Query 000914
Match_columns 1226
No_of_seqs 523 out of 3837
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 17:51:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000914.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_680-684//hhsearch_pdb/000914hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 590.8 11.0 546 449-1212 199-763 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 412.5 3.5 546 449-1213 199-764 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 373.7 26.1 250 918-1196 142-395 (405)
4 3cf2_A TER ATPase, transitiona 1.0 1 1 372.1 11.5 288 918-1218 198-487 (806)
5 4b4t_I 26S protease regulatory 1.0 1 1 366.8 22.3 252 917-1197 175-430 (437)
6 4b4t_M 26S protease regulatory 1.0 1 1 366.4 24.3 252 917-1197 174-429 (434)
7 4b4t_H 26S protease regulatory 1.0 1 1 366.0 26.0 261 918-1208 203-467 (467)
8 4b4t_L 26S protease subunit RP 1.0 1 1 364.2 23.6 251 918-1197 175-429 (437)
9 4b4t_K 26S protease regulatory 1.0 1 1 350.9 25.6 250 918-1196 166-421 (428)
10 1xwi_A SKD1 protein; VPS4B, AA 1.0 1 1 312.9 29.3 291 919-1215 7-322 (322)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=590.82 Aligned_cols=546 Identities=27% Similarity=0.409 Sum_probs=423.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECC
Q ss_conf 43233345655406799999883332024653111147899889921410789705789999999985607719997466
Q 000914 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1226)
Q Consensus 449 i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~ 528 (1226)
-+|+|+++..+ +..|..|.+....+|+|+++++. --....++|||+|||| +++++||||+|+++++.++.++.+
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~~--~g~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKA--IGVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGTS--CCCCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEEHH
T ss_pred CCCCHHHHCCH--HHHHHHHHHHHHHHCCCHHHHHH--CCCCCCCEEEEECCCC--CCHHHHHHHHHHHHCCEEEEEEHH
T ss_conf 99990351499--99999999999987519898863--5899997589779899--988999999999719839999737
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 78999986420001211466767899998865216889732224445543356789998766233476444579834684
Q 000914 529 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 608 (1226)
Q Consensus 529 ~l~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~ 608 (1226)
++.+.+..
T Consensus 273 ~l~sk~~g------------------------------------------------------------------------ 280 (806)
T 3cf2_A 273 EIMSKLAG------------------------------------------------------------------------ 280 (806)
T ss_dssp HHHSSCTT------------------------------------------------------------------------
T ss_pred HHHCCCCH------------------------------------------------------------------------
T ss_conf 95433316------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCH
Q ss_conf 04688998886034228998778889987788874100355444689851456899999999985104789869997470
Q 000914 609 GNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDI 688 (1226)
Q Consensus 609 g~~~~~~~~~p~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~d~~~~~~~~~~~~~~l~evl~ses~~~P~Ilfi~di 688 (1226)
+....+..+|+.+.. .+|.||||||+
T Consensus 281 ---------------------------------------------------ese~~lr~lF~~A~~---~~PsIIfIDEi 306 (806)
T 3cf2_A 281 ---------------------------------------------------ESESNLRKAFEEAEK---NAPAIIFIDEL 306 (806)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTT---SCSEEEEEESG
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHH---CCCEEEEEEHH
T ss_conf ---------------------------------------------------789999999999997---29929998510
Q ss_pred HHHHCC--------CHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCC
Q ss_conf 434214--------9335899999983399--989999731588873224899975020357603332013689985522
Q 000914 689 EKSLTG--------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRL 758 (1226)
Q Consensus 689 e~~l~~--------~~~~~~~l~~~L~~l~--g~vivIgS~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~ 758 (1226)
|.+... ..+..+.|...++.+. ++|+|||++|+.+. ++.
T Consensus 307 Dal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~------------------------------LD~- 355 (806)
T 3cf2_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS------------------------------IDP- 355 (806)
T ss_dssp GGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT------------------------------SCT-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH------------------------------CCH-
T ss_conf 0233445778873999999999999746666698799996698032------------------------------698-
Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-CCCCCHHHHCCC
Q ss_conf 3244562689989763179908962883467999--9999985523444203312678777330899-852100022025
Q 000914 759 HDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKD 835 (1226)
Q Consensus 759 ~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--rwk~qLe~dLpdlk~R~nIl~IhT~L~~n~L-~~~dL~~La~~t 835 (1226)
+++| ||.+++++++|+...|..|+++|+. ...+ .+++|..||..|
T Consensus 356 ------------------------------ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~--~~~~~~dvdl~~lA~~T 403 (806)
T 3cf2_A 356 ------------------------------ALRRFGRFDREVDIGIPDATGRLEILQIHTK--NMKLADDVDLEQVANET 403 (806)
T ss_dssp ------------------------------TTTSTTSSCEEEECCCCCHHHHHHHHHHTCS--SSEECTTCCHHHHHHHC
T ss_pred ------------------------------HHHCCCCCCEEEECCCCCHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHC
T ss_conf ------------------------------8857863616886689798999999999856--89988643899999756
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf 78897889998711300000134678887-8841-003661376699998655321122210000268269999761598
Q 000914 836 QTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKL-KISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADV 913 (1226)
Q Consensus 836 k~~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl-~id~~si~~~~~df~~a~~e~k~~~~slk~iv~~~e~e~~ll~~i 913 (1226)
.||+|+||+.+|..|+..++.|..+.+.. .... ......+.+...||..++....+... . .
T Consensus 404 ~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~--r---------------~ 466 (806)
T 3cf2_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL--R---------------E 466 (806)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCC--C---------------C
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCC--C---------------C
T ss_conf 8998999999999999999984145120001332045522556519999999972878311--2---------------3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 99999888841135849999999999874037825441278888992299996898829999999999919938999567
Q 000914 914 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 993 (1226)
Q Consensus 914 ip~~e~~vtfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gILL~GPpGTGKT~LAkAIA~elg~~fi~Is~s 993 (1226)
.....+.++|++++|++++++.|.+.+.+|+.+++.|.+.+ ..|++|+|||||||||||++|+++|++++.+|+.++++
T Consensus 467 ~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~ 545 (806)
T 3cf2_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 (806)
T ss_dssp CCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHH
T ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 44457887888817889999999999975666899997148-88886079866877896399999999838966874241
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 42200246308999999999883199089990420001477998--5279999998866664069855678767999805
Q 000914 994 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1071 (1226)
Q Consensus 994 ~L~s~~~Ge~ek~Ir~iF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT 1071 (1226)
+++++|+|++++.++.+|..|++.+||||||||||.|++.|... .......+++++|+..|+|+... ..|+|||||
T Consensus 546 ~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aT 623 (806)
T 3cf2_A 546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGAT 623 (806)
T ss_dssp HHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS--SSEEEECC-
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEEC
T ss_conf 121033436899999999999972996352042567763158888898669999999999997487877--998999937
Q ss_pred CCCCCCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998898399982--025442478999789999999999632258902199999983799499999999999865269999
Q 000914 1072 NRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1149 (1226)
Q Consensus 1072 N~p~~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~~l~k~~l~~didl~~LA~~T~GySgsDL~~L~~~Aa~~aireil 1149 (1226)
|+|+.||++++| ||++.|++++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|++|++.++|+.+
T Consensus 624 N~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~ 703 (806)
T 3cf2_A 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 703 (806)
T ss_dssp CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98043898471778550799979969999999999985679998778999999768999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 898999999985115999998866654453999999999815562111111024579999733
Q 000914 1150 EKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1212 (1226)
Q Consensus 1150 e~~~~ek~~~~~~~~~~~~~~~~~~~r~It~eDF~~Ai~kv~pS~s~e~~~~~~~v~W~DigG 1212 (1226)
+............. ...........++|+++||.+|+++++||++.+ .+..+.+|.+.++
T Consensus 704 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~--~l~~y~~~~~~f~ 763 (806)
T 3cf2_A 704 ESEIRRERERQTNP-SAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTLQ 763 (806)
T ss_dssp C------------------------CCC----CCTTTC-----------------CCCC----
T ss_pred HHHHHHHHHHCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHH
T ss_conf 85644433301574-100123345668647999999998679999999--9999999999972
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=412.50 Aligned_cols=546 Identities=27% Similarity=0.412 Sum_probs=398.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECC
Q ss_conf 43233345655406799999883332024653111147899889921410789705789999999985607719997466
Q 000914 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1226)
Q Consensus 449 i~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~D~~ 528 (1226)
-.++|+++-.+ +..+..|.+....+|+++++.+.. --.....|||.||+| +++++||||||+..+..++.++..
T Consensus 199 ~~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~l--~i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~~~ 272 (806)
T 1ypw_A 199 NEVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKAI--GVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTSS--CCCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEEHH
T ss_pred CCCCHHHHCCH--HHHHHHHHHHHHHHHHCHHHHHHC--CCCCCCEEEEECCCC--CCHHHHHHHHHHHCCCCEEEEECH
T ss_conf 78998882880--999999999999874298999863--889997389989399--987999999999719968999755
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 78999986420001211466767899998865216889732224445543356789998766233476444579834684
Q 000914 529 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 608 (1226)
Q Consensus 529 ~l~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~ 608 (1226)
.+.+.+..+
T Consensus 273 ~l~~~~~g~----------------------------------------------------------------------- 281 (806)
T 1ypw_A 273 EIMSKLAGE----------------------------------------------------------------------- 281 (806)
T ss_dssp HHSSSSTTH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
T ss_conf 765441015-----------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCH
Q ss_conf 04688998886034228998778889987788874100355444689851456899999999985104789869997470
Q 000914 609 GNVTSGTTVQPTLRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDI 688 (1226)
Q Consensus 609 g~~~~~~~~~p~v~fd~~~~~~~~l~~~~e~~~~~~~~~~~l~~d~~~~~~~~~~~~~~l~evl~ses~~~P~Ilfi~di 688 (1226)
..-.+..+|+-+.. ..|.||||+|+
T Consensus 282 ----------------------------------------------------~~~~l~~vf~~a~~---~~p~il~iDEi 306 (806)
T 1ypw_A 282 ----------------------------------------------------SESNLRKAFEEAEK---NAPAIIFIDEL 306 (806)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHH---HCSEEEEEESG
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHH---CCCCEEEECCH
T ss_conf ----------------------------------------------------89999999999986---49957983007
Q ss_pred HHHHCCC--------HHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCC
Q ss_conf 4342149--------335899999983399--989999731588873224899975020357603332013689985522
Q 000914 689 EKSLTGN--------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRL 758 (1226)
Q Consensus 689 e~~l~~~--------~~~~~~l~~~L~~l~--g~vivIgS~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~ 758 (1226)
+.++... .+....+...++.+. .+++||++++.. +.++.
T Consensus 307 d~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~------------------------------~~ld~- 355 (806)
T 1ypw_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP------------------------------NSIDP- 355 (806)
T ss_dssp GGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCT------------------------------TTSCT-
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC------------------------------HHCCH-
T ss_conf 77511146663168899999999986541146617876023981------------------------------00499-
Q ss_pred CCCCCCCHHHHHHHHH--HCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-CCCCCHHHHCCC
Q ss_conf 3244562689989763--1799089628834679999999985523444203312678777330899-852100022025
Q 000914 759 HDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKD 835 (1226)
Q Consensus 759 ~~~~~~~~~~~~~l~~--lf~~~i~i~~P~DeALLRrwk~qLe~dLpdlk~R~nIl~IhT~L~~n~L-~~~dL~~La~~t 835 (1226)
.+.+ +|...+.+..|..+.++..|.... ....+ .+.++..++..+
T Consensus 356 ------------al~r~gRf~~~i~i~~p~~~~r~~il~~~~--------------------~~~~l~~~~~l~~la~~t 403 (806)
T 1ypw_A 356 ------------ALRRFGRFDREVDIGIPDATGRLEILQIHT--------------------KNMKLADDVDLEQVANET 403 (806)
T ss_dssp ------------TTTSTTSSCEEECCCCCCHHHHHHHHHHTT--------------------TTSCCCTTCCTHHHHHSC
T ss_pred ------------HHHCCCCCCCCCCCCCCCHHHHHHHHHHHH--------------------HCCCCCCCCHHHHHHHHH
T ss_conf ------------986465544435569999999999999987--------------------338776220067777761
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 7889788999871130000013467888788410036---6137669999865532112221000026826999976159
Q 000914 836 QTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKIST---ESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLAD 912 (1226)
Q Consensus 836 k~~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~---~si~~~~~df~~a~~e~k~~~~slk~iv~~~e~e~~ll~~ 912 (1226)
.+|.++++..+|..|...++.+....+.... ..+.. ..+.+...+|..+.....+.. ..
T Consensus 404 ~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~-~~~~~~~~~~~~v~~~d~~~al~~~~~s~-----------------~~ 465 (806)
T 1ypw_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVMNSLAVTMDDFRWALSQSNPSA-----------------LR 465 (806)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH-HHCCHHHHTTCCCCTTHHHHHHHHSCCCC-----------------CC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH-HCCCHHHHHHHHHHHHHHHCCCCCCCCHH-----------------HH
T ss_conf 4753689999999999998764201011554-20101244455555665311112357144-----------------42
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 89999988884113584999999999987403782544127888899229999689882999999999991993899956
Q 000914 913 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM 992 (1226)
Q Consensus 913 iip~~e~~vtfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gILL~GPpGTGKT~LAkAIA~elg~~fi~Is~ 992 (1226)
......+.++|++++|++++++.|.+.+.+++.+++.|...++ .++.++||+||||||||++|+++|.+++.+|+.+++
T Consensus 466 ~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 544 (806)
T 1ypw_A 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC-CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCC
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 0002575421111244302222189999755536398975488-877536897799987899999999984898799861
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf 742200246308999999999883199089990420001477998--527999999886666406985567876799980
Q 000914 993 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1070 (1226)
Q Consensus 993 s~L~s~~~Ge~ek~Ir~iF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaT 1070 (1226)
+++.+.|+|+.+..++.+|..|+...|+||||||||.++..+... .......+++++|+..+++.... .+++||+|
T Consensus 545 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~t 622 (806)
T 1ypw_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGA 622 (806)
T ss_dssp SSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEE
T ss_conf 6765530575478899999998706985999987445421126877776416899999999987545666--87699984
Q ss_pred CCCCCCCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 5998898399982--02544247899978999999999963225890219999998379949999999999986526999
Q 000914 1071 TNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1148 (1226)
Q Consensus 1071 TN~p~~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~~l~k~~l~~didl~~LA~~T~GySgsDL~~L~~~Aa~~airei 1148 (1226)
||+++.||++++| ||+..++++.|+.++|.+||+.++.+..+..++++..++..+.||+++||.++|+.|+..++++.
T Consensus 623 TN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 623 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp CBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 38712279878376556730555997999999999998645999752279999973500599999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 98989999999851159999988666544539999999998155621111110245799997338
Q 000914 1149 LEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1213 (1226)
Q Consensus 1149 le~~~~ek~~~~~~~~~~~~~~~~~~~r~It~eDF~~Ai~kv~pS~s~e~~~~~~~v~W~DigG~ 1213 (1226)
++............. ............+++++||..|++.++||++.+ .+..+.+|.+.++.
T Consensus 703 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~--~~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 703 IESEIRRERERQTNP-SAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTLQQ 764 (806)
T ss_dssp -------------------------CCTTTTTTSSCCCCCC------------------------
T ss_pred HHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHHH
T ss_conf 998776654301464-312334346667607999999998678999999--99999999999976
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=373.67 Aligned_cols=250 Identities=33% Similarity=0.581 Sum_probs=229.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411358499999999998740378254412788889922999968988299999999999199389995674220
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 997 (1226)
Q Consensus 918 e~~vtfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gILL~GPpGTGKT~LAkAIA~elg~~fi~Is~s~L~s 997 (1226)
.+.++|+||+|++++++.|++.+.+|+.+|++|.+.++ .|++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHC
T ss_conf 99998888288899999999999998749999986799-98882588589999878999999985188852888689511
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0246308999999999883199089990420001477998--52799999988666640698556787679998059988
Q 000914 998 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 998 ~~~Ge~ek~Ir~iF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
+|.|++++.++.+|..|+..+||||||||||.++++|... +......+++++|+..+||+... ..|+||||||+++
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd 298 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLD 298 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEECCCCHH
T ss_conf 33546899999999999870994676533411115778889997689999999999960433888--8757881269814
Q ss_pred CCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98399982--0254424789997899999999996322589021999999837994999999999998652699998989
Q 000914 1076 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1153 (1226)
Q Consensus 1076 ~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~~l~k~~l~~didl~~LA~~T~GySgsDL~~L~~~Aa~~aireile~~~ 1153 (1226)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|.+|++.++++
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~------ 372 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE------ 372 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 48996728776766997699699999999999855999996579999998779999999999999999999986------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9999998511599999886665445399999999981556211
Q 000914 1154 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1196 (1226)
Q Consensus 1154 ~ek~~~~~~~~~~~~~~~~~~~r~It~eDF~~Ai~kv~pS~s~ 1196 (1226)
....++++||..|++++.+....
T Consensus 373 --------------------~~~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 373 --------------------RRIHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp --------------------TCSBCCHHHHHHHHHHHHHHHTC
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf --------------------99875999999999998572655
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=372.12 Aligned_cols=288 Identities=37% Similarity=0.580 Sum_probs=254.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411358499999999998740378254412788889922999968988299999999999199389995674220
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 997 (1226)
Q Consensus 918 e~~vtfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gILL~GPpGTGKT~LAkAIA~elg~~fi~Is~s~L~s 997 (1226)
.+.++|+||+|++++++.|++.+.+|+.+|++|.+.+ .+|++|+|||||||||||+||+++|++++.+|+.++++++.+
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf 8999903514999999999999998751989886358-999975897798999889999999997198399997379543
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 02463089999999998831990899904200014779985279999998866664069855678767999805998898
Q 000914 998 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1077 (1226)
Q Consensus 998 ~~~Ge~ek~Ir~iF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1077 (1226)
+|.|+.++.++.+|..|++++|+||||||||.|++.+.... .+..++++++|+..++++... .+|+||++||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCHHHC
T ss_conf 33167899999999999972992999851002334457788-739999999999997466666--987999966980326
Q ss_pred CHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 399982--025442478999789999999999632258902199999983799499999999999865269999898999
Q 000914 1078 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1155 (1226)
Q Consensus 1078 d~aLlr--RFd~~I~I~lPd~eeR~eILk~~l~k~~l~~didl~~LA~~T~GySgsDL~~L~~~Aa~~aireile~~~~e 1155 (1226)
|++++| ||++.|++++|+.++|.+||+.++++..+..++++..+|..|+||+|+||..+|.+|++.++++........
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98885786361688668979899999999985689988643899999756899899999999999999998414512000
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 999985115999998866654453999999999815562111111024579999733887644
Q 000914 1156 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1218 (1226)
Q Consensus 1156 k~~~~~~~~~~~~~~~~~~~r~It~eDF~~Ai~kv~pS~s~e~~~~~~~v~W~DigG~~~~RK 1218 (1226)
.............++++||..|+..+.|+...+.....+.+.|+||+|++.+|+
T Consensus 434 ---------~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~ 487 (806)
T 3cf2_A 434 ---------DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp ---------CCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHH
T ss_pred ---------CCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHH
T ss_conf ---------133204552255651999999997287831123444578878888178899999
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=366.76 Aligned_cols=252 Identities=35% Similarity=0.618 Sum_probs=229.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99888841135849999999999874037825441278888992299996898829999999999919938999567422
Q 000914 917 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 917 ~e~~vtfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gILL~GPpGTGKT~LAkAIA~elg~~fi~Is~s~L~ 996 (1226)
..+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred CCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 689986005576999999999999998769999986799-9777884488999639999999999859987998879953
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 002463089999999998831990899904200014779985--279999998866664069855678767999805998
Q 000914 997 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1074 (1226)
Q Consensus 997 s~~~Ge~ek~Ir~iF~~A~k~~PsILfIDEID~L~~~r~~~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1074 (1226)
++|+|++++.++.+|..|+..+||||||||+|.+++.|.... ......+++.+++..++++... ..|+||||||++
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrp 331 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKI 331 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCS
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCH
T ss_conf 144766999999999999865991898761222036677888776589999999999972476788--997999957980
Q ss_pred CCCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 898399982--025442478999789999999999632258902199999983799499999999999865269999898
Q 000914 1075 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1152 (1226)
Q Consensus 1075 ~~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~~l~k~~l~~didl~~LA~~T~GySgsDL~~L~~~Aa~~aireile~~ 1152 (1226)
+.||+|++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|.+|++.++++
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~----- 406 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE----- 406 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT-----
T ss_pred HHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 555998864886027998089699999999999964899997679999997679998999999999999999984-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 999999985115999998866654453999999999815562111
Q 000914 1153 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1197 (1226)
Q Consensus 1153 ~~ek~~~~~~~~~~~~~~~~~~~r~It~eDF~~Ai~kv~pS~s~e 1197 (1226)
....|+++||..|++++.++...+
T Consensus 407 ---------------------~~~~It~eDf~~Al~rv~~~~~~e 430 (437)
T 4b4t_I 407 ---------------------RRMQVTAEDFKQAKERVMKNKVEE 430 (437)
T ss_dssp ---------------------TCSCBCHHHHHHHHHHHHHHHCCC
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf ---------------------899669999999999870798733
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=366.37 Aligned_cols=252 Identities=32% Similarity=0.568 Sum_probs=231.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99888841135849999999999874037825441278888992299996898829999999999919938999567422
Q 000914 917 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 996 (1226)
Q Consensus 917 ~e~~vtfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gILL~GPpGTGKT~LAkAIA~elg~~fi~Is~s~L~ 996 (1226)
..+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ +|++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 897998676095799999999999999749999986799-9887268779499988999999999959988998644643
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 0024630899999999988319908999042000147799852--79999998866664069855678767999805998
Q 000914 997 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1074 (1226)
Q Consensus 997 s~~~Ge~ek~Ir~iF~~A~k~~PsILfIDEID~L~~~r~~~~~--~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1074 (1226)
++|+|++++.++.+|..|+..+||||||||+|.+++.|..... .....+++.+|+..++|+... .+|+||||||++
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSC
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCC
T ss_conf 134563899999999999861990896033256652257788887469999999999971366888--998999948992
Q ss_pred CCCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 898399982--025442478999789999999999632258902199999983799499999999999865269999898
Q 000914 1075 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1152 (1226)
Q Consensus 1075 ~~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~~l~k~~l~~didl~~LA~~T~GySgsDL~~L~~~Aa~~aireile~~ 1152 (1226)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|.+|++.++++
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~----- 405 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN----- 405 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH-----
T ss_pred HHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 233996715774038998089599999999999856899987679999998689989999999999999999986-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 999999985115999998866654453999999999815562111
Q 000914 1153 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1197 (1226)
Q Consensus 1153 ~~ek~~~~~~~~~~~~~~~~~~~r~It~eDF~~Ai~kv~pS~s~e 1197 (1226)
....|+++||..|++++.|+.++.
T Consensus 406 ---------------------~~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 406 ---------------------GQSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ---------------------TCSSBCHHHHHHHHHSCSSSCCCC
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf ---------------------998769999999999973777757
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=366.01 Aligned_cols=261 Identities=32% Similarity=0.567 Sum_probs=234.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411358499999999998740378254412788889922999968988299999999999199389995674220
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 997 (1226)
Q Consensus 918 e~~vtfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gILL~GPpGTGKT~LAkAIA~elg~~fi~Is~s~L~s 997 (1226)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.+ .+|++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHC
T ss_conf 9999878854599999999999998842999998779-999981476489998099999999844689869988699502
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0246308999999999883199089990420001477998--52799999988666640698556787679998059988
Q 000914 998 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 998 ~~~Ge~ek~Ir~iF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
+|+|++++.++.+|..|+..+||||||||+|.+++.|... +......+++.+++..+++.... ..|+||+|||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEECCCCCC
T ss_conf 66778999999999998761784675223211013556767786278999999999986555788--8379882878931
Q ss_pred CCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98399982--0254424789997899999999996322589021999999837994999999999998652699998989
Q 000914 1076 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1153 (1226)
Q Consensus 1076 ~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~~l~k~~l~~didl~~LA~~T~GySgsDL~~L~~~Aa~~aireile~~~ 1153 (1226)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|.+|++.++++
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~------ 433 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA------ 433 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH------
T ss_pred CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 17954636665507998389699999999999854899987779999997779999999999999999999983------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9999998511599999886665445399999999981556211111102457999
Q 000914 1154 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1208 (1226)
Q Consensus 1154 ~ek~~~~~~~~~~~~~~~~~~~r~It~eDF~~Ai~kv~pS~s~e~~~~~~~v~W~ 1208 (1226)
....++++||..|++++.++..+. .....+.+||
T Consensus 434 --------------------~~~~it~~Df~~Al~kV~~g~~k~-s~~~~y~~~n 467 (467)
T 4b4t_H 434 --------------------RRKVATEKDFLKAVDKVISGYKKF-SSTSRYMQYN 467 (467)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHC
T ss_conf --------------------887669999999999996474561-2578998619
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=364.17 Aligned_cols=251 Identities=37% Similarity=0.647 Sum_probs=229.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411358499999999998740378254412788889922999968988299999999999199389995674220
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 997 (1226)
Q Consensus 918 e~~vtfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gILL~GPpGTGKT~LAkAIA~elg~~fi~Is~s~L~s 997 (1226)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHCC
T ss_conf 99989667178599999999999998749999986798-97876999899998499999999998599989984146205
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 02463089999999998831990899904200014779985--2799999988666640698556787679998059988
Q 000914 998 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 998 ~~~Ge~ek~Ir~iF~~A~k~~PsILfIDEID~L~~~r~~~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
+|.|++++.++.+|..|+.++||||||||+|.+++.|...+ ......+++++|+..++|+... ..|+||+|||+++
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCCH
T ss_conf 52017899999999999863896464204433333334478875368999999999983466677--9869999339903
Q ss_pred CCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98399982--0254424789997899999999996322589021999999837994999999999998652699998989
Q 000914 1076 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1153 (1226)
Q Consensus 1076 ~Ld~aLlr--RFd~~I~I~lPd~eeR~eILk~~l~k~~l~~didl~~LA~~T~GySgsDL~~L~~~Aa~~aireile~~~ 1153 (1226)
.||++++| ||++.|+|++|+.++|.+||+.++.+.....++++..+|..|+||+|+||.++|.+|++.++++
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~------ 405 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD------ 405 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 31897827771020013599699999999999865899986458999997689999999999999999999986------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99999985115999998866654453999999999815562111
Q 000914 1154 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1197 (1226)
Q Consensus 1154 ~ek~~~~~~~~~~~~~~~~~~~r~It~eDF~~Ai~kv~pS~s~e 1197 (1226)
....|+++||..|++++.++...+
T Consensus 406 --------------------~~~~i~~~d~~~Al~~v~~~~k~e 429 (437)
T 4b4t_L 406 --------------------DRDHINPDDLMKAVRKVAEVKKLE 429 (437)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHTCC--
T ss_pred --------------------CCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf --------------------998779999999999987503701
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=350.86 Aligned_cols=250 Identities=35% Similarity=0.557 Sum_probs=226.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98888411358499999999998740378254412788889922999968988299999999999199389995674220
Q 000914 918 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 997 (1226)
Q Consensus 918 e~~vtfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gILL~GPpGTGKT~LAkAIA~elg~~fi~Is~s~L~s 997 (1226)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHC
T ss_conf 99998888516999999999999998739999986799-98865888898998889999999998679969993304431
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0246308999999999883199089990420001477998--52799999988666640698556787679998059988
Q 000914 998 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1075 (1226)
Q Consensus 998 ~~~Ge~ek~Ir~iF~~A~k~~PsILfIDEID~L~~~r~~~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1075 (1226)
+|.|++++.++.+|..|+..+||||||||+|.+++.|... .......+++++|+..++|+... .+|+||||||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSS
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCHH
T ss_conf 45460599999999999973997463002243303556787888718999999999984387877--9979999619815
Q ss_pred CCCHHHHH--HCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98399982--025442478-999789999999999632258902199999983799499999999999865269999898
Q 000914 1076 DLDEAVVR--RLPRRLMVN-LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1152 (1226)
Q Consensus 1076 ~Ld~aLlr--RFd~~I~I~-lPd~eeR~eILk~~l~k~~l~~didl~~LA~~T~GySgsDL~~L~~~Aa~~aireile~~ 1152 (1226)
.||++++| ||++.|+++ +|+.++|..||+.++.+..+..++++..||..|+||+|+||.++|++|++.++++
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~----- 397 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK----- 397 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred HCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 569666368751599981999999999999999855799996358999997779988999999999999999987-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCCC
Q ss_conf 99999998511599999886665445399999999981-556211
Q 000914 1153 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV-CASVSS 1196 (1226)
Q Consensus 1153 ~~ek~~~~~~~~~~~~~~~~~~~r~It~eDF~~Ai~kv-~pS~s~ 1196 (1226)
....++++||.+|+.++ .++...
T Consensus 398 ---------------------~~~~i~~~d~~~A~~~~~~~~~~~ 421 (428)
T 4b4t_K 398 ---------------------NRYVILQSDLEEAYATQVKTDNTV 421 (428)
T ss_dssp ---------------------TCSSBCHHHHHHHHHHHSCSCCCS
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf ---------------------998779999999999761766895
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=312.89 Aligned_cols=291 Identities=36% Similarity=0.640 Sum_probs=244.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEEEECCCCCC
Q ss_conf 88884113584999999999987403782544127888899229999689882999999999991-99389995674220
Q 000914 919 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 997 (1226)
Q Consensus 919 ~~vtfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~l~kP~~gILL~GPpGTGKT~LAkAIA~el-g~~fi~Is~s~L~s 997 (1226)
+.++|++|+|++++++.|.+.+.+|+.+++.|... ..|++++||+||||||||++|+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHH
T ss_conf 99998873498999999999999987698977178--8999549998999960999999999980899679987499776
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 02463089999999998831990899904200014779985279999998866664069855678767999805998898
Q 000914 998 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1077 (1226)
Q Consensus 998 ~~~Ge~ek~Ir~iF~~A~k~~PsILfIDEID~L~~~r~~~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1077 (1226)
.|.|+.++.++.+|..|+...|+||||||||.+.+.+... ......+++++++..++++.. ...+++||++||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCC-CCHHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCC
T ss_conf 4311999999999999986299589960478753556665-335899999999999743456-68887999966985658
Q ss_pred CHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 399982025442478999789999999999632258-9021999999837994999999999998652699998989999
Q 000914 1078 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1156 (1226)
Q Consensus 1078 d~aLlrRFd~~I~I~lPd~eeR~eILk~~l~k~~l~-~didl~~LA~~T~GySgsDL~~L~~~Aa~~aireile~~~~ek 1156 (1226)
+++++|||+..+++++|+.++|.+|++.++...... .+.++..|+..++||+|+||..+|..|++.++++.........
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred CHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999316768995796999999999999721788899999999999769999999999999999999999986455554
Q ss_pred HHHHH--------HCCCCCCC-------------CCCC--CCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99985--------11599999-------------8866--6544539999999998155621111110245799997338
Q 000914 1157 ALALA--------ENRASPPL-------------YSSV--DVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1213 (1226)
Q Consensus 1157 ~~~~~--------~~~~~~~~-------------~~~~--~~r~It~eDF~~Ai~kv~pS~s~e~~~~~~~v~W~DigG~ 1213 (1226)
..... +....+.. ...+ ...+|+++||..|+++++||++.+ .+..+.+|++.||.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 243 VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH--DLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH--HHHHHHHHHHTTCS
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHCC
T ss_conf 2144333310000000255654441000012123650003578708999999998679999999--99999999999746
Q ss_pred CC
Q ss_conf 87
Q 000914 1214 GG 1215 (1226)
Q Consensus 1214 ~~ 1215 (1226)
+|
T Consensus 321 ~~ 322 (322)
T 1xwi_A 321 EG 322 (322)
T ss_dssp CC
T ss_pred CC
T ss_conf 99
Done!