BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000916
(1225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 136/212 (64%), Gaps = 19/212 (8%)
Query: 168 LTSRIEKDANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLE 227
L ++E+D +L+ I++ER LP+ F+ I + N VV+I G TGCGKTTQVPQF+L+
Sbjct: 40 LXYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILD 99
Query: 228 HIWS--KGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGK-HSSIV 284
+ C IV TQPRRISA SVAER++ ERGE G + GY +R ES + H+SI
Sbjct: 100 DFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIX 159
Query: 285 FCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDML 344
FCT GVLLR L + + ++H+IVDEIHERD +DF+L ++RD++
Sbjct: 160 FCTVGVLLRKL----------------EAGIRGISHVIVDEIHERDINTDFLLVVLRDVV 203
Query: 345 PSYPHLRLILMSATLDADRFSQYFGGCPVIQV 376
+YP +R++L SAT+D F +YF CP+I+V
Sbjct: 204 QAYPEVRIVLXSATIDTSXFCEYFFNCPIIEV 235
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 135/226 (59%), Gaps = 21/226 (9%)
Query: 181 IVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVC 240
I++ R +LP+ + +D +NQ+++ GETG GKTTQ+PQF+L E ++ C
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145
Query: 241 TQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGV 300
TQPRR++A SVA+R++ E +G+ +GY IR E+K + + + T+G+LLR +
Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED-- 203
Query: 301 SRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLD 360
D+S + II+DE HER +D ++ +++ ++ P L++I+MSATLD
Sbjct: 204 ------------HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLD 251
Query: 361 ADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSA 406
A++F +YF P++ VPG TYPV+ +Y + + ++LDSA
Sbjct: 252 AEKFQRYFNDAPLLAVPGRTYPVELYYTPEF-------QRDYLDSA 290
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/457 (28%), Positives = 212/457 (46%), Gaps = 40/457 (8%)
Query: 554 KICMDSEDGAILVFLPGWEDINKTRDR--LLANPFFRDTS--KFVIIPLHSMVPSVQQKK 609
+I E G IL+FL G ++I + L + R+ + PL+ +P QQ++
Sbjct: 296 QIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQR 355
Query: 610 VFKRPP------PGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSS 663
+F+ P PG RK+++STNIAET++TID +VYV+D G K+K Y+P V +L S
Sbjct: 356 IFEPAPESHNGRPG-RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVS 414
Query: 664 WVSKASAKQRAGRAGRCQAGICYHLYS-QLRAASLPDFQVPEIKRIPIEELCLQVKLLDP 722
+SKASA+QRAGRAGR + G C+ LY+ + L + PEI R + L++K L
Sbjct: 415 PISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKL-- 472
Query: 723 NCNIEDFLQ-KTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKML 781
I+D + +DPP T+ A+ L + L + +T LG + P+++ ML
Sbjct: 473 --GIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVML 530
Query: 782 FFAILMDCLDPALTLACASDYRDPFTLPISPNEKKRATAAKFELASLYGGQSDQLAVIAA 841
+ C LT+ + F P +KKRA AK A G L V A
Sbjct: 531 IGSFEFQCSQEILTIVAMLSVPNVFIRPT--KDKKRADDAKNIFAHPDGDHITLLNVYHA 588
Query: 842 FECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVSSCSHNARV 901
F+ A + G W C ++++ ++ +R QL E + N + E ++ + +
Sbjct: 589 FKS-DEAYEYGIHKW-CRDHYLNYRSLSAADNIRSQL--ERLMNRYNLELNTTDYESPKY 644
Query: 902 PGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLM 961
I L +G + VA+ R + ++ V +HP ++ D +
Sbjct: 645 FDNIRKALASGFFMQVAKKR---SGAKGYITVKDNQDVLIHPSTV-------LGHDAEWV 694
Query: 962 VYDEITRGDGGMHVRNCTVVGPLPLLLLATEIAVAPA 998
+Y+E ++R T V P L I +APA
Sbjct: 695 IYNEFVLTSKN-YIRTVTSVRPEWL------IEIAPA 724
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 135/226 (59%), Gaps = 21/226 (9%)
Query: 181 IVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVC 240
I++ R +LP+ + +D +NQ+++ GETG GKTTQ+PQF+L E ++ C
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVAC 145
Query: 241 TQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGV 300
TQPRR++A SVA+R++ E +G+ +GY IR E+K + + + T+G+LLR +
Sbjct: 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED-- 203
Query: 301 SRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLD 360
D+S + II+DE HER +D ++ +++ ++ P L++I+MSATLD
Sbjct: 204 ------------HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLD 251
Query: 361 ADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSA 406
A++F +YF P++ VPG TYPV+ +Y + + ++LDSA
Sbjct: 252 AEKFQRYFNDAPLLAVPGRTYPVELYYTPEF-------QRDYLDSA 290
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/457 (28%), Positives = 212/457 (46%), Gaps = 40/457 (8%)
Query: 554 KICMDSEDGAILVFLPGWEDINKTRDR--LLANPFFRDTS--KFVIIPLHSMVPSVQQKK 609
+I E G IL+FL G ++I + L + R+ + PL+ +P QQ++
Sbjct: 296 QIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQR 355
Query: 610 VFKRPP------PGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSS 663
+F+ P PG RK+++STNIAET++TID +VYV+D G K+K Y+P V +L S
Sbjct: 356 IFEPAPESHNGRPG-RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVS 414
Query: 664 WVSKASAKQRAGRAGRCQAGICYHLYS-QLRAASLPDFQVPEIKRIPIEELCLQVKLLDP 722
+SKASA+QRAGRAGR + G C+ LY+ + L + PEI R + L++K L
Sbjct: 415 PISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKL-- 472
Query: 723 NCNIEDFLQ-KTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKML 781
I+D + +DPP T+ A+ L + L + +T LG + P+++ ML
Sbjct: 473 --GIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVML 530
Query: 782 FFAILMDCLDPALTLACASDYRDPFTLPISPNEKKRATAAKFELASLYGGQSDQLAVIAA 841
+ C LT+ + F P +KKRA AK A G L V A
Sbjct: 531 IGSFEFQCSQEILTIVAMLSVPNVFIRPT--KDKKRADDAKNIFAHPDGDHITLLNVYHA 588
Query: 842 FECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVSSCSHNARV 901
F+ A + G W C ++++ ++ +R QL E + N + E ++ + +
Sbjct: 589 FKS-DEAYEYGIHKW-CRDHYLNYRSLSAADNIRSQL--ERLMNRYNLELNTTDYESPKY 644
Query: 902 PGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLM 961
I L +G + VA+ R + ++ V +HP ++ D +
Sbjct: 645 FDNIRKALASGFFMQVAKKR---SGAKGYITVKDNQDVLIHPSTV-------LGHDAEWV 694
Query: 962 VYDEITRGDGGMHVRNCTVVGPLPLLLLATEIAVAPA 998
+Y+E ++R T V P L I +APA
Sbjct: 695 IYNEFVLTSKN-YIRTVTSVRPEWL------IEIAPA 724
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 18/208 (8%)
Query: 741 TIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACAS 800
T+ A+ L +GAL + +T LG ++ + P++ KML ++ + C + LT+
Sbjct: 19 TLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSML 78
Query: 801 DYRDPFTLPISPNEKKRATAAKFELASLYGGQSDQLAVIAAFECWKNAKQRGQEAWFCSQ 860
++ F P K + A + A + + D L ++A + WKN K W C +
Sbjct: 79 SVQNVFYRP-----KDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNK--FSNPW-CYE 130
Query: 861 YFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVSSCSHNARVPGIIHAVLMAGLYPMVARL 920
F+ + + +RKQ+ + ++ DV SC + + + +G + A+
Sbjct: 131 NFIQARSLRRAQDIRKQMLGIMDRHKL---DVVSCGKSTVR---VQKAICSGFFRNAAK- 183
Query: 921 RPPHKNGRRFVETAGGAKVRLHPHSLNF 948
+ P + R ++ V +HP S F
Sbjct: 184 KDPQEGYRTLIDQ---QVVYIHPSSALF 208
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 394 ILKSAESNHLDSASLIVPN-EDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPN 452
+L++A + D +++ N D T+ + T + LA SN +++ L+ N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYT---PLHLAASNGHLEIVEVLLKNGADVN 74
Query: 453 VYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQ 512
+ LTG+TPL + A G + V +LL GAD DG T L L + E+ +
Sbjct: 75 ASD----LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVE 130
Query: 513 IIKKH 517
++ KH
Sbjct: 131 VLLKH 135
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 397 SAESNHLDSASLIVPNEDPELTEENKSTLD--EAISLAWSNDEFDMLLELVSLEGSPNVY 454
+A + HL+ +++ N + N S L + LA + +++ L+ N Y
Sbjct: 54 AASNGHLEIVEVLLKNG----ADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAY 109
Query: 455 NYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
+ G TPL + A G + V +LL GAD + K G+TA + ++A+I+
Sbjct: 110 DND----GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 515 K 515
+
Sbjct: 166 Q 166
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 397 SAESNHLDSASLIVPN-EDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYN 455
+AE+ H + L++ DP + + T + LA N +++ L+S PN +
Sbjct: 44 AAENGHKEVVKLLLSQGADPNAKDSDGKT---PLHLAAENGHKEVVKLLLSQGADPNAKD 100
Query: 456 YQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIK 515
G TPL + A G V +LLS GAD DGRT L L + EV ++++
Sbjct: 101 SD----GKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Query: 516 KH 517
K
Sbjct: 157 KQ 158
Score = 37.0 bits (84), Expect = 0.074, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
G TPL + A G V +LLS GAD K DG+T L L + EV +++
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 397 SAESNHLDSASLIVP-NEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYN 455
+ N+LD L++P P N T + +A ++ ++ L+ GS N +
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYT---PLHIAAKQNQVEVARSLLQYGGSANAES 242
Query: 456 YQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIK 515
Q G+TPL + A +G V +LLS A+ L K G T L L QE VA ++
Sbjct: 243 VQ----GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 516 KH 517
KH
Sbjct: 299 KH 300
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENA 521
GLTPL V + V +LL G A +G T L + ++NQ EVA+ + ++ +A
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 522 LSDSMKQQLLDKYLATV--NPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRD 579
++S+ Q + +LA + E++ L+L +Q + ++ G + L E D
Sbjct: 239 NAESV-QGVTPLHLAAQEGHAEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGHVPVAD 295
Query: 580 RLLANPFFRD-TSKFVIIPLH 599
L+ + D T++ PLH
Sbjct: 296 VLIKHGVMVDATTRMGYTPLH 316
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQ-IIKKHMEN 520
G TPL A +G V +L+S GAD K DGRT L +E E+ + +I K +
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 521 ALSDSMKQQLLDKYLATVNPELIDLV 546
SDS + LD N E++ L+
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G TPL A +G V +L+S GAD DGRT L L + E+ ++++K
Sbjct: 103 GRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 37.7 bits (86), Expect = 0.039, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
G TPL A +G V +L+S GAD K DGRT L +E E+ +++
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A +G + V +LL GAD K KDG T L L +E E+ +++ K
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A +G + V +LL GAD K KDG T L L +E E+ +++ K
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 466 LMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
L+ A G+ +V +L++ GAD K KDG T L L +E E+ +++ K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 68
Score = 33.1 bits (74), Expect = 0.90, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIK 515
G TPL + A +G + V +LL GAD + K G+TA + ++A+I++
Sbjct: 113 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A +G + V +LL GAD K KDG T L L +E E+ +++ K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A +G + V +LL GAD K KDG T L L +E E+ +++ K
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 34.3 bits (77), Expect = 0.41, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A +G + V +LL GAD + K G+T L ++A++++K
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 466 LMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
L+ A G+ +V +L++ GAD K KDG T L L +E E+ +++ K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A +G + V +LL GAD K KDG T L L +E E+ +++ K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A +G + V +LL GAD K KDG T L L +E E+ +++ K
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 37.4 bits (85), Expect = 0.056, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A +G + V +LL GAD + K G+T L +E ++A++++K
Sbjct: 101 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 466 LMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
L+ A G+ +V +L++ GAD K KDG T L L +E E+ +++ K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 397 SAESNHLDSASLIVPN-EDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYN 455
+AE+ H + L++ DP + + T + A N +++ L+S PN +
Sbjct: 44 AAENGHKEIVKLLLSKGADPNAKDSDGRT---PLHYAAENGHKEIVKLLLSKGADPNAKD 100
Query: 456 YQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIK 515
G TPL A G V +LLS GAD DGRT L L + E+ ++++
Sbjct: 101 SD----GRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Query: 516 KH 517
K
Sbjct: 157 KQ 158
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 423 STLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLL 482
S L + + A N D + +L+ PN + G TPL A G V +LL
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSD----GRTPLHYAAENGHKEIVKLLL 57
Query: 483 SLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
S GAD K DGRT L + E+ +++
Sbjct: 58 SKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 89
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 397 SAESNHLDSASLIV-PNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYN 455
+A + HL+ L++ D ++N T + LA N +++ L+ N +
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRT---PLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 456 YQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
G TPL + A G + V +LL GAD K K+GRT L L + EV +++
Sbjct: 66 KN----GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
G TPL + A G + V +LL GAD K K+GRT L L + EV +++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 394 ILKSAESNHLDSASLIVPN-EDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPN 452
+L++A + D +++ N D T++N T + LA +N + +++ L+ N
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLT---PLHLAAANGQLEIVEVLLKNGADVN 66
Query: 453 VYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQ 512
+ G+TPL + A G + V +LL GAD + G T L L Q E+ +
Sbjct: 67 ASDS----AGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVE 122
Query: 513 IIKKH 517
++ KH
Sbjct: 123 VLLKH 127
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 438 FDMLLELVS--LEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDG 495
+D LE+V L+ +V Y G TPL + A G++ V +LL GAD + G
Sbjct: 81 YDGHLEIVEVLLKHGADVNAYDRA--GWTPLHLAALSGQLEIVEVLLKHGADVNAQDALG 138
Query: 496 RTALQLGEQENQPEVAQIIK 515
TA + + Q ++A+I++
Sbjct: 139 LTAFDISINQGQEDLAEILQ 158
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
G TPL + A G + V +LL GAD K K+GRT L L + EV +++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
G TPL + A G + V +LL GAD K K+GRT L L + EV +++
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
G TPL A G +V LLS GAD ++KDG T L L + E+ +++
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
G TPL + A G V +LL+ GAD ++KDG T L ++ E+ +++
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|1MSZ|A Chain A, Solution Structure Of The R3h Domain From Human Smubp-2
pdb|2LRR|A Chain A, Solution Structure Of The R3h Domain From Human Smubp-2
In Complex With 2'-Deoxyguanosine-5'-Monophosphate
Length = 86
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 39 FLASKDEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCK 87
F+ASK F +L++ +R VH++ ++ G+ SSG GK+R ++V K
Sbjct: 28 FMASKKMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSK 76
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 38.1 bits (87), Expect = 0.030, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G+TPL + A +G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 113 GITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G TPL + A G + V +LL GAD K +G T L L E+ +++ K+
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 38.1 bits (87), Expect = 0.033, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQ-IIKKHMEN 520
G TPL A G V +L+S GAD K DGRT L + EV + +I K +
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 521 ALSDSMKQQLLDKYLATVNPELIDLV 546
SDS + LD N E++ L+
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G TPL A G V +L+S GAD DGRT L L + EV ++++K
Sbjct: 103 GRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 34.3 bits (77), Expect = 0.44, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
G TPL A G V +L+S GAD K DGRT L + EV +++
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 89
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 37.7 bits (86), Expect = 0.036, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
GLTPL + A +G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 113 GLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G TPL + A G + V +LL GAD + G T L L E+ +++ KH
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 458 HTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
H G TPL + A G V +LL GAD + DG T L L E+ +++ K+
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Score = 30.8 bits (68), Expect = 5.3, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 466 LMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
L+ A G+ +V +L++ GAD G T L L PE+ +++ KH
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH 69
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 37.4 bits (85), Expect = 0.049, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 394 ILKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNV 453
+L++A + D +++ N ++ E+K L + LA ND +++ L+ N
Sbjct: 18 LLEAARAGQDDEVRILMAN-GADVNAEDKVGL-TPLHLAAMNDHLEIVEVLLKNGADVNA 75
Query: 454 YNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQI 513
+ G TPL ++A G + V +LL GAD + K G+TA + ++A+I
Sbjct: 76 ID----AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 514 IKK 516
++K
Sbjct: 132 LQK 134
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 37.4 bits (85), Expect = 0.051, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 429 ISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADC 488
+ LA N +++ L+ N +Y+ G TPL + A G + V +LL GAD
Sbjct: 84 LHLAADNGHLEIVEVLLKHGADVNAKDYE----GFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 489 QLKAKDGRTALQLGEQENQPEVAQIIKK 516
+ K G+TA + ++A+I++K
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G TPL + A G + V +LL GAD K +G T L L + E+ +++ K+
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G TPL + A G + V +LL GAD G T L L E+ +++ KH
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 452 NVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVA 511
N +YQ G TPL + A G + V +LL GAD + K G+TA + ++A
Sbjct: 107 NAMDYQ----GYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 512 QIIKK 516
+I++K
Sbjct: 163 EILQK 167
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 461 TGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
+G TPL + A +G + V +LL GAD G T L L ++ E+ +++ K+
Sbjct: 79 SGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G+TPL ++ G + + +LL AD K G T L L E+ +++ K+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 428 AISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGAD 487
A++ + D+ + +L+L L G+ N Q G T LM+ GRV V LL+ AD
Sbjct: 153 ALATLKTQDDIETVLQLFRL-GNINAKASQ---AGQTALMLAVSHGRVDVVKALLACEAD 208
Query: 488 CQLKAKDGRTALQLGEQENQPEVAQII 514
++ DG TAL + E+A ++
Sbjct: 209 VNVQDDDGSTALMCACEHGHKEIAGLL 235
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 428 AISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSL-GA 486
A+ LA S+ D++ L++ E NV + G T LM G +LL++
Sbjct: 186 ALMLAVSHGRVDVVKALLACEADVNVQDDD----GSTALMCACEHGHKEIAGLLLAVPSC 241
Query: 487 DCQLKAKDGRTALQLGEQENQPEVAQIIKKHM 518
D L +DG TAL + Q E+A ++ M
Sbjct: 242 DISLTDRDGSTALMVALDAGQSEIASMLYSRM 273
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 432 AWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLK 491
A N++ D++ +L LEG NV N+Q G TPL R V +LL GAD L+
Sbjct: 12 AVQNEDVDLVQQL--LEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 492 AKDGRTALQLG 502
K+G T L
Sbjct: 69 KKNGATPFLLA 79
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A +G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 113 GFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G+TPL + A +G + V +LL GAD G T L L + E+ +++ K+
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 460 LTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
TG TPL + A G + V +LL GAD K G T L L + E+ +++ K+
Sbjct: 45 FTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN 102
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 414 DPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKG 473
DP + + + + A+SLA + D++ L+ + N+Y++ G TPL+
Sbjct: 61 DPHILAKERES---ALSLASTGGYTDIVGLLLERDVDINIYDW----NGGTPLLYAVHGN 113
Query: 474 RVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHM 518
V V LL+ GAD +A G T + L +V Q+I+ H+
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQL 501
G TPL+ + G + V LL GAD + AK+ +AL L
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSL 75
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 191 SSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATS 250
+S K+ + + ++ +I G G GKTT V + +L+ + + K++C P I+ +
Sbjct: 192 TSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV---KQGLKVLCCAPSNIAVDN 248
Query: 251 VAERISVERGENIGDNIGYKIRLESKGGKHS 281
+ ER+++ + + +G+ RL +HS
Sbjct: 249 LVERLALCKQRIL--RLGHPARLLESIQQHS 277
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 113 GFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 461 TGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
+G TPL + A KG + V +LL GAD K G T L L E+ +++ K+
Sbjct: 46 SGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKN 102
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 191 SSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATS 250
+S K+ + + ++ +I G G GKTT V + +L+ + + K++C P I+ +
Sbjct: 192 TSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV---KQGLKVLCCAPSNIAVDN 248
Query: 251 VAERISVERGENIGDNIGYKIRLESKGGKHS 281
+ ER+++ + + +G+ RL +HS
Sbjct: 249 LVERLALCKQRIL--RLGHPARLLESIQQHS 277
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G+TPL + A +G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
GLTPL + A G + V +LL GAD + G T L L E+ +++ KH
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 414 DPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKG 473
DP + + + + A+SLA + D++ L+ + N+Y++ G TPL+
Sbjct: 61 DPHILAKERES---ALSLASTGGYTDIVGLLLERDVDINIYDW----NGGTPLLYAVRGN 113
Query: 474 RVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHM 518
V V LL+ GAD +A G T + L +V Q+I+ H+
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQL 501
G TPL+ + G + V LL GAD + AK+ +AL L
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSL 75
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 441 LLELVSLEGSP-NVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTAL 499
+LE + L+G+ N + H +TPL+ +G V V +LLS GAD +K DG TAL
Sbjct: 50 ILEFLLLKGADINAPDKHH----ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Query: 500 QLGEQE 505
+ + +
Sbjct: 106 EATDNQ 111
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 411 PNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLA 470
P+ LT E K DE + A S +E ++ L L NV + TPL + A
Sbjct: 13 PSAKAVLTGEYKK--DELLEAARSGNEEKLMALLTPL----NVNCHASDGRKSTPLHLAA 66
Query: 471 GKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G RV V +LL GAD K K G L EV +++ KH
Sbjct: 67 GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G TPL + A G + V +LL GAD GRT L L + E+ +++ KH
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKH 102
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 461 TGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
TG TPL + A + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 79 TGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 411 PNEDPELTEENKSTLDEAISL--AWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMV 468
P E P + ++ +++ L A N++ D++ +L LEG NV N+Q G TPL
Sbjct: 9 PQEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQL--LEGGANV-NFQEEEGGWTPLHN 65
Query: 469 LAGKGRVGDVCMLLSLGADCQLKAKDGRT 497
R V +LL GAD L+ K+G T
Sbjct: 66 AVQMSREDIVELLLRHGADPVLRKKNGAT 94
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G+TPL + A +G + V +LL GAD +G T L L E+ +++ KH
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 113 GFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 35.0 bits (79), Expect = 0.25, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A +G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 466 LMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
L+ A G+ +V +L++ GAD K KDG T L L +E E+ +++ K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 408 LIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLM 467
L+ DP+L + + + A+SLA S D++ L+ N Y++ G TPL+
Sbjct: 71 LLQNGADPQLLGKGRES---ALSLACSKGYTDIVKMLLDCGVDVNEYDW----NGGTPLL 123
Query: 468 VLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHM 518
V V MLL GAD ++ G ++ L V Q+I+ H+
Sbjct: 124 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 174
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
G TPLM A G++ V LL GAD QL K +AL L + ++ +++
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 408 LIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLM 467
L+ DP+L + + + A+SLA S D++ L+ N Y++ G TPL+
Sbjct: 53 LLQNGADPQLLGKGRES---ALSLACSKGYTDIVKMLLDCGVDVNEYDW----NGGTPLL 105
Query: 468 VLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHM 518
V V MLL GAD ++ G ++ L V Q+I+ H+
Sbjct: 106 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 156
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
G TPLM A G++ V LL GAD QL K +AL L + ++ +++
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 408 LIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLM 467
L+ DP+L + + + A+SLA S D++ L+ N Y++ G TPL+
Sbjct: 55 LLQNGADPQLLGKGRES---ALSLACSKGYTDIVKMLLDCGVDVNEYDW----NGGTPLL 107
Query: 468 VLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHM 518
V V MLL GAD ++ G ++ L V Q+I+ H+
Sbjct: 108 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514
G TPLM A G++ V LL GAD QL K +AL L + ++ +++
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G+TPL + A G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 113 GMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G TPL + A G + V +LL GAD DG T L L + E+ +++ KH
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G+TPL + A +G + V +LL GAD + GRT L L E+ +++ ++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEY 102
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G+TPL + A +G + V +LL GAD GRT L L E+ +++ ++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEY 102
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 25/54 (46%)
Query: 464 TPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
TPL AG RV V LL GAD K K G L EVA+++ KH
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 99
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 25/54 (46%)
Query: 464 TPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
TPL AG RV V LL GAD K K G L EVA+++ KH
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 34.3 bits (77), Expect = 0.50, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 441 LLELVSLEGSP-NVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTAL 499
+LE + L+G+ N + H +TPL+ +G V V +LLS GAD +K DG TA
Sbjct: 55 ILEFLLLKGADINAPDKHH----ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
Query: 500 QLGEQE 505
+ + +
Sbjct: 111 EATDNQ 116
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G+TPL + A +G + V +LL GAD GRT L L E+ +++ ++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEY 102
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 25/54 (46%)
Query: 464 TPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
TPL AG RV V LL GAD K K G L EVA+++ KH
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 101
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 33.5 bits (75), Expect = 0.75, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G TPL + A G + V +LL GAD K G T L L E+ +++ KH
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 461 TGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIK 515
TG+TPL + A G + V +LL GAD + K G+TA + ++A+I++
Sbjct: 100 TGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 30.0 bits (66), Expect = 8.1, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 456 YQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIK 515
Y H G TPL + A G + V +LL GAD +G T L L E+ +++
Sbjct: 31 YDHY--GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 516 KH 517
K+
Sbjct: 89 KY 90
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 33.5 bits (75), Expect = 0.76, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G TPL + A G + V +LL GAD G T L L E E+ +++ K+
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Score = 33.1 bits (74), Expect = 0.95, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 460 LTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQ 512
+TG TPL + A +G + V +LL GAD + K G+TA + ++A+
Sbjct: 111 MTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 461 TGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
TGLTPL + A G + V +LL GAD G T L L E+ +++ K+
Sbjct: 46 TGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKY 102
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIK 515
G TPL + A G + V +LL GAD + K G+TA + ++A+I++
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 92
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 458 HTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
H G TPL + A G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 76 HDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
G TPL + A + V +LL GAD DG T L L E+ +++ KH
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIK 515
G TPL + A G + V +LL GAD + K G+TA + ++A+I++
Sbjct: 113 GSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 460 LTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
+G TPL + A +G + V +LL GAD G T L L E+ +++ K+
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIK 515
G TPL + A G + V +LL GAD + K G+TA + ++A+I++
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 461 TGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
+GLTPL + A G + V +LL GAD G T L L E+ +++ KH
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 464 TPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
TPL + A +G V +LL GAD K TAL + N EV +++ K+
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 27/195 (13%)
Query: 176 ANLRQIVEERSK-LPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGE 234
A +++ E R+ + F+D S +D + VL+S T GKT + + + +K
Sbjct: 170 AEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ- 228
Query: 235 TCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRL 294
+++ T P + + + E G ++G G I + G +V T +LR
Sbjct: 229 --RVIYTSPIKALSNQKYRELLAEFG-DVGLMTG-DITINPDAG---CLVMTTE--ILRS 279
Query: 295 LVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE-RDRYSDFMLAIIRDMLPSYPHLRLI 353
++ +G ++E + +I DE+H RD+ + +LP +R +
Sbjct: 280 MLYRGSEVMREVA------------WVIFDEVHYMRDKERGVVWEETIILLPD--KVRYV 325
Query: 354 LMSATL-DADRFSQY 367
+SAT+ +A F+++
Sbjct: 326 FLSATIPNAMEFAEW 340
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 460 LTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
+ G TPL + A G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 438 FDMLLELVS--LEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDG 495
F+ LE+V L+ +V H G+TPL + A G + V +LL GAD +G
Sbjct: 56 FNGHLEIVEVLLKNGADVNAVDHA--GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG 113
Query: 496 RTALQLGEQENQPEVAQIIKKH 517
T L L E+ +++ K+
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKN 135
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENA 521
GLTPL + G + V +LL GAD G T L L E+A+++ KH +
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Query: 522 -LSDSMKQQLLDKYLATVNPELIDLV 546
D + D + N +L +++
Sbjct: 107 NAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A G + +LL GAD + K G+TA + ++A+I++K
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 27/195 (13%)
Query: 176 ANLRQIVEERSK-LPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGE 234
A +++ E R+ + F+D S +D + VL+S T GKT + + + +K
Sbjct: 72 AEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ- 130
Query: 235 TCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRL 294
+++ T P + + + E G ++G G I + G +V T +LR
Sbjct: 131 --RVIYTSPIKALSNQKYRELLAEFG-DVGLMTG-DITINPDAG---CLVMTTE--ILRS 181
Query: 295 LVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE-RDRYSDFMLAIIRDMLPSYPHLRLI 353
++ +G ++E + +I DE+H RD+ + +LP +R +
Sbjct: 182 MLYRGSEVMREVA------------WVIFDEVHYMRDKERGVVWEETIILLPD--KVRYV 227
Query: 354 LMSATL-DADRFSQY 367
+SAT+ +A F+++
Sbjct: 228 FLSATIPNAMEFAEW 242
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516
G TPL + A G + V +LL GAD + K G+TA + ++A+I++K
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 461 TGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517
+GLTPL + A G + V +LL GAD G T L L E+ +++ KH
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAK-DGRTALQLGEQENQPEVAQIIKK 516
G T L + + G +G V +L+SLGAD + +GRTAL L P++ ++ K
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQ 504
GLT L + AG R V L+ LGAD +++ + G TAL+L +
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 35/126 (27%)
Query: 393 SILKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSND-EFDMLLELVSLEGSP 451
+++ +AE H+D+ L L E+ + +D + ND + L+E V L
Sbjct: 109 ALIPAAEKGHIDNVKL--------LLEDGREDID------FQNDFGYTALIEAVGLREGN 154
Query: 452 NVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVA 511
+Y V +L+ GAD +K GRTA+ Q+ E++
Sbjct: 155 QLYQ--------------------DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEIS 194
Query: 512 QIIKKH 517
+I+ ++
Sbjct: 195 KILAQY 200
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 394 ILKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNV 453
++ + E H+D L++ +N +E I L W+ F +++ + +
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDN----EENICLHWA--AFSGCVDIAEILLAAKC 168
Query: 454 YNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQI 513
+ + G +PL + A + R V + LS +D LK K+G T LQ +Q A
Sbjct: 169 DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSAL- 227
Query: 514 IKKHMENALSDS 525
M AL DS
Sbjct: 228 ---QMSKALQDS 236
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAK-DGRTALQLGEQENQPEVAQIIKK 516
G T L + + G +G V +L+SLGAD + +GRTAL L P++ ++ K
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQ 504
GLT L + AG R V L+ LGAD +++ + G TAL+L +
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 447 LEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTA 498
LE NV + L G TPL+V + GR V LL LGAD + G TA
Sbjct: 121 LEHGANVND--RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
>pdb|2P0L|A Chain A, Crystal Structure Of A Lipoate-Protein Ligase A
Length = 288
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 183 EERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQ 242
++ ++LP+S FKD +T D+ + I E + + Q ++ HIW +T I+
Sbjct: 6 QDLAQLPVSIFKDYVTDAQDAEK-PFIWTEVFLREINRSNQEIILHIWPXTKTV-ILGXL 63
Query: 243 PRRISATSVAERISVERG 260
R + +A++ + RG
Sbjct: 64 DRELPHLELAKKEIISRG 81
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 484 LGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELI 543
+G LK G+ LG ++ PE +IIK + L + + L D A + P+ +
Sbjct: 114 IGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYV 173
Query: 544 D 544
D
Sbjct: 174 D 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,141,370
Number of Sequences: 62578
Number of extensions: 1382965
Number of successful extensions: 3806
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3607
Number of HSP's gapped (non-prelim): 200
length of query: 1225
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1115
effective length of database: 8,089,757
effective search space: 9020079055
effective search space used: 9020079055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)