 -----KWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1065 (1226)
Q Consensus 998 -----~~~Ge~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~V 1065 (1226)
..+|... ......|..|. .++||||||+.| +...+..+.+++++-.....|-......++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 2333211 11123454444 489999999998 434455555554433222212222223578
Q ss_pred EEEEecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhc----cc----CChhcHHHHHHHcC
Q 000914 1066 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL----ASDVDLEGIANMAD 1126 (1226)
Q Consensus 1066 lVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k~----~l----~~dvdl~~LA~~Te 1126 (1226)
.+|++|+.. ..+...+..|+ ..+.|.+|...+|.+ ++++++.+. +. .+...+..|....=
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~W 591 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEW 591 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 999999764 23344455566 357788999888866 455555442 11 12233344433332
Q ss_pred CCcHHHHHHHHHHHHhhhhH
Q 000914 1127 GYSGSDLKNLCVTAAHCPIR 1146 (1226)
Q Consensus 1127 GySgsDL~~L~~~Aa~~air 1146 (1226)
-.+.++|++++++|+..+-.
T Consensus 592 PGNvrEL~~~i~~a~~~~~~ 611 (686)
T PRK15429 592 PGNVRELENVIERAVLLTRG 611 (686)
T ss_pred CCcHHHHHHHHHHHHHhCCC
Confidence 33568999999888865433
No 194
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.04 E-value=1.2e-09 Score=133.65 Aligned_cols=204 Identities=17% Similarity=0.232 Sum_probs=127.3
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 998 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~ 998 (1226)
.+.+++|....++.+.+.+.. + ......|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~-------~-----a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV-------V-----AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 356788998888888887763 1 1223579999999999999999999875 579999999876432
Q ss_pred -----cccchHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEE
Q 000914 999 -----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1066 (1226)
Q Consensus 999 -----~~Ge~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~Vl 1066 (1226)
.||.... .....|..|. .++|||||||.| +...+..+.++++.-....-|-....+.++.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----PLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----CHHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 2332111 0112354444 489999999998 3344444444444322111111112235789
Q ss_pred EEEecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhcc----c-C---ChhcHHHHHHHcCC
Q 000914 1067 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L-A---SDVDLEGIANMADG 1127 (1226)
Q Consensus 1067 VIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k~~----l-~---~dvdl~~LA~~TeG 1127 (1226)
||++|+.. ..+.+.+..|+ ..+.|.+|...+|.+ ++++++.+.. . . +...+..|....=-
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 403 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWP 403 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999864 24556666677 357788899888865 4445554421 1 1 22223333333323
Q ss_pred CcHHHHHHHHHHHHhhhhH
Q 000914 1128 YSGSDLKNLCVTAAHCPIR 1146 (1226)
Q Consensus 1128 ySgsDL~~L~~~Aa~~air 1146 (1226)
.+.++|++++++|+..+..
T Consensus 404 GNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 404 GNVRELEHVISRAALLARA 422 (509)
T ss_pred CcHHHHHHHHHHHHHhcCC
Confidence 4668999999998875543
No 195
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.04 E-value=5.7e-09 Score=113.24 Aligned_cols=191 Identities=21% Similarity=0.289 Sum_probs=134.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 996 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~ 996 (1226)
.+.+.+|.|.+.+++.|.+.... |.+ ..|.++|||+|..||||++|++|+.++. +..+|+|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 36788999999999999776543 333 3477899999999999999999998887 6778888876653
Q ss_pred cccccchHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000914 997 SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 997 s~~~Ge~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
.+-.++...+.. ..-|||+|++-- ..+ .. ....|...++|-....+.+|+|.||+|+.+
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLSF------e~g-d~----~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLSF------EEG-DD----AYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCCC------CCC-ch----HHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 234455555443 347999999841 111 11 123344556776666788999999999865
Q ss_pred CCcH----------------------HHHhhccccccCCCCCHHHHHHHHHHHHhhcccCC-hhc--HHHH--HHHcCCC
Q 000914 1076 DLDE----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVD--LEGI--ANMADGY 1128 (1226)
Q Consensus 1076 ~Ld~----------------------aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~-dvd--l~~L--A~~TeGy 1128 (1226)
.|.+ .+-.||+..+.|..++.++-.+|+..++++.++.- +.. .+++ |..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4442 23349999999999999999999999999987763 322 2332 3344466
Q ss_pred cHHHHHHHHHHH
Q 000914 1129 SGSDLKNLCVTA 1140 (1226)
Q Consensus 1129 SgsDL~~L~~~A 1140 (1226)
||+--.+.++..
T Consensus 266 SGR~A~QF~~~~ 277 (287)
T COG2607 266 SGRVAWQFIRDL 277 (287)
T ss_pred ccHhHHHHHHHH
Confidence 776555554443
No 196
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.03 E-value=1.2e-09 Score=103.68 Aligned_cols=97 Identities=26% Similarity=0.439 Sum_probs=82.5
Q ss_pred ceeeecccC--CCCceeEec-ceEEEeccCcc-ceEecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeecCC
Q 000914 134 WARLISQCS--QNSHLSMTG-AVFTVGHNRQC-DLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 209 (1226)
Q Consensus 134 W~~L~s~~~--~~p~~~i~~-~~~t~G~~~~c-d~~~~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k 209 (1226)
|+.|.++.. ....+.|.. ..|+|||+..| |+.|.|+.+|..||.|.....++ ..+++..+.||+ +|||+.+.+
T Consensus 1 ~~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~~--~~~~~~~s~~g~-~vn~~~~~~ 77 (102)
T cd00060 1 VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDGG--VVLIDLGSTNGT-FVNGQRVSP 77 (102)
T ss_pred CeEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCCC--EEEEECCCCCCe-EECCEECCC
Confidence 567777776 677888998 99999999999 99999999999999999764333 478899999999 699999999
Q ss_pred CceEEeeCCCEEEEccCCCeeEEee
Q 000914 210 DSQVVLRGGDELVFSPSGKHSYIFQ 234 (1226)
Q Consensus 210 ~~~~~L~~gdei~f~~~~~~ayifq 234 (1226)
+.++.|..||+|.|+. +.+.|.|+
T Consensus 78 ~~~~~l~~gd~i~ig~-~~~~~~~~ 101 (102)
T cd00060 78 GEPVRLRDGDVIRLGN-TSISFRFE 101 (102)
T ss_pred CCcEECCCCCEEEECC-eEEEEEEe
Confidence 8999999999999976 45555554
No 197
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=9.4e-09 Score=120.60 Aligned_cols=199 Identities=22% Similarity=0.302 Sum_probs=128.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEecCcccccc
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKW 999 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~-----~fi~v~~s~L~s~~ 999 (1226)
.+.+.++.++++..++.-.+. + . .|.+++|+|+||||||.+++.+++++.- .++++||..+.+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~-~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--E-RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--C-CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 478899999999888764333 1 2 3356999999999999999999999843 38999996643221
Q ss_pred ---------------ccch-HHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCC
Q 000914 1000 ---------------FGEG-EKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1062 (1226)
Q Consensus 1000 ---------------~Ge~-e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~ 1062 (1226)
.|.. ......+++.... ...-||+|||+|.|..+.. .++-.|...... ..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~----~~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGE----NK 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccc----cc
Confidence 1111 2233333333333 3457999999999964432 233333322222 24
Q ss_pred CcEEEEEecCCC---CCCcHHHHhhcc-ccccCCCCCHHHHHHHHHHHHhhc---ccCChhcHHHHHHHc---CCCcHHH
Q 000914 1063 ERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMA---DGYSGSD 1132 (1226)
Q Consensus 1063 ~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~l~lPd~eeR~eILk~lL~k~---~l~~dvdl~~LA~~T---eGySgsD 1132 (1226)
.++.+|+.+|.. +.+++.+.++|. ..|.|++.+.+|...|++...... ...++.-+..+|... .| ..+-
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ 233 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARK 233 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHH
Confidence 678999999876 477888888764 458999999999999999987652 222333444444333 33 3334
Q ss_pred HHHHHHHHHhhhhHH
Q 000914 1133 LKNLCVTAAHCPIRE 1147 (1226)
Q Consensus 1133 L~~L~~~Aa~~aire 1147 (1226)
...+|+.|+..|-++
T Consensus 234 aidilr~A~eiAe~~ 248 (366)
T COG1474 234 AIDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHHHhh
Confidence 446677777666544
No 198
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.02 E-value=4e-09 Score=128.94 Aligned_cols=175 Identities=23% Similarity=0.294 Sum_probs=105.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEE---EecCccccccc
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FIN---ISMSSITSKWF 1000 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~-fi~---v~~s~L~s~~~ 1000 (1226)
.|.|++.+|..|.-.+.--.. .....+...+...+|||+|+||||||++|+++++.+... |+. .++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~--~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH--KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc--cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 678999988777554432100 000111112233479999999999999999999987532 322 12222221111
Q ss_pred cc---hHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhc--cCCcccCCCcEEEEEecCCC
Q 000914 1001 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 1074 (1226)
Q Consensus 1001 Ge---~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~l--dgl~~k~~~~VlVIaTTN~p 1074 (1226)
.. .+..+ .+.+..| ..++++|||++.+ ++..+..+.+++++-...+ .|....-+.++.||||+|+.
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l-----~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKM-----DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhC-----CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 00 00000 1122223 3489999999988 3344455555544322211 34444445789999999975
Q ss_pred C-------------CCcHHHHhhcccccc-CCCCCHHHHHHHHHHHHhh
Q 000914 1075 F-------------DLDEAVVRRLPRRLM-VNLPDAPNREKIIRVILAK 1109 (1226)
Q Consensus 1075 ~-------------~Ld~aLlrRF~~~I~-l~lPd~eeR~eILk~lL~k 1109 (1226)
+ .|++++++||+..+. ++.|+.+.+.+|.++++..
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 2 699999999987544 4789999999999987754
No 199
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.02 E-value=1.2e-09 Score=133.70 Aligned_cols=206 Identities=22% Similarity=0.290 Sum_probs=125.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 996 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~ 996 (1226)
..+|++++|.....+.+.+.+.. + ......|||+|++||||+++|++|.... +.+|+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~-------~-----A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK-------L-----AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 45899999998887777766642 1 1122459999999999999999987665 4789999998764
Q ss_pred cc-----cccchH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCc
Q 000914 997 SK-----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1064 (1226)
Q Consensus 997 s~-----~~Ge~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~ 1064 (1226)
.. .||... ....++|+.|. .++||||||+.| +...|..+.++++.-...-.|-......+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----SPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----CHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 32 233211 11123455554 389999999998 44445555554443211111111112356
Q ss_pred EEEEEecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhh----ccc-CChhcHHHHHHHcC-C
Q 000914 1065 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EEL-ASDVDLEGIANMAD-G 1127 (1226)
Q Consensus 1065 VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k----~~l-~~dvdl~~LA~~Te-G 1127 (1226)
+.||++|+.. ..+.+.+..|+. .+.+.+|...+|.+ +++.++.+ .+. ...+..+.+..+.. .
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~ 418 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYG 418 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCC
Confidence 8899998753 235566777873 57888888888764 34444443 221 11233344443332 2
Q ss_pred C--cHHHHHHHHHHHHhhhhH
Q 000914 1128 Y--SGSDLKNLCVTAAHCPIR 1146 (1226)
Q Consensus 1128 y--SgsDL~~L~~~Aa~~air 1146 (1226)
| +.++|++++.+|+..+-.
T Consensus 419 WPGNvreL~nvl~~a~~~~~~ 439 (520)
T PRK10820 419 WPGNVRQLKNAIYRALTQLEG 439 (520)
T ss_pred CCCHHHHHHHHHHHHHHhCCC
Confidence 3 558888888888765433
No 200
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=1.1e-08 Score=117.74 Aligned_cols=172 Identities=18% Similarity=0.293 Sum_probs=115.4
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------cEEEEecC
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------NFINISMS 993 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~--------~fi~v~~s 993 (1226)
+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+-+ .++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 689999999999999887752 233467899999999999999999998733 22333221
Q ss_pred ccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEE
Q 000914 994 SITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1069 (1226)
Q Consensus 994 ~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIa 1069 (1226)
.+..+ .-..++.+...+.. ...-|++||++|.|- ....+.|+..++. .+..+++|.
T Consensus 69 --~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEe----pp~~t~~il 128 (313)
T PRK05564 69 --NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEE----PPKGVFIIL 128 (313)
T ss_pred --cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCCCeEEEE
Confidence 11111 12345555544332 234699999999882 1233455555554 234566666
Q ss_pred ecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 000914 1070 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1070 TTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySg 1130 (1226)
+|+.++.+.+++++|+ ..+.+..|+.++-..+++..+.. .++..+..++..+.|-.+
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHH
Confidence 7777899999999999 68999999998887777654431 234446667777766444
No 201
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=8.5e-09 Score=120.42 Aligned_cols=188 Identities=18% Similarity=0.151 Sum_probs=121.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEEE-e
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FINI-S 991 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~-------fi~v-~ 991 (1226)
...+++|+|++++.+.|...+.. .+.+..+||+||+|+|||++|+.+|+.+.+. .... .
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 35788999999999999998763 2344679999999999999999999998541 1100 1
Q ss_pred ---c-----------Cccc--cccccc---------hHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchHHH
Q 000914 992 ---M-----------SSIT--SKWFGE---------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEA 1042 (1226)
Q Consensus 992 ---~-----------s~L~--s~~~Ge---------~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~e~ 1042 (1226)
| +++. ..-.+. .-..++.+..... ....-||+|||+|.| +
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----~------ 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----N------ 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----C------
Confidence 1 0110 000000 1123333333222 223469999999998 2
Q ss_pred HHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHH
Q 000914 1043 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1122 (1226)
Q Consensus 1043 l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA 1122 (1226)
....+.|+..++.. +.++++|..|+.++.+.+.+++|+ ..+.++.|+.++-..+++....... .++..+..++
T Consensus 155 -~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 155 -RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred -HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 12234455555442 244566666777888999999999 7999999999999999988543322 2344467788
Q ss_pred HHcCCCcHHHHHHHHHH
Q 000914 1123 NMADGYSGSDLKNLCVT 1139 (1226)
Q Consensus 1123 ~~TeGySgsDL~~L~~~ 1139 (1226)
..+.|.....+ ++.+.
T Consensus 228 ~~s~G~pr~Al-~ll~~ 243 (351)
T PRK09112 228 QRSKGSVRKAL-LLLNY 243 (351)
T ss_pred HHcCCCHHHHH-HHHhc
Confidence 88877655444 44433
No 202
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.96 E-value=2.2e-08 Score=113.58 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=83.9
Q ss_pred CeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC------------CCCCcHHHHhhcc
Q 000914 1019 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRLP 1086 (1226)
Q Consensus 1019 PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF~ 1086 (1226)
|+||||||+|.| +-..-.++++.+.. +-.+ +||.+||+ |+-++..++.|.
T Consensus 292 pGVLFIDEvHmL-----DIE~FsFlnrAlEs-----------e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHML-----DIECFSFLNRALES-----------ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhh-----hHHHHHHHHHHhhc-----------ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 789999999877 21122222222221 1123 55566665 788999999998
Q ss_pred ccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccC
Q 000914 1087 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1165 (1226)
Q Consensus 1087 ~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ek~~~~~e~~~ 1165 (1226)
.+|...+.+.++.++|++.......+. ++..++.|+..-.--+-+--.+|+.-|...|.++
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------------------ 415 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------------------ 415 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------------------
Confidence 678888889999999999998877655 5666788887766555555555555444444332
Q ss_pred CCCCCCccccccccHHHHHHHHHHhc
Q 000914 1166 SPPLYSSVDVRPLKMDDFKYAHEQVC 1191 (1226)
Q Consensus 1166 ~~~~~~~~d~r~Lt~eDF~~Al~~v~ 1191 (1226)
....+..+|++.|.+-+.
T Consensus 416 --------g~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 416 --------GSKRVEVEDVERAKELFL 433 (450)
T ss_pred --------CCCeeehhHHHHHHHHHh
Confidence 113577788888866543
No 203
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=1.3e-08 Score=119.57 Aligned_cols=181 Identities=20% Similarity=0.196 Sum_probs=118.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-----------
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI----------- 988 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi----------- 988 (1226)
..++++|+|++++++.|.+.+.. .+.+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 45789999999999999988763 234567999999999999999999998832110
Q ss_pred E---E-ec-----------Cccc--cc-cccc--------hHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCc
Q 000914 989 N---I-SM-----------SSIT--SK-WFGE--------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPG 1038 (1226)
Q Consensus 989 ~---v-~~-----------s~L~--s~-~~Ge--------~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~ 1038 (1226)
. + .| +++. .. +.+. .-..++.+...+. ...+.||+|||+|.+ +
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-----~-- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-----N-- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----C--
Confidence 0 0 00 1110 00 0000 1123454444332 235679999999988 2
Q ss_pred hHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccCChhcH
Q 000914 1039 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL 1118 (1226)
Q Consensus 1039 ~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl 1118 (1226)
....+.|+..++. .+..+++|.+|+.++.+.+.+++|+ ..+.|+.|+.++-.+++...... ..+..+
T Consensus 155 -----~~aanaLLK~LEe----pp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEE----PPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhc----CCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 2233455555543 2245677788888889999999998 78999999999988888775321 222333
Q ss_pred HHHHHHcCCCcHHHH
Q 000914 1119 EGIANMADGYSGSDL 1133 (1226)
Q Consensus 1119 ~~LA~~TeGySgsDL 1133 (1226)
..++..+.|-.+..+
T Consensus 222 ~~l~~~s~Gsp~~Al 236 (365)
T PRK07471 222 AALAALAEGSVGRAL 236 (365)
T ss_pred HHHHHHcCCCHHHHH
Confidence 567777777544433
No 204
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.96 E-value=6.2e-09 Score=129.09 Aligned_cols=142 Identities=19% Similarity=0.305 Sum_probs=96.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccchH--HHHH--------HHHHHHHhcCCeEEEEcc
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK--------AVFSLASKIAPSVVFVDE 1026 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~elg--~~fi~v~~s~L~s~~~Ge~e--~~I~--------~lF~~A~k~~PsILfIDE 1026 (1226)
..+|||.|+||||||++|++|+..+. .+|+.+.........+|... ..+. +++..| ..+||||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccc
Confidence 35799999999999999999999875 36888876433333444321 0000 011122 237999999
Q ss_pred ccccccCCCCCchHHHHHHHHHhhhhhc--cCCcccCCCcEEEEEecCCCC---CCcHHHHhhccccccCC-CCCHHHHH
Q 000914 1027 VDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRRLMVN-LPDAPNRE 1100 (1226)
Q Consensus 1027 ID~L~~~r~~~~~~e~l~~vl~~Ll~~l--dgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~~I~l~-lPd~eeR~ 1100 (1226)
|+.+ ++..+..+..++++-...+ +|.....+.+++||+|+|..+ .|.++++.||...+.+. +|+.++|.
T Consensus 93 i~rl-----~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~ 167 (589)
T TIGR02031 93 ANLL-----DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRV 167 (589)
T ss_pred hhhC-----CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHH
Confidence 9988 4444555555554433222 244444456799999999865 79999999999766664 56788899
Q ss_pred HHHHHHHh
Q 000914 1101 KIIRVILA 1108 (1226)
Q Consensus 1101 eILk~lL~ 1108 (1226)
+|++.++.
T Consensus 168 eil~~~~~ 175 (589)
T TIGR02031 168 EIVRRERC 175 (589)
T ss_pred HHHHHHHH
Confidence 99988763
No 205
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.95 E-value=3.7e-10 Score=121.71 Aligned_cols=46 Identities=43% Similarity=0.666 Sum_probs=36.5
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el 983 (1226)
.|.+|.|++.+|..|.-... + ..+|||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G-----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G-----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C-----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C-----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999977664 1 2689999999999999999998765
No 206
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.94 E-value=1.4e-08 Score=118.25 Aligned_cols=167 Identities=24% Similarity=0.348 Sum_probs=110.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcE------
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANF------ 987 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg-------~~f------ 987 (1226)
..|.-+.|++..+..|.-... ...-.|+||.|+.|||||+++|+||.-+. ++|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 456788999999888744322 22235899999999999999999998882 221
Q ss_pred ---------------------------EEEecCccccccccc--hHHHHHH--------HHHHHHhcCCeEEEEcccccc
Q 000914 988 ---------------------------INISMSSITSKWFGE--GEKYVKA--------VFSLASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 988 ---------------------------i~v~~s~L~s~~~Ge--~e~~I~~--------lF~~A~k~~PsILfIDEID~L 1030 (1226)
+.+.........+|. .++.++. ++..|. .+||||||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An---RGIlYvDEvnlL 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN---RGILYVDEVNLL 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc---CCEEEEeccccc
Confidence 111000000111221 1122221 222222 289999999988
Q ss_pred ccCCCCCchHHHHHHHHHhh--hhhccCCcccCCCcEEEEEecCCC-CCCcHHHHhhccccccCCCC-CHHHHHHHHHHH
Q 000914 1031 LGRRENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVI 1106 (1226)
Q Consensus 1031 ~~~r~~~~~~e~l~~vl~~L--l~~ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRF~~~I~l~lP-d~eeR~eILk~l 1106 (1226)
....+..+..++.+- ....+|+....+.++++|||+|+. ..|-+-|+.||...+.+..| +.++|.+|+++.
T Consensus 157 -----~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~ 231 (423)
T COG1239 157 -----DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRR 231 (423)
T ss_pred -----cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHH
Confidence 333444555555553 455677777778899999999986 58889999999998888765 588999999887
Q ss_pred Hhh
Q 000914 1107 LAK 1109 (1226)
Q Consensus 1107 L~k 1109 (1226)
+.-
T Consensus 232 ~~f 234 (423)
T COG1239 232 LAF 234 (423)
T ss_pred HHh
Confidence 664
No 207
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.94 E-value=2.1e-10 Score=115.67 Aligned_cols=112 Identities=27% Similarity=0.429 Sum_probs=67.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc--ccccchH------HHHHHHHHHHHhcCCeEEEEcccccccc
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEGE------KYVKAVFSLASKIAPSVVFVDEVDSMLG 1032 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s--~~~Ge~e------~~I~~lF~~A~k~~PsILfIDEID~L~~ 1032 (1226)
+|||+||||||||+||+.+|+.++.+++.+.+..... +.+|... ......+..|.+ .+.|+|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 5899999999999999999999999999998865221 1111100 000011111111 5689999999876
Q ss_pred CCCCCchHHHHHHHHHhhhhhccCCc---------ccCCC------cEEEEEecCCCC----CCcHHHHhhc
Q 000914 1033 RRENPGEHEAMRKMKNEFMVNWDGLR---------TKDKE------RVLVLAATNRPF----DLDEAVVRRL 1085 (1226)
Q Consensus 1033 ~r~~~~~~e~l~~vl~~Ll~~ldgl~---------~k~~~------~VlVIaTTN~p~----~Ld~aLlrRF 1085 (1226)
+ ..+++.++..++.-. ..... .+.+|+|+|+.. .+++++++||
T Consensus 78 ---~-------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---P-------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---C-------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 1 223333333332111 00111 499999999988 9999999998
No 208
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.94 E-value=4.5e-09 Score=102.15 Aligned_cols=127 Identities=33% Similarity=0.468 Sum_probs=81.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCccccc--------------cccchHHHHHHHHHHHHhcCCeEE
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVV 1022 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~---fi~v~~s~L~s~--------------~~Ge~e~~I~~lF~~A~k~~PsIL 1022 (1226)
..++|+||||||||++++.+|..+... ++.+++...... ...........++..|+...+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 788887654321 122345567788999998888999
Q ss_pred EEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC-CCCCcHHHHhhccccccCCCC
Q 000914 1023 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNLP 1094 (1226)
Q Consensus 1023 fIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~-p~~Ld~aLlrRF~~~I~l~lP 1094 (1226)
||||++.+..... .............. .........+|+++|. ....+..+.+|++..+.+..+
T Consensus 83 iiDei~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ-----EALLLLLEELRLLL---LLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH-----HHHHHhhhhhHHHH---HHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999998842211 11100000000000 0012255788888886 445555566677776666543
No 209
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.94 E-value=1.1e-09 Score=115.33 Aligned_cols=128 Identities=20% Similarity=0.334 Sum_probs=80.5
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----
Q 000914 926 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---- 998 (1226)
Q Consensus 926 I~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~---- 998 (1226)
|+|.+..++.+.+.+... ...+..|||+|++||||+++|++|.+.. +.+|+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~------------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA------------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHH------------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH------------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhh
Confidence 355666666666655421 1123679999999999999999998876 579999999876432
Q ss_pred -cccchH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEe
Q 000914 999 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1070 (1226)
Q Consensus 999 -~~Ge~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaT 1070 (1226)
.||... .....+|..|.. ++||||||+.| ++..|..+.++++.-....-|-......+++||++
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred hhhccccccccccccccCCceeeccc---eEEeecchhhh-----HHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 233211 112367777776 99999999999 44556666666554433322322223468999999
Q ss_pred cCC
Q 000914 1071 TNR 1073 (1226)
Q Consensus 1071 TN~ 1073 (1226)
|+.
T Consensus 141 t~~ 143 (168)
T PF00158_consen 141 TSK 143 (168)
T ss_dssp ESS
T ss_pred cCc
Confidence 986
No 210
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.7e-09 Score=116.83 Aligned_cols=109 Identities=27% Similarity=0.432 Sum_probs=76.1
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cccc
Q 000914 926 IGALENVKDTLKELVMLPLQRPELFCK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG 1001 (1226)
Q Consensus 926 I~Gle~vk~~L~e~V~~pL~~pelf~k---~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s-~~~G 1001 (1226)
++|++..|+.|--++.. ++..+... ..+.-...+|||.||+|+|||+||+.+|+.++.||.--++..|.. .|+|
T Consensus 63 VIGQe~AKKvLsVAVYN--HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVYN--HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeehh--HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 67888887776444332 11111111 111112247999999999999999999999999999999988764 5788
Q ss_pred ch-HHHHHHHHHHH----HhcCCeEEEEccccccccCCCC
Q 000914 1002 EG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRREN 1036 (1226)
Q Consensus 1002 e~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~ 1036 (1226)
+. |..+..+++.| .+.+.+||||||||.+..+..+
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN 180 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSEN 180 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCC
Confidence 75 55566666655 2345699999999999866544
No 211
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.92 E-value=1.8e-08 Score=107.31 Aligned_cols=144 Identities=18% Similarity=0.201 Sum_probs=97.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHHH
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1013 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~elg~~------------------------fi~v~~s~L~s~~~Ge~e~~I~~lF~~ 1013 (1226)
.+..+||+||+|+|||++|+++++.+... +..+.... .. .....++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 44679999999999999999999997432 22221110 00 122455555555
Q ss_pred HHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccc
Q 000914 1014 ASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 1089 (1226)
Q Consensus 1014 A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I 1089 (1226)
+.. ....||+|||+|.|. ....+.|+..++.. +...++|.+|+.+..+.+++.+|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 543 234699999999882 11234455555442 234667777777789999999999 689
Q ss_pred cCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCC
Q 000914 1090 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGY 1128 (1226)
Q Consensus 1090 ~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGy 1128 (1226)
.+..|+.++..++++.. ++ ++..+..++..+.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGS 184 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCC
Confidence 99999999988888776 33 345577777777664
No 212
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.92 E-value=3.6e-08 Score=117.97 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=96.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecC-cccccccc
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFG 1001 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~--~fi~v~~s-~L~s~~~G 1001 (1226)
.|.|.+++++.+...+. ...+|||+||||||||++|++|+...+. +|..+.+. ......+|
T Consensus 21 ~i~gre~vI~lll~aal----------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHc----------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 46788888887766553 1257999999999999999999998743 44444332 11223334
Q ss_pred ch-HHHH--HHHHHHHHhc---CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC
Q 000914 1002 EG-EKYV--KAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 1002 e~-e~~I--~~lF~~A~k~---~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
.. -... .+-|...... ...+||+|||.++ ++..+..+..++++-....++...+-+.+++|++| |...
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LP 158 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELP 158 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCc
Confidence 21 0000 1223211111 2249999999866 55555666666655554444433333344555554 6422
Q ss_pred ---CCcHHHHhhccccccCCCCC-HHHHHHHHHHH
Q 000914 1076 ---DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 1106 (1226)
Q Consensus 1076 ---~Ld~aLlrRF~~~I~l~lPd-~eeR~eILk~l 1106 (1226)
...+++..||-..+.+++|+ .++..+++...
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 24469999998788999987 45557777653
No 213
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.91 E-value=6.6e-10 Score=111.19 Aligned_cols=120 Identities=29% Similarity=0.381 Sum_probs=71.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC-ccc-cccccchHHHH-HHHHHHHH-hcCCeEEEEccccccccCCCC
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SIT-SKWFGEGEKYV-KAVFSLAS-KIAPSVVFVDEVDSMLGRREN 1036 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s-~L~-s~~~Ge~e~~I-~~lF~~A~-k~~PsILfIDEID~L~~~r~~ 1036 (1226)
+|||+|+||+|||++|+++|+.++..|.+|.+. ++. ++..|..--.. ...|...+ -.-..|+++|||.+. +
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra-----p 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA-----P 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC-----C
Confidence 589999999999999999999999999988774 322 12111100000 00000000 000269999999865 5
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCC-----CCcHHHHhhc
Q 000914 1037 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-----DLDEAVVRRL 1085 (1226)
Q Consensus 1037 ~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~-----~Ld~aLlrRF 1085 (1226)
+..|.++.+++++....++|....-+.+++||||.|+.+ .|+++++.||
T Consensus 76 pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 76 PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 667888888888888888887666678899999999865 7899999998
No 214
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2e-08 Score=116.01 Aligned_cols=72 Identities=33% Similarity=0.600 Sum_probs=62.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccch-HHHHHHHHHHH----HhcCCeEEEEccccccc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSML 1031 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s-~~~Ge~-e~~I~~lF~~A----~k~~PsILfIDEID~L~ 1031 (1226)
.+|||.||+|+|||.||+.||+-++.||.-++|..|.. .|+|+. |..|..++..| .+.+.+|+||||+|.+.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 47999999999999999999999999999999999875 577765 66777777766 34567999999999997
No 215
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.90 E-value=1.7e-08 Score=122.48 Aligned_cols=164 Identities=19% Similarity=0.291 Sum_probs=100.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHH----HhcCCeEEEEccccccccCCCC
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRREN 1036 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~ 1036 (1226)
-+||+||||-|||+||+.||+++|+.++++|+++-.+. ......|..+...- ...+|.+|+|||||--
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa------ 399 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA------ 399 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC------
Confidence 37999999999999999999999999999999874321 11112222222111 1257899999999832
Q ss_pred CchHHHHHHHHHhhhh----hccCCcccC----------CCcEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHHH
Q 000914 1037 PGEHEAMRKMKNEFMV----NWDGLRTKD----------KERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNRE 1100 (1226)
Q Consensus 1037 ~~~~e~l~~vl~~Ll~----~ldgl~~k~----------~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~ 1100 (1226)
...+.+ ++..++. +..|-.... .-.--||+.+|... .|+++. -|..++.|..|...-..
T Consensus 400 --~~~~Vd-vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv 474 (877)
T KOG1969|consen 400 --PRAAVD-VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLV 474 (877)
T ss_pred --cHHHHH-HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHH
Confidence 112222 2222221 111111100 01235778888644 455544 58889999999988888
Q ss_pred HHHHHHHhhcccCC-hhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000914 1101 KIIRVILAKEELAS-DVDLEGIANMADGYSGSDLKNLCVTAA 1141 (1226)
Q Consensus 1101 eILk~lL~k~~l~~-dvdl~~LA~~TeGySgsDL~~L~~~Aa 1141 (1226)
+-|+.++.++++.- -..+..|+..|++ ||+..++...
T Consensus 475 ~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQ 512 (877)
T KOG1969|consen 475 ERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQ 512 (877)
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHH
Confidence 88899988877652 2334555555544 5555554443
No 216
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.90 E-value=3.3e-08 Score=123.05 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=42.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 986 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~ 986 (1226)
.-|++++|+++++..++..+.. ..+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4577899999999988887752 1489999999999999999999998643
No 217
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.89 E-value=8.2e-08 Score=107.19 Aligned_cols=192 Identities=14% Similarity=0.178 Sum_probs=116.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe--cCcc-----c---ccccc-----ch-HHHHHHHH----HHHHhcC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAG-ANFINIS--MSSI-----T---SKWFG-----EG-EKYVKAVF----SLASKIA 1018 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg-~~fi~v~--~s~L-----~---s~~~G-----e~-e~~I~~lF----~~A~k~~ 1018 (1226)
.-++|+||+|+|||++++.++..+. ..++.+. ...+ . ...+| .. ...+..+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3589999999999999999999875 2222211 1111 0 00111 11 11112221 2233456
Q ss_pred CeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC--CCCC----cHHHHhhccccccCC
Q 000914 1019 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDL----DEAVVRRLPRRLMVN 1092 (1226)
Q Consensus 1019 PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~--p~~L----d~aLlrRF~~~I~l~ 1092 (1226)
+.+|+|||++.+- .... ..+..+... .......+.|+.+... ...+ ...+.+|+...++++
T Consensus 124 ~~vliiDe~~~l~--------~~~~-~~l~~l~~~----~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT--------PELL-EELRMLSNF----QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC--------HHHH-HHHHHHhCc----ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 7899999999872 1111 111222111 1111223333444322 1111 234666887889999
Q ss_pred CCCHHHHHHHHHHHHhhcc-----cCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCC
Q 000914 1093 LPDAPNREKIIRVILAKEE-----LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASP 1167 (1226)
Q Consensus 1093 lPd~eeR~eILk~lL~k~~-----l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ek~~~~~e~~~~~ 1167 (1226)
..+.++..+++...+...+ ..++..++.|+..+.|+.. .|..+|..+...+..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~-------------------- 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE-------------------- 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc--------------------
Confidence 9999999999999887532 2356678899999999864 5999999888766553
Q ss_pred CCCCccccccccHHHHHHHHHHhc
Q 000914 1168 PLYSSVDVRPLKMDDFKYAHEQVC 1191 (1226)
Q Consensus 1168 ~~~~~~d~r~Lt~eDF~~Al~~v~ 1191 (1226)
....|+.+++..++..++
T Consensus 250 ------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 ------EKREIGGEEVREVIAEID 267 (269)
T ss_pred ------CCCCCCHHHHHHHHHHhh
Confidence 124699999999998865
No 218
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=2.2e-08 Score=115.44 Aligned_cols=181 Identities=14% Similarity=0.226 Sum_probs=119.4
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEEe
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 991 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~----------fi~v~ 991 (1226)
.|++|+|++.+++.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 488999999999999998863 2334689999999999999999999987322 11111
Q ss_pred cCccc---------ccc--------cc--------chHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHH
Q 000914 992 MSSIT---------SKW--------FG--------EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEA 1042 (1226)
Q Consensus 992 ~s~L~---------s~~--------~G--------e~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~ 1042 (1226)
.+++. +.. .| -.-..++.+...+.. ....|++||++|.| +
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----~------ 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----N------ 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----C------
Confidence 22211 000 00 001235555444433 23469999999988 2
Q ss_pred HHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHH
Q 000914 1043 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1122 (1226)
Q Consensus 1043 l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA 1122 (1226)
....+.|+..++.- + +.++|..|+.++.|.+++++|+ ..+.|..|+.++-.++|+....... .+.+...++
T Consensus 138 -~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHH
Confidence 12334455555432 2 3466777788899999999999 7899999999999888887643221 122356788
Q ss_pred HHcCCCcHHHHHH
Q 000914 1123 NMADGYSGSDLKN 1135 (1226)
Q Consensus 1123 ~~TeGySgsDL~~ 1135 (1226)
....|-.+..+..
T Consensus 209 ~~a~Gs~~~al~~ 221 (314)
T PRK07399 209 ALAQGSPGAAIAN 221 (314)
T ss_pred HHcCCCHHHHHHH
Confidence 8887765555443
No 219
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.87 E-value=2e-08 Score=119.21 Aligned_cols=143 Identities=22% Similarity=0.284 Sum_probs=85.3
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEEEecC--
Q 000914 923 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FINISMS-- 993 (1226)
Q Consensus 923 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~-------fi~v~~s-- 993 (1226)
++++.+.++..+.+...+. ..++++|+||||||||++|+++|..+... ++.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~----------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT----------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHHh----------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 3455556666666655443 12589999999999999999999988431 2222211
Q ss_pred --cccccc----ccch--HHHHHHHHHHHHhc--CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccC-------
Q 000914 994 --SITSKW----FGEG--EKYVKAVFSLASKI--APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG------- 1056 (1226)
Q Consensus 994 --~L~s~~----~Ge~--e~~I~~lF~~A~k~--~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldg------- 1056 (1226)
++...+ .|.. ...+..++..|... .|.|||||||++-- ..+++.+++..++.
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan-----------i~kiFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN-----------LSKVFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC-----------HHHhhhhhhhhcccccccccc
Confidence 122111 1100 11233445566543 47999999998651 11222233332221
Q ss_pred -----------CcccCCCcEEEEEecCCCC----CCcHHHHhhccccccCCC
Q 000914 1057 -----------LRTKDKERVLVLAATNRPF----DLDEAVVRRLPRRLMVNL 1093 (1226)
Q Consensus 1057 -----------l~~k~~~~VlVIaTTN~p~----~Ld~aLlrRF~~~I~l~l 1093 (1226)
-.-..+.++.||||+|..+ .+|.|++|||. .+.+.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 0112357899999999876 79999999994 455543
No 220
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.84 E-value=1.1e-08 Score=122.64 Aligned_cols=202 Identities=19% Similarity=0.235 Sum_probs=121.1
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc--
Q 000914 924 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-- 998 (1226)
Q Consensus 924 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~-- 998 (1226)
.++.|.....+.+.+.+.. + ......++|+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEK-------I-----APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 3456666666666555432 0 1123569999999999999999998776 568999999876332
Q ss_pred ---cccchH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEE
Q 000914 999 ---WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1068 (1226)
Q Consensus 999 ---~~Ge~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVI 1068 (1226)
.+|... ....+.|..| ..++||||||+.| +...+..+.+++++-.....+.....+.++.||
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii 278 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDL-----PLNLQAKLLRFLQERVIERLGGREEIPVDVRIV 278 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhC-----CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEE
Confidence 122110 0011122222 3589999999998 434455555555443222222222223578999
Q ss_pred EecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhc----cc----CChhcHHHHHHHcCCCc
Q 000914 1069 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL----ASDVDLEGIANMADGYS 1129 (1226)
Q Consensus 1069 aTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k~----~l----~~dvdl~~LA~~TeGyS 1129 (1226)
+||+.. ..+.+.+..|+ ..+.|.+|...+|.+ ++++++.+. .. .++..+..|....=..+
T Consensus 279 ~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 357 (445)
T TIGR02915 279 CATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGN 357 (445)
T ss_pred EecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCCh
Confidence 999764 34566677777 468888999888876 455555442 11 12233444444332345
Q ss_pred HHHHHHHHHHHHhhhhH
Q 000914 1130 GSDLKNLCVTAAHCPIR 1146 (1226)
Q Consensus 1130 gsDL~~L~~~Aa~~air 1146 (1226)
.++|++++++|+..+-.
T Consensus 358 vreL~~~i~~a~~~~~~ 374 (445)
T TIGR02915 358 VRELENKVKRAVIMAEG 374 (445)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 68899999888765443
No 221
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.80 E-value=8.9e-08 Score=110.46 Aligned_cols=95 Identities=19% Similarity=0.311 Sum_probs=54.1
Q ss_pred CeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC------------CCCCcHHHHhhcc
Q 000914 1019 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRLP 1086 (1226)
Q Consensus 1019 PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF~ 1086 (1226)
|+||||||+|.| +-....+++++++ . .-.+ +||.+||+ |+-++..|++|+
T Consensus 279 pGVLFIDEvHmL-----DiEcFsfLnralE-------s----~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLDRl- 340 (398)
T PF06068_consen 279 PGVLFIDEVHML-----DIECFSFLNRALE-------S----ELSP-IIILATNRGITKIRGTDIISPHGIPLDLLDRL- 340 (398)
T ss_dssp E-EEEEESGGGS-----BHHHHHHHHHHHT-------S----TT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-
T ss_pred cceEEecchhhc-----cHHHHHHHHHHhc-------C----CCCc-EEEEecCceeeeccCccCcCCCCCCcchHhhc-
Confidence 789999999988 2222223333322 1 1133 55566664 678889999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHH
Q 000914 1087 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1131 (1226)
Q Consensus 1087 ~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgs 1131 (1226)
.+|...+.+.++-.+|++..++.+.+. ++..++.|+......+-+
T Consensus 341 lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLR 386 (398)
T PF06068_consen 341 LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLR 386 (398)
T ss_dssp EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HH
T ss_pred EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHH
Confidence 788899999999999999999987765 444455555544433333
No 222
>PRK04132 replication factor C small subunit; Provisional
Probab=98.80 E-value=4.6e-08 Score=124.27 Aligned_cols=160 Identities=20% Similarity=0.242 Sum_probs=118.6
Q ss_pred CCCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcC------CeEEE
Q 000914 957 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVVF 1023 (1226)
Q Consensus 957 kP~~gVLL~G--PPGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~------PsILf 1023 (1226)
-|.-+-++.| |++.|||++|++||+++ +.+++.+|+++..+ -..++.+...+.... ..|+|
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 3444567778 99999999999999998 56899999987432 235566555443322 25999
Q ss_pred EccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHH
Q 000914 1024 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 1103 (1226)
Q Consensus 1024 IDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eIL 1103 (1226)
|||+|.| +...+.++.+ .++. .+..+.+|++||.++.+.+++++|+ ..+.|..|+.++-...+
T Consensus 636 IDEaD~L-----t~~AQnALLk-------~lEe----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADAL-----TQDAQQALRR-------TMEM----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccC-----CHHHHHHHHH-------HhhC----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 9999998 2223333333 3332 2356889999999999999999998 78999999999999999
Q ss_pred HHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 000914 1104 RVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1140 (1226)
Q Consensus 1104 k~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~A 1140 (1226)
+.++.++++. ++..+..|+..++|-....|..| +.+
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~L-q~~ 735 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRRAINIL-QAA 735 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHH-HHH
Confidence 9998876654 56778999999998766666444 443
No 223
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.79 E-value=2.1e-08 Score=121.82 Aligned_cols=153 Identities=25% Similarity=0.312 Sum_probs=92.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 984 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg---------------- 984 (1226)
..|+++.|+..+++.+.-.+. ...+++|.||||+|||+||+.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999988776654332 235799999999999999999986431
Q ss_pred ------------CcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhh
Q 000914 985 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1052 (1226)
Q Consensus 985 ------------~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~ 1052 (1226)
.||....++......+|.....-.+.+..|.. +||||||++.+ +...++.+...++....
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----KRSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----CHHHHHHHHHHHHcCcE
Confidence 12222222221111122221112234455544 89999999987 33344444444443322
Q ss_pred h--ccCCcccCCCcEEEEEecCCC-----C------------------CCcHHHHhhccccccCCCCCHH
Q 000914 1053 N--WDGLRTKDKERVLVLAATNRP-----F------------------DLDEAVVRRLPRRLMVNLPDAP 1097 (1226)
Q Consensus 1053 ~--ldgl~~k~~~~VlVIaTTN~p-----~------------------~Ld~aLlrRF~~~I~l~lPd~e 1097 (1226)
. ..+.....+.++.+|+++|+. . .+...+++||+..+.++.++..
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 1 112222234679999999863 1 4778888899977777766543
No 224
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.78 E-value=3.5e-08 Score=112.64 Aligned_cols=147 Identities=20% Similarity=0.269 Sum_probs=97.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 984 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg-------------------- 984 (1226)
++.+.+.+...+...+.. . .+-+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~---~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------S---GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------c---CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 455666666666665542 1 12233599999999999999999999986
Q ss_pred ----CcEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccC
Q 000914 985 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1056 (1226)
Q Consensus 985 ----~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldg 1056 (1226)
..|+.++.++..... .....++.+-...... ..-||+|||+|.|.. ...+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhcc
Confidence 467777776643321 1233445444443332 347999999999831 233344443332
Q ss_pred CcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHH
Q 000914 1057 LRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKI 1102 (1226)
Q Consensus 1057 l~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eI 1102 (1226)
.+.+..+|.+||.+..+-+.+++|+ ..+.|..|+...+...
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHH
Confidence 3467899999999999999999998 6788877554444433
No 225
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=5.5e-08 Score=109.72 Aligned_cols=85 Identities=22% Similarity=0.440 Sum_probs=58.9
Q ss_pred CeEEEEccccccccCCCCCchHHHHHH-HHHhhhhhccCCcc------cCCCcEEEEEec----CCCCCCcHHHHhhccc
Q 000914 1019 PSVVFVDEVDSMLGRRENPGEHEAMRK-MKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPR 1087 (1226)
Q Consensus 1019 PsILfIDEID~L~~~r~~~~~~e~l~~-vl~~Ll~~ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRF~~ 1087 (1226)
-+||||||||.++.+....+. ...+. +...++-.+.|-.- -....+++||+. ..|.+|-|.+.-||+-
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 469999999999865542221 22222 33344444444321 123678999986 5788999999999999
Q ss_pred cccCCCCCHHHHHHHHH
Q 000914 1088 RLMVNLPDAPNREKIIR 1104 (1226)
Q Consensus 1088 ~I~l~lPd~eeR~eILk 1104 (1226)
++++...+.++-.+||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999988877664
No 226
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=9.4e-08 Score=110.85 Aligned_cols=151 Identities=18% Similarity=0.244 Sum_probs=101.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHHH
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1013 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~elg~~------------------------fi~v~~s~L~s~~~Ge~e~~I~~lF~~ 1013 (1226)
.+..+||+||+|+||+++|+++|+.+.+. ++.+....- +. .-.-..++.+...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 45689999999999999999999998542 222221100 00 0123456665555
Q ss_pred HHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccc
Q 000914 1014 ASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 1089 (1226)
Q Consensus 1014 A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I 1089 (1226)
+.. ....|++||++|.|. ....+.|+..++. .+.++++|.+|+.++.|.+++++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-eee
Confidence 543 234699999999982 2344556665554 3356888999999999999999999 679
Q ss_pred cCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHH
Q 000914 1090 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1131 (1226)
Q Consensus 1090 ~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgs 1131 (1226)
.|..|+.++-.+.+..... ...+.+...++....|-.+.
T Consensus 161 ~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPLR 199 (328)
T ss_pred eCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHHH
Confidence 9999999988777765431 12334445666677765443
No 227
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.77 E-value=2.1e-08 Score=105.95 Aligned_cols=114 Identities=26% Similarity=0.345 Sum_probs=71.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecCccccccccchHHHHHHHHHHH----HhcCCeEEEEccccc
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDS 1029 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~elg~----~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A----~k~~PsILfIDEID~ 1029 (1226)
|...+||.||+|+|||.||+++|..+.. +++.++++.+... +..+..+..++..+ .....+||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5567999999999999999999999996 9999999987651 11111222222211 111225999999999
Q ss_pred cccCCCCCchHHHHHHHHHhhhhhccCCcc-------cCCCcEEEEEecCCC
Q 000914 1030 MLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKERVLVLAATNRP 1074 (1226)
Q Consensus 1030 L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~-------k~~~~VlVIaTTN~p 1074 (1226)
..+. ........-..+.+.|+..+++-.- -+-.+++||+|+|--
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 8653 2222233333556666666543221 123578999999853
No 228
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=1.8e-07 Score=108.56 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=101.0
Q ss_pred CcccccC-cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000914 922 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 986 (1226)
Q Consensus 922 tfddI~G-le~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 986 (1226)
.|+.|.| ++.+++.|...+.. .+.++.+||+||+|+||+++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4677777 88899999887752 3345678999999999999999999987432
Q ss_pred ----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhh
Q 000914 987 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1052 (1226)
Q Consensus 987 ----------fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~ 1052 (1226)
+..+... +.. ..-..++.+...+.. ....|++|||+|.+- ....+.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHH
Confidence 1111110 010 112345554444332 223699999999882 223455666
Q ss_pred hccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHH
Q 000914 1053 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 1104 (1226)
Q Consensus 1053 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk 1104 (1226)
.++. .+..+++|.+|+.+..|.+++++|+ ..+.+..|+.++-..+++
T Consensus 133 ~LEE----Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 133 FLEE----PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred HhcC----CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 5554 3356777778888889999999999 789999999888766654
No 229
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.74 E-value=7.4e-08 Score=116.43 Aligned_cols=203 Identities=21% Similarity=0.264 Sum_probs=121.6
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-
Q 000914 923 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 998 (1226)
Q Consensus 923 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~- 998 (1226)
+.++.|.......+.+.+.. . ......+||+|++||||+++|++|.... +.+|+.++|+.+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~-------~-----~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR-------L-----SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHH-------H-----hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 45677776666666655542 0 1223569999999999999999999886 579999999876332
Q ss_pred ----cccchHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEE
Q 000914 999 ----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1067 (1226)
Q Consensus 999 ----~~Ge~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlV 1067 (1226)
.+|.... .....|..| ..+.|||||||.| +...+..+.+++++-.....+-......++.|
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDM-----PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccC-----CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 1221100 001122222 3489999999998 33344444444433221111111112356899
Q ss_pred EEecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhcc----c----CChhcHHHHHHHcCCC
Q 000914 1068 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMADGY 1128 (1226)
Q Consensus 1068 IaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k~~----l----~~dvdl~~LA~~TeGy 1128 (1226)
|+||+.. ..+.+.+..|| ..+.+.+|...+|.+ ++++++.+.. . .+...+..|....=..
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 355 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCC
Confidence 9999753 35667778888 457788888777765 5666655421 1 1223344444443344
Q ss_pred cHHHHHHHHHHHHhhhhH
Q 000914 1129 SGSDLKNLCVTAAHCPIR 1146 (1226)
Q Consensus 1129 SgsDL~~L~~~Aa~~air 1146 (1226)
+.++|++++++|+..+-.
T Consensus 356 Nv~eL~~~i~~~~~~~~~ 373 (469)
T PRK10923 356 NVRQLENTCRWLTVMAAG 373 (469)
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 668999999988865443
No 230
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.68 E-value=5.1e-08 Score=123.33 Aligned_cols=187 Identities=19% Similarity=0.216 Sum_probs=109.2
Q ss_pred HHHHHhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhh---cC----CCCCCCceEEEEcCCCChHHHHH
Q 000914 904 EFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLA 976 (1226)
Q Consensus 904 e~~~~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~---k~----~l~kP~~gVLL~GPPGTGKT~LA 976 (1226)
+....+...+.| .|.|.+.+|..|.-.+.-.......+. .+ ...+...+|||.|+||||||.+|
T Consensus 439 ~i~~~L~~SiaP---------~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLA 509 (915)
T PTZ00111 439 MIYRILLDSFAP---------SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLL 509 (915)
T ss_pred HHHHHHHHHhCC---------eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHH
Confidence 344445555555 689999999887444322111100000 00 11233457999999999999999
Q ss_pred HHHHHHhC-------CcEEEEecCcccccccc--chHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHH
Q 000914 977 KAVATEAG-------ANFINISMSSITSKWFG--EGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1046 (1226)
Q Consensus 977 rAIA~elg-------~~fi~v~~s~L~s~~~G--e~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~v 1046 (1226)
+++++... .++..+.+..... ..+ .++..+ .+.+..|.+ ++++|||++.| +...+..+.++
T Consensus 510 r~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlAdg---GtL~IDEidkm-----s~~~Q~aLlEa 580 (915)
T PTZ00111 510 HYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLANG---GVCCIDELDKC-----HNESRLSLYEV 580 (915)
T ss_pred HHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEcCC---CeEEecchhhC-----CHHHHHHHHHH
Confidence 99998652 3444444433211 000 011100 112333333 89999999988 33344445444
Q ss_pred HHhhhhh--ccCCcccCCCcEEEEEecCCC-------------CCCcHHHHhhccccc-cCCCCCHHHHHHHHHHHHh
Q 000914 1047 KNEFMVN--WDGLRTKDKERVLVLAATNRP-------------FDLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILA 1108 (1226)
Q Consensus 1047 l~~Ll~~--ldgl~~k~~~~VlVIaTTN~p-------------~~Ld~aLlrRF~~~I-~l~lPd~eeR~eILk~lL~ 1108 (1226)
+++-... -.|+...-+.++.||||+|+. -.|++.+++||+.++ .++.|+.+.-..|.++++.
T Consensus 581 MEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 581 MEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred HhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 4433221 224444456789999999984 257899999998764 4577887776777666654
No 231
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.67 E-value=1.5e-07 Score=113.08 Aligned_cols=177 Identities=20% Similarity=0.270 Sum_probs=106.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-----cccchHH-------HHHHHHHHHHhcCCeEEEE
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVVFV 1024 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~-----~~Ge~e~-------~I~~lF~~A~k~~PsILfI 1024 (1226)
..+||+|++||||+++|++|.... +.+|+.++|..+... .+|.... ...+.|..| ..++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEE
Confidence 579999999999999999998775 579999999876332 1221100 001123322 3489999
Q ss_pred ccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhhccccccCCCCCHH
Q 000914 1025 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1097 (1226)
Q Consensus 1025 DEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~e 1097 (1226)
||||.| +...+..+..+++.-.....+.....+.++.||+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 244 d~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLr 317 (457)
T PRK11361 244 DEIGEM-----PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLR 317 (457)
T ss_pred echhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 333344443333332111112212223568999999864 24556666677 35788889988
Q ss_pred HHHH----HHHHHHhhccc--------CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhh
Q 000914 1098 NREK----IIRVILAKEEL--------ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPI 1145 (1226)
Q Consensus 1098 eR~e----ILk~lL~k~~l--------~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~ai 1145 (1226)
+|.+ +++.++.+... .++..+..|....=..+.++|++++++|+..+-
T Consensus 318 eR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~ 377 (457)
T PRK11361 318 DRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS 377 (457)
T ss_pred hchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC
Confidence 8865 44455544211 122223334333323466899999998876543
No 232
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.62 E-value=1.1e-06 Score=107.37 Aligned_cols=229 Identities=21% Similarity=0.236 Sum_probs=144.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCc
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSS 994 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v~~s~ 994 (1226)
.+.+.+.-..+|..++...+.. ++ -...+.|.|-||||||.+++.+..++ .+.|+.||+-.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-----~~----~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~ 467 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-----QG----LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR 467 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-----CC----CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee
Confidence 3556677777887777653331 01 11369999999999999999998766 47889999866
Q ss_pred cccc----------cccch------HHHHHHHHHHH-HhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCC
Q 000914 995 ITSK----------WFGEG------EKYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1057 (1226)
Q Consensus 995 L~s~----------~~Ge~------e~~I~~lF~~A-~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl 1057 (1226)
|.+. +.|+. -..+..-|... -+..++||+|||+|.|+.+.+ . + ++.+-..
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q-----d----V----lYn~fdW 534 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ-----D----V----LYNIFDW 534 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH-----H----H----HHHHhcC
Confidence 5442 12221 11223333311 233578999999999975432 2 2 2222233
Q ss_pred cccCCCcEEEEEecCCCCCCcH----HHHhhcc-ccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH--
Q 000914 1058 RTKDKERVLVLAATNRPFDLDE----AVVRRLP-RRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG-- 1130 (1226)
Q Consensus 1058 ~~k~~~~VlVIaTTN~p~~Ld~----aLlrRF~-~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySg-- 1130 (1226)
+...+.+++||+.+|..+.... .+-+|++ .++.|.+.+..+..+|+...+..........++.+|+.....+|
T Consensus 535 pt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDa 614 (767)
T KOG1514|consen 535 PTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDA 614 (767)
T ss_pred CcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccH
Confidence 4446688999999987553332 2223554 47889999999999999999887654555556666666555555
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcccc
Q 000914 1131 SDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1194 (1226)
Q Consensus 1131 sDL~~L~~~Aa~~aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~ 1194 (1226)
+....+|++|...+-.+.. . + .......|++-|+.+|+.++..+.
T Consensus 615 Rraldic~RA~Eia~~~~~-~-----------~-------k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 615 RRALDICRRAAEIAEERNV-K-----------G-------KLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHHHhhhhcc-c-----------c-------cccccceeehHHHHHHHHHHhhhh
Confidence 3344677777765544321 0 0 111224688899999998875543
No 233
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.62 E-value=1e-06 Score=100.00 Aligned_cols=177 Identities=16% Similarity=0.223 Sum_probs=108.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCccccc--------------c--ccchHHHHHHHHHHH
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITSK--------------W--FGEGEKYVKAVFSLA 1014 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~v~~s~L~s~--------------~--~Ge~e~~I~~lF~~A 1014 (1226)
.++||+|++|+|||++++.++... .+|++.+.++.--+. + ..........+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998765 257777776441100 0 111223344456677
Q ss_pred HhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC--CCCCcHHHHhhccccccCC
Q 000914 1015 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDLDEAVVRRLPRRLMVN 1092 (1226)
Q Consensus 1015 ~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~--p~~Ld~aLlrRF~~~I~l~ 1092 (1226)
+...+-+|+|||++.++..... .-+.+++.+... ...-+-.++.+||-.- .-.-|+.+.+||. .+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~~-----~qr~~Ln~LK~L----~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSYR-----KQREFLNALKFL----GNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccHH-----HHHHHHHHHHHH----hhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 7888899999999998633221 223333433332 2222344566665432 2345688899994 55555
Q ss_pred CCC-HHHHHHHHHHHHhhcccC------ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHH
Q 000914 1093 LPD-APNREKIIRVILAKEELA------SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1147 (1226)
Q Consensus 1093 lPd-~eeR~eILk~lL~k~~l~------~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aire 1147 (1226)
.-. -++...++..+-...++. ...-...|-.+++|+.| +|..|+..|+..|++.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc
Confidence 433 344556666665554332 22233566778888655 7888889999888875
No 234
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.61 E-value=1.8e-07 Score=106.16 Aligned_cols=202 Identities=22% Similarity=0.294 Sum_probs=127.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 996 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~ 996 (1226)
...|+.|++....++.+.+.... .... ...+||+|.+||||-.+|++..... ..+|+.+||+.+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k----------~Aml--DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQK----------LAML--DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHH----------hhcc--CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 34677888877776666554331 1111 1359999999999999999987665 6899999998753
Q ss_pred -----cccccchH--HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEE
Q 000914 997 -----SKWFGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1069 (1226)
Q Consensus 997 -----s~~~Ge~e--~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIa 1069 (1226)
+..||... .--.++|+.|.+ +.+|+|||..| ++..|..+.++++.-....-|....-..+|.||+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIc 339 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 339 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEe
Confidence 23344332 345678998887 89999999988 5556666666666554444444333457899999
Q ss_pred ecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHh----hcccC-ChhcHHHHHHHcC-CC--cH
Q 000914 1070 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILA----KEELA-SDVDLEGIANMAD-GY--SG 1130 (1226)
Q Consensus 1070 TTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~----k~~l~-~dvdl~~LA~~Te-Gy--Sg 1130 (1226)
||..+ ..+-+.+.-|+ .++.+.+|...+|.. +.+.++. +.... ...+.+.+-..+. +| +.
T Consensus 340 atq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNV 418 (511)
T COG3283 340 ATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNV 418 (511)
T ss_pred cccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccH
Confidence 99653 23334444466 578889999888754 3333333 33222 2233233333332 33 34
Q ss_pred HHHHHHHHHHHh
Q 000914 1131 SDLKNLCVTAAH 1142 (1226)
Q Consensus 1131 sDL~~L~~~Aa~ 1142 (1226)
++|+|.+-+|+.
T Consensus 419 RqL~N~iyRA~s 430 (511)
T COG3283 419 RQLKNAIYRALT 430 (511)
T ss_pred HHHHHHHHHHHH
Confidence 677766665553
No 235
>PRK15115 response regulator GlrR; Provisional
Probab=98.61 E-value=3.2e-07 Score=110.13 Aligned_cols=177 Identities=20% Similarity=0.288 Sum_probs=106.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccchHH-------HHHHHHHHHHhcCCeEEEE
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEK-------YVKAVFSLASKIAPSVVFV 1024 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~-----~Ge~e~-------~I~~lF~~A~k~~PsILfI 1024 (1226)
..++|+|++||||+++|++|.+.. +.+|+.++|..+.... +|.... ....+|..| ..++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEE
Confidence 469999999999999999998876 5799999998763321 111000 001122222 3489999
Q ss_pred ccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhhccccccCCCCCHH
Q 000914 1025 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1097 (1226)
Q Consensus 1025 DEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~e 1097 (1226)
||||.| +...+..+.+++++-....-|.......++.+|+||+.. ..+.+.+..|+ ..+.|.+|...
T Consensus 235 ~~i~~l-----~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr 308 (444)
T PRK15115 235 DEIGDM-----PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALA 308 (444)
T ss_pred EccccC-----CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChH
Confidence 999998 334445544444433222112222223478999999853 13334444555 35778889998
Q ss_pred HHHH----HHHHHHhhcc------c--CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhh
Q 000914 1098 NREK----IIRVILAKEE------L--ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPI 1145 (1226)
Q Consensus 1098 eR~e----ILk~lL~k~~------l--~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~ai 1145 (1226)
+|.+ ++++++.+.. . .++..+..|....=.-+.++|+++++.|+..+-
T Consensus 309 ~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~ 368 (444)
T PRK15115 309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTS 368 (444)
T ss_pred hccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 8854 4455655421 1 133334445544423466889999888876443
No 236
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=6.2e-07 Score=111.56 Aligned_cols=194 Identities=13% Similarity=0.187 Sum_probs=116.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EecC---cc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMS---SI 995 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~-v~~s---~L 995 (1226)
..+++++.+.++..+.|+.++..... . ..+.+-++|+||||+|||++++.+|.+++..+++ ++.. ..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 46889999999999998887753111 0 2233459999999999999999999999876544 1111 00
Q ss_pred cc---------c---cccchHHHHHHHHHHHHh----------cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhh
Q 000914 996 TS---------K---WFGEGEKYVKAVFSLASK----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1053 (1226)
Q Consensus 996 ~s---------~---~~Ge~e~~I~~lF~~A~k----------~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ 1053 (1226)
.. . .+......++.++..|.. ....|||||||+.++.. . ......++... .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~----~~~lq~lLr~~--~ 223 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D----TRALHEILRWK--Y 223 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----HHHHHHHHHHH--h
Confidence 00 0 011123344555555542 23569999999987532 1 12222222201 1
Q ss_pred ccCCcccCCCcEEEEEecC-CCC----------C----CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhccc----
Q 000914 1054 WDGLRTKDKERVLVLAATN-RPF----------D----LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL---- 1112 (1226)
Q Consensus 1054 ldgl~~k~~~~VlVIaTTN-~p~----------~----Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l---- 1112 (1226)
.. ...+.+|++++ .+. . |.+++++ |. .+|.|.+....+..+.|+.++..+..
T Consensus 224 ~e------~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 224 VS------IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred hc------CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 11 12233333332 111 1 3467775 44 47899999999999989988876421
Q ss_pred ----CChhcHHHHHHHcCCCcHHHHHHH
Q 000914 1113 ----ASDVDLEGIANMADGYSGSDLKNL 1136 (1226)
Q Consensus 1113 ----~~dvdl~~LA~~TeGySgsDL~~L 1136 (1226)
.....+..|+....|--...|..|
T Consensus 297 ~~~~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred ccccCCHHHHHHHHHhCCChHHHHHHHH
Confidence 123467778887777666666555
No 237
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.59 E-value=1.4e-06 Score=96.47 Aligned_cols=183 Identities=20% Similarity=0.293 Sum_probs=128.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEecCc---
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSS--- 994 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el-g--~~fi~v~~s~--- 994 (1226)
.+++.+.+.++....|+.+.. .....++|+|||+|+||-+.+.++.+++ | .+=..+....
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 456677788888888877553 1123589999999999999999999888 3 1111111100
Q ss_pred ----------cccc--------cccch-HHHHHHHHHHHHhcCC---------eEEEEccccccccCCCCCchHHHHHHH
Q 000914 995 ----------ITSK--------WFGEG-EKYVKAVFSLASKIAP---------SVVFVDEVDSMLGRRENPGEHEAMRKM 1046 (1226)
Q Consensus 995 ----------L~s~--------~~Ge~-e~~I~~lF~~A~k~~P---------sILfIDEID~L~~~r~~~~~~e~l~~v 1046 (1226)
+.+. -.|.. .-.++.++....+.+| .|++|-|+|.| ....|.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----T~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----TRDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----hHHHHHHHHHH
Confidence 1111 12222 2234555554433332 49999999999 34567788888
Q ss_pred HHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc
Q 000914 1047 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1125 (1226)
Q Consensus 1047 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~T 1125 (1226)
++... ..+.+|..+|....+-+.+++|+ ..+.++.|+.++...++...+.++++. +..-+..+|+.+
T Consensus 151 MEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 151 MEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 77654 45788888999999999999998 679999999999999999999998876 455578888888
Q ss_pred CCCcHHHHH
Q 000914 1126 DGYSGSDLK 1134 (1226)
Q Consensus 1126 eGySgsDL~ 1134 (1226)
+|.-.+.|-
T Consensus 219 ~~nLRrAll 227 (351)
T KOG2035|consen 219 NRNLRRALL 227 (351)
T ss_pred cccHHHHHH
Confidence 877665553
No 238
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=1.5e-06 Score=100.54 Aligned_cols=164 Identities=13% Similarity=0.145 Sum_probs=106.7
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 000914 929 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 986 (1226)
Q Consensus 929 le~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~---------------------- 986 (1226)
+....+.|...+.. .+-+..+||+||.|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 7 LQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 34566666665542 2345789999999999999999999988431
Q ss_pred --EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000914 987 --FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1060 (1226)
Q Consensus 987 --fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k 1060 (1226)
|+.+... .++. -.-..++.+...+.. ..--|++||++|.|. ....|.|+..++.
T Consensus 74 PD~~~i~p~--~~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE---- 133 (325)
T PRK06871 74 PDFHILEPI--DNKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE---- 133 (325)
T ss_pred CCEEEEccc--cCCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC----
Confidence 1112110 0111 123455655544433 233699999999982 2344556666554
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 000914 1061 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1061 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySg 1130 (1226)
++..+++|.+|+.++.|.+.+++|+ ..+.|..|+.++-.+.|..... ........++..+.|-.+
T Consensus 134 Pp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 134 PRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred CCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 4467899999999999999999999 6889999998888777765421 122234445555655444
No 239
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=3.1e-06 Score=99.55 Aligned_cols=237 Identities=21% Similarity=0.261 Sum_probs=145.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccc-
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK- 998 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v~~s~L~s~- 998 (1226)
.+.|.+..+..+++++...+. ...+.++.+.|-||||||.+...+...+ ....++++|..|...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 578889999999998886444 2234679999999999999998776655 335688888763211
Q ss_pred ---------c----ccc-hHHHHHHHHHHHH-hc-CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCC
Q 000914 999 ---------W----FGE-GEKYVKAVFSLAS-KI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1062 (1226)
Q Consensus 999 ---------~----~Ge-~e~~I~~lF~~A~-k~-~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~ 1062 (1226)
+ .+. .+......|+.-. +. .+-||++||+|.|+.+... ++-+ +.+|..+ .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~---------vLy~-lFewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT---------VLYT-LFEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc---------eeee-ehhcccC---Cc
Confidence 1 111 1122223333222 22 3679999999999633211 1111 1234443 45
Q ss_pred CcEEEEEecCCCCCCcHHHHh---h---ccccccCCCCCHHHHHHHHHHHHhhcccC--ChhcHHHHHHHcCCCcHHHHH
Q 000914 1063 ERVLVLAATNRPFDLDEAVVR---R---LPRRLMVNLPDAPNREKIIRVILAKEELA--SDVDLEGIANMADGYSGSDLK 1134 (1226)
Q Consensus 1063 ~~VlVIaTTN~p~~Ld~aLlr---R---F~~~I~l~lPd~eeR~eILk~lL~k~~l~--~dvdl~~LA~~TeGySgsDL~ 1134 (1226)
.++++||.+|..+.-|..+-| | -+..+.|++.+.++..+||+.-+...... .+..++..|....|.+| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999987655544444 2 25678999999999999999999876543 23457778888888777 444
Q ss_pred ---HHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccccc
Q 000914 1135 ---NLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1195 (1226)
Q Consensus 1135 ---~L~~~Aa~~aireli~~~~~ek~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~pS~s 1195 (1226)
.+|+.|...+ +.+.+ .....+.+.........+|.++++..++..+-.+-+
T Consensus 367 kaLdv~R~aiEI~-----E~e~r-----~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 367 KALDVCRRAIEIA-----EIEKR-----KILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred HHHHHHHHHHHHH-----HHHHh-----hccccCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence 3444444322 21111 111112222222222356778999988888755543
No 240
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.4e-06 Score=101.43 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=100.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHH
Q 000914 957 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFS 1012 (1226)
Q Consensus 957 kP~~gVLL~GPPGTGKT~LArAIA~elg~~------------------------fi~v~~s~L~s~~~Ge~e~~I~~lF~ 1012 (1226)
+.+..+||+||+|+||+++|.++|+.+-+. ++.+.... ... .-.-..++.+..
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKS--SLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-ccc--cCCHHHHHHHHH
Confidence 455789999999999999999999988331 11121100 000 012234555554
Q ss_pred HHHh----cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhcccc
Q 000914 1013 LASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 1088 (1226)
Q Consensus 1013 ~A~k----~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~ 1088 (1226)
.+.. ..-.|++||++|.|. ....|.|+..++. ++.++++|.+|+.++.|.+.+++|+ ..
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~ 161 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RL 161 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-cc
Confidence 4432 334699999999982 2344566666654 4467899999999999999999999 47
Q ss_pred ccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHH
Q 000914 1089 LMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDL 1133 (1226)
Q Consensus 1089 I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL 1133 (1226)
+.++.|+.++....|... .+. +..+...++..+.|-.+..+
T Consensus 162 ~~~~~~~~~~~~~~L~~~---~~~-~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 162 HYLAPPPEQYALTWLSRE---VTM-SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccCCCCCHHHHHHHHHHc---cCC-CHHHHHHHHHHcCCCHHHHH
Confidence 899999988777666432 122 23334566667776554433
No 241
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.54 E-value=8.7e-07 Score=103.10 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=48.0
Q ss_pred Ccc-cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 000914 922 TFD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 992 (1226)
Q Consensus 922 tfd-dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~-------~fi~v~~ 992 (1226)
-|+ ++.|+++.+.++.+++..... +.....+.++|+||||+|||+||++|++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 356 899999999999887764221 11223356899999999999999999999965 7777655
No 242
>PRK08116 hypothetical protein; Validated
Probab=98.54 E-value=4.6e-07 Score=102.41 Aligned_cols=162 Identities=17% Similarity=0.235 Sum_probs=87.6
Q ss_pred cCCCCCCCCCCCcccccCcHH---HHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C
Q 000914 911 ADVIPPSDIGVTFDDIGALEN---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G 984 (1226)
Q Consensus 911 ~~vIp~~e~~~tfddI~Gle~---vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g 984 (1226)
...+++.-...+|+++..-.. ++..+++++.. |... .....+++|+|++|||||+||.+||+++ +
T Consensus 72 ~s~i~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~-------~~~~--~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~ 142 (268)
T PRK08116 72 NSLLDEKFRNSTFENFLFDKGSEKAYKIARKYVKK-------FEEM--KKENVGLLLWGSVGTGKTYLAACIANELIEKG 142 (268)
T ss_pred hcCCCHHHHhcchhcccCChHHHHHHHHHHHHHHH-------HHhh--ccCCceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 445555444567877553333 23334443331 2111 1223579999999999999999999987 7
Q ss_pred CcEEEEecCcccccccc----chHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000914 985 ANFINISMSSITSKWFG----EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1060 (1226)
Q Consensus 985 ~~fi~v~~s~L~s~~~G----e~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k 1060 (1226)
.+++.++..++...... ........++... ....+|+|||++.. ......++.+..+++....
T Consensus 143 ~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e---~~t~~~~~~l~~iin~r~~-------- 209 (268)
T PRK08116 143 VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAE---RDTEWAREKVYNIIDSRYR-------- 209 (268)
T ss_pred CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCC---CCCHHHHHHHHHHHHHHHH--------
Confidence 88888887776543211 1111112223222 23469999999643 1122223333344443321
Q ss_pred CCCcEEEEEecCCC-CC----CcHHHHhhc---cccccCCCCCH
Q 000914 1061 DKERVLVLAATNRP-FD----LDEAVVRRL---PRRLMVNLPDA 1096 (1226)
Q Consensus 1061 ~~~~VlVIaTTN~p-~~----Ld~aLlrRF---~~~I~l~lPd~ 1096 (1226)
....+|.|||.+ .. ++..+.+|+ ...|.+.-++.
T Consensus 210 --~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 210 --KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred --CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 123466777754 33 456777774 22345555553
No 243
>PRK12377 putative replication protein; Provisional
Probab=98.53 E-value=5.1e-07 Score=100.89 Aligned_cols=109 Identities=18% Similarity=0.266 Sum_probs=66.8
Q ss_pred HhhcCCCCCCCCCCCcccccC----cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000914 908 KLLADVIPPSDIGVTFDDIGA----LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 908 ~ll~~vIp~~e~~~tfddI~G----le~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el 983 (1226)
.+....|++.....+|+++.. ...+...+..++.. |.. ...+++|+||||||||+||.+||+++
T Consensus 58 ~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 58 ILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred HHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344555677666778888653 22234444444332 111 23589999999999999999999988
Q ss_pred ---CCcEEEEecCccccccccch--HHHHHHHHHHHHhcCCeEEEEcccccc
Q 000914 984 ---GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 984 ---g~~fi~v~~s~L~s~~~Ge~--e~~I~~lF~~A~k~~PsILfIDEID~L 1030 (1226)
+..++.++..++........ ......++... ....+|+|||++..
T Consensus 126 ~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 126 LAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 67788888777655321100 00111222222 35689999999754
No 244
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.52 E-value=4e-07 Score=109.80 Aligned_cols=205 Identities=20% Similarity=0.275 Sum_probs=116.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc--
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-- 999 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~-- 999 (1226)
.+.|.......+.+.+.. + ......++|.|.+||||+++|+++.... +.+|+.++|..+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGR-------L-----SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ceeecCHHHHHHHHHHHH-------H-----hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 466666666666555532 0 1123469999999999999999998775 5799999998763322
Q ss_pred ---ccchHHH-------HHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEE
Q 000914 1000 ---FGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1069 (1226)
Q Consensus 1000 ---~Ge~e~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIa 1069 (1226)
+|..... ....|. ....++||||||+.| +...+..+.+++++-....-+-......++.||+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l-----~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~ 274 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDM-----PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA 274 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhC-----CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence 2211000 001122 223589999999998 3333434433333221111111111234678999
Q ss_pred ecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhcc----c----CChhcHHHHHHHcCCCcH
Q 000914 1070 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1070 TTN~p-------~~Ld~aLlrRF~~~I~l~lPd~eeR~e----ILk~lL~k~~----l----~~dvdl~~LA~~TeGySg 1130 (1226)
+|+.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++.... . .++..+..|....=.-+.
T Consensus 275 ~~~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv 353 (463)
T TIGR01818 275 ATHQNLEALVRQGKFREDLFHRL-NVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNV 353 (463)
T ss_pred eCCCCHHHHHHcCCcHHHHHHHh-CcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChH
Confidence 98753 24556777777 356777777666543 5555554421 1 123333444433212245
Q ss_pred HHHHHHHHHHHhhhhHHHHH
Q 000914 1131 SDLKNLCVTAAHCPIREILE 1150 (1226)
Q Consensus 1131 sDL~~L~~~Aa~~aireli~ 1150 (1226)
++|++++++|+..+-...+.
T Consensus 354 reL~~~~~~~~~~~~~~~i~ 373 (463)
T TIGR01818 354 RQLENLCRWLTVMASGDEVL 373 (463)
T ss_pred HHHHHHHHHHHHhCCCCccc
Confidence 89999999988765443333
No 245
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.51 E-value=5.7e-07 Score=94.24 Aligned_cols=133 Identities=21% Similarity=0.312 Sum_probs=84.8
Q ss_pred CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 000914 928 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 985 (1226)
Q Consensus 928 Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~---------------------- 985 (1226)
|++++.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 677888888887763 334567999999999999999999988722
Q ss_pred -cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000914 986 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1060 (1226)
Q Consensus 986 -~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k 1060 (1226)
.++.+....-.. .-....++.+...+... ..-|++|||+|.| + ....+.|+..|+.
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----~-------~~a~NaLLK~LEe---- 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----T-------EEAQNALLKTLEE---- 128 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHS----
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----h-------HHHHHHHHHHhcC----
Confidence 133333221100 11234556655554332 3469999999998 2 2334455555543
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhhccccccCCC
Q 000914 1061 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1093 (1226)
Q Consensus 1061 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 1093 (1226)
.+.++++|.+|+.++.|.+.+++|+ ..+.|+.
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 3467899999999999999999998 4565543
No 246
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=2.8e-06 Score=98.16 Aligned_cols=171 Identities=19% Similarity=0.208 Sum_probs=107.5
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-E---EEe---------cCcc
Q 000914 929 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-I---NIS---------MSSI 995 (1226)
Q Consensus 929 le~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~f-i---~v~---------~s~L 995 (1226)
+..+.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+.- . .+. .+++
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 44566677666542 23456799999999999999999998873321 0 000 0111
Q ss_pred cc-----cccc------chHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000914 996 TS-----KWFG------EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1060 (1226)
Q Consensus 996 ~s-----~~~G------e~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k 1060 (1226)
.- ...| -.-..|+.+...+...+ --|++||++|.|. ....|.|+..++.
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE---- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEE---- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhC----
Confidence 10 0001 11334566655554332 2599999999982 2234555555544
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHH
Q 000914 1061 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 1134 (1226)
Q Consensus 1061 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~ 1134 (1226)
.+.++++|.+|+.++.|.+.+++|+ ..+.|..|+.++-...|.. ... +..+...++..+.|-.+..+.
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~----~~~-~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLA----QGV-SERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH----cCC-ChHHHHHHHHHcCCCHHHHHH
Confidence 3456788888999999999999999 6889999998876666653 222 233345667777776554443
No 247
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.48 E-value=2.2e-07 Score=110.15 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=71.1
Q ss_pred ceeEecceEEEeccCccceEecCCC--CCccceEEEEeecCCcceEEEEEecCcceEEEC--CeecCCCceEEeeCCCEE
Q 000914 146 HLSMTGAVFTVGHNRQCDLYLKDPS--ISKNLCRLRRIENGGPSGALLEITGGKGEVEVN--GNVHPKDSQVVLRGGDEL 221 (1226)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd~~~~d~~--~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vN--g~~~~k~~~~~L~~gdei 221 (1226)
.+.+....++|||+..||+.+.|+. ||..||.|... +|. .+|+|.|+||| +|| |..+.+|..+.|+.||+|
T Consensus 18 ~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~g~--~~l~DlStNGT-~VN~sg~~l~~~~~~~L~~GD~I 92 (396)
T TIGR03354 18 QKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--DGA--YLLTDLSTNGV-FLNGSGSPLGRGNPVRLEQGDRL 92 (396)
T ss_pred EEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--CCE--EEEEECCCCCe-EECCCCCCCCCCCceEcCCCCEE
Confidence 5677788999999999999999999 99999999975 343 78999999999 799 999999999999999999
Q ss_pred EEccCCCeeEE
Q 000914 222 VFSPSGKHSYI 232 (1226)
Q Consensus 222 ~f~~~~~~ayi 232 (1226)
.|+...-..++
T Consensus 93 ~iG~~~lrv~~ 103 (396)
T TIGR03354 93 RLGDYEIRVSL 103 (396)
T ss_pred EECCEEEEEEe
Confidence 99876444443
No 248
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=8.4e-07 Score=102.07 Aligned_cols=141 Identities=17% Similarity=0.218 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhccC--hhhHHHHHHHHhcC-------CCCEEEEEeccCCCCccccCCCCCc
Q 000914 664 AINELFEVALNESKSSPLIVFVKDIEKSLTGN--NDAYGALKSKLENL-------PSNVVVIGSHTQLDSRKEKSHPGGL 734 (1226)
Q Consensus 664 ~~~~l~evl~~es~~~P~Ilfi~die~~l~~~--~~~~~~l~~~L~~l-------~g~vvvIgs~~~~d~~k~k~~~~~~ 734 (1226)
.|..||.-... | ..-++||||+.|.|||.+ +.+-...++.|..| +..+|++-++|
T Consensus 430 kiH~lFDWakk-S-~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtN-------------- 493 (630)
T KOG0742|consen 430 KIHKLFDWAKK-S-RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATN-------------- 493 (630)
T ss_pred HHHHHHHHHhh-c-ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccC--------------
Confidence 34455555543 2 356899999999999954 34445567778777 34677777777
Q ss_pred eeeccCcchhhhhcccCCCCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHH--hhhhhhhhccc-ch
Q 000914 735 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL--ERDVETLKGQS-NI 811 (1226)
Q Consensus 735 ~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRrw~~qL--e~dLpdlk~R~-nI 811 (1226)
+|-+|| -+++.+|..+|++++|..|.+.+-...-| ++..++..+.. -.
T Consensus 494 ----------------rpgdlD-------------sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~ 544 (630)
T KOG0742|consen 494 ----------------RPGDLD-------------SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKW 544 (630)
T ss_pred ----------------Cccchh-------------HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchh
Confidence 555565 56788888999999999998766443333 33344433321 11
Q ss_pred hHHHHH----hhhCC-CCcccchhhhcccCCCCHHHHHHHHhh
Q 000914 812 ISIRSV----LSRNG-LDCVDLESLCIKDQTLTTEGVEKIVGW 849 (1226)
Q Consensus 812 l~IhT~----L~~n~-l~~~dL~~La~~tkg~sgadI~~Lv~~ 849 (1226)
.++..+ +.-.+ +.+..+.+.|.+|.||+|-+|..|+-.
T Consensus 545 ~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 545 SHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred hHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 111111 11112 344567789999999999999999753
No 249
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=2e-06 Score=100.18 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=90.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------------------------EEEecCccc---------------
Q 000914 957 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------------------INISMSSIT--------------- 996 (1226)
Q Consensus 957 kP~~gVLL~GPPGTGKT~LArAIA~elg~~f-------------------------i~v~~s~L~--------------- 996 (1226)
+.+.++||+||+|+||+++|+++|+.+.+.. +.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4457899999999999999999999885422 111111000
Q ss_pred ---ccc-----ccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCc
Q 000914 997 ---SKW-----FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1064 (1226)
Q Consensus 997 ---s~~-----~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~ 1064 (1226)
+.. -.-.-..++.+...+... .-.|++||++|.|. ....|.|+..++. .+.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 000 001123455555444322 23599999999982 2344566666664 4467
Q ss_pred EEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHH
Q 000914 1065 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1106 (1226)
Q Consensus 1065 VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~l 1106 (1226)
+++|.+|+.++.|.+++++|+ ..+.|+.|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 899999999999999999999 78999999998888877653
No 250
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=9e-08 Score=113.05 Aligned_cols=48 Identities=40% Similarity=0.607 Sum_probs=39.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el 983 (1226)
...|.|+.|++..|+.|..... + .+++|++|||||||||||+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------G-----gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------G-----GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------c-----CCcEEEecCCCCchHHhhhhhcccC
Confidence 3478999999999999977654 2 3689999999999999999885443
No 251
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.43 E-value=6.6e-07 Score=107.10 Aligned_cols=176 Identities=18% Similarity=0.254 Sum_probs=101.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccchHHH-------HHHHHHHHHhcCCeEEEE
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVVFV 1024 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~-----~Ge~e~~-------I~~lF~~A~k~~PsILfI 1024 (1226)
..++|+|.+||||+++|+++.... +.+|+.++|..+.... +|..... ..+.|. ....++|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEEE
Confidence 579999999999999999998765 5799999998754321 1211000 001122 224589999
Q ss_pred ccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhhccccccCCCCCHH
Q 000914 1025 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1097 (1226)
Q Consensus 1025 DEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~e 1097 (1226)
||||.| +...+..+..++..-.....|.......++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 240 dei~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLr 313 (441)
T PRK10365 240 DEIGDI-----SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLR 313 (441)
T ss_pred eccccC-----CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 333344333333332222222222223467889888653 23445555566 36788889888
Q ss_pred HHHH----HHHHHHhhcc----c----CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000914 1098 NREK----IIRVILAKEE----L----ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1144 (1226)
Q Consensus 1098 eR~e----ILk~lL~k~~----l----~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~a 1144 (1226)
+|.+ +++.++.+.. . .++..+..|....=.-+.++|+++++.|+..+
T Consensus 314 eR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 314 QRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372 (441)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 7755 5555555421 1 12222333333331235577777777776543
No 252
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.43 E-value=3.2e-07 Score=111.47 Aligned_cols=153 Identities=24% Similarity=0.303 Sum_probs=92.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec----
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISM---- 992 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg----~~fi~v~~---- 992 (1226)
..|.++.|...+++.+.-.+ ....+++|+||||+|||+|++.|+..+. -..+.+..
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 36778888877666543211 1336799999999999999999987652 11111111
Q ss_pred --C-----ccc-------------cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhh
Q 000914 993 --S-----SIT-------------SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1052 (1226)
Q Consensus 993 --s-----~L~-------------s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~ 1052 (1226)
. .+. ...+|.....-...+..|.+ ++|||||++.+ +...++.+.+.+++-..
T Consensus 252 ~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 252 VNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQI 323 (506)
T ss_pred hccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcE
Confidence 0 000 00122211122245666655 89999999876 33344445544443333
Q ss_pred hcc--CCcccCCCcEEEEEecCCCC---------------------CCcHHHHhhccccccCCCCCHH
Q 000914 1053 NWD--GLRTKDKERVLVLAATNRPF---------------------DLDEAVVRRLPRRLMVNLPDAP 1097 (1226)
Q Consensus 1053 ~ld--gl~~k~~~~VlVIaTTN~p~---------------------~Ld~aLlrRF~~~I~l~lPd~e 1097 (1226)
.+. +.....+.++.+|+|+|+.. .+...+++||+..+.++.|+.+
T Consensus 324 ~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 324 HLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 222 22222356899999999752 4777999999998999888644
No 253
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.42 E-value=1.3e-06 Score=97.43 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=67.4
Q ss_pred hhcCCCCCCCCCCCcccccCc-HH---HHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 000914 909 LLADVIPPSDIGVTFDDIGAL-EN---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 983 (1226)
Q Consensus 909 ll~~vIp~~e~~~tfddI~Gl-e~---vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el- 983 (1226)
+....|++.....+|+++... +. +...+.+++.. |. ....+++|+|++|||||+|+.+||+++
T Consensus 57 ~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 57 FNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred HHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345556766667789886533 22 33333333321 11 112489999999999999999999998
Q ss_pred --CCcEEEEecCccccccccc---hHHHHHHHHHHHHhcCCeEEEEcccccc
Q 000914 984 --GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 984 --g~~fi~v~~s~L~s~~~Ge---~e~~I~~lF~~A~k~~PsILfIDEID~L 1030 (1226)
+..++.++.+++....... .......++.... ...+|+|||++..
T Consensus 125 ~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 125 LRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred hcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 7788888887766432211 1111223333322 4689999999875
No 254
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.42 E-value=1.3e-06 Score=86.17 Aligned_cols=36 Identities=39% Similarity=0.517 Sum_probs=32.8
Q ss_pred eeecCCCChhHHHHHHHHHHHhhhCCeEEEEeccCCCC
Q 000914 495 ILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (1226)
Q Consensus 495 ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~~~~g 532 (1226)
|||.||+| .++..|||+||++++++++.+|...+.+
T Consensus 1 ill~G~~G--~GKT~l~~~la~~l~~~~~~i~~~~~~~ 36 (132)
T PF00004_consen 1 ILLHGPPG--TGKTTLARALAQYLGFPFIEIDGSELIS 36 (132)
T ss_dssp EEEESSTT--SSHHHHHHHHHHHTTSEEEEEETTHHHT
T ss_pred CEEECcCC--CCeeHHHHHHHhhccccccccccccccc
Confidence 79999999 9999999999999999999999866553
No 255
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.41 E-value=1.8e-06 Score=107.82 Aligned_cols=48 Identities=31% Similarity=0.475 Sum_probs=41.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 984 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg 984 (1226)
..|+++.|++++++.|...+.. ..++||+||||||||++|+++++.+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5789999999999998876652 13799999999999999999998774
No 256
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.39 E-value=2.2e-07 Score=94.39 Aligned_cols=106 Identities=24% Similarity=0.483 Sum_probs=64.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1036 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg---~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1036 (1226)
..|||+|++||||+++|++|....+ .+|+.++|..+. ..++..+ ..++|||+|||.| +
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L-----~ 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL-----S 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC-----C
Confidence 4699999999999999999998874 366666666532 3344444 5699999999998 3
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhhccccccCCCCC
Q 000914 1037 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPD 1095 (1226)
Q Consensus 1037 ~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd 1095 (1226)
...+..+...+.. . ...++.+|+++..+ ..+++.+..||. .+.+.+|.
T Consensus 83 ~~~Q~~L~~~l~~-------~---~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lPp 137 (138)
T PF14532_consen 83 PEAQRRLLDLLKR-------Q---ERSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLPP 137 (138)
T ss_dssp HHHHHHHHHHHHH-------C---TTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE--
T ss_pred HHHHHHHHHHHHh-------c---CCCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCCC
Confidence 2223222222221 1 12456777777543 246677777774 34555553
No 257
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=9e-06 Score=94.00 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=97.2
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 000914 929 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 986 (1226)
Q Consensus 929 le~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~---------------------- 986 (1226)
+....+.|...+.. .+.+..+||+||.|+||+.+|+++|+.+-+.
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 45666777666542 3445789999999999999999999987321
Q ss_pred -EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccC
Q 000914 987 -FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1061 (1226)
Q Consensus 987 -fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~ 1061 (1226)
|+.+.... .++.+ .-..++.+...+... .-.|++||++|.|. ....|.|+..++. +
T Consensus 75 D~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----P 135 (319)
T PRK06090 75 DLHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE----P 135 (319)
T ss_pred CEEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----C
Confidence 22222110 00111 123455554444332 23699999999982 2344566666554 3
Q ss_pred CCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHH
Q 000914 1062 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1105 (1226)
Q Consensus 1062 ~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~ 1105 (1226)
+.++++|..|+.++.|.+.+++|+ ..+.|+.|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999999 6889999998877776643
No 258
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.35 E-value=2.9e-06 Score=105.11 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=95.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccch--HHHH--------HHHHHHHHhcCCeEEEEccc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEV 1027 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg--~~fi~v~~s~L~s~~~Ge~--e~~I--------~~lF~~A~k~~PsILfIDEI 1027 (1226)
.||||.|+.||||++++++++.-+. .+|+.+....-....+|.. +..+ .+++..|.. +||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5899999999999999999999884 5888877655444445543 1111 123333333 89999999
Q ss_pred cccccCCCCCchHHHHHHHHHhhhhhc--cCCcccCCCcEEEEEecCCC---CCCcHHHHhhccccccCCCCCHHH
Q 000914 1028 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPN 1098 (1226)
Q Consensus 1028 D~L~~~r~~~~~~e~l~~vl~~Ll~~l--dgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~l~lPd~ee 1098 (1226)
..+ .+...+.+...+++-.+.+ +|.....+.++++|++-|.. +.|.+.++.||+..+.+..|...+
T Consensus 103 n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 103 ERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred ccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 877 4555666677776666555 67666667889999985432 458999999999999998877554
No 259
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.34 E-value=2.8e-06 Score=105.73 Aligned_cols=189 Identities=27% Similarity=0.330 Sum_probs=113.4
Q ss_pred hHHHHHhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000914 903 NEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 982 (1226)
Q Consensus 903 ~e~~~~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~e 982 (1226)
.+....+...++| .|.|.+++|+.|.-.+.- .-......+...+.--+|||.|.||||||.|.+.+++-
T Consensus 274 ~~i~~~l~~SiaP---------sIyG~e~VKkAilLqLfg--Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~ 342 (682)
T COG1241 274 PDIYDILIKSIAP---------SIYGHEDVKKAILLQLFG--GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKL 342 (682)
T ss_pred CcHHHHHHHHhcc---------cccCcHHHHHHHHHHhcC--CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhh
Confidence 3344444455555 578999999888544332 11111122222333457999999999999999999988
Q ss_pred hCCcEEE-EecCc---cccccccc---hHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhc
Q 000914 983 AGANFIN-ISMSS---ITSKWFGE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1054 (1226)
Q Consensus 983 lg~~fi~-v~~s~---L~s~~~Ge---~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~l 1054 (1226)
+-..++. -.++. |....... ++..+ .+++.+|. ++|..|||+|.+ +.....++..++.+-...+
T Consensus 343 aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD---~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsI 414 (682)
T COG1241 343 APRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLAD---GGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISI 414 (682)
T ss_pred CCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEec---CCEEEEEeccCC-----ChHHHHHHHHHHHhcEeee
Confidence 7433322 11111 11110000 01111 11222333 489999999988 3344555555555544443
Q ss_pred --cCCcccCCCcEEEEEecCCCC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHhhc
Q 000914 1055 --DGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1110 (1226)
Q Consensus 1055 --dgl~~k~~~~VlVIaTTN~p~-------------~Ld~aLlrRF~~~I~l-~lPd~eeR~eILk~lL~k~ 1110 (1226)
.|+...-+.+.-|+||+|+.+ +|++.+++|||..+.+ ..|+.+.-..+.++++..+
T Consensus 415 aKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 415 AKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred cccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 344455567889999999864 6788999999976555 5688777777777777654
No 260
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.2e-05 Score=102.11 Aligned_cols=127 Identities=23% Similarity=0.317 Sum_probs=87.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc---
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--- 996 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~k--P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~--- 996 (1226)
.++|++++...+-+.|.. ++.++.+ |...+||.||.|+|||-||+++|..+ .-.++.++++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~--------sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRR--------SRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHh--------hhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 588999999999998875 2223444 56679999999999999999999998 4578999998632
Q ss_pred ---c---ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCccc-------CCC
Q 000914 997 ---S---KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKE 1063 (1226)
Q Consensus 997 ---s---~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k-------~~~ 1063 (1226)
+ .|.|.. ....+.+..++.+-+||+|||||.- ...+++.|+..+|..... .-.
T Consensus 635 kligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 635 KLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred hccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 2 133432 2334555555656699999999864 123445455555433222 235
Q ss_pred cEEEEEecCC
Q 000914 1064 RVLVLAATNR 1073 (1226)
Q Consensus 1064 ~VlVIaTTN~ 1073 (1226)
+++||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 7899999875
No 261
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.27 E-value=2.7e-06 Score=91.64 Aligned_cols=180 Identities=19% Similarity=0.283 Sum_probs=92.8
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEecCc-c-------
Q 000914 927 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISMSS-I------- 995 (1226)
Q Consensus 927 ~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~---~fi~v~~s~-L------- 995 (1226)
.|.++..+.|.+++.. .+...++|+||.|+|||+|++.+...+.- ..+.+.... .
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 4566666677665541 12367999999999999999999998832 111221111 0
Q ss_pred --------------ccc-------------cccchHHHHHHHHHHHHhcC-CeEEEEccccccc-cCCCCCchHHHHHHH
Q 000914 996 --------------TSK-------------WFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSML-GRRENPGEHEAMRKM 1046 (1226)
Q Consensus 996 --------------~s~-------------~~Ge~e~~I~~lF~~A~k~~-PsILfIDEID~L~-~~r~~~~~~e~l~~v 1046 (1226)
... ........+..++....+.. ..||+|||++.+. .... ... +
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~---~~~----~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE---DKD----F 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT---THH----H
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc---hHH----H
Confidence 000 00112344556666655443 4899999999996 2221 122 2
Q ss_pred HHhhhhhccCCcccCCCcEEEEEecCCCC------CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhcc-c-CChhcH
Q 000914 1047 KNEFMVNWDGLRTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-L-ASDVDL 1118 (1226)
Q Consensus 1047 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~------~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~~-l-~~dvdl 1118 (1226)
+..+...++..... .++.+|.++.... .-...+..|+.. +.++..+.++..++++..+.... + .++.++
T Consensus 141 ~~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhcccc--CCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 22333333322211 3344443333211 111234456755 89999999999999999877651 1 267788
Q ss_pred HHHHHHcCCCcH
Q 000914 1119 EGIANMADGYSG 1130 (1226)
Q Consensus 1119 ~~LA~~TeGySg 1130 (1226)
+.+...+.|+.+
T Consensus 218 ~~i~~~~gG~P~ 229 (234)
T PF01637_consen 218 EEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHTT-HH
T ss_pred HHHHHHhCCCHH
Confidence 999999988643
No 262
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.26 E-value=2.7e-06 Score=96.12 Aligned_cols=158 Identities=19% Similarity=0.221 Sum_probs=103.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEec
Q 000914 919 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISM 992 (1226)
Q Consensus 919 ~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~------fi~v~~ 992 (1226)
....++++++.+++...+.++... .+- .++|+|||||||||....+.|..+-.+ +..++.
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~~-------------~~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelna 101 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSGM-------------PGL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNA 101 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhccC-------------CCC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhc
Confidence 345678899999998888886431 112 389999999999999999999988553 122333
Q ss_pred CccccccccchHHHHHHHHHHHHh-------cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcE
Q 000914 993 SSITSKWFGEGEKYVKAVFSLASK-------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1065 (1226)
Q Consensus 993 s~L~s~~~Ge~e~~I~~lF~~A~k-------~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~V 1065 (1226)
++-.+ .+. ...--..|..++. ..+..|++||.|.+. ...|.++++++..+. .++
T Consensus 102 Sd~rg--id~-vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----~~AQnALRRviek~t-----------~n~ 162 (360)
T KOG0990|consen 102 SDDRG--IDP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----RDAQNALRRVIEKYT-----------ANT 162 (360)
T ss_pred cCccC--Ccc-hHHHHHHHHhhccceeccccCceeEEEecchhHhh-----HHHHHHHHHHHHHhc-----------cce
Confidence 32111 111 1112234444442 256799999999883 334556666555442 456
Q ss_pred EEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhc
Q 000914 1066 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 1110 (1226)
Q Consensus 1066 lVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k~ 1110 (1226)
.++..+|.+..+.+++.+|| ..+.+...+...-...+.+++..+
T Consensus 163 rF~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 163 RFATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred EEEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcc
Confidence 77777899999999999998 456676666666666666665543
No 263
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.24 E-value=1.1e-05 Score=89.78 Aligned_cols=91 Identities=23% Similarity=0.328 Sum_probs=58.9
Q ss_pred CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC-------------CCCCcHHHHhh
Q 000914 1018 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------------PFDLDEAVVRR 1084 (1226)
Q Consensus 1018 ~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~-------------p~~Ld~aLlrR 1084 (1226)
-|+||||||++.| + -+ .+..|...+.. +-.-+||+++|+ |+-+++.++.|
T Consensus 296 vPGVLFIDEVhML-----D---iE----cFTyL~kalES-----~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----D---IE----CFTYLHKALES-----PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhh-----h---hH----HHHHHHHHhcC-----CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 4889999999877 1 11 11112222221 112356666665 67888999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcC
Q 000914 1085 LPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1126 (1226)
Q Consensus 1085 F~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~Te 1126 (1226)
+ .+|...+.+.++.++|++...+.+++. ++..+..|+....
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGT 400 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhcc
Confidence 8 567777778888889999888777665 4555666666543
No 264
>PRK08181 transposase; Validated
Probab=98.24 E-value=2.9e-06 Score=96.01 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=48.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCeEEEEcccccc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge-~e~~I~~lF~~A~k~~PsILfIDEID~L 1030 (1226)
.+++|+||||||||+||.+|++++ |..++.++..++....... .+......+... ..+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 579999999999999999999766 7788888887766543111 011122233322 34689999999876
No 265
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.19 E-value=3.2e-05 Score=86.57 Aligned_cols=112 Identities=19% Similarity=0.301 Sum_probs=72.7
Q ss_pred CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC------------CCCCcHHHHhhc
Q 000914 1018 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRL 1085 (1226)
Q Consensus 1018 ~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF 1085 (1226)
-|+||||||++.| +-....++++.+.. +-.+++ |.+||+ |+-++-.|+.|.
T Consensus 288 vpGVLFIDEvHML-----DIEcFsFlNrAlE~-----------d~~Pii-imaTNrgit~iRGTn~~SphGiP~D~lDR~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----DIECFSFLNRALEN-----------DMAPII-IMATNRGITRIRGTNYRSPHGIPIDLLDRM 350 (454)
T ss_pred ccceEEEeeehhh-----hhHHHHHHHHHhhh-----------ccCcEE-EEEcCCceEEeecCCCCCCCCCcHHHhhhh
Confidence 3789999999877 22222333333221 113344 444543 678889999998
Q ss_pred cccccCCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHH
Q 000914 1086 PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1147 (1226)
Q Consensus 1086 ~~~I~l~lPd~eeR~eILk~lL~k~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aire 1147 (1226)
.+|.-.+.+.++..+||+..+..+.+. .+..+..|.......+-+--.+|+..|.+.+.++
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr 412 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR 412 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 677778889999999999999887654 3444555555555555555567777777766665
No 266
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=9.4e-06 Score=94.25 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=85.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecCcc---cccc-ccchHHHH
Q 000914 957 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSI---TSKW-FGEGEKYV 1007 (1226)
Q Consensus 957 kP~~gVLL~GPPGTGKT~LArAIA~elg~-------------------------~fi~v~~s~L---~s~~-~Ge~e~~I 1007 (1226)
+.+..+||+||+|+|||++|+.+|+.+.+ .|+.+....- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44578999999999999999999998743 1333332110 0000 00123456
Q ss_pred HHHHHHHHhc----CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHh
Q 000914 1008 KAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1083 (1226)
Q Consensus 1008 ~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr 1083 (1226)
+.+...+... ...|++||+++.| +.. ..+.++..++... ..+.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----d~~-------a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----NLQ-------AANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----CHH-------HHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 7766666542 2369999999988 211 2233333333321 235667788888899999999
Q ss_pred hccccccCCCCCHHHHHHHHHH
Q 000914 1084 RLPRRLMVNLPDAPNREKIIRV 1105 (1226)
Q Consensus 1084 RF~~~I~l~lPd~eeR~eILk~ 1105 (1226)
|+ ..+.|+.|+.++....|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 7889999998887766653
No 267
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.16 E-value=4e-05 Score=94.02 Aligned_cols=196 Identities=18% Similarity=0.266 Sum_probs=113.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc---
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--- 996 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~--- 996 (1226)
..+.+|+.-..+-.++++..+..-+ .. ..+.+-+||+||+|||||++++.||+++++.+++...+...
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~------~~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMF------SG---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHh------cc---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 4567788888877788877776311 11 12234589999999999999999999999998886433220
Q ss_pred ----cccccc---hH---HH---HHHH-HHHHHh-----------cCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 997 ----SKWFGE---GE---KY---VKAV-FSLASK-----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 997 ----s~~~Ge---~e---~~---I~~l-F~~A~k-----------~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
..+.+. .. .. ...+ +..++. ..+.||+|+|+-.++.. .....+.++.+++
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-----~~~~f~~~L~~~l 160 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-----DTSRFREALRQYL 160 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch-----hHHHHHHHHHHHH
Confidence 011110 00 01 1111 111111 24579999999765421 1234444555544
Q ss_pred hhccCCcccCCC-cEEEEEe-c------CCC--------CCCcHHHHhhc-cccccCCCCCHHHHHHHHHHHHhhc----
Q 000914 1052 VNWDGLRTKDKE-RVLVLAA-T------NRP--------FDLDEAVVRRL-PRRLMVNLPDAPNREKIIRVILAKE---- 1110 (1226)
Q Consensus 1052 ~~ldgl~~k~~~-~VlVIaT-T------N~p--------~~Ld~aLlrRF-~~~I~l~lPd~eeR~eILk~lL~k~---- 1110 (1226)
.. ... +++||.+ + |.. ..+.+.++... -.+|.|.+-...-..+.|+.++..+
T Consensus 161 ~~-------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 161 RS-------SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred Hc-------CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 32 112 5777766 1 111 13456666622 2568888878777778888877765
Q ss_pred ----ccCChh-cHHHHHHHcCCCcHHHHHHH
Q 000914 1111 ----ELASDV-DLEGIANMADGYSGSDLKNL 1136 (1226)
Q Consensus 1111 ----~l~~dv-dl~~LA~~TeGySgsDL~~L 1136 (1226)
...... .++.|+..+.|--.+.|.+|
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~L 264 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNGDIRSAINNL 264 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCchHHHHHHHH
Confidence 111222 37788887777655555554
No 268
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.14 E-value=4.3e-06 Score=101.77 Aligned_cols=174 Identities=25% Similarity=0.332 Sum_probs=111.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCccc-----cccccchHHHHH--------HHHHHHHhcCCeEEEE
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSIT-----SKWFGEGEKYVK--------AVFSLASKIAPSVVFV 1024 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el--g~~fi~v~~s~L~-----s~~~Ge~e~~I~--------~lF~~A~k~~PsILfI 1024 (1226)
-.+||.|.+||||-.||++|.+.. ..+|+.+||..+. +.+||....... ..++.|. .+.+|+
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlFl 413 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLFL 413 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccHH
Confidence 469999999999999999997766 5789999997743 345553322222 2223332 279999
Q ss_pred ccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-------CCCcHHHHhhccccccCCCCCHH
Q 000914 1025 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1097 (1226)
Q Consensus 1025 DEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~l~lPd~e 1097 (1226)
|||..| +-..|..+.+++++-...--|-.. .+..|.||+||++. ..+-+.+.=|+ ..+.|.+|...
T Consensus 414 deIgd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr 486 (606)
T COG3284 414 DEIGDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLR 486 (606)
T ss_pred HHhhhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchh
Confidence 999988 445677778888877665555444 56889999999874 12223333354 35667788877
Q ss_pred HHHH---HHHHHHhhcccC-ChhcHHHHHHHcC-CC--cHHHHHHHHHHHHhh
Q 000914 1098 NREK---IIRVILAKEELA-SDVDLEGIANMAD-GY--SGSDLKNLCVTAAHC 1143 (1226)
Q Consensus 1098 eR~e---ILk~lL~k~~l~-~dvdl~~LA~~Te-Gy--SgsDL~~L~~~Aa~~ 1143 (1226)
+|.. +|.+++.+..-. -..+-+.++.... .| +.++|.++++.++..
T Consensus 487 ~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 487 ERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAAL 539 (606)
T ss_pred cccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Confidence 7654 556666554321 2223333333332 22 557888888877644
No 269
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.13 E-value=4.1e-07 Score=105.73 Aligned_cols=175 Identities=26% Similarity=0.339 Sum_probs=91.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc-----ccccc
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-----ITSKW 999 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~-----L~s~~ 999 (1226)
.|.|.+.+|..+.-.+...... ....+...+..-+|||.|.||||||.|.+.+++.....+ ++++.. |+...
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~--~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEK--NDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SC--CCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhcccc--ccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 5788888877663222111110 000011123345799999999999999998876553333 222211 21111
Q ss_pred c---cchHHHHH-HHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhcc--CCcccCCCcEEEEEecCC
Q 000914 1000 F---GEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNR 1073 (1226)
Q Consensus 1000 ~---Ge~e~~I~-~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ld--gl~~k~~~~VlVIaTTN~ 1073 (1226)
. ...+..+. +.+-.|.+ +|++|||+|.+ .......+..++++-...+. |+...-+.+.-|+|++|+
T Consensus 102 ~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--
T ss_pred ccccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhh
Confidence 0 01111111 35566665 99999999998 33345555555554433332 233334577899999987
Q ss_pred CC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHhhc
Q 000914 1074 PF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1110 (1226)
Q Consensus 1074 p~-------------~Ld~aLlrRF~~~I~l-~lPd~eeR~eILk~lL~k~ 1110 (1226)
.. .+++.+++|||.++.+ +.|+.+.-..+.++++...
T Consensus 174 ~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 174 KFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 64 5778999999977655 6778777777888777654
No 270
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.13 E-value=1.3e-05 Score=97.72 Aligned_cols=174 Identities=22% Similarity=0.236 Sum_probs=100.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EecCc---cccc--
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSS---ITSK-- 998 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~-v~~s~---L~s~-- 998 (1226)
.|.|++++|+.|.-.+. -.....+.+++-.+.--+|||+|.||||||.|.+.+++-+..-.+. -.++. +..-
T Consensus 430 sIye~edvKkglLLqLf--GGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLF--GGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHh--cCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 57899999988744332 2222233333334444679999999999999999999877321110 00000 0000
Q ss_pred cccchHHHH--HHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHh--hhhhccCCcccCCCcEEEEEecCCC
Q 000914 999 WFGEGEKYV--KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE--FMVNWDGLRTKDKERVLVLAATNRP 1074 (1226)
Q Consensus 999 ~~Ge~e~~I--~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~--Ll~~ldgl~~k~~~~VlVIaTTN~p 1074 (1226)
.-++..+.+ ..++.++ ..+|..|||+|.| +...+..+.+++++ +-....|+...-+.+.-|||++|+.
T Consensus 508 rd~dtkqlVLesGALVLS---D~GiCCIDEFDKM-----~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~ 579 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLS---DNGICCIDEFDKM-----SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPI 579 (804)
T ss_pred ecCccceeeeecCcEEEc---CCceEEchhhhhh-----hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccc
Confidence 000000000 0011112 2389999999999 33344455555543 3334456666667888999999963
Q ss_pred C-------------CCcHHHHhhccccc-cCCCCCHHHHHHHHHHHHh
Q 000914 1075 F-------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILA 1108 (1226)
Q Consensus 1075 ~-------------~Ld~aLlrRF~~~I-~l~lPd~eeR~eILk~lL~ 1108 (1226)
. .|++.+++||+.++ .++.||...-+.|-.++..
T Consensus 580 ~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 580 RSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred cccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHH
Confidence 2 67899999998754 4477776644555555443
No 271
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.13 E-value=6.2e-06 Score=95.85 Aligned_cols=111 Identities=21% Similarity=0.344 Sum_probs=66.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc---hHHHHHHHHHHHHhcCCeEEEEccccccccC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1033 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge---~e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1033 (1226)
.+++|+||+|||||+||.+||+++ |..++.++..++....... ........+.. -....+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCCC--
Confidence 689999999999999999999987 7888888887765532110 00011111222 2245799999997652
Q ss_pred CCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC-CC----CcHHHHhhc
Q 000914 1034 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-FD----LDEAVVRRL 1085 (1226)
Q Consensus 1034 r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p-~~----Ld~aLlrRF 1085 (1226)
.+....+.+..+++..+.. +-.+|.|||.+ .. +++.+.+|+
T Consensus 260 -~t~~~~~~Lf~iin~R~~~----------~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 260 -ITEFSKSELFNLINKRLLR----------QKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred -CCHHHHHHHHHHHHHHHHC----------CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 1222333444444444321 12356667653 22 455677775
No 272
>PF13173 AAA_14: AAA domain
Probab=98.10 E-value=1e-05 Score=81.21 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=47.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEcccccc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg--~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L 1030 (1226)
+-++|+||.|+|||++++.+++.+. -+++.+++.+.........+ +...|.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 3589999999999999999999886 78888887764332111111 222232222225689999999977
No 273
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.08 E-value=1e-05 Score=95.43 Aligned_cols=225 Identities=24% Similarity=0.308 Sum_probs=134.9
Q ss_pred hhHHHHHhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccC-ChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 000914 902 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQ-RPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 980 (1226)
Q Consensus 902 ~~e~~~~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~-~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA 980 (1226)
..++.+.+...+.| +|.|.+++|+.|.-++.-... .+. .+--.+..-+|+|.|.||+-|+.|.++|.
T Consensus 329 ~~d~yekLa~SiAP---------EIyGheDVKKaLLLlLVGgvd~~~~---dGMKIRGdINicLmGDPGVAKSQLLkyi~ 396 (721)
T KOG0482|consen 329 EGDFYEKLAASIAP---------EIYGHEDVKKALLLLLVGGVDKSPG---DGMKIRGDINICLMGDPGVAKSQLLKYIS 396 (721)
T ss_pred cccHHHHHHHhhch---------hhccchHHHHHHHHHhhCCCCCCCC---CCceeecceeEEecCCCchhHHHHHHHHH
Confidence 44455555555555 689999999998665542111 110 11112334569999999999999999998
Q ss_pred HHhCCcEEE---------EecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 981 TEAGANFIN---------ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 981 ~elg~~fi~---------v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
+-.-...+. +.++-+.....|+.. .-.+.+.+|.. +|..|||+|.+. ..+..+..+++++-.
T Consensus 397 rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~-LEGGALVLAD~---GICCIDEfDKM~-----e~DRtAIHEVMEQQT 467 (721)
T KOG0482|consen 397 RLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMV-LEGGALVLADG---GICCIDEFDKMD-----ESDRTAIHEVMEQQT 467 (721)
T ss_pred hcCcccceecCCCCCccccchhhhcCCCCCeeE-eccceEEEccC---ceEeehhhhhhh-----hhhhHHHHHHHHhhh
Confidence 776332222 221111111111110 00112334444 899999999993 233444555555444
Q ss_pred hh--ccCCcccCCCcEEEEEecCCCC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHhhc--ccC
Q 000914 1052 VN--WDGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE--ELA 1113 (1226)
Q Consensus 1052 ~~--ldgl~~k~~~~VlVIaTTN~p~-------------~Ld~aLlrRF~~~I~l-~lPd~eeR~eILk~lL~k~--~l~ 1113 (1226)
.. -.|+.+.-+.+.-|+|++|+.+ .|+.++++||+..+.+ +.|+.+.-..+.+++..-+ .-.
T Consensus 468 ISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~q 547 (721)
T KOG0482|consen 468 ISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQ 547 (721)
T ss_pred hhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCC
Confidence 33 3466666778899999998742 6889999999976555 7799888888777755321 111
Q ss_pred -----ChhcHH------HHHHHcCCCcHHHHHHHHHHHHhhhhHH
Q 000914 1114 -----SDVDLE------GIANMADGYSGSDLKNLCVTAAHCPIRE 1147 (1226)
Q Consensus 1114 -----~dvdl~------~LA~~TeGySgsDL~~L~~~Aa~~aire 1147 (1226)
..++++ .+|+....+.+.+|..-+..|.....++
T Consensus 548 p~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rre 592 (721)
T KOG0482|consen 548 PPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRRE 592 (721)
T ss_pred CCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 112222 3455556677888888777776554443
No 274
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.05 E-value=1.6e-05 Score=91.68 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=48.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge~-e~~I~~lF~~A~k~~PsILfIDEID~L 1030 (1226)
.+|++|+||+|||||+||.|||+++ |..+..+..++++...-... ...+...+... ....+|+||||..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 4689999999999999999999998 78888888777654321110 00122222222 24579999999753
No 275
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=8.2e-06 Score=92.20 Aligned_cols=75 Identities=31% Similarity=0.326 Sum_probs=60.9
Q ss_pred cccCCCcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCe
Q 000914 442 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1226)
Q Consensus 442 ~vv~~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~ 521 (1226)
-++|+.+.+=-||+-=|= -+-|+-|.+-|..-|+-.+. +-..+|-+-+|=|||.|||| .+++.|.||||+++-.|
T Consensus 130 w~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheee
Confidence 356666666678886444 67888888888888877655 44568999999999999999 89999999999999888
No 276
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.04 E-value=4.5e-06 Score=88.88 Aligned_cols=70 Identities=27% Similarity=0.461 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-HHHHHHHHHHHHhcCCeEEEEccccc
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDS 1029 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge~-e~~I~~lF~~A~k~~PsILfIDEID~ 1029 (1226)
...+++|+||+|||||+||.+|++++ |..+..++..+|+....... .......+.... ...+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 34789999999999999999999887 88888899887765422110 011222333222 357999999964
No 277
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.03 E-value=8e-06 Score=68.69 Aligned_cols=50 Identities=32% Similarity=0.447 Sum_probs=43.6
Q ss_pred EEEeccC-ccceEecCCCCCccceEEEEeecCCcceEEEEEec-CcceEEECCeec
Q 000914 154 FTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVH 207 (1226)
Q Consensus 154 ~t~G~~~-~cd~~~~d~~~s~~~c~l~~~~~~g~~~a~le~~~-~~G~v~vNg~~~ 207 (1226)
++|||.. .|++.+.++.+|..||+|..... + ..+|++.+ ++|| +|||+.+
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~-~--~~~i~d~~s~~gt-~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGG-G--RFYLIDLGSTNGT-FVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCC-C--eEEEEECCCCCCe-eECCEEC
Confidence 5899999 99999999999999999987543 3 47899999 8888 7999875
No 278
>PRK06526 transposase; Provisional
Probab=98.02 E-value=6.1e-06 Score=92.69 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=45.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCeEEEEcccccc
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge-~e~~I~~lF~~A~k~~PsILfIDEID~L 1030 (1226)
..+++|+||||||||+||.+|+.++ |..++.+++.++....... ....+...+.. -..+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccC
Confidence 4689999999999999999998876 6666666666554332110 00111122221 234689999999876
No 279
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.01 E-value=1.1e-05 Score=101.38 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=71.5
Q ss_pred CCCceeE---ecceEEEeccCccce-----EecCCCCCccceEEEEeecCCcceEEEEEecC-cceEEECCee-----cC
Q 000914 143 QNSHLSM---TGAVFTVGHNRQCDL-----YLKDPSISKNLCRLRRIENGGPSGALLEITGG-KGEVEVNGNV-----HP 208 (1226)
Q Consensus 143 ~~p~~~i---~~~~~t~G~~~~cd~-----~~~d~~~s~~~c~l~~~~~~g~~~a~le~~~~-~G~v~vNg~~-----~~ 208 (1226)
+...|+| .+.-|+|||..+||+ .++|+.+|+.|.+|... ++. .||||.++ ||| ||||+. +.
T Consensus 545 ~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~--~~~--~~~~Dl~S~nGT-~v~~~~~~r~~~~ 619 (668)
T PLN02927 545 VSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYK--DGA--FFLMDLRSEHGT-YVTDNEGRRYRAT 619 (668)
T ss_pred ccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEE--CCE--EEEEECCCCCcc-EEeCCCCceEecC
Confidence 3456888 678899999999997 99999999999999986 333 78999876 999 798888 55
Q ss_pred CCceEEeeCCCEEEEccCCCeeE
Q 000914 209 KDSQVVLRGGDELVFSPSGKHSY 231 (1226)
Q Consensus 209 k~~~~~L~~gdei~f~~~~~~ay 231 (1226)
-|..+.|++||+|.|+..++.+|
T Consensus 620 p~~~~~l~~~d~I~~g~~~~~~f 642 (668)
T PLN02927 620 PNFPARFRSSDIIEFGSDKKAAF 642 (668)
T ss_pred CCCceEeCCCCEEEeCCCcceeE
Confidence 67789999999999999887655
No 280
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.00 E-value=2.9e-05 Score=76.96 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=48.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecCccccc--------------cc--cchHHHHHHHHHHHH
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITSK--------------WF--GEGEKYVKAVFSLAS 1015 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el--------g~~fi~v~~s~L~s~--------------~~--Ge~e~~I~~lF~~A~ 1015 (1226)
..++|+||+|+|||++++.++..+ ..+++.++++..... .. .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 569999999999999999999887 678888887553210 01 112333444445555
Q ss_pred hcCCeEEEEccccccc
Q 000914 1016 KIAPSVVFVDEVDSML 1031 (1226)
Q Consensus 1016 k~~PsILfIDEID~L~ 1031 (1226)
.....+|+|||+|.|.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5555699999999974
No 281
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.97 E-value=2.4e-05 Score=87.95 Aligned_cols=70 Identities=24% Similarity=0.416 Sum_probs=48.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHH-HHH-HHHHHHHhcCCeEEEEcccccc
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK-YVK-AVFSLASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge~e~-~I~-~lF~~A~k~~PsILfIDEID~L 1030 (1226)
+.+++|+||||+|||+||.||++++ |..++.++.++++...-..... ... .+... -....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~--l~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE--LKKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH--hhcCCEEEEecccCc
Confidence 4789999999999999999999988 7889999988876643211100 011 11111 123479999999765
No 282
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.95 E-value=7e-05 Score=90.83 Aligned_cols=215 Identities=18% Similarity=0.234 Sum_probs=127.6
Q ss_pred hhHHHHHhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHH
Q 000914 902 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVA 980 (1226)
Q Consensus 902 ~~e~~~~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l-~kP~~gVLL~GPPGTGKT~LArAIA 980 (1226)
.....+.+...+.| .|.|.+.+|.-|.-.+.--.... ...+. .+.--+|+|.|.|||||+.+.++.+
T Consensus 332 ~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~K~---a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~ 399 (764)
T KOG0480|consen 332 DENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVHKS---AGEGTSLRGDINVCIVGDPGTGKSQFLKAVC 399 (764)
T ss_pred CchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCcccc---CCCCccccCCceEEEeCCCCccHHHHHHHHh
Confidence 44455556666555 67899999988754443211111 11111 2233469999999999999999998
Q ss_pred HHhCCcEEEEecC----ccccccccc---hHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhh
Q 000914 981 TEAGANFINISMS----SITSKWFGE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1052 (1226)
Q Consensus 981 ~elg~~fi~v~~s----~L~s~~~Ge---~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~ 1052 (1226)
.-+-..++..--+ .|....+.. .+-.+ .+++-+|.. +|..|||+|.| +..+|.++.+.+++-..
T Consensus 400 ~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADn---GICCIDEFDKM-----d~~dqvAihEAMEQQtI 471 (764)
T KOG0480|consen 400 AFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADN---GICCIDEFDKM-----DVKDQVAIHEAMEQQTI 471 (764)
T ss_pred ccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccC---ceEEechhccc-----ChHhHHHHHHHHHhhee
Confidence 7764333321111 111110000 00000 112223333 89999999998 33356666666655443
Q ss_pred hc--cCCcccCCCcEEEEEecCCCC-------------CCcHHHHhhcccc-ccCCCCCHHHHHHHHHHHHhhcccCChh
Q 000914 1053 NW--DGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRR-LMVNLPDAPNREKIIRVILAKEELASDV 1116 (1226)
Q Consensus 1053 ~l--dgl~~k~~~~VlVIaTTN~p~-------------~Ld~aLlrRF~~~-I~l~lPd~eeR~eILk~lL~k~~l~~dv 1116 (1226)
.+ .|+...-+.+.-||||+|+.. .+...+++||+.. |.++-|+...-..|-++++..+...++
T Consensus 472 SIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~- 550 (764)
T KOG0480|consen 472 SIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDD- 550 (764)
T ss_pred hheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccc-
Confidence 33 344444567788999999752 5778999999864 455889988888888888876432221
Q ss_pred cHHHHHHHcCCCcHHHHHHHHHHHH
Q 000914 1117 DLEGIANMADGYSGSDLKNLCVTAA 1141 (1226)
Q Consensus 1117 dl~~LA~~TeGySgsDL~~L~~~Aa 1141 (1226)
-.....+|+..+++..+..|.
T Consensus 551 ----~~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 551 ----ATERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred ----cccccccccHHHHHHHHHHHH
Confidence 111114677777777776664
No 283
>PRK09183 transposase/IS protein; Provisional
Probab=97.93 E-value=2.3e-05 Score=88.35 Aligned_cols=71 Identities=27% Similarity=0.414 Sum_probs=48.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCeEEEEcccccc
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge-~e~~I~~lF~~A~k~~PsILfIDEID~L 1030 (1226)
..+++|+||+|+|||+||.+|+..+ |..+..+++.++...+... ....+..+|... ...+.+|+|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3579999999999999999998765 7777777776655332110 011233444433 245689999999865
No 284
>PRK06921 hypothetical protein; Provisional
Probab=97.93 E-value=2e-05 Score=89.17 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=44.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccc
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDS 1029 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~ 1029 (1226)
..+++|+|++|+|||+|+.+||+++ +..++.++..++........ ......+. .-....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~--~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLN--RMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHH--HhcCCCEEEEecccc
Confidence 3679999999999999999999886 56777777655443211100 01111111 123468999999954
No 285
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.91 E-value=2.4e-05 Score=88.73 Aligned_cols=139 Identities=22% Similarity=0.339 Sum_probs=79.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-Cc--EEEEecCccccccccchHHHHHHHHHHH----H-------hcCCeEEEEc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA----S-------KIAPSVVFVD 1025 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg-~~--fi~v~~s~L~s~~~Ge~e~~I~~lF~~A----~-------k~~PsILfID 1025 (1226)
+++||+||+|||||++++.+...+. .. ...++++... ....++.+.+.. + ..+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 5799999999999999999877663 22 3344443311 112222222111 0 1123599999
Q ss_pred cccccccCCCCCchHHHHHHHHHhhhhhccCCcc------cCCCcEEEEEecCCC---CCCcHHHHhhccccccCCCCCH
Q 000914 1026 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDA 1096 (1226)
Q Consensus 1026 EID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~------k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~l~lPd~ 1096 (1226)
|+..-. .+.-+.+.. .+++.+++.. .|... ..=.++.+||++++. ..+++.++|.| .++.++.|+.
T Consensus 108 DlN~p~--~d~ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMPQ--PDKYGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCCC--CCCCCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 998542 222233322 2444444432 12111 122468889998764 35888999999 6899999999
Q ss_pred HHHHHHHHHHHhh
Q 000914 1097 PNREKIIRVILAK 1109 (1226)
Q Consensus 1097 eeR~eILk~lL~k 1109 (1226)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988865
No 286
>PF05729 NACHT: NACHT domain
Probab=97.88 E-value=8.1e-05 Score=76.07 Aligned_cols=140 Identities=16% Similarity=0.257 Sum_probs=74.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------Cc-EEEEecCcccccc------------ccchHHHHHH-HHHHHHhcC
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAG--------AN-FINISMSSITSKW------------FGEGEKYVKA-VFSLASKIA 1018 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg--------~~-fi~v~~s~L~s~~------------~Ge~e~~I~~-lF~~A~k~~ 1018 (1226)
-++|+|+||+|||++++.++..+. .. ++.+.+.++.... .......+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999998771 12 2233333322110 0001111111 222334455
Q ss_pred CeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhcc--ccccCCCCCH
Q 000914 1019 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP--RRLMVNLPDA 1096 (1226)
Q Consensus 1019 PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~--~~I~l~lPd~ 1096 (1226)
..+|+||.+|.+...... ........++..++.. .. ..++.+|.|+.+ ..... +.+++. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~~--~~----~~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLPQ--AL----PPGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhhh--cc----CCCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCH
Confidence 679999999998532211 0111222233333322 01 123444444432 22222 444333 3478888899
Q ss_pred HHHHHHHHHHHhh
Q 000914 1097 PNREKIIRVILAK 1109 (1226)
Q Consensus 1097 eeR~eILk~lL~k 1109 (1226)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998764
No 287
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.86 E-value=6.5e-05 Score=76.15 Aligned_cols=71 Identities=23% Similarity=0.419 Sum_probs=48.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----------------------cc--cchHHHHHHHHHHH
Q 000914 962 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WF--GEGEKYVKAVFSLA 1014 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~----------------------~~--Ge~e~~I~~lF~~A 1014 (1226)
++|+||||+|||+++..++..+ +.+++.++....... .. .........++..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 566766665432210 00 01111222345566
Q ss_pred HhcCCeEEEEcccccccc
Q 000914 1015 SKIAPSVVFVDEVDSMLG 1032 (1226)
Q Consensus 1015 ~k~~PsILfIDEID~L~~ 1032 (1226)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 677889999999998863
No 288
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.85 E-value=2.8e-05 Score=86.60 Aligned_cols=132 Identities=24% Similarity=0.383 Sum_probs=84.0
Q ss_pred ceEEEEcCCCChHHHHHHHHH------HHhCCcEEEEecCccccc-----cccchHHHHHHHHHHHHh--------cCCe
Q 000914 960 KGILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSK-----WFGEGEKYVKAVFSLASK--------IAPS 1020 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA------~elg~~fi~v~~s~L~s~-----~~Ge~e~~I~~lF~~A~k--------~~Ps 1020 (1226)
..+||.||.|.||++||+.|. +++..+|+++||+.+.++ .+| .++..|.-|+. ...+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg----hvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG----HVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh----hhccccccchhhhhhhhccCCCc
Confidence 359999999999999999984 445789999999988654 222 34444544432 2358
Q ss_pred EEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC-------CCCCcHHHHhhccccccCCC
Q 000914 1021 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------PFDLDEAVVRRLPRRLMVNL 1093 (1226)
Q Consensus 1021 ILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~-------p~~Ld~aLlrRF~~~I~l~l 1093 (1226)
+||+|||..| ...++.++.+.+.+-....-|-...-...+-+|+-|-+ ....-+.+.-|+ ..+.|.+
T Consensus 285 mlfldeigel-----gadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~l 358 (531)
T COG4650 285 MLFLDEIGEL-----GADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTL 358 (531)
T ss_pred eEehHhhhhc-----CccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeec
Confidence 9999999988 33455566555554433222222222345666666633 123334455566 4678888
Q ss_pred CCHHHHHH
Q 000914 1094 PDAPNREK 1101 (1226)
Q Consensus 1094 Pd~eeR~e 1101 (1226)
|...+|.+
T Consensus 359 pgl~qr~e 366 (531)
T COG4650 359 PGLRQRQE 366 (531)
T ss_pred cccccCcc
Confidence 98888765
No 289
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.83 E-value=0.00011 Score=81.62 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=77.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1039 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1039 (1226)
.+-.++||.|||||.+++++|+.+|.+++.++|.+.++ ...+.++|.-+... .+.+.+||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-----hHHH
Confidence 46789999999999999999999999999999987443 34667777666553 489999999988 2111
Q ss_pred HHHHHHHHHhhhhhcc---------CCcccCCCcEEEEEecCC----CCCCcHHHHhhccccccCCCCCHHHHHHHHHHH
Q 000914 1040 HEAMRKMKNEFMVNWD---------GLRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1106 (1226)
Q Consensus 1040 ~e~l~~vl~~Ll~~ld---------gl~~k~~~~VlVIaTTN~----p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~l 1106 (1226)
-......+..+...+. +....-+..+-+..|.|+ ...|++.++.-| +.+.+..||..... +.+
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~---ei~ 176 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIA---EIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHH---HHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHH---HHH
Confidence 1122222222222211 111111233455556664 357888888777 78889999977544 444
Q ss_pred Hhhccc
Q 000914 1107 LAKEEL 1112 (1226)
Q Consensus 1107 L~k~~l 1112 (1226)
+-..++
T Consensus 177 L~s~GF 182 (231)
T PF12774_consen 177 LLSQGF 182 (231)
T ss_dssp HHCCCT
T ss_pred HHHcCc
Confidence 444333
No 290
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=97.80 E-value=8.4e-05 Score=79.10 Aligned_cols=82 Identities=27% Similarity=0.388 Sum_probs=66.8
Q ss_pred ceeEecceEEEeccCccceEecCCCCCccceEEEEeecCCcceEEEEEec-CcceEEECCeecCCCceEEeeCCCEEEEc
Q 000914 146 HLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (1226)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd~~~~d~~~s~~~c~l~~~~~~g~~~a~le~~~-~~G~v~vNg~~~~k~~~~~L~~gdei~f~ 224 (1226)
-+.+....+|+||+..+++.|+|..+|..||.|+..+.. .+|||.+ +||| ||||.++.. .+.|+.||.|.|+
T Consensus 83 ~~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt-~vn~~~v~~--~~~l~~gd~i~i~ 155 (191)
T COG1716 83 VIVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGT-YVNGEKVRQ--RVLLQDGDVIRLG 155 (191)
T ss_pred ccccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcce-EECCeEccC--cEEcCCCCEEEEC
Confidence 344445699999999999999999999999999987544 6667765 6799 799999997 6999999999998
Q ss_pred cCCCeeEEeeec
Q 000914 225 PSGKHSYIFQQL 236 (1226)
Q Consensus 225 ~~~~~ayifq~l 236 (1226)
.... +++.-+
T Consensus 156 ~~~~--~~~~~~ 165 (191)
T COG1716 156 GTLA--ERLRII 165 (191)
T ss_pred ccce--eeEeec
Confidence 7754 344433
No 291
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00028 Score=80.59 Aligned_cols=121 Identities=13% Similarity=0.100 Sum_probs=77.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE--------EEecCcccccc-cc----chHHHHHHHHHHHHhc----CC
Q 000914 957 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSITSKW-FG----EGEKYVKAVFSLASKI----AP 1019 (1226)
Q Consensus 957 kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi--------~v~~s~L~s~~-~G----e~e~~I~~lF~~A~k~----~P 1019 (1226)
+-+..+||+||.|+||+.+|.++|+.+-+.-. .-..+++.--. .+ -.-..++.+...+... .-
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 34578999999999999999999998844210 00011211000 00 1233455555554432 23
Q ss_pred eEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCC
Q 000914 1020 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1094 (1226)
Q Consensus 1020 sILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lP 1094 (1226)
-|++||++|.|. ....+.|+..++. ++.++++|..|+.++.|.+.+++|+ ..+.|+.+
T Consensus 97 kv~ii~~ad~mt------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 599999999982 2234555555544 3467888999999999999999998 56666554
No 292
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.71 E-value=0.00028 Score=79.50 Aligned_cols=157 Identities=16% Similarity=0.093 Sum_probs=83.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hCCcE---EEEecCcc----------ccc---c------ccchHHHHHHHHHH
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATE--AGANF---INISMSSI----------TSK---W------FGEGEKYVKAVFSL 1013 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~e--lg~~f---i~v~~s~L----------~s~---~------~Ge~e~~I~~lF~~ 1013 (1226)
..+-|.|+|++|+|||+||+.+++. ....| +.++...- ... . ....+.....+. .
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~ 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLR-E 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHH-H
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccch-h
Confidence 4467999999999999999999987 32221 22332210 000 0 011222333333 3
Q ss_pred HHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCC
Q 000914 1014 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1093 (1226)
Q Consensus 1014 A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 1093 (1226)
.-...+.+|+||+++... .+..+...+.. ...+..||.||..... ...+... ...+.++.
T Consensus 97 ~L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v-~~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSV-AGSLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGG-GTTHHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc--------------ccccccccccc----cccccccccccccccc-ccccccc-cccccccc
Confidence 334458999999997541 11222211111 1124566777765432 2111111 35688999
Q ss_pred CCHHHHHHHHHHHHhhcc----cCChhcHHHHHHHcCCCcHHHHHHH
Q 000914 1094 PDAPNREKIIRVILAKEE----LASDVDLEGIANMADGYSGSDLKNL 1136 (1226)
Q Consensus 1094 Pd~eeR~eILk~lL~k~~----l~~dvdl~~LA~~TeGySgsDL~~L 1136 (1226)
.+.++-.++|........ ...+.....|++.+.|+ +-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 999999999999876543 11233467888888764 5555444
No 293
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0015 Score=74.83 Aligned_cols=154 Identities=14% Similarity=0.117 Sum_probs=88.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------E---------EecCcccccc-cc--chHHHHHHHHHHHHhc
Q 000914 957 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------N---------ISMSSITSKW-FG--EGEKYVKAVFSLASKI 1017 (1226)
Q Consensus 957 kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi-------~---------v~~s~L~s~~-~G--e~e~~I~~lF~~A~k~ 1017 (1226)
+.+..+||+|| .||+.+|+++|..+-+.-- . -+.+++.--. .| -.-..++.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34578999996 6899999999988733110 0 0011211000 01 1134566655554432
Q ss_pred ----CCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCC
Q 000914 1018 ----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1093 (1226)
Q Consensus 1018 ----~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 1093 (1226)
...|++||++|.|. ....|.|+..++. ++.++++|.+|+.++.|.+.+++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 23699999999982 2234556666554 3456888888988999999999999 6777755
Q ss_pred CCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHH
Q 000914 1094 PDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLC 1137 (1226)
Q Consensus 1094 Pd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgsDL~~L~ 1137 (1226)
+.+...+ ++.+.++..+ ....++. ..| +++....+.
T Consensus 163 -~~~~~~~----~L~~~g~~~~-~a~~la~-~~~-s~~~A~~l~ 198 (290)
T PRK07276 163 -NEAYLIQ----LLEQKGLLKT-QAELLAK-LAQ-STSEAEKLA 198 (290)
T ss_pred -cHHHHHH----HHHHcCCChH-HHHHHHH-HCC-CHHHHHHHh
Confidence 4333333 3334443322 2233443 334 455544454
No 294
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.62 E-value=6.8e-05 Score=90.48 Aligned_cols=171 Identities=23% Similarity=0.300 Sum_probs=94.4
Q ss_pred hhHHHHHhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000914 902 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 981 (1226)
Q Consensus 902 ~~e~~~~ll~~vIp~~e~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~ 981 (1226)
...+..++++++.| .|.|.+++|..+.-.+.--..+- -...--.+.--+|||+|.|||||+.+.+.+++
T Consensus 436 d~~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~kn--~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK 504 (854)
T KOG0477|consen 436 DPPIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPKN--PGGKHKVRGDINVLLLGDPGTAKSQFLKYAEK 504 (854)
T ss_pred CccHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCccC--CCCCceeccceeEEEecCCCccHHHHHHHHHh
Confidence 34455556666666 57899999988865553211110 00000012223599999999999999999998
Q ss_pred HhCCcEEE---------EecCccccccccchHHHHH-HHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 982 EAGANFIN---------ISMSSITSKWFGEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 982 elg~~fi~---------v~~s~L~s~~~Ge~e~~I~-~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
-....++. +.+.-... .-..|+.+. +++.+|.+ +|.+|||+|.+-.+... ..++++.+ +.+-
T Consensus 505 ~s~RAV~tTGqGASavGLTa~v~Kd--PvtrEWTLEaGALVLADk---GvClIDEFDKMndqDRt-SIHEAMEQ--QSIS 576 (854)
T KOG0477|consen 505 TSPRAVFTTGQGASAVGLTAYVRKD--PVTREWTLEAGALVLADK---GVCLIDEFDKMNDQDRT-SIHEAMEQ--QSIS 576 (854)
T ss_pred cCcceeEeccCCccccceeEEEeeC--CccceeeeccCeEEEccC---ceEEeehhhhhcccccc-hHHHHHHh--cchh
Confidence 77443332 22211000 001111111 23445555 89999999999433221 23333321 1111
Q ss_pred hhccCCcccCCCcEEEEEecCCC-----------C--CCcHHHHhhccccccC
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRP-----------F--DLDEAVVRRLPRRLMV 1091 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p-----------~--~Ld~aLlrRF~~~I~l 1091 (1226)
..-.|+...-+.+..||||+|+. + .|.+.+++||+....+
T Consensus 577 ISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 577 ISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred hhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 11123333345678999999872 1 5667899999854444
No 295
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.002 Score=74.21 Aligned_cols=125 Identities=10% Similarity=0.066 Sum_probs=81.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEecCccccccccchHHHHHHHHHHHHh-----cCCe
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPS 1020 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~elg~-------------~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k-----~~Ps 1020 (1226)
.+.+||+|+.|.||+.+|+++++.+-+ .++.++.. +..+ .-..++.+...+.. ...-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCce
Confidence 357899999999999999999988722 12223200 1111 12234444443322 2446
Q ss_pred EEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHH
Q 000914 1021 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 1100 (1226)
Q Consensus 1021 ILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~ 1100 (1226)
|++||++|.+. ....+.|+..++. .+..+++|.+|+.+..|-+++++|+ .++.+..|+.++..
T Consensus 93 vvII~~~e~m~------------~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTS------------NSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccC------------HHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 99999999872 1233455555554 3355777777778899999999998 68999999887766
Q ss_pred HHHHH
Q 000914 1101 KIIRV 1105 (1226)
Q Consensus 1101 eILk~ 1105 (1226)
..+..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 65543
No 296
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.57 E-value=0.0026 Score=76.82 Aligned_cols=197 Identities=16% Similarity=0.202 Sum_probs=101.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ 994 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~------ 994 (1226)
.+.+++.-...-+.++++.+.. -..|.. + -+.+-+||+||+|||||+.++.|++++|..++....+.
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~----~~~~~~-~--l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQ----VAEFTP-K--LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHH----HHHhcc-C--CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 4556666555555555555441 111111 1 12234899999999999999999999999998866322
Q ss_pred -cccccccch------HHHHHHHHHHHHh------------cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhcc
Q 000914 995 -ITSKWFGEG------EKYVKAVFSLASK------------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1055 (1226)
Q Consensus 995 -L~s~~~Ge~------e~~I~~lF~~A~k------------~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ld 1055 (1226)
+.....+-. -..+......+.+ ..+.+|+|||+=..+... ..+..+.++..+. ..
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~-s~- 225 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLYV-SI- 225 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHHHH-hc-
Confidence 111111111 1111222233322 235699999997664321 2334444554222 11
Q ss_pred CCcccCCCcEEEEEec-CCCCCCcHHHHh--------hccccccCCCCCHHHHHHHHHHHHhhcccC-------ChhcHH
Q 000914 1056 GLRTKDKERVLVLAAT-NRPFDLDEAVVR--------RLPRRLMVNLPDAPNREKIIRVILAKEELA-------SDVDLE 1119 (1226)
Q Consensus 1056 gl~~k~~~~VlVIaTT-N~p~~Ld~aLlr--------RF~~~I~l~lPd~eeR~eILk~lL~k~~l~-------~dvdl~ 1119 (1226)
..-++++|.|- ..++..++..+. |. .+|.|.+-...-..+.|+.++..+... ....++
T Consensus 226 -----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 226 -----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred -----CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 11233333332 222333322111 44 357777767777777888777764322 234455
Q ss_pred HHHHHcCCCcHHHHHHH
Q 000914 1120 GIANMADGYSGSDLKNL 1136 (1226)
Q Consensus 1120 ~LA~~TeGySgsDL~~L 1136 (1226)
.++....|--...|..|
T Consensus 300 ~i~~~s~GDIRsAInsL 316 (634)
T KOG1970|consen 300 LICQGSGGDIRSAINSL 316 (634)
T ss_pred HHHHhcCccHHHHHhHh
Confidence 66665555444444443
No 297
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.55 E-value=0.00021 Score=92.66 Aligned_cols=138 Identities=25% Similarity=0.323 Sum_probs=88.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc------ccc-cccc--hHH-HHHHHHHHHHhcCCeEEEEccccc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSK-WFGE--GEK-YVKAVFSLASKIAPSVVFVDEVDS 1029 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L------~s~-~~Ge--~e~-~I~~lF~~A~k~~PsILfIDEID~ 1029 (1226)
+++||.|.||+|||.|+.|+|+..|-.+++++.++- ++. ..++ ++- ....-|-.|.+ ...-+++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhhh
Confidence 569999999999999999999999999999998762 221 1121 111 22233444444 347899999963
Q ss_pred cccCCCCCchHHHH---HHHHH----hhhhhccCCcccCCCcEEEEEecCCC------CCCcHHHHhhccccccCCCCCH
Q 000914 1030 MLGRRENPGEHEAM---RKMKN----EFMVNWDGLRTKDKERVLVLAATNRP------FDLDEAVVRRLPRRLMVNLPDA 1096 (1226)
Q Consensus 1030 L~~~r~~~~~~e~l---~~vl~----~Ll~~ldgl~~k~~~~VlVIaTTN~p------~~Ld~aLlrRF~~~I~l~lPd~ 1096 (1226)
- .|..+ +..+. .++-.+|.. -+.+.+++|.||-|+. ..|+..++.|| .++.+...+.
T Consensus 1623 a--------SQSVlEGLNacLDhR~eayIPEld~~-f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~ 1692 (4600)
T COG5271 1623 A--------SQSVLEGLNACLDHRREAYIPELDKT-FDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTT 1692 (4600)
T ss_pred h--------HHHHHHHHHHHHhhccccccccccce-eeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEeccccc
Confidence 2 22222 11111 111112211 1235678999998875 47999999999 5777777776
Q ss_pred HHHHHHHHHHHh
Q 000914 1097 PNREKIIRVILA 1108 (1226)
Q Consensus 1097 eeR~eILk~lL~ 1108 (1226)
++...|...++.
T Consensus 1693 dDi~~Ia~~~yp 1704 (4600)
T COG5271 1693 DDITHIANKMYP 1704 (4600)
T ss_pred chHHHHHHhhCC
Confidence 666666655544
No 298
>CHL00181 cbbX CbbX; Provisional
Probab=97.54 E-value=0.00061 Score=78.08 Aligned_cols=131 Identities=17% Similarity=0.136 Sum_probs=78.1
Q ss_pred CeEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCC
Q 000914 680 PLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 753 (1226)
Q Consensus 680 P~Ilfi~die~~l~~------~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd 753 (1226)
+-||||||++.+... ..+....|...++...++++||++... +. .+.+++
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~-~~------------------~~~~~~----- 178 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYK-DR------------------MDKFYE----- 178 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc-HH------------------HHHHHh-----
Confidence 459999999985321 245555666667766778888888651 00 001111
Q ss_pred CccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhc
Q 000914 754 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCI 833 (1226)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRrw~~qLe~dLpdlk~R~nIl~IhT~L~~n~l~~~dL~~La~ 833 (1226)
....|..+|+..|.++++..+.+...|...+...-..+.. ..+..+...+.+ . .
T Consensus 179 --------------~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~-~~~~~L~~~i~~----------~-~ 232 (287)
T CHL00181 179 --------------SNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTP-EAEKALLDYIKK----------R-M 232 (287)
T ss_pred --------------cCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHH----------h-C
Confidence 1256888999999999999999888777655432111110 011111111111 0 1
Q ss_pred ccCCCC-HHHHHHHHhhhhhcccccccC
Q 000914 834 KDQTLT-TEGVEKIVGWALSHHFMHCSE 860 (1226)
Q Consensus 834 ~tkg~s-gadI~~Lv~~A~s~al~r~~~ 860 (1226)
....|+ +-+++.++..|......|...
T Consensus 233 ~~~~~GNaR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 233 EQPLFANARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 134566 788999998888777766543
No 299
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.00057 Score=71.30 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el 983 (1226)
...|+++|+||+|||+++..|+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3579999999999999999999877
No 300
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.00098 Score=74.99 Aligned_cols=122 Identities=7% Similarity=0.041 Sum_probs=77.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE--------------EEEecCccccccc---cchHHHHHHHHHHHHh--
Q 000914 956 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF--------------INISMSSITSKWF---GEGEKYVKAVFSLASK-- 1016 (1226)
Q Consensus 956 ~kP~~gVLL~GPPGTGKT~LArAIA~elg~~f--------------i~v~~s~L~s~~~---Ge~e~~I~~lF~~A~k-- 1016 (1226)
..++..+||+||.|+||..+|.++|+.+-+.- ..-+.+++.--+. .-....++.+......
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc
Confidence 34668899999999999999999998873221 0000111111000 0112334444333221
Q ss_pred ---cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCC
Q 000914 1017 ---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1093 (1226)
Q Consensus 1017 ---~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 1093 (1226)
..--|++|+++|.|- ....+.|+..++. ++.++++|.+|+.++.+.+.+++|+ ..+.++.
T Consensus 84 ~e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~ 146 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLS 146 (261)
T ss_pred hhcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCC
Confidence 124699999999882 2345666666654 4467899999999999999999998 4566655
Q ss_pred C
Q 000914 1094 P 1094 (1226)
Q Consensus 1094 P 1094 (1226)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 5
No 301
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.50 E-value=0.00035 Score=85.69 Aligned_cols=88 Identities=28% Similarity=0.341 Sum_probs=74.8
Q ss_pred cceEEEeccCccceEecCCCCCccceEEEEeecCC--------cceEEEEEecCc-ceEEECCeecCCCceEEeeCCCEE
Q 000914 151 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGG--------PSGALLEITGGK-GEVEVNGNVHPKDSQVVLRGGDEL 221 (1226)
Q Consensus 151 ~~~~t~G~~~~cd~~~~d~~~s~~~c~l~~~~~~g--------~~~a~le~~~~~-G~v~vNg~~~~k~~~~~L~~gdei 221 (1226)
...|+|||...||+.+-.|+||..||.|.+- +.| ....++.|.|+- || |+|-++|.+.+-+.++-|+.+
T Consensus 176 ~~~~~fgr~~~cD~~~eHpsISr~h~vlQy~-~~~~~~p~~s~~~g~~i~dlgsThgt-~~NK~rvppk~yir~~Vg~v~ 253 (793)
T KOG1881|consen 176 AAACLFGRLGGCDVALEHPSISRFHAVLQYK-ASGPDDPCASNGEGWYIYDLGSTHGT-FLNKDRVPPKVYIRDRVGHVA 253 (793)
T ss_pred ceeEEecccCCCccccccCcccccceeeecc-CCCCCccccCCCCceEEeeccccccc-eeccccCCCcchhhhhHHHHH
Confidence 4789999999999999999999999999865 222 234677766654 99 799999999999999999999
Q ss_pred EEccCCCeeEEeeecCcccC
Q 000914 222 VFSPSGKHSYIFQQLSDDTL 241 (1226)
Q Consensus 222 ~f~~~~~~ayifq~l~~~~~ 241 (1226)
-|+-+.+ .||||....+..
T Consensus 254 ~fggsTr-l~i~Qgp~eD~E 272 (793)
T KOG1881|consen 254 RFGGSTR-LYIFQGPEEDEE 272 (793)
T ss_pred HhcCceE-EEEeeCCCcCCC
Confidence 9998877 899998776653
No 302
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.44 E-value=0.00054 Score=78.42 Aligned_cols=161 Identities=21% Similarity=0.363 Sum_probs=94.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH---HHhCCcEEEEecCcc--c---
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA---TEAGANFINISMSSI--T--- 996 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA---~elg~~fi~v~~s~L--~--- 996 (1226)
.+.|..+..+.+.+++.+-. +..-.+.|+|.||.|+|||+|..... ++.|-+|+.|..... .
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~----------~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTI----------LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHH----------HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 45677777777777665311 12234689999999999999776553 355666655543221 1
Q ss_pred ----------------cccccchHHHHHHHHHHHHhc---C-CeEEE-EccccccccCCCCCchHHHHHHHHHhhhhhcc
Q 000914 997 ----------------SKWFGEGEKYVKAVFSLASKI---A-PSVVF-VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1055 (1226)
Q Consensus 997 ----------------s~~~Ge~e~~I~~lF~~A~k~---~-PsILf-IDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ld 1055 (1226)
...+|.....+..+....+.. . ..||| +||+|...+.. -+++++.+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHH
Confidence 112333333333333333221 1 12555 57999775322 133343333
Q ss_pred CCcccCCCcEEEEEecCCCC---CCcHHHHhhcccc-ccC-CCCCHHHHHHHHHHHH
Q 000914 1056 GLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRR-LMV-NLPDAPNREKIIRVIL 1107 (1226)
Q Consensus 1056 gl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~~-I~l-~lPd~eeR~eILk~lL 1107 (1226)
.+....+.++.||+.|.+.+ .|...+.+||..+ |.+ +.....+-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 33333457899999997765 4556777899875 444 3345777788888777
No 303
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.42 E-value=0.003 Score=70.46 Aligned_cols=174 Identities=20% Similarity=0.225 Sum_probs=103.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCcccc-----cc----ccc--------hHHHHHHHHHHHHh-cCC
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS-----KW----FGE--------GEKYVKAVFSLASK-IAP 1019 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg---~~fi~v~~s~L~s-----~~----~Ge--------~e~~I~~lF~~A~k-~~P 1019 (1226)
-+.++|+-|+|||++.|++..-++ ...+.++...+.. .+ ... .+..-+.+.....+ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 489999999999999997766663 2223444333211 11 111 11222233334333 456
Q ss_pred eEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCC-c---HHHHhhccccccCCCCC
Q 000914 1020 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL-D---EAVVRRLPRRLMVNLPD 1095 (1226)
Q Consensus 1020 sILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L-d---~aLlrRF~~~I~l~lPd 1095 (1226)
-++++||.+.|. ...-+.++.+.+ +. .++ . ..-.+++||-..-...+ . ..+..|+..+|.+++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~n-l~--~~~--~-~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTN-LE--EDS--S-KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHh-hc--ccc--c-CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999883 223333333222 11 111 1 11335555544211111 1 23444887668888889
Q ss_pred HHHHHHHHHHHHhhc----ccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhH
Q 000914 1096 APNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1146 (1226)
Q Consensus 1096 ~eeR~eILk~lL~k~----~l~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~air 1146 (1226)
.++-..++++.++.- .+.++..+..++..+.| .+.-|.++|..|+..+..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 998899999998873 45567778889999999 577888888888765544
No 304
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.41 E-value=0.00047 Score=81.40 Aligned_cols=103 Identities=19% Similarity=0.322 Sum_probs=57.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecCccccccccc------hHHHHHHHHHHHHhcCCeEEEEcccc
Q 000914 956 TKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSITSKWFGE------GEKYVKAVFSLASKIAPSVVFVDEVD 1028 (1226)
Q Consensus 956 ~kP~~gVLL~GPPGTGKT~LArAIA~elg~-~fi~v~~s~L~s~~~Ge------~e~~I~~lF~~A~k~~PsILfIDEID 1028 (1226)
..+++|++|||++|+|||+|+-.+...+.. .-..+.--.++...... ....+..+-.... ..-.||+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 346799999999999999999999887743 11111111111110000 0011111111111 122499999997
Q ss_pred ccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000914 1029 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1074 (1226)
Q Consensus 1029 ~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p 1074 (1226)
.- +.+....+.+++..+.. ..+++|+|+|.+
T Consensus 138 V~-----DiaDAmil~rLf~~l~~----------~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-----DIADAMILKRLFEALFK----------RGVVLVATSNRP 168 (362)
T ss_pred cc-----chhHHHHHHHHHHHHHH----------CCCEEEecCCCC
Confidence 53 33444455556655542 468999999974
No 305
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.35 E-value=0.00067 Score=81.73 Aligned_cols=172 Identities=24% Similarity=0.321 Sum_probs=108.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---------EEEecCcc
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---------INISMSSI 995 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~f---------i~v~~s~L 995 (1226)
.|.|.+.+|+.+.-++.--. ...+..+...+..-+|||.|.|-+-|+.|.|++.+.+...+ +-+.++-.
T Consensus 302 SI~GH~~vKkAillLLlGGv--Ek~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGV--EKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhccc--eeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 57899999998866553211 11122333334445699999999999999999987663221 22222211
Q ss_pred ccccccchHHHHH-HHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhc--cCCcccCCCcEEEEEecC
Q 000914 996 TSKWFGEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATN 1072 (1226)
Q Consensus 996 ~s~~~Ge~e~~I~-~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~l--dgl~~k~~~~VlVIaTTN 1072 (1226)
... ..+|+.+. +...+|.+ +|+.|||+|.+ +.....+...++++-...+ .|+...-+.++-|||++|
T Consensus 380 tD~--eTGERRLEAGAMVLADR---GVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQ--ETGERRLEAGAMVLADR---GVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred ecc--ccchhhhhcCceEEccC---ceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 111 22333332 24445555 89999999998 4455566666776655544 466666788999999999
Q ss_pred CCC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHh
Q 000914 1073 RPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILA 1108 (1226)
Q Consensus 1073 ~p~-------------~Ld~aLlrRF~~~I~l-~lPd~eeR~eILk~lL~ 1108 (1226)
+.+ .|++.+++||+..+.+ +.-+...-..|-.+.++
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 853 5788999999865433 44555544555555544
No 306
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0012 Score=84.55 Aligned_cols=139 Identities=22% Similarity=0.333 Sum_probs=98.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCccc--cccccchHHHHHHHHHHHHhc-CCeEEEEcc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDE 1026 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v~~s~L~--s~~~Ge~e~~I~~lF~~A~k~-~PsILfIDE 1026 (1226)
++-+|.|.||+|||.++.-+|+.. +..++.++...+. .++.|+.+..++.+...+... ...||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 678999999999999999999886 3456677765443 346677888999999988843 457899999
Q ss_pred ccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC-----CCCCcHHHHhhccccccCCCCCHHHHHH
Q 000914 1027 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREK 1101 (1226)
Q Consensus 1027 ID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~-----p~~Ld~aLlrRF~~~I~l~lPd~eeR~e 1101 (1226)
++.+.+...+.+. -...+.|...+ .+..+.+|+||.. ...-+|++-+||+ .+.++.|+.++-..
T Consensus 289 lh~lvg~g~~~~~----~d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYGA----IDAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcchH----HHHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhh
Confidence 9999866554221 12222222221 1234899998753 2356789999994 67789999888777
Q ss_pred HHHHHHhh
Q 000914 1102 IIRVILAK 1109 (1226)
Q Consensus 1102 ILk~lL~k 1109 (1226)
||...-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77776555
No 307
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.31 E-value=0.0005 Score=67.11 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAG 984 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg 984 (1226)
|.|+||||+|||+||+.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 308
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.29 E-value=0.0024 Score=71.97 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.7
Q ss_pred cccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhh
Q 000914 483 KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 518 (1226)
Q Consensus 483 ~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f 518 (1226)
+.+....+....|||+|||| +++++|||++|+++
T Consensus 33 ~~g~~~~~~~~~vll~GppG--tGKTtlA~~ia~~l 66 (261)
T TIGR02881 33 EEGLKTSKQVLHMIFKGNPG--TGKTTVARILGKLF 66 (261)
T ss_pred HcCCCCCCCcceEEEEcCCC--CCHHHHHHHHHHHH
Confidence 34555566678899999999 99999999999987
No 309
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.25 E-value=0.0052 Score=69.83 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=73.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--CcEEEE-----ecCc
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--ANFINI-----SMSS 994 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g--~~fi~v-----~~s~ 994 (1226)
.+.|+.-+++.+...+...+..+ . .+.|--+=|+|++||||.++++.||+.+ | .+++.. +++.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~------~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANP------N-PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCC------C-CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 36778777777777665433322 1 2233457789999999999999999887 2 233221 1111
Q ss_pred --cccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecC
Q 000914 995 --ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1072 (1226)
Q Consensus 995 --L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN 1072 (1226)
-...| .++....+-.-+...+.+|.++||+|.| .++ +..++.-|+.........+..+.++|.-+|
T Consensus 156 ~~~ie~Y---k~eL~~~v~~~v~~C~rslFIFDE~DKm-----p~g----Lld~lkpfLdyyp~v~gv~frkaIFIfLSN 223 (344)
T KOG2170|consen 156 ASKIEDY---KEELKNRVRGTVQACQRSLFIFDEVDKL-----PPG----LLDVLKPFLDYYPQVSGVDFRKAIFIFLSN 223 (344)
T ss_pred hHHHHHH---HHHHHHHHHHHHHhcCCceEEechhhhc-----CHh----HHHHHhhhhccccccccccccceEEEEEcC
Confidence 01111 1223334445556677799999999998 222 222223333221122212345667777776
Q ss_pred CC
Q 000914 1073 RP 1074 (1226)
Q Consensus 1073 ~p 1074 (1226)
.-
T Consensus 224 ~g 225 (344)
T KOG2170|consen 224 AG 225 (344)
T ss_pred Cc
Confidence 53
No 310
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.25 E-value=0.003 Score=85.19 Aligned_cols=171 Identities=16% Similarity=0.253 Sum_probs=93.8
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---EEEecCccc--
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---INISMSSIT-- 996 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~f---i~v~~s~L~-- 996 (1226)
.+++++|++..+++|...+.. . ....+-|-|+|++|+|||+||+++++.+...| +.++...+.
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l--~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHL--E----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred ccccccchHHHHHHHHHHHcc--c----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 467899999999999887752 1 11235689999999999999999988874332 112110000
Q ss_pred ccccc-----c-------hHHHHHH-------------HHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhh
Q 000914 997 SKWFG-----E-------GEKYVKA-------------VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1051 (1226)
Q Consensus 997 s~~~G-----e-------~e~~I~~-------------lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll 1051 (1226)
....+ . ....+.. .....-..++.+|+||+++.. ..++.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L~ 315 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDALA 315 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHHH
Confidence 00000 0 0000111 111222345679999998643 1222222
Q ss_pred hhccCCcccCCCcEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhc----HHHHHHHc
Q 000914 1052 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVD----LEGIANMA 1125 (1226)
Q Consensus 1052 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvd----l~~LA~~T 1125 (1226)
...+.. ...-.||.||... .+++ ..++++.+..|+.++..++|..+.-+..... .+ ...++..+
T Consensus 316 ~~~~~~----~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~c 385 (1153)
T PLN03210 316 GQTQWF----GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALRA 385 (1153)
T ss_pred hhCccC----CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHh
Confidence 222211 1223456666643 3333 3456788999999999998887764432222 12 23455666
Q ss_pred CCC
Q 000914 1126 DGY 1128 (1226)
Q Consensus 1126 eGy 1128 (1226)
.|.
T Consensus 386 ~GL 388 (1153)
T PLN03210 386 GNL 388 (1153)
T ss_pred CCC
Confidence 654
No 311
>PF14516 AAA_35: AAA-like domain
Probab=97.24 E-value=0.0043 Score=72.51 Aligned_cols=164 Identities=14% Similarity=0.146 Sum_probs=87.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-------------------------------
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG------------------------------- 1003 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~Ge~------------------------------- 1003 (1226)
|..-+.|+||..+|||+|...+.+.+ |...+.+++..+....+...
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 44679999999999999999987666 77888888765432111111
Q ss_pred HHHHHHHHHH---HHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHH
Q 000914 1004 EKYVKAVFSL---ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 1080 (1226)
Q Consensus 1004 e~~I~~lF~~---A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~a 1080 (1226)
.......|+. ..-..|-||+|||||.++....- ..+. ..++..+...-. ......++.+|.+......+...
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~--~~dF-~~~LR~~~~~~~--~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQI--ADDF-FGLLRSWYEQRK--NNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcch--HHHH-HHHHHHHHHhcc--cCcccceEEEEEecCcccccccC
Confidence 1112223332 12246789999999999743210 1111 112222221111 11112334444333222112111
Q ss_pred H-Hh--hccccccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCc
Q 000914 1081 V-VR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 1129 (1226)
Q Consensus 1081 L-lr--RF~~~I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGyS 1129 (1226)
. .+ .+...+.++..+.++-..+++.+-.. .....++.|-..|.|..
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FSQEQLEQLMDWTGGHP 233 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CCHHHHHHHHHHHCCCH
Confidence 1 11 22345667777888888887776322 23344888999998864
No 312
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.23 E-value=0.0016 Score=68.72 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=46.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc-----------------------chH-----
Q 000914 962 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG-----------------------EGE----- 1004 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~~G-----------------------e~e----- 1004 (1226)
+||+||||||||+|+..++.+. |.+++.++..+-... .+| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999987664 666666665321100 000 000
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccccccc
Q 000914 1005 KYVKAVFSLASKIAPSVVFVDEVDSMLG 1032 (1226)
Q Consensus 1005 ~~I~~lF~~A~k~~PsILfIDEID~L~~ 1032 (1226)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1124445555667899999999988753
No 313
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.22 E-value=0.0013 Score=71.24 Aligned_cols=74 Identities=23% Similarity=0.419 Sum_probs=49.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccc-----------------------cchHHHHHHHHH
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF-----------------------GEGEKYVKAVFS 1012 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~~-----------------------Ge~e~~I~~lF~ 1012 (1226)
..-++|+||||+|||+++..++... +...+.++...+....+ .+....+..+..
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 91 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSK 91 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHH
Confidence 3558999999999999999988654 66788888754111000 011122444445
Q ss_pred HHHhcCCeEEEEcccccccc
Q 000914 1013 LASKIAPSVVFVDEVDSMLG 1032 (1226)
Q Consensus 1013 ~A~k~~PsILfIDEID~L~~ 1032 (1226)
.+.+..+.+|+||-|..++.
T Consensus 92 ~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 92 FIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHhhcCccEEEEeCcHHHhH
Confidence 55566789999999998863
No 314
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.20 E-value=0.00085 Score=74.01 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=42.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc--cccc--------cccchHHHHHHHHHHHHh--cCCeEE
Q 000914 955 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK--------WFGEGEKYVKAVFSLASK--IAPSVV 1022 (1226)
Q Consensus 955 l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~--L~s~--------~~Ge~e~~I~~lF~~A~k--~~PsIL 1022 (1226)
+.+.+..+||||+||+|||++|+.++. ..-++..+... +.+. .....-..+...+..+.. ....+|
T Consensus 8 ~~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtV 85 (220)
T TIGR01618 8 IKRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNI 85 (220)
T ss_pred cCCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEE
Confidence 344446799999999999999999962 22333333321 1100 001111223333333322 335799
Q ss_pred EEcccccccc
Q 000914 1023 FVDEVDSMLG 1032 (1226)
Q Consensus 1023 fIDEID~L~~ 1032 (1226)
+||+|+.|..
T Consensus 86 VIDsI~~l~~ 95 (220)
T TIGR01618 86 VIDNISALQN 95 (220)
T ss_pred EEecHHHHHH
Confidence 9999998753
No 315
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.17 E-value=0.00094 Score=79.51 Aligned_cols=173 Identities=23% Similarity=0.310 Sum_probs=95.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe----cCccccccc
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS----MSSITSKWF 1000 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~----~s~L~s~~~ 1000 (1226)
.|.|.+++|+.+.-++.- .....+-.+--.+..-+|||.|.|||.|+.|.+-+-+-.-.-++.-- ++.|.....
T Consensus 332 SIfG~~DiKkAiaClLFg--GsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFG--GSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhhc--CccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 578999999998665532 11111111111223346999999999999999988665533222110 001111000
Q ss_pred cch---HHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHH--hhhhhccCCcccCCCcEEEEEecCCC
Q 000914 1001 GEG---EKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN--EFMVNWDGLRTKDKERVLVLAATNRP 1074 (1226)
Q Consensus 1001 Ge~---e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~--~Ll~~ldgl~~k~~~~VlVIaTTN~p 1074 (1226)
... +-++ .+...+|.. +|+.|||+|.+- ..+..+..+.++ +.-..-.|+.+.-+.+.-|+|++|++
T Consensus 410 RD~~tReFylEGGAMVLADg---GVvCIDEFDKMr-----e~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpv 481 (729)
T KOG0481|consen 410 RDPSTREFYLEGGAMVLADG---GVVCIDEFDKMR-----EDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPV 481 (729)
T ss_pred ecCCcceEEEecceEEEecC---CEEEeehhhccC-----chhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCc
Confidence 000 0000 011223333 899999999982 223333333333 33334457777677889999999975
Q ss_pred C-------------CCcHHHHhhccccccCCCCCHHHH-HHHHHHHH
Q 000914 1075 F-------------DLDEAVVRRLPRRLMVNLPDAPNR-EKIIRVIL 1107 (1226)
Q Consensus 1075 ~-------------~Ld~aLlrRF~~~I~l~lPd~eeR-~eILk~lL 1107 (1226)
. ++-+.+++||+.++.+.--..++| ..|.++.+
T Consensus 482 fGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 482 FGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred cccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 2 344899999998887765433333 44444443
No 316
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.16 E-value=0.00064 Score=87.51 Aligned_cols=161 Identities=24% Similarity=0.296 Sum_probs=102.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccccc-----c--hHHHHHHHHH---H--HHhcCCeEEEEccccc
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG-----E--GEKYVKAVFS---L--ASKIAPSVVFVDEVDS 1029 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~G-----e--~e~~I~~lF~---~--A~k~~PsILfIDEID~ 1029 (1226)
+|++||||+|||+.+.++|.++|+.++..|.++..+.... . ....+...|. . .....-.||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 6999999999999999999999999999999876554321 1 1122333330 0 0111124999999999
Q ss_pred cccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 000914 1030 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1109 (1226)
Q Consensus 1030 L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~eILk~lL~k 1109 (1226)
+++ ... + .+..+..... ...+-+|+++|.........+.|....++|..|+...+..-+..++..
T Consensus 440 ~~~-~dR-g-------~v~~l~~l~~------ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-EDR-G-------GVSKLSSLCK------KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-hhh-h-------hHHHHHHHHH------hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 865 111 1 2222222211 123456777777665555444554455999999999988888877776
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 000914 1110 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1141 (1226)
Q Consensus 1110 ~~l~-~dvdl~~LA~~TeGySgsDL~~L~~~Aa 1141 (1226)
+.+. .+..++.+.+.+ ++||++.+..-.
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 5433 555677777766 556666655443
No 317
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.15 E-value=0.00049 Score=80.56 Aligned_cols=76 Identities=29% Similarity=0.448 Sum_probs=64.7
Q ss_pred EecceEEEeccCccceEecCCCC--CccceEEEEeecCCcceEEEEEecCcceEEECCeecCCCce-EEeeCCCEEEEcc
Q 000914 149 MTGAVFTVGHNRQCDLYLKDPSI--SKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ-VVLRGGDELVFSP 225 (1226)
Q Consensus 149 i~~~~~t~G~~~~cd~~~~d~~~--s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~~-~~L~~gdei~f~~ 225 (1226)
......+|||+..||-.+.|+.- |.-||+|... +|. .+|=|+|+||+ +|||..+.-|.- +.|+.||||-++
T Consensus 23 f~~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~--dg~--f~L~DtS~g~l-~VNgs~~~~g~~~~RLqqGd~i~iG- 96 (430)
T COG3456 23 FDRGGGVIGRSPDCDWQIDDPERFVSKQHCTISYR--DGG--FCLTDTSNGGL-LVNGSDLPLGEGSARLQQGDEILIG- 96 (430)
T ss_pred hhcCCcccccCCCCCccccCcccccchhheEEEec--CCe--EEEEecCCCce-eecccccCCCCCccccccCCEEeec-
Confidence 34567899999999999999865 9999999875 454 88999998888 799999998888 999999999874
Q ss_pred CCCeeEEee
Q 000914 226 SGKHSYIFQ 234 (1226)
Q Consensus 226 ~~~~ayifq 234 (1226)
-|||.
T Consensus 97 ----~y~i~ 101 (430)
T COG3456 97 ----RYIIR 101 (430)
T ss_pred ----cEEEE
Confidence 36766
No 318
>PHA02624 large T antigen; Provisional
Probab=97.12 E-value=0.00048 Score=84.71 Aligned_cols=118 Identities=21% Similarity=0.275 Sum_probs=66.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCC--CCC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENP 1037 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r--~~~ 1037 (1226)
+.+||+||||||||+|+.+|++.++...+.++++.-.+. |.+.--...-+.+||++-.-.-.. -.+
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 569999999999999999999999777788886652221 111111112578888874221100 000
Q ss_pred chHHHHHHHHHhhhhhccCC-c----ccCCCc-----EEEEEecCCCCCCcHHHHhhccccccCCC
Q 000914 1038 GEHEAMRKMKNEFMVNWDGL-R----TKDKER-----VLVLAATNRPFDLDEAVVRRLPRRLMVNL 1093 (1226)
Q Consensus 1038 ~~~e~l~~vl~~Ll~~ldgl-~----~k~~~~-----VlVIaTTN~p~~Ld~aLlrRF~~~I~l~l 1093 (1226)
+ +- +. =+..|...+||- . .+...+ --+|.|||. ..++..+.-||..++.|..
T Consensus 500 G-~~-~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 G-QG-MN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred c-cc-cc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 0 00 00 012233344443 1 011111 134557775 6788888889988888853
No 319
>PHA00729 NTP-binding motif containing protein
Probab=97.12 E-value=0.00096 Score=73.73 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANF 987 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~f 987 (1226)
..|+|+|+||||||+||.+|++.++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 4799999999999999999999986433
No 320
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.09 E-value=0.032 Score=67.70 Aligned_cols=200 Identities=18% Similarity=0.224 Sum_probs=100.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---------------ccc-----chHHHHHHHHHHH
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---------------WFG-----EGEKYVKAVFSLA 1014 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~---------------~~G-----e~e~~I~~lF~~A 1014 (1226)
+|..++|+|++|+|||+++..+|..+ |..+..+++..+... .++ .....+...+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45779999999999999999999877 556665655432110 111 1112233444444
Q ss_pred HhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhcccc-----c
Q 000914 1015 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR-----L 1089 (1226)
Q Consensus 1015 ~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~-----I 1089 (1226)
... .+|+||...++. .. ..++.++.....-.. ....++|+-++...+.++ ..++|... +
T Consensus 174 ~~~--DvVIIDTAGr~~------~d----~~lm~El~~l~~~~~--pdevlLVvda~~gq~av~--~a~~F~~~l~i~gv 237 (437)
T PRK00771 174 KKA--DVIIVDTAGRHA------LE----EDLIEEMKEIKEAVK--PDEVLLVIDATIGQQAKN--QAKAFHEAVGIGGI 237 (437)
T ss_pred hcC--CEEEEECCCccc------ch----HHHHHHHHHHHHHhc--ccceeEEEeccccHHHHH--HHHHHHhcCCCCEE
Confidence 433 799999986651 11 122333322222111 123455555554333332 22344322 2
Q ss_pred cCCCCCHHHHHH-HHHHHHhh----------ccc--CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000914 1090 MVNLPDAPNREK-IIRVILAK----------EEL--ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1156 (1226)
Q Consensus 1090 ~l~lPd~eeR~e-ILk~lL~k----------~~l--~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ek 1156 (1226)
.+.-.|...|.- +|...... ..+ ....+.+.++...-| -+|+..|++.|.... .+- +.++...
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg--mgd~~~l~e~~~~~~-~~~-~~~~~~~ 313 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG--MGDLESLLEKVEEAL-DEE-EEEKDVE 313 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC--CCChHHHHHHHHHhh-hHH-HHHHHHH
Confidence 334445444432 33322221 111 123456677776644 368888888776431 110 0001011
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 000914 1157 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1192 (1226)
Q Consensus 1157 ~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~p 1192 (1226)
... .-..+++||..-+++++.
T Consensus 314 --~~~-------------~~~f~l~d~~~q~~~~~k 334 (437)
T PRK00771 314 --KMM-------------KGKFTLKDMYKQLEAMNK 334 (437)
T ss_pred --HHH-------------cCCcCHHHHHHHHHHHHh
Confidence 110 124789999998877653
No 321
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.09 E-value=0.00047 Score=67.69 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAGANFINISM 992 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg~~fi~v~~ 992 (1226)
|+|.|+||+||||+|+.||+.++++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876663
No 322
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.04 E-value=0.0011 Score=71.50 Aligned_cols=121 Identities=15% Similarity=0.205 Sum_probs=56.3
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEecCccccccccc----hHH-------------HHHHHHHHHHhcCCe
Q 000914 962 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWFGE----GEK-------------YVKAVFSLASKIAPS 1020 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAI-A~el---g~~fi~v~~s~L~s~~~Ge----~e~-------------~I~~lF~~A~k~~Ps 1020 (1226)
.|++|.||+|||+.|-.. .... |.+++. +...|.-..+.. .-. .......-...-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999987655 4443 555544 433221111111 000 001111111111468
Q ss_pred EEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCC
Q 000914 1021 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 1092 (1226)
Q Consensus 1021 ILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~ 1092 (1226)
+|+|||++.+++.+..... .....++ ++... ....+-||.+|-.+..++..+++..+..+++.
T Consensus 82 liviDEa~~~~~~r~~~~~--~~~~~~~-~l~~h------Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK--KVPEIIE-FLAQH------RHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHHH-GGGGC------CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCccccc--cchHHHH-HHHHh------CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 9999999999987755211 1122332 22222 23557888889999999999988666555544
No 323
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.04 E-value=0.00036 Score=73.86 Aligned_cols=23 Identities=52% Similarity=0.808 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000914 961 GILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~el 983 (1226)
+|+|+|+||+|||||++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999888
No 324
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.00 E-value=0.0044 Score=70.97 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=53.8
Q ss_pred CCeEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCC
Q 000914 679 SPLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 752 (1226)
Q Consensus 679 ~P~Ilfi~die~~l~~------~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~p 752 (1226)
.+-||||||++.+... ..+..+.|-..|+.-.++++||++.... -++
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~-----------------------~~~---- 173 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD-----------------------RMD---- 173 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH-----------------------HHH----
Confidence 3469999999984321 1334445555666666788888887610 000
Q ss_pred CCccccccccccchHHHHHHhhhCCCeEEecCCchhHHHHHHHHHHhh
Q 000914 753 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLER 800 (1226)
Q Consensus 753 d~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRrw~~qLe~ 800 (1226)
.+ ......|..+|+..|.++++.++.+...|...+..
T Consensus 174 -~~----------~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 174 -SF----------FESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred -HH----------HhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 01 11235678899999999999988887777655443
No 325
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.96 E-value=0.0034 Score=74.48 Aligned_cols=96 Identities=24% Similarity=0.429 Sum_probs=61.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc--------chHHHHHHHHHHHHhcCCe
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAPS 1020 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~~G--------e~e~~I~~lF~~A~k~~Ps 1020 (1226)
+..-+||+|+||+|||+|+..+|... +.++++++..+-... .++ ..+..+..++..+....|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 34568999999999999999998765 457777776432111 011 0122355666667778899
Q ss_pred EEEEccccccccCCC--CCchHHHHHHHHHhhhhh
Q 000914 1021 VVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVN 1053 (1226)
Q Consensus 1021 ILfIDEID~L~~~r~--~~~~~e~l~~vl~~Ll~~ 1053 (1226)
+|+||+|..++.... .++.....+.++..|...
T Consensus 161 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~l 195 (372)
T cd01121 161 LVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRF 195 (372)
T ss_pred EEEEcchHHhhccccccCCCCHHHHHHHHHHHHHH
Confidence 999999998864332 123333445555554443
No 326
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.94 E-value=0.0037 Score=75.98 Aligned_cols=96 Identities=26% Similarity=0.433 Sum_probs=61.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc------ccc--------hHHHHHHHHHHHHhcCCe
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FGE--------GEKYVKAVFSLASKIAPS 1020 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~~------~Ge--------~e~~I~~lF~~A~k~~Ps 1020 (1226)
+..-+||+|+||+|||+|+..+|... +..+++++..+-.... ++. .+..+..++.......|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 34568999999999999999998765 6678888865422111 110 112345666667777899
Q ss_pred EEEEccccccccCCCC--CchHHHHHHHHHhhhhh
Q 000914 1021 VVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVN 1053 (1226)
Q Consensus 1021 ILfIDEID~L~~~r~~--~~~~e~l~~vl~~Ll~~ 1053 (1226)
+|+||+|..++..... ++.....+.++..|...
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ 193 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRL 193 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHH
Confidence 9999999988643211 23333344444444443
No 327
>PRK08118 topology modulation protein; Reviewed
Probab=96.93 E-value=0.0018 Score=68.37 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 992 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~ 992 (1226)
+.|+|+||||+||||||+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999988874
No 328
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.92 E-value=0.002 Score=67.47 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=37.3
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCcc
Q 000914 926 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 995 (1226)
Q Consensus 926 I~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~---fi~v~~s~L 995 (1226)
++|.++..++|...+.. .. ...++.++|+|++|+|||+|++++...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~----------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ----------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS----------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH----------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57888888888887641 11 2234789999999999999999998777332 777776554
No 329
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.91 E-value=0.02 Score=74.27 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=30.8
Q ss_pred CCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEec
Q 000914 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1226)
Q Consensus 492 ~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~ 527 (1226)
.+.+||.|||| .++++|||+||+.++.++.-++.
T Consensus 347 ~~~lll~GppG--~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 347 GPILCLVGPPG--VGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHhcCCeEEEeC
Confidence 35699999999 99999999999999999988874
No 330
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.84 E-value=0.017 Score=75.62 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=82.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--Cccc-ccc------------cc---------------chHHHHHH
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISM--SSIT-SKW------------FG---------------EGEKYVKA 1009 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~--s~L~-s~~------------~G---------------e~e~~I~~ 1009 (1226)
+-++|+||+|.|||+++...++..+ ++.-++. .+-. ..+ .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4599999999999999999887766 5544443 2200 000 00 00112223
Q ss_pred HHHHHHh-cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhcccc
Q 000914 1010 VFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 1088 (1226)
Q Consensus 1010 lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~ 1088 (1226)
++..... ..|.+|+|||++.+- + ......+..++.. . +..+.+|.++.....+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~~~---~----~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFLRH---Q----PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHHHh---C----CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333322 568999999999761 1 1122333333322 2 133444445544222321111211223
Q ss_pred ccCC----CCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 000914 1089 LMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1130 (1226)
Q Consensus 1089 I~l~----lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySg 1130 (1226)
+.+. ..+.++-.+++...+... .+..++..|...|+|+.-
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHH
Confidence 4454 567888888887654321 255667889999998743
No 331
>PRK07261 topology modulation protein; Provisional
Probab=96.84 E-value=0.0026 Score=67.31 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=29.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 993 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s 993 (1226)
.|+|.|+||+|||+||+.|+..++.+++.++.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 589999999999999999999999998877643
No 332
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.81 E-value=0.0047 Score=70.07 Aligned_cols=93 Identities=18% Similarity=0.296 Sum_probs=61.2
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-ccc
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SIT 996 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~v~~s-~L~ 996 (1226)
.++++++-..+..+.|++++.. +...++|.||+|+|||++++++..+.. ..++.+.-+ ++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4577888777777777776542 223589999999999999999987763 334444321 111
Q ss_pred cc-----ccc-chHHHHHHHHHHHHhcCCeEEEEcccc
Q 000914 997 SK-----WFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1028 (1226)
Q Consensus 997 s~-----~~G-e~e~~I~~lF~~A~k~~PsILfIDEID 1028 (1226)
-. .+. ........+...+.+..|.+|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 00 111 111235667777788999999999994
No 333
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.79 E-value=0.0019 Score=79.45 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=47.4
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 000914 922 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 992 (1226)
Q Consensus 922 tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el-g~~fi~v~~ 992 (1226)
-|+|+.|++++++.+.+++..... ++.....-++|.||||+|||+||+.||+.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 578999999999999988743111 122233568999999999999999999888 456666544
No 334
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.77 E-value=0.0014 Score=68.05 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
++..|+|+|+||+|||++|+++|+.++++|+..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3468999999999999999999999999888644
No 335
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.76 E-value=0.035 Score=62.18 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=45.7
Q ss_pred cccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCC
Q 000914 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (1226)
Q Consensus 450 ~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a 520 (1226)
.|.+|+.=.| |..|..|+.-+..+|+.. ....+||.|+.| .++..|||||.++|..
T Consensus 23 ~~~l~~L~Gi--e~Qk~~l~~Nt~~Fl~G~-----------pannvLL~G~rG--tGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 23 PIRLDDLIGI--ERQKEALIENTEQFLQGL-----------PANNVLLWGARG--TGKSSLVKALLNEYAD 78 (249)
T ss_pred CCCHHHhcCH--HHHHHHHHHHHHHHHcCC-----------CCcceEEecCCC--CCHHHHHHHHHHHHhh
Confidence 4678888889 999999998887666542 234689999999 8999999999998754
No 336
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.74 E-value=0.0097 Score=69.30 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=43.8
Q ss_pred cccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEE
Q 000914 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1226)
Q Consensus 452 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~ 525 (1226)
+|++|-+- ++.+..|....-..... ....+.+||+||+| ++++.||+++|+++++++...
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG--~GKT~la~~ia~~l~~~~~~~ 82 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPG--LGKTTLANIIANEMGVNIRIT 82 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCC--ccHHHHHHHHHHHhCCCeEEE
Confidence 68887777 88777776555322211 12346799999999 999999999999998765443
No 337
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.74 E-value=0.0054 Score=67.23 Aligned_cols=36 Identities=36% Similarity=0.588 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 993 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s 993 (1226)
+..-++|+|+||+|||+++..+|.+. +..++.+++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 33558999999999999999998755 6778888876
No 338
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.71 E-value=0.011 Score=65.79 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------c-----------------------cc--ch
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------W-----------------------FG--EG 1003 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~-----------------------~G--e~ 1003 (1226)
+..-++|.|++|||||+|+..++... +...++++..+-... . .+ ..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 34569999999999999986665544 556666664321000 0 00 01
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccc
Q 000914 1004 EKYVKAVFSLASKIAPSVVFVDEVDSML 1031 (1226)
Q Consensus 1004 e~~I~~lF~~A~k~~PsILfIDEID~L~ 1031 (1226)
+..+..+...+....|.+++|||+-.++
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 3344555566556678999999998764
No 339
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.66 E-value=0.011 Score=70.98 Aligned_cols=121 Identities=19% Similarity=0.225 Sum_probs=70.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchH
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1040 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~ 1040 (1226)
-++|+||.++|||++++.+.....-.++.++..++......- ......+..+.......||||||+.+ ++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v------~~-- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV------PD-- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc------hh--
Confidence 799999999999999988888875556777666654432221 12222333333335579999999876 11
Q ss_pred HHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC--CCCcHHHHhhccccccCCCCCHHHHHH
Q 000914 1041 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP--FDLDEAVVRRLPRRLMVNLPDAPNREK 1101 (1226)
Q Consensus 1041 e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p--~~Ld~aLlrRF~~~I~l~lPd~eeR~e 1101 (1226)
+...+-...|.. +.++++.+++... ..+.+.+..|. ..+.+.+.+..+...
T Consensus 109 -----W~~~lk~l~d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 -----WERALKYLYDRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred -----HHHHHHHHHccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 112222222221 1134554444322 23445555675 667777888888754
No 340
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.65 E-value=0.009 Score=69.51 Aligned_cols=76 Identities=25% Similarity=0.321 Sum_probs=51.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------------ccccchHHHHHHHHHHHHhcC
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 1018 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s----------------~~~Ge~e~~I~~lF~~A~k~~ 1018 (1226)
+..-++|+||||+|||+||..++.+. +..++.++...... ......+..+..+....+...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 33558999999999999988876554 66777776543111 111223444544555556677
Q ss_pred CeEEEEccccccccC
Q 000914 1019 PSVVFVDEVDSMLGR 1033 (1226)
Q Consensus 1019 PsILfIDEID~L~~~ 1033 (1226)
+.+|+||-+..|.+.
T Consensus 134 ~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 134 VDIIVVDSVAALVPK 148 (321)
T ss_pred CcEEEEcchhhhccc
Confidence 899999999998753
No 341
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.62 E-value=0.0039 Score=67.51 Aligned_cols=67 Identities=21% Similarity=0.335 Sum_probs=43.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecC-ccc---------cccccchHHHHHHHHHHHHhcCCeEEEEcc
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGA----NFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVDE 1026 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~----~fi~v~~s-~L~---------s~~~Ge~e~~I~~lF~~A~k~~PsILfIDE 1026 (1226)
-++|.||+|+|||+++++++..+.. .++.+..+ ++. ...++.....+...+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3899999999999999999888742 23332221 111 001122222345566677778899999999
Q ss_pred c
Q 000914 1027 V 1027 (1226)
Q Consensus 1027 I 1027 (1226)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 342
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.61 E-value=0.0057 Score=74.34 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=36.9
Q ss_pred ccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhC
Q 000914 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 519 (1226)
Q Consensus 449 i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~ 519 (1226)
-..|||+|- ..+..+.++..|-.+ + .+-....+.++|+||+| ++++.|++|+|++..
T Consensus 117 ~~~tfd~fv--~g~~n~~a~~~~~~~-------~---~~~~~~~~~l~l~G~~G--~GKThL~~ai~~~~~ 173 (450)
T PRK00149 117 PKYTFDNFV--VGKSNRLAHAAALAV-------A---ENPGKAYNPLFIYGGVG--LGKTHLLHAIGNYIL 173 (450)
T ss_pred CCCcccccc--cCCCcHHHHHHHHHH-------H---hCcCccCCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 345899974 345555444433321 1 11112335699999999 999999999999873
No 343
>PRK04296 thymidine kinase; Provisional
Probab=96.61 E-value=0.014 Score=62.77 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=40.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC----c----cccccccch-H----HHHHHHHHHHH--hcCCeEE
Q 000914 961 GILLFGPPGTGKTMLAKAVATEA---GANFINISMS----S----ITSKWFGEG-E----KYVKAVFSLAS--KIAPSVV 1022 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s----~----L~s~~~Ge~-e----~~I~~lF~~A~--k~~PsIL 1022 (1226)
-+|++||+|+|||+++..++..+ +..++.+... . +.+. .|.. . .....++..+. .....+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 37999999999999998888766 5555555331 1 1111 1110 0 11223333332 2356899
Q ss_pred EEcccccc
Q 000914 1023 FVDEVDSM 1030 (1226)
Q Consensus 1023 fIDEID~L 1030 (1226)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999765
No 344
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.54 E-value=0.0073 Score=79.36 Aligned_cols=141 Identities=19% Similarity=0.250 Sum_probs=87.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--cccccc----hH---HHHHHHHHHHHhcCCeEEEEcccccc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGE----GE---KYVKAVFSLASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~--s~~~Ge----~e---~~I~~lF~~A~k~~PsILfIDEID~L 1030 (1226)
-.+||.||+.+|||.++..+|.+.|..|++++--+-. ..|+|. .. ..-.+++..|.+. .--|++||+..-
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~-GyWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR-GYWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc-CcEEEeeccccC
Confidence 3599999999999999999999999999999964421 122221 11 1122344455442 257899999643
Q ss_pred ccCCCCCchHHHHHHHHHhhhhhc-c--CCcccCCCcEEEEEecCCCC------CCcHHHHhhccccccCCCCCHHHHHH
Q 000914 1031 LGRRENPGEHEAMRKMKNEFMVNW-D--GLRTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPNREK 1101 (1226)
Q Consensus 1031 ~~~r~~~~~~e~l~~vl~~Ll~~l-d--gl~~k~~~~VlVIaTTN~p~------~Ld~aLlrRF~~~I~l~lPd~eeR~e 1101 (1226)
....-+++++++..-...+ . ...-.++..+++.||-|+|. -|..+++.|| ..++|.--..++...
T Consensus 968 -----pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedEle~ 1041 (4600)
T COG5271 968 -----PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDELEE 1041 (4600)
T ss_pred -----cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHHHHH
Confidence 1122333333332111000 0 00112356788899999874 5778999999 667777666777777
Q ss_pred HHHHHH
Q 000914 1102 IIRVIL 1107 (1226)
Q Consensus 1102 ILk~lL 1107 (1226)
||+.-+
T Consensus 1042 ILh~rc 1047 (4600)
T COG5271 1042 ILHGRC 1047 (4600)
T ss_pred HHhccC
Confidence 776543
No 345
>PRK13695 putative NTPase; Provisional
Probab=96.52 E-value=0.011 Score=62.29 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000914 961 GILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~el 983 (1226)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988775
No 346
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.50 E-value=0.014 Score=66.83 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=42.4
Q ss_pred cccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEe
Q 000914 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1226)
Q Consensus 452 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D 526 (1226)
+|++|=.. ++.+..|..+.-..... ....+.+||+||+| .++++||+++|++++.++..++
T Consensus 2 ~~~~~iG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~Gp~G--~GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 2 LLAEFIGQ--EKVKEQLQLFIEAAKMR----------QEALDHLLLYGPPG--LGKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred CHHHHcCH--HHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCC--CCHHHHHHHHHHHhCCCEEEec
Confidence 46665555 77777776655322221 12345699999999 9999999999999987665543
No 347
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.49 E-value=0.0061 Score=72.26 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=44.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-----c-EEEEecCc---------------cccccccchHHHHH---HHHHHHH
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGA-----N-FINISMSS---------------ITSKWFGEGEKYVK---AVFSLAS 1015 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~-----~-fi~v~~s~---------------L~s~~~Ge~e~~I~---~lF~~A~ 1015 (1226)
...||+||+|+|||+|++.|++.... . ++.+.... +.+.+-......++ .++..|.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999987733 2 22222211 22222223333333 3444444
Q ss_pred h----cCCeEEEEccccccc
Q 000914 1016 K----IAPSVVFVDEVDSML 1031 (1226)
Q Consensus 1016 k----~~PsILfIDEID~L~ 1031 (1226)
. ....+||||||+++.
T Consensus 250 ~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHcCCCEEEEEEChHHHH
Confidence 3 245799999999986
No 348
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.46 E-value=0.011 Score=68.99 Aligned_cols=74 Identities=27% Similarity=0.337 Sum_probs=50.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc----------------ccccccchHHHHHHHHHHHHhcCCe
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 1020 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L----------------~s~~~Ge~e~~I~~lF~~A~k~~Ps 1020 (1226)
+-++|+||||+|||+||-.++.+. +...+.++...- .-......+..+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 458999999999999999887544 667777776331 1111122344444444455666789
Q ss_pred EEEEccccccccC
Q 000914 1021 VVFVDEVDSMLGR 1033 (1226)
Q Consensus 1021 ILfIDEID~L~~~ 1033 (1226)
+|+||-+-.|+++
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999998753
No 349
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.45 E-value=0.0053 Score=61.84 Aligned_cols=31 Identities=52% Similarity=0.816 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 994 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~ 994 (1226)
|++.||||+|||++|+.++..++..+ ++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~--i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV--ISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE--EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE--EeHHH
Confidence 79999999999999999999999444 44433
No 350
>PRK14974 cell division protein FtsY; Provisional
Probab=96.43 E-value=0.023 Score=66.69 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 993 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s 993 (1226)
+.-++|.|++|+|||+++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4679999999999999999998776 5555555543
No 351
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.41 E-value=0.0076 Score=65.29 Aligned_cols=34 Identities=41% Similarity=0.602 Sum_probs=25.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 993 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s 993 (1226)
+-++|.|+||||||++++.++..+ +..++.+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 458899999999999999987655 6677766653
No 352
>PHA02774 E1; Provisional
Probab=96.40 E-value=0.023 Score=70.26 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISM 992 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~-v~~ 992 (1226)
+.++|+||||||||++|.+|++.++..++. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 579999999999999999999999655544 553
No 353
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.39 E-value=0.012 Score=69.13 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=81.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE--EEEecCccccc-----------c----cc-------chHHHHHHHH
Q 000914 956 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF--INISMSSITSK-----------W----FG-------EGEKYVKAVF 1011 (1226)
Q Consensus 956 ~kP~~gVLL~GPPGTGKT~LArAIA~elg~~f--i~v~~s~L~s~-----------~----~G-------e~e~~I~~lF 1011 (1226)
..+|+||+|||.-|||||+|.-.+-..+.... .+|..-+++.. . .+ ..-..+..-+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 55789999999999999999988764442100 00110010000 0 00 0001111111
Q ss_pred HHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC-CCCCcHHHHhh--cccc
Q 000914 1012 SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRR--LPRR 1088 (1226)
Q Consensus 1012 ~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~-p~~Ld~aLlrR--F~~~ 1088 (1226)
...-.+|.+||+..- +-...-.+++++..|+. ..|+++||+|+ |++|-..-+.| |..
T Consensus 191 ----a~ea~lLCFDEfQVT-----DVADAmiL~rLf~~Lf~----------~GvVlvATSNR~P~dLYknGlQR~~F~P- 250 (467)
T KOG2383|consen 191 ----AEEAILLCFDEFQVT-----DVADAMILKRLFEHLFK----------NGVVLVATSNRAPEDLYKNGLQRENFIP- 250 (467)
T ss_pred ----hhhceeeeechhhhh-----hHHHHHHHHHHHHHHHh----------CCeEEEEeCCCChHHHhhcchhhhhhhh-
Confidence 112369999999643 21223344555554432 35889999987 45555433333 311
Q ss_pred ccCCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcC-C--CcHH-HHHHHHHHH
Q 000914 1089 LMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMAD-G--YSGS-DLKNLCVTA 1140 (1226)
Q Consensus 1089 I~l~lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~Te-G--ySgs-DL~~L~~~A 1140 (1226)
-..+|+..+.-..+.+.+|....+.-.+ + |.+. |+..++++-
T Consensus 251 ----------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~ 296 (467)
T KOG2383|consen 251 ----------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEW 296 (467)
T ss_pred ----------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHH
Confidence 1356777777677778888884443322 2 2333 666655543
No 354
>PRK13947 shikimate kinase; Provisional
Probab=96.38 E-value=0.0031 Score=65.87 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
+|+|.|+||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997765
No 355
>PRK03839 putative kinase; Provisional
Probab=96.38 E-value=0.0029 Score=66.96 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
.|+|.|+||+|||++++.||+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999997765
No 356
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.36 E-value=0.021 Score=62.18 Aligned_cols=35 Identities=37% Similarity=0.580 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 993 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s 993 (1226)
..-++|+|+||+|||+|+..+|.+. +.+++.++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3558999999999999999998765 5677777653
No 357
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.34 E-value=0.0062 Score=72.72 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=37.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEcccccc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el----g~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L 1030 (1226)
.++++.||+|||||+|+.+|+.+. | -.++.+.|+.. ... ..+. .-....+|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~----L~~---~~lg--~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYN----IST---RQIG--LVGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHH----HHH---HHHh--hhccCCEEEEEcCCCC
Confidence 589999999999999999998772 3 22222232221 111 1111 1123489999999876
No 358
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.34 E-value=0.009 Score=72.34 Aligned_cols=94 Identities=23% Similarity=0.293 Sum_probs=62.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCce-EEEEcCCCChHHHHHHHHHHHhCCcEEEEec-Cc--
Q 000914 919 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG-ILLFGPPGTGKTMLAKAVATEAGANFINISM-SS-- 994 (1226)
Q Consensus 919 ~~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~g-VLL~GPPGTGKT~LArAIA~elg~~fi~v~~-s~-- 994 (1226)
...+|++++......+.+.+.+.. | .| +|++||+|+|||+...++.++++.+..+|-. .+
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~---------------p-~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPV 296 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNR---------------P-QGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPV 296 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhC---------------C-CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCe
Confidence 356788999998888888887652 3 45 7999999999999999999998654443221 11
Q ss_pred ------ccccccc-chHHHHHHHHHHHHhcCCeEEEEcccc
Q 000914 995 ------ITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1028 (1226)
Q Consensus 995 ------L~s~~~G-e~e~~I~~lF~~A~k~~PsILfIDEID 1028 (1226)
+..--+. ...-.....+...-++.|.||+|.||-
T Consensus 297 E~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 297 EYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 1100000 001123345556678899999999995
No 359
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.34 E-value=0.034 Score=64.77 Aligned_cols=100 Identities=18% Similarity=0.332 Sum_probs=57.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-EEEecCccccc-------cccchHHHHHHHHHHHHh--cCCeEEEEc
Q 000914 956 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITSK-------WFGEGEKYVKAVFSLASK--IAPSVVFVD 1025 (1226)
Q Consensus 956 ~kP~~gVLL~GPPGTGKT~LArAIA~elg~~f-i~v~~s~L~s~-------~~Ge~e~~I~~lF~~A~k--~~PsILfID 1025 (1226)
..+++|+.|+|+-|.|||+|.-..-+.+..+- ..+..-.++.. ..|+. .. +...|.. ..--||.||
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dp---l~~iA~~~~~~~~vLCfD 137 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DP---LPPIADELAAETRVLCFD 137 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-Cc---cHHHHHHHHhcCCEEEee
Confidence 34679999999999999999999987774322 11111111100 11111 00 1111111 122599999
Q ss_pred cccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCC
Q 000914 1026 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1074 (1226)
Q Consensus 1026 EID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p 1074 (1226)
|++.= +.++...+.+++++|+. ..|.+++|+|.+
T Consensus 138 EF~Vt-----DI~DAMiL~rL~~~Lf~----------~GV~lvaTSN~~ 171 (367)
T COG1485 138 EFEVT-----DIADAMILGRLLEALFA----------RGVVLVATSNTA 171 (367)
T ss_pred eeeec-----ChHHHHHHHHHHHHHHH----------CCcEEEEeCCCC
Confidence 99742 33444455666666652 468999999863
No 360
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.33 E-value=0.086 Score=61.89 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=37.0
Q ss_pred cccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhC
Q 000914 454 ESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 519 (1226)
Q Consensus 454 d~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~ 519 (1226)
++||+- |...+.|.....-.+. ...++.|+++||+| ++++++++++++++.
T Consensus 15 ~~l~gR--e~e~~~l~~~l~~~~~-----------~~~~~~i~I~G~~G--tGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 15 DRIVHR--DEQIEELAKALRPILR-----------GSRPSNVFIYGKTG--TGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCc--HHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCC--CCHHHHHHHHHHHHH
Confidence 466665 7777777665442221 13456799999999 999999999999875
No 361
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.011 Score=70.17 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el 983 (1226)
..++|.||+|+|||+++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999998764
No 362
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.30 E-value=0.006 Score=68.83 Aligned_cols=96 Identities=21% Similarity=0.378 Sum_probs=58.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-ccc
Q 000914 921 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SIT 996 (1226)
Q Consensus 921 ~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~v~~s-~L~ 996 (1226)
.++++++-.....+.+.+++...+ +....+|+.|++|+|||+++++++.+.. ..++.+.-. ++.
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 456666666655566666554311 1235799999999999999999998873 344444421 111
Q ss_pred cc------cc-cchHHHHHHHHHHHHhcCCeEEEEcccc
Q 000914 997 SK------WF-GEGEKYVKAVFSLASKIAPSVVFVDEVD 1028 (1226)
Q Consensus 997 s~------~~-Ge~e~~I~~lF~~A~k~~PsILfIDEID 1028 (1226)
-. .. .........++..+.+..|.+|+|.||-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 11 00 1123346677788888999999999995
No 363
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.27 E-value=0.024 Score=60.31 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=45.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHH--------------------HHHHHHHHHHhcCCe
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 1020 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~--------------------~I~~lF~~A~k~~Ps 1020 (1226)
.+|+.|+||+|||++|..++..++.+++++........ +..+ .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999998877777765442211 1111 123333211 23457
Q ss_pred EEEEcccccccc
Q 000914 1021 VVFVDEVDSMLG 1032 (1226)
Q Consensus 1021 ILfIDEID~L~~ 1032 (1226)
+|+||-+..|..
T Consensus 79 ~VlID~Lt~~~~ 90 (170)
T PRK05800 79 CVLVDCLTTWVT 90 (170)
T ss_pred EEEehhHHHHHH
Confidence 899999998864
No 364
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.003 Score=72.03 Aligned_cols=84 Identities=30% Similarity=0.425 Sum_probs=61.3
Q ss_pred ccCCCccccccccccccc-chHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCe
Q 000914 443 ILGPENIEVSFESFPYYL-SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1226)
Q Consensus 443 vv~~~~i~vsfd~fpyyl-se~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~ 521 (1226)
+-.|.+|.--.|+ |-+ -|..|.+|-=|+|-|-|.-.+...-.+.-=.---|||-||.| .+++.||+.||+.+.++
T Consensus 49 lPtP~eik~~Ld~--YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTG--sGKTlLAqTLAk~LnVP 124 (408)
T COG1219 49 LPTPKEIKAHLDE--YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTG--SGKTLLAQTLAKILNVP 124 (408)
T ss_pred CCChHHHHHHhhh--heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCC--CcHHHHHHHHHHHhCCC
Confidence 3334444444444 333 489999999999999776443322222333334699999999 79999999999999999
Q ss_pred EEEEeccCC
Q 000914 522 LLIVDSLLL 530 (1226)
Q Consensus 522 lL~~D~~~~ 530 (1226)
+-+-|.+.|
T Consensus 125 FaiADATtL 133 (408)
T COG1219 125 FAIADATTL 133 (408)
T ss_pred eeeccccch
Confidence 999999877
No 365
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.26 E-value=0.004 Score=63.56 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988655
No 366
>PRK13948 shikimate kinase; Provisional
Probab=96.26 E-value=0.0045 Score=66.44 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 956 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 956 ~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
.+++..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456688999999999999999999999999998666
No 367
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.25 E-value=0.023 Score=62.66 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=46.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEecC-ccccccccch-------------HHHHHHHHHHHHhc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISMS-SITSKWFGEG-------------EKYVKAVFSLASKI 1017 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el--g------~~fi~v~~s-~L~s~~~Ge~-------------e~~I~~lF~~A~k~ 1017 (1226)
.+.||.||||+|||+|.|-||+-+ | ..+.-++-. ++.+...|.. .-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999877 2 223334432 2322222211 11233456667889
Q ss_pred CCeEEEEcccccc
Q 000914 1018 APSVVFVDEVDSM 1030 (1226)
Q Consensus 1018 ~PsILfIDEID~L 1030 (1226)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999754
No 368
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.25 E-value=0.02 Score=60.89 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=46.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc-----------------ccchHHHHHHHHHHHHhcCCeEEEE
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-----------------FGEGEKYVKAVFSLASKIAPSVVFV 1024 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~-----------------~Ge~e~~I~~lF~~A~k~~PsILfI 1024 (1226)
+||.|++|+|||++|..++...+.+.+++....-...- ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998887788887655422110 001112233333211 14679999
Q ss_pred ccccccccCC
Q 000914 1025 DEVDSMLGRR 1034 (1226)
Q Consensus 1025 DEID~L~~~r 1034 (1226)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887543
No 369
>PRK00625 shikimate kinase; Provisional
Probab=96.25 E-value=0.0041 Score=66.24 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
.|+|.|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 370
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0034 Score=64.79 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
.+||++|-||||||+|+..||..++++++.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 47999999999999999999999999998775
No 371
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.24 E-value=0.022 Score=57.75 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=38.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el 983 (1226)
+|.|+.-+.+.+...+...+..+ . .+.|--+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~-p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------N-PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------C-CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 57888888888877776544321 1 1222446799999999999999999986
No 372
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.20 E-value=0.037 Score=62.43 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGA 985 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~ 985 (1226)
..++|+||+|+|||+|++.|++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46999999999999999999988743
No 373
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.19 E-value=0.016 Score=69.44 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=22.5
Q ss_pred CCceeecCCCChhHHHHHHHHHHHhhh
Q 000914 492 CPRILLSGPAGSEIYQETLAKALAKHF 518 (1226)
Q Consensus 492 ~~~ILLsgp~GsE~Yqe~LaKALA~~f 518 (1226)
...+||+||+| .+++.|++|+|++.
T Consensus 136 ~n~l~l~G~~G--~GKThL~~ai~~~l 160 (405)
T TIGR00362 136 YNPLFIYGGVG--LGKTHLLHAIGNEI 160 (405)
T ss_pred CCeEEEECCCC--CcHHHHHHHHHHHH
Confidence 34689999999 89999999999987
No 374
>PRK10536 hypothetical protein; Provisional
Probab=96.18 E-value=0.042 Score=62.10 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 000914 961 GILLFGPPGTGKTMLAKAVATE 982 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~e 982 (1226)
-++++||+|||||+||.+++.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999885
No 375
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.17 E-value=0.027 Score=61.31 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=40.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----hCCcEE-------------EEecCc-cccc--cccchHHHHHHHHHHHHhcC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATE-----AGANFI-------------NISMSS-ITSK--WFGEGEKYVKAVFSLASKIA 1018 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~e-----lg~~fi-------------~v~~s~-L~s~--~~Ge~e~~I~~lF~~A~k~~ 1018 (1226)
+-++|+||+|+|||+|++.|+.. .|.++- .+...+ +... .+......+..++..+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 56899999999999999999743 344321 111111 1000 01111133555666655457
Q ss_pred CeEEEEcccc
Q 000914 1019 PSVVFVDEVD 1028 (1226)
Q Consensus 1019 PsILfIDEID 1028 (1226)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 8999999974
No 376
>PRK10867 signal recognition particle protein; Provisional
Probab=96.16 E-value=0.15 Score=62.00 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccc---------------cc-----cchHHHHHHHHHH
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK---------------WF-----GEGEKYVKAVFSL 1013 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~v~~s~L~s~---------------~~-----Ge~e~~I~~lF~~ 1013 (1226)
++.-|++.|++|+|||+++..+|..+ |..+..+++...... ++ .............
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45679999999999999888887655 556666665432110 01 1122333445556
Q ss_pred HHhcCCeEEEEcccccc
Q 000914 1014 ASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 1014 A~k~~PsILfIDEID~L 1030 (1226)
++.....+|+||=..++
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66666689999988665
No 377
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.16 E-value=0.023 Score=69.28 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=51.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------cccc--------hHHHHHHHHHHHHhcCCe
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAPS 1020 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~~Ge--------~e~~I~~lF~~A~k~~Ps 1020 (1226)
+..-+||.|+||+|||+|+..++... +.++++++..+-... .++. .+..+..+...+.+..|.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~ 172 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQ 172 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCc
Confidence 44568999999999999999997765 456777776442111 0110 112345556666777899
Q ss_pred EEEEcccccccc
Q 000914 1021 VVFVDEVDSMLG 1032 (1226)
Q Consensus 1021 ILfIDEID~L~~ 1032 (1226)
+|+||.|..+..
T Consensus 173 ~vVIDSIq~l~~ 184 (454)
T TIGR00416 173 ACVIDSIQTLYS 184 (454)
T ss_pred EEEEecchhhcc
Confidence 999999998864
No 378
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.14 E-value=0.037 Score=60.74 Aligned_cols=77 Identities=22% Similarity=0.406 Sum_probs=50.1
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCcccc-----------------------------cc
Q 000914 953 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITS-----------------------------KW 999 (1226)
Q Consensus 953 ~~l~kP~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~v~~s~L~s-----------------------------~~ 999 (1226)
+|+ .+..-+||.||||+|||.|+..++.+. |-+.+.++..+-.. ..
T Consensus 14 GGi-p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 14 GGI-PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCC-CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 443 344669999999999999999876443 77777777533100 00
Q ss_pred ----ccchHHHHHHHHHHHHhcCCeEEEEcccccc
Q 000914 1000 ----FGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1030 (1226)
Q Consensus 1000 ----~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L 1030 (1226)
....+..+..+........+.+++||.+..+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 0122344555666667778899999999998
No 379
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.14 E-value=0.016 Score=68.85 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=45.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecC-ccc-----------cccccchHHHHHHHHHHHHhcCCeEEE
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVVF 1023 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg-----~~fi~v~~s-~L~-----------s~~~Ge~e~~I~~lF~~A~k~~PsILf 1023 (1226)
.+|++||+|+|||+++++++.+.. ..++.+.-+ ++. ...+|............+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 345544322 111 011122222345667778888999999
Q ss_pred Ecccc
Q 000914 1024 VDEVD 1028 (1226)
Q Consensus 1024 IDEID 1028 (1226)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99994
No 380
>PRK14532 adenylate kinase; Provisional
Probab=96.14 E-value=0.0048 Score=65.72 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
.|+|.||||+|||++|+.||+.+|+.++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999998766543
No 381
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.14 E-value=0.045 Score=60.56 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc--------------c-------------------cc
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--------------W-------------------FG 1001 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~--------------~-------------------~G 1001 (1226)
+..-++|+|+||+|||+|+..++.+. +...+.++..+-... + ..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 34669999999999999999997653 666666665331000 0 00
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEccccccc
Q 000914 1002 EGEKYVKAVFSLASKIAPSVVFVDEVDSML 1031 (1226)
Q Consensus 1002 e~e~~I~~lF~~A~k~~PsILfIDEID~L~ 1031 (1226)
..+..+..+........|.+|+||++..+.
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 012233344444455688999999998663
No 382
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.13 E-value=0.03 Score=73.58 Aligned_cols=138 Identities=19% Similarity=0.282 Sum_probs=81.9
Q ss_pred CceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhc--------------CCeEEE
Q 000914 959 CKGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI--------------APSVVF 1023 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~L-ArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~--------------~PsILf 1023 (1226)
.++++++||||+|||+| ..++-.++-..++.+|.+.-.. ++..+..+-+..... .-.|||
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLF 1568 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLF 1568 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheEEE
Confidence 47899999999999995 5677777777787777543111 111222211111111 114999
Q ss_pred EccccccccCCCCCchHH---HHHHHHHh------hhhhccCCcccCCCcEEEEEecCCCCC-----CcHHHHhhccccc
Q 000914 1024 VDEVDSMLGRRENPGEHE---AMRKMKNE------FMVNWDGLRTKDKERVLVLAATNRPFD-----LDEAVVRRLPRRL 1089 (1226)
Q Consensus 1024 IDEID~L~~~r~~~~~~e---~l~~vl~~------Ll~~ldgl~~k~~~~VlVIaTTN~p~~-----Ld~aLlrRF~~~I 1089 (1226)
.|||. | +....-..+. .++.++.. +...|..+ .++.+.|++|++.+ ..+.++||= ..+
T Consensus 1569 cDeIn-L-p~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-----~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~v 1640 (3164)
T COG5245 1569 CDEIN-L-PYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-----CGIILYGACNPGTDEGRVKYYERFIRKP-VFV 1640 (3164)
T ss_pred eeccC-C-ccccccCCCceEEeeHHHHHhcccccchhhhHhhh-----cceEEEccCCCCCCcccCccHHHHhcCc-eEE
Confidence 99998 3 3322211111 22333222 11222221 56899999998754 345666653 457
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q 000914 1090 MVNLPDAPNREKIIRVILAK 1109 (1226)
Q Consensus 1090 ~l~lPd~eeR~eILk~lL~k 1109 (1226)
.+..|.......|.+.++..
T Consensus 1641 f~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EecCcchhhHHHHHHHHHHH
Confidence 78899999999998888765
No 383
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.11 E-value=0.0055 Score=73.18 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=59.9
Q ss_pred ccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEecc
Q 000914 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1226)
Q Consensus 449 i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~ 528 (1226)
|.-..+.| .+--++.|.+|.-|.|.|.+...+..-.++ ....++|||.||+| .++.+||||||+.++++++-+|.+
T Consensus 6 I~~~Ld~~-IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~-e~~p~~ILLiGppG--~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 6 IVAELDKY-IIGQDNAKKSVAIALRNRYRRSQLNEELKD-EVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred HHHHHhhh-ccCHHHHHHHHHHHHHhhhhhhcccccccc-ccCCceEEEECCCC--CCHHHHHHHHHHHhCCeEEEeecc
Confidence 33334443 333589999999999999777655432222 22337899999999 999999999999999999999998
Q ss_pred CCC
Q 000914 529 LLP 531 (1226)
Q Consensus 529 ~~~ 531 (1226)
.+.
T Consensus 82 ~~~ 84 (441)
T TIGR00390 82 KFT 84 (441)
T ss_pred eee
Confidence 775
No 384
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.11 E-value=0.021 Score=70.22 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=61.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-cc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 995 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~v~~s-~L 995 (1226)
..++++++-.++..+.+++++.. +..-+|++||+|+|||++..++..++. .+++.+.-+ ++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 45778888888888888776642 212379999999999999998877763 345444321 11
Q ss_pred c-----cccccc-hHHHHHHHHHHHHhcCCeEEEEcccc
Q 000914 996 T-----SKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1028 (1226)
Q Consensus 996 ~-----s~~~Ge-~e~~I~~lF~~A~k~~PsILfIDEID 1028 (1226)
. ...+.. .......+...+.++.|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 101111 11234455666778999999999994
No 385
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.11 E-value=0.0048 Score=65.14 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~ 996 (1226)
|+|+|+||+|||++|+.||..+++.. +++.++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHH
Confidence 78999999999999999999998654 4544443
No 386
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.11 E-value=0.045 Score=60.89 Aligned_cols=39 Identities=28% Similarity=0.494 Sum_probs=28.4
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000914 953 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 992 (1226)
Q Consensus 953 ~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~ 992 (1226)
+|+ .+...+||+||||+|||+||..++.+. |-+.+.++.
T Consensus 16 GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 453 345679999999999999998876542 556655554
No 387
>PRK13949 shikimate kinase; Provisional
Probab=96.10 E-value=0.0049 Score=65.21 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
+.|+|.|+||+|||++++.+|+.++++|+.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999998876
No 388
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.09 E-value=0.012 Score=66.95 Aligned_cols=69 Identities=26% Similarity=0.375 Sum_probs=43.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-cCccccc-------cccc------hHHHHHHHHHHHH
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSK-------WFGE------GEKYVKAVFSLAS 1015 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~----------~fi~v~-~s~L~s~-------~~Ge------~e~~I~~lF~~A~ 1015 (1226)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++... .++. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999988732 222121 0111100 0110 1112335667777
Q ss_pred hcCCeEEEEcccc
Q 000914 1016 KIAPSVVFVDEVD 1028 (1226)
Q Consensus 1016 k~~PsILfIDEID 1028 (1226)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999963
No 389
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.09 E-value=0.4 Score=55.28 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 000914 957 KPCKGILLFGPPGTGKTMLAKAVATEAGA 985 (1226)
Q Consensus 957 kP~~gVLL~GPPGTGKT~LArAIA~elg~ 985 (1226)
.++..|.|+|+=|+|||++.+.+-+++.-
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35578999999999999999999888743
No 390
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.08 E-value=0.04 Score=60.87 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 993 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~v~~s 993 (1226)
+..-++|.|+||+|||+++..++... +.+++.+++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 44568999999999999999886654 7777777753
No 391
>PRK05973 replicative DNA helicase; Provisional
Probab=96.08 E-value=0.043 Score=61.40 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 000914 957 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 993 (1226)
Q Consensus 957 kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s 993 (1226)
.+..-+||.|+||+|||+|+-.++.+. |.+++.++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 444669999999999999999887655 6666666643
No 392
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.056 Score=64.67 Aligned_cols=129 Identities=20% Similarity=0.224 Sum_probs=67.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcE--EEEecCccc--------cc------cccchHHHHHHHHHHHH
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA-------GANF--INISMSSIT--------SK------WFGEGEKYVKAVFSLAS 1015 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el-------g~~f--i~v~~s~L~--------s~------~~Ge~e~~I~~lF~~A~ 1015 (1226)
+..++|+||+|+|||+++..+|..+ +..+ +.+++.... .. ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3579999999999999999998765 2333 444431110 00 0111122233333322
Q ss_pred hcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhcc----ccccC
Q 000914 1016 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP----RRLMV 1091 (1226)
Q Consensus 1016 k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~----~~I~l 1091 (1226)
..-.+|+||.+.++. .....+ .++...++.... ....++|+.+|.....+.. ++.+|. ..+.+
T Consensus 253 -~~~DlVLIDTaGr~~------~~~~~l----~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~-~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP------KDFMKL----AEMKELLNACGR-DAEFHLAVSSTTKTSDVKE-IFHQFSPFSYKTVIF 319 (388)
T ss_pred -CCCCEEEEcCCCCCc------cCHHHH----HHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHH-HHHHhcCCCCCEEEE
Confidence 335799999998762 111112 222222222221 2256788888877666664 444442 23445
Q ss_pred CCCCHHHHHH
Q 000914 1092 NLPDAPNREK 1101 (1226)
Q Consensus 1092 ~lPd~eeR~e 1101 (1226)
.-.|...+.-
T Consensus 320 TKlDet~~~G 329 (388)
T PRK12723 320 TKLDETTCVG 329 (388)
T ss_pred EeccCCCcch
Confidence 5555544433
No 393
>PRK06217 hypothetical protein; Validated
Probab=96.07 E-value=0.0057 Score=65.17 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
..|+|.|++|+|||++|++|++.++++++.++
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 35999999999999999999999999887765
No 394
>PRK13764 ATPase; Provisional
Probab=96.04 E-value=0.018 Score=72.05 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=41.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe------cCccccccccchHHHHHHHHHHHHhcCCeEEEEcccc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS------MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1028 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg---~~fi~v~------~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID 1028 (1226)
.+||++||+|+||||++++++.++. ..+..+. .......+. ............+.+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998874 3232332 111111110 000112223333456789999999994
No 395
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.03 E-value=0.073 Score=63.20 Aligned_cols=54 Identities=28% Similarity=0.403 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhh-c-cChhhHHHHHHHHhcCCC-CEEEEEecc
Q 000914 664 AINELFEVALNESKSSPLIVFVKDIEKSL-T-GNNDAYGALKSKLENLPS-NVVVIGSHT 720 (1226)
Q Consensus 664 ~~~~l~evl~~es~~~P~Ilfi~die~~l-~-~~~~~~~~l~~~L~~l~g-~vvvIgs~~ 720 (1226)
+++.+.+.+.+ +..++||+|||+|.+. . +...+|..+ ..++.+.+ +|.||+..+
T Consensus 125 ~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l~-~~~~~~~~~~v~vI~i~~ 181 (394)
T PRK00411 125 LFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSLL-RAHEEYPGARIGVIGISS 181 (394)
T ss_pred HHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHHH-HhhhccCCCeEEEEEEEC
Confidence 45666666654 3578999999999976 2 234455444 44555555 676666665
No 396
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.02 E-value=0.012 Score=69.06 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=45.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC-ccc---------cccccchHHHHHHHHHHHHhcCCeEEEEc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 1025 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg----~~fi~v~~s-~L~---------s~~~Ge~e~~I~~lF~~A~k~~PsILfID 1025 (1226)
..+||.||+|+|||+++++++.++. ..++.+.-+ ++. ....|.........+..+.+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4589999999999999999988764 233333211 111 11122222234566677778899999999
Q ss_pred ccc
Q 000914 1026 EVD 1028 (1226)
Q Consensus 1026 EID 1028 (1226)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 993
No 397
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.01 E-value=0.02 Score=66.16 Aligned_cols=69 Identities=25% Similarity=0.386 Sum_probs=46.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecC-ccc-------cccccchHHHHHHHHHHHHhcCCeEEEEcc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-------SKWFGEGEKYVKAVFSLASKIAPSVVFVDE 1026 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg-----~~fi~v~~s-~L~-------s~~~Ge~e~~I~~lF~~A~k~~PsILfIDE 1026 (1226)
.++|+.|++|+|||+++++++.... ..++.+.-. ++. .-..+.....+..++..+.+..|.+|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5799999999999999999998862 333333221 110 000111112567788888899999999999
Q ss_pred cc
Q 000914 1027 VD 1028 (1226)
Q Consensus 1027 ID 1028 (1226)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 93
No 398
>PRK08233 hypothetical protein; Provisional
Probab=96.01 E-value=0.034 Score=58.39 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAG-ANFINIS 991 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg-~~fi~v~ 991 (1226)
.-|.|.|+||+||||+|+.|+..++ ..++.++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3478899999999999999999985 4444444
No 399
>PRK10436 hypothetical protein; Provisional
Probab=95.96 E-value=0.025 Score=68.97 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=61.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-cc
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 995 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~v~~s-~L 995 (1226)
..++++++-.....+.+++.+.. +..-||++||+|+|||++..++..++. .+++.+--+ ++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 34778888888888888776642 223489999999999999888777763 334443321 11
Q ss_pred -----ccccccc-hHHHHHHHHHHHHhcCCeEEEEcccc
Q 000914 996 -----TSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1028 (1226)
Q Consensus 996 -----~s~~~Ge-~e~~I~~lF~~A~k~~PsILfIDEID 1028 (1226)
....++. .......++..+.++.|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1101111 11235566677788999999999994
No 400
>PRK06762 hypothetical protein; Provisional
Probab=95.96 E-value=0.016 Score=60.32 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 995 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L 995 (1226)
.-|+|+|+||+|||++|+.+++.++..++.++...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 458999999999999999999999666666665444
No 401
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.96 E-value=0.11 Score=60.95 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=48.2
Q ss_pred HHHhhhCCCeEEecCCch-hHHHHHHHHHHhh--hh---------hhhhcccchhHHHHHhhhCCCCcccchhhh---cc
Q 000914 770 KQISRLFPNKVTIQLPQD-EALLSDWKQQLER--DV---------ETLKGQSNIISIRSVLSRNGLDCVDLESLC---IK 834 (1226)
Q Consensus 770 ~~l~~lf~~~i~i~~P~D-eALLRrw~~qLe~--dL---------pdlk~R~nIl~IhT~L~~n~l~~~dL~~La---~~ 834 (1226)
+++..+|.-.|.+..|.+ +..+....+.... +. +.......|...+..+..-.+++..++.++ ..
T Consensus 187 ~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~ 266 (334)
T PRK13407 187 PQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIA 266 (334)
T ss_pred HHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHH
Confidence 667888999999998877 3433322221111 11 122334567777666666666665555433 33
Q ss_pred cCC-CCHHHHHHHHhhhhhccccc
Q 000914 835 DQT-LTTEGVEKIVGWALSHHFMH 857 (1226)
Q Consensus 835 tkg-~sgadI~~Lv~~A~s~al~r 857 (1226)
+.. =.-++|. +++.|..+|+..
T Consensus 267 ~~~~s~Ra~i~-l~~aA~a~A~l~ 289 (334)
T PRK13407 267 LGSDGLRGELT-LLRAARALAAFE 289 (334)
T ss_pred HCCCCchHHHH-HHHHHHHHHHHc
Confidence 321 1234454 777787777763
No 402
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.95 E-value=0.035 Score=69.46 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=48.1
Q ss_pred CeEEEEcChhhhhcc---ChhhHHHHHHHHhcCCCCEEEEEeccCCCCccccCCCCCceeeccCcchhhhhcccCCCCcc
Q 000914 680 PLIVFVKDIEKSLTG---NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFS 756 (1226)
Q Consensus 680 P~Ilfi~die~~l~~---~~~~~~~l~~~L~~l~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~ 756 (1226)
+-+|+|||++.+... +.++|+.|....++ +.-|||.|+. .|..+.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--gk~IIITSd~------------------------------~P~eL~ 425 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--NKQIVLSSDR------------------------------PPKQLV 425 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhc--CCCEEEecCC------------------------------ChHhhh
Confidence 458999999985442 46788877776653 4456666665 232222
Q ss_pred ccccccccchHHHHHHhhhC--CCeEEecCCchhHHHHHHHH
Q 000914 757 RLHDRSKETPKALKQISRLF--PNKVTIQLPQDEALLSDWKQ 796 (1226)
Q Consensus 757 ~~~~~~~~~~~~~~~l~~lf--~~~i~i~~P~DeALLRrw~~ 796 (1226)
.+ .+.|..+| +..+.|..|++|.++....+
T Consensus 426 ~l----------~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 426 TL----------EDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred hc----------cHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 11 24566677 55668999999988665543
No 403
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.95 E-value=0.064 Score=62.97 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=44.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 000914 925 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 994 (1226)
Q Consensus 925 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~ 994 (1226)
.+.+.+.++..|..++-. .. ..-|..|.|+|..|||||++.+.+.+.++.+.+.++|-+
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 345667777777776531 11 123456899999999999999999999999998888754
No 404
>PRK14531 adenylate kinase; Provisional
Probab=95.94 E-value=0.0074 Score=64.37 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
..|+|+||||+|||++++.||..+|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999999877553
No 405
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.22 Score=55.85 Aligned_cols=133 Identities=11% Similarity=0.051 Sum_probs=89.5
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHHhCCc---------EEEEecCccc---cccccchHHHHHHHHHHHHh----cCCeE
Q 000914 959 CKGILLFGPPG-TGKTMLAKAVATEAGAN---------FINISMSSIT---SKWFGEGEKYVKAVFSLASK----IAPSV 1021 (1226)
Q Consensus 959 ~~gVLL~GPPG-TGKT~LArAIA~elg~~---------fi~v~~s~L~---s~~~Ge~e~~I~~lF~~A~k----~~PsI 1021 (1226)
....||.|..+ +||..++.-+++.+-+. ++.+....-. +.. -.-..+|.+-..+.. ...-|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~--I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKN--ISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCc--ccHHHHHHHHHHHhhCcccCCcEE
Confidence 35799999998 99999998888777332 3333221100 011 123345555554433 23469
Q ss_pred EEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHH
Q 000914 1022 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREK 1101 (1226)
Q Consensus 1022 LfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l~lPd~eeR~e 1101 (1226)
++|+++|.|. ....+.|+..++. ++.++++|..|..+..+.+.+++|+ ..+.+..|....-.+
T Consensus 93 iII~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 93 AIIYSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred EEEechHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHH
Confidence 9999999982 2344556666554 3466888888888999999999999 789999999887777
Q ss_pred HHHHHHhhc
Q 000914 1102 IIRVILAKE 1110 (1226)
Q Consensus 1102 ILk~lL~k~ 1110 (1226)
+...++...
T Consensus 156 ~~~~~~~p~ 164 (263)
T PRK06581 156 LYSQFIQPI 164 (263)
T ss_pred HHHHhcccc
Confidence 777766543
No 406
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.91 E-value=0.0066 Score=64.47 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
|+|+|+||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998776554
No 407
>PRK09354 recA recombinase A; Provisional
Probab=95.91 E-value=0.04 Score=64.84 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=49.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc----------------cccccchHHHHHHHHHHHHhcCCe
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------------SKWFGEGEKYVKAVFSLASKIAPS 1020 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~----------------s~~~Ge~e~~I~~lF~~A~k~~Ps 1020 (1226)
+-++|+||+|+|||+|+-.++... |...++++...-. -......+..+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 458999999999999999876443 6677777764411 001122344444444445566789
Q ss_pred EEEEcccccccc
Q 000914 1021 VVFVDEVDSMLG 1032 (1226)
Q Consensus 1021 ILfIDEID~L~~ 1032 (1226)
+|+||-|-.|.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999999875
No 408
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.89 E-value=0.32 Score=56.64 Aligned_cols=127 Identities=19% Similarity=0.177 Sum_probs=66.8
Q ss_pred HHHHHHHHHhc---CCeEEEEccccccccCCCC-----CchHHHHHHHHHhhhhhccCCcccCCCcEE-EEEecCC---C
Q 000914 1007 VKAVFSLASKI---APSVVFVDEVDSMLGRREN-----PGEHEAMRKMKNEFMVNWDGLRTKDKERVL-VLAATNR---P 1074 (1226)
Q Consensus 1007 I~~lF~~A~k~---~PsILfIDEID~L~~~r~~-----~~~~e~l~~vl~~Ll~~ldgl~~k~~~~Vl-VIaTTN~---p 1074 (1226)
+..++.+.... .|.++-||++..|+....- ...+..-..+...|+..+.+-..-.++.++ .+++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 33444444332 4678889999999965311 111222334555565554443332233332 2555532 2
Q ss_pred C--CCcHHHHhhcc---------------------ccccCCCCCHHHHHHHHHHHHhhcccCC----hhcHHHHHHHcCC
Q 000914 1075 F--DLDEAVVRRLP---------------------RRLMVNLPDAPNREKIIRVILAKEELAS----DVDLEGIANMADG 1127 (1226)
Q Consensus 1075 ~--~Ld~aLlrRF~---------------------~~I~l~lPd~eeR~eILk~lL~k~~l~~----dvdl~~LA~~TeG 1127 (1226)
. .++.++..+=. ..|.++..+.+|-..+++.+....-+.. ..-.+.+...+.
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~- 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN- 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-
Confidence 2 45555554321 1577888889999999999877644332 222344444444
Q ss_pred CcHHHHH
Q 000914 1128 YSGSDLK 1134 (1226)
Q Consensus 1128 ySgsDL~ 1134 (1226)
.+++++.
T Consensus 301 GNp~el~ 307 (309)
T PF10236_consen 301 GNPRELE 307 (309)
T ss_pred CCHHHhc
Confidence 3555553
No 409
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.88 E-value=0.0073 Score=60.93 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
|+|.|+||+|||++|+.||..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 410
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.85 E-value=0.015 Score=56.48 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000914 961 GILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~el 983 (1226)
+++|+||+|+|||+++..++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888877666
No 411
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.84 E-value=0.0076 Score=61.64 Aligned_cols=28 Identities=43% Similarity=0.782 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAGANFIN 989 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg~~fi~ 989 (1226)
++|+|+||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 412
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.83 E-value=0.016 Score=63.14 Aligned_cols=111 Identities=22% Similarity=0.294 Sum_probs=60.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1039 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1039 (1226)
.-++|.|+.|+|||++.+.|+.+. +.-+ +.. ... .... ..+... -||.|||++.+. ...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~---~~~--~~~-kd~~---~~l~~~---~iveldEl~~~~-----k~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDS---IND--FDD-KDFL---EQLQGK---WIVELDELDGLS-----KKD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCc---ccc--CCC-cHHH---HHHHHh---HheeHHHHhhcc-----hhh
Confidence 458999999999999999997662 1111 110 011 1111 111111 588999999873 222
Q ss_pred HHHHHHHHHhhhhhccCC----cccCCCcEEEEEecCCCCCCc-HHHHhhccccccCC
Q 000914 1040 HEAMRKMKNEFMVNWDGL----RTKDKERVLVLAATNRPFDLD-EAVVRRLPRRLMVN 1092 (1226)
Q Consensus 1040 ~e~l~~vl~~Ll~~ldgl----~~k~~~~VlVIaTTN~p~~Ld-~aLlrRF~~~I~l~ 1092 (1226)
.+.+..++..-...++.. ....+....+|||||..+-|. +.--||| ..|.+.
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~ 168 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVS 168 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEc
Confidence 334443333322222211 112245678999999987554 3455687 444444
No 413
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.83 E-value=0.14 Score=62.96 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=38.7
Q ss_pred cccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCC
Q 000914 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (1226)
Q Consensus 452 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a 520 (1226)
+|+++-+. ++.+..|..++-.+ . ....+||+|||| +++++||+++|+.+..
T Consensus 12 ~~~divGq--~~i~~~L~~~i~~~----~----------l~~~~Lf~GPpG--tGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 12 TFSEVVGQ--DHVKKLIINALKKN----S----------ISHAYIFAGPRG--TGKTTVARILAKSLNC 62 (472)
T ss_pred CHHHccCc--HHHHHHHHHHHHcC----C----------CCeEEEEECCCC--CCHHHHHHHHHHHhcc
Confidence 57776666 88888887654311 1 234589999999 9999999999999765
No 414
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.82 E-value=0.072 Score=59.99 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 992 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~v~~ 992 (1226)
+..-++|.|+||+|||+++..++..+ +..++.++.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44568999999999999999887664 666666665
No 415
>PRK14530 adenylate kinase; Provisional
Probab=95.81 E-value=0.0086 Score=65.47 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
.|+|.||||+|||++|+.||+.++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999877744
No 416
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.81 E-value=0.063 Score=59.02 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 000914 960 KGILLFGPPGTGKTMLAKAVAT 981 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~ 981 (1226)
+.++|+||.|+|||++.+.|+.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 417
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.81 E-value=0.051 Score=59.07 Aligned_cols=108 Identities=24% Similarity=0.312 Sum_probs=55.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-------------------ccc-chHHHHHHHHHHHH
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-------------------WFG-EGEKYVKAVFSLAS 1015 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~-------------------~~G-e~e~~I~~lF~~A~ 1015 (1226)
|+-++|.||+|+|||+.+..+|.++ +..+--+++...... ... .....++..++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3568999999999999998888776 444333333221000 001 12223444555554
Q ss_pred hcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc
Q 000914 1016 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1078 (1226)
Q Consensus 1016 k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1078 (1226)
...-.+||||=..+. +...+.+.++ ..++..+. ....++|+.++...+.+.
T Consensus 81 ~~~~D~vlIDT~Gr~------~~d~~~~~el-~~~~~~~~-----~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS------PRDEELLEEL-KKLLEALN-----PDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS------STHHHHHHHH-HHHHHHHS-----SSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc------hhhHHHHHHH-HHHhhhcC-----CccceEEEecccChHHHH
Confidence 444579999987543 2222222222 22332221 224466666666655555
No 418
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.80 E-value=0.1 Score=58.53 Aligned_cols=132 Identities=15% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCcccccc--------c-c-----chHHHHHH----HHHHHH--
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSKW--------F-G-----EGEKYVKA----VFSLAS-- 1015 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~elg~--~fi~v~~s~L~s~~--------~-G-----e~e~~I~~----lF~~A~-- 1015 (1226)
.+-.+++.|++|+|||+|+..|...+.. ..+.+-++.....+ + . +.+..+.. +-..+.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3457999999999999999999877743 33333332211111 0 0 00111111 111111
Q ss_pred -h---cCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCcHHHHhhccccccC
Q 000914 1016 -K---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 1091 (1226)
Q Consensus 1016 -k---~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~l 1091 (1226)
. ..+.+|+||++..- ..-.+.+..+... ...-++.+|..+-....|++.++.-.+..+.+
T Consensus 92 ~~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~------gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~ 155 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK----------KLKSKILRQFFNN------GRHYNISIIFLSQSYFHLPPNIRSNIDYFIIF 155 (241)
T ss_pred cccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc------ccccceEEEEEeeecccCCHHHhhcceEEEEe
Confidence 1 22579999997421 0112233444322 13456888888888889999987766655655
Q ss_pred CCCCHHHHHHHHHHH
Q 000914 1092 NLPDAPNREKIIRVI 1106 (1226)
Q Consensus 1092 ~lPd~eeR~eILk~l 1106 (1226)
. -+..+...|++.+
T Consensus 156 ~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 156 N-NSKRDLENIYRNM 169 (241)
T ss_pred c-CcHHHHHHHHHhc
Confidence 4 3555555554444
No 419
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.79 E-value=0.042 Score=60.06 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEecCc
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 994 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g------~~fi~v~~s~ 994 (1226)
+..-+.|+||||+|||+|+..+|... + ..+++++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 33558999999999999999998664 3 5667777644
No 420
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.77 E-value=0.027 Score=66.05 Aligned_cols=69 Identities=23% Similarity=0.346 Sum_probs=47.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-Ccccc-----------cc--ccchHHHHHHHHHHHHhcCCeEEE
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-SSITS-----------KW--FGEGEKYVKAVFSLASKIAPSVVF 1023 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~--~fi~v~~-s~L~s-----------~~--~Ge~e~~I~~lF~~A~k~~PsILf 1023 (1226)
.+||+.|++|+|||+++++++..... .++.+.- .++.- .. .+...-....++..+.+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 57999999999999999999988742 3333211 11110 00 111222456788889999999999
Q ss_pred Ecccc
Q 000914 1024 VDEVD 1028 (1226)
Q Consensus 1024 IDEID 1028 (1226)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99994
No 421
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.76 E-value=0.0077 Score=63.98 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
++|+|.|++|+|||++.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998877
No 422
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.74 E-value=0.031 Score=69.97 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=62.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC---
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS--- 993 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~v~~s--- 993 (1226)
..++++++-..+..+.+.+++.. +..-||++||+|+|||++..++..+++ .+++.+--+
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35678888888888888876652 223489999999999999988887774 234433221
Q ss_pred ---cccccccc-chHHHHHHHHHHHHhcCCeEEEEcccc
Q 000914 994 ---SITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1028 (1226)
Q Consensus 994 ---~L~s~~~G-e~e~~I~~lF~~A~k~~PsILfIDEID 1028 (1226)
.+....+. ........++..+.++.|.||+|.||-
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 11111111 111234556777788999999999994
No 423
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.68 E-value=0.12 Score=63.77 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=40.0
Q ss_pred cccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeE
Q 000914 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1226)
Q Consensus 452 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~l 522 (1226)
+|+++... ++....|..+..- ....+.+||+||+| ++++++|++||+.+...-
T Consensus 19 ~f~dliGq--~~vv~~L~~ai~~--------------~ri~~a~Lf~Gp~G--~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 19 NFAELQGQ--EVLVKVLSYTILN--------------DRLAGGYLLTGIRG--VGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CHHHhcCc--HHHHHHHHHHHHc--------------CCCCceEEEECCCC--CCHHHHHHHHHHHhcCcc
Confidence 57776666 7777777665421 12256799999999 999999999999998754
No 424
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.66 E-value=0.01 Score=66.01 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
..|+|.||||+|||++|+.||+.++++++.+.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 56999999999999999999999998776654
No 425
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.66 E-value=0.0085 Score=62.22 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAGANFIN 989 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg~~fi~ 989 (1226)
|+|.||+|+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999876653
No 426
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.64 E-value=0.015 Score=69.95 Aligned_cols=86 Identities=26% Similarity=0.371 Sum_probs=64.0
Q ss_pred ccCCCcccccccccccccchHHHHHHHHhhhhhcccccccccc-CCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCe
Q 000914 443 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1226)
Q Consensus 443 vv~~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~-~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~ 521 (1226)
+..|++|.-..|++ .+=-|+.|.+|..|+|-|.+.-...... .+.....+.|||.||+| .++++|||+||+.++++
T Consensus 59 ~~~p~~i~~~L~~~-ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~G--tGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 59 LPTPKEIKAHLDQY-VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTG--SGKTLLAQTLARILDVP 135 (412)
T ss_pred CCCHHHHHHHHhhH-eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCC--CCHHHHHHHHHHHhCCC
Confidence 55566666666652 1224889999999999888775332111 13444567899999999 89999999999999999
Q ss_pred EEEEeccCCC
Q 000914 522 LLIVDSLLLP 531 (1226)
Q Consensus 522 lL~~D~~~~~ 531 (1226)
+..+|.+.+.
T Consensus 136 f~~id~~~l~ 145 (412)
T PRK05342 136 FAIADATTLT 145 (412)
T ss_pred ceecchhhcc
Confidence 9999987753
No 427
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.63 E-value=0.082 Score=59.81 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 992 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~ 992 (1226)
+..-+||+|+||+|||+|+..+|.+. |-+.++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34568999999999999999987653 556655554
No 428
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.011 Score=63.26 Aligned_cols=28 Identities=46% Similarity=0.859 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFI 988 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi 988 (1226)
.|+|.||||+||||+|+.||+.++++-+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999555443
No 429
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.61 E-value=0.045 Score=60.19 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 994 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~v~~s~ 994 (1226)
+..-+.|+||||+|||+|+..++... +...+.++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 33558999999999999999997553 25677777644
No 430
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.61 E-value=0.055 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.9
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 000914 960 KGILLFGPPGTGKTM-LAKAVATEA 983 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~-LArAIA~el 983 (1226)
..++|.||+|+|||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555554
No 431
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.61 E-value=0.18 Score=60.80 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=28.6
Q ss_pred CceeecCCCChhHHHHHHHHHHHhhhCCeEEEEec
Q 000914 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1226)
Q Consensus 493 ~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~ 527 (1226)
+.|||+||+| +++++||++||+.++.++..++.
T Consensus 37 ~~ilL~GppG--tGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 37 SSMILWGPPG--TGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred ceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEec
Confidence 3699999999 89999999999998887776654
No 432
>PRK04195 replication factor C large subunit; Provisional
Probab=95.60 E-value=0.21 Score=61.57 Aligned_cols=63 Identities=22% Similarity=0.253 Sum_probs=46.2
Q ss_pred cccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEeccC
Q 000914 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1226)
Q Consensus 452 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~~ 529 (1226)
+|+++-+ .+..+..|...+--+.+. ...+.+||+|||| +++++||+|||++++..++.++.++
T Consensus 12 ~l~dlvg--~~~~~~~l~~~l~~~~~g-----------~~~~~lLL~GppG--~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 12 TLSDVVG--NEKAKEQLREWIESWLKG-----------KPKKALLLYGPPG--VGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CHHHhcC--CHHHHHHHHHHHHHHhcC-----------CCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEEcccc
Confidence 4555444 377777777765433311 1157899999999 9999999999999998888887654
No 433
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.60 E-value=0.079 Score=57.40 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000914 960 KGILLFGPPGTGKTMLAKAVA 980 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA 980 (1226)
..++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 569999999999999999998
No 434
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.59 E-value=0.01 Score=62.75 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 993 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s 993 (1226)
+-|+|.|+||+|||++|++++..++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4589999999999999999999998877766543
No 435
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.58 E-value=0.051 Score=58.18 Aligned_cols=69 Identities=30% Similarity=0.479 Sum_probs=45.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecC-cccc---cc----------ccchHHHHHHHHHHHHhcCCeEEE
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KW----------FGEGEKYVKAVFSLASKIAPSVVF 1023 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg--~~fi~v~~s-~L~s---~~----------~Ge~e~~I~~lF~~A~k~~PsILf 1023 (1226)
..++|.||+|+|||+++++++.... ...+.+... ++.. .+ .+........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998763 222322211 1100 00 011123456677778888999999
Q ss_pred Ecccc
Q 000914 1024 VDEVD 1028 (1226)
Q Consensus 1024 IDEID 1028 (1226)
+.|+-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99993
No 436
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.57 E-value=0.013 Score=61.42 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
..++|.|.+|+|||++++.+|..++++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999988664
No 437
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.55 E-value=0.055 Score=65.81 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=41.7
Q ss_pred CCcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhh-----CC
Q 000914 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF-----SA 520 (1226)
Q Consensus 446 ~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f-----~a 520 (1226)
+-+-..|||||= ..+..+.+...|.-+. ..+ .. ...++|+||+| .+++.|+.|+|+++ ++
T Consensus 97 ~l~~~~tFdnFv--~g~~n~~a~~~~~~~~-~~~---------~~-~n~l~lyG~~G--~GKTHLl~ai~~~l~~~~~~~ 161 (440)
T PRK14088 97 PLNPDYTFENFV--VGPGNSFAYHAALEVA-KNP---------GR-YNPLFIYGGVG--LGKTHLLQSIGNYVVQNEPDL 161 (440)
T ss_pred CCCCCCcccccc--cCCchHHHHHHHHHHH-hCc---------CC-CCeEEEEcCCC--CcHHHHHHHHHHHHHHhCCCC
Confidence 345678999964 4455554443332221 111 11 23499999999 99999999999985 44
Q ss_pred eEEEEec
Q 000914 521 RLLIVDS 527 (1226)
Q Consensus 521 ~lL~~D~ 527 (1226)
+.+-+++
T Consensus 162 ~v~yi~~ 168 (440)
T PRK14088 162 RVMYITS 168 (440)
T ss_pred eEEEEEH
Confidence 5555544
No 438
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.51 E-value=0.033 Score=57.69 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 000914 962 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 994 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~ 994 (1226)
++|.|+||+|||++|+.++..+ +...+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 7899999999999999999998 66677776543
No 439
>PF13479 AAA_24: AAA domain
Probab=95.51 E-value=0.048 Score=59.80 Aligned_cols=20 Identities=55% Similarity=1.052 Sum_probs=18.6
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 000914 960 KGILLFGPPGTGKTMLAKAV 979 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAI 979 (1226)
-.+||||+||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46999999999999999988
No 440
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.50 E-value=0.04 Score=58.34 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 000914 957 KPCKGILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 957 kP~~gVLL~GPPGTGKT~LArAIA~el 983 (1226)
.+...++|+||+|+||++|.+++|.-.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 344669999999999999999999765
No 441
>PRK06547 hypothetical protein; Provisional
Probab=95.48 E-value=0.014 Score=62.08 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
++.-|+|.|++|+|||++|+.|++.++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 4467899999999999999999999988777654
No 442
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.47 E-value=0.014 Score=61.68 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
.-|+|.||||+|||++++.|+..+|+.++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3589999999999999999999998765443
No 443
>PRK13946 shikimate kinase; Provisional
Probab=95.46 E-value=0.012 Score=62.80 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
+.|+|.|.+|+|||++++.||+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999998766
No 444
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.46 E-value=2.3 Score=51.41 Aligned_cols=205 Identities=23% Similarity=0.251 Sum_probs=113.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc---------------ccccccc-----hHHHHHHHHH
Q 000914 956 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI---------------TSKWFGE-----GEKYVKAVFS 1012 (1226)
Q Consensus 956 ~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L---------------~s~~~Ge-----~e~~I~~lF~ 1012 (1226)
.+||.-||+.|-.|+||||.+-.+|.++ +..+..+.|... --.+++. .....+....
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 3466789999999999999999999888 555555554321 1112222 2335677888
Q ss_pred HHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCCc--HHHHhhccc-cc
Q 000914 1013 LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD--EAVVRRLPR-RL 1089 (1226)
Q Consensus 1013 ~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld--~aLlrRF~~-~I 1089 (1226)
.|+...-.||++|=..++- .+ ..+++++...-+-+.+ ..-++|+=++--.+..+ .+|-.+.+. -+
T Consensus 177 ~ak~~~~DvvIvDTAGRl~------id----e~Lm~El~~Ik~~~~P--~E~llVvDam~GQdA~~~A~aF~e~l~itGv 244 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLH------ID----EELMDELKEIKEVINP--DETLLVVDAMIGQDAVNTAKAFNEALGITGV 244 (451)
T ss_pred HHHHcCCCEEEEeCCCccc------cc----HHHHHHHHHHHhhcCC--CeEEEEEecccchHHHHHHHHHhhhcCCceE
Confidence 8888888999999998772 11 2344444433333332 24455554443333222 333333321 13
Q ss_pred cCCCCCHHHHHHH---HHHHHhh--------ccc--CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000914 1090 MVNLPDAPNREKI---IRVILAK--------EEL--ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1156 (1226)
Q Consensus 1090 ~l~lPd~eeR~eI---Lk~lL~k--------~~l--~~dvdl~~LA~~TeGySgsDL~~L~~~Aa~~aireli~~~~~ek 1156 (1226)
.+.-.|-+.|--- +++.+.. +.+ .+..+.+.+|.+.-|. +|+..|++.|....-.+-. ++...
T Consensus 245 IlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGM--GDv~sLvEk~~~~~d~e~a--~~~~~ 320 (451)
T COG0541 245 ILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGM--GDVLSLIEKAEEVVDEEEA--EKLAE 320 (451)
T ss_pred EEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCc--ccHHHHHHHHHHhhhHHHH--HHHHH
Confidence 3444555544221 2222221 111 2445678888887553 7999999988654322111 11111
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000914 1157 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1191 (1226)
Q Consensus 1157 ~~~~~e~~~~~~~~~~~d~r~Lt~eDF~~Al~~v~ 1191 (1226)
... .-..+.+||.+-+++++
T Consensus 321 --kl~-------------~g~FtL~Df~~Ql~~m~ 340 (451)
T COG0541 321 --KLK-------------KGKFTLEDFLEQLEQMK 340 (451)
T ss_pred --HHH-------------hCCCCHHHHHHHHHHHH
Confidence 110 12378899998888765
No 445
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.46 E-value=0.35 Score=57.54 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=35.6
Q ss_pred cccCCCCCHHHHHHHHHHHHhhccc----CChhcHHHHHHHcCCCcHHHHHHHHH
Q 000914 1088 RLMVNLPDAPNREKIIRVILAKEEL----ASDVDLEGIANMADGYSGSDLKNLCV 1138 (1226)
Q Consensus 1088 ~I~l~lPd~eeR~eILk~lL~k~~l----~~dvdl~~LA~~TeGySgsDL~~L~~ 1138 (1226)
.|+++..+.+|-..++.+++...-+ ..+..++.+--+. +.+++.++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 4778888999999999999887433 3344566666666 456777777764
No 446
>PRK14528 adenylate kinase; Provisional
Probab=95.45 E-value=0.014 Score=62.72 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
+.|+|.||||+|||++|+.|+..++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4699999999999999999999999877654
No 447
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.44 E-value=0.091 Score=56.87 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000914 960 KGILLFGPPGTGKTMLAKAVA 980 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA 980 (1226)
+.++|+||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 459999999999999999998
No 448
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.44 E-value=0.13 Score=65.50 Aligned_cols=158 Identities=23% Similarity=0.332 Sum_probs=89.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCc--EEEEecCcc-----ccc-------c---ccc-------------hHHHH
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA--GAN--FINISMSSI-----TSK-------W---FGE-------------GEKYV 1007 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el--g~~--fi~v~~s~L-----~s~-------~---~Ge-------------~e~~I 1007 (1226)
+-+||.-|.|.|||+++...+..+ +.. ++.++-++- .+. + .++ .+..+
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 569999999999999999997633 334 444444331 000 0 111 11234
Q ss_pred HHHHH-HHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCC-C-CCCcHHHHhh
Q 000914 1008 KAVFS-LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-P-FDLDEAVVRR 1084 (1226)
Q Consensus 1008 ~~lF~-~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~-p-~~Ld~aLlrR 1084 (1226)
..+|. .+....|.+||||+.+.+- ++..++.++.+++ . .+.++.+|.+|.. | ..+..--++
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~----~~~l~~~l~fLl~----~-------~P~~l~lvv~SR~rP~l~la~lRlr- 181 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLIS----DPALHEALRFLLK----H-------APENLTLVVTSRSRPQLGLARLRLR- 181 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccC----cccHHHHHHHHHH----h-------CCCCeEEEEEeccCCCCcccceeeh-
Confidence 44454 4566679999999999872 3333444443333 2 2356777777743 3 222211111
Q ss_pred ccccccCC----CCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHH-HHHHH
Q 000914 1085 LPRRLMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS-DLKNL 1136 (1226)
Q Consensus 1085 F~~~I~l~----lPd~eeR~eILk~lL~k~~l~~dvdl~~LA~~TeGySgs-DL~~L 1136 (1226)
+..++|. ..+.+|-.++++..... -.+..++..|-..++|+..+ .|..|
T Consensus 182 -~~llEi~~~~Lrf~~eE~~~fl~~~~~l--~Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 182 -DELLEIGSEELRFDTEEAAAFLNDRGSL--PLDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred -hhHHhcChHhhcCChHHHHHHHHHcCCC--CCChHHHHHHHhhcccHHHHHHHHHH
Confidence 1123332 24677777777765422 12566788899999998543 34333
No 449
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.42 E-value=0.015 Score=61.69 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 992 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~ 992 (1226)
..|+|.|++|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999887764
No 450
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.067 Score=58.25 Aligned_cols=24 Identities=50% Similarity=0.672 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAG 984 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg 984 (1226)
=|+|+|+||+|||++|+.+|+.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 389999999999999999999983
No 451
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.40 E-value=0.024 Score=65.67 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=32.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 956 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 956 ~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
..+...|+|+|.+|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 456678999999999999999999999999999544
No 452
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.39 E-value=0.052 Score=63.35 Aligned_cols=69 Identities=25% Similarity=0.414 Sum_probs=46.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec-Cccc---cc---cccchHHHHHHHHHHHHhcCCeEEEEccc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISM-SSIT---SK---WFGEGEKYVKAVFSLASKIAPSVVFVDEV 1027 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v~~-s~L~---s~---~~Ge~e~~I~~lF~~A~k~~PsILfIDEI 1027 (1226)
.++|+.|++|+|||+++++++.+. ...++.+.- .++. .. +....+-.+..++..+.+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 579999999999999999999864 122332221 1111 00 11111234677888899999999999999
Q ss_pred c
Q 000914 1028 D 1028 (1226)
Q Consensus 1028 D 1028 (1226)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 3
No 453
>PRK02496 adk adenylate kinase; Provisional
Probab=95.36 E-value=0.015 Score=61.80 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
.++|.||||+|||++|+.||..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999999999876654
No 454
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.36 E-value=0.053 Score=63.31 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=46.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cCcccc------ccccchHHHHHHHHHHHHhcCCeEEEEccc
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSITS------KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 1027 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v~-~s~L~s------~~~Ge~e~~I~~lF~~A~k~~PsILfIDEI 1027 (1226)
.++|+.|++|+|||+++++++... +..++.+. ..++.- .+.....-....++..+.+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 579999999999999999999876 22333332 112110 011111224667788888999999999999
Q ss_pred c
Q 000914 1028 D 1028 (1226)
Q Consensus 1028 D 1028 (1226)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 3
No 455
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.35 E-value=0.26 Score=57.62 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 992 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~ 992 (1226)
++.-++|.||+|+|||+++..+|..+ +..+.-+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34668999999999999999999877 445555554
No 456
>PLN02200 adenylate kinase family protein
Probab=95.35 E-value=0.017 Score=64.41 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~ 996 (1226)
.+.-|+|.|+||+|||++|+.||..+|+. .+++.++.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 34568999999999999999999999875 45655554
No 457
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.31 E-value=0.037 Score=65.17 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000914 961 GILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~el 983 (1226)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 458
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.27 E-value=0.016 Score=63.20 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
|+|+||||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998777654
No 459
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.26 E-value=0.069 Score=55.98 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=43.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCcccc--------ccccc-----hHHHHHHHHHHHHhcCCeE
Q 000914 957 KPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITS--------KWFGE-----GEKYVKAVFSLASKIAPSV 1021 (1226)
Q Consensus 957 kP~~gVLL~GPPGTGKT~LArAIA~elg~--~fi~v~~s~L~s--------~~~Ge-----~e~~I~~lF~~A~k~~PsI 1021 (1226)
.+...+.|.||+|+|||+|.+.|+..... --+.++...+.. ..++. .-..-+-.+..|--..|.|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 34467999999999999999999876521 112232211110 00100 1112333455666678999
Q ss_pred EEEccccc
Q 000914 1022 VFVDEVDS 1029 (1226)
Q Consensus 1022 LfIDEID~ 1029 (1226)
|++||--.
T Consensus 104 lllDEP~~ 111 (163)
T cd03216 104 LILDEPTA 111 (163)
T ss_pred EEEECCCc
Confidence 99999853
No 460
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.24 E-value=0.014 Score=57.13 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 000914 962 ILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~el 983 (1226)
|+|.|+||+|||++|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 461
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.24 E-value=0.14 Score=54.92 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 000914 962 ILLFGPPGTGKTMLAKAVA 980 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA 980 (1226)
++|+||.|.|||++.+.|+
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 462
>PRK04328 hypothetical protein; Provisional
Probab=95.24 E-value=0.14 Score=57.47 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=27.3
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000914 953 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 992 (1226)
Q Consensus 953 ~~l~kP~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~ 992 (1226)
+|+ .+...+||+|+||+|||+|+..++.+. |-+.+.++.
T Consensus 18 GGi-p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 18 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCC-cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 443 344669999999999999998876542 445555543
No 463
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.15 Score=60.91 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=43.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----c---c---------ccchHHHHHHHHHHHHh-cC
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----K---W---------FGEGEKYVKAVFSLASK-IA 1018 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s----~---~---------~Ge~e~~I~~lF~~A~k-~~ 1018 (1226)
++.|+|.||+|+|||+++..||..+ +..+..+++..... . | .......+...+..+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3679999999999999999999776 44454455432110 0 0 01223334444444432 23
Q ss_pred CeEEEEcccccc
Q 000914 1019 PSVVFVDEVDSM 1030 (1226)
Q Consensus 1019 PsILfIDEID~L 1030 (1226)
-.+||||-..+.
T Consensus 321 ~DvVLIDTaGRs 332 (436)
T PRK11889 321 VDYILIDTAGKN 332 (436)
T ss_pred CCEEEEeCcccc
Confidence 478888887654
No 464
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.23 E-value=0.037 Score=61.94 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc
Q 000914 962 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 995 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L 995 (1226)
|+|+|+||+|||++|++++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 466777765433
No 465
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.22 E-value=0.018 Score=63.00 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
.|+|+||||+|||++|+.||..+++.++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999766653
No 466
>PTZ00202 tuzin; Provisional
Probab=95.22 E-value=0.47 Score=57.36 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=45.8
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 000914 923 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 993 (1226)
Q Consensus 923 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s 993 (1226)
..++.|.+.....|.+.+.. .... .+.-++|+|++|+|||+|++.++..++...+.++..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~----------~d~~-~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRR----------LDTA-HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhc----------cCCC-CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34789999999999887752 1111 224679999999999999999999998766666654
No 467
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.13 Score=61.22 Aligned_cols=95 Identities=23% Similarity=0.398 Sum_probs=66.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCccccc------ccc--------chHHHHHHHHHHHHhcCCeE
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAPSV 1021 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el--g~~fi~v~~s~L~s~------~~G--------e~e~~I~~lF~~A~k~~PsI 1021 (1226)
|..-+||-|.||.|||+|.-.++..+ ..++++++..+-... ..+ -.|..+..++..+...+|.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~l 171 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDL 171 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCE
Confidence 44569999999999999888877666 237888987662111 111 24567888899999999999
Q ss_pred EEEccccccccCCC--CCchHHHHHHHHHhhhh
Q 000914 1022 VFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMV 1052 (1226)
Q Consensus 1022 LfIDEID~L~~~r~--~~~~~e~l~~vl~~Ll~ 1052 (1226)
++||-|..++...- .++.-...+....+|+.
T Consensus 172 vVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~ 204 (456)
T COG1066 172 VVIDSIQTLYSEEITSAPGSVSQVREVAAELMR 204 (456)
T ss_pred EEEeccceeecccccCCCCcHHHHHHHHHHHHH
Confidence 99999999986542 23433444555555543
No 468
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.018 Score=60.49 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFIN 989 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~ 989 (1226)
-|-|.||||||||++|+.||.++|.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 36789999999999999999999999875
No 469
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.14 E-value=0.047 Score=69.87 Aligned_cols=95 Identities=24% Similarity=0.381 Sum_probs=72.9
Q ss_pred eeecccC--CCCceeEe---cceEEEec---cCccceEecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeec
Q 000914 136 RLISQCS--QNSHLSMT---GAVFTVGH---NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVH 207 (1226)
Q Consensus 136 ~L~s~~~--~~p~~~i~---~~~~t~G~---~~~cd~~~~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~ 207 (1226)
-|+-++. .-..+.++ .-+=+||| +..-|+.|.++.|---||.|+.. +|.-|+.|+--..--| |||||.|
T Consensus 456 hLVNLneDPllSe~LlY~ikeG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~--~g~~~vtl~p~e~aet-yVNGk~v 532 (1221)
T KOG0245|consen 456 HLVNLNEDPLLSECLLYYIKEGETRVGREDASSRQDIVLSGQLIREQHCSIRNE--GGNDVVTLEPCEDAET-YVNGKLV 532 (1221)
T ss_pred ceeccCCCchhhccEEEEeccCceecCCCCcccCCceEecchhhhhhceEEEec--CCCceEEeccCCccce-eEccEEc
Confidence 4555542 23344444 56778995 34559999999999999999986 4444788888777766 9999999
Q ss_pred CCCceEEeeCCCEEEEccCCCeeEEeeecC
Q 000914 208 PKDSQVVLRGGDELVFSPSGKHSYIFQQLS 237 (1226)
Q Consensus 208 ~k~~~~~L~~gdei~f~~~~~~ayifq~l~ 237 (1226)
.- ...|+.||.|+|+ ++|.|.|-+..
T Consensus 533 ~e--p~qL~~GdRiilG--~~H~frfn~P~ 558 (1221)
T KOG0245|consen 533 TE--PTQLRSGDRIILG--GNHVFRFNHPE 558 (1221)
T ss_pred CC--cceeccCCEEEEc--CceeEEecCHH
Confidence 87 5789999999995 68999998874
No 470
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.13 E-value=0.47 Score=54.25 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 993 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s 993 (1226)
+++-++|.||+|+|||+++..+|..+ +..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44678999999999999999998776 5556555543
No 471
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.13 E-value=0.049 Score=62.24 Aligned_cols=70 Identities=24% Similarity=0.410 Sum_probs=47.9
Q ss_pred ce-EEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC-c---------cccccccchHHHHHHHHHHHHhcCCeEEEE
Q 000914 960 KG-ILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-S---------ITSKWFGEGEKYVKAVFSLASKIAPSVVFV 1024 (1226)
Q Consensus 960 ~g-VLL~GPPGTGKT~LArAIA~elg----~~fi~v~~s-~---------L~s~~~Ge~e~~I~~lF~~A~k~~PsILfI 1024 (1226)
+| ||++||+|+|||+...++-.+.+ .+++.+.-+ + +...-+|.........+..|-+..|.||++
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlv 204 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILV 204 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEE
Confidence 45 89999999999998888888774 334443321 1 112234444445566677778889999999
Q ss_pred ccccc
Q 000914 1025 DEVDS 1029 (1226)
Q Consensus 1025 DEID~ 1029 (1226)
-|+-.
T Consensus 205 GEmRD 209 (353)
T COG2805 205 GEMRD 209 (353)
T ss_pred ecccc
Confidence 99854
No 472
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.12 E-value=0.42 Score=55.14 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=42.1
Q ss_pred cccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEeccC
Q 000914 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1226)
Q Consensus 452 sfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~~ 529 (1226)
+|+++- ..++.+..|...+- . .....-+||+||+| .++++||+|||++++..++.++...
T Consensus 19 ~~~~~~--~~~~~~~~l~~~~~----~----------~~~~~~lll~G~~G--~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 19 TIDECI--LPAADKETFKSIVK----K----------GRIPNMLLHSPSPG--TGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred cHHHhc--CcHHHHHHHHHHHh----c----------CCCCeEEEeeCcCC--CCHHHHHHHHHHHhCccceEeccCc
Confidence 566653 34777777776652 0 11234556699999 9999999999999988777776543
No 473
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.11 E-value=0.059 Score=64.37 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEAG 984 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~elg 984 (1226)
...++|.||+|+|||+|++.|++...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34699999999999999999998863
No 474
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.11 E-value=0.072 Score=56.60 Aligned_cols=74 Identities=26% Similarity=0.438 Sum_probs=42.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-------------CCcEEEEecCccc-----------ccc-------c--------
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA-------------GANFINISMSSIT-----------SKW-------F-------- 1000 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el-------------g~~fi~v~~s~L~-----------s~~-------~-------- 1000 (1226)
.-++|+||+|+|||+++..++..+ +..++.++...-. ..+ +
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 348999999999999999987655 2356667654310 000 0
Q ss_pred ---------c-chHHHHHHHHHHHHh-cCCeEEEEccccccccC
Q 000914 1001 ---------G-EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGR 1033 (1226)
Q Consensus 1001 ---------G-e~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~ 1033 (1226)
+ .....+..+...+.. ..+.+|+||.+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 0 011233445555566 57899999999999765
No 475
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.09 E-value=0.032 Score=64.63 Aligned_cols=70 Identities=23% Similarity=0.360 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEec-Ccccc---cc---------ccchHHHHHHHHHHHHhcCCeEEE
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISM-SSITS---KW---------FGEGEKYVKAVFSLASKIAPSVVF 1023 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~elg--~~fi~v~~-s~L~s---~~---------~Ge~e~~I~~lF~~A~k~~PsILf 1023 (1226)
...++|.||+|+|||+|+++++..+. ...+.+.- .++.- .+ .+...-.+..++..+.+..|.+|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 36899999999999999999997763 22222221 11100 00 011122456677788889999999
Q ss_pred Ecccc
Q 000914 1024 VDEVD 1028 (1226)
Q Consensus 1024 IDEID 1028 (1226)
+||+-
T Consensus 224 ~gE~r 228 (308)
T TIGR02788 224 LGELR 228 (308)
T ss_pred EeccC
Confidence 99994
No 476
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.05 E-value=0.18 Score=55.31 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 994 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~ 994 (1226)
+..-++|.|+||+|||+++..++.+. +-+.+.++..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 34568999999999999999887553 66666666533
No 477
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.05 E-value=0.03 Score=65.98 Aligned_cols=70 Identities=21% Similarity=0.378 Sum_probs=46.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-Ccccc----------c--cccchHHHHHHHHHHHHhcCCeEEE
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-SSITS----------K--WFGEGEKYVKAVFSLASKIAPSVVF 1023 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~elg~--~fi~v~~-s~L~s----------~--~~Ge~e~~I~~lF~~A~k~~PsILf 1023 (1226)
..+||+.||+|+|||+++++++..... .++.+.- .++.- . ..+...-....++..+.+..|..|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 367999999999999999999988732 2333221 11100 0 0011122456788888899999999
Q ss_pred Ecccc
Q 000914 1024 VDEVD 1028 (1226)
Q Consensus 1024 IDEID 1028 (1226)
+.|+-
T Consensus 242 vGEiR 246 (344)
T PRK13851 242 LGEMR 246 (344)
T ss_pred EEeeC
Confidence 99993
No 478
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.00 E-value=0.029 Score=67.43 Aligned_cols=85 Identities=28% Similarity=0.417 Sum_probs=62.2
Q ss_pred ccCCCcccccccccccccchHHHHHHHHhhhhhccccccc--ccc-CCCCCCCCceeecCCCChhHHHHHHHHHHHhhhC
Q 000914 443 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA--KYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 519 (1226)
Q Consensus 443 vv~~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~--~~~-~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~ 519 (1226)
+..|++|.-.++++ .+--|+.|..|.-|+|-|.+.-... ... .+..-....|||.||+| .++++|||+||+.++
T Consensus 65 ~~~p~~i~~~L~~~-ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G--sGKT~lAraLA~~l~ 141 (413)
T TIGR00382 65 LPTPKEIKAHLDEY-VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG--SGKTLLAQTLARILN 141 (413)
T ss_pred CCCHHHHHHHhcce-ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC--cCHHHHHHHHHHhcC
Confidence 34455555555553 2335899999999999998874321 110 11223457899999999 899999999999999
Q ss_pred CeEEEEeccCC
Q 000914 520 ARLLIVDSLLL 530 (1226)
Q Consensus 520 a~lL~~D~~~~ 530 (1226)
+++.++|.+.+
T Consensus 142 ~pf~~~da~~L 152 (413)
T TIGR00382 142 VPFAIADATTL 152 (413)
T ss_pred CCeEEechhhc
Confidence 99999998765
No 479
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.98 E-value=0.092 Score=55.16 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 000914 962 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 994 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~ 994 (1226)
+++.|+||+|||++++.+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999998776 66676666653
No 480
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.96 E-value=0.025 Score=67.28 Aligned_cols=45 Identities=36% Similarity=0.644 Sum_probs=38.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000914 920 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 983 (1226)
Q Consensus 920 ~~tfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~el 983 (1226)
..+++|.+-.+.+++.|.+.. .|||+.||||.|||++|+|+|..+
T Consensus 243 k~~ledY~L~dkl~eRL~era-------------------eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEERA-------------------EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EechhhcCCCHHHHHHHHhhh-------------------cceEEecCCCCChhHHHHHHHHHH
Confidence 457788888888988887722 589999999999999999999877
No 481
>PRK04040 adenylate kinase; Provisional
Probab=94.96 E-value=0.025 Score=60.97 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=25.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCcEE
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA--GANFI 988 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el--g~~fi 988 (1226)
+.-|+|+|+||+|||++++.++..+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3569999999999999999999999 55554
No 482
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.91 E-value=0.029 Score=67.29 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=56.8
Q ss_pred chHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHHHHHHHHhhhCCeEEEEeccCCCC-CCC
Q 000914 461 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG-GSS 535 (1226)
Q Consensus 461 se~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~~~~g-~~~ 535 (1226)
-++.|.+|..|+|-|.+...+..-.+ -.-..+.|||.||+| ..+.+|||+||+.++++++.+|.+.+.. ++.
T Consensus 20 Qe~AkkalavAl~~~~~r~~l~~~~~-~e~~~~~ILliGp~G--~GKT~LAr~LAk~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 20 QDDAKRAVAIALRNRWRRMQLPEELR-DEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccc-cccCCceEEEECCCC--CCHHHHHHHHHHHhCChheeecchhhccCCcc
Confidence 38899999999999987765542111 111237899999999 9999999999999999999999988753 454
No 483
>PRK14527 adenylate kinase; Provisional
Probab=94.91 E-value=0.022 Score=61.00 Aligned_cols=32 Identities=34% Similarity=0.616 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
+.-|+++||||+|||++|+.||..+++..+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 35699999999999999999999998765443
No 484
>PRK06696 uridine kinase; Validated
Probab=94.89 E-value=0.06 Score=59.30 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=31.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 996 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~ 996 (1226)
+.-|.|.|++|+|||+||+.|+..+ |.+++.+.+.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3568999999999999999999998 6777777766643
No 485
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.84 E-value=0.078 Score=57.36 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCccccc
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSK 998 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el-g~~fi~v~~s~L~s~ 998 (1226)
.|.-++|.|+||+|||+++..+...+ +..++.++..++...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 34679999999999999999999988 788889997776543
No 486
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.81 E-value=0.3 Score=58.95 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEA----GANFINISM 992 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~el----g~~fi~v~~ 992 (1226)
.-++|.||+|+|||+++..+|..+ |..+..+++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 458999999999999999998754 444544444
No 487
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.02 Score=60.68 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINIS 991 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v~ 991 (1226)
.|+|+|.||+|||++++.++ .+|..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 9999887765
No 488
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.79 E-value=0.11 Score=67.11 Aligned_cols=100 Identities=21% Similarity=0.302 Sum_probs=54.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEecCc----cccccccchHHHHHHHHHHH----------HhcCCeE
Q 000914 961 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSS----ITSKWFGEGEKYVKAVFSLA----------SKIAPSV 1021 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~el---g--~~fi~v~~s~----L~s~~~Ge~e~~I~~lF~~A----------~k~~PsI 1021 (1226)
-++|+|+||||||+++++|...+ + ..++-+.... -+....|.....+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999997655 3 3444333221 11111222223333433211 1123579
Q ss_pred EEEccccccccCCCCCchHHHHHHHHHhhhhhccCCcccCCCcEEEEEecCCCCCC
Q 000914 1022 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1077 (1226)
Q Consensus 1022 LfIDEID~L~~~r~~~~~~e~l~~vl~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 1077 (1226)
|+|||+..+ .. .++..++..+ . ...+++++|=.+..-.+
T Consensus 420 lIvDEaSMv--------d~----~~~~~Ll~~~---~--~~~rlilvGD~~QLpsV 458 (720)
T TIGR01448 420 LIVDESSMM--------DT----WLALSLLAAL---P--DHARLLLVGDTDQLPSV 458 (720)
T ss_pred EEEeccccC--------CH----HHHHHHHHhC---C--CCCEEEEECccccccCC
Confidence 999999766 11 2233333322 2 23568888766654333
No 489
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.12 Score=53.55 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=42.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecCcccc-------c---c---ccchHHHHHHHHHHHHhcCCeEE
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITS-------K---W---FGEGEKYVKAVFSLASKIAPSVV 1022 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~elg~~--fi~v~~s~L~s-------~---~---~Ge~e~~I~~lF~~A~k~~PsIL 1022 (1226)
+...+.|.|++|+|||+|+++|+..+... -+.++...+.. . + ...++ .-+-.+..+--..|.++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARALLLNPDLL 102 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHHHhcCCCEE
Confidence 44568999999999999999998766321 12333221110 0 0 11122 12223444445578999
Q ss_pred EEccccc
Q 000914 1023 FVDEVDS 1029 (1226)
Q Consensus 1023 fIDEID~ 1029 (1226)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999864
No 490
>PLN02674 adenylate kinase
Probab=94.76 E-value=0.029 Score=63.00 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
+...|+|.||||+||+++|+.||+.+++..+..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 346799999999999999999999998765543
No 491
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.76 E-value=0.047 Score=61.37 Aligned_cols=88 Identities=18% Similarity=0.300 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccccCCCcccccccccccccchHHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCChhHHHHH
Q 000914 430 ARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQET 509 (1226)
Q Consensus 430 ~~~~~~~~~l~~~vv~~~~i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~ 509 (1226)
.|+...+.-+.+.-+++..-+-|||||-.. ++..+.++..|.- |..+.....+.++|+||+| .+++.
T Consensus 48 ~~q~~~~~~~~~s~i~~~~~~~tFdnf~~~-~~~q~~al~~a~~----------~~~~~~~~~~~~~l~G~~G--tGKTh 114 (244)
T PRK07952 48 NRAMKMQRTFNRSGIRPLHQNCSFENYRVE-CEGQMNALSKARQ----------YVEEFDGNIASFIFSGKPG--TGKNH 114 (244)
T ss_pred HHHHHHHHHHHHcCCCccccCCccccccCC-CchHHHHHHHHHH----------HHHhhccCCceEEEECCCC--CCHHH
Confidence 344455666778888988899999998654 3444444443332 2222222345899999999 89999
Q ss_pred HHHHHHhhh---CCeEEEEeccCC
Q 000914 510 LAKALAKHF---SARLLIVDSLLL 530 (1226)
Q Consensus 510 LaKALA~~f---~a~lL~~D~~~~ 530 (1226)
|+.|+|+++ |.+.++++..++
T Consensus 115 La~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 115 LAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred HHHHHHHHHHhcCCeEEEEEHHHH
Confidence 999999998 667787766444
No 492
>PRK04182 cytidylate kinase; Provisional
Probab=94.75 E-value=0.028 Score=58.78 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFIN 989 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~ 989 (1226)
.|+|.|++|+|||++++.+|..++++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999998865
No 493
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.72 E-value=0.027 Score=57.98 Aligned_cols=31 Identities=39% Similarity=0.681 Sum_probs=25.2
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 000914 964 LFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 964 L~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~ 996 (1226)
|.||||+|||++|+.||.++++. .++..++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHH
Confidence 68999999999999999999865 45554544
No 494
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.69 E-value=0.029 Score=58.44 Aligned_cols=26 Identities=42% Similarity=0.671 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000914 962 ILLFGPPGTGKTMLAKAVATEAGANFI 988 (1226)
Q Consensus 962 VLL~GPPGTGKT~LArAIA~elg~~fi 988 (1226)
|.|+|++|||||+|+++|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 88776
No 495
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.68 E-value=0.16 Score=62.64 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=52.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc----------------------chHHH
Q 000914 958 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG----------------------EGEKY 1006 (1226)
Q Consensus 958 P~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~v~~s~L~s~------~~G----------------------e~e~~ 1006 (1226)
+...+||.||||+|||+|+..++... |-+.+++...+-... .+| ..+..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 44669999999999999999988765 556666665431100 000 11456
Q ss_pred HHHHHHHHHhcCCeEEEEccccccc
Q 000914 1007 VKAVFSLASKIAPSVVFVDEVDSML 1031 (1226)
Q Consensus 1007 I~~lF~~A~k~~PsILfIDEID~L~ 1031 (1226)
+..+.+......|.+|+||-+..+.
T Consensus 342 ~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 342 LQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6677777788889999999998774
No 496
>PRK01184 hypothetical protein; Provisional
Probab=94.66 E-value=0.029 Score=59.55 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000914 961 GILLFGPPGTGKTMLAKAVATEAGANFINI 990 (1226)
Q Consensus 961 gVLL~GPPGTGKT~LArAIA~elg~~fi~v 990 (1226)
-|+|+|+||+||||+++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48999999999999987 788999887655
No 497
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=94.64 E-value=0.12 Score=59.62 Aligned_cols=143 Identities=19% Similarity=0.248 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHH
Q 000914 929 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVK 1008 (1226)
Q Consensus 929 le~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v~~s~L~s~~~Ge~e~~I~ 1008 (1226)
..++++.|.+++-..+... .+...-++|+|+.|+|||+++..|..-+|-..+.+..+..... ++..
T Consensus 54 d~~~~~~l~~~lg~~L~~~--------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~-~~~~----- 119 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGN--------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNE-FQEH----- 119 (304)
T ss_pred CHHHHHHHHHHHhHHhcCC--------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhh-ccCC-----
Confidence 3456677777665544321 2233569999999999999999998888765543332222222 1110
Q ss_pred HHHHHHHhcCCeEEEEccccccccCCCCCchHHHHHHHHHh--hhhhccCCcc-cCCCcEEEEEecCCCCC---CcHHHH
Q 000914 1009 AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE--FMVNWDGLRT-KDKERVLVLAATNRPFD---LDEAVV 1082 (1226)
Q Consensus 1009 ~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~vl~~--Ll~~ldgl~~-k~~~~VlVIaTTN~p~~---Ld~aLl 1082 (1226)
-|..|.-...-+++.||++.- .. .....+..+... +.....+... .-.....+|.+||..-. .+.++.
T Consensus 120 -~f~~a~l~gk~l~~~~E~~~~--~~---~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~~ 193 (304)
T TIGR01613 120 -RFGLARLEGKRAVIGDEVQKG--YR---DDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGIK 193 (304)
T ss_pred -CchhhhhcCCEEEEecCCCCC--cc---ccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhhe
Confidence 144444444578899998631 11 111222222210 0000000000 01124567777876433 457899
Q ss_pred hhccccccCC
Q 000914 1083 RRLPRRLMVN 1092 (1226)
Q Consensus 1083 rRF~~~I~l~ 1092 (1226)
||+ .+|.++
T Consensus 194 RR~-~vi~f~ 202 (304)
T TIGR01613 194 RRL-RIIPFT 202 (304)
T ss_pred eeE-EEEecc
Confidence 987 455543
No 498
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.62 E-value=0.095 Score=62.15 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=43.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecC-ccccc------------cccchHHHHHHHHHHHHhcCCe
Q 000914 960 KGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS-SITSK------------WFGEGEKYVKAVFSLASKIAPS 1020 (1226)
Q Consensus 960 ~gVLL~GPPGTGKT~LArAIA~elg------~~fi~v~~s-~L~s~------------~~Ge~e~~I~~lF~~A~k~~Ps 1020 (1226)
.-|+++||+|+|||+++++++.++. ..++.+.-+ ++.-. ..+............+.+..|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 4599999999999999999998762 233332211 11100 0111111234455567788999
Q ss_pred EEEEcccc
Q 000914 1021 VVFVDEVD 1028 (1226)
Q Consensus 1021 ILfIDEID 1028 (1226)
+|++.|+.
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999984
No 499
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=94.61 E-value=0.024 Score=50.56 Aligned_cols=35 Identities=34% Similarity=0.697 Sum_probs=31.3
Q ss_pred ccccHHHHHHHHHHhcccccccccchhhhHHHHHHhc
Q 000914 1176 RPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1212 (1226)
Q Consensus 1176 r~Lt~eDF~~Al~~v~pS~s~e~~~~~~~v~W~DigG 1212 (1226)
.+|+++||..|+++++||++.+ .+..+.+|+..||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~--dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQE--DLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HH--HHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Confidence 4799999999999999999987 6788999999998
No 500
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.60 E-value=0.17 Score=58.13 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEecCc
Q 000914 959 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 994 (1226)
Q Consensus 959 ~~gVLL~GPPGTGKT~LArAIA~el----g-~~fi~v~~s~ 994 (1226)
+..++|.||+|+|||+++..||..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4569999999999999999998765 3 5566666543
Done!