Query 000915
Match_columns 1225
No_of_seqs 269 out of 2050
Neff 3.3
Searched_HMMs 46136
Date Tue Apr 2 00:43:20 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0825 PHD Zn-finger protein 99.7 2.3E-18 5.1E-23 201.6 2.3 140 24-179 123-266 (1134)
2 PHA02926 zinc finger-like prot 98.8 9.2E-10 2E-14 117.4 1.6 67 13-79 159-239 (242)
3 PHA02929 N1R/p28-like protein; 98.8 3.7E-09 8.1E-14 114.2 3.7 59 16-74 166-231 (238)
4 PF13639 zf-RING_2: Ring finge 98.6 7.6E-09 1.6E-13 84.0 0.9 42 25-66 1-44 (44)
5 PLN03208 E3 ubiquitin-protein 98.6 3.2E-08 6.9E-13 104.2 5.5 60 22-82 16-91 (193)
6 KOG1244 Predicted transcriptio 98.6 8.1E-09 1.8E-13 112.4 1.1 58 116-179 274-331 (336)
7 KOG0823 Predicted E3 ubiquitin 98.6 3.5E-08 7.7E-13 105.8 3.4 62 21-83 44-108 (230)
8 KOG0317 Predicted E3 ubiquitin 98.5 4.2E-08 9.2E-13 107.8 2.8 53 19-72 234-286 (293)
9 PF12678 zf-rbx1: RING-H2 zinc 98.5 6.5E-08 1.4E-12 87.3 2.6 45 22-66 17-73 (73)
10 PF13923 zf-C3HC4_2: Zinc fing 98.4 1.4E-07 3E-12 75.3 1.7 39 27-65 1-39 (39)
11 PF13920 zf-C3HC4_3: Zinc fing 98.4 1.8E-07 3.8E-12 78.1 2.1 48 23-71 1-49 (50)
12 cd00162 RING RING-finger (Real 98.3 2.8E-07 6.1E-12 71.6 2.7 44 26-69 1-45 (45)
13 PF00628 PHD: PHD-finger; Int 98.3 1.1E-07 2.3E-12 79.0 -0.0 47 125-177 1-49 (51)
14 PF15227 zf-C3HC4_4: zinc fing 98.3 3.9E-07 8.4E-12 74.8 2.3 38 27-65 1-42 (42)
15 smart00504 Ubox Modified RING 98.2 7E-07 1.5E-11 76.2 2.9 46 25-71 2-47 (63)
16 KOG0320 Predicted E3 ubiquitin 98.2 5.1E-07 1.1E-11 94.2 2.0 50 22-71 129-179 (187)
17 TIGR00599 rad18 DNA repair pro 98.1 1.1E-06 2.3E-11 101.2 3.0 49 22-71 24-72 (397)
18 PF00097 zf-C3HC4: Zinc finger 98.1 1.1E-06 2.4E-11 70.0 1.9 39 27-65 1-41 (41)
19 smart00249 PHD PHD zinc finger 98.1 1.9E-06 4.1E-11 68.1 3.2 46 125-176 1-47 (47)
20 KOG4628 Predicted E3 ubiquitin 98.1 9.9E-07 2.1E-11 99.9 2.0 47 25-71 230-279 (348)
21 KOG4443 Putative transcription 98.1 1.5E-06 3.3E-11 103.5 2.4 56 118-179 63-118 (694)
22 PF12861 zf-Apc11: Anaphase-pr 98.0 2.4E-06 5.2E-11 80.3 2.6 49 23-71 20-83 (85)
23 KOG0287 Postreplication repair 98.0 1.9E-06 4.1E-11 96.7 1.1 48 23-71 22-69 (442)
24 KOG1512 PHD Zn-finger protein 98.0 2.7E-06 5.8E-11 93.8 1.5 55 117-179 308-363 (381)
25 PF14634 zf-RING_5: zinc-RING 97.9 5.3E-06 1.1E-10 68.1 2.8 42 26-67 1-44 (44)
26 KOG2177 Predicted E3 ubiquitin 97.9 4.3E-06 9.2E-11 84.5 1.8 45 22-67 11-55 (386)
27 COG5432 RAD18 RING-finger-cont 97.9 4.8E-06 1E-10 92.0 1.8 50 23-73 24-73 (391)
28 smart00184 RING Ring finger. E 97.9 7.7E-06 1.7E-10 61.4 2.3 38 27-65 1-39 (39)
29 COG5243 HRD1 HRD ubiquitin lig 97.9 8.2E-06 1.8E-10 92.6 3.3 51 21-71 284-346 (491)
30 COG5540 RING-finger-containing 97.8 7.1E-06 1.5E-10 91.3 2.2 47 24-70 323-372 (374)
31 COG5194 APC11 Component of SCF 97.8 8E-06 1.7E-10 76.2 1.7 49 24-72 20-83 (88)
32 KOG1973 Chromatin remodeling p 97.8 7.8E-06 1.7E-10 90.0 1.7 36 142-179 230-268 (274)
33 KOG4299 PHD Zn-finger protein 97.8 6.3E-06 1.4E-10 98.2 0.9 51 124-180 254-306 (613)
34 KOG4323 Polycomb-like PHD Zn-f 97.8 1.8E-05 4E-10 92.4 4.5 51 126-180 171-225 (464)
35 KOG2164 Predicted E3 ubiquitin 97.8 1.1E-05 2.4E-10 94.5 2.3 47 24-71 186-237 (513)
36 cd04718 BAH_plant_2 BAH, or Br 97.7 2.3E-05 4.9E-10 80.3 3.4 29 153-181 1-29 (148)
37 KOG0802 E3 ubiquitin ligase [P 97.7 9.1E-06 2E-10 96.5 0.5 50 20-69 287-340 (543)
38 COG5574 PEX10 RING-finger-cont 97.7 1.4E-05 3.1E-10 87.6 1.7 49 22-71 213-263 (271)
39 KOG0955 PHD finger protein BR1 97.6 3E-05 6.6E-10 97.6 3.6 53 121-179 217-269 (1051)
40 PF04564 U-box: U-box domain; 97.6 2.7E-05 5.8E-10 70.2 2.1 50 23-73 3-53 (73)
41 KOG0383 Predicted helicase [Ge 97.6 3E-05 6.5E-10 94.5 2.4 47 124-179 48-94 (696)
42 KOG1039 Predicted E3 ubiquitin 97.5 5.3E-05 1.1E-09 86.3 2.2 53 21-73 158-224 (344)
43 KOG0978 E3 ubiquitin ligase in 97.4 4E-05 8.7E-10 93.2 0.7 49 24-73 643-692 (698)
44 KOG1245 Chromatin remodeling c 97.4 3.2E-05 6.9E-10 100.2 -0.4 51 123-179 1108-1158(1404)
45 TIGR00570 cdk7 CDK-activating 97.4 0.00013 2.7E-09 82.2 3.7 50 24-73 3-57 (309)
46 KOG2930 SCF ubiquitin ligase, 97.3 5.3E-05 1.2E-09 73.7 0.2 51 21-71 43-109 (114)
47 PF13445 zf-RING_UBOX: RING-ty 97.2 0.0001 2.2E-09 61.5 1.0 36 27-63 1-43 (43)
48 KOG4265 Predicted E3 ubiquitin 97.2 0.00014 3.1E-09 82.6 2.4 69 2-72 265-338 (349)
49 KOG1493 Anaphase-promoting com 97.2 6.2E-05 1.4E-09 69.9 -0.9 50 22-71 18-82 (84)
50 COG5034 TNG2 Chromatin remodel 97.2 0.00014 3.1E-09 79.7 1.5 36 141-178 231-269 (271)
51 KOG0956 PHD finger protein AF1 97.2 0.0002 4.4E-09 86.2 2.7 109 124-246 6-125 (900)
52 KOG0311 Predicted E3 ubiquitin 97.2 4.7E-05 1E-09 86.3 -2.5 48 23-70 42-90 (381)
53 PF14835 zf-RING_6: zf-RING of 97.1 0.00022 4.7E-09 64.6 1.7 45 24-70 7-51 (65)
54 COG5141 PHD zinc finger-contai 97.0 0.00017 3.7E-09 84.3 0.6 51 123-179 193-243 (669)
55 KOG0954 PHD finger protein [Ge 96.9 0.00032 7E-09 85.1 0.8 109 122-242 270-384 (893)
56 KOG0828 Predicted E3 ubiquitin 96.8 0.00042 9.2E-09 81.3 1.3 49 22-70 569-634 (636)
57 COG5219 Uncharacterized conser 96.8 0.00039 8.5E-09 85.9 0.6 50 22-71 1467-1524(1525)
58 KOG4172 Predicted E3 ubiquitin 96.4 0.00071 1.5E-08 59.8 -0.2 47 25-72 8-56 (62)
59 KOG2879 Predicted E3 ubiquitin 96.3 0.0029 6.3E-08 70.4 3.8 55 19-73 234-290 (298)
60 KOG0804 Cytoplasmic Zn-finger 96.3 0.0015 3.2E-08 76.3 1.6 46 21-68 172-220 (493)
61 KOG2660 Locus-specific chromos 96.2 0.00087 1.9E-08 75.8 -1.1 50 24-73 15-64 (331)
62 KOG4159 Predicted E3 ubiquitin 96.2 0.0025 5.4E-08 74.3 2.1 49 22-71 82-130 (398)
63 KOG0297 TNF receptor-associate 96.0 0.0032 7E-08 72.9 2.4 55 22-76 19-73 (391)
64 KOG0824 Predicted E3 ubiquitin 96.0 0.0031 6.6E-08 71.0 1.9 47 24-71 7-54 (324)
65 PF11793 FANCL_C: FANCL C-term 95.9 0.002 4.3E-08 58.4 -0.2 48 24-71 2-67 (70)
66 KOG0827 Predicted E3 ubiquitin 95.9 0.0032 7E-08 72.6 1.3 44 25-68 5-54 (465)
67 KOG1734 Predicted RING-contain 95.6 0.0041 8.8E-08 69.2 0.8 50 22-71 222-282 (328)
68 KOG0957 PHD finger protein [Ge 95.6 0.0063 1.4E-07 71.9 2.4 49 125-179 546-598 (707)
69 PF13831 PHD_2: PHD-finger; PD 95.5 0.002 4.3E-08 52.2 -1.6 34 142-177 2-36 (36)
70 KOG1785 Tyrosine kinase negati 95.3 0.0077 1.7E-07 69.7 1.7 49 25-74 370-420 (563)
71 smart00744 RINGv The RING-vari 95.1 0.012 2.5E-07 50.4 1.8 41 26-66 1-49 (49)
72 PF11789 zf-Nse: Zinc-finger o 94.9 0.013 2.8E-07 51.7 1.6 42 23-64 10-53 (57)
73 KOG4692 Predicted E3 ubiquitin 94.9 0.01 2.2E-07 68.0 1.1 54 17-71 415-468 (489)
74 PHA03096 p28-like protein; Pro 94.5 0.014 3E-07 65.7 1.1 44 25-68 179-232 (284)
75 KOG1813 Predicted E3 ubiquitin 94.5 0.017 3.6E-07 65.2 1.5 47 24-71 241-287 (313)
76 COG5152 Uncharacterized conser 93.5 0.026 5.7E-07 60.8 0.7 46 24-70 196-241 (259)
77 KOG4275 Predicted E3 ubiquitin 93.5 0.016 3.5E-07 65.2 -0.9 43 24-71 300-343 (350)
78 KOG4299 PHD Zn-finger protein 93.5 0.075 1.6E-06 64.7 4.4 148 26-179 255-444 (613)
79 PF04641 Rtf2: Rtf2 RING-finge 93.4 0.066 1.4E-06 59.0 3.6 55 21-76 110-167 (260)
80 KOG1002 Nucleotide excision re 93.3 0.028 6.2E-07 67.0 0.6 49 22-71 534-587 (791)
81 COG5222 Uncharacterized conser 92.8 0.049 1.1E-06 61.6 1.5 43 25-67 275-318 (427)
82 KOG1645 RING-finger-containing 92.7 0.037 8.1E-07 64.6 0.6 47 24-70 4-56 (463)
83 KOG0826 Predicted E3 ubiquitin 91.6 0.092 2E-06 60.1 1.9 47 22-68 298-344 (357)
84 KOG1473 Nucleosome remodeling 91.6 0.027 5.9E-07 71.7 -2.4 129 20-179 340-479 (1414)
85 PF15446 zf-PHD-like: PHD/FYVE 91.5 0.088 1.9E-06 55.7 1.4 52 125-179 1-60 (175)
86 COG5236 Uncharacterized conser 91.5 0.15 3.2E-06 58.9 3.2 59 14-73 51-111 (493)
87 KOG4739 Uncharacterized protei 90.9 0.11 2.4E-06 57.2 1.7 48 25-74 4-52 (233)
88 KOG1814 Predicted E3 ubiquitin 90.3 0.02 4.4E-07 66.8 -4.8 46 22-67 182-237 (445)
89 PHA02825 LAP/PHD finger-like p 90.0 0.27 5.8E-06 51.8 3.4 52 20-73 4-62 (162)
90 KOG1941 Acetylcholine receptor 89.9 0.11 2.3E-06 60.7 0.4 48 23-70 364-416 (518)
91 KOG1952 Transcription factor N 89.9 0.12 2.6E-06 64.8 0.8 50 21-70 188-247 (950)
92 KOG3039 Uncharacterized conser 89.8 0.26 5.5E-06 55.0 3.2 50 22-71 219-271 (303)
93 KOG4445 Uncharacterized conser 89.3 0.085 1.8E-06 59.9 -0.9 48 24-71 115-187 (368)
94 PF14570 zf-RING_4: RING/Ubox 88.9 0.31 6.7E-06 42.4 2.4 44 27-70 1-48 (48)
95 KOG1473 Nucleosome remodeling 88.5 0.24 5.2E-06 63.7 2.0 49 122-179 343-391 (1414)
96 PHA02862 5L protein; Provision 87.1 0.36 7.8E-06 50.3 2.0 48 24-73 2-56 (156)
97 COG5175 MOT2 Transcriptional r 86.9 0.29 6.2E-06 56.5 1.4 49 23-71 13-65 (480)
98 KOG1246 DNA-binding protein ju 86.8 0.61 1.3E-05 59.7 4.3 105 122-235 154-274 (904)
99 KOG4185 Predicted E3 ubiquitin 86.8 0.36 7.9E-06 53.4 2.1 45 25-69 4-54 (296)
100 KOG2932 E3 ubiquitin ligase in 86.4 0.28 6.2E-06 56.0 1.0 46 26-73 92-137 (389)
101 KOG0298 DEAD box-containing he 86.3 0.17 3.7E-06 65.7 -0.8 46 22-67 1151-1196(1394)
102 PF07800 DUF1644: Protein of u 86.1 0.54 1.2E-05 49.6 2.7 51 23-74 1-95 (162)
103 KOG1428 Inhibitor of type V ad 86.0 0.38 8.3E-06 62.8 1.9 54 21-74 3483-3548(3738)
104 KOG0957 PHD finger protein [Ge 85.6 0.37 8E-06 57.8 1.4 53 124-180 120-180 (707)
105 KOG1001 Helicase-like transcri 85.3 0.38 8.3E-06 59.9 1.4 45 25-71 455-501 (674)
106 PF10367 Vps39_2: Vacuolar sor 85.1 0.37 8.1E-06 44.9 0.9 32 22-53 76-108 (109)
107 KOG4443 Putative transcription 84.9 0.26 5.6E-06 60.6 -0.3 54 122-179 17-71 (694)
108 KOG0956 PHD finger protein AF1 84.9 0.56 1.2E-05 58.1 2.4 29 43-71 46-74 (900)
109 PF07227 DUF1423: Protein of u 83.6 0.84 1.8E-05 54.5 3.1 52 125-179 130-192 (446)
110 KOG0383 Predicted helicase [Ge 83.5 1.1 2.3E-05 56.3 4.1 37 143-179 188-224 (696)
111 KOG2114 Vacuolar assembly/sort 82.2 0.47 1E-05 59.8 0.4 46 22-70 838-883 (933)
112 PF14447 Prok-RING_4: Prokaryo 82.0 0.74 1.6E-05 41.2 1.4 44 25-71 8-51 (55)
113 KOG1571 Predicted E3 ubiquitin 81.3 0.62 1.3E-05 54.2 0.9 46 22-71 303-348 (355)
114 KOG0825 PHD Zn-finger protein 80.5 0.64 1.4E-05 58.2 0.7 54 22-75 94-159 (1134)
115 PF05290 Baculo_IE-1: Baculovi 77.0 1.2 2.7E-05 46.0 1.4 48 24-71 80-133 (140)
116 PF02891 zf-MIZ: MIZ/SP-RING z 75.5 1.2 2.6E-05 38.5 0.8 42 25-67 3-49 (50)
117 KOG3268 Predicted E3 ubiquitin 74.3 1.6 3.5E-05 47.0 1.5 49 23-71 164-229 (234)
118 PF14446 Prok-RING_1: Prokaryo 72.5 1.9 4.2E-05 38.5 1.3 35 123-162 5-39 (54)
119 KOG3970 Predicted E3 ubiquitin 71.9 2.4 5.1E-05 47.2 2.1 47 23-69 49-104 (299)
120 PF08746 zf-RING-like: RING-li 71.2 3.1 6.7E-05 35.1 2.2 39 27-65 1-43 (43)
121 KOG3053 Uncharacterized conser 69.4 1.7 3.8E-05 48.9 0.4 50 23-72 19-84 (293)
122 KOG3579 Predicted E3 ubiquitin 68.2 2.1 4.5E-05 48.9 0.7 43 21-64 265-316 (352)
123 PF12906 RINGv: RING-variant d 67.2 2.5 5.4E-05 36.1 0.8 39 27-65 1-47 (47)
124 KOG1100 Predicted E3 ubiquitin 67.2 3.3 7.1E-05 45.2 1.9 40 27-71 161-201 (207)
125 KOG1701 Focal adhesion adaptor 66.5 2.1 4.4E-05 51.1 0.3 43 22-67 300-342 (468)
126 KOG3002 Zn finger protein [Gen 65.9 3.5 7.7E-05 47.3 2.0 51 20-73 44-94 (299)
127 KOG3800 Predicted E3 ubiquitin 65.3 3.9 8.4E-05 46.9 2.1 46 26-71 2-52 (300)
128 COG5220 TFB3 Cdk activating ki 65.1 1.8 3.9E-05 48.4 -0.5 52 20-71 6-65 (314)
129 PF10272 Tmpp129: Putative tra 62.5 7.4 0.00016 45.8 3.8 52 20-71 267-352 (358)
130 KOG4718 Non-SMC (structural ma 60.3 4.2 9.2E-05 44.9 1.2 47 25-71 182-228 (235)
131 KOG4367 Predicted Zn-finger pr 59.8 3.9 8.4E-05 48.9 0.9 33 23-56 3-35 (699)
132 PF05883 Baculo_RING: Baculovi 59.3 5.3 0.00011 41.4 1.7 41 24-64 26-74 (134)
133 KOG1940 Zn-finger protein [Gen 58.9 5.8 0.00013 45.2 2.1 44 24-67 158-204 (276)
134 KOG1973 Chromatin remodeling p 57.5 3.8 8.3E-05 46.1 0.4 46 23-68 218-268 (274)
135 COG5183 SSM4 Protein involved 56.6 7.1 0.00015 49.8 2.4 57 17-73 5-69 (1175)
136 KOG2034 Vacuolar sorting prote 56.1 4.7 0.0001 51.7 0.8 34 22-55 815-849 (911)
137 PF03854 zf-P11: P-11 zinc fin 55.4 6 0.00013 35.0 1.1 43 26-70 4-46 (50)
138 KOG4628 Predicted E3 ubiquitin 54.1 5.8 0.00013 46.5 1.1 48 124-180 230-277 (348)
139 KOG0955 PHD finger protein BR1 54.1 9.7 0.00021 50.1 3.1 42 823-865 956-997 (1051)
140 KOG3161 Predicted E3 ubiquitin 51.8 5.1 0.00011 49.9 0.2 40 22-63 9-51 (861)
141 KOG1632 Uncharacterized PHD Zn 51.4 7.5 0.00016 45.4 1.4 38 143-180 74-114 (345)
142 smart00249 PHD PHD zinc finger 49.5 9.4 0.0002 30.1 1.3 40 26-65 1-47 (47)
143 KOG1512 PHD Zn-finger protein 49.1 4.9 0.00011 46.1 -0.5 55 124-178 259-316 (381)
144 KOG4362 Transcriptional regula 48.4 5.8 0.00013 49.9 -0.0 47 23-70 20-69 (684)
145 PRK14559 putative protein seri 48.4 17 0.00036 45.9 3.8 48 124-179 2-50 (645)
146 PF00628 PHD: PHD-finger; Int 48.3 4.3 9.4E-05 33.9 -0.8 41 26-66 1-49 (51)
147 KOG1815 Predicted E3 ubiquitin 46.1 14 0.00031 44.0 2.6 29 38-67 179-207 (444)
148 KOG0824 Predicted E3 ubiquitin 45.9 6.5 0.00014 45.4 -0.2 56 16-71 97-152 (324)
149 PLN02400 cellulose synthase 44.8 15 0.00033 48.5 2.8 54 121-179 34-87 (1085)
150 KOG3899 Uncharacterized conser 44.6 13 0.00029 42.9 2.0 29 43-71 325-366 (381)
151 KOG0309 Conserved WD40 repeat- 44.5 12 0.00027 47.4 1.9 39 26-64 1030-1069(1081)
152 PF12861 zf-Apc11: Anaphase-pr 44.4 9.2 0.0002 37.1 0.6 32 147-179 49-80 (85)
153 KOG1812 Predicted E3 ubiquitin 43.6 11 0.00023 44.7 1.1 48 23-70 145-203 (384)
154 KOG1844 PHD Zn-finger proteins 43.4 13 0.00029 44.2 1.9 39 141-180 98-136 (508)
155 PF11793 FANCL_C: FANCL C-term 43.0 15 0.00032 33.8 1.7 53 124-179 3-64 (70)
156 PF13901 DUF4206: Domain of un 42.9 23 0.00049 38.4 3.4 52 118-179 146-198 (202)
157 PLN02436 cellulose synthase A 42.8 17 0.00036 48.0 2.7 54 121-179 34-87 (1094)
158 KOG2817 Predicted E3 ubiquitin 42.6 15 0.00032 43.8 2.0 47 23-69 333-384 (394)
159 PLN02638 cellulose synthase A 42.3 15 0.00033 48.5 2.2 53 122-179 16-68 (1079)
160 COG5574 PEX10 RING-finger-cont 41.6 16 0.00035 41.7 2.0 35 23-57 94-132 (271)
161 PLN02189 cellulose synthase 40.5 19 0.00042 47.4 2.8 53 21-73 31-90 (1040)
162 PF14569 zf-UDP: Zinc-binding 39.5 6.8 0.00015 37.5 -1.0 53 122-179 8-60 (80)
163 KOG0954 PHD finger protein [Ge 38.9 12 0.00027 47.4 0.7 46 23-68 270-321 (893)
164 PLN02638 cellulose synthase A 38.7 27 0.00059 46.2 3.6 54 20-73 13-73 (1079)
165 KOG1812 Predicted E3 ubiquitin 37.8 17 0.00036 43.1 1.5 43 22-65 304-351 (384)
166 PHA02929 N1R/p28-like protein; 36.6 17 0.00036 40.9 1.2 53 122-179 173-225 (238)
167 KOG1815 Predicted E3 ubiquitin 35.9 17 0.00038 43.4 1.3 37 22-58 68-104 (444)
168 PF14569 zf-UDP: Zinc-binding 35.8 27 0.00059 33.7 2.3 51 22-72 7-64 (80)
169 KOG1734 Predicted RING-contain 35.6 8.4 0.00018 44.0 -1.2 57 121-180 222-280 (328)
170 KOG0827 Predicted E3 ubiquitin 35.5 4.2 9.1E-05 48.2 -3.7 51 23-73 195-248 (465)
171 PF07975 C1_4: TFIIH C1-like d 35.0 34 0.00073 30.5 2.5 40 27-66 2-50 (51)
172 PLN02915 cellulose synthase A 34.6 25 0.00054 46.4 2.4 53 122-179 14-66 (1044)
173 KOG2932 E3 ubiquitin ligase in 34.3 19 0.00042 42.0 1.2 34 143-179 89-132 (389)
174 PF04216 FdhE: Protein involve 34.3 11 0.00024 42.3 -0.5 46 24-70 172-222 (290)
175 TIGR00622 ssl1 transcription f 34.2 27 0.00058 35.5 2.1 42 25-66 56-110 (112)
176 KOG1609 Protein involved in mR 33.9 20 0.00043 39.6 1.2 49 24-72 78-136 (323)
177 KOG2068 MOT2 transcription fac 33.8 29 0.00062 40.7 2.5 49 23-71 248-299 (327)
178 PF08746 zf-RING-like: RING-li 33.4 11 0.00024 31.9 -0.6 41 126-176 1-43 (43)
179 PLN02400 cellulose synthase 33.4 26 0.00056 46.4 2.3 53 21-73 33-92 (1085)
180 PF05199 GMC_oxred_C: GMC oxid 32.5 20 0.00042 35.0 0.8 22 674-695 114-135 (144)
181 PLN02436 cellulose synthase A 32.4 28 0.00061 46.1 2.3 53 21-73 33-92 (1094)
182 KOG3039 Uncharacterized conser 32.2 24 0.00052 40.1 1.5 31 25-56 44-74 (303)
183 PLN02189 cellulose synthase 32.2 30 0.00066 45.7 2.6 53 122-179 33-85 (1040)
184 PLN02195 cellulose synthase A 31.8 30 0.00066 45.4 2.5 53 122-179 5-57 (977)
185 PF08369 PCP_red: Proto-chloro 31.8 39 0.00085 29.1 2.4 27 843-870 10-36 (45)
186 KOG0269 WD40 repeat-containing 31.4 32 0.0007 44.0 2.6 51 21-71 776-829 (839)
187 KOG3799 Rab3 effector RIM1 and 31.4 20 0.00043 37.6 0.7 46 24-73 65-121 (169)
188 KOG1829 Uncharacterized conser 29.9 17 0.00038 45.2 0.0 40 23-65 510-556 (580)
189 COG5432 RAD18 RING-finger-cont 29.6 14 0.00031 42.6 -0.7 42 124-179 26-68 (391)
190 PF07191 zinc-ribbons_6: zinc- 29.3 14 0.00031 34.8 -0.7 43 25-73 2-44 (70)
191 PF14805 THDPS_N_2: Tetrahydro 29.3 89 0.0019 29.4 4.4 44 537-602 1-44 (70)
192 PF13922 PHD_3: PHD domain of 28.7 13 0.00028 34.8 -1.0 21 143-163 42-62 (69)
193 KOG1632 Uncharacterized PHD Zn 28.6 11 0.00025 43.9 -1.8 52 123-179 239-295 (345)
194 KOG3113 Uncharacterized conser 28.5 40 0.00087 38.6 2.4 49 22-72 109-160 (293)
195 PLN02915 cellulose synthase A 28.1 50 0.0011 43.9 3.5 52 21-72 12-70 (1044)
196 PF10235 Cript: Microtubule-as 27.1 37 0.00081 33.4 1.7 36 24-69 44-79 (90)
197 KOG4323 Polycomb-like PHD Zn-f 26.7 27 0.00059 42.5 0.9 52 22-73 166-229 (464)
198 PRK03564 formate dehydrogenase 26.5 51 0.0011 38.4 2.9 45 123-179 187-235 (309)
199 PRK14873 primosome assembly pr 26.2 42 0.0009 42.6 2.3 27 517-545 619-645 (665)
200 PF05502 Dynactin_p62: Dynacti 25.9 36 0.00078 41.6 1.6 33 144-181 5-37 (483)
201 PF15446 zf-PHD-like: PHD/FYVE 25.8 45 0.00097 36.2 2.1 23 141-163 121-143 (175)
202 PF10497 zf-4CXXC_R1: Zinc-fin 25.8 57 0.0012 32.4 2.7 27 44-70 37-72 (105)
203 TIGR01562 FdhE formate dehydro 25.3 27 0.00058 40.5 0.4 44 24-68 184-233 (305)
204 TIGR01562 FdhE formate dehydro 25.1 58 0.0013 37.9 3.0 45 123-179 184-233 (305)
205 KOG1356 Putative transcription 24.4 25 0.00054 45.4 -0.0 48 23-70 228-282 (889)
206 PF10497 zf-4CXXC_R1: Zinc-fin 24.1 30 0.00066 34.3 0.5 31 148-178 31-69 (105)
207 PF12773 DZR: Double zinc ribb 23.8 86 0.0019 26.4 3.1 10 170-179 29-38 (50)
208 PRK03564 formate dehydrogenase 23.7 33 0.00072 39.9 0.8 44 23-67 186-234 (309)
209 PF14446 Prok-RING_1: Prokaryo 23.6 61 0.0013 29.4 2.2 44 23-70 4-52 (54)
210 TIGR00595 priA primosomal prot 22.7 65 0.0014 39.4 3.0 10 170-179 253-262 (505)
211 KOG2114 Vacuolar assembly/sort 22.0 36 0.00078 44.1 0.6 41 124-179 841-881 (933)
212 PF13901 DUF4206: Domain of un 21.9 61 0.0013 35.2 2.3 40 22-66 150-196 (202)
213 COG5141 PHD zinc finger-contai 21.5 44 0.00094 41.2 1.2 21 142-162 314-336 (669)
214 PF10367 Vps39_2: Vacuolar sor 21.4 61 0.0013 30.3 1.9 33 121-160 76-108 (109)
215 PF15296 Codanin-1_C: Codanin- 20.9 1.1E+02 0.0024 31.5 3.7 41 833-875 48-88 (121)
216 KOG4218 Nuclear hormone recept 20.7 33 0.00071 40.7 -0.0 46 23-68 14-76 (475)
217 KOG1829 Uncharacterized conser 20.0 32 0.0007 43.0 -0.3 55 117-179 504-559 (580)
No 1
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.71 E-value=2.3e-18 Score=201.65 Aligned_cols=140 Identities=24% Similarity=0.510 Sum_probs=97.1
Q ss_pred cccccccccccccc--ceecCCCCcccHhHHhhhcccCCCCCCccccccceeecccccCCCC-CcccCccccCCCccchh
Q 000915 24 CGRCGICMDVVIDR--GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGS-NNIDGDSLSRGEDWSIE 100 (1225)
Q Consensus 24 d~tCpICLE~fsD~--~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I~~vPvyD~iG~-eiVdn~pLrrRdD~~sE 100 (1225)
...|++|+..+.+. ....+|.|+||..||..|.+....||+||..|..+.. .+..+. ..+..+++...... ++
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V---~eS~~~~~~vR~lP~EEs~~~-~e 198 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKV---LESTGIEANVRCLPSEESENI-LE 198 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeee---eccccccceeEecchhhhhhh-hh
Confidence 35688888877654 3445799999999999999999999999999998663 333333 44444444221110 00
Q ss_pred hcccCCCCCCcccCcccccccCCCCCCCCCCCCccccCCCcccccccCCCCcc-ccccccCCCCCCCCCCcccCCCCCCC
Q 000915 101 EKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLW-YHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 101 EEDQTlSfPS~yIDEe~viC~D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~a-YH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
. -..+....+.+...+.| .|.||+ -.+.+++||+||+|+.+ ||+|||+|++.++|.+.|||+.|.-.
T Consensus 199 -~-~~d~~~d~~~~~~~E~~----~C~IC~------~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 199 -K-GGDEKQDQISGLSQEEV----KCDICT------VHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred -h-ccccccccccCcccccc----cceeec------cCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 0 00000111222233333 799994 34577899999999999 99999999999999999999999665
No 2
>PHA02926 zinc finger-like protein; Provisional
Probab=98.83 E-value=9.2e-10 Score=117.42 Aligned_cols=67 Identities=37% Similarity=0.850 Sum_probs=55.2
Q ss_pred CCCcccccCccccccccccccccc--------cceecCCCCcccHhHHhhhccc------CCCCCCccccccceeecccc
Q 000915 13 DNTENDLLNFECGRCGICMDVVID--------RGVLDCCQHWFCFACIDNWSTI------TNLCPLCQGEFQLITCVPVY 78 (1225)
Q Consensus 13 D~~edDssssEd~tCpICLE~fsD--------~~vL~pCgHtFC~~CIqqWlK~------knSCPLCRaeFs~I~~vPvy 78 (1225)
+.+++....+.+..|+||++.+.+ .+.+++|+|.||..||..|... ...||+||..|.++...++|
T Consensus 159 ~~ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 159 DKYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred HHHHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 456888888999999999998643 2678899999999999999864 35699999999988766555
Q ss_pred c
Q 000915 79 D 79 (1225)
Q Consensus 79 D 79 (1225)
.
T Consensus 239 ~ 239 (242)
T PHA02926 239 K 239 (242)
T ss_pred e
Confidence 3
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.77 E-value=3.7e-09 Score=114.15 Aligned_cols=59 Identities=37% Similarity=0.843 Sum_probs=48.2
Q ss_pred cccccCcccccccccccccccc-------ceecCCCCcccHhHHhhhcccCCCCCCccccccceee
Q 000915 16 ENDLLNFECGRCGICMDVVIDR-------GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITC 74 (1225)
Q Consensus 16 edDssssEd~tCpICLE~fsD~-------~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I~~ 74 (1225)
+.......+..|+||++.+.+. +++.+|+|.||..||.+|.+....||+||..|..+..
T Consensus 166 e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 166 EKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred hhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 3333445578999999987643 4677899999999999999999999999999987664
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.64 E-value=7.6e-09 Score=84.03 Aligned_cols=42 Identities=33% Similarity=0.821 Sum_probs=35.3
Q ss_pred ccccccccccc--ccceecCCCCcccHhHHhhhcccCCCCCCcc
Q 000915 25 GRCGICMDVVI--DRGVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (1225)
Q Consensus 25 ~tCpICLE~fs--D~~vL~pCgHtFC~~CIqqWlK~knSCPLCR 66 (1225)
+.|+||++.+. +.....+|+|.||..||..|++....||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999984 3456667999999999999999999999997
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.63 E-value=3.2e-08 Score=104.19 Aligned_cols=60 Identities=35% Similarity=0.781 Sum_probs=50.0
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhhhcc----------------cCCCCCCccccccceeecccccCCC
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST----------------ITNLCPLCQGEFQLITCVPVYDTIG 82 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK----------------~knSCPLCRaeFs~I~~vPvyD~iG 82 (1225)
.++..|+||++.+.+ +++.+|+|.||..||..|.. ....||+||..+.....+|+|....
T Consensus 16 ~~~~~CpICld~~~d-PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~ 91 (193)
T PLN03208 16 GGDFDCNICLDQVRD-PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQ 91 (193)
T ss_pred CCccCCccCCCcCCC-cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCC
Confidence 356899999999988 46677999999999999963 2357999999999888888887654
No 6
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.63 E-value=8.1e-09 Score=112.45 Aligned_cols=58 Identities=31% Similarity=0.641 Sum_probs=50.7
Q ss_pred ccccccCCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 116 NAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 116 e~viC~D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
..+.|+++..|.|||.+ ++.|++||||.||++||+|||.||+...|+|.|-|.-|...
T Consensus 274 yrwqcieck~csicgts------enddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 274 YRWQCIECKYCSICGTS------ENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred heeeeeecceeccccCc------CCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 34678888999999654 46679999999999999999999999999999999999654
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.5e-08 Score=105.78 Aligned_cols=62 Identities=32% Similarity=0.801 Sum_probs=53.4
Q ss_pred CccccccccccccccccceecCCCCcccHhHHhhhccc---CCCCCCccccccceeecccccCCCC
Q 000915 21 NFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEFQLITCVPVYDTIGS 83 (1225)
Q Consensus 21 ssEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~---knSCPLCRaeFs~I~~vPvyD~iG~ 83 (1225)
....+.|-|||+..++ +++..|||.||+.||.+|+.. ...||+|+..+..-..+|+|.+...
T Consensus 44 ~~~~FdCNICLd~akd-PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~ 108 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD-PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGSK 108 (230)
T ss_pred CCCceeeeeeccccCC-CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCCC
Confidence 4556889999999999 577779999999999999965 5569999999999999999987653
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.2e-08 Score=107.83 Aligned_cols=53 Identities=28% Similarity=0.758 Sum_probs=45.9
Q ss_pred ccCccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccccce
Q 000915 19 LLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72 (1225)
Q Consensus 19 ssssEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I 72 (1225)
+.......|.+|++...+ +...||||.||..||..|...+..||+||..|+.-
T Consensus 234 ~i~~a~~kC~LCLe~~~~-pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSN-PSATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred cCCCCCCceEEEecCCCC-CCcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 334556889999999887 67888999999999999999989999999998853
No 9
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.48 E-value=6.5e-08 Score=87.32 Aligned_cols=45 Identities=38% Similarity=0.857 Sum_probs=36.6
Q ss_pred cccccccccccccccc------------ceecCCCCcccHhHHhhhcccCCCCCCcc
Q 000915 22 FECGRCGICMDVVIDR------------GVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~------------~vL~pCgHtFC~~CIqqWlK~knSCPLCR 66 (1225)
..++.|+||++.+.+. .....|+|.||..||.+|++....||+||
T Consensus 17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 17 IADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3456799999999432 34557999999999999999999999997
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.37 E-value=1.4e-07 Score=75.27 Aligned_cols=39 Identities=38% Similarity=0.940 Sum_probs=34.2
Q ss_pred cccccccccccceecCCCCcccHhHHhhhcccCCCCCCc
Q 000915 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLC 65 (1225)
Q Consensus 27 CpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLC 65 (1225)
|+||++.+.++.+..+|||.||..||.+|.+....||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999999866788999999999999999888899998
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.36 E-value=1.8e-07 Score=78.13 Aligned_cols=48 Identities=31% Similarity=0.672 Sum_probs=40.3
Q ss_pred cccccccccccccccceecCCCCc-ccHhHHhhhcccCCCCCCccccccc
Q 000915 23 ECGRCGICMDVVIDRGVLDCCQHW-FCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~~vL~pCgHt-FC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
++..|.||++...+ ..+.+|+|. ||..|+..|......||+||+.+..
T Consensus 1 ~~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENPRD-VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSBSS-EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CcCCCccCCccCCc-eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 35789999999877 577789999 9999999999999999999998764
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.34 E-value=2.8e-07 Score=71.65 Aligned_cols=44 Identities=41% Similarity=0.951 Sum_probs=38.0
Q ss_pred ccccccccccccceecCCCCcccHhHHhhhccc-CCCCCCccccc
Q 000915 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEF 69 (1225)
Q Consensus 26 tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~-knSCPLCRaeF 69 (1225)
.|+||++.+.....+.+|+|.||..|+..|... ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999999666677779999999999999987 77899998753
No 13
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.32 E-value=1.1e-07 Score=79.04 Aligned_cols=47 Identities=36% Similarity=0.858 Sum_probs=38.2
Q ss_pred CCCCCCCCCccccCCCcccccccCCCCccccccccCCCCC--CCCCCcccCCCCC
Q 000915 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPE--GTCEDTWLCPRCV 177 (1225)
Q Consensus 125 ~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe--~VPeGDWfCP~C~ 177 (1225)
.|.+|++ .++.+.||.||.|+.|||..|++++.. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~------~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQ------SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTS------SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCC------cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4889964 334567999999999999999999975 4555699999985
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.28 E-value=3.9e-07 Score=74.83 Aligned_cols=38 Identities=37% Similarity=0.811 Sum_probs=28.1
Q ss_pred cccccccccccceecCCCCcccHhHHhhhccc----CCCCCCc
Q 000915 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTI----TNLCPLC 65 (1225)
Q Consensus 27 CpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~----knSCPLC 65 (1225)
|+||++.|.++ +..+|||+||..||..|.+. ...||.|
T Consensus 1 CpiC~~~~~~P-v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP-VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE-EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc-cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999995 55569999999999997654 2579988
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.22 E-value=7e-07 Score=76.21 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=40.8
Q ss_pred cccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 25 ~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
..|+||++.+.++ ++.+|||+||..||..|......||.|+..+..
T Consensus 2 ~~Cpi~~~~~~~P-v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP-VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC-EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 5799999999984 667899999999999999888899999988754
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.1e-07 Score=94.18 Aligned_cols=50 Identities=34% Similarity=0.674 Sum_probs=42.5
Q ss_pred ccccccccccccccccc-eecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 22 FECGRCGICMDVVIDRG-VLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~-vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
.....|+|||+.+..+. +...|||.||..||....+....||+|++.+..
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 44578999999997654 557899999999999999999999999975543
No 17
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.14 E-value=1.1e-06 Score=101.20 Aligned_cols=49 Identities=39% Similarity=0.661 Sum_probs=42.6
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
.....|+||++.+..+ ++.+|+|.||..||..|......||+|+..+..
T Consensus 24 e~~l~C~IC~d~~~~P-vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP-VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCc-cCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3467999999999874 567899999999999999887889999998764
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.13 E-value=1.1e-06 Score=70.04 Aligned_cols=39 Identities=38% Similarity=0.933 Sum_probs=34.7
Q ss_pred cccccccccccceecCCCCcccHhHHhhhcc--cCCCCCCc
Q 000915 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWST--ITNLCPLC 65 (1225)
Q Consensus 27 CpICLE~fsD~~vL~pCgHtFC~~CIqqWlK--~knSCPLC 65 (1225)
|+||++.+.++..+.+|+|.||..||..|.+ ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999988665888999999999999987 57779998
No 19
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=9.9e-07 Score=99.89 Aligned_cols=47 Identities=34% Similarity=0.825 Sum_probs=39.8
Q ss_pred ccccccccccc--ccceecCCCCcccHhHHhhhcccC-CCCCCccccccc
Q 000915 25 GRCGICMDVVI--DRGVLDCCQHWFCFACIDNWSTIT-NLCPLCQGEFQL 71 (1225)
Q Consensus 25 ~tCpICLE~fs--D~~vL~pCgHtFC~~CIqqWlK~k-nSCPLCRaeFs~ 71 (1225)
+.|+||+|.|. ++..++||.|.||..||+.|+... ..||+|+.....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 69999999985 557788999999999999999775 559999985543
No 21
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.07 E-value=1.5e-06 Score=103.49 Aligned_cols=56 Identities=21% Similarity=0.580 Sum_probs=45.0
Q ss_pred ccccCCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 118 VICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 118 viC~D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
+.|..+..|..|+. .+++...++|+.||..||.||..|+...++.|.|+|+-|..-
T Consensus 63 WrC~~crvCe~c~~------~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c 118 (694)
T KOG4443|consen 63 WRCPSCRVCEACGT------TGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRC 118 (694)
T ss_pred cccCCceeeeeccc------cCCcccccccccccccccccccCCccccccCcccccHHHHhh
Confidence 34544556777852 245667899999999999999999999999999999988554
No 22
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.04 E-value=2.4e-06 Score=80.34 Aligned_cols=49 Identities=29% Similarity=0.676 Sum_probs=39.0
Q ss_pred cccccccccccccc------------cceecCCCCcccHhHHhhhccc---CCCCCCccccccc
Q 000915 23 ECGRCGICMDVVID------------RGVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEFQL 71 (1225)
Q Consensus 23 Ed~tCpICLE~fsD------------~~vL~pCgHtFC~~CIqqWlK~---knSCPLCRaeFs~ 71 (1225)
.++.|+||+..|.. +.+...|+|.||..||.+|+.. +..||+||+.+.+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 36789999988752 1234479999999999999875 5789999998864
No 23
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.99 E-value=1.9e-06 Score=96.70 Aligned_cols=48 Identities=29% Similarity=0.673 Sum_probs=43.2
Q ss_pred cccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
..++|.||.+.|.- +++.+|+|+||-.||+.++..+..||.|+.+|.-
T Consensus 22 ~lLRC~IC~eyf~i-p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI-PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhcC-ceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 34699999999986 6788899999999999999999999999998864
No 24
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.95 E-value=2.7e-06 Score=93.77 Aligned_cols=55 Identities=29% Similarity=0.646 Sum_probs=45.1
Q ss_pred cccccCCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCC-CCCCC
Q 000915 117 AVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCP-RCVAE 179 (1225)
Q Consensus 117 ~viC~D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP-~C~~~ 179 (1225)
-+.|.++..|.||++. ..++-+++||.||++||++|+|+.. +|.|.|+|. .|...
T Consensus 308 ~W~C~~C~lC~IC~~P------~~E~E~~FCD~CDRG~HT~CVGL~~--lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 308 FWKCSSCELCRICLGP------VIESEHLFCDVCDRGPHTLCVGLQD--LPRGEWICDMRCREA 363 (381)
T ss_pred chhhcccHhhhccCCc------ccchheeccccccCCCCcccccccc--ccCccchhhhHHHHh
Confidence 3567788899999655 3456799999999999999999986 899999998 45444
No 25
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.95 E-value=5.3e-06 Score=68.10 Aligned_cols=42 Identities=31% Similarity=0.820 Sum_probs=36.7
Q ss_pred ccccccccc--cccceecCCCCcccHhHHhhhcccCCCCCCccc
Q 000915 26 RCGICMDVV--IDRGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (1225)
Q Consensus 26 tCpICLE~f--sD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRa 67 (1225)
.|+||++.+ ..+.++.+|+|+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 499999999 345789999999999999998866788999985
No 26
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=4.3e-06 Score=84.50 Aligned_cols=45 Identities=33% Similarity=0.625 Sum_probs=39.3
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccc
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRa 67 (1225)
.+...|+||++.|..+ .+.+|+|+||..||..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP-VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC-ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4567999999999986 88889999999999997666678999993
No 27
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.88 E-value=4.8e-06 Score=92.03 Aligned_cols=50 Identities=26% Similarity=0.496 Sum_probs=44.2
Q ss_pred cccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCcccccccee
Q 000915 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I~ 73 (1225)
.-+.|-||.+.|.- +.+.+|||+||..||...+..+..||+||..+....
T Consensus 24 s~lrC~IC~~~i~i-p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 24 SMLRCRICDCRISI-PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESR 73 (391)
T ss_pred hHHHhhhhhheeec-ceecccccchhHHHHHHHhcCCCCCccccccHHhhh
Confidence 34789999999986 577789999999999999999999999999988654
No 28
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.87 E-value=7.7e-06 Score=61.43 Aligned_cols=38 Identities=42% Similarity=1.046 Sum_probs=32.4
Q ss_pred cccccccccccceecCCCCcccHhHHhhhcc-cCCCCCCc
Q 000915 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWST-ITNLCPLC 65 (1225)
Q Consensus 27 CpICLE~fsD~~vL~pCgHtFC~~CIqqWlK-~knSCPLC 65 (1225)
|+||++.... ....+|+|.||..|+..|.. ....||.|
T Consensus 1 C~iC~~~~~~-~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD-PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC-cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999999665 56667999999999999987 56779987
No 29
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=8.2e-06 Score=92.56 Aligned_cols=51 Identities=25% Similarity=0.578 Sum_probs=41.5
Q ss_pred Ccccccccccccc-cccc-----------ceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 21 NFECGRCGICMDV-VIDR-----------GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 21 ssEd~tCpICLE~-fsD~-----------~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
...+..|.||++. ++.. +.-.||||.||+.|+..|.+++..||+||.++-+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 3567799999998 4321 2445799999999999999999999999998544
No 30
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=7.1e-06 Score=91.26 Aligned_cols=47 Identities=36% Similarity=0.830 Sum_probs=40.7
Q ss_pred cccccccccccc--ccceecCCCCcccHhHHhhhcc-cCCCCCCcccccc
Q 000915 24 CGRCGICMDVVI--DRGVLDCCQHWFCFACIDNWST-ITNLCPLCQGEFQ 70 (1225)
Q Consensus 24 d~tCpICLE~fs--D~~vL~pCgHtFC~~CIqqWlK-~knSCPLCRaeFs 70 (1225)
...|+||++.|. ++.+..||.|.||..|+..|.. ..+.||+||..+.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 478999999984 4577889999999999999987 6899999998753
No 31
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.80 E-value=8e-06 Score=76.20 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=40.3
Q ss_pred cccccccccccccc---------------ceecCCCCcccHhHHhhhcccCCCCCCccccccce
Q 000915 24 CGRCGICMDVVIDR---------------GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72 (1225)
Q Consensus 24 d~tCpICLE~fsD~---------------~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I 72 (1225)
-++|+||...+.+. ..-..|.|.||..||.+|+..++.||+||++|.+.
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 46899999887642 12235999999999999999999999999998864
No 32
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.79 E-value=7.8e-06 Score=90.04 Aligned_cols=36 Identities=44% Similarity=1.161 Sum_probs=32.6
Q ss_pred ccccccCC--CC-ccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 142 DTSIACDS--CD-LWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 142 D~LLlCDs--CD-~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
+.|+.||. |+ .|||+.|+|+.. .|.|.||||.|...
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVGL~~--~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVGLKT--KPKGKWYCPRCKAE 268 (274)
T ss_pred ccccccCCCCCCcceEEEecccccc--CCCCcccchhhhhh
Confidence 46999997 99 899999999985 78899999999876
No 33
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.79 E-value=6.3e-06 Score=98.17 Aligned_cols=51 Identities=31% Similarity=0.741 Sum_probs=42.4
Q ss_pred CCCCCCCCCCccccCCCcccccccCCCCccccccccCCC--CCCCCCCcccCCCCCCCC
Q 000915 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFD--PEGTCEDTWLCPRCVAEV 180 (1225)
Q Consensus 124 ~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPP--Le~VPeGDWfCP~C~~~~ 180 (1225)
.+|..|++. + ...-+|+||+|+..||+.||.|| .+.+|.|.|||+.|....
T Consensus 254 ~fCsaCn~~---~---~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 254 DFCSACNGS---G---LFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHhCCc---c---ccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 389999766 2 22347999999999999999999 467999999999997763
No 34
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.78 E-value=1.8e-05 Score=92.40 Aligned_cols=51 Identities=24% Similarity=0.547 Sum_probs=42.0
Q ss_pred CCCCCCCCccccCCCcccccccCCCCccccccccCCCC----CCCCCCcccCCCCCCCC
Q 000915 126 CKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDP----EGTCEDTWLCPRCVAEV 180 (1225)
Q Consensus 126 CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPL----e~VPeGDWfCP~C~~~~ 180 (1225)
|.+|.. +..+.++.||.|++|..|||..|..|+. ...+..+|||-.|..+.
T Consensus 171 c~vC~~----g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 171 CSVCYC----GGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred eeeeec----CCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 888843 2445677999999999999999999984 45678899999999884
No 35
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.1e-05 Score=94.50 Aligned_cols=47 Identities=30% Similarity=0.631 Sum_probs=37.8
Q ss_pred ccccccccccccccceecCCCCcccHhHHhhhcc-----cCCCCCCccccccc
Q 000915 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST-----ITNLCPLCQGEFQL 71 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK-----~knSCPLCRaeFs~ 71 (1225)
+..||||++...- +..+.|||+||+.||-+++. .-..||+|+..++.
T Consensus 186 ~~~CPICL~~~~~-p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV-PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc-ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7799999999765 45555999999999988542 24579999998886
No 36
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.71 E-value=2.3e-05 Score=80.27 Aligned_cols=29 Identities=28% Similarity=0.650 Sum_probs=26.8
Q ss_pred cccccccCCCCCCCCCCcccCCCCCCCCC
Q 000915 153 WYHAFCVGFDPEGTCEDTWLCPRCVAEVP 181 (1225)
Q Consensus 153 aYH~~CLgPPLe~VPeGDWfCP~C~~~~p 181 (1225)
+||++||.||+..+|+|+|+||.|.....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 69999999999999999999999998743
No 37
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=9.1e-06 Score=96.51 Aligned_cols=50 Identities=24% Similarity=0.549 Sum_probs=42.3
Q ss_pred cCcccccccccccccccc----ceecCCCCcccHhHHhhhcccCCCCCCccccc
Q 000915 20 LNFECGRCGICMDVVIDR----GVLDCCQHWFCFACIDNWSTITNLCPLCQGEF 69 (1225)
Q Consensus 20 sssEd~tCpICLE~fsD~----~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeF 69 (1225)
....+..|+||++.+... ....+|+|.||..|+..|.++..+||.||..+
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 345578999999998763 45556999999999999999999999999943
No 38
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.4e-05 Score=87.64 Aligned_cols=49 Identities=24% Similarity=0.650 Sum_probs=41.3
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhh-hcccCCC-CCCccccccc
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDN-WSTITNL-CPLCQGEFQL 71 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqq-WlK~knS-CPLCRaeFs~ 71 (1225)
..+..|.||++.... +...+|||.||..||-. |.+.+.. ||+||+..+.
T Consensus 213 ~~d~kC~lC~e~~~~-ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEV-PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCC-cccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 447789999999887 56777999999999998 9877665 9999987653
No 39
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.63 E-value=3e-05 Score=97.63 Aligned_cols=53 Identities=32% Similarity=0.654 Sum_probs=44.5
Q ss_pred cCCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 121 LDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 121 ~D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
..+.+|.||... +..+.+.+++||.|+.++|.+|.|.+- +|+|.|+|..|...
T Consensus 217 ~~D~~C~iC~~~----~~~n~n~ivfCD~Cnl~VHq~Cygi~~--ipeg~WlCr~Cl~s 269 (1051)
T KOG0955|consen 217 EEDAVCCICLDG----ECQNSNVIVFCDGCNLAVHQECYGIPF--IPEGQWLCRRCLQS 269 (1051)
T ss_pred CCCccceeeccc----ccCCCceEEEcCCCcchhhhhccCCCC--CCCCcEeehhhccC
Confidence 456789999543 445668999999999999999999654 99999999999877
No 40
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.61 E-value=2.7e-05 Score=70.22 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=38.2
Q ss_pred cccccccccccccccceecCCCCcccHhHHhhhccc-CCCCCCcccccccee
Q 000915 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEFQLIT 73 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~-knSCPLCRaeFs~I~ 73 (1225)
+.+.|+||.+.+.++ ++.+|||+|+..||..|... ...||+|+..+....
T Consensus 3 ~~f~CpIt~~lM~dP-Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 3 DEFLCPITGELMRDP-VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESD 53 (73)
T ss_dssp GGGB-TTTSSB-SSE-EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred cccCCcCcCcHhhCc-eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence 357999999999995 55668899999999999988 889999998877543
No 41
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.57 E-value=3e-05 Score=94.53 Aligned_cols=47 Identities=28% Similarity=0.701 Sum_probs=40.6
Q ss_pred CCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 124 ~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
..|.+|+. .+.+++||.|..+||.+|+++|+..+|.++|.|++|...
T Consensus 48 e~c~ic~~---------~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 48 EACRICAD---------GGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhhhhhcC---------CCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 47999942 235899999999999999999999999999999999555
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=5.3e-05 Score=86.29 Aligned_cols=53 Identities=34% Similarity=0.950 Sum_probs=43.4
Q ss_pred Ccccccccccccccccc-------ceecCCCCcccHhHHhhhc--cc-----CCCCCCcccccccee
Q 000915 21 NFECGRCGICMDVVIDR-------GVLDCCQHWFCFACIDNWS--TI-----TNLCPLCQGEFQLIT 73 (1225)
Q Consensus 21 ssEd~tCpICLE~fsD~-------~vL~pCgHtFC~~CIqqWl--K~-----knSCPLCRaeFs~I~ 73 (1225)
...+..|+||++.+..+ +.+++|.|.||..||..|. ++ ...||.||....++.
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 46688999999998654 3457899999999999998 33 578999999877654
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=4e-05 Score=93.17 Aligned_cols=49 Identities=29% Similarity=0.640 Sum_probs=41.0
Q ss_pred ccccccccccccccceecCCCCcccHhHHhhhc-ccCCCCCCcccccccee
Q 000915 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWS-TITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWl-K~knSCPLCRaeFs~I~ 73 (1225)
-.+|++|.....+ .++..|+|.||+.||+.-. .+...||.|...|..-.
T Consensus 643 ~LkCs~Cn~R~Kd-~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD-AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchhh-HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 4689999988887 6777799999999999754 55889999999998633
No 44
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.41 E-value=3.2e-05 Score=100.24 Aligned_cols=51 Identities=25% Similarity=0.630 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 123 ~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
...|.+|... .....|++|+.|+.|||++|+.|.+..+|.++|+||.|+..
T Consensus 1108 ~~~c~~cr~k------~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1108 NALCKVCRRK------KQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred hhhhhhhhhc------ccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 4679999322 23357999999999999999999999999999999999988
No 45
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=0.00013 Score=82.19 Aligned_cols=50 Identities=20% Similarity=0.480 Sum_probs=38.1
Q ss_pred cccccccccc--cccc--ceecCCCCcccHhHHhh-hcccCCCCCCcccccccee
Q 000915 24 CGRCGICMDV--VIDR--GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 24 d~tCpICLE~--fsD~--~vL~pCgHtFC~~CIqq-WlK~knSCPLCRaeFs~I~ 73 (1225)
+..||||... +... ..+.+|||.||..||.. |......||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4689999985 3322 23447999999999998 6666778999998877533
No 46
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=5.3e-05 Score=73.68 Aligned_cols=51 Identities=31% Similarity=0.785 Sum_probs=40.8
Q ss_pred Ccccccccccccccccc--------------ce--ecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 21 NFECGRCGICMDVVIDR--------------GV--LDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 21 ssEd~tCpICLE~fsD~--------------~v--L~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
+..-++|+||..-+.+. ++ =..|+|.||+.||.+|+++.+.||+|.+...+
T Consensus 43 Di~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 43 DIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 46678999999776542 11 12599999999999999999999999987664
No 47
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.24 E-value=0.0001 Score=61.50 Aligned_cols=36 Identities=31% Similarity=0.711 Sum_probs=20.4
Q ss_pred cccccccccc---cceecCCCCcccHhHHhhhccc----CCCCC
Q 000915 27 CGICMDVVID---RGVLDCCQHWFCFACIDNWSTI----TNLCP 63 (1225)
Q Consensus 27 CpICLE~fsD---~~vL~pCgHtFC~~CIqqWlK~----knSCP 63 (1225)
|+||++ +.. +++.++|||+||..||++++.. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 754 3555669999999999998863 44576
No 48
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00014 Score=82.55 Aligned_cols=69 Identities=26% Similarity=0.493 Sum_probs=53.2
Q ss_pred hhhhhhhcccCCC----CcccccCccccccccccccccccceecCCCCc-ccHhHHhhhcccCCCCCCccccccce
Q 000915 2 ESMLEEQTFQVDN----TENDLLNFECGRCGICMDVVIDRGVLDCCQHW-FCFACIDNWSTITNLCPLCQGEFQLI 72 (1225)
Q Consensus 2 ~~~~eee~~avD~----~edDssssEd~tCpICLE~fsD~~vL~pCgHt-FC~~CIqqWlK~knSCPLCRaeFs~I 72 (1225)
+|+++|+....+. .+.+ .+.+...|-||+....+ -.+.||.|. .|..|.....-+++.||+||+.+...
T Consensus 265 ~y~LqEiyGien~~v~~~~~~-~~~~gkeCVIClse~rd-t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 265 RYLLQEIYGIENSTVEGTDAD-ESESGKECVICLSESRD-TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred eeeeehhhccccCCCCCCccc-cccCCCeeEEEecCCcc-eEEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 4677777654422 2222 44567899999999988 677789999 99999998887899999999998753
No 49
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=6.2e-05 Score=69.95 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=38.5
Q ss_pred cccccccccccccccc------------ceecCCCCcccHhHHhhhccc---CCCCCCccccccc
Q 000915 22 FECGRCGICMDVVIDR------------GVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEFQL 71 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~------------~vL~pCgHtFC~~CIqqWlK~---knSCPLCRaeFs~ 71 (1225)
..+++|.||.-.|..- .++--|.|.||..||.+|... +..||+||+.|.+
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 3445899999888531 223359999999999999854 6679999999875
No 50
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.17 E-value=0.00014 Score=79.68 Aligned_cols=36 Identities=36% Similarity=1.076 Sum_probs=31.0
Q ss_pred cccccccC--CCCc-cccccccCCCCCCCCCCcccCCCCCC
Q 000915 141 LDTSIACD--SCDL-WYHAFCVGFDPEGTCEDTWLCPRCVA 178 (1225)
Q Consensus 141 eD~LLlCD--sCD~-aYH~~CLgPPLe~VPeGDWfCP~C~~ 178 (1225)
.+.|+.|| .|.+ |||+.|+|+.. .|.|.|||+.|..
T Consensus 231 yGqMVaCDn~nCkrEWFH~~CVGLk~--pPKG~WYC~eCk~ 269 (271)
T COG5034 231 YGQMVACDNANCKREWFHLECVGLKE--PPKGKWYCPECKK 269 (271)
T ss_pred cccceecCCCCCchhheeccccccCC--CCCCcEeCHHhHh
Confidence 34799999 4875 99999999886 7899999999975
No 51
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.17 E-value=0.0002 Score=86.22 Aligned_cols=109 Identities=15% Similarity=0.326 Sum_probs=72.7
Q ss_pred CCCCCCCCCCccccCCCcccccccC--CCCccccccccCCCCCCCCCCcccCCCCCCCCCCCCcc---------cccccc
Q 000915 124 DGCKIRSGSMVAEESSNLDTSIACD--SCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQNSSI---------DLTQST 192 (1225)
Q Consensus 124 ~~CkVCgGs~~~~DdddeD~LLlCD--sCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~~p~ga~~---------sl~qrl 192 (1225)
+.|.||. +-++. .++-++||| .|..+.|..|.|+.. ||.|.|||+-|.... ..+.+ -..++.
T Consensus 6 GGCCVCS--DErGW--aeNPLVYCDG~nCsVAVHQaCYGIvq--VPtGpWfCrKCesqe-raarvrCeLCP~kdGALKkT 78 (900)
T KOG0956|consen 6 GGCCVCS--DERGW--AENPLVYCDGHNCSVAVHQACYGIVQ--VPTGPWFCRKCESQE-RAARVRCELCPHKDGALKKT 78 (900)
T ss_pred cceeeec--CcCCC--ccCceeeecCCCceeeeehhcceeEe--cCCCchhhhhhhhhh-hhccceeecccCcccceecc
Confidence 5689994 23343 345799999 599999999999997 999999999995541 11111 112222
Q ss_pred cCCCCCCCCCCCcccccccccccccccccCCCceEEEEeecCCCCccchhhHHH
Q 000915 193 NDQSGPENANGDHLAESLFPRKVSVSVADAGETAVVVSMIGEEPNENFQSMLEI 246 (1225)
Q Consensus 193 ~kQ~~~e~~s~r~lAEd~fe~EVSvsVAd~GETA~VVSmVG~~~~~~~~s~LE~ 246 (1225)
....| .++.++.+-.||.+--.. ..-.||++.|--++.+..|=|-+.
T Consensus 79 Dn~GW------AHVVCALYIPEVrFgNV~-TMEPIiLq~VP~dRfnKtCYIC~E 125 (900)
T KOG0956|consen 79 DNGGW------AHVVCALYIPEVRFGNVH-TMEPIILQDVPHDRFNKTCYICNE 125 (900)
T ss_pred cCCCc------eEEEEEeeccceeecccc-cccceeeccCchhhhcceeeeecc
Confidence 22223 478888888888774322 124788888888877777765443
No 52
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=4.7e-05 Score=86.32 Aligned_cols=48 Identities=29% Similarity=0.606 Sum_probs=40.1
Q ss_pred cccccccccccccccceecCCCCcccHhHHhhhc-ccCCCCCCcccccc
Q 000915 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWS-TITNLCPLCQGEFQ 70 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWl-K~knSCPLCRaeFs 70 (1225)
-++.|+|||+.+..-.....|.|.||+.||..-+ ...+.||.||+...
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 3678999999998766777899999999997754 45789999998754
No 53
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.11 E-value=0.00022 Score=64.55 Aligned_cols=45 Identities=33% Similarity=0.805 Sum_probs=24.5
Q ss_pred ccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCcccccc
Q 000915 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs 70 (1225)
...|++|.+.+..+..+..|.|.||..||..... ..||+|+.+-.
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 4689999999998777889999999999988553 34999988754
No 54
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.05 E-value=0.00017 Score=84.30 Aligned_cols=51 Identities=27% Similarity=0.692 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 123 ~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
++.|.+|.+. +.++.+.+++||+|+.+.|..|.|++- +|+|.|+|..|.-.
T Consensus 193 d~~C~~c~~t----~~eN~naiVfCdgC~i~VHq~CYGI~f--~peG~WlCrkCi~~ 243 (669)
T COG5141 193 DDICTKCTST----HNENSNAIVFCDGCEICVHQSCYGIQF--LPEGFWLCRKCIYG 243 (669)
T ss_pred hhhhHhcccc----ccCCcceEEEecCcchhhhhhccccee--cCcchhhhhhhccc
Confidence 3568888543 455778999999999999999999996 89999999999766
No 55
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.86 E-value=0.00032 Score=85.09 Aligned_cols=109 Identities=19% Similarity=0.384 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCCCCCCCcc------cccccccCC
Q 000915 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQNSSI------DLTQSTNDQ 195 (1225)
Q Consensus 122 D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~~p~ga~~------sl~qrl~kQ 195 (1225)
++..|.+|.- .|.+..+.|++||.|+...|..|.|+-. +|+|.|.|.-|.-+...-=++ .++.....+
T Consensus 270 edviCDvCrs----pD~e~~neMVfCd~Cn~cVHqaCyGIle--~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT 343 (893)
T KOG0954|consen 270 EDVICDVCRS----PDSEEANEMVFCDKCNICVHQACYGILE--VPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGT 343 (893)
T ss_pred ccceeceecC----CCccccceeEEeccchhHHHHhhhceee--cCCCCeeehhccccCCCCeeeccccCCcccccCCCC
Confidence 3456899932 3455667899999999999999999986 899999999997663111111 112222222
Q ss_pred CCCCCCCCCcccccccccccccccccCCCceEEEEeecCCCCccchh
Q 000915 196 SGPENANGDHLAESLFPRKVSVSVADAGETAVVVSMIGEEPNENFQS 242 (1225)
Q Consensus 196 ~~~e~~s~r~lAEd~fe~EVSvsVAd~GETA~VVSmVG~~~~~~~~s 242 (1225)
. -+++.++.+-.||++.-.+.-|-..-++-+-..+|.-.|+
T Consensus 344 ~------wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~ 384 (893)
T KOG0954|consen 344 K------WAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCN 384 (893)
T ss_pred e------eeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHH
Confidence 2 2477888888998887777767777777777778875555
No 56
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00042 Score=81.26 Aligned_cols=49 Identities=29% Similarity=0.659 Sum_probs=38.7
Q ss_pred cccccccccccccccc----------------ceecCCCCcccHhHHhhhcc-cCCCCCCcccccc
Q 000915 22 FECGRCGICMDVVIDR----------------GVLDCCQHWFCFACIDNWST-ITNLCPLCQGEFQ 70 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~----------------~vL~pCgHtFC~~CIqqWlK-~knSCPLCRaeFs 70 (1225)
.....|+||+..+.-. -.+.||.|.||..|+.+|.+ .+..||.||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 4456899999886311 24558999999999999998 5779999998753
No 57
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.77 E-value=0.00039 Score=85.85 Aligned_cols=50 Identities=30% Similarity=0.699 Sum_probs=40.4
Q ss_pred cccccccccccccc--cc----ceecCCCCcccHhHHhhhccc--CCCCCCccccccc
Q 000915 22 FECGRCGICMDVVI--DR----GVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQL 71 (1225)
Q Consensus 22 sEd~tCpICLE~fs--D~----~vL~pCgHtFC~~CIqqWlK~--knSCPLCRaeFs~ 71 (1225)
+.-+.|+||+..++ ++ ..+..|.|.||..|+-+|.+. .+.||+||..+.+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 44568999999875 22 467789999999999999864 7789999987654
No 58
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.00071 Score=59.85 Aligned_cols=47 Identities=30% Similarity=0.796 Sum_probs=38.9
Q ss_pred cccccccccccccceecCCCCc-ccHhHH-hhhcccCCCCCCccccccce
Q 000915 25 GRCGICMDVVIDRGVLDCCQHW-FCFACI-DNWSTITNLCPLCQGEFQLI 72 (1225)
Q Consensus 25 ~tCpICLE~fsD~~vL~pCgHt-FC~~CI-qqWlK~knSCPLCRaeFs~I 72 (1225)
+.|.||++.-.+ .++-.|||. .|+.|- +.|......||+||+++..+
T Consensus 8 dECTICye~pvd-sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 8 DECTICYEHPVD-SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDV 56 (62)
T ss_pred cceeeeccCcch-HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHH
Confidence 789999998766 677789998 999995 45666788999999987653
No 59
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0029 Score=70.41 Aligned_cols=55 Identities=22% Similarity=0.518 Sum_probs=43.6
Q ss_pred ccCccccccccccccccccceecCCCCcccHhHHhhhcc--cCCCCCCcccccccee
Q 000915 19 LLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST--ITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 19 ssssEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK--~knSCPLCRaeFs~I~ 73 (1225)
+....+.+|++|-+.-..|-...+|+|.||+.||..-.. ....||.|......+.
T Consensus 234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 334667899999999887777888999999999986443 3578999998877544
No 60
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.34 E-value=0.0015 Score=76.32 Aligned_cols=46 Identities=24% Similarity=0.591 Sum_probs=36.7
Q ss_pred Ccccccccccccccccc---ceecCCCCcccHhHHhhhcccCCCCCCcccc
Q 000915 21 NFECGRCGICMDVVIDR---GVLDCCQHWFCFACIDNWSTITNLCPLCQGE 68 (1225)
Q Consensus 21 ssEd~tCpICLE~fsD~---~vL~pCgHtFC~~CIqqWlK~knSCPLCRae 68 (1225)
-.+..+|+|||+.+..- .....|.|.||-.|+..|. ..+||+||..
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~ 220 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYC 220 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhh
Confidence 36778999999998532 2445699999999999997 4689999753
No 61
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.22 E-value=0.00087 Score=75.85 Aligned_cols=50 Identities=26% Similarity=0.597 Sum_probs=44.3
Q ss_pred ccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCcccccccee
Q 000915 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I~ 73 (1225)
..+|.+|...|.+.-.+.-|-|+||..||-......++||.|...++.-.
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 47999999999997788889999999999999988999999998776543
No 62
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0025 Score=74.27 Aligned_cols=49 Identities=29% Similarity=0.597 Sum_probs=42.8
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
..+..|.||+..+..+.+. +|||.||..||.+-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~t-pcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVT-PCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccc-cccccccHHHHHHHhccCCCCccccccccc
Confidence 6678999999999985554 899999999999988888899999998774
No 63
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.04 E-value=0.0032 Score=72.91 Aligned_cols=55 Identities=31% Similarity=0.593 Sum_probs=46.1
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccccceeecc
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVP 76 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I~~vP 76 (1225)
.+...|+||...+.++.....|+|.||..|+..|......||.|+........++
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 4567999999999985443579999999999999998999999999887766443
No 64
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0031 Score=71.00 Aligned_cols=47 Identities=26% Similarity=0.496 Sum_probs=37.7
Q ss_pred ccccccccccccccceecCCCCcccHhHHhhhccc-CCCCCCccccccc
Q 000915 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEFQL 71 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~-knSCPLCRaeFs~ 71 (1225)
...|+||+....-+ +.+.|+|.||+-||..-..+ ...|++||.+|..
T Consensus 7 ~~eC~IC~nt~n~P-v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCP-VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcC-ccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 45799999987654 77779999999999874444 4569999998764
No 65
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.87 E-value=0.002 Score=58.42 Aligned_cols=48 Identities=27% Similarity=0.651 Sum_probs=23.4
Q ss_pred cccccccccccc-c----cceec--CCCCcccHhHHhhhccc-----------CCCCCCccccccc
Q 000915 24 CGRCGICMDVVI-D----RGVLD--CCQHWFCFACIDNWSTI-----------TNLCPLCQGEFQL 71 (1225)
Q Consensus 24 d~tCpICLE~fs-D----~~vL~--pCgHtFC~~CIqqWlK~-----------knSCPLCRaeFs~ 71 (1225)
+..|+||+..+. . ..+.. .|++.||..|+.+|+.. ...||.|+..+..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 358999998865 2 12333 79999999999999742 1249999988653
No 66
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.0032 Score=72.60 Aligned_cols=44 Identities=32% Similarity=0.782 Sum_probs=33.4
Q ss_pred cccccccccc---cccceecCCCCcccHhHHhhhcccC---CCCCCcccc
Q 000915 25 GRCGICMDVV---IDRGVLDCCQHWFCFACIDNWSTIT---NLCPLCQGE 68 (1225)
Q Consensus 25 ~tCpICLE~f---sD~~vL~pCgHtFC~~CIqqWlK~k---nSCPLCRae 68 (1225)
..|.||-+.+ ++.+.+..|||+||..|+.+|.+.. ..||+|+-.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeec
Confidence 3699995554 2334566799999999999999872 469999943
No 67
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0041 Score=69.21 Aligned_cols=50 Identities=24% Similarity=0.582 Sum_probs=39.1
Q ss_pred cccccccccccccccc---------ceecCCCCcccHhHHhhhcc--cCCCCCCccccccc
Q 000915 22 FECGRCGICMDVVIDR---------GVLDCCQHWFCFACIDNWST--ITNLCPLCQGEFQL 71 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~---------~vL~pCgHtFC~~CIqqWlK--~knSCPLCRaeFs~ 71 (1225)
.++..|+||-..+..- ..-..|+|.||-.||+.|.- .+..||.|+..+..
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4667999999876421 23347999999999999974 47889999987664
No 68
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.62 E-value=0.0063 Score=71.94 Aligned_cols=49 Identities=27% Similarity=0.587 Sum_probs=40.1
Q ss_pred CCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCC----cccCCCCCCC
Q 000915 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCED----TWLCPRCVAE 179 (1225)
Q Consensus 125 ~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeG----DWfCP~C~~~ 179 (1225)
-|-||.++. +-..++.||.|..-||.-||.||++..|.. .|.|-.|...
T Consensus 546 sCgiCkks~------dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~ 598 (707)
T KOG0957|consen 546 SCGICKKST------DQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKN 598 (707)
T ss_pred eeeeeccch------hhHHHhhcchhhceeeccccCCccccCcccccCcceeecccccc
Confidence 599996552 334789999999999999999999888865 4999999443
No 69
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.47 E-value=0.002 Score=52.17 Aligned_cols=34 Identities=32% Similarity=0.898 Sum_probs=19.9
Q ss_pred ccccccCCCCccccccccCCCCCCCCCC-cccCCCCC
Q 000915 142 DTSIACDSCDLWYHAFCVGFDPEGTCED-TWLCPRCV 177 (1225)
Q Consensus 142 D~LLlCDsCD~aYH~~CLgPPLe~VPeG-DWfCP~C~ 177 (1225)
+.|+.|++|+...|..|.|... ++.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~--~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSE--VPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS----SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCccc--CCCCCcEECCcCC
Confidence 3689999999999999999987 3444 79999884
No 70
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.29 E-value=0.0077 Score=69.74 Aligned_cols=49 Identities=27% Similarity=0.698 Sum_probs=41.2
Q ss_pred cccccccccccccceecCCCCcccHhHHhhhccc--CCCCCCccccccceee
Q 000915 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQLITC 74 (1225)
Q Consensus 25 ~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~--knSCPLCRaeFs~I~~ 74 (1225)
..|-||-+.-.+ ..+.+|||..|..|+..|... ...||.||.++.....
T Consensus 370 eLCKICaendKd-vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAENDKD-VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccCCC-cccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 369999998777 788999999999999999844 6789999998775443
No 71
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.08 E-value=0.012 Score=50.37 Aligned_cols=41 Identities=22% Similarity=0.694 Sum_probs=30.5
Q ss_pred cccccccccc-ccceecCCC-----CcccHhHHhhhccc--CCCCCCcc
Q 000915 26 RCGICMDVVI-DRGVLDCCQ-----HWFCFACIDNWSTI--TNLCPLCQ 66 (1225)
Q Consensus 26 tCpICLE~fs-D~~vL~pCg-----HtFC~~CIqqWlK~--knSCPLCR 66 (1225)
.|-||++... +...+.||. |.||..|+.+|... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998322 124566774 88999999999854 56899995
No 72
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.90 E-value=0.013 Score=51.70 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=29.9
Q ss_pred cccccccccccccccceecCCCCcccHhHHhhhcc--cCCCCCC
Q 000915 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST--ITNLCPL 64 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK--~knSCPL 64 (1225)
-...|+|.+..|.++.....|+|+|....|.+|.. ....||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45799999999999877778999999999999993 3566998
No 73
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.01 Score=67.97 Aligned_cols=54 Identities=28% Similarity=0.543 Sum_probs=45.0
Q ss_pred ccccCccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 17 NDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 17 dDssssEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
.+.-++++..|+||+..-.. .+..||+|.-|+.||.+.+-+...|=.|+.....
T Consensus 415 ~~lp~sEd~lCpICyA~pi~-Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGPIN-AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCCCCcccccCcceecccch-hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 34445888999999977544 5778899999999999999888999999987664
No 74
>PHA03096 p28-like protein; Provisional
Probab=94.55 E-value=0.014 Score=65.68 Aligned_cols=44 Identities=30% Similarity=0.585 Sum_probs=33.1
Q ss_pred ccccccccccccc-------ceecCCCCcccHhHHhhhccc---CCCCCCcccc
Q 000915 25 GRCGICMDVVIDR-------GVLDCCQHWFCFACIDNWSTI---TNLCPLCQGE 68 (1225)
Q Consensus 25 ~tCpICLE~fsD~-------~vL~pCgHtFC~~CIqqWlK~---knSCPLCRae 68 (1225)
-.|+||++....+ +.+..|.|.||..||..|... ...||.||..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 6899999987532 677899999999999999743 3345555443
No 75
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.017 Score=65.17 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=39.3
Q ss_pred ccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
.+.|-||...|.+ ++...|+|+||..|...-......|++|.+..+.
T Consensus 241 Pf~c~icr~~f~~-pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYR-PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred Ccccccccccccc-chhhcCCceeehhhhccccccCCcceeccccccc
Confidence 4679999999988 4666699999999987777777899999887654
No 76
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.50 E-value=0.026 Score=60.83 Aligned_cols=46 Identities=26% Similarity=0.432 Sum_probs=36.7
Q ss_pred ccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCcccccc
Q 000915 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs 70 (1225)
.+.|.||...+.. ++...|||.||..|.-.-......|-+|.+..+
T Consensus 196 PF~C~iCKkdy~s-pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYES-PVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccc-hhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 4689999999987 466669999999997665556678999987544
No 77
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.016 Score=65.23 Aligned_cols=43 Identities=35% Similarity=0.651 Sum_probs=35.4
Q ss_pred ccccccccccccccceecCCCCc-ccHhHHhhhcccCCCCCCccccccc
Q 000915 24 CGRCGICMDVVIDRGVLDCCQHW-FCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~pCgHt-FC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
...|.||++...+ ++.++|||. -|+.|- ++-+.||+||+.+..
T Consensus 300 ~~LC~ICmDaP~D-CvfLeCGHmVtCt~CG----krm~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD-CVFLECGHMVTCTKCG----KRMNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc-eEEeecCcEEeehhhc----cccccCchHHHHHHH
Confidence 6679999999988 788889998 899994 445689999986554
No 78
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.45 E-value=0.075 Score=64.73 Aligned_cols=148 Identities=17% Similarity=0.198 Sum_probs=79.2
Q ss_pred cccccccc--ccccceecCCCCcccHhHHhhhcc------cCCCCCCccccccceeecc---------------------
Q 000915 26 RCGICMDV--VIDRGVLDCCQHWFCFACIDNWST------ITNLCPLCQGEFQLITCVP--------------------- 76 (1225)
Q Consensus 26 tCpICLE~--fsD~~vL~pCgHtFC~~CIqqWlK------~knSCPLCRaeFs~I~~vP--------------------- 76 (1225)
.|+.|-.. |.+...++.|...||+.||++-.. ..+.||.|.....+.....
T Consensus 255 fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~in~~~~t~~~~~~~~~i~t~~~~~IDs 334 (613)
T KOG4299|consen 255 FCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSVINPKMETLSNRGTVVDIFTQFVSKIDS 334 (613)
T ss_pred HHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeeecccchhhhhhccchHHHHHHHHHhhhc
Confidence 89999866 555567888999999999998753 3778999976543322111
Q ss_pred ---cccCCCCCcccCc-cc-cCCCccchhhcccCCCCCCcc-----cCcccccc-cCCCCCCCCCCCCccccCCCccccc
Q 000915 77 ---VYDTIGSNNIDGD-SL-SRGEDWSIEEKSNTLSFPSYY-----IDENAVIC-LDGDGCKIRSGSMVAEESSNLDTSI 145 (1225)
Q Consensus 77 ---vyD~iG~eiVdn~-pL-rrRdD~~sEEEDQTlSfPS~y-----IDEe~viC-~D~~~CkVCgGs~~~~DdddeD~LL 145 (1225)
.+...+..+...+ .+ +....+|++.++...-.+... .++.+..- .....|.-|.+... .....+
T Consensus 335 ~np~q~~lPe~i~~~~~~v~~g~~~~~sd~~~~~pl~~~~~~~d~e~~e~g~~ssg~~~~~~~c~~~~~-----~s~~vl 409 (613)
T KOG4299|consen 335 HNPIQKILPENISESFGGVSRGDDGQYSDTQDEKPLDPPALILDGENDENGIDSSGTELLCGRCSKTQT-----ESVVVL 409 (613)
T ss_pred cchhhhhCCHHHHhhccccccCCCCccccccCCcCCChhhhcccccCCccCCCccCcchhhcccCcchh-----hhhhhh
Confidence 0000000000000 01 111344554443332222221 11111111 12235777753311 134678
Q ss_pred ccCCCCccccccccCCCCCCCCCC--cccCCCCCCC
Q 000915 146 ACDSCDLWYHAFCVGFDPEGTCED--TWLCPRCVAE 179 (1225)
Q Consensus 146 lCDsCD~aYH~~CLgPPLe~VPeG--DWfCP~C~~~ 179 (1225)
-|+-|...||..|+ .+....|.. .|-||.-...
T Consensus 410 ~c~ye~s~~h~dc~-~~~~~~ps~ss~~k~p~~s~~ 444 (613)
T KOG4299|consen 410 DCQYEQSPEHPDCK-DDSKALPSLSSKWKCPRVSPY 444 (613)
T ss_pred ccccccCCCCcccc-chhhhCCCCcccccCCCCCCC
Confidence 89999999999999 454444443 4688865443
No 79
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.42 E-value=0.066 Score=59.01 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=43.4
Q ss_pred Cccccccccccccccc---cceecCCCCcccHhHHhhhcccCCCCCCccccccceeecc
Q 000915 21 NFECGRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVP 76 (1225)
Q Consensus 21 ssEd~tCpICLE~fsD---~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I~~vP 76 (1225)
......|||+...|.. ...+.+|||+|+..||.+.. ....||+|..+|.....++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEE
Confidence 3556799999988853 35678999999999999874 4567999999998644443
No 80
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.29 E-value=0.028 Score=67.04 Aligned_cols=49 Identities=29% Similarity=0.678 Sum_probs=39.0
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhhhcc-----cCCCCCCccccccc
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST-----ITNLCPLCQGEFQL 71 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK-----~knSCPLCRaeFs~ 71 (1225)
.....|.+|.++-.+ .+...|.|.||..||.++.. ....||.|-..+..
T Consensus 534 k~~~~C~lc~d~aed-~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED-YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhh-hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 456789999999888 56667999999999987753 25679999876553
No 81
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.79 E-value=0.049 Score=61.56 Aligned_cols=43 Identities=28% Similarity=0.636 Sum_probs=37.8
Q ss_pred cccccccccccccceecCCCCcccHhHHhhhc-ccCCCCCCccc
Q 000915 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWS-TITNLCPLCQG 67 (1225)
Q Consensus 25 ~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWl-K~knSCPLCRa 67 (1225)
+.|+.|...+..++...+|+|.||..||...+ +....||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 78999999999888888999999999998754 56788999965
No 82
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.037 Score=64.60 Aligned_cols=47 Identities=36% Similarity=0.740 Sum_probs=37.3
Q ss_pred ccccccccccccc----cceecCCCCcccHhHHhhhccc--CCCCCCcccccc
Q 000915 24 CGRCGICMDVVID----RGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQ 70 (1225)
Q Consensus 24 d~tCpICLE~fsD----~~vL~pCgHtFC~~CIqqWlK~--knSCPLCRaeFs 70 (1225)
..+|+||++.+.- +.+.+.|+|-|--.||+.|+.+ ...||.|...-.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 3589999999742 3567789999999999999843 567999976543
No 83
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.092 Score=60.14 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=40.4
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCcccc
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGE 68 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRae 68 (1225)
-....|+||+....++.++..-|.+||+.||-.+..+...||+-..+
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 44568999999988888888889999999999999999999985444
No 84
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=91.61 E-value=0.027 Score=71.65 Aligned_cols=129 Identities=16% Similarity=0.252 Sum_probs=74.5
Q ss_pred cCccccccccccccccccceecCCCCcccHhHHhhhcc----cCCCCCCcccc-ccc-e-eecccccCCCCCcccCcccc
Q 000915 20 LNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST----ITNLCPLCQGE-FQL-I-TCVPVYDTIGSNNIDGDSLS 92 (1225)
Q Consensus 20 sssEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK----~knSCPLCRae-Fs~-I-~~vPvyD~iG~eiVdn~pLr 92 (1225)
-...+..|-+|.+.... ..+..|+..+|..|...-.. -.+.|-+|+.. +.. + +..|. ....+. ++
T Consensus 340 ~~~~ddhcrf~~d~~~~-lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~-----~K~~~~--iR 411 (1414)
T KOG1473|consen 340 EIEYDDHCRFCHDLGDL-LCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPP-----SKNVDS--IR 411 (1414)
T ss_pred ceeecccccccCcccce-eecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccCh-----hhcccc--ee
Confidence 34556789999988654 66778999999999765432 24457777531 110 0 00000 000000 00
Q ss_pred CCCccchhhcccCCCCCCcccCcccccccCCCCCCCCCCCCccccCCCcccccccCC-CCccccc-cccC--CCCCCCCC
Q 000915 93 RGEDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDS-CDLWYHA-FCVG--FDPEGTCE 168 (1225)
Q Consensus 93 rRdD~~sEEEDQTlSfPS~yIDEe~viC~D~~~CkVCgGs~~~~DdddeD~LLlCDs-CD~aYH~-~CLg--PPLe~VPe 168 (1225)
. ... +.+ ..-+.+| --..+|.||+ ..+++++|++ |...||. .||+ .-...+++
T Consensus 412 ~-~~i---G~d--r~gr~yw--------fi~rrl~Ie~---------~det~l~yysT~pqly~ll~cLd~~~~e~~L~d 468 (1414)
T KOG1473|consen 412 H-TPI---GRD--RYGRKYW--------FISRRLRIEG---------MDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCD 468 (1414)
T ss_pred c-cCC---CcC--ccccchh--------ceeeeeEEec---------CCCcEEEEecCcHHHHHHHHHhchHHHHHhhcc
Confidence 0 000 000 0000111 1124688993 2357999998 9999999 9999 55677899
Q ss_pred CcccCCCCCCC
Q 000915 169 DTWLCPRCVAE 179 (1225)
Q Consensus 169 GDWfCP~C~~~ 179 (1225)
+-|+|+.|.-.
T Consensus 469 ~i~~~~ee~~r 479 (1414)
T KOG1473|consen 469 GIWERREEIIR 479 (1414)
T ss_pred chhhhHHHHHH
Confidence 99999999665
No 85
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=91.47 E-value=0.088 Score=55.71 Aligned_cols=52 Identities=23% Similarity=0.539 Sum_probs=38.4
Q ss_pred CCCCCCCCCccccCCCcccccccCCCCccccccccCCCC------CCCCCCc--ccCCCCCCC
Q 000915 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDP------EGTCEDT--WLCPRCVAE 179 (1225)
Q Consensus 125 ~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPL------e~VPeGD--WfCP~C~~~ 179 (1225)
.|.+|+.. +++.+.+.|++|.+|-..||..|||+-. +-|.++. .-|.+|..-
T Consensus 1 ~C~~C~~~---g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYE---GDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCC---CCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 37888543 4555677999999999999999999973 2333333 369999765
No 86
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.46 E-value=0.15 Score=58.88 Aligned_cols=59 Identities=25% Similarity=0.467 Sum_probs=46.1
Q ss_pred CCcccccCccccccccccccccccceecCCCCcccHhHHhhh--cccCCCCCCcccccccee
Q 000915 14 NTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNW--STITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 14 ~~edDssssEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqW--lK~knSCPLCRaeFs~I~ 73 (1225)
.++.|.++.+...|.||-+.++- ..+.||+|..|..|.-+. +..+..||+||.....+.
T Consensus 51 tsSaddtDEen~~C~ICA~~~TY-s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 51 TSSADDTDEENMNCQICAGSTTY-SARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccccccccccceeEEecCCceE-EEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 34566667778899999999875 566779999999997553 356889999999877644
No 87
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.92 E-value=0.11 Score=57.23 Aligned_cols=48 Identities=31% Similarity=0.773 Sum_probs=34.6
Q ss_pred cccccccccc-cccceecCCCCcccHhHHhhhcccCCCCCCccccccceee
Q 000915 25 GRCGICMDVV-IDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITC 74 (1225)
Q Consensus 25 ~tCpICLE~f-sD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I~~ 74 (1225)
..|-.|..-- .++-.+..|.|+||..|...-.. ..||+|++.+..+..
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir~i~l 52 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSIRIIQL 52 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc--cccccccceeeeeec
Confidence 4576665432 44568899999999999765432 289999999776654
No 88
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=0.02 Score=66.76 Aligned_cols=46 Identities=24% Similarity=0.441 Sum_probs=33.7
Q ss_pred ccccccccccccccc--cceecCCCCcccHhHHhhhcc--------cCCCCCCccc
Q 000915 22 FECGRCGICMDVVID--RGVLDCCQHWFCFACIDNWST--------ITNLCPLCQG 67 (1225)
Q Consensus 22 sEd~tCpICLE~fsD--~~vL~pCgHtFC~~CIqqWlK--------~knSCPLCRa 67 (1225)
..-..|.||++.... .....||+|+||..|+..+.. ....||-|+-
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 445689999998643 346678999999999887753 2556877654
No 89
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=90.03 E-value=0.27 Score=51.81 Aligned_cols=52 Identities=21% Similarity=0.593 Sum_probs=38.3
Q ss_pred cCccccccccccccccccceecCC--CC---cccHhHHhhhccc--CCCCCCcccccccee
Q 000915 20 LNFECGRCGICMDVVIDRGVLDCC--QH---WFCFACIDNWSTI--TNLCPLCQGEFQLIT 73 (1225)
Q Consensus 20 sssEd~tCpICLE~fsD~~vL~pC--gH---tFC~~CIqqWlK~--knSCPLCRaeFs~I~ 73 (1225)
.+..+..|-||++.... ...|| .. +-|..|++.|... ...|++|+.+|....
T Consensus 4 ~s~~~~~CRIC~~~~~~--~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 4 VSLMDKCCWICKDEYDV--VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred cCCCCCeeEecCCCCCC--ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 34556799999988543 23344 44 4699999999854 678999999998754
No 90
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.86 E-value=0.11 Score=60.68 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=37.5
Q ss_pred ccccccccccccccc---ceecCCCCcccHhHHhhhccc--CCCCCCcccccc
Q 000915 23 ECGRCGICMDVVIDR---GVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQ 70 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~---~vL~pCgHtFC~~CIqqWlK~--knSCPLCRaeFs 70 (1225)
-+..|..|-+.+.-+ ....||.|+||..|+...+.+ ..+||.||+-..
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 357899999987432 445689999999999998755 678999995444
No 91
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=89.85 E-value=0.12 Score=64.77 Aligned_cols=50 Identities=26% Similarity=0.546 Sum_probs=38.2
Q ss_pred Ccccccccccccccccc--c-eecCCCCcccHhHHhhhcc-------cCCCCCCcccccc
Q 000915 21 NFECGRCGICMDVVIDR--G-VLDCCQHWFCFACIDNWST-------ITNLCPLCQGEFQ 70 (1225)
Q Consensus 21 ssEd~tCpICLE~fsD~--~-vL~pCgHtFC~~CIqqWlK-------~knSCPLCRaeFs 70 (1225)
..+...|.||++.+... . ....|-|+||+.||..|+. ..|.||.|+....
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 35567899999998542 2 2456899999999999984 2678999985443
No 92
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.84 E-value=0.26 Score=54.99 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=43.5
Q ss_pred cccccccccccccccc---ceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 22 FECGRCGICMDVVIDR---GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~---~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
+....|+||.+.+.+. .++.+|+|+||+.|.+........||+|..+..-
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 3667899999999753 5788999999999999999999999999887764
No 93
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.32 E-value=0.085 Score=59.89 Aligned_cols=48 Identities=25% Similarity=0.800 Sum_probs=35.4
Q ss_pred cccccccccccccc--ceecCCCCcccHhHHhhhc------------------c-----cCCCCCCccccccc
Q 000915 24 CGRCGICMDVVIDR--GVLDCCQHWFCFACIDNWS------------------T-----ITNLCPLCQGEFQL 71 (1225)
Q Consensus 24 d~tCpICLE~fsD~--~vL~pCgHtFC~~CIqqWl------------------K-----~knSCPLCRaeFs~ 71 (1225)
...|.|||-.|.+. .....|-|+||+.|+-+++ . ....||+||..+..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 35799999888653 3567899999999986543 1 14569999987654
No 94
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=88.88 E-value=0.31 Score=42.39 Aligned_cols=44 Identities=20% Similarity=0.486 Sum_probs=21.1
Q ss_pred ccccccccc--cc-ceecCCCCcccHhHHhhhcc-cCCCCCCcccccc
Q 000915 27 CGICMDVVI--DR-GVLDCCQHWFCFACIDNWST-ITNLCPLCQGEFQ 70 (1225)
Q Consensus 27 CpICLE~fs--D~-~vL~pCgHtFC~~CIqqWlK-~knSCPLCRaeFs 70 (1225)
|++|.+.+. +. ..+=+|++.+|..|...-.+ ....||-||.+|.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 789998873 22 23447999999999766654 4788999998863
No 95
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=88.46 E-value=0.24 Score=63.66 Aligned_cols=49 Identities=22% Similarity=0.483 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 122 D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
.++.|.+|. +...+++|..|++-||+.|+.+|...+|...|.|--|..-
T Consensus 343 ~ddhcrf~~---------d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~h 391 (1414)
T KOG1473|consen 343 YDDHCRFCH---------DLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIH 391 (1414)
T ss_pred ecccccccC---------cccceeecccCCceEEeeecCCccccCCCccchhhhhhhh
Confidence 356799994 2345899999999999999999999999999999999643
No 96
>PHA02862 5L protein; Provisional
Probab=87.13 E-value=0.36 Score=50.34 Aligned_cols=48 Identities=25% Similarity=0.642 Sum_probs=36.3
Q ss_pred ccccccccccccccceecCC-----CCcccHhHHhhhccc--CCCCCCcccccccee
Q 000915 24 CGRCGICMDVVIDRGVLDCC-----QHWFCFACIDNWSTI--TNLCPLCQGEFQLIT 73 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~pC-----gHtFC~~CIqqWlK~--knSCPLCRaeFs~I~ 73 (1225)
+..|-||++.-.+. ..|| ..+-|..|+++|... ...|++|+.+|....
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 35899999886542 2444 446899999999854 678999999997543
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.95 E-value=0.29 Score=56.47 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=35.0
Q ss_pred cccccccccccc--ccc-ceecCCCCcccHhHHhhhccc-CCCCCCccccccc
Q 000915 23 ECGRCGICMDVV--IDR-GVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEFQL 71 (1225)
Q Consensus 23 Ed~tCpICLE~f--sD~-~vL~pCgHtFC~~CIqqWlK~-knSCPLCRaeFs~ 71 (1225)
+++.|+.|++.+ .++ -++-+||...|..|...-... ...||.||..|.-
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 446799999986 343 355679999999994433333 5679999987654
No 98
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=86.84 E-value=0.61 Score=59.66 Aligned_cols=105 Identities=21% Similarity=0.357 Sum_probs=63.9
Q ss_pred CCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCCCCC----------CC-cccccc
Q 000915 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQ----------NS-SIDLTQ 190 (1225)
Q Consensus 122 D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~~p~----------ga-~~sl~q 190 (1225)
+...|..|.+. ..+..+ .|++|...||.+|+.+++..++.++|.|+.|...... +. .|.+..
T Consensus 154 ~~~~~~~~~k~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~ 226 (904)
T KOG1246|consen 154 DYPQCNTCSKG------KEEKLL-LCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPK 226 (904)
T ss_pred cchhhhccccC------CCccce-ecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccch
Confidence 45568888533 122345 9999999999999999999999999999999776311 11 111111
Q ss_pred --ccc---CCCCCCCCCCCcccccccccccccccccCCCceEEEEeecCC
Q 000915 191 --STN---DQSGPENANGDHLAESLFPRKVSVSVADAGETAVVVSMIGEE 235 (1225)
Q Consensus 191 --rl~---kQ~~~e~~s~r~lAEd~fe~EVSvsVAd~GETA~VVSmVG~~ 235 (1225)
... +........+.....+.+++++|..+....+. |....|.+
T Consensus 227 f~~~~~~~~~~~~~~~~~~~~~~~~vE~e~w~~v~~~~~~--~~~~~g~d 274 (904)
T KOG1246|consen 227 FEEYADNFKKDYFPKSKNSPDSTEDVEKEFWRLVASNLES--VEVLYGAD 274 (904)
T ss_pred hhhHhhhhhccccccccCCCCchHHHHHHHHHhhcccccc--eeeeeccc
Confidence 111 00011101111122558889999999888333 33355655
No 99
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.84 E-value=0.36 Score=53.36 Aligned_cols=45 Identities=24% Similarity=0.513 Sum_probs=35.8
Q ss_pred cccccccccccc-----cceecCCCCcccHhHHhhhccc-CCCCCCccccc
Q 000915 25 GRCGICMDVVID-----RGVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEF 69 (1225)
Q Consensus 25 ~tCpICLE~fsD-----~~vL~pCgHtFC~~CIqqWlK~-knSCPLCRaeF 69 (1225)
..|-||-+.|.. .+....|||+||..|+.....+ ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 579999988853 2455669999999999887654 66799999875
No 100
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=86.41 E-value=0.28 Score=56.04 Aligned_cols=46 Identities=33% Similarity=0.686 Sum_probs=34.2
Q ss_pred ccccccccccccceecCCCCcccHhHHhhhcccCCCCCCcccccccee
Q 000915 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 26 tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I~ 73 (1225)
.|--|--.+..-+.+-+|.|.||+.|...-. ...||.|-..+..|.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~--dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSDS--DKICPLCDDRVQRIE 137 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcCc--cccCcCcccHHHHHH
Confidence 5677766665556777899999999965432 568999988777644
No 101
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.35 E-value=0.17 Score=65.73 Aligned_cols=46 Identities=28% Similarity=0.742 Sum_probs=41.4
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccc
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRa 67 (1225)
.....|.||++.+...+.+..|+|.||-.|+..|...+..||.|+.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 4456899999999877888889999999999999999999999984
No 102
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=86.08 E-value=0.54 Score=49.62 Aligned_cols=51 Identities=33% Similarity=0.581 Sum_probs=34.3
Q ss_pred cccccccccccccccceecCC------------CCc-ccHhHHhhhcc-------------------------------c
Q 000915 23 ECGRCGICMDVVIDRGVLDCC------------QHW-FCFACIDNWST-------------------------------I 58 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~~vL~pC------------gHt-FC~~CIqqWlK-------------------------------~ 58 (1225)
++.+|+|||+.-++. +++-| .-. -|-.|++++.+ .
T Consensus 1 ed~~CpICme~PHNA-VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T PF07800_consen 1 EDVTCPICMEHPHNA-VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQP 79 (162)
T ss_pred CCccCceeccCCCce-EEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccc
Confidence 467999999998873 43323 222 35578887642 1
Q ss_pred CCCCCCccccccceee
Q 000915 59 TNLCPLCQGEFQLITC 74 (1225)
Q Consensus 59 knSCPLCRaeFs~I~~ 74 (1225)
...||+||-.+..|..
T Consensus 80 ~L~CPLCRG~V~GWtv 95 (162)
T PF07800_consen 80 ELACPLCRGEVKGWTV 95 (162)
T ss_pred cccCccccCceeceEE
Confidence 4469999998887664
No 103
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=86.02 E-value=0.38 Score=62.84 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=38.5
Q ss_pred Cccccccccccccc-c-ccceecCCCCcccHhHHhhhccc----------CCCCCCccccccceee
Q 000915 21 NFECGRCGICMDVV-I-DRGVLDCCQHWFCFACIDNWSTI----------TNLCPLCQGEFQLITC 74 (1225)
Q Consensus 21 ssEd~tCpICLE~f-s-D~~vL~pCgHtFC~~CIqqWlK~----------knSCPLCRaeFs~I~~ 74 (1225)
...++.|-||+..- . -++.-..|+|.||+.|.+.-+++ -.+||+|+..+..+.+
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~L 3548 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVL 3548 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHH
Confidence 34567999999663 2 23444569999999998654333 2369999998887664
No 104
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=85.61 E-value=0.37 Score=57.80 Aligned_cols=53 Identities=26% Similarity=0.635 Sum_probs=39.9
Q ss_pred CCCCCCCCCCccccCCCcccccccCCCCccccccccCCCC-----CCCC---CCcccCCCCCCCC
Q 000915 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDP-----EGTC---EDTWLCPRCVAEV 180 (1225)
Q Consensus 124 ~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPL-----e~VP---eGDWfCP~C~~~~ 180 (1225)
..|.||-|. ...+.+-++.||.|+.-.|-.|.|... .... ...|||--|..+.
T Consensus 120 ~iCcVClg~----rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gv 180 (707)
T KOG0957|consen 120 VICCVCLGQ----RSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGV 180 (707)
T ss_pred eEEEEeecC----ccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCC
Confidence 379999654 244566799999999999999999761 1112 2579999998883
No 105
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=85.33 E-value=0.38 Score=59.93 Aligned_cols=45 Identities=31% Similarity=0.747 Sum_probs=36.2
Q ss_pred cccccccccccccceecCCCCcccHhHHhhhccc--CCCCCCccccccc
Q 000915 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQL 71 (1225)
Q Consensus 25 ~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~--knSCPLCRaeFs~ 71 (1225)
..|.||++ .+.+++..|+|.||..|+...... ...||.||..+..
T Consensus 455 ~~c~ic~~--~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD--LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc--cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 68999999 555899999999999999875543 3369999987653
No 106
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=85.10 E-value=0.37 Score=44.94 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=25.4
Q ss_pred cccccccccccccccc-ceecCCCCcccHhHHh
Q 000915 22 FECGRCGICMDVVIDR-GVLDCCQHWFCFACID 53 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~-~vL~pCgHtFC~~CIq 53 (1225)
.+...|++|...+... ...-||+|.||+.|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3456799999998653 4566899999999975
No 107
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=84.92 E-value=0.26 Score=60.63 Aligned_cols=54 Identities=24% Similarity=0.521 Sum_probs=39.1
Q ss_pred CCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCC-CCCcccCCCCCCC
Q 000915 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGT-CEDTWLCPRCVAE 179 (1225)
Q Consensus 122 D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~V-PeGDWfCP~C~~~ 179 (1225)
...+|.+|+.. + .+.++.|+.|..|...||.+|+...+... =.+-|.||.|+.-
T Consensus 17 ~~~mc~l~~s~---G-~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 17 VCLMCPLCGSS---G-KGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhhhhhhhccc---c-ccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 34589999544 2 34567899999999999999999654222 1234999999764
No 108
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=84.86 E-value=0.56 Score=58.07 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=20.9
Q ss_pred CCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 43 CQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 43 CgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
=|-|||..|-.+-+.....|-+|-.....
T Consensus 46 tGpWfCrKCesqeraarvrCeLCP~kdGA 74 (900)
T KOG0956|consen 46 TGPWFCRKCESQERAARVRCELCPHKDGA 74 (900)
T ss_pred CCchhhhhhhhhhhhccceeecccCcccc
Confidence 47789999976655556778888655544
No 109
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=83.57 E-value=0.84 Score=54.46 Aligned_cols=52 Identities=29% Similarity=0.530 Sum_probs=35.5
Q ss_pred CCCCCCCCCccccCCCcccccccCCCCccccccccC--------CCCCC---CCCCcccCCCCCCC
Q 000915 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVG--------FDPEG---TCEDTWLCPRCVAE 179 (1225)
Q Consensus 125 ~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLg--------PPLe~---VPeGDWfCP~C~~~ 179 (1225)
.|.+|.+- ++..+.-.++.||.|+.|.|+.|.= +...+ ..++.++|..|...
T Consensus 130 ~C~iC~kf---D~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 130 MCCICSKF---DDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred CccccCCc---ccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence 56677543 3333444789999999999999963 22221 23668999999776
No 110
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=83.47 E-value=1.1 Score=56.29 Aligned_cols=37 Identities=0% Similarity=-0.179 Sum_probs=34.0
Q ss_pred cccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 143 TSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 143 ~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
.+..|++|++.||.+|+.|....++..-|.|..|...
T Consensus 188 k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~~ 224 (696)
T KOG0383|consen 188 KLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKGA 224 (696)
T ss_pred cccccccchhhhhheeccccccccchhhhhhcccccc
Confidence 4688999999999999999999999999999999877
No 111
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.16 E-value=0.47 Score=59.83 Aligned_cols=46 Identities=24% Similarity=0.557 Sum_probs=37.0
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCcccccc
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs 70 (1225)
...-.|.+|--.+.-|.+--.|+|.||..|+. +....||.|+....
T Consensus 838 ~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 838 FQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELR 883 (933)
T ss_pred eeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence 34458999999988766666799999999987 45678999988544
No 112
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=81.97 E-value=0.74 Score=41.20 Aligned_cols=44 Identities=30% Similarity=0.601 Sum_probs=33.4
Q ss_pred cccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 25 ~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
..|-.|...-.. ..+.+|+|..|..|..-+ +-+.||+|..+|..
T Consensus 8 ~~~~~~~~~~~~-~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTK-GTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEccccccc-cccccccceeeccccChh--hccCCCCCCCcccC
Confidence 467777766544 677789999999996543 46789999998864
No 113
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.26 E-value=0.62 Score=54.18 Aligned_cols=46 Identities=28% Similarity=0.605 Sum_probs=33.6
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
.-...|.||++...+ ...-+|||.-| |+.- .+....||+||.....
T Consensus 303 ~~p~lcVVcl~e~~~-~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS-AVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccc-eeeecCCcEEE--chHH-HhhCCCCchhHHHHHH
Confidence 345689999999988 55556999966 6543 3334559999987664
No 114
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.51 E-value=0.64 Score=58.25 Aligned_cols=54 Identities=9% Similarity=0.098 Sum_probs=38.3
Q ss_pred ccccccccccccccc------cceecCCCCcccHhHHhhhccc------CCCCCCccccccceeec
Q 000915 22 FECGRCGICMDVVID------RGVLDCCQHWFCFACIDNWSTI------TNLCPLCQGEFQLITCV 75 (1225)
Q Consensus 22 sEd~tCpICLE~fsD------~~vL~pCgHtFC~~CIqqWlK~------knSCPLCRaeFs~I~~v 75 (1225)
....+|.||.--+.+ .+.+..|.|.||..||..|..+ .-.|++|..-|..|+++
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~ 159 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC 159 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh
Confidence 444566666544433 2444569999999999999854 56799999888877753
No 115
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=77.03 E-value=1.2 Score=45.98 Aligned_cols=48 Identities=31% Similarity=0.882 Sum_probs=38.1
Q ss_pred ccccccccccccccceec---CCCCcccHhHHhh-hc--ccCCCCCCccccccc
Q 000915 24 CGRCGICMDVVIDRGVLD---CCQHWFCFACIDN-WS--TITNLCPLCQGEFQL 71 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~---pCgHtFC~~CIqq-Wl--K~knSCPLCRaeFs~ 71 (1225)
--.|-||.+.-.+..++. +||...|..|--. |- .....||.|+..|..
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 357999999987765554 6999999999654 64 447889999999875
No 116
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=75.51 E-value=1.2 Score=38.48 Aligned_cols=42 Identities=24% Similarity=0.538 Sum_probs=22.8
Q ss_pred cccccccccccccceecCCCCcccHhHHhhhc-----ccCCCCCCccc
Q 000915 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWS-----TITNLCPLCQG 67 (1225)
Q Consensus 25 ~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWl-----K~knSCPLCRa 67 (1225)
+.|+|....+..++.-..|.|.-|++ +..|. ...+.||+|.+
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 68999999998888888899997754 33343 23678999976
No 117
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.26 E-value=1.6 Score=47.00 Aligned_cols=49 Identities=31% Similarity=0.656 Sum_probs=33.7
Q ss_pred cccccccccccccc-----c-ceecCCCCcccHhHHhhhccc-----------CCCCCCccccccc
Q 000915 23 ECGRCGICMDVVID-----R-GVLDCCQHWFCFACIDNWSTI-----------TNLCPLCQGEFQL 71 (1225)
Q Consensus 23 Ed~tCpICLE~fsD-----~-~vL~pCgHtFC~~CIqqWlK~-----------knSCPLCRaeFs~ 71 (1225)
+-..|.||+..--+ . +--..|+..||.-|+..|++. -..||.|..++..
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 34568888866322 1 222369999999999999853 1249999887653
No 118
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=72.49 E-value=1.9 Score=38.51 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCccccCCCcccccccCCCCccccccccCCC
Q 000915 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFD 162 (1225)
Q Consensus 123 ~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPP 162 (1225)
...|.+|+..... .+-++.|..|...||..|...-
T Consensus 5 ~~~C~~Cg~~~~~-----~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 5 GCKCPVCGKKFKD-----GDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred CccChhhCCcccC-----CCCEEECCCCCCcccHHHHhhC
Confidence 3579999755322 2348999999999999998554
No 119
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.94 E-value=2.4 Score=47.20 Aligned_cols=47 Identities=21% Similarity=0.538 Sum_probs=34.9
Q ss_pred ccccccccccccccc-ceecCCCCcccHhHHhhhccc--------CCCCCCccccc
Q 000915 23 ECGRCGICMDVVIDR-GVLDCCQHWFCFACIDNWSTI--------TNLCPLCQGEF 69 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~-~vL~pCgHtFC~~CIqqWlK~--------knSCPLCRaeF 69 (1225)
..-.|..|-..+... .+-..|-|.||..|+..|..+ -..||.|..++
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 346799998887431 344469999999999999743 34699998753
No 120
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=71.18 E-value=3.1 Score=35.12 Aligned_cols=39 Identities=21% Similarity=0.554 Sum_probs=21.7
Q ss_pred cccccccccccceec--CCCCcccHhHHhhhcccCC--CCCCc
Q 000915 27 CGICMDVVIDRGVLD--CCQHWFCFACIDNWSTITN--LCPLC 65 (1225)
Q Consensus 27 CpICLE~fsD~~vL~--pCgHtFC~~CIqqWlK~kn--SCPLC 65 (1225)
|.+|.+.+..-.... .|+-.+|..|+..+..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778998875422333 5999999999999776533 69988
No 121
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.43 E-value=1.7 Score=48.94 Aligned_cols=50 Identities=28% Similarity=0.678 Sum_probs=36.5
Q ss_pred ccccccccccccccc---ceecCC-----CCcccHhHHhhhccc--------CCCCCCccccccce
Q 000915 23 ECGRCGICMDVVIDR---GVLDCC-----QHWFCFACIDNWSTI--------TNLCPLCQGEFQLI 72 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~---~vL~pC-----gHtFC~~CIqqWlK~--------knSCPLCRaeFs~I 72 (1225)
.+..|=||+..=.|. .+..|| .|+-|..|+..|... ...||.|+.+|...
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 356899999775432 355566 477999999999742 44699999987753
No 122
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.21 E-value=2.1 Score=48.93 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=30.3
Q ss_pred CccccccccccccccccceecCC----CCcccHhHHhhhccc-----CCCCCC
Q 000915 21 NFECGRCGICMDVVIDRGVLDCC----QHWFCFACIDNWSTI-----TNLCPL 64 (1225)
Q Consensus 21 ssEd~tCpICLE~fsD~~vL~pC----gHtFC~~CIqqWlK~-----knSCPL 64 (1225)
....++|.+|.+.+.|--+.. | .|.|||.|-++..+. ..+||.
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQ-CPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CCCceeehhhhhhhccCceee-cCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 456689999999998753333 4 689999997766543 345654
No 123
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=67.24 E-value=2.5 Score=36.14 Aligned_cols=39 Identities=21% Similarity=0.750 Sum_probs=25.2
Q ss_pred ccccccccccc-ceecCCC--C---cccHhHHhhhcc--cCCCCCCc
Q 000915 27 CGICMDVVIDR-GVLDCCQ--H---WFCFACIDNWST--ITNLCPLC 65 (1225)
Q Consensus 27 CpICLE~fsD~-~vL~pCg--H---tFC~~CIqqWlK--~knSCPLC 65 (1225)
|-||++..... ..+.||. - +.|..|+.+|.. ....|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67999886432 3555664 3 589999999986 46679887
No 124
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.21 E-value=3.3 Score=45.20 Aligned_cols=40 Identities=25% Similarity=0.651 Sum_probs=30.3
Q ss_pred cccccccccccceecCCCCc-ccHhHHhhhcccCCCCCCccccccc
Q 000915 27 CGICMDVVIDRGVLDCCQHW-FCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 27 CpICLE~fsD~~vL~pCgHt-FC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
|-+|.+.-.. ..+.||.|. +|..|-.. ...||+|+.....
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCce-EEeecccceEeccccccc----CccCCCCcChhhc
Confidence 8888877554 677899998 99999432 4569999886543
No 125
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=66.54 E-value=2.1 Score=51.10 Aligned_cols=43 Identities=16% Similarity=0.456 Sum_probs=27.8
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccc
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRa 67 (1225)
...++|..|...+..+.+-.-=+..||-.|.+.-+++ |-.|..
T Consensus 300 v~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlek---C~~Cg~ 342 (468)
T KOG1701|consen 300 VQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEK---CNKCGE 342 (468)
T ss_pred ccceehHhhhhhhccccccccCCcccchHHHHHHHHH---Hhhhhh
Confidence 5667889998887655443333666888887766544 555544
No 126
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=65.95 E-value=3.5 Score=47.26 Aligned_cols=51 Identities=22% Similarity=0.454 Sum_probs=37.1
Q ss_pred cCccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCcccccccee
Q 000915 20 LNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 20 sssEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I~ 73 (1225)
...+-..||||.+.+..+..--.=||.-|..|-. +..+.||.||.++..+.
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~~R 94 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT---KVSNKCPTCRLPIGNIR 94 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhh---hhcccCCccccccccHH
Confidence 3455678999999998643321127999999953 45788999999988543
No 127
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=65.33 E-value=3.9 Score=46.86 Aligned_cols=46 Identities=24% Similarity=0.551 Sum_probs=34.4
Q ss_pred ccccccccc-ccc---ceecCCCCcccHhHHhhh-cccCCCCCCccccccc
Q 000915 26 RCGICMDVV-IDR---GVLDCCQHWFCFACIDNW-STITNLCPLCQGEFQL 71 (1225)
Q Consensus 26 tCpICLE~f-sD~---~vL~pCgHtFC~~CIqqW-lK~knSCPLCRaeFs~ 71 (1225)
.|++|.... ..+ ..+.+|+|..|-.|...- ..+...||.|......
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 599998663 222 455699999999999874 4568889999765543
No 128
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=65.05 E-value=1.8 Score=48.43 Aligned_cols=52 Identities=25% Similarity=0.556 Sum_probs=36.7
Q ss_pred cCccccccccccccc-ccc---ceecC-CCCcccHhHHhhh-cccCCCCC--Cccccccc
Q 000915 20 LNFECGRCGICMDVV-IDR---GVLDC-CQHWFCFACIDNW-STITNLCP--LCQGEFQL 71 (1225)
Q Consensus 20 sssEd~tCpICLE~f-sD~---~vL~p-CgHtFC~~CIqqW-lK~knSCP--LCRaeFs~ 71 (1225)
....+..||||.... -.+ ..+.| |-|..|-.|..+- ......|| -|.+-+..
T Consensus 6 ~~~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 6 EEMEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred hhhhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 345667999999763 222 23445 9999999999884 45577899 78765544
No 129
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=62.51 E-value=7.4 Score=45.82 Aligned_cols=52 Identities=25% Similarity=0.586 Sum_probs=33.3
Q ss_pred cCcccccccccccccccc-----c-----------eecCCCC-----cccHhHHhhhc-------------ccCCCCCCc
Q 000915 20 LNFECGRCGICMDVVIDR-----G-----------VLDCCQH-----WFCFACIDNWS-------------TITNLCPLC 65 (1225)
Q Consensus 20 sssEd~tCpICLE~fsD~-----~-----------vL~pCgH-----tFC~~CIqqWl-------------K~knSCPLC 65 (1225)
...+.+.|--|+..-.+. + ...+|.. ..|..|+-+|. ..+-.||.|
T Consensus 267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 445678899998653221 1 0113333 36889998885 225579999
Q ss_pred cccccc
Q 000915 66 QGEFQL 71 (1225)
Q Consensus 66 RaeFs~ 71 (1225)
|+.|-.
T Consensus 347 Ra~FCi 352 (358)
T PF10272_consen 347 RAKFCI 352 (358)
T ss_pred ccccee
Confidence 999875
No 130
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=60.29 E-value=4.2 Score=44.94 Aligned_cols=47 Identities=21% Similarity=0.558 Sum_probs=39.3
Q ss_pred cccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 25 ~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
-.|.+|...+-.-..+..|+-.||..|++.+......||.|..-|..
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcccCc
Confidence 48999999864335778899999999999999888999999776653
No 131
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=59.83 E-value=3.9 Score=48.89 Aligned_cols=33 Identities=27% Similarity=0.552 Sum_probs=27.3
Q ss_pred cccccccccccccccceecCCCCcccHhHHhhhc
Q 000915 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWS 56 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWl 56 (1225)
++..|+||-..|.+ +.+.+|+|..|..|...-+
T Consensus 3 eelkc~vc~~f~~e-piil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE-PIILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccC-ceEeecccHHHHHHHHhhc
Confidence 56799999999988 5666799999999976543
No 132
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=59.35 E-value=5.3 Score=41.43 Aligned_cols=41 Identities=29% Similarity=0.597 Sum_probs=28.4
Q ss_pred ccccccccccccc-cc-eecCCC------CcccHhHHhhhcccCCCCCC
Q 000915 24 CGRCGICMDVVID-RG-VLDCCQ------HWFCFACIDNWSTITNLCPL 64 (1225)
Q Consensus 24 d~tCpICLE~fsD-~~-vL~pCg------HtFC~~CIqqWlK~knSCPL 64 (1225)
...|.||++.+.+ .+ +.-+|+ |.||..|+.+|......=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPf 74 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPF 74 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCc
Confidence 5689999999865 33 333565 55999999999644433333
No 133
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=58.86 E-value=5.8 Score=45.24 Aligned_cols=44 Identities=20% Similarity=0.491 Sum_probs=35.3
Q ss_pred ccccccccccccc---cceecCCCCcccHhHHhhhcccCCCCCCccc
Q 000915 24 CGRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (1225)
Q Consensus 24 d~tCpICLE~fsD---~~vL~pCgHtFC~~CIqqWlK~knSCPLCRa 67 (1225)
...|+||.+.+.. .+...+|+|+.|+.|.+........||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3459999988642 3455679999999999988766688999987
No 134
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=57.46 E-value=3.8 Score=46.08 Aligned_cols=46 Identities=26% Similarity=0.418 Sum_probs=31.2
Q ss_pred cccccccccccccccceecC--CC-CcccHhHHhhh--cccCCCCCCcccc
Q 000915 23 ECGRCGICMDVVIDRGVLDC--CQ-HWFCFACIDNW--STITNLCPLCQGE 68 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~~vL~p--Cg-HtFC~~CIqqW--lK~knSCPLCRae 68 (1225)
+...|.-++..+...+-+++ |. -|||+.|+--- -+..++||.|+..
T Consensus 218 e~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 218 EPTYCICNQVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCEEEEecccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 44566544444555555665 99 99999997532 2457999999875
No 135
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=56.56 E-value=7.1 Score=49.75 Aligned_cols=57 Identities=23% Similarity=0.548 Sum_probs=40.1
Q ss_pred ccccCccccccccccccc-cccceecCCCC-----cccHhHHhhhccc--CCCCCCcccccccee
Q 000915 17 NDLLNFECGRCGICMDVV-IDRGVLDCCQH-----WFCFACIDNWSTI--TNLCPLCQGEFQLIT 73 (1225)
Q Consensus 17 dDssssEd~tCpICLE~f-sD~~vL~pCgH-----tFC~~CIqqWlK~--knSCPLCRaeFs~I~ 73 (1225)
+..-+.++..|-||...- .+-+...||.. +.|..|+-+|..- ...|-+|..+|.+-.
T Consensus 5 ~~~mN~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 5 NTPMNEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CCCCCccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 334445568999999663 33344445543 3899999999864 677999999887644
No 136
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.13 E-value=4.7 Score=51.69 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=27.2
Q ss_pred cccccccccccccccc-ceecCCCCcccHhHHhhh
Q 000915 22 FECGRCGICMDVVIDR-GVLDCCQHWFCFACIDNW 55 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~-~vL~pCgHtFC~~CIqqW 55 (1225)
..+++|.+|...+..+ -.+-+|||.||..||.+-
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 3467899999997544 456789999999999764
No 137
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=55.35 E-value=6 Score=34.97 Aligned_cols=43 Identities=23% Similarity=0.887 Sum_probs=26.1
Q ss_pred ccccccccccccceecCCCCcccHhHHhhhcccCCCCCCcccccc
Q 000915 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1225)
Q Consensus 26 tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs 70 (1225)
.|--|. |.++..+..=.|+.|..|+...+.+...||+|..++.
T Consensus 4 nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCW--FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp ---SS---S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred cChhhh--hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 455555 3444566634699999999999999999999987653
No 138
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.11 E-value=5.8 Score=46.52 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=30.3
Q ss_pred CCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCCC
Q 000915 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEV 180 (1225)
Q Consensus 124 ~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~~ 180 (1225)
..|.||--. ...+ +.=..| -|.+.||..|++|.+.. .--+||-|....
T Consensus 230 ~~CaIClEd--Y~~G-dklRiL---PC~H~FH~~CIDpWL~~---~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLED--YEKG-DKLRIL---PCSHKFHVNCIDPWLTQ---TRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecc--cccC-CeeeEe---cCCCchhhccchhhHhh---cCccCCCCCCcC
Confidence 379999422 1111 111222 58889999999999732 122799998873
No 139
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=54.08 E-value=9.7 Score=50.10 Aligned_cols=42 Identities=31% Similarity=0.275 Sum_probs=30.9
Q ss_pred ccccccCCCCCCCccCCCCCCCCCchhhhHHHHHHHHHHHHhc
Q 000915 823 YPLLARLPADMKPVLAPSHHNKIPISVRQTQLYRLTEFFLRKA 865 (1225)
Q Consensus 823 ~pllaqlp~dmrp~l~~~~~~kvp~svrq~ql~rl~eh~l~k~ 865 (1225)
||.++-|=.|-.=.+++..||. |++|=++-+|.|-|+--.++
T Consensus 956 ~~s~~~l~l~p~~~~~~~~~~g-~~~~p~~dv~~l~eq~~~~~ 997 (1051)
T KOG0955|consen 956 YPSYPALILDPKMPREGNFHNG-PDPAPPTDVLALPEQRTNKA 997 (1051)
T ss_pred CccchhhhcccccccccCccCC-CCCCCCcccccchHHHhccc
Confidence 7777777777777777788888 88888888887776654443
No 140
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.79 E-value=5.1 Score=49.92 Aligned_cols=40 Identities=25% Similarity=0.531 Sum_probs=29.4
Q ss_pred ccccccccccccccc---cceecCCCCcccHhHHhhhcccCCCCC
Q 000915 22 FECGRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTITNLCP 63 (1225)
Q Consensus 22 sEd~tCpICLE~fsD---~~vL~pCgHtFC~~CIqqWlK~knSCP 63 (1225)
.+-..|+||+..|.. .++...|+|+.|..|++..- ..+||
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 445789999888632 24556799999999987632 45688
No 141
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=51.38 E-value=7.5 Score=45.38 Aligned_cols=38 Identities=34% Similarity=0.754 Sum_probs=32.9
Q ss_pred cccccCCCCccccccc--cCCCCCCCC-CCcccCCCCCCCC
Q 000915 143 TSIACDSCDLWYHAFC--VGFDPEGTC-EDTWLCPRCVAEV 180 (1225)
Q Consensus 143 ~LLlCDsCD~aYH~~C--LgPPLe~VP-eGDWfCP~C~~~~ 180 (1225)
.|+-|+.|..|||..| ++++....| ...|+|..|....
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQ 114 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccchhh
Confidence 7899999999999999 999976554 5689999998774
No 142
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=49.11 E-value=4.9 Score=46.08 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=37.2
Q ss_pred CCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCC---CCCCCcccCCCCCC
Q 000915 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPE---GTCEDTWLCPRCVA 178 (1225)
Q Consensus 124 ~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe---~VPeGDWfCP~C~~ 178 (1225)
..|.+|-.....-.-+..+-||.|..|...||-+|+..+.+ .+-...|-|-.|.-
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l 316 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL 316 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh
Confidence 45888832211111233457999999999999999998843 24456899888843
No 144
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=48.43 E-value=5.8 Score=49.86 Aligned_cols=47 Identities=26% Similarity=0.617 Sum_probs=35.7
Q ss_pred cccccccccccccccceecCCCCcccHhHHhhh---cccCCCCCCcccccc
Q 000915 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNW---STITNLCPLCQGEFQ 70 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~~vL~pCgHtFC~~CIqqW---lK~knSCPLCRaeFs 70 (1225)
-...|+||+..+..+ ....|.|.||..|+-.- ......||+|+....
T Consensus 20 k~lEc~ic~~~~~~p-~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEP-SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeecc-chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 456899999999885 56669999999997643 333667999986544
No 145
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=48.35 E-value=17 Score=45.85 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=33.7
Q ss_pred CCCCCCCCCCccccCCCcccccccCCCCcc-ccccccCCCCCCCCCCcccCCCCCCC
Q 000915 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLW-YHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 124 ~~CkVCgGs~~~~DdddeD~LLlCDsCD~a-YH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
..|..|+.. +.+...+|..|+.. -|..|-.+... +|.+.-||+.|-..
T Consensus 2 ~~Cp~Cg~~-------n~~~akFC~~CG~~l~~~~Cp~CG~~-~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFE-------NPNNNRFCQKCGTSLTHKPCPQCGTE-VPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCc-------CCCCCccccccCCCCCCCcCCCCCCC-CCcccccccccCCc
Confidence 368888533 33346789999776 34678777753 67788899999766
No 146
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=48.28 E-value=4.3 Score=33.93 Aligned_cols=41 Identities=24% Similarity=0.578 Sum_probs=29.2
Q ss_pred ccccccccccc--cceecCCCCcccHhHHhhhcc------cCCCCCCcc
Q 000915 26 RCGICMDVVID--RGVLDCCQHWFCFACIDNWST------ITNLCPLCQ 66 (1225)
Q Consensus 26 tCpICLE~fsD--~~vL~pCgHtFC~~CIqqWlK------~knSCPLCR 66 (1225)
.|.||...... ......|..+||..|+..-.. ..+.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 48899884332 256678999999999875432 267798885
No 147
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.05 E-value=14 Score=44.04 Aligned_cols=29 Identities=34% Similarity=0.610 Sum_probs=21.8
Q ss_pred ceecCCCCcccHhHHhhhcccCCCCCCccc
Q 000915 38 GVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (1225)
Q Consensus 38 ~vL~pCgHtFC~~CIqqWlK~knSCPLCRa 67 (1225)
.+.-.|+|.||+.|...|.... .|+.+..
T Consensus 179 ~v~C~~g~~FC~~C~~~~H~p~-~C~~~~~ 207 (444)
T KOG1815|consen 179 EVDCGCGHEFCFACGEESHSPV-SCPGAKK 207 (444)
T ss_pred ceeCCCCchhHhhccccccCCC-cccchHH
Confidence 3455699999999999997654 6776643
No 148
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.95 E-value=6.5 Score=45.43 Aligned_cols=56 Identities=25% Similarity=0.559 Sum_probs=45.8
Q ss_pred cccccCccccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 16 ENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 16 edDssssEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
+++++-.....|-||...+.-+.....|.|.||+.|...|....+-||-|+.....
T Consensus 97 ~dA~~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 97 EDAGFQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred hhccccCCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 34555566678999999987666777899999999999999989999999876553
No 149
>PLN02400 cellulose synthase
Probab=44.82 E-value=15 Score=48.45 Aligned_cols=54 Identities=24% Similarity=0.564 Sum_probs=41.0
Q ss_pred cCCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 121 LDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 121 ~D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
..+..|+|||... +-+.+.+..+.|+.|.-..+..|...- .-+|.=.||+|...
T Consensus 34 ~~gqiCqICGD~V--G~t~dGe~FVAC~eCaFPVCRpCYEYE---RkeGnq~CPQCkTr 87 (1085)
T PLN02400 34 LNGQICQICGDDV--GVTETGDVFVACNECAFPVCRPCYEYE---RKDGTQCCPQCKTR 87 (1085)
T ss_pred cCCceeeeccccc--CcCCCCCEEEEEccCCCccccchhhee---cccCCccCcccCCc
Confidence 3567899996443 334556688999999988888888554 55678899999887
No 150
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.61 E-value=13 Score=42.88 Aligned_cols=29 Identities=24% Similarity=0.772 Sum_probs=21.8
Q ss_pred CCCcccHhHHhhhc-------------ccCCCCCCccccccc
Q 000915 43 CQHWFCFACIDNWS-------------TITNLCPLCQGEFQL 71 (1225)
Q Consensus 43 CgHtFC~~CIqqWl-------------K~knSCPLCRaeFs~ 71 (1225)
|.-..|..|+-+|. +.+-.||.||+.|..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 44457789998874 346789999998875
No 151
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.50 E-value=12 Score=47.45 Aligned_cols=39 Identities=26% Similarity=0.616 Sum_probs=29.5
Q ss_pred cccccccccccc-ceecCCCCcccHhHHhhhcccCCCCCC
Q 000915 26 RCGICMDVVIDR-GVLDCCQHWFCFACIDNWSTITNLCPL 64 (1225)
Q Consensus 26 tCpICLE~fsD~-~vL~pCgHtFC~~CIqqWlK~knSCPL 64 (1225)
.|.||.=.++.- .++..|+|..|-.|...|..+...||.
T Consensus 1030 ~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeEeeEeeccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 355555444332 356789999999999999999899997
No 152
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=44.42 E-value=9.2 Score=37.07 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=23.7
Q ss_pred cCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 147 CDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 147 CDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
-..|...||+.|+.--+... ...-.||.|+..
T Consensus 49 ~g~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 49 WGKCSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred eccCccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 34599999999998776432 234589999876
No 153
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.56 E-value=11 Score=44.66 Aligned_cols=48 Identities=25% Similarity=0.610 Sum_probs=31.3
Q ss_pred ccccccccc-ccccc--cceecCCCCcccHhHHhhhccc------CCCCCC--cccccc
Q 000915 23 ECGRCGICM-DVVID--RGVLDCCQHWFCFACIDNWSTI------TNLCPL--CQGEFQ 70 (1225)
Q Consensus 23 Ed~tCpICL-E~fsD--~~vL~pCgHtFC~~CIqqWlK~------knSCPL--CRaeFs 70 (1225)
....|.||+ +.... ......|+|.||..|..+..+. ...||. |...+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 467899999 44321 1235679999999999876542 455765 444433
No 154
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=43.40 E-value=13 Score=44.23 Aligned_cols=39 Identities=28% Similarity=0.667 Sum_probs=33.0
Q ss_pred cccccccCCCCccccccccCCCCCCCCCCcccCCCCCCCC
Q 000915 141 LDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEV 180 (1225)
Q Consensus 141 eD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~~ 180 (1225)
...|+-|+.|..|=|.+|++..-... ...+.|..|....
T Consensus 98 ~g~~i~c~~c~~Wqh~~C~g~~~~~~-p~~y~c~~c~~~~ 136 (508)
T KOG1844|consen 98 EGLMIQCDWCGRWQHKICCGSFKSTK-PDKYVCEICTPRN 136 (508)
T ss_pred CceeeCCcccCcccCceeeeecCCCC-chhceeeeecccc
Confidence 56899999999999999999986444 4678899998873
No 155
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=43.04 E-value=15 Score=33.79 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=20.5
Q ss_pred CCCCCCCCCCccccCCCcccccccC--CCCccccccccCCCCC-------CCCCCcccCCCCCCC
Q 000915 124 DGCKIRSGSMVAEESSNLDTSIACD--SCDLWYHAFCVGFDPE-------GTCEDTWLCPRCVAE 179 (1225)
Q Consensus 124 ~~CkVCgGs~~~~DdddeD~LLlCD--sCD~aYH~~CLgPPLe-------~VPeGDWfCP~C~~~ 179 (1225)
..|.||... ..+++....+.|+ .|...||..||.--+. ....-.+.||.|...
T Consensus 3 ~~C~IC~~~---~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSY---RLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--S---S-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcE---ecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 368999543 1112333468898 9999999999975421 111234569999876
No 156
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=42.94 E-value=23 Score=38.40 Aligned_cols=52 Identities=25% Similarity=0.622 Sum_probs=34.1
Q ss_pred cccc-CCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 118 VICL-DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 118 viC~-D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
..|. .+-.|++|......-.- +.+....|..|..-||..|..-. .||.|...
T Consensus 146 ~lC~~kGfiCe~C~~~~~IfPF-~~~~~~~C~~C~~v~H~~C~~~~---------~CpkC~R~ 198 (202)
T PF13901_consen 146 ELCQQKGFICEICNSDDIIFPF-QIDTTVRCPKCKSVFHKSCFRKK---------SCPKCARR 198 (202)
T ss_pred HHHHhCCCCCccCCCCCCCCCC-CCCCeeeCCcCccccchhhcCCC---------CCCCcHhH
Confidence 3454 46789999533111111 12357889999999999999952 29999654
No 157
>PLN02436 cellulose synthase A
Probab=42.76 E-value=17 Score=48.04 Aligned_cols=54 Identities=24% Similarity=0.590 Sum_probs=40.4
Q ss_pred cCCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 121 LDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 121 ~D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
..+..|+|||... +-+.+.+..+.|..|.-..+..|...- .-+|.=.||+|...
T Consensus 34 ~~~~iCqICGD~V--g~t~dGe~FVACn~C~fpvCr~Cyeye---r~eg~~~Cpqckt~ 87 (1094)
T PLN02436 34 LSGQTCQICGDEI--ELTVDGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKTR 87 (1094)
T ss_pred cCCcccccccccc--CcCCCCCEEEeeccCCCccccchhhhh---hhcCCccCcccCCc
Confidence 3556899996432 334455678999999988888888544 55677889999887
No 158
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.60 E-value=15 Score=43.84 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=36.6
Q ss_pred ccccccccccccc--ccceecCCCCcccHhHHhhhccc---CCCCCCccccc
Q 000915 23 ECGRCGICMDVVI--DRGVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEF 69 (1225)
Q Consensus 23 Ed~tCpICLE~fs--D~~vL~pCgHtFC~~CIqqWlK~---knSCPLCRaeF 69 (1225)
.-+.|||=.+.-. +|+.-..|||+.|..-|.+..++ ...||.|...-
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 3578999887753 46777789999999999987765 46899996653
No 159
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=42.32 E-value=15 Score=48.45 Aligned_cols=53 Identities=21% Similarity=0.554 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 122 D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
.+..|+|||... +-+.+.+..+.|..|.-..+..|...- .-+|.=.||+|...
T Consensus 16 ~~qiCqICGD~v--g~~~~Ge~FVAC~eC~FPVCrpCYEYE---r~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNV--GKTVDGEPFVACDVCAFPVCRPCYEYE---RKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeeccccc--CcCCCCCEEEEeccCCCccccchhhhh---hhcCCccCCccCCc
Confidence 456899996443 334556688999999998888888544 55678899999887
No 160
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.55 E-value=16 Score=41.66 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=25.7
Q ss_pred cccccccccc-cc-c--ccceecCCCCcccHhHHhhhcc
Q 000915 23 ECGRCGICMD-VV-I--DRGVLDCCQHWFCFACIDNWST 57 (1225)
Q Consensus 23 Ed~tCpICLE-~f-s--D~~vL~pCgHtFC~~CIqqWlK 57 (1225)
....|++|+. .+ . ....+.+|+|.||..|..-|..
T Consensus 94 ~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 94 REETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred cccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 3567899987 22 1 1246778999999999988864
No 161
>PLN02189 cellulose synthase
Probab=40.51 E-value=19 Score=47.35 Aligned_cols=53 Identities=23% Similarity=0.472 Sum_probs=38.3
Q ss_pred Cccccccccccccccc----c--ceecCCCCcccHhHHhh-hcccCCCCCCcccccccee
Q 000915 21 NFECGRCGICMDVVID----R--GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 21 ssEd~tCpICLE~fsD----~--~vL~pCgHtFC~~CIqq-WlK~knSCPLCRaeFs~I~ 73 (1225)
......|.||-+.+.. . ..+.-|+.-.|..|.+- ..+....||.|+..|....
T Consensus 31 ~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 3455699999998641 1 34556888899999853 2345788999999988543
No 162
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=39.51 E-value=6.8 Score=37.55 Aligned_cols=53 Identities=23% Similarity=0.545 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 122 D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
.+..|+|||-. -+-+.+.+..+.|..|.-.....|...- .-+|.-.||+|...
T Consensus 8 ~~qiCqiCGD~--VGl~~~Ge~FVAC~eC~fPvCr~CyEYE---rkeg~q~CpqCkt~ 60 (80)
T PF14569_consen 8 NGQICQICGDD--VGLTENGEVFVACHECAFPVCRPCYEYE---RKEGNQVCPQCKTR 60 (80)
T ss_dssp SS-B-SSS--B----B-SSSSB--S-SSS-----HHHHHHH---HHTS-SB-TTT--B
T ss_pred CCcccccccCc--cccCCCCCEEEEEcccCCccchhHHHHH---hhcCcccccccCCC
Confidence 45689999633 2444566789999999877777776654 33566789999866
No 163
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=38.88 E-value=12 Score=47.39 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=30.8
Q ss_pred ccccccccccc----ccccceecCCCCcccHhHH--hhhcccCCCCCCcccc
Q 000915 23 ECGRCGICMDV----VIDRGVLDCCQHWFCFACI--DNWSTITNLCPLCQGE 68 (1225)
Q Consensus 23 Ed~tCpICLE~----fsD~~vL~pCgHtFC~~CI--qqWlK~knSCPLCRae 68 (1225)
++..|-+|... -....+++.|.-..|..|. ..-....+.|-.|-..
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhcccc
Confidence 77899999977 4555788888877777773 2222345556666544
No 164
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=38.65 E-value=27 Score=46.24 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=38.9
Q ss_pred cCcccccccccccccccc------ceecCCCCcccHhHHhh-hcccCCCCCCcccccccee
Q 000915 20 LNFECGRCGICMDVVIDR------GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 20 sssEd~tCpICLE~fsD~------~vL~pCgHtFC~~CIqq-WlK~knSCPLCRaeFs~I~ 73 (1225)
.....-.|.||-+.+... ..+..|+.--|..|.+= ..+....||.|+..|....
T Consensus 13 ~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 13 KHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred cccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 344556999999986321 34567888899999842 3445788999999988543
No 165
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=17 Score=43.11 Aligned_cols=43 Identities=26% Similarity=0.613 Sum_probs=30.3
Q ss_pred ccccccccccccccc-----cceecCCCCcccHhHHhhhcccCCCCCCc
Q 000915 22 FECGRCGICMDVVID-----RGVLDCCQHWFCFACIDNWSTITNLCPLC 65 (1225)
Q Consensus 22 sEd~tCpICLE~fsD-----~~vL~pCgHtFC~~CIqqWlK~knSCPLC 65 (1225)
..-..|++|.-.+.. ...+. |+|.||+.|.-.|......|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 334679999877531 13455 99999999998997766656554
No 166
>PHA02929 N1R/p28-like protein; Provisional
Probab=36.62 E-value=17 Score=40.88 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 122 D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
....|.||........ ........=..|++.||..|+..-+... -.||.|+..
T Consensus 173 ~~~eC~ICle~~~~~~-~~~~~~~vl~~C~H~FC~~CI~~Wl~~~----~tCPlCR~~ 225 (238)
T PHA02929 173 KDKECAICMEKVYDKE-IKNMYFGILSNCNHVFCIECIDIWKKEK----NTCPVCRTP 225 (238)
T ss_pred CCCCCccCCcccccCc-cccccceecCCCCCcccHHHHHHHHhcC----CCCCCCCCE
Confidence 3567999953211000 0001112224788999999998765432 259999987
No 167
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.94 E-value=17 Score=43.36 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=29.5
Q ss_pred ccccccccccccccccceecCCCCcccHhHHhhhccc
Q 000915 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI 58 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~ 58 (1225)
.....|.||.+.+........|+|.||..|...+..+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 3457899999998654566679999999999887643
No 168
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=35.76 E-value=27 Score=33.67 Aligned_cols=51 Identities=22% Similarity=0.430 Sum_probs=20.5
Q ss_pred ccccccccccccccc----c--ceecCCCCcccHhHHhh-hcccCCCCCCccccccce
Q 000915 22 FECGRCGICMDVVID----R--GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLI 72 (1225)
Q Consensus 22 sEd~tCpICLE~fsD----~--~vL~pCgHtFC~~CIqq-WlK~knSCPLCRaeFs~I 72 (1225)
...-.|.||-+.+.- . ..+..|+.-.|..|..- ..+....||.|+..|...
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 445689999988631 1 23456888899999764 334578899999888753
No 169
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.62 E-value=8.4 Score=44.05 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=36.7
Q ss_pred cCCCCCCCCCCCCccccCCCcccc--cccCCCCccccccccCCCCCCCCCCcccCCCCCCCC
Q 000915 121 LDGDGCKIRSGSMVAEESSNLDTS--IACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEV 180 (1225)
Q Consensus 121 ~D~~~CkVCgGs~~~~DdddeD~L--LlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~~ 180 (1225)
.++..|.|||+......+ .++.+ .+==+|+..||-+|+.--- +-...-+||.|.+..
T Consensus 222 l~d~vCaVCg~~~~~s~~-eegvienty~LsCnHvFHEfCIrGWc--ivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVD-EEGVIENTYKLSCNHVFHEFCIRGWC--IVGKKQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeecc-hhhhhhhheeeecccchHHHhhhhhe--eecCCCCCchHHHHh
Confidence 466789999877544321 22211 2223799999999998653 222345799998874
No 170
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.55 E-value=4.2 Score=48.18 Aligned_cols=51 Identities=18% Similarity=0.394 Sum_probs=40.9
Q ss_pred cccccccccccccc---cceecCCCCcccHhHHhhhcccCCCCCCcccccccee
Q 000915 23 ECGRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 23 Ed~tCpICLE~fsD---~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I~ 73 (1225)
-...|+||...+.. .+.-..|+|.++..||.+|+.....||.|+.++..+.
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 34679999988743 3444569999999999999988899999998876543
No 171
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=34.97 E-value=34 Score=30.52 Aligned_cols=40 Identities=25% Similarity=0.481 Sum_probs=21.1
Q ss_pred ccccccccccc---------ceecCCCCcccHhHHhhhcccCCCCCCcc
Q 000915 27 CGICMDVVIDR---------GVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (1225)
Q Consensus 27 CpICLE~fsD~---------~vL~pCgHtFC~~CIqqWlK~knSCPLCR 66 (1225)
|.-|+..|... -..+.|.+.||.+|=-=-.+.--.||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 55677666542 35678999999999332234556799884
No 172
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=34.65 E-value=25 Score=46.44 Aligned_cols=53 Identities=19% Similarity=0.518 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 122 D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
....|+|||... +-+.+.+..+.|..|.-..+..|...- .-+|.-.||+|...
T Consensus 14 ~~~~c~iCGd~v--g~~~~Ge~FVAC~eC~fpvCr~cyeye---~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 14 DAKTCRVCGDEV--GVKEDGQPFVACHVCGFPVCKPCYEYE---RSEGNQCCPQCNTR 66 (1044)
T ss_pred Ccchhhcccccc--CcCCCCCEEEEeccCCCccccchhhhh---hhcCCccCCccCCc
Confidence 456899997443 334556688999999988888888554 55677889999877
No 173
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=34.34 E-value=19 Score=41.97 Aligned_cols=34 Identities=29% Similarity=0.718 Sum_probs=24.5
Q ss_pred cccccCCCCcc----------ccccccCCCCCCCCCCcccCCCCCCC
Q 000915 143 TSIACDSCDLW----------YHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 143 ~LLlCDsCD~a----------YH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
..-+||.||.. -|.|||.+.. -+.+-.||.|...
T Consensus 89 ~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr---~~~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAIYGRMIPCKHVFCLECAR---SDSDKICPLCDDR 132 (389)
T ss_pred ceEeecccCCcceeeecccccchhhhhhhhh---cCccccCcCcccH
Confidence 46778888754 4888888873 2236689999887
No 174
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.32 E-value=11 Score=42.31 Aligned_cols=46 Identities=24% Similarity=0.527 Sum_probs=22.4
Q ss_pred ccccccccccccccceec-----CCCCcccHhHHhhhcccCCCCCCcccccc
Q 000915 24 CGRCGICMDVVIDRGVLD-----CCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~-----pCgHtFC~~CIqqWlK~knSCPLCRaeFs 70 (1225)
...||||-..-.- .++. .=.|.+|..|-..|.-....||.|...-.
T Consensus 172 ~g~CPvCGs~P~~-s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~ 222 (290)
T PF04216_consen 172 RGYCPVCGSPPVL-SVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDH 222 (290)
T ss_dssp -SS-TTT---EEE-EEEE------EEEEEETTT--EEE--TTS-TTT---SS
T ss_pred CCcCCCCCCcCce-EEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCC
Confidence 4699999876321 1111 12566999999999998999999977533
No 175
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.19 E-value=27 Score=35.50 Aligned_cols=42 Identities=24% Similarity=0.403 Sum_probs=32.5
Q ss_pred ccccccccccccc-------------ceecCCCCcccHhHHhhhcccCCCCCCcc
Q 000915 25 GRCGICMDVVIDR-------------GVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (1225)
Q Consensus 25 ~tCpICLE~fsD~-------------~vL~pCgHtFC~~CIqqWlK~knSCPLCR 66 (1225)
..|.-|+..|... -....|.+.||.+|=-=+.+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4699999987543 23678999999999666666777899995
No 176
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=33.87 E-value=20 Score=39.57 Aligned_cols=49 Identities=18% Similarity=0.523 Sum_probs=35.6
Q ss_pred cccccccccccccc---ceecCCC-----CcccHhHHhhhcc--cCCCCCCccccccce
Q 000915 24 CGRCGICMDVVIDR---GVLDCCQ-----HWFCFACIDNWST--ITNLCPLCQGEFQLI 72 (1225)
Q Consensus 24 d~tCpICLE~fsD~---~vL~pCg-----HtFC~~CIqqWlK--~knSCPLCRaeFs~I 72 (1225)
+..|-||....... ....+|. +..|..|+..|.. ....|.+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 47899999865321 2344453 3389999999986 577899999887754
No 177
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=33.80 E-value=29 Score=40.72 Aligned_cols=49 Identities=22% Similarity=0.452 Sum_probs=38.2
Q ss_pred ccccccccccccc--c-cceecCCCCcccHhHHhhhcccCCCCCCccccccc
Q 000915 23 ECGRCGICMDVVI--D-RGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1225)
Q Consensus 23 Ed~tCpICLE~fs--D-~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~ 71 (1225)
-...|+||.+... + ...+-+|++..|+.|...-......||.||..+..
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred cCCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 3468999999762 2 24555899999999988877888999999976553
No 178
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=33.39 E-value=11 Score=31.90 Aligned_cols=41 Identities=20% Similarity=0.500 Sum_probs=20.1
Q ss_pred CCCCCCCCccccCCCcccccccC--CCCccccccccCCCCCCCCCCcccCCCC
Q 000915 126 CKIRSGSMVAEESSNLDTSIACD--SCDLWYHAFCVGFDPEGTCEDTWLCPRC 176 (1225)
Q Consensus 126 CkVCgGs~~~~DdddeD~LLlCD--sCD~aYH~~CLgPPLe~VPeGDWfCP~C 176 (1225)
|.+|......+ +.|. +|...+|.+|+.--....... .||.|
T Consensus 1 C~~C~~iv~~G--------~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG--------QRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-SSS--------EE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHeee--------ccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 56675443333 6687 699999999998765433322 68887
No 179
>PLN02400 cellulose synthase
Probab=33.36 E-value=26 Score=46.44 Aligned_cols=53 Identities=25% Similarity=0.446 Sum_probs=38.1
Q ss_pred Ccccccccccccccccc------ceecCCCCcccHhHHhh-hcccCCCCCCcccccccee
Q 000915 21 NFECGRCGICMDVVIDR------GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 21 ssEd~tCpICLE~fsD~------~vL~pCgHtFC~~CIqq-WlK~knSCPLCRaeFs~I~ 73 (1225)
....-.|.||-+.+.-. ..+..|+.--|..|.+= ..+....||.|+..|....
T Consensus 33 ~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 33 NLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred ccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc
Confidence 34455999999986311 34567888899999842 2345778999999988643
No 180
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=32.55 E-value=20 Score=34.98 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=15.2
Q ss_pred hhhhhccccccccCCCCCCccc
Q 000915 674 LSRLYLADTSVFPRKDNIMPLS 695 (1225)
Q Consensus 674 lsrlylad~sv~prk~~ikpl~ 695 (1225)
..-||+||+||||.--..-|-.
T Consensus 114 ~~nL~V~DaSv~P~~~~~np~~ 135 (144)
T PF05199_consen 114 VRNLRVADASVFPTSPGANPTL 135 (144)
T ss_dssp SBSEEE-SGGGSSS-SSSSSHH
T ss_pred eeeEEECCCCcCCCCCCcCcHH
Confidence 3569999999999876665543
No 181
>PLN02436 cellulose synthase A
Probab=32.40 E-value=28 Score=46.15 Aligned_cols=53 Identities=21% Similarity=0.458 Sum_probs=38.0
Q ss_pred Cccccccccccccccc----c--ceecCCCCcccHhHHhhh-cccCCCCCCcccccccee
Q 000915 21 NFECGRCGICMDVVID----R--GVLDCCQHWFCFACIDNW-STITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 21 ssEd~tCpICLE~fsD----~--~vL~pCgHtFC~~CIqqW-lK~knSCPLCRaeFs~I~ 73 (1225)
....-.|.||-+.+.. . .-+.-|+.-.|..|.+-= .+....||.|+..|....
T Consensus 33 ~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 33 ELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred ccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 3445599999998631 1 345568888999998532 344788999999988543
No 182
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.21 E-value=24 Score=40.15 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=26.3
Q ss_pred cccccccccccccceecCCCCcccHhHHhhhc
Q 000915 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWS 56 (1225)
Q Consensus 25 ~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWl 56 (1225)
+.|+.||.++.+ +++.+=||.||..||.++.
T Consensus 44 dcCsLtLqPc~d-Pvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 44 DCCSLTLQPCRD-PVITPDGYLFDREAILEYI 74 (303)
T ss_pred ceeeeecccccC-CccCCCCeeeeHHHHHHHH
Confidence 578999999998 5666679999999998764
No 183
>PLN02189 cellulose synthase
Probab=32.18 E-value=30 Score=45.69 Aligned_cols=53 Identities=26% Similarity=0.567 Sum_probs=39.5
Q ss_pred CCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 122 D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
.+..|+|||... +-+.+.+..+.|..|.-..+..|...- .-+|.=.||+|...
T Consensus 33 ~~~~C~iCgd~v--g~~~~g~~fvaC~~C~fpvCr~Cyeye---r~eg~q~CpqCkt~ 85 (1040)
T PLN02189 33 DGQVCEICGDEI--GLTVDGDLFVACNECGFPVCRPCYEYE---RREGTQNCPQCKTR 85 (1040)
T ss_pred cCcccccccccc--CcCCCCCEEEeeccCCCccccchhhhh---hhcCCccCcccCCc
Confidence 456899996443 223455678999999988888888544 55677889999887
No 184
>PLN02195 cellulose synthase A
Probab=31.84 E-value=30 Score=45.45 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 122 D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
....|.+||... +-+.+.+..+.|..|.-..+..|...- .-+|.=-||+|...
T Consensus 5 ~~~~c~~cgd~~--~~~~~g~~fvaC~eC~~pvCrpCyeye---r~eg~q~CpqCkt~ 57 (977)
T PLN02195 5 GAPICATCGEEV--GVDSNGEAFVACHECSYPLCKACLEYE---IKEGRKVCLRCGGP 57 (977)
T ss_pred CCccceeccccc--CcCCCCCeEEEeccCCCccccchhhhh---hhcCCccCCccCCc
Confidence 345799997554 333455678999999999888888554 55678899999876
No 185
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=31.79 E-value=39 Score=29.08 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=22.8
Q ss_pred CCCCchhhhHHHHHHHHHHHHhcChhhh
Q 000915 843 NKIPISVRQTQLYRLTEFFLRKANLPVI 870 (1225)
Q Consensus 843 ~kvp~svrq~ql~rl~eh~l~k~nl~~i 870 (1225)
++||.-|| .+|-+-+|.|-|..|+..|
T Consensus 10 ~~iP~fvR-~~~r~~~E~~Ar~~G~~~I 36 (45)
T PF08369_consen 10 DRIPFFVR-KKLRDAAEKYARERGYDEI 36 (45)
T ss_dssp CTS-HHHH-HHHHHHHHHHHHHCT-SEE
T ss_pred HHCCHHHH-HHHHHHHHHHHHHcCCCeE
Confidence 57899999 9999999999999998776
No 186
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=31.42 E-value=32 Score=44.05 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=39.8
Q ss_pred Ccccccccccccccccc-ceecCCCCcccHhHHhhhcccCCCCCC--ccccccc
Q 000915 21 NFECGRCGICMDVVIDR-GVLDCCQHWFCFACIDNWSTITNLCPL--CQGEFQL 71 (1225)
Q Consensus 21 ssEd~tCpICLE~fsD~-~vL~pCgHtFC~~CIqqWlK~knSCPL--CRaeFs~ 71 (1225)
+.....|.+|-.++... ..+..|+|.-|..|+..|.....-||. |.....+
T Consensus 776 s~a~~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c~~ 829 (839)
T KOG0269|consen 776 SRASAKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLCHY 829 (839)
T ss_pred HHhhcCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCccccc
Confidence 34455899999887542 467889999999999999988888888 7665443
No 187
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.41 E-value=20 Score=37.64 Aligned_cols=46 Identities=33% Similarity=0.740 Sum_probs=27.3
Q ss_pred ccccccccccccccceecCCCCc-------ccHhHHhhhc----ccCCCCCCcccccccee
Q 000915 24 CGRCGICMDVVIDRGVLDCCQHW-------FCFACIDNWS----TITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~pCgHt-------FC~~CIqqWl----K~knSCPLCRaeFs~I~ 73 (1225)
+.+|.||+.. .+.+.|||. ||..|--.-. +..+.|-+|+.....+.
T Consensus 65 datC~IC~KT----KFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ 121 (169)
T KOG3799|consen 65 DATCGICHKT----KFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILT 121 (169)
T ss_pred Ccchhhhhhc----ccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHH
Confidence 3589999965 244456664 5555533221 22556999988765433
No 188
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=29.90 E-value=17 Score=45.23 Aligned_cols=40 Identities=20% Similarity=0.451 Sum_probs=25.9
Q ss_pred ccccccccccc-----cc-c-cceecCCCCcccHhHHhhhcccCCCCCCc
Q 000915 23 ECGRCGICMDV-----VI-D-RGVLDCCQHWFCFACIDNWSTITNLCPLC 65 (1225)
Q Consensus 23 Ed~tCpICLE~-----fs-D-~~vL~pCgHtFC~~CIqqWlK~knSCPLC 65 (1225)
....|.||... |. + ...+..|+++||..|. .....-||.|
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~---~r~s~~CPrC 556 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCL---RRKSPCCPRC 556 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHH---hccCCCCCch
Confidence 34678888533 10 1 1346679999999994 4344559999
No 189
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=29.58 E-value=14 Score=42.64 Aligned_cols=42 Identities=24% Similarity=0.614 Sum_probs=30.5
Q ss_pred CCCCCCCCCCccccCCCcccccccC-CCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 124 DGCKIRSGSMVAEESSNLDTSIACD-SCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 124 ~~CkVCgGs~~~~DdddeD~LLlCD-sCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
..|.||. ..+-+-|. .|+..|...|+.--+.. .-|||-|+..
T Consensus 26 lrC~IC~----------~~i~ip~~TtCgHtFCslCIR~hL~~----qp~CP~Cr~~ 68 (391)
T COG5432 26 LRCRICD----------CRISIPCETTCGHTFCSLCIRRHLGT----QPFCPVCRED 68 (391)
T ss_pred HHhhhhh----------heeecceecccccchhHHHHHHHhcC----CCCCcccccc
Confidence 4688993 12445565 79999999998877643 3489999987
No 190
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=29.30 E-value=14 Score=34.77 Aligned_cols=43 Identities=23% Similarity=0.675 Sum_probs=25.2
Q ss_pred cccccccccccccceecCCCCcccHhHHhhhcccCCCCCCcccccccee
Q 000915 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 25 ~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I~ 73 (1225)
..||.|...+.... +|++|..|-..+. ....||-|.+++..+.
T Consensus 2 ~~CP~C~~~L~~~~-----~~~~C~~C~~~~~-~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----GHYHCEACQKDYK-KEAFCPDCGQPLEVLK 44 (70)
T ss_dssp -B-SSS-SBEEEET-----TEEEETTT--EEE-EEEE-TTT-SB-EEEE
T ss_pred CcCCCCCCccEEeC-----CEEECccccccce-ecccCCCcccHHHHHH
Confidence 57999998865322 7889999976543 3577999999877644
No 191
>PF14805 THDPS_N_2: Tetrahydrodipicolinate N-succinyltransferase N-terminal; PDB: 3EG4_A 3TDT_A 2TDT_A 1KGT_A 1TDT_A 1KGQ_A 3BXY_A 3GOS_A 3TK8_A.
Probab=29.26 E-value=89 Score=29.43 Aligned_cols=44 Identities=32% Similarity=0.446 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCccccccccCCHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHhhhccccc
Q 000915 537 QELRKEIREAVRNRSSKDCDENLFDPKLLAAFRAAIAGPKCEPVKQPAHLAVKVKKSMLEKGKVRE 602 (1225)
Q Consensus 537 q~lr~eireav~~~~~~~~~~~~fd~kll~afraai~~~~~~~~~~~~~~~~k~kk~~lqkgk~re 602 (1225)
+.|++.|-+|-.++... ....-++.+..|++.+|. +|++|++|=
T Consensus 1 ~~l~~~Ie~aw~~r~~l--~~~~~~~~~~~av~~~i~--------------------~Ld~G~lRv 44 (70)
T PF14805_consen 1 SQLQKIIEAAWENRDEL--TPSNADPELRDAVEEVIE--------------------LLDSGELRV 44 (70)
T ss_dssp HHHHHHHHHHHHGGGG---BTTT--HHHHHHHHHHHH--------------------HHHTTSS-S
T ss_pred ChHHHHHHHHHHhHhhC--CCccCCHHHHHHHHHHHH--------------------HhcCCCeEE
Confidence 46888898888775433 233447788888888876 899999994
No 192
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=28.69 E-value=13 Score=34.81 Aligned_cols=21 Identities=29% Similarity=0.751 Sum_probs=19.5
Q ss_pred cccccCCCCccccccccCCCC
Q 000915 143 TSIACDSCDLWYHAFCVGFDP 163 (1225)
Q Consensus 143 ~LLlCDsCD~aYH~~CLgPPL 163 (1225)
-|+.|.+|+...|-.|++|.-
T Consensus 42 AMi~Cq~CGAFCHDDCIgpsk 62 (69)
T PF13922_consen 42 AMIMCQGCGAFCHDDCIGPSK 62 (69)
T ss_pred HHHHHhhccchhccccccHHH
Confidence 599999999999999999983
No 193
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=28.56 E-value=11 Score=43.94 Aligned_cols=52 Identities=27% Similarity=0.581 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCC-----CCcccCCCCCCC
Q 000915 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTC-----EDTWLCPRCVAE 179 (1225)
Q Consensus 123 ~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VP-----eGDWfCP~C~~~ 179 (1225)
...|..||.. +.+..++++|+-|..|||..|+.+...... ...++|+.|...
T Consensus 239 ~~~~~~cg~~-----~~~~~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~~ 295 (345)
T KOG1632|consen 239 KLICDPCGLS-----DANKKFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTVL 295 (345)
T ss_pred cccccccCcc-----hHHHHHHHHHHHHHHHhcccccccccchhhhhhhhccceecCceeec
Confidence 3457778532 122368999999999999999998742211 234899999874
No 194
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.52 E-value=40 Score=38.60 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=37.0
Q ss_pred cccccccccccccccc---ceecCCCCcccHhHHhhhcccCCCCCCccccccce
Q 000915 22 FECGRCGICMDVVIDR---GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72 (1225)
Q Consensus 22 sEd~tCpICLE~fsD~---~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeFs~I 72 (1225)
...+.|+|=--.+..+ +.+.+|||.|-..-+.+.- ...|++|.+.|..-
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQED 160 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCccccc
Confidence 4567898876555433 6788999999998877643 67899999988753
No 195
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=28.14 E-value=50 Score=43.89 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=37.9
Q ss_pred Ccccccccccccccccc------ceecCCCCcccHhHHhh-hcccCCCCCCccccccce
Q 000915 21 NFECGRCGICMDVVIDR------GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLI 72 (1225)
Q Consensus 21 ssEd~tCpICLE~fsD~------~vL~pCgHtFC~~CIqq-WlK~knSCPLCRaeFs~I 72 (1225)
+.....|.||-+.+..- ..+..|+.-.|..|.+- ..+....||.|+..|...
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~ 70 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRH 70 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhh
Confidence 44567899999986311 34567888899999843 234577899999998853
No 196
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=27.06 E-value=37 Score=33.38 Aligned_cols=36 Identities=22% Similarity=0.691 Sum_probs=28.1
Q ss_pred ccccccccccccccceecCCCCcccHhHHhhhcccCCCCCCccccc
Q 000915 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEF 69 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL~pCgHtFC~~CIqqWlK~knSCPLCRaeF 69 (1225)
...|-||...++.+ +|.||..| +.....|.+|...+
T Consensus 44 ~~~C~~CK~~v~q~------g~~YCq~C----AYkkGiCamCGKki 79 (90)
T PF10235_consen 44 SSKCKICKTKVHQP------GAKYCQTC----AYKKGICAMCGKKI 79 (90)
T ss_pred CccccccccccccC------CCccChhh----hcccCcccccCCee
Confidence 34899999887652 77899999 44577899998765
No 197
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=26.73 E-value=27 Score=42.55 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=35.5
Q ss_pred ccccccccccccc----cccceecCCCCcccHhHHhhhcc--------cCCCCCCcccccccee
Q 000915 22 FECGRCGICMDVV----IDRGVLDCCQHWFCFACIDNWST--------ITNLCPLCQGEFQLIT 73 (1225)
Q Consensus 22 sEd~tCpICLE~f----sD~~vL~pCgHtFC~~CIqqWlK--------~knSCPLCRaeFs~I~ 73 (1225)
.-...|.+|+... .....+..|+.+||..|-+...+ ..+.|-.|...-.++.
T Consensus 166 ~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 166 KVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred cccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhcc
Confidence 3345599999664 23357788999999999766542 2567888876555433
No 198
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.48 E-value=51 Score=38.45 Aligned_cols=45 Identities=16% Similarity=0.351 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCccc----cCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 123 GDGCKIRSGSMVAE----ESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 123 ~~~CkVCgGs~~~~----DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
...|.|||+.+.-. ...+....+.|.-|...||..= --|+.|-..
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R------------~~C~~Cg~~ 235 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVR------------VKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccC------------ccCCCCCCC
Confidence 46899998764211 1223347899999999888431 138888654
No 199
>PRK14873 primosome assembly protein PriA; Provisional
Probab=26.23 E-value=42 Score=42.58 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=15.9
Q ss_pred ceeeeeeccCCCCcchhHHHHHHHHHHHH
Q 000915 517 LRVKKIMKRPAEDKDSSELVQELRKEIRE 545 (1225)
Q Consensus 517 ~r~kki~rr~~~~k~s~~~vq~lr~eire 545 (1225)
=|++.++|-+..+ ...|.+-||.....
T Consensus 619 ~~~r~~~~~~~~~--~~~l~~~l~~~~~~ 645 (665)
T PRK14873 619 DRVRALVRVPRAR--GAELAAALRRAVAV 645 (665)
T ss_pred ccEEEEEEecCcc--HHHHHHHHHHHHHH
Confidence 3578888875533 34566666655433
No 200
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=25.86 E-value=36 Score=41.60 Aligned_cols=33 Identities=33% Similarity=0.785 Sum_probs=21.0
Q ss_pred ccccCCCCccccccccCCCCCCCCCCcccCCCCCCCCC
Q 000915 144 SIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVP 181 (1225)
Q Consensus 144 LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~~p 181 (1225)
|++|..|..--+.+|+..-. .-||||.|....+
T Consensus 5 L~fC~~C~~irc~~c~~~Ei-----~~~yCp~CL~~~p 37 (483)
T PF05502_consen 5 LYFCEHCHKIRCPRCVSEEI-----DSYYCPNCLFEVP 37 (483)
T ss_pred ceecccccccCChhhccccc-----ceeECccccccCC
Confidence 56677666655555655443 3588888877754
No 201
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=25.80 E-value=45 Score=36.20 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.3
Q ss_pred cccccccCCCCccccccccCCCC
Q 000915 141 LDTSIACDSCDLWYHAFCVGFDP 163 (1225)
Q Consensus 141 eD~LLlCDsCD~aYH~~CLgPPL 163 (1225)
+++|+-|..|-++||+..|.++.
T Consensus 121 ~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 121 DNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred hheEEecCCccceeehhhCCCCc
Confidence 45899999999999999999874
No 202
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=25.78 E-value=57 Score=32.44 Aligned_cols=27 Identities=30% Similarity=0.626 Sum_probs=20.2
Q ss_pred CCcccHhHHhhhc---------ccCCCCCCcccccc
Q 000915 44 QHWFCFACIDNWS---------TITNLCPLCQGEFQ 70 (1225)
Q Consensus 44 gHtFC~~CIqqWl---------K~knSCPLCRaeFs 70 (1225)
.-.||..||..+- ...+.||.||..-.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 7779999987643 23678999998443
No 203
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.26 E-value=27 Score=40.53 Aligned_cols=44 Identities=16% Similarity=0.454 Sum_probs=31.4
Q ss_pred cccccccccccccccee------cCCCCcccHhHHhhhcccCCCCCCcccc
Q 000915 24 CGRCGICMDVVIDRGVL------DCCQHWFCFACIDNWSTITNLCPLCQGE 68 (1225)
Q Consensus 24 d~tCpICLE~fsD~~vL------~pCgHtFC~~CIqqWlK~knSCPLCRae 68 (1225)
...||||-..-.- .++ ..=.|.+|..|-.+|......||.|...
T Consensus 184 ~~~CPvCGs~P~~-s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVA-SMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhh-hhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 3489999876321 111 1123558999999999999999999764
No 204
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.07 E-value=58 Score=37.90 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCccc---c--CCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 123 GDGCKIRSGSMVAE---E--SSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 123 ~~~CkVCgGs~~~~---D--dddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
...|.|||+.+.-. . ..+....+.|.-|...||..= --|+.|-..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R------------~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVR------------VKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccC------------ccCCCCCCC
Confidence 35899998764321 1 123457899999999888431 138888765
No 205
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=24.42 E-value=25 Score=45.38 Aligned_cols=48 Identities=15% Similarity=0.392 Sum_probs=34.5
Q ss_pred ccccccccccccccc-ceecCCCCcccHhHHhhhc------ccCCCCCCcccccc
Q 000915 23 ECGRCGICMDVVIDR-GVLDCCQHWFCFACIDNWS------TITNLCPLCQGEFQ 70 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~-~vL~pCgHtFC~~CIqqWl------K~knSCPLCRaeFs 70 (1225)
....|-.|...+.+. -++..|++.||..|+..|- +....|++|+....
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred cchhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 345789998876542 4677899999999999993 12456777765543
No 206
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=24.08 E-value=30 Score=34.32 Aligned_cols=31 Identities=26% Similarity=0.602 Sum_probs=21.1
Q ss_pred CCC---CccccccccCCC-----CCCCCCCcccCCCCCC
Q 000915 148 DSC---DLWYHAFCVGFD-----PEGTCEDTWLCPRCVA 178 (1225)
Q Consensus 148 DsC---D~aYH~~CLgPP-----Le~VPeGDWfCP~C~~ 178 (1225)
..| ...|...||.-. .+...+.+|.||.|+.
T Consensus 31 ~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 31 SSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 566 666777776543 2334578899999976
No 207
>PF12773 DZR: Double zinc ribbon
Probab=23.79 E-value=86 Score=26.42 Aligned_cols=10 Identities=50% Similarity=1.099 Sum_probs=5.0
Q ss_pred cccCCCCCCC
Q 000915 170 TWLCPRCVAE 179 (1225)
Q Consensus 170 DWfCP~C~~~ 179 (1225)
.++|+.|-..
T Consensus 29 ~~~C~~Cg~~ 38 (50)
T PF12773_consen 29 KKICPNCGAE 38 (50)
T ss_pred CCCCcCCcCC
Confidence 4555555444
No 208
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=23.71 E-value=33 Score=39.91 Aligned_cols=44 Identities=18% Similarity=0.552 Sum_probs=31.6
Q ss_pred ccccccccccccccccee-----cCCCCcccHhHHhhhcccCCCCCCccc
Q 000915 23 ECGRCGICMDVVIDRGVL-----DCCQHWFCFACIDNWSTITNLCPLCQG 67 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~~vL-----~pCgHtFC~~CIqqWlK~knSCPLCRa 67 (1225)
..-.||||-..-.- .++ ..=.|.+|..|-..|.-....||.|..
T Consensus 186 ~~~~CPvCGs~P~~-s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVS-SVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchh-heeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 35689999876321 111 122455899999999999999999976
No 209
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=23.61 E-value=61 Score=29.39 Aligned_cols=44 Identities=23% Similarity=0.420 Sum_probs=31.0
Q ss_pred ccccccccccccc---ccceecCCCCcccHhHHhhhcccCCCCCC--cccccc
Q 000915 23 ECGRCGICMDVVI---DRGVLDCCQHWFCFACIDNWSTITNLCPL--CQGEFQ 70 (1225)
Q Consensus 23 Ed~tCpICLE~fs---D~~vL~pCgHtFC~~CIqqWlK~knSCPL--CRaeFs 70 (1225)
....|.+|-+.|. +..+.+.|+-.||+.|-.. ...|-. |...|.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~~~ 52 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTGFE 52 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCCcc
Confidence 4568999999994 4467888999999999332 344555 655543
No 210
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.71 E-value=65 Score=39.39 Aligned_cols=10 Identities=40% Similarity=0.959 Sum_probs=8.1
Q ss_pred cccCCCCCCC
Q 000915 170 TWLCPRCVAE 179 (1225)
Q Consensus 170 DWfCP~C~~~ 179 (1225)
.|.||.|-..
T Consensus 253 ~~~Cp~C~s~ 262 (505)
T TIGR00595 253 PKTCPQCGSE 262 (505)
T ss_pred CCCCCCCCCC
Confidence 4889999775
No 211
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.97 E-value=36 Score=44.15 Aligned_cols=41 Identities=29% Similarity=0.687 Sum_probs=30.0
Q ss_pred CCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 124 ~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
..|..|++. -+.-..--.|++.||..|++ +++--||.|+..
T Consensus 841 skCs~C~~~--------LdlP~VhF~CgHsyHqhC~e-------~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGT--------LDLPFVHFLCGHSYHQHCLE-------DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCc--------cccceeeeecccHHHHHhhc-------cCcccCCccchh
Confidence 579999532 23445556899999999999 344569999884
No 212
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=21.90 E-value=61 Score=35.22 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=27.9
Q ss_pred cccccccccccc--c---c--ccceecCCCCcccHhHHhhhcccCCCCCCcc
Q 000915 22 FECGRCGICMDV--V---I--DRGVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (1225)
Q Consensus 22 sEd~tCpICLE~--f---s--D~~vL~pCgHtFC~~CIqqWlK~knSCPLCR 66 (1225)
.....|.||.+. + . ....+..|+..||..|... ..||.|.
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred hCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 345789999853 1 1 1245678999999999542 5699994
No 213
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=21.47 E-value=44 Score=41.20 Aligned_cols=21 Identities=33% Similarity=0.697 Sum_probs=15.6
Q ss_pred ccccccC--CCCccccccccCCC
Q 000915 142 DTSIACD--SCDLWYHAFCVGFD 162 (1225)
Q Consensus 142 D~LLlCD--sCD~aYH~~CLgPP 162 (1225)
+.-+.|. .|-++||..|..-.
T Consensus 314 GtcIqCs~~nC~~aYHVtCArra 336 (669)
T COG5141 314 GTCIQCSYFNCTRAYHVTCARRA 336 (669)
T ss_pred cceeeecccchhhhhhhhhhhhc
Confidence 3456666 58899999998654
No 214
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=21.44 E-value=61 Score=30.32 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=21.4
Q ss_pred cCCCCCCCCCCCCccccCCCcccccccCCCCccccccccC
Q 000915 121 LDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVG 160 (1225)
Q Consensus 121 ~D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLg 160 (1225)
.+...|.+|++.. ++..+.++ -|+..||..|..
T Consensus 76 ~~~~~C~vC~k~l-----~~~~f~~~--p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPL-----GNSVFVVF--PCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcC-----CCceEEEe--CCCeEEeccccc
Confidence 3567899997653 22234444 455899999974
No 215
>PF15296 Codanin-1_C: Codanin-1 C-terminus
Probab=20.89 E-value=1.1e+02 Score=31.50 Aligned_cols=41 Identities=34% Similarity=0.418 Sum_probs=32.4
Q ss_pred CCCccCCCCCCCCCchhhhHHHHHHHHHHHHhcChhhhhhhhh
Q 000915 833 MKPVLAPSHHNKIPISVRQTQLYRLTEFFLRKANLPVIRRTAE 875 (1225)
Q Consensus 833 mrp~l~~~~~~kvp~svrq~ql~rl~eh~l~k~nl~~irr~a~ 875 (1225)
++|+-+..+.........|.|+ +|.|+||+.-+ +.+||+.|
T Consensus 48 ITp~s~~~~~~~~~~~~~~lQ~-qLeeaFfh~Qp-~SlRRtVe 88 (121)
T PF15296_consen 48 ITPVSAQLPQPSRSSSPKQLQL-QLEEAFFHSQP-ASLRRTVE 88 (121)
T ss_pred ecccccccCCccccccHHHHHH-HHHHHHHhcCC-HHHHHHHH
Confidence 3365555466667778888898 99999999887 88999987
No 216
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=20.70 E-value=33 Score=40.67 Aligned_cols=46 Identities=24% Similarity=0.548 Sum_probs=28.2
Q ss_pred ccccccccccccccc----ceecCCCCcc--------cHhHHhhhc-----ccCCCCCCcccc
Q 000915 23 ECGRCGICMDVVIDR----GVLDCCQHWF--------CFACIDNWS-----TITNLCPLCQGE 68 (1225)
Q Consensus 23 Ed~tCpICLE~fsD~----~vL~pCgHtF--------C~~CIqqWl-----K~knSCPLCRae 68 (1225)
.++.|++|-+.+..- ..+.+|...| ++.|+..-. .....||.||-.
T Consensus 14 l~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 14 LGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred cccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 357899999987532 2344554333 566765432 226679999853
No 217
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=20.04 E-value=32 Score=43.01 Aligned_cols=55 Identities=20% Similarity=0.477 Sum_probs=33.6
Q ss_pred ccccc-CCCCCCCCCCCCccccCCCcccccccCCCCccccccccCCCCCCCCCCcccCCCCCCC
Q 000915 117 AVICL-DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 117 ~viC~-D~~~CkVCgGs~~~~DdddeD~LLlCDsCD~aYH~~CLgPPLe~VPeGDWfCP~C~~~ 179 (1225)
+..|. .+-.|.+|......--. ..+...-|+.|..+||..|+.-.... ||.|...
T Consensus 504 C~lC~~~gfiCe~Cq~~~iiyPF-~~~~~~rC~~C~avfH~~C~~r~s~~-------CPrC~R~ 559 (580)
T KOG1829|consen 504 CDLCTGKGFICELCQHNDIIYPF-ETRNTRRCSTCLAVFHKKCLRRKSPC-------CPRCERR 559 (580)
T ss_pred chhhccCeeeeeeccCCCccccc-ccccceeHHHHHHHHHHHHHhccCCC-------CCchHHH
Confidence 33443 35668888322100000 02345669999999999999877532 9999654
Done!