BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000915
(1225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L7I1|Y4193_ARATH Uncharacterized protein At4g10930 OS=Arabidopsis thaliana
GN=At4g10930 PE=2 SV=1
Length = 984
Score = 522 bits (1345), Expect = e-147, Method: Compositional matrix adjust.
Identities = 328/669 (49%), Positives = 427/669 (63%), Gaps = 66/669 (9%)
Query: 478 DVTSDIMSIVKGTKCKLPKGLAHKNSADRSSKDRENVSGLRVKKIMKRPAEDKDSSELVQ 537
+ T DI SIVKGT + K L N D+SS + EN +GLRVKKI + P ++K+S LV+
Sbjct: 211 NTTVDIFSIVKGTGRR--KNLMRSNPTDKSS-EAENAAGLRVKKIKRTPEDEKESMVLVE 267
Query: 538 ELRKEIREAVRNRSSKDCDENLFDPKLLAAFRAAIAGPKC-EPVKQPAHLAVKVKKSMLE 596
+LRKEIREAVRN+S +D EN FDPKLLAAFRAA+AGPK E ++ + LAVK KK ML+
Sbjct: 268 KLRKEIREAVRNKSMEDIRENQFDPKLLAAFRAAVAGPKTGEAPRRSSALAVKAKKLMLQ 327
Query: 597 KGKVRESLTKKIYGNSNGRRRRAWNRDCEVEFWKYRCMKATKTEKIGTLKSVLDLLRNNS 656
KGKVRE+LTKKIY + NG+R+ AW+RDCEVEFWK+RC++ K EKI TLKSVL LL+N
Sbjct: 328 KGKVRENLTKKIYADLNGKRKSAWHRDCEVEFWKHRCIQGRKPEKIETLKSVLSLLKNKP 387
Query: 657 QSSDTEQSTEC-QETNPILSRLYLADTSVFPRKDNIMPLSALKATDNSEQSKEQAISMEK 715
+ T S+E Q +NPILSRLYLADTSVFPR DN+ PL A K NS+ + + + +
Sbjct: 388 ADTKTNFSSETPQASNPILSRLYLADTSVFPRNDNLKPLLAPKEMGNSQNNGKPTEASKT 447
Query: 716 PLKLSSDNCASKVAETNKVSSKVGVLSAYEKGTRNMSCSKSNAALSKVHPIQLGDPKVNS 775
K+S A+K + SK+ + G N++ S NS
Sbjct: 448 LPKIS----AAKGSSVKAAGSKLNSGNKQSDGQPNLTSS-------------------NS 484
Query: 776 LKGTATSDDVKVDKRKWALEILARKTAVACKSATHEKPEDTAMLKRNYPLLARLPADMKP 835
+ DD+K DKRKWAL++LARK A+A ++T +K E + LK NYPLLA+LPADM+P
Sbjct: 485 KEMVENPDDLKKDKRKWALQVLARKKALAGNNSTQDK-EGSPELKGNYPLLAQLPADMRP 543
Query: 836 VLAPSHHNKIPISVRQTQLYRLTEFFLRKANLPVIRRTAETELAVADAVNIEKEVADRSN 895
LA S HNK+P++VRQTQLYRLTE L+K NL IRR+A TELAVADA+NIEK +AD+S+
Sbjct: 544 SLATSRHNKVPVAVRQTQLYRLTEHLLKKENLLTIRRSAATELAVADAINIEKAIADKSS 603
Query: 896 SKLVYLNLCSHEISCRSDNKKSTRATESNSSAPPAVPIDELERATDKLSTDHSVEEALRN 955
SK+VYLNLCS EI S++K A E NSS+P A E ER + K S + +V EALR
Sbjct: 604 SKVVYLNLCSQEILHHSESKTMDNAVEPNSSSPMA--DSESERISSKDSDNPAVLEALRA 661
Query: 956 AGLLSDSPPNSPHHPTEV-PSEVDISSMETGEGEPDNVFEMESHAEMDIYGDFEYDLEDE 1014
AG L+DSPPNSP EV P + D S +T E P NVF+M+S + DI+GDFEY+L++E
Sbjct: 662 AG-LADSPPNSPTRSVEVLPEKGDSSLDKTRETGPYNVFDMDSVPDTDIFGDFEYELDEE 720
Query: 1015 DFIGVS-AMKVSNLQPEE-VSKVKVVFSTLNSEKLNNVVDNKVGGGLEKNEHKDSTCLLE 1072
D+ G + A K S +QP+E ++KVKVV ST+ + G L +E +
Sbjct: 721 DYFGATMAKKASVMQPDESLTKVKVVLSTV-----------QPGKSLNPSEVVEDEE--T 767
Query: 1073 SHSDAVIRSSTTEDGTSKPCIPLESLPCEEGED----------------LSLAECEELYG 1116
+ + ++ EDG S +P+E +P EGE LS+AECEELYG
Sbjct: 768 TTENLNETTNGKEDGKS--FVPMELVPEAEGEGEGEGEGEGEGEGGGEILSVAECEELYG 825
Query: 1117 PDKEPLVSK 1125
P E LV +
Sbjct: 826 PGTEKLVER 834
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens
GN=PHRF1 PE=1 SV=3
Length = 1649
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 31/154 (20%)
Query: 27 CGICMDVVIDR--GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSN 84
C IC++ D+ G + C H+FC CI WS N CP+ + L C+ + G
Sbjct: 108 CPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPV---DRTLFKCICIRAQFGGK 164
Query: 85 NIDGDSLSRGEDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTS 144
+ + E+ E+ +E+ C V S D
Sbjct: 165 ILRKIPV---ENTKASEE-----------EEDPTFC------------EVCGRSDREDRL 198
Query: 145 IACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVA 178
+ CD CD YH C+ + D W CP C A
Sbjct: 199 LLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAA 232
>sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus
GN=Phrf1 PE=1 SV=2
Length = 1682
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 27 CGICMDVVIDR--GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSN 84
C IC++ D+ G + C H+FC CI WS N CP+ + F+ I C+
Sbjct: 109 CPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRTVFKCI-CI-------RA 160
Query: 85 NIDGDSLSRGEDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTS 144
+G L + +E NT + + +E+ C V S D
Sbjct: 161 QFNGKILKK---IPVE---NTKACEAE--EEDPTFC------------EVCGRSDREDRL 200
Query: 145 IACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCV 177
+ CD CD YH C+ + D W CP C
Sbjct: 201 LLCDGCDAGYHMECLDPPLQEVPVDEWFCPECT 233
>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus
norvegicus GN=Phrf1 PE=1 SV=2
Length = 1685
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 57/153 (37%), Gaps = 27/153 (17%)
Query: 27 CGICMDVVIDR--GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSN 84
C IC++ D+ G + C H+FC CI WS N CP+ + F+ I C+
Sbjct: 109 CPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRTIFKCI-CI-------RA 160
Query: 85 NIDGDSLSRGEDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTS 144
+G L + I ++ +E+ C V S D
Sbjct: 161 QFNGKILKK-----IPVENTRACEDEEAEEEDPTFC------------EVCGRSDREDRL 203
Query: 145 IACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCV 177
+ CD CD YH C+ + D W CP C
Sbjct: 204 LLCDGCDAGYHMECLDPPLQEVPVDEWFCPECA 236
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72
+C IC+D + LD C H FCF C+ WS CPLC+ F I
Sbjct: 103 KCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSI 149
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72
+C IC+D + LD C H FCF C+ WS CPLC+ F I
Sbjct: 102 KCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSI 148
>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster
GN=Topors PE=1 SV=1
Length = 1038
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72
C IC+ + D C H FCF C+ WS I CPLC+ F+ I
Sbjct: 102 CAICLSRCRRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQPFRTI 147
>sp|P09309|IE61_VZVD E3 ubiquitin-protein ligase IE61 OS=Varicella-zoster virus
(strain Dumas) GN=61 PE=1 SV=1
Length = 467
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 28/54 (51%)
Query: 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDT 80
C ICM V D G C H FCF CI W++ + CPLC+ Q I V DT
Sbjct: 19 CTICMSTVSDLGKTMPCLHDFCFVCIRAWTSTSVQCPLCRCPVQSILHKIVSDT 72
>sp|O94400|YQF7_SCHPO PHD and RING finger domain-containing protein C126.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC126.07c PE=4 SV=1
Length = 571
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 34/141 (24%)
Query: 43 CQHWFCFACIDNWSTITNLCPLCQGEFQLITCV-----PVYDTIGSNNIDGDSLSRGEDW 97
C H+F C+++W + N CPLC+ EF + + P Y +
Sbjct: 56 CGHYFHNHCLESWCRVANTCPLCRTEFLKVDVLEFVKGPWYRA----------------Y 99
Query: 98 SIEEKSNTLSFPSY-YIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHA 156
+EEK+ +++ + DE + C ++ S + + + CD CD YH
Sbjct: 100 PVEEKTQSVANAGEPFEDEGSETC----------RCVICGRSDHAEVLLLCDGCDDAYHT 149
Query: 157 FCVGFDPEGTCEDTWLCPRCV 177
+C+ D + + CP CV
Sbjct: 150 YCLNMD--AVPIEEFYCPNCV 168
>sp|Q99590|SCAFB_HUMAN Protein SCAF11 OS=Homo sapiens GN=SCAF11 PE=1 SV=2
Length = 1463
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 13 DNT-ENDLLNFECGRCGICMDVVIDR--GVLDCCQHWFCFACIDNWSTITNLCPLCQGEF 69
DNT LL E RC IC++ ++++ G + C H FC CI W+ CP+ + F
Sbjct: 26 DNTISTGLLYSEADRCPICLNCLLEKEVGFPESCNHVFCMTCILKWAETLASCPIDRKPF 85
Query: 70 QLI 72
Q +
Sbjct: 86 QAV 88
>sp|Q8TDB6|DTX3L_HUMAN E3 ubiquitin-protein ligase DTX3L OS=Homo sapiens GN=DTX3L PE=1
SV=1
Length = 740
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71
E G C ICMD + ++ VL C+H FC CI+ + +CP CQ + +
Sbjct: 557 EKGICVICMDTISNKKVLPKCKHEFCAPCINKAMSYKPICPTCQTSYGI 605
>sp|P0C775|P28_VACC8 E3 ubiquitin-protein ligase p28-like OS=Vaccinia virus (strain
LC16m8) GN=p28 PE=3 SV=1
Length = 239
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 27 CGICMDVVIDR--------GVLDCCQHWFCFACIDNW------STITNLCPLCQGEFQLI 72
CGIC +VV + G+LD C H FC CI+ W + ++ CP+C+ F+ I
Sbjct: 170 CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHKTRRETGASDNCPICRTRFRNI 229
Query: 73 TCVPVYDTI 81
T Y +
Sbjct: 230 TMSKFYKLV 238
>sp|Q49PZ0|P28_VACC0 E3 ubiquitin ligase p28-like OS=Vaccinia virus (strain LC16m0)
GN=p28 PE=3 SV=1
Length = 239
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 27 CGICMDVVIDR--------GVLDCCQHWFCFACIDNW------STITNLCPLCQGEFQLI 72
CGIC +VV + G+LD C H FC CI+ W + ++ CP+C+ F+ I
Sbjct: 170 CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHKTRRETGASDNCPICRTRFRNI 229
Query: 73 TCVPVYDTI 81
T Y +
Sbjct: 230 TMSKFYKLV 238
>sp|Q8QN38|P28_CWPXB E3 ubiquitin-protein ligase p28-like OS=Cowpox virus (strain
Brighton Red) GN=p28 PE=3 SV=1
Length = 242
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 27 CGICMDVVIDR--------GVLDCCQHWFCFACIDNW------STITNLCPLCQGEFQLI 72
CGIC +VV + G+LD C H FC CI+ W + ++ CP+C+ F+ I
Sbjct: 173 CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232
Query: 73 TCVPVYDTI 81
T Y +
Sbjct: 233 TMSKFYKLV 241
>sp|P87607|P28_CWPXG E3 ubiquitin-protein ligase p28-like OS=Cowpox virus (strain GRI-90
/ Grishak) GN=p28 PE=3 SV=1
Length = 242
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 27 CGICMDVVIDR--------GVLDCCQHWFCFACIDNW------STITNLCPLCQGEFQLI 72
CGIC +VV + G+LD C H FC CI+ W + ++ CP+C+ F+ I
Sbjct: 173 CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232
Query: 73 TCVPVYDTI 81
T Y +
Sbjct: 233 TMSKFYKLV 241
>sp|Q76R05|P28_VAR67 E3 ubiquitin-protein ligase p28-like OS=Variola virus (isolate
Human/India/Ind3/1967) GN=p28 PE=3 SV=1
Length = 242
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 27 CGICMDVVIDR--------GVLDCCQHWFCFACIDNW------STITNLCPLCQGEFQLI 72
CGIC +VV + G+LD C H FC CI+ W + ++ CP+C+ F+ I
Sbjct: 173 CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232
Query: 73 TCVPVYDTI 81
T Y +
Sbjct: 233 TMSKFYKLV 241
>sp|Q85318|P28_ECTVM E3 ubiquitin-protein ligase p28 OS=Ectromelia virus (strain Moscow)
GN=p28 PE=3 SV=1
Length = 241
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 27 CGICMDVVIDR--------GVLDCCQHWFCFACIDNW------STITNLCPLCQGEFQLI 72
CGIC +VV + G+LD C H FC CI+ W + ++ CP+C+ F+ I
Sbjct: 172 CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 231
Query: 73 TCVPVYDTI 81
T Y +
Sbjct: 232 TMSKFYKLV 240
>sp|Q8V571|P28_MONPV E3 ubiquitin-protein ligase p28-like OS=Monkeypox virus GN=p28 PE=3
SV=1
Length = 242
Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 27 CGICMDVVIDR--------GVLDCCQHWFCFACIDNW------STITNLCPLCQGEFQLI 72
CGIC +VV + G+LD C H FC CI+ W + + CP+C+ F+ I
Sbjct: 173 CGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGALDNCPICRTRFRKI 232
Query: 73 TCVPVYDTI 81
T Y +
Sbjct: 233 TMSKFYKLV 241
>sp|Q3UIR3|DTX3L_MOUSE E3 ubiquitin-protein ligase DTX3L OS=Mus musculus GN=Dtx3l PE=2
SV=1
Length = 748
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLC 65
C ICMD + ++ VL C+H FC +CI I +CP+C
Sbjct: 569 CVICMDTISNKHVLPKCKHEFCTSCISKAMLIKPVCPVC 607
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2
(strain K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70
E G C IC+D + C H FC ACI W CPLC+ Q
Sbjct: 9 ELGSCCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPVQ 56
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1
(strain Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70
E G C IC+D + C H FC ACI W CPLC+ Q
Sbjct: 9 ELGSCCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPVQ 56
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYD 79
+C +C++V C H FC+ CI W CP+C+ + TCVP+Y+
Sbjct: 321 KCTLCLEVRT-HTTATICGHLFCWHCITEWCNNKEQCPVCRCPISIRTCVPLYN 373
>sp|Q5HZG4|TAF3_MOUSE Transcription initiation factor TFIID subunit 3 OS=Mus musculus
GN=Taf3 PE=1 SV=2
Length = 932
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 145 IACDSCDLWYHAFCVGFDPEGTCEDTWLCPRC 176
I CD CD WYH CVG E W CP+C
Sbjct: 883 IGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKC 914
>sp|Q5VWG9|TAF3_HUMAN Transcription initiation factor TFIID subunit 3 OS=Homo sapiens
GN=TAF3 PE=1 SV=1
Length = 929
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 145 IACDSCDLWYHAFCVGFDPEGTCEDTWLCPRC 176
I CD CD WYH CVG E W CP+C
Sbjct: 881 IGCDDCDDWYHWPCVGIMTAPPEEMQWFCPKC 912
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 6 EEQTFQVDNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNL---- 61
E T V + + D NF+C IC+D V V+ C H FC+ CI W + +
Sbjct: 30 EPITVSVPSDDTDDSNFDCN---ICLDSV-QEPVVTLCGHLFCWPCIHKWLDVQSFSTSD 85
Query: 62 -------CPLCQGEFQLITCVPVY 78
CP+C+ + T VP+Y
Sbjct: 86 EYQRHRQCPVCKSKVSHSTLVPLY 109
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 27 CGICMDVVIDRGV---LDCCQHWFCFACIDNW-STITNLCPLCQGE 68
C IC++ + + L C+H+F ACID W +T N CPLC+
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAH 811
>sp|Q12311|NTO1_YEAST NuA3 HAT complex component NTO1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NTO1 PE=1 SV=1
Length = 748
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 122 DGDGCKIRSGSMV--AEESSNLDTSIACDSCDLWYHAFCVG--FDPEGTCEDTWLCPRCV 177
DG G + V +S NL+T + CD CD+ H C G F PEG WLC RC+
Sbjct: 256 DGTGLSMDQACAVCLGTDSDNLNTIVFCDGCDIAVHQECYGIIFIPEG----KWLCRRCM 311
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 20/87 (22%)
Query: 11 QVDNTENDLLNFECG---RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITN------- 60
+++ E+D + G C IC+D V D V+ C H FC+ CI W+ +N
Sbjct: 2 EIEKDEDDTTLVDSGGDFDCNICLDQVRDP-VVTLCGHLFCWPCIHKWTYASNNSRQRVD 60
Query: 61 ---------LCPLCQGEFQLITCVPVY 78
CP+C+ + T VP+Y
Sbjct: 61 QYDHKREPPKCPVCKSDVSEATLVPIY 87
>sp|Q60764|MKRN3_MOUSE Probable E3 ubiquitin-protein ligase makorin-3 OS=Mus musculus
GN=Mkrn3 PE=2 SV=2
Length = 544
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 21/76 (27%)
Query: 12 VDNTENDL-LNFECGR-----CGICMDVVIDR--------GVLDCCQHWFCFACIDNWST 57
V+ E D+ L+F R CGICM+VV ++ G+L C H +C CI W +
Sbjct: 326 VEAHERDMELSFAVQRSMDKVCGICMEVVYEKADPSDRRFGILFSCNHTYCLRCIRRWRS 385
Query: 58 ITNL-------CPLCQ 66
T CP C+
Sbjct: 386 ATQFENRISKSCPQCR 401
>sp|P55201|BRPF1_HUMAN Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2
Length = 1214
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 17/71 (23%)
Query: 109 PSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVG--FDPEGT 166
P+ +DE+AV C+ DG E N + + CD C+L H C G + PEG
Sbjct: 266 PNALVDEDAVCCICNDG-----------ECQNSNVILFCDMCNLAVHQECYGVPYIPEG- 313
Query: 167 CEDTWLCPRCV 177
WLC RC+
Sbjct: 314 ---QWLCRRCL 321
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185
PE=2 SV=1
Length = 194
Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 13 DNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNW-STITN--LCPLCQGEF 69
DNT D FEC IC+D D V+ C H FC+ C+ W T N +CP+C+
Sbjct: 31 DNTNQDN-TFECN---ICLDTAKD-AVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGI 85
Query: 70 QLITCVPVY 78
+P+Y
Sbjct: 86 SRDKVIPLY 94
>sp|P29129|ICP0_SUHVF E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain
Indiana-Funkhauser / Becker) GN=EP0 PE=2 SV=1
Length = 410
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLC 65
C IC+DV C H FC CI W+ + CPLC
Sbjct: 46 CPICLDVAATEAQTLPCMHKFCLDCIQRWTLTSTACPLC 84
>sp|Q5EAW9|TAF3_XENLA Transcription initiation factor TFIID subunit 3 OS=Xenopus laevis
GN=taf3 PE=2 SV=1
Length = 845
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 145 IACDSCDLWYHAFCVGFDPEGTCEDTWLCPRC 176
I CD CD WYH CVG + ++ W C +C
Sbjct: 797 IGCDQCDDWYHWPCVGINAAPPEDEQWFCTKC 828
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNW-----STIT-----NLCPLCQGEFQLIT 73
C C IC+D D V+ C H FC+ CI W S+++ N CP+C+ + +
Sbjct: 41 CFDCNICLDTAHDP-VVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITS 99
Query: 74 CVPVY 78
VP+Y
Sbjct: 100 LVPLY 104
>sp|Q9LG11|HAC4_ARATH Histone acetyltransferase HAC4 OS=Arabidopsis thaliana GN=HAC4 PE=2
SV=2
Length = 1470
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 7/161 (4%)
Query: 56 STITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRGEDWSIEEKSNTLSFPSYYIDE 115
S N C LC E+ + VP+Y + I ++L ++ E + + P Y
Sbjct: 718 SMSVNSCQLCAVEWLVFEPVPIYCSPCGIRIKKNALHYS--IAVGESRHYVCAPCYNEAR 775
Query: 116 NAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDT--WLC 173
++ LDG + + + CD C+ W H C F+ ++ + C
Sbjct: 776 EKLVFLDGTSIPKTRLQKKKNDEQVPEGWVQCDKCEAWQHIICALFNSRRNHGESTKYTC 835
Query: 174 PRC-VAEVPQNSS--IDLTQSTNDQSGPENANGDHLAESLF 211
P C + EV Q + L+ S P + HL E LF
Sbjct: 836 PSCYIQEVEQRERRPLPLSAVPGATSLPVTSLSKHLEERLF 876
>sp|P47156|JHD2_YEAST Histone demethylase JHD2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=JHD2 PE=1 SV=1
Length = 728
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVP 181
D D C +V ++++ +I CDSCD +H +C+ E W+C C+
Sbjct: 234 DDDAC------IVCRKTNDPKRTILCDSCDKPFHIYCLSPPLERVPSGDWICNTCIV--- 284
Query: 182 QNSSIDLTQSTNDQSGPE 199
N TQ T+D S PE
Sbjct: 285 GNGYYGFTQDTHDYSLPE 302
>sp|P08393|ICP0_HHV11 E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 1 (strain 17)
GN=ICP0 PE=1 SV=1
Length = 775
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 27 CGICMDVVIDRGVLDC----CQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIG 82
C +C D + L C C H FC C+ W + N CPLC + VY +G
Sbjct: 116 CAVCTDEIAPH--LRCDTFPCMHRFCIPCMKTWMQLRNTCPLCNAKL-------VYLIVG 166
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1
SV=1
Length = 235
Score = 42.4 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEFQLITCVPVYDTIGS 83
C IC+D D V+ C H FC+ C+ W +CP+C+ VP+Y G
Sbjct: 26 CNICLDAAKD-AVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGGD 84
Query: 84 NN 85
++
Sbjct: 85 SS 86
>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens
GN=MKRN3 PE=1 SV=1
Length = 507
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 21/83 (25%)
Query: 12 VDNTENDL-LNFECGR-----CGICMDVVIDR--------GVLDCCQHWFCFACIDNWST 57
++ E D+ L+F R CGICM+VV ++ G+L C H FC CI W +
Sbjct: 290 IEAHEKDMELSFAVQRGMDKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRS 349
Query: 58 -------ITNLCPLCQGEFQLIT 73
I CP C+ +L+
Sbjct: 350 ARQFENRIVKSCPQCRVTSELVI 372
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 8 QTFQVDNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67
Q +V N ND+L+ E +C IC + I+ L+C H FC CI +W CP+C+
Sbjct: 364 QKEEVLNHMNDVLDNEL-QCIICSEHFIEAVTLNCA-HSFCSYCIKSWKKRKEECPICRQ 421
Query: 68 EFQLITCVPVYDTIGSNNID 87
E T V D + +D
Sbjct: 422 EIVTETRSLVLDNCIDSMVD 441
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 5 LEEQTFQVDNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPL 64
++ Q +V + NDLL E +C IC + I+ L+C H FC CI+ W CP+
Sbjct: 385 VQAQKEEVLSHMNDLLENEL-QCIICSEYFIEAVTLNCA-HSFCSFCINEWMKRKVECPI 442
Query: 65 CQGEFQLITCVPVYDTIGSNNIDGDS 90
C+ + + T V D S +D S
Sbjct: 443 CRKDIESRTNSLVLDNCISKMVDNLS 468
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 27 CGICMDVVIDRGVLDCCQHWFCFACIDNW-STITN--LCPLCQGEFQLITCVPVY 78
C IC+D D V+ C H FC+ C+ W T N +CP+C+ +P+Y
Sbjct: 39 CNICLDTAKD-AVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 92
>sp|Q96EP1|CHFR_HUMAN E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2
Length = 664
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72
C IC D++ D L C H FC AC W ++LCP C+ + I
Sbjct: 304 CIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERI 349
>sp|Q09268|YQDA_CAEEL Uncharacterized RING finger protein C32D5.10 OS=Caenorhabditis
elegans GN=C32D5.10 PE=4 SV=2
Length = 610
Score = 41.6 bits (96), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTITN--LCPLCQGEFQLI 72
C +C + +ID L C H FC+ CI W T + CP+C+ I
Sbjct: 41 CSVCKNEIIDTTSLSDCCHEFCYDCIVGWLTKGSGPFCPMCKTPVSFI 88
>sp|Q9GYI0|KDM7_CAEEL Lysine-specific demethylase 7 homolog OS=Caenorhabditis elegans
GN=F29B9.2 PE=1 SV=1
Length = 910
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 145 IACDSCDLWYHAFCVGFDP-EGTCEDTWLCPRCV 177
I CDSC WYH C G + E + + CP+CV
Sbjct: 255 IGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCV 288
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 9 TFQVDNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGE 68
TF V +ND+ EC C ++ + +L C+H F +C+D W T + CP+C+ E
Sbjct: 86 TFVV-GIKNDVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTE 144
>sp|Q13434|MKRN4_HUMAN Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens
GN=MKRN4P PE=5 SV=1
Length = 485
Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 15/55 (27%)
Query: 27 CGICMDVVIDR--------GVLDCCQHWFCFACIDNW-------STITNLCPLCQ 66
CGICM+VV ++ G+L C H FC CI W S I CP C+
Sbjct: 316 CGICMEVVYEKANPNEHRFGILSNCNHTFCLKCIRKWRSAKEFESRIVKSCPQCR 370
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 8 QTFQVDNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67
Q +V N ND+L+ E +C IC + I+ L+C H FC CI +W CP+C+
Sbjct: 359 QKEEVLNHMNDVLDNEL-QCIICSEHFIEAVTLNCA-HSFCSYCIKSWRKRKEECPICRQ 416
Query: 68 EF 69
E
Sbjct: 417 EI 418
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 41.2 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 27 CGICMDVVIDRGVLDCCQHWFCFACIDNW-STITN--LCPLCQGEFQLITCVPVY 78
C IC+D D V+ C H FC+ C+ W T N +CP+C+ +P+Y
Sbjct: 39 CNICLDTAKD-AVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLY 92
>sp|Q80TJ7|PHF8_MOUSE Histone lysine demethylase PHF8 OS=Mus musculus GN=Phf8 PE=1 SV=2
Length = 1023
Score = 41.2 bits (95), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 145 IACDSCDLWYHAFCVGFDPEGTCE-DTWLCPRCVAEVPQNSSIDLTQSTNDQSGPENANG 203
I CD C W+H CVG + E + D + CP C EV SI + + G +N G
Sbjct: 21 IECDMCQDWFHGSCVGVEEEKAADIDLYHCPNC--EVLHGPSI-MKKRRGSSKGHDNHKG 77
Query: 204 DHL--AESLFPRKVSVSVADAGETAVV 228
L S+F R++ D+ + ++
Sbjct: 78 KPLKTGSSMFIRELRGRTFDSSDEVIL 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,703,887
Number of Sequences: 539616
Number of extensions: 18939209
Number of successful extensions: 46301
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 45661
Number of HSP's gapped (non-prelim): 1027
length of query: 1225
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1096
effective length of database: 121,958,995
effective search space: 133667058520
effective search space used: 133667058520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)