Query 000915
Match_columns 1225
No_of_seqs 234 out of 2050
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 15:54:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000915.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_685-689//hhsearch_pdb/000915hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 108.0 4.7 101 19-179 2-104 (111)
2 2kwj_A Zinc finger protein DPF 1.0 1 1 106.8 4.1 98 25-179 2-108 (114)
3 3v43_A Histone acetyltransfera 1.0 1 1 100.8 8.5 101 23-179 4-112 (112)
4 4ap4_A E3 ubiquitin ligase RNF 1.0 1 1 99.7 -1.2 115 21-181 4-124 (133)
5 3ask_A E3 ubiquitin-protein li 1.0 1 1 99.3 4.7 55 118-179 170-225 (226)
6 2e6r_A Jumonji/ARID domain-con 1.0 1 1 96.4 3.5 56 118-179 11-66 (92)
7 3u5n_A E3 ubiquitin-protein li 1.0 1 1 91.9 5.4 49 122-179 6-54 (207)
8 4ayc_A E3 ubiquitin-protein li 1.0 1 1 91.1 2.9 49 23-72 52-100 (138)
9 1wev_A Riken cDNA 1110020M19; 1.0 1 1 90.1 2.1 54 122-179 15-72 (88)
10 2e6s_A E3 ubiquitin-protein li 1.0 1 1 89.3 5.6 56 117-179 21-77 (77)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=108.03 Aligned_cols=101 Identities=22% Similarity=0.414 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCCCCCCC--CCCEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 25766450312322333--6523058999356857842002699898866653200104534578987655766667886
Q 000915 19 LLNFECGRCGICMDVVI--DRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRGED 96 (1225)
Q Consensus 19 ssSsEdetCsICLE~lt--Dr~vLdpCgHtFC~sCIeqWaEkknSCPLCRaeFs~It~VPvyDtiGselVdk~sLkrrDD 96 (1225)
++..++..|.||.+... +......|...||..|+...... + .+
T Consensus 2 s~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~--------------------------------~-~~-- 46 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP--------------------------------L-KR-- 46 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCT--------------------------------T-TS--
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCC--------------------------------C-CC--
T ss_conf 888997999578998887588599999977396770886554--------------------------------4-56--
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20210025788997434766522369997787799875445898643423688882255666688899999995339779
Q 000915 97 WSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRC 176 (1225)
Q Consensus 97 isIEEEDqTiSfPS~yIDEe~viC~D~~~CeVCgGs~~redsdded~LLLCDsCD~aYH~~CLgPpLe~VPeGdW~CP~C 176 (1225)
..+.|.+...|.+|+.. ++++.||+||.|+++||++|++|++..+|.++||||.|
T Consensus 47 -------------------~~W~C~~C~~C~~C~~~------~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C 101 (111)
T 2ysm_A 47 -------------------AGWQCPECKVCQNCKQS------GEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNC 101 (111)
T ss_dssp -------------------TTCCCTTTCCCTTTCCC------SCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHH
T ss_pred -------------------CCCCCCCCCCCCCCCCC------CCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf -------------------68658767826234765------89877658999980886986587656688988299288
Q ss_pred CCC
Q ss_conf 988
Q 000915 177 VAE 179 (1225)
Q Consensus 177 ~~~ 179 (1225)
..-
T Consensus 102 ~~c 104 (111)
T 2ysm_A 102 RIC 104 (111)
T ss_dssp HCC
T ss_pred CCC
T ss_conf 272
No 2
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=106.85 Aligned_cols=98 Identities=21% Similarity=0.427 Sum_probs=67.4
Q ss_pred CCCCCCCCCCC---------CCCEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 50312322333---------652305899935685784200269989886665320010453457898765576666788
Q 000915 25 GRCGICMDVVI---------DRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRGE 95 (1225)
Q Consensus 25 etCsICLE~lt---------Dr~vLdpCgHtFC~sCIeqWaEkknSCPLCRaeFs~It~VPvyDtiGselVdk~sLkrrD 95 (1225)
..|.||+.... +......|+..||..|+..+... ...+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~-------------~~~~-------------------- 48 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNM-------------TEAV-------------------- 48 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHH-------------HHHH--------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHH-------------HHCC--------------------
T ss_conf 8086588975344467999998692989983232138784664-------------3116--------------------
Q ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62021002578899743476652236999778779987544589864342368888225566668889999999533977
Q 000915 96 DWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPR 175 (1225)
Q Consensus 96 DisIEEEDqTiSfPS~yIDEe~viC~D~~~CeVCgGs~~redsdded~LLLCDsCD~aYH~~CLgPpLe~VPeGdW~CP~ 175 (1225)
....+.|.+...|.+|+.. ++.+.||+||+|+++||++|++||+..+|.|+|||+.
T Consensus 49 ------------------~~~~W~C~~C~~C~~C~~~------~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~ 104 (114)
T 2kwj_A 49 ------------------KTYKWQCIECKSCILCGTS------ENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHL 104 (114)
T ss_dssp ------------------HHTTCCCGGGCCCTTTTCC------TTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHH
T ss_pred ------------------CCCCCCCCCCCCCCCCCCC------CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf ------------------8775175662733756346------8887457748989410250459874678897819924
Q ss_pred CCCC
Q ss_conf 9988
Q 000915 176 CVAE 179 (1225)
Q Consensus 176 C~~~ 179 (1225)
|...
T Consensus 105 C~~~ 108 (114)
T 2kwj_A 105 CWEL 108 (114)
T ss_dssp HHHH
T ss_pred CCCH
T ss_conf 1034
No 3
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=100.85 Aligned_cols=101 Identities=18% Similarity=0.360 Sum_probs=68.7
Q ss_pred CCCCCCCCCCCC--------CCCCEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 645031232233--------365230589993568578420026998988666532001045345789876557666678
Q 000915 23 ECGRCGICMDVV--------IDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRG 94 (1225)
Q Consensus 23 EdetCsICLE~l--------tDr~vLdpCgHtFC~sCIeqWaEkknSCPLCRaeFs~It~VPvyDtiGselVdk~sLkrr 94 (1225)
....|.+|+..- ........|+..||..||..+... ...
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~----------~~~----------------------- 50 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPEL----------TVR----------------------- 50 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHH----------HHH-----------------------
T ss_pred CCCCCCCCCCCHHHCCCCCCHHCEEHHHCCCCCCCCHHCCCHHH----------HHH-----------------------
T ss_conf 67613103893342768991116375344998897035388899----------987-----------------------
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86202100257889974347665223699977877998754458986434236888822556666888999999953397
Q 000915 95 EDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCP 174 (1225)
Q Consensus 95 DDisIEEEDqTiSfPS~yIDEe~viC~D~~~CeVCgGs~~redsdded~LLLCDsCD~aYH~~CLgPpLe~VPeGdW~CP 174 (1225)
+....+.|.+...|.+|+.. +.+.+.||+||.|+++||++|+.|++..+|.++|||+
T Consensus 51 ------------------~~~~~W~C~~C~~C~vC~~~-----~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~ 107 (112)
T 3v43_A 51 ------------------VKALRWQCIECKTCSSCRDQ-----GKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQ 107 (112)
T ss_dssp ------------------HHTSCCCCTTTCCBTTTCCC-----CCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCT
T ss_pred ------------------HHCCCCCCCCCCCCCCCCCC-----CCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCEECC
T ss_conf ------------------54246530117754466686-----8885656874899891566358999898999885797
Q ss_pred CCCCC
Q ss_conf 79988
Q 000915 175 RCVAE 179 (1225)
Q Consensus 175 ~C~~~ 179 (1225)
.|+..
T Consensus 108 ~C~~k 112 (112)
T 3v43_A 108 ICRPR 112 (112)
T ss_dssp TTSCC
T ss_pred CCCCC
T ss_conf 87896
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=99.70 Aligned_cols=115 Identities=23% Similarity=0.432 Sum_probs=77.3
Q ss_pred CCCCCCCCCCCCCCCCC------CEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 76645031232233365------230589993568578420026998988666532001045345789876557666678
Q 000915 21 NFECGRCGICMDVVIDR------GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRG 94 (1225)
Q Consensus 21 SsEdetCsICLE~ltDr------~vLdpCgHtFC~sCIeqWaEkknSCPLCRaeFs~It~VPvyDtiGselVdk~sLkrr 94 (1225)
..+...|+||++.+.++ .+..+|||.||..||.+|.+....||+||..+......+.
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l----------------- 66 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI----------------- 66 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC-----------------
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-----------------
T ss_conf 799999950694553744356685834788756399999999848999889870764555532-----------------
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86202100257889974347665223699977877998754458986434236888822556666888999999953397
Q 000915 95 EDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCP 174 (1225)
Q Consensus 95 DDisIEEEDqTiSfPS~yIDEe~viC~D~~~CeVCgGs~~redsdded~LLLCDsCD~aYH~~CLgPpLe~VPeGdW~CP 174 (1225)
+.+ .+...|.||........ ........-.|...||..|+...+.. ...||
T Consensus 67 -----------------~i~------~~~~~C~iC~~~~~~~~--~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP 117 (133)
T 4ap4_A 67 -----------------YIG------SGTVSCPICMDGYSEIV--QNGRLIVSTECGHVFCSQCLRDSLKN----ANTCP 117 (133)
T ss_dssp -----------------BCS------SSSCBCTTTCCBHHHHH--HTTCCEEEETTSBEEEHHHHHHHHHH----CSBCT
T ss_pred -----------------CCC------CCCCCCCCCCCCCCCCC--CCCCCEEECCCCCHHHHHHHHHHHHC----CCCCC
T ss_conf -----------------248------88898987877623565--56766586788972149999999974----99897
Q ss_pred CCCCCCC
Q ss_conf 7998888
Q 000915 175 RCVAEVP 181 (1225)
Q Consensus 175 ~C~~~~e 181 (1225)
.|+....
T Consensus 118 ~Cr~~~~ 124 (133)
T 4ap4_A 118 TCRKKIN 124 (133)
T ss_dssp TTCCBCC
T ss_pred CCCCCCC
T ss_conf 8898378
No 5
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=99.34 Aligned_cols=55 Identities=25% Similarity=0.800 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 2236999778779987544589864342368888225566668889999999-5339779988
Q 000915 118 VICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCED-TWLCPRCVAE 179 (1225)
Q Consensus 118 viC~D~~~CeVCgGs~~redsdded~LLLCDsCD~aYH~~CLgPpLe~VPeG-dW~CP~C~~~ 179 (1225)
+.|.++ .|.+|+.. ++.+.||+||+|+.+||++||+||+..+|.| +|+||.|...
T Consensus 170 w~C~~c-~C~vC~~~------~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 170 RLCRVC-ACHLCGGR------QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCCTTT-SCSSSCCC------CC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred EECCCC-CCCCCCCC------CCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 766888-88688997------999876883899941007567887456989988789387494
No 6
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=96.42 Aligned_cols=56 Identities=29% Similarity=0.616 Sum_probs=47.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22369997787799875445898643423688882255666688899999995339779988
Q 000915 118 VICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 118 viC~D~~~CeVCgGs~~redsdded~LLLCDsCD~aYH~~CLgPpLe~VPeGdW~CP~C~~~ 179 (1225)
+.+.+...|.+|+.. ++.+.||+||+|+.+||++|++||+..+|.++||||.|...
T Consensus 11 ~~~~~~~~C~vC~~~------~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRG------DEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCS------GGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred HHCCCCCCCCCCCCC------CCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 134688988368996------99877888179984334534798846588987498047283
No 7
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=91.88 Aligned_cols=49 Identities=18% Similarity=0.471 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9997787799875445898643423688882255666688899999995339779988
Q 000915 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1225)
Q Consensus 122 D~~~CeVCgGs~~redsdded~LLLCDsCD~aYH~~CLgPpLe~VPeGdW~CP~C~~~ 179 (1225)
..+.|.+|++. +.||+||+|+++||++|++|++..+|.|+|+||.|...
T Consensus 6 ~~~~C~~C~~~---------g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNG---------GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCC---------EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC---------CCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEECC
T ss_conf 88989888999---------93677699998438715899988889988786842686
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=91.14 Aligned_cols=49 Identities=31% Similarity=0.729 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf 64503123223336523058999356857842002699898866653200
Q 000915 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72 (1225)
Q Consensus 23 EdetCsICLE~ltDr~vLdpCgHtFC~sCIeqWaEkknSCPLCRaeFs~I 72 (1225)
++..|+||++.+.+ ++..+|||+||..||..|......||+||..+...
T Consensus 52 ~~~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCCCCCCCCCCCCC-CEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 15997562723279-66788999846999999997699699999827889
No 9
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=90.11 Aligned_cols=54 Identities=20% Similarity=0.483 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCC
Q ss_conf 99977877998754458986434236888822556666888999----99995339779988
Q 000915 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEG----TCEDTWLCPRCVAE 179 (1225)
Q Consensus 122 D~~~CeVCgGs~~redsdded~LLLCDsCD~aYH~~CLgPpLe~----VPeGdW~CP~C~~~ 179 (1225)
....|.+|+.. ++.+.+.||+||+|+.+||++|++|++.. +|.++|||+.|...
T Consensus 15 ~~~~C~vC~~~----~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQM----TVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCC----CCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCCCCCCCCC----CCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCEECCCCCCH
T ss_conf 97958788998----88899826777999895867548886544446788988568664064
No 10
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=89.27 Aligned_cols=56 Identities=25% Similarity=0.780 Sum_probs=46.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 52236999778779987544589864342368888225566668889999999-5339779988
Q 000915 117 AVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCED-TWLCPRCVAE 179 (1225)
Q Consensus 117 ~viC~D~~~CeVCgGs~~redsdded~LLLCDsCD~aYH~~CLgPpLe~VPeG-dW~CP~C~~~ 179 (1225)
.+.|.+. .|.+|+.. ++.+.||+||+|+.+||++||+||+..+|.| +||||.|...
T Consensus 21 ~w~C~~c-~C~vC~~~------~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~d 77 (77)
T 2e6s_A 21 EKKCHSC-SCRVCGGK------HEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77 (77)
T ss_dssp SSCCSSS-SCSSSCCC------CCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCCC
T ss_pred CEECCCC-CCCCCCCC------CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8689888-88276996------999987884899960006356887467887987389182182
Done!