Query 000916
Match_columns 1225
No_of_seqs 538 out of 2974
Neff 6.5
Searched_HMMs 46136
Date Tue Apr 2 00:45:21 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0920 ATP-dependent RNA heli 100.0 1E-168 3E-173 1540.8 63.7 849 53-1107 60-921 (924)
2 KOG0922 DEAH-box RNA helicase 100.0 4E-151 9E-156 1321.7 52.1 625 178-994 40-666 (674)
3 KOG0923 mRNA splicing factor A 100.0 1E-146 3E-151 1262.4 46.1 625 178-994 254-882 (902)
4 KOG0924 mRNA splicing factor A 100.0 9E-146 2E-150 1254.0 44.4 623 179-994 346-972 (1042)
5 KOG0925 mRNA splicing factor A 100.0 6E-137 1E-141 1150.2 48.3 627 173-994 31-666 (699)
6 PRK11131 ATP-dependent RNA hel 100.0 8E-127 2E-131 1213.4 62.0 622 182-994 67-696 (1294)
7 COG1643 HrpA HrpA-like helicas 100.0 5E-126 1E-130 1171.9 47.1 638 175-991 36-707 (845)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 6E-123 1E-127 1182.7 63.0 622 181-994 59-686 (1283)
9 KOG0926 DEAH-box RNA helicase 100.0 1E-122 3E-127 1077.8 42.8 637 177-996 244-1024(1172)
10 KOG0921 Dosage compensation co 100.0 8E-114 2E-118 1012.2 46.8 767 171-1105 360-1138(1282)
11 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-97 2E-102 934.7 56.6 572 188-992 1-575 (819)
12 PRK11664 ATP-dependent RNA hel 100.0 2.9E-96 6E-101 923.8 56.0 562 187-993 3-569 (812)
13 PHA02653 RNA helicase NPH-II; 100.0 3.3E-65 7.1E-70 628.3 36.2 399 193-786 168-595 (675)
14 KOG0921 Dosage compensation co 100.0 1.4E-42 3.1E-47 410.7 -1.5 568 180-886 397-968 (1282)
15 PRK01172 ski2-like helicase; P 100.0 3.2E-35 7E-40 370.4 45.6 436 188-798 21-505 (674)
16 PRK11776 ATP-dependent RNA hel 100.0 3.5E-32 7.5E-37 328.8 31.7 311 190-694 27-351 (460)
17 PRK02362 ski2-like helicase; P 100.0 9E-31 1.9E-35 332.7 42.0 438 189-799 23-530 (737)
18 PRK11634 ATP-dependent RNA hel 100.0 2.7E-30 5.8E-35 320.4 36.9 316 186-693 25-353 (629)
19 PRK11192 ATP-dependent RNA hel 100.0 2.3E-30 4.9E-35 310.8 33.9 330 178-695 12-355 (434)
20 PTZ00110 helicase; Provisional 100.0 9.5E-31 2.1E-35 321.2 31.1 317 190-693 153-485 (545)
21 PRK04837 ATP-dependent RNA hel 100.0 1.6E-30 3.4E-35 311.1 30.9 309 191-693 32-363 (423)
22 PRK10590 ATP-dependent RNA hel 100.0 5.3E-30 1.1E-34 309.3 31.9 314 190-693 24-353 (456)
23 KOG0330 ATP-dependent RNA heli 100.0 6.2E-31 1.3E-35 292.0 21.0 317 187-692 82-407 (476)
24 PRK00254 ski2-like helicase; P 100.0 1E-29 2.2E-34 322.3 32.1 448 178-800 12-523 (720)
25 PRK01297 ATP-dependent RNA hel 100.0 2.1E-29 4.5E-34 305.8 33.2 327 176-693 96-443 (475)
26 PRK04537 ATP-dependent RNA hel 100.0 2.1E-29 4.5E-34 310.5 31.0 311 190-693 32-365 (572)
27 PTZ00424 helicase 45; Provisio 100.0 2E-29 4.3E-34 299.3 29.1 314 190-695 51-377 (401)
28 KOG0331 ATP-dependent RNA heli 100.0 1.7E-29 3.7E-34 297.7 27.5 316 194-694 118-450 (519)
29 PLN00206 DEAD-box ATP-dependen 100.0 3.4E-29 7.3E-34 306.4 31.0 314 190-694 144-477 (518)
30 COG0513 SrmB Superfamily II DN 100.0 3.6E-28 7.8E-33 296.1 30.6 310 190-691 52-379 (513)
31 TIGR03817 DECH_helic helicase/ 100.0 5.4E-28 1.2E-32 305.2 27.7 340 181-690 28-384 (742)
32 PRK13767 ATP-dependent helicas 99.9 3.3E-26 7.2E-31 294.2 31.0 395 190-754 33-477 (876)
33 PRK11057 ATP-dependent DNA hel 99.9 1.8E-26 3.8E-31 287.2 27.4 299 191-694 27-345 (607)
34 TIGR00614 recQ_fam ATP-depende 99.9 3.6E-26 7.7E-31 277.0 28.8 300 192-694 14-335 (470)
35 KOG0345 ATP-dependent RNA heli 99.9 1.1E-25 2.3E-30 255.4 23.3 336 192-710 31-385 (567)
36 TIGR01587 cas3_core CRISPR-ass 99.9 7.6E-26 1.6E-30 264.9 22.8 306 206-692 1-336 (358)
37 KOG0342 ATP-dependent RNA heli 99.9 2.1E-25 4.5E-30 254.9 22.0 320 190-693 105-438 (543)
38 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.6E-24 5.7E-29 267.8 30.9 349 190-721 16-421 (844)
39 KOG0333 U5 snRNP-like RNA heli 99.9 6.4E-25 1.4E-29 251.2 22.6 321 179-693 258-625 (673)
40 PLN03137 ATP-dependent DNA hel 99.9 3.8E-24 8.2E-29 269.4 27.0 109 561-694 680-789 (1195)
41 PRK09751 putative ATP-dependen 99.9 4.5E-24 9.7E-29 278.9 27.9 310 209-683 1-374 (1490)
42 TIGR01389 recQ ATP-dependent D 99.9 5.2E-24 1.1E-28 265.1 27.1 109 561-694 224-333 (591)
43 PRK10917 ATP-dependent DNA hel 99.9 8.5E-24 1.8E-28 266.0 28.7 305 182-690 252-587 (681)
44 TIGR00643 recG ATP-dependent D 99.9 1.6E-23 3.4E-28 261.9 28.3 309 181-690 225-564 (630)
45 PRK10689 transcription-repair 99.9 2.6E-23 5.7E-28 270.6 29.9 303 183-690 592-917 (1147)
46 TIGR00580 mfd transcription-re 99.9 5.1E-23 1.1E-27 262.8 32.0 297 190-691 452-769 (926)
47 KOG0338 ATP-dependent RNA heli 99.9 3.8E-24 8.3E-29 243.9 18.8 313 194-692 208-533 (691)
48 KOG0343 RNA Helicase [RNA proc 99.9 1.5E-23 3.3E-28 240.8 21.9 316 193-695 96-425 (758)
49 KOG0348 ATP-dependent RNA heli 99.9 2.4E-23 5.3E-28 238.6 22.8 365 189-705 160-569 (708)
50 KOG0328 Predicted ATP-dependen 99.9 2.3E-23 5.1E-28 223.2 20.7 309 195-694 55-375 (400)
51 KOG0339 ATP-dependent RNA heli 99.9 2.5E-23 5.4E-28 236.8 21.4 314 194-694 250-577 (731)
52 KOG0340 ATP-dependent RNA heli 99.9 4.8E-23 1E-27 227.2 22.0 325 185-691 28-360 (442)
53 KOG0335 ATP-dependent RNA heli 99.9 2.1E-23 4.5E-28 242.7 19.2 311 194-690 101-442 (482)
54 COG1111 MPH1 ERCC4-like helica 99.9 4.6E-22 9.9E-27 229.5 29.2 426 192-692 18-481 (542)
55 COG1201 Lhr Lhr-like helicases 99.9 2.9E-22 6.3E-27 248.4 29.0 386 176-751 10-438 (814)
56 TIGR03158 cas3_cyano CRISPR-as 99.9 4.8E-22 1E-26 232.8 27.2 87 560-678 271-357 (357)
57 COG1204 Superfamily II helicas 99.9 9.2E-22 2E-26 246.9 28.4 423 195-786 38-526 (766)
58 KOG0332 ATP-dependent RNA heli 99.9 2.3E-22 4.9E-27 222.9 19.3 311 193-691 116-442 (477)
59 KOG0336 ATP-dependent RNA heli 99.9 2E-22 4.4E-27 224.4 18.4 316 185-695 241-575 (629)
60 KOG0347 RNA helicase [RNA proc 99.9 9.1E-23 2E-27 234.5 14.4 357 189-720 204-585 (731)
61 COG1202 Superfamily II helicas 99.9 8E-21 1.7E-25 219.3 28.7 434 175-801 202-679 (830)
62 PRK13766 Hef nuclease; Provisi 99.9 4.7E-20 1E-24 236.8 33.9 421 188-691 14-478 (773)
63 KOG0354 DEAD-box like helicase 99.9 3E-20 6.5E-25 225.6 28.9 429 186-691 59-528 (746)
64 KOG0326 ATP-dependent RNA heli 99.9 2.6E-21 5.6E-26 210.4 15.4 308 194-692 112-429 (459)
65 PHA02558 uvsW UvsW helicase; P 99.8 2.2E-19 4.7E-24 219.4 25.5 317 188-684 113-443 (501)
66 COG1205 Distinct helicase fami 99.8 1.4E-19 3E-24 230.2 22.7 327 183-681 64-410 (851)
67 PRK09694 helicase Cas3; Provis 99.8 5.2E-19 1.1E-23 224.3 27.2 97 560-681 559-663 (878)
68 KOG0350 DEAD-box ATP-dependent 99.8 2.4E-19 5.2E-24 205.1 21.0 307 204-692 183-540 (620)
69 PRK09401 reverse gyrase; Revie 99.8 1.2E-18 2.6E-23 227.8 27.7 130 180-328 71-212 (1176)
70 KOG0334 RNA helicase [RNA proc 99.8 3E-19 6.5E-24 220.5 19.3 319 189-691 387-719 (997)
71 KOG0346 RNA helicase [RNA proc 99.8 1.3E-18 2.9E-23 196.4 17.0 304 193-692 45-410 (569)
72 PRK14701 reverse gyrase; Provi 99.8 1.2E-17 2.5E-22 222.9 27.4 114 562-693 331-457 (1638)
73 KOG0341 DEAD-box protein abstr 99.8 4.1E-19 9E-24 197.0 10.8 303 198-692 201-528 (610)
74 TIGR01054 rgy reverse gyrase. 99.8 2.5E-17 5.5E-22 215.8 28.2 78 562-650 327-412 (1171)
75 KOG0327 Translation initiation 99.8 5.9E-18 1.3E-22 190.1 17.0 315 188-696 48-374 (397)
76 KOG0344 ATP-dependent RNA heli 99.8 4.3E-18 9.3E-23 199.6 16.3 321 184-692 156-495 (593)
77 TIGR03714 secA2 accessory Sec 99.8 3.6E-16 7.8E-21 193.9 33.1 104 560-691 423-536 (762)
78 PF07717 OB_NTP_bind: Oligonuc 99.8 1.3E-18 2.9E-23 170.9 9.2 107 876-993 1-114 (114)
79 PF04408 HA2: Helicase associa 99.7 1.5E-18 3.2E-23 167.4 7.7 96 744-839 1-102 (102)
80 PRK09200 preprotein translocas 99.7 2.2E-16 4.7E-21 197.4 27.8 106 560-692 427-541 (790)
81 KOG4284 DEAD box protein [Tran 99.7 2.4E-17 5.2E-22 192.5 17.2 320 188-692 47-379 (980)
82 PRK05580 primosome assembly pr 99.7 3.3E-16 7.1E-21 197.1 25.3 155 188-368 143-313 (679)
83 COG0514 RecQ Superfamily II DN 99.7 4.1E-16 8.8E-21 188.1 22.8 111 559-694 228-339 (590)
84 COG4581 Superfamily II RNA hel 99.7 5.2E-16 1.1E-20 195.5 22.5 180 186-390 116-307 (1041)
85 TIGR00603 rad25 DNA repair hel 99.7 2.1E-15 4.5E-20 187.1 26.1 104 560-692 495-607 (732)
86 PRK12898 secA preprotein trans 99.7 9.6E-15 2.1E-19 179.5 30.9 104 561-691 473-585 (656)
87 KOG0952 DNA/RNA helicase MER3/ 99.7 5.3E-15 1.1E-19 181.6 26.7 435 199-800 121-638 (1230)
88 TIGR00963 secA preprotein tran 99.7 7.2E-15 1.6E-19 181.4 27.3 106 560-692 404-517 (745)
89 KOG0948 Nuclear exosomal RNA h 99.7 9.6E-16 2.1E-20 181.9 17.8 173 190-386 130-309 (1041)
90 TIGR00595 priA primosomal prot 99.7 9.5E-16 2.1E-20 186.7 16.8 108 563-686 263-375 (505)
91 KOG0337 ATP-dependent RNA heli 99.6 2.4E-15 5.1E-20 169.8 17.3 306 194-691 48-367 (529)
92 COG4098 comFA Superfamily II D 99.6 2.2E-14 4.8E-19 158.8 24.0 296 195-690 107-415 (441)
93 KOG0947 Cytoplasmic exosomal R 99.6 1.2E-14 2.6E-19 176.5 20.7 169 188-387 296-478 (1248)
94 smart00847 HA2 Helicase associ 99.6 8E-16 1.7E-20 145.3 6.7 90 744-839 1-92 (92)
95 PRK11448 hsdR type I restricti 99.6 2.3E-13 5E-18 177.8 31.1 393 189-717 413-845 (1123)
96 PF00270 DEAD: DEAD/DEAH box h 99.6 2.5E-14 5.4E-19 148.8 17.7 153 192-360 2-163 (169)
97 COG1200 RecG RecG-like helicas 99.6 1.2E-13 2.7E-18 166.4 20.6 305 181-691 252-590 (677)
98 COG1203 CRISPR-associated heli 99.5 1.9E-13 4E-18 173.9 20.6 101 560-688 439-546 (733)
99 cd00268 DEADc DEAD-box helicas 99.5 2.6E-13 5.7E-18 146.1 18.7 163 190-369 22-197 (203)
100 PRK04914 ATP-dependent helicas 99.5 2.3E-12 5E-17 165.2 27.8 109 559-691 491-604 (956)
101 KOG0951 RNA helicase BRR2, DEA 99.5 2.6E-12 5.6E-17 159.9 23.8 407 201-775 322-820 (1674)
102 cd06007 R3H_DEXH_helicase R3H 99.5 5.8E-14 1.2E-18 120.7 6.3 59 29-87 1-59 (59)
103 COG1061 SSL2 DNA or RNA helica 99.5 3.6E-12 7.7E-17 153.7 23.7 97 560-682 282-378 (442)
104 KOG0352 ATP-dependent DNA heli 99.5 1.3E-12 2.8E-17 147.6 17.4 111 560-695 254-365 (641)
105 PRK13104 secA preprotein trans 99.5 1E-11 2.3E-16 155.7 27.2 134 184-328 75-213 (896)
106 COG1197 Mfd Transcription-repa 99.4 2E-11 4.3E-16 154.8 25.1 285 201-691 610-912 (1139)
107 PRK12906 secA preprotein trans 99.4 1.7E-11 3.6E-16 153.1 24.0 106 560-692 439-553 (796)
108 smart00487 DEXDc DEAD-like hel 99.4 7.6E-12 1.6E-16 131.5 17.3 165 188-369 7-182 (201)
109 cd00046 DEXDc DEAD-like helica 99.4 6.2E-12 1.3E-16 124.4 14.8 138 205-359 1-144 (144)
110 KOG0950 DNA polymerase theta/e 99.3 1.5E-11 3.2E-16 151.5 17.5 87 593-693 523-612 (1008)
111 cd02640 R3H_NRF R3H domain of 99.3 1.8E-12 4E-17 112.0 6.6 58 30-87 2-60 (60)
112 KOG0351 ATP-dependent DNA heli 99.3 2.5E-11 5.4E-16 154.6 19.1 116 555-695 479-595 (941)
113 PRK12904 preprotein translocas 99.3 1.6E-10 3.5E-15 145.1 25.2 133 184-328 74-212 (830)
114 KOG0329 ATP-dependent RNA heli 99.2 6.4E-11 1.4E-15 126.6 12.5 157 187-362 63-230 (387)
115 cd02641 R3H_Smubp-2_like R3H d 99.2 2.6E-11 5.7E-16 105.2 6.9 58 30-87 2-60 (60)
116 PF07652 Flavi_DEAD: Flaviviru 99.2 1E-10 2.3E-15 117.9 11.9 133 202-359 2-136 (148)
117 KOG0349 Putative DEAD-box RNA 99.2 3.2E-10 6.9E-15 128.5 15.0 107 562-690 506-613 (725)
118 PRK13107 preprotein translocas 99.2 3.3E-09 7.2E-14 133.2 25.2 133 184-327 75-212 (908)
119 KOG0353 ATP-dependent DNA heli 99.1 1.7E-09 3.8E-14 120.7 18.5 98 548-652 304-403 (695)
120 cd00079 HELICc Helicase superf 99.1 2.1E-10 4.6E-15 113.7 10.3 104 560-688 27-131 (131)
121 cd02646 R3H_G-patch R3H domain 99.1 3.4E-10 7.5E-15 97.8 7.1 57 30-87 2-58 (58)
122 PLN03142 Probable chromatin-re 99.0 1.2E-07 2.6E-12 122.9 30.1 120 547-693 475-600 (1033)
123 TIGR02562 cas3_yersinia CRISPR 99.0 4.7E-08 1E-12 124.0 24.7 98 565-684 760-883 (1110)
124 PF00271 Helicase_C: Helicase 99.0 5.3E-10 1.2E-14 102.0 5.1 71 593-681 8-78 (78)
125 TIGR00631 uvrb excinuclease AB 99.0 1.9E-09 4.2E-14 135.1 11.3 123 549-691 429-552 (655)
126 TIGR01407 dinG_rel DnaQ family 98.9 1.9E-07 4.1E-12 121.7 28.2 158 551-717 665-846 (850)
127 PRK05298 excinuclease ABC subu 98.9 4.4E-09 9.6E-14 132.6 12.2 112 560-691 445-556 (652)
128 COG4096 HsdR Type I site-speci 98.9 1.1E-07 2.5E-12 117.0 23.0 151 547-719 408-575 (875)
129 KOG0949 Predicted helicase, DE 98.9 1.5E-07 3.2E-12 116.2 23.4 163 188-369 510-682 (1330)
130 smart00490 HELICc helicase sup 98.9 2.4E-09 5.3E-14 97.1 6.3 70 593-680 12-81 (82)
131 PF04851 ResIII: Type III rest 98.9 8E-09 1.7E-13 108.4 9.6 156 189-359 3-182 (184)
132 TIGR00348 hsdR type I site-spe 98.8 2.6E-07 5.6E-12 117.1 23.6 139 204-359 263-402 (667)
133 KOG0953 Mitochondrial RNA heli 98.8 2.3E-07 5E-12 109.3 20.2 114 560-691 356-476 (700)
134 cd02639 R3H_RRM R3H domain of 98.8 8.7E-09 1.9E-13 89.1 5.0 52 36-87 8-60 (60)
135 COG1110 Reverse gyrase [DNA re 98.8 1.8E-06 3.8E-11 108.2 26.6 137 183-340 76-229 (1187)
136 PF01424 R3H: R3H domain; Int 98.6 6.5E-08 1.4E-12 85.1 7.1 60 27-88 4-63 (63)
137 PRK12899 secA preprotein trans 98.6 2.8E-07 6E-12 116.5 14.6 129 190-328 93-226 (970)
138 KOG4150 Predicted ATP-dependen 98.5 9.9E-07 2.1E-11 103.4 14.6 69 595-681 560-628 (1034)
139 smart00393 R3H Putative single 98.5 2.8E-07 6E-12 85.0 8.0 62 26-88 18-79 (79)
140 PRK07246 bifunctional ATP-depe 98.5 2.1E-05 4.6E-10 101.8 27.6 153 550-714 638-812 (820)
141 PRK13103 secA preprotein trans 98.4 1.1E-05 2.3E-10 102.4 21.1 131 184-328 75-213 (913)
142 PRK12326 preprotein translocas 98.4 3.6E-05 7.9E-10 95.6 24.9 128 185-327 72-208 (764)
143 COG1198 PriA Primosomal protei 98.4 3.6E-05 7.7E-10 97.0 23.2 167 188-380 197-381 (730)
144 cd06006 R3H_unknown_2 R3H doma 98.3 1.3E-06 2.7E-11 75.5 7.0 57 30-87 2-59 (59)
145 cd02325 R3H R3H domain. The na 98.3 1.2E-06 2.6E-11 75.1 6.9 57 30-87 2-59 (59)
146 PRK12900 secA preprotein trans 98.3 1.5E-06 3.3E-11 110.3 10.2 107 560-693 597-712 (1025)
147 PRK12903 secA preprotein trans 98.3 0.00012 2.5E-09 92.5 24.4 132 184-328 71-209 (925)
148 CHL00122 secA preprotein trans 98.2 9.2E-05 2E-09 93.8 21.7 126 185-328 70-207 (870)
149 PF13401 AAA_22: AAA domain; P 98.2 6.1E-06 1.3E-10 82.3 8.4 121 202-358 2-125 (131)
150 cd02642 R3H_encore_like R3H do 98.1 6.8E-06 1.5E-10 72.4 7.4 59 28-88 4-63 (63)
151 PF00448 SRP54: SRP54-type pro 98.1 1.4E-05 3.1E-10 86.4 10.7 126 205-363 2-129 (196)
152 KOG0385 Chromatin remodeling c 98.1 0.00053 1.1E-08 84.3 24.0 122 548-693 476-600 (971)
153 PRK12723 flagellar biosynthesi 97.8 0.00013 2.8E-09 86.6 12.5 129 204-369 174-307 (388)
154 PRK14722 flhF flagellar biosyn 97.8 0.00016 3.4E-09 85.3 13.0 126 201-363 134-261 (374)
155 cd02636 R3H_sperm-antigen R3H 97.8 4E-05 8.7E-10 66.0 5.9 57 31-88 3-61 (61)
156 KOG0951 RNA helicase BRR2, DEA 97.8 0.00058 1.2E-08 87.5 18.3 156 202-385 1157-1327(1674)
157 PRK12724 flagellar biosynthesi 97.8 0.00021 4.6E-09 84.9 13.0 131 203-371 222-359 (432)
158 PRK05703 flhF flagellar biosyn 97.7 0.00037 8E-09 84.1 14.5 131 203-370 220-356 (424)
159 PRK11889 flhF flagellar biosyn 97.7 0.00041 8.9E-09 81.6 14.1 132 204-370 241-376 (436)
160 PF13245 AAA_19: Part of AAA d 97.7 0.00011 2.4E-09 67.4 7.4 58 197-255 3-62 (76)
161 KOG0384 Chromodomain-helicase 97.7 0.0021 4.5E-08 82.8 20.5 142 547-717 687-834 (1373)
162 cd02643 R3H_NF-X1 R3H domain o 97.7 0.00013 2.9E-09 66.4 7.2 59 27-86 9-73 (74)
163 TIGR03117 cas_csf4 CRISPR-asso 97.6 0.0005 1.1E-08 86.1 14.3 59 194-253 6-64 (636)
164 PF02399 Herpes_ori_bp: Origin 97.6 0.00054 1.2E-08 86.1 14.4 144 202-369 47-202 (824)
165 PF05729 NACHT: NACHT domain 97.6 0.00035 7.5E-09 72.1 10.8 61 320-380 84-151 (166)
166 KOG0387 Transcription-coupled 97.6 0.0071 1.5E-07 75.1 23.2 111 561-692 546-658 (923)
167 KOG0390 DNA repair protein, SN 97.6 0.015 3.3E-07 73.7 26.5 105 566-691 599-706 (776)
168 cd02644 R3H_jag R3H domain fou 97.5 0.00027 5.8E-09 63.2 7.5 55 31-87 11-66 (67)
169 PF13604 AAA_30: AAA domain; P 97.5 0.0005 1.1E-08 74.5 10.1 123 192-356 4-128 (196)
170 PRK12726 flagellar biosynthesi 97.4 0.00093 2E-08 78.4 11.6 132 201-367 203-335 (407)
171 PRK14974 cell division protein 97.4 0.002 4.4E-08 75.2 14.1 134 204-369 140-276 (336)
172 PRK12727 flagellar biosynthesi 97.4 0.001 2.2E-08 81.1 11.5 126 201-363 347-473 (559)
173 COG1419 FlhF Flagellar GTP-bin 97.3 0.0039 8.5E-08 73.4 15.7 125 204-366 203-330 (407)
174 PRK14721 flhF flagellar biosyn 97.3 0.0019 4.2E-08 77.4 13.4 133 201-370 188-325 (420)
175 PF02562 PhoH: PhoH-like prote 97.3 0.00082 1.8E-08 73.1 8.7 55 189-244 4-58 (205)
176 TIGR01448 recD_rel helicase, p 97.3 0.0019 4.1E-08 83.0 13.3 132 185-356 319-450 (720)
177 cd00009 AAA The AAA+ (ATPases 97.3 0.0028 6E-08 63.0 11.8 50 194-246 7-58 (151)
178 PRK10875 recD exonuclease V su 97.3 0.0012 2.7E-08 82.8 11.1 144 192-356 155-299 (615)
179 cd02645 R3H_AAA R3H domain of 97.2 0.00097 2.1E-08 58.2 7.0 55 31-86 5-59 (60)
180 TIGR01447 recD exodeoxyribonuc 97.2 0.0024 5.3E-08 80.0 12.7 144 192-356 148-293 (586)
181 PRK14723 flhF flagellar biosyn 97.0 0.0043 9.3E-08 79.0 12.8 126 203-365 184-311 (767)
182 PF00176 SNF2_N: SNF2 family N 97.0 0.0075 1.6E-07 68.6 13.9 140 202-359 23-172 (299)
183 PRK10416 signal recognition pa 97.0 0.013 2.9E-07 68.2 15.2 128 203-362 113-247 (318)
184 PRK06731 flhF flagellar biosyn 97.0 0.0095 2.1E-07 67.7 13.6 133 203-370 74-210 (270)
185 PRK06995 flhF flagellar biosyn 96.9 0.0081 1.7E-07 73.3 13.7 131 202-370 254-390 (484)
186 PRK06526 transposase; Provisio 96.9 0.0033 7.1E-08 70.9 9.4 30 199-228 93-122 (254)
187 PF07517 SecA_DEAD: SecA DEAD- 96.9 0.0062 1.3E-07 68.9 10.9 130 185-327 71-207 (266)
188 PF13173 AAA_14: AAA domain 96.8 0.0041 8.9E-08 62.5 8.5 27 203-229 1-27 (128)
189 KOG1803 DNA helicase [Replicat 96.7 0.0058 1.3E-07 74.3 9.3 63 191-256 187-250 (649)
190 TIGR03499 FlhF flagellar biosy 96.6 0.007 1.5E-07 69.4 9.6 58 203-260 193-251 (282)
191 TIGR02768 TraA_Ti Ti-type conj 96.6 0.016 3.5E-07 74.9 13.5 123 188-356 351-474 (744)
192 cd02638 R3H_unknown_1 R3H doma 96.6 0.0056 1.2E-07 53.1 6.2 54 32-86 4-60 (62)
193 PRK08074 bifunctional ATP-depe 96.6 0.018 3.9E-07 76.4 13.7 136 547-688 739-890 (928)
194 KOG1123 RNA polymerase II tran 96.5 0.042 9E-07 65.3 14.9 122 537-691 523-652 (776)
195 PRK13889 conjugal transfer rel 96.5 0.021 4.6E-07 75.1 13.5 124 187-356 344-468 (988)
196 PRK12902 secA preprotein trans 96.4 0.011 2.4E-07 75.4 10.2 127 184-328 78-216 (939)
197 PF09848 DUF2075: Uncharacteri 96.4 0.0095 2.1E-07 70.4 8.8 52 205-258 2-54 (352)
198 TIGR02640 gas_vesic_GvpN gas v 96.4 0.016 3.4E-07 65.8 10.1 33 192-224 9-41 (262)
199 PRK00771 signal recognition pa 96.3 0.043 9.4E-07 66.5 14.0 123 204-360 95-218 (437)
200 TIGR00064 ftsY signal recognit 96.3 0.032 6.9E-07 63.7 12.2 130 203-364 71-207 (272)
201 PRK08181 transposase; Validate 96.3 0.014 3E-07 66.4 9.1 53 314-370 164-219 (269)
202 smart00382 AAA ATPases associa 96.3 0.01 2.3E-07 58.1 7.0 25 204-228 2-26 (148)
203 PF05127 Helicase_RecD: Helica 96.2 0.0013 2.9E-08 69.8 0.0 117 208-360 1-124 (177)
204 PRK13894 conjugal transfer ATP 96.1 0.035 7.5E-07 64.8 11.1 51 194-245 138-188 (319)
205 PRK10867 signal recognition pa 96.1 0.075 1.6E-06 64.4 14.3 135 204-369 100-237 (433)
206 PF05970 PIF1: PIF1-like helic 96.1 0.022 4.7E-07 67.8 9.5 56 193-251 5-66 (364)
207 PF13086 AAA_11: AAA domain; P 96.0 0.019 4.1E-07 62.5 8.3 66 192-257 4-75 (236)
208 PRK04296 thymidine kinase; Pro 96.0 0.044 9.5E-07 59.1 10.8 37 204-243 2-38 (190)
209 KOG0392 SNF2 family DNA-depend 96.0 0.32 6.9E-06 63.6 19.5 114 561-693 1340-1455(1549)
210 TIGR00959 ffh signal recogniti 95.9 0.063 1.4E-06 65.0 12.7 134 205-369 100-236 (428)
211 PHA03333 putative ATPase subun 95.9 0.17 3.6E-06 63.5 16.4 149 195-370 179-343 (752)
212 TIGR01425 SRP54_euk signal rec 95.9 0.078 1.7E-06 63.9 13.1 124 204-359 100-224 (429)
213 PRK08116 hypothetical protein; 95.9 0.054 1.2E-06 61.7 11.3 51 314-366 175-227 (268)
214 cd03115 SRP The signal recogni 95.8 0.1 2.3E-06 54.9 12.5 124 206-361 2-126 (173)
215 PRK10536 hypothetical protein; 95.8 0.018 4E-07 64.6 7.0 58 187-245 57-114 (262)
216 PF03266 NTPase_1: NTPase; In 95.8 0.028 6.2E-07 59.5 8.0 115 207-346 2-124 (168)
217 PRK00411 cdc6 cell division co 95.7 0.083 1.8E-06 63.2 12.8 22 204-225 55-76 (394)
218 PRK06835 DNA replication prote 95.7 0.071 1.5E-06 62.5 11.8 54 314-368 243-297 (329)
219 COG0556 UvrB Helicase subunit 95.7 0.043 9.3E-07 66.0 9.6 120 548-689 432-554 (663)
220 KOG0818 GTPase-activating prot 95.7 0.016 3.4E-07 68.3 5.9 78 436-516 144-221 (669)
221 TIGR02928 orc1/cdc6 family rep 95.7 0.059 1.3E-06 63.7 11.1 25 204-229 40-64 (365)
222 PHA02244 ATPase-like protein 95.7 0.035 7.6E-07 65.3 8.9 30 195-224 110-139 (383)
223 PF00580 UvrD-helicase: UvrD/R 95.7 0.022 4.7E-07 65.2 7.2 68 192-261 3-71 (315)
224 TIGR03420 DnaA_homol_Hda DnaA 95.6 0.065 1.4E-06 58.8 10.1 24 202-225 36-59 (226)
225 PRK09183 transposase/IS protei 95.4 0.17 3.7E-06 57.4 13.1 27 201-227 99-125 (259)
226 TIGR03015 pepcterm_ATPase puta 95.4 0.069 1.5E-06 60.2 10.0 26 201-226 39-65 (269)
227 PRK14956 DNA polymerase III su 95.4 0.063 1.4E-06 65.4 9.8 43 315-361 119-161 (484)
228 PRK07003 DNA polymerase III su 95.4 0.083 1.8E-06 67.1 11.1 30 196-225 27-59 (830)
229 PRK13826 Dtr system oriT relax 95.3 0.16 3.4E-06 67.6 13.8 122 188-356 380-503 (1102)
230 PF00931 NB-ARC: NB-ARC domain 95.3 0.038 8.3E-07 62.8 7.3 70 194-263 5-78 (287)
231 TIGR02881 spore_V_K stage V sp 95.2 0.099 2.2E-06 59.2 10.3 18 204-221 42-59 (261)
232 PRK07952 DNA replication prote 95.1 0.098 2.1E-06 58.7 9.8 56 314-370 159-215 (244)
233 PF00437 T2SE: Type II/IV secr 95.1 0.025 5.5E-07 64.1 5.1 46 197-245 120-165 (270)
234 PRK11747 dinG ATP-dependent DN 95.1 0.15 3.2E-06 65.8 12.5 93 547-648 522-617 (697)
235 cd01124 KaiC KaiC is a circadi 95.1 0.054 1.2E-06 57.4 7.3 38 206-244 1-38 (187)
236 TIGR00376 DNA helicase, putati 95.0 0.057 1.2E-06 68.7 8.2 65 191-258 159-224 (637)
237 PRK06893 DNA replication initi 94.9 0.094 2E-06 58.3 9.0 48 314-363 88-138 (229)
238 PF01637 Arch_ATPase: Archaeal 94.9 0.049 1.1E-06 59.3 6.6 31 196-226 10-42 (234)
239 PRK13833 conjugal transfer pro 94.9 0.047 1E-06 63.6 6.8 51 195-246 135-185 (323)
240 PRK12402 replication factor C 94.9 0.23 5.1E-06 57.8 12.6 31 195-225 25-57 (337)
241 KOG1000 Chromatin remodeling p 94.9 6.8 0.00015 47.5 24.0 107 558-686 489-598 (689)
242 cd01120 RecA-like_NTPases RecA 94.8 0.21 4.6E-06 50.9 10.5 25 206-230 1-25 (165)
243 TIGR02782 TrbB_P P-type conjug 94.8 0.06 1.3E-06 62.3 7.1 52 194-246 122-173 (299)
244 PRK08903 DnaA regulatory inact 94.7 0.15 3.2E-06 56.3 9.9 22 203-224 41-62 (227)
245 PF00004 AAA: ATPase family as 94.7 0.071 1.5E-06 52.7 6.7 42 318-359 59-112 (132)
246 PRK09087 hypothetical protein; 94.6 0.16 3.5E-06 56.4 9.8 56 319-377 89-151 (226)
247 PRK12323 DNA polymerase III su 94.6 0.16 3.5E-06 63.7 10.6 41 314-356 121-161 (700)
248 PF13191 AAA_16: AAA ATPase do 94.4 0.2 4.3E-06 52.7 9.5 24 202-225 22-45 (185)
249 PRK08533 flagellar accessory p 94.4 0.11 2.4E-06 57.8 7.8 51 201-252 21-71 (230)
250 PF01695 IstB_IS21: IstB-like 94.3 0.048 1E-06 58.3 4.7 53 314-370 105-160 (178)
251 PRK14873 primosome assembly pr 94.3 0.16 3.5E-06 64.8 9.9 128 211-366 167-310 (665)
252 COG2804 PulE Type II secretory 94.3 0.099 2.1E-06 63.4 7.5 108 188-345 240-351 (500)
253 PTZ00112 origin recognition co 94.2 0.49 1.1E-05 61.0 13.5 41 316-358 868-909 (1164)
254 PF06862 DUF1253: Protein of u 94.1 2.9 6.2E-05 50.9 19.4 116 558-694 297-417 (442)
255 PRK00149 dnaA chromosomal repl 94.1 0.16 3.4E-06 62.2 9.1 38 205-243 149-186 (450)
256 PRK08691 DNA polymerase III su 94.1 0.27 5.8E-06 62.4 11.1 42 313-356 115-156 (709)
257 TIGR00362 DnaA chromosomal rep 94.0 0.23 5E-06 59.9 10.2 38 205-243 137-174 (405)
258 TIGR02760 TraI_TIGR conjugativ 94.0 0.37 8E-06 68.5 13.5 138 187-358 427-566 (1960)
259 COG1618 Predicted nucleotide k 94.0 0.26 5.6E-06 51.5 8.9 116 206-347 7-130 (179)
260 PRK14961 DNA polymerase III su 94.0 0.23 5E-06 59.1 10.0 29 197-225 28-59 (363)
261 PRK06921 hypothetical protein; 94.0 0.3 6.5E-06 55.7 10.4 19 203-221 116-134 (266)
262 PRK14949 DNA polymerase III su 94.0 0.26 5.7E-06 63.9 10.8 46 315-364 117-162 (944)
263 PRK07994 DNA polymerase III su 93.9 0.12 2.5E-06 65.6 7.6 29 196-224 27-58 (647)
264 PRK09112 DNA polymerase III su 93.9 0.34 7.4E-06 57.4 11.0 30 195-224 33-65 (351)
265 PF13637 Ank_4: Ankyrin repeat 93.9 0.024 5.3E-07 47.9 1.0 52 462-513 1-52 (54)
266 PRK14960 DNA polymerase III su 93.8 0.32 7E-06 61.3 10.9 29 195-223 25-56 (702)
267 PRK14087 dnaA chromosomal repl 93.8 0.34 7.3E-06 59.3 11.0 40 205-245 142-181 (450)
268 TIGR01650 PD_CobS cobaltochela 93.8 0.25 5.3E-06 57.6 9.2 33 196-228 56-88 (327)
269 PRK07764 DNA polymerase III su 93.7 0.33 7.1E-06 63.4 11.2 41 313-355 116-156 (824)
270 PF13857 Ank_5: Ankyrin repeat 93.7 0.014 3.1E-07 50.0 -0.8 43 460-502 14-56 (56)
271 PRK08727 hypothetical protein; 93.6 0.23 4.9E-06 55.4 8.5 17 205-221 42-58 (233)
272 PRK08939 primosomal protein Dn 93.6 0.5 1.1E-05 54.9 11.5 54 314-368 214-269 (306)
273 PRK14957 DNA polymerase III su 93.6 0.33 7.1E-06 60.6 10.5 30 196-225 27-59 (546)
274 TIGR02524 dot_icm_DotB Dot/Icm 93.5 0.11 2.3E-06 61.7 6.0 32 197-229 126-158 (358)
275 KOG0386 Chromatin remodeling c 93.4 0.54 1.2E-05 60.5 12.0 125 546-694 713-840 (1157)
276 PRK14962 DNA polymerase III su 93.4 0.28 6E-06 60.4 9.4 28 197-224 26-56 (472)
277 PRK14958 DNA polymerase III su 93.3 0.48 1E-05 58.9 11.3 43 314-361 116-159 (509)
278 PF05621 TniB: Bacterial TniB 93.3 0.23 5E-06 57.0 7.8 59 205-263 62-124 (302)
279 PRK11331 5-methylcytosine-spec 93.2 0.39 8.3E-06 58.2 10.0 31 193-223 183-213 (459)
280 PF05496 RuvB_N: Holliday junc 93.2 0.15 3.3E-06 56.2 6.1 28 315-342 99-127 (233)
281 TIGR02880 cbbX_cfxQ probable R 93.2 0.27 5.9E-06 56.5 8.5 18 204-221 58-75 (284)
282 PRK14955 DNA polymerase III su 93.2 0.27 5.9E-06 59.2 8.8 29 196-224 27-58 (397)
283 PHA02544 44 clamp loader, smal 93.1 0.6 1.3E-05 54.1 11.3 39 316-356 99-138 (316)
284 PRK00440 rfc replication facto 93.1 0.72 1.6E-05 53.3 11.8 17 206-222 40-56 (319)
285 PRK13900 type IV secretion sys 92.9 0.16 3.4E-06 59.7 6.1 45 197-245 153-197 (332)
286 PRK12377 putative replication 92.9 0.92 2E-05 51.2 12.0 20 203-222 100-119 (248)
287 PHA02533 17 large terminase pr 92.9 0.99 2.1E-05 56.4 13.3 153 187-368 57-219 (534)
288 TIGR03345 VI_ClpV1 type VI sec 92.9 0.54 1.2E-05 62.0 11.5 122 206-369 598-728 (852)
289 PRK06645 DNA polymerase III su 92.8 0.59 1.3E-05 58.0 11.1 27 198-224 34-63 (507)
290 PRK14969 DNA polymerase III su 92.8 0.55 1.2E-05 58.7 10.9 41 313-355 115-155 (527)
291 KOG0514 Ankyrin repeat protein 92.7 0.048 1E-06 62.6 1.4 64 454-517 332-395 (452)
292 PRK14951 DNA polymerase III su 92.7 0.6 1.3E-05 59.1 11.1 41 313-356 120-161 (618)
293 PF13872 AAA_34: P-loop contai 92.7 1.4 3.1E-05 50.7 12.9 144 204-359 62-220 (303)
294 CHL00181 cbbX CbbX; Provisiona 92.6 0.64 1.4E-05 53.6 10.3 19 204-222 59-77 (287)
295 PRK05642 DNA replication initi 92.6 0.43 9.3E-06 53.3 8.7 48 314-364 94-144 (234)
296 cd01130 VirB11-like_ATPase Typ 92.5 0.12 2.7E-06 55.4 4.1 31 196-227 17-47 (186)
297 KOG0989 Replication factor C, 92.5 0.22 4.8E-06 56.8 6.1 114 203-359 56-169 (346)
298 PRK08084 DNA replication initi 92.4 0.43 9.3E-06 53.3 8.5 20 204-223 45-64 (235)
299 TIGR02525 plasmid_TraJ plasmid 92.4 0.23 4.9E-06 59.2 6.5 39 202-241 147-185 (372)
300 PF00308 Bac_DnaA: Bacterial d 92.4 0.36 7.8E-06 53.4 7.7 43 314-358 94-139 (219)
301 PRK04195 replication factor C 92.4 0.8 1.7E-05 56.7 11.5 21 204-224 39-59 (482)
302 PRK06067 flagellar accessory p 92.2 0.51 1.1E-05 52.4 8.7 40 201-241 22-61 (234)
303 PRK14088 dnaA chromosomal repl 92.2 0.55 1.2E-05 57.4 9.6 38 206-244 132-169 (440)
304 PRK00080 ruvB Holliday junctio 92.2 0.35 7.6E-06 56.7 7.7 18 204-221 51-68 (328)
305 PRK13695 putative NTPase; Prov 92.1 0.65 1.4E-05 49.1 9.0 18 207-224 3-20 (174)
306 PRK14952 DNA polymerase III su 92.1 0.73 1.6E-05 58.1 10.6 41 313-355 114-154 (584)
307 PRK09111 DNA polymerase III su 92.0 1 2.2E-05 57.1 11.9 42 313-356 128-169 (598)
308 TIGR00678 holB DNA polymerase 92.0 0.65 1.4E-05 49.7 8.8 30 196-225 3-35 (188)
309 PF12340 DUF3638: Protein of u 91.9 1.1 2.4E-05 49.7 10.6 144 181-328 15-183 (229)
310 KOG0391 SNF2 family DNA-depend 91.9 1 2.2E-05 58.8 11.4 123 547-693 1264-1388(1958)
311 smart00488 DEXDc2 DEAD-like he 91.8 0.46 1E-05 54.8 8.0 51 196-246 19-72 (289)
312 smart00489 DEXDc3 DEAD-like he 91.8 0.46 1E-05 54.8 8.0 51 196-246 19-72 (289)
313 COG1847 Jag Predicted RNA-bind 91.8 0.48 1E-05 51.3 7.4 44 43-87 163-207 (208)
314 PRK11823 DNA repair protein Ra 91.8 0.43 9.3E-06 58.4 8.1 35 195-229 70-105 (446)
315 COG1875 NYN ribonuclease and A 91.8 0.8 1.7E-05 53.5 9.6 144 185-356 224-385 (436)
316 PF13307 Helicase_C_2: Helicas 91.8 0.18 3.8E-06 53.3 4.2 125 560-691 8-150 (167)
317 PRK04841 transcriptional regul 91.8 0.53 1.1E-05 62.5 9.6 25 202-226 30-54 (903)
318 PRK14964 DNA polymerase III su 91.7 1 2.3E-05 55.5 11.2 41 313-355 112-152 (491)
319 PRK14959 DNA polymerase III su 91.6 0.85 1.8E-05 57.6 10.5 29 195-223 26-57 (624)
320 COG1484 DnaC DNA replication p 91.5 1 2.3E-05 50.9 10.3 119 196-369 97-218 (254)
321 COG1474 CDC6 Cdc6-related prot 91.5 1 2.2E-05 53.7 10.5 126 206-369 44-173 (366)
322 PF13555 AAA_29: P-loop contai 91.3 0.13 2.8E-06 45.4 2.2 18 204-221 23-40 (62)
323 PRK14950 DNA polymerase III su 91.3 0.59 1.3E-05 59.2 8.9 29 197-225 28-59 (585)
324 COG1444 Predicted P-loop ATPas 91.3 1.5 3.2E-05 56.2 12.2 120 205-360 232-357 (758)
325 PRK10865 protein disaggregatio 91.1 1.2 2.6E-05 58.9 11.8 26 206-232 600-625 (857)
326 PF12796 Ank_2: Ankyrin repeat 91.1 0.098 2.1E-06 48.5 1.2 56 462-517 26-81 (89)
327 PRK14963 DNA polymerase III su 90.8 1.2 2.6E-05 55.4 10.7 41 313-355 112-152 (504)
328 PRK12899 secA preprotein trans 90.8 1.3 2.9E-05 57.7 11.3 103 560-690 567-679 (970)
329 PRK14953 DNA polymerase III su 90.8 0.86 1.9E-05 56.4 9.4 26 196-221 27-55 (486)
330 TIGR00635 ruvB Holliday juncti 90.8 0.54 1.2E-05 54.3 7.3 18 205-222 31-48 (305)
331 cd01131 PilT Pilus retraction 90.7 0.29 6.4E-06 53.1 4.7 34 206-241 3-36 (198)
332 cd03282 ABC_MSH4_euk MutS4 hom 90.6 0.36 7.8E-06 52.8 5.3 25 202-226 27-51 (204)
333 PRK07471 DNA polymerase III su 90.6 1.2 2.7E-05 53.0 10.2 45 313-359 137-181 (365)
334 PF06745 KaiC: KaiC; InterPro 90.6 0.46 1E-05 52.4 6.2 43 201-243 16-58 (226)
335 cd01129 PulE-GspE PulE/GspE Th 90.6 0.3 6.5E-06 55.6 4.8 30 196-225 71-101 (264)
336 COG3267 ExeA Type II secretory 90.5 1.5 3.3E-05 49.1 9.9 62 197-261 43-105 (269)
337 PRK15483 type III restriction- 90.5 1.4 3.1E-05 57.9 11.1 152 202-361 57-240 (986)
338 PTZ00293 thymidine kinase; Pro 90.4 0.45 9.7E-06 52.2 5.7 39 203-244 3-41 (211)
339 PRK13851 type IV secretion sys 90.4 0.3 6.5E-06 57.6 4.7 45 197-245 155-199 (344)
340 PHA03368 DNA packaging termina 90.4 2.2 4.9E-05 53.7 12.2 149 192-369 243-400 (738)
341 PRK07133 DNA polymerase III su 90.3 1.5 3.2E-05 56.4 10.9 29 196-224 29-60 (725)
342 PRK08451 DNA polymerase III su 90.3 1.3 2.8E-05 55.3 10.2 42 313-356 113-154 (535)
343 cd01393 recA_like RecA is a b 90.3 0.66 1.4E-05 50.9 7.1 31 200-230 15-45 (226)
344 PLN03025 replication factor C 90.2 1.6 3.5E-05 50.9 10.6 20 205-224 35-54 (319)
345 TIGR00763 lon ATP-dependent pr 90.2 1.1 2.5E-05 58.5 10.2 20 203-222 346-365 (775)
346 PRK14965 DNA polymerase III su 90.1 1.2 2.6E-05 56.4 10.0 30 195-224 26-58 (576)
347 PRK12901 secA preprotein trans 90.1 1.2 2.5E-05 58.5 9.9 117 193-327 171-300 (1112)
348 TIGR02858 spore_III_AA stage I 90.0 1.8 3.8E-05 49.5 10.4 30 195-224 99-131 (270)
349 KOG1802 RNA helicase nonsense 89.9 0.73 1.6E-05 57.0 7.3 69 187-257 407-476 (935)
350 COG0470 HolB ATPase involved i 89.9 0.94 2E-05 52.3 8.3 41 314-356 106-146 (325)
351 PRK13709 conjugal transfer nic 89.9 3.8 8.2E-05 57.6 15.0 62 189-251 967-1032(1747)
352 TIGR03877 thermo_KaiC_1 KaiC d 89.8 0.56 1.2E-05 52.4 6.1 51 201-255 18-68 (237)
353 cd00267 ABC_ATPase ABC (ATP-bi 89.8 0.55 1.2E-05 48.7 5.6 22 201-222 22-43 (157)
354 PRK14970 DNA polymerase III su 89.6 1.7 3.7E-05 51.6 10.4 29 196-224 28-59 (367)
355 PHA00729 NTP-binding motif con 89.5 0.69 1.5E-05 51.3 6.3 16 206-221 19-34 (226)
356 PRK12422 chromosomal replicati 89.5 0.79 1.7E-05 56.1 7.5 18 205-222 142-159 (445)
357 PHA00149 DNA encapsidation pro 89.5 2 4.3E-05 48.8 9.8 145 208-388 21-187 (331)
358 cd01128 rho_factor Transcripti 89.5 0.38 8.3E-06 54.2 4.5 29 200-229 12-40 (249)
359 PRK14086 dnaA chromosomal repl 89.4 0.63 1.4E-05 58.5 6.6 17 205-221 315-331 (617)
360 PF01443 Viral_helicase1: Vira 89.4 0.25 5.4E-06 54.3 2.9 22 207-228 1-22 (234)
361 cd03247 ABCC_cytochrome_bd The 89.3 0.77 1.7E-05 48.7 6.5 22 201-222 25-46 (178)
362 PRK13764 ATPase; Provisional 89.3 0.5 1.1E-05 59.4 5.7 33 197-230 249-282 (602)
363 TIGR03689 pup_AAA proteasome A 89.2 1.1 2.5E-05 55.4 8.6 25 203-228 215-239 (512)
364 PF05894 Podovirus_Gp16: Podov 89.2 4.9 0.00011 46.4 12.8 134 197-368 12-168 (333)
365 COG1219 ClpX ATP-dependent pro 89.2 0.55 1.2E-05 53.9 5.3 29 289-328 145-173 (408)
366 cd00984 DnaB_C DnaB helicase C 89.1 0.37 8E-06 53.5 4.0 41 196-236 5-45 (242)
367 TIGR01420 pilT_fam pilus retra 89.1 0.46 1E-05 56.1 5.0 44 196-241 113-157 (343)
368 COG3910 Predicted ATPase [Gene 89.0 0.26 5.5E-06 52.7 2.4 37 186-224 21-57 (233)
369 TIGR02397 dnaX_nterm DNA polym 89.0 2.7 5.8E-05 49.5 11.3 25 197-221 26-53 (355)
370 COG0541 Ffh Signal recognition 88.9 5 0.00011 48.3 13.2 134 204-369 100-236 (451)
371 COG1126 GlnQ ABC-type polar am 88.9 0.22 4.7E-06 54.4 1.8 22 200-221 24-45 (240)
372 PRK14954 DNA polymerase III su 88.9 1.3 2.8E-05 56.3 8.9 27 197-223 28-57 (620)
373 TIGR02639 ClpA ATP-dependent C 88.8 3.1 6.6E-05 54.3 12.6 33 189-221 183-220 (731)
374 COG1116 TauB ABC-type nitrate/ 88.8 0.22 4.7E-06 55.6 1.8 21 201-221 26-46 (248)
375 PRK14971 DNA polymerase III su 88.8 2.7 5.8E-05 53.6 11.7 33 195-228 27-62 (614)
376 COG0467 RAD55 RecA-superfamily 88.7 0.76 1.6E-05 52.0 6.2 45 201-246 20-64 (260)
377 cd01121 Sms Sms (bacterial rad 88.7 1.1 2.3E-05 53.6 7.7 35 195-229 72-107 (372)
378 PF12846 AAA_10: AAA-like doma 88.7 0.47 1E-05 53.9 4.5 40 204-246 1-40 (304)
379 COG3839 MalK ABC-type sugar tr 88.4 0.23 5.1E-06 58.1 1.8 21 201-221 26-46 (338)
380 COG2805 PilT Tfp pilus assembl 88.4 0.3 6.5E-06 55.6 2.6 23 203-225 124-146 (353)
381 COG2255 RuvB Holliday junction 88.3 0.87 1.9E-05 51.7 6.1 65 205-331 53-117 (332)
382 COG1136 SalX ABC-type antimicr 88.3 0.25 5.4E-06 54.7 1.9 22 201-222 28-49 (226)
383 cd02034 CooC The accessory pro 88.3 3 6.5E-05 41.5 9.3 94 207-326 2-95 (116)
384 PRK10787 DNA-binding ATP-depen 88.3 1.3 2.8E-05 58.0 8.5 31 191-221 328-366 (784)
385 KOG0741 AAA+-type ATPase [Post 88.2 2 4.2E-05 52.4 9.2 120 206-381 540-674 (744)
386 PRK05973 replicative DNA helic 88.2 0.52 1.1E-05 52.8 4.3 47 194-241 54-100 (237)
387 KOG1002 Nucleotide excision re 88.1 3.6 7.9E-05 49.5 11.1 158 187-359 182-354 (791)
388 PF13207 AAA_17: AAA domain; P 88.1 0.3 6.4E-06 48.0 2.1 16 206-221 1-16 (121)
389 CHL00095 clpC Clp protease ATP 88.0 2.7 5.8E-05 55.6 11.4 33 189-221 180-217 (821)
390 TIGR02655 circ_KaiC circadian 88.0 0.78 1.7E-05 56.8 6.1 42 201-242 18-59 (484)
391 PRK04328 hypothetical protein; 87.9 0.89 1.9E-05 51.2 6.1 40 201-241 20-59 (249)
392 TIGR03878 thermo_KaiC_2 KaiC d 87.9 0.94 2E-05 51.4 6.3 41 201-242 33-73 (259)
393 PRK14948 DNA polymerase III su 87.8 2.2 4.7E-05 54.4 10.0 28 197-224 28-58 (620)
394 PRK07940 DNA polymerase III su 87.7 3 6.6E-05 50.2 10.7 43 313-358 113-155 (394)
395 TIGR00150 HI0065_YjeE ATPase, 87.7 0.41 8.8E-06 48.8 2.8 31 196-227 14-44 (133)
396 PRK07667 uridine kinase; Provi 87.7 1 2.2E-05 48.7 6.1 33 195-228 4-40 (193)
397 COG1117 PstB ABC-type phosphat 87.7 0.3 6.4E-06 53.3 1.9 21 201-221 30-50 (253)
398 PRK05896 DNA polymerase III su 87.6 1.6 3.4E-05 55.1 8.4 29 196-224 27-58 (605)
399 TIGR00604 rad3 DNA repair heli 87.6 4 8.8E-05 53.0 12.5 135 549-688 511-671 (705)
400 cd03228 ABCC_MRP_Like The MRP 87.4 1.8 3.9E-05 45.7 7.7 22 201-222 25-46 (171)
401 cd03281 ABC_MSH5_euk MutS5 hom 87.4 2.8 6.2E-05 46.1 9.5 24 204-227 29-52 (213)
402 TIGR03346 chaperone_ClpB ATP-d 87.3 2.9 6.4E-05 55.4 11.2 27 205-232 596-622 (852)
403 TIGR02760 TraI_TIGR conjugativ 87.3 2.9 6.3E-05 59.9 11.7 124 189-356 1019-1147(1960)
404 PRK05563 DNA polymerase III su 87.3 3.1 6.7E-05 52.5 10.8 29 313-343 115-143 (559)
405 COG4962 CpaF Flp pilus assembl 87.2 0.71 1.5E-05 53.8 4.7 46 197-246 166-211 (355)
406 PRK14712 conjugal transfer nic 87.2 6.2 0.00013 55.0 14.2 62 190-252 836-901 (1623)
407 cd01122 GP4d_helicase GP4d_hel 87.2 0.29 6.4E-06 55.4 1.7 47 195-241 21-67 (271)
408 PF00005 ABC_tran: ABC transpo 87.1 0.28 6E-06 49.3 1.3 22 201-222 8-29 (137)
409 PRK03992 proteasome-activating 87.1 1.5 3.3E-05 52.8 7.7 19 203-221 164-182 (389)
410 KOG4412 26S proteasome regulat 87.0 0.7 1.5E-05 48.9 4.1 59 459-517 69-128 (226)
411 TIGR02788 VirB11 P-type DNA tr 86.9 0.71 1.5E-05 53.7 4.7 43 197-243 137-179 (308)
412 COG4525 TauB ABC-type taurine 86.9 0.36 7.7E-06 51.9 1.9 23 200-222 27-49 (259)
413 PRK10919 ATP-dependent DNA hel 86.8 1.3 2.8E-05 57.2 7.3 67 192-260 5-72 (672)
414 cd03246 ABCC_Protease_Secretio 86.7 1.2 2.5E-05 47.2 5.8 22 201-222 25-46 (173)
415 KOG0737 AAA+-type ATPase [Post 86.7 0.82 1.8E-05 53.5 4.9 103 201-359 124-239 (386)
416 PF02367 UPF0079: Uncharacteri 86.5 0.51 1.1E-05 47.5 2.7 29 194-222 5-33 (123)
417 PRK10263 DNA translocase FtsK; 86.5 1.2 2.5E-05 59.9 6.6 40 205-244 1011-1051(1355)
418 COG3973 Superfamily I DNA and 86.4 1.2 2.7E-05 54.9 6.3 80 175-261 203-285 (747)
419 TIGR00767 rho transcription te 86.3 0.66 1.4E-05 55.5 3.9 29 200-229 164-192 (415)
420 COG0593 DnaA ATPase involved i 86.2 4 8.7E-05 49.1 10.5 72 279-357 142-216 (408)
421 TIGR00750 lao LAO/AO transport 86.2 1.3 2.8E-05 51.4 6.2 41 202-243 32-72 (300)
422 TIGR01547 phage_term_2 phage t 86.1 3.3 7.2E-05 49.8 10.0 52 204-255 1-53 (396)
423 TIGR02237 recomb_radB DNA repa 86.1 1 2.2E-05 48.9 5.1 39 202-241 10-48 (209)
424 KOG2373 Predicted mitochondria 86.1 0.46 9.9E-06 54.7 2.4 59 195-255 264-325 (514)
425 PF13671 AAA_33: AAA domain; P 86.0 0.55 1.2E-05 47.4 2.8 20 206-225 1-20 (143)
426 PRK06305 DNA polymerase III su 86.0 2.7 5.8E-05 51.7 9.2 29 196-224 28-59 (451)
427 PRK13341 recombination factor 86.0 2.8 6E-05 54.4 9.6 18 205-222 53-70 (725)
428 PF03193 DUF258: Protein of un 86.0 0.68 1.5E-05 48.8 3.5 30 195-225 27-56 (161)
429 TIGR03881 KaiC_arch_4 KaiC dom 85.6 1.4 3E-05 48.6 5.9 40 200-240 16-55 (229)
430 TIGR02533 type_II_gspE general 85.5 0.89 1.9E-05 56.2 4.8 33 196-229 233-266 (486)
431 TIGR03263 guanyl_kin guanylate 85.5 0.62 1.3E-05 49.3 3.0 20 204-223 1-20 (180)
432 PHA02730 ankyrin-like protein; 85.4 0.51 1.1E-05 59.9 2.6 59 460-518 39-102 (672)
433 KOG1970 Checkpoint RAD17-RFC c 85.3 0.46 1E-05 57.9 2.1 22 203-224 109-130 (634)
434 PRK05342 clpX ATP-dependent pr 85.3 3.1 6.8E-05 50.4 9.1 18 204-221 108-125 (412)
435 PRK11034 clpA ATP-dependent Cl 85.2 5.3 0.00011 52.1 11.7 33 189-221 187-224 (758)
436 TIGR02639 ClpA ATP-dependent C 85.2 3.8 8.2E-05 53.5 10.5 16 206-221 486-501 (731)
437 PRK10865 protein disaggregatio 85.2 3.6 7.7E-05 54.6 10.3 35 187-221 177-216 (857)
438 cd03114 ArgK-like The function 85.2 9.2 0.0002 39.6 11.4 53 315-376 89-144 (148)
439 cd03238 ABC_UvrA The excision 85.1 0.47 1E-05 50.7 1.9 24 201-224 18-41 (176)
440 PRK00300 gmk guanylate kinase; 85.0 0.64 1.4E-05 50.3 2.9 24 202-225 3-26 (205)
441 TIGR01074 rep ATP-dependent DN 85.0 2 4.3E-05 55.3 7.8 66 193-260 5-71 (664)
442 cd00820 PEPCK_HprK Phosphoenol 85.0 0.53 1.1E-05 46.2 1.9 25 201-225 12-36 (107)
443 TIGR02655 circ_KaiC circadian 84.9 1.4 3.1E-05 54.5 6.2 43 201-244 260-302 (484)
444 PF13177 DNA_pol3_delta2: DNA 84.9 6 0.00013 41.6 10.0 44 314-359 99-142 (162)
445 PRK11054 helD DNA helicase IV; 84.9 3.4 7.4E-05 53.3 9.6 71 186-260 193-266 (684)
446 PF12775 AAA_7: P-loop contain 84.7 1.1 2.3E-05 51.4 4.6 26 200-225 29-54 (272)
447 PRK06647 DNA polymerase III su 84.6 4 8.7E-05 51.5 9.9 29 196-224 27-58 (563)
448 PF03237 Terminase_6: Terminas 84.5 8.3 0.00018 44.8 12.1 131 208-359 1-137 (384)
449 KOG4412 26S proteasome regulat 84.5 0.61 1.3E-05 49.3 2.2 57 460-516 104-160 (226)
450 TIGR00235 udk uridine kinase. 84.3 0.52 1.1E-05 51.4 1.8 19 203-221 5-23 (207)
451 TIGR03346 chaperone_ClpB ATP-d 84.3 5.9 0.00013 52.6 11.8 36 188-223 173-213 (852)
452 COG2256 MGS1 ATPase related to 84.3 1.7 3.6E-05 51.7 5.8 36 317-359 104-140 (436)
453 PF00023 Ank: Ankyrin repeat H 84.2 0.3 6.4E-06 37.1 -0.1 31 462-492 2-32 (33)
454 CHL00176 ftsH cell division pr 84.2 4.5 9.8E-05 51.7 10.2 21 204-224 216-236 (638)
455 PRK10436 hypothetical protein; 84.0 1.3 2.7E-05 54.5 5.0 33 196-229 209-242 (462)
456 TIGR02538 type_IV_pilB type IV 84.0 1.1 2.5E-05 56.4 4.8 35 194-229 305-340 (564)
457 PRK12900 secA preprotein trans 83.9 1.1 2.3E-05 58.7 4.6 120 190-327 137-268 (1025)
458 TIGR02688 conserved hypothetic 83.9 2 4.3E-05 51.8 6.4 23 199-221 204-226 (449)
459 KOG1805 DNA replication helica 83.8 1.8 3.9E-05 56.0 6.3 60 193-255 674-733 (1100)
460 TIGR01243 CDC48 AAA family ATP 83.8 4 8.7E-05 53.3 9.8 20 202-221 210-229 (733)
461 PRK09435 membrane ATPase/prote 83.7 3.9 8.5E-05 48.1 8.7 49 195-244 43-95 (332)
462 cd01123 Rad51_DMC1_radA Rad51_ 83.7 1.2 2.5E-05 49.3 4.3 29 201-229 16-44 (235)
463 cd02028 UMPK_like Uridine mono 83.7 1.2 2.6E-05 47.6 4.2 18 206-223 1-18 (179)
464 COG0552 FtsY Signal recognitio 83.5 6.3 0.00014 46.0 10.0 133 205-369 140-281 (340)
465 TIGR01075 uvrD DNA helicase II 83.4 2.5 5.5E-05 55.0 7.8 66 193-260 8-74 (715)
466 cd00544 CobU Adenosylcobinamid 83.4 3 6.4E-05 44.3 7.0 45 207-257 2-46 (169)
467 cd03280 ABC_MutS2 MutS2 homolo 83.4 3 6.5E-05 45.2 7.2 24 205-228 29-52 (200)
468 COG1122 CbiO ABC-type cobalt t 83.2 0.6 1.3E-05 52.2 1.7 23 201-223 27-49 (235)
469 PRK08233 hypothetical protein; 83.2 0.84 1.8E-05 48.1 2.8 21 204-224 3-23 (182)
470 PF01580 FtsK_SpoIIIE: FtsK/Sp 83.2 1.4 3.1E-05 47.7 4.7 43 202-244 36-79 (205)
471 COG0630 VirB11 Type IV secreto 83.1 1.1 2.4E-05 52.2 4.0 29 197-225 136-164 (312)
472 TIGR03238 dnd_assoc_3 dnd syst 82.9 0.74 1.6E-05 56.1 2.4 22 201-222 29-50 (504)
473 TIGR01243 CDC48 AAA family ATP 82.8 2.9 6.4E-05 54.5 8.0 20 204-223 487-506 (733)
474 KOG1710 MYND Zn-finger and ank 82.7 1.8 3.9E-05 48.7 5.1 63 457-519 74-136 (396)
475 PF03354 Terminase_1: Phage Te 82.7 3.5 7.5E-05 51.0 8.3 136 206-359 25-164 (477)
476 CHL00095 clpC Clp protease ATP 82.7 3.9 8.5E-05 54.0 9.2 25 206-231 541-565 (821)
477 PRK05541 adenylylsulfate kinas 82.5 1 2.2E-05 47.7 3.0 25 200-224 3-27 (176)
478 cd01394 radB RadB. The archaea 82.4 1.4 3.1E-05 48.2 4.3 29 201-229 16-44 (218)
479 COG0610 Type I site-specific r 82.2 4.1 8.8E-05 54.6 9.1 128 207-359 276-413 (962)
480 cd01127 TrwB Bacterial conjuga 82.2 1.4 3E-05 53.5 4.4 41 203-246 41-81 (410)
481 COG3421 Uncharacterized protei 82.2 6.7 0.00014 48.6 9.8 144 211-367 4-175 (812)
482 cd03227 ABC_Class2 ABC-type Cl 82.1 3.6 7.8E-05 43.1 7.0 26 204-229 21-46 (162)
483 TIGR03880 KaiC_arch_3 KaiC dom 82.1 1.5 3.3E-05 48.3 4.3 51 201-255 13-63 (224)
484 COG1120 FepC ABC-type cobalami 81.9 0.75 1.6E-05 52.0 1.9 21 201-221 25-45 (258)
485 TIGR00604 rad3 DNA repair heli 81.8 3.1 6.8E-05 54.0 7.7 51 195-245 20-70 (705)
486 TIGR01166 cbiO cobalt transpor 81.8 0.77 1.7E-05 49.2 1.8 21 201-221 15-35 (190)
487 KOG0508 Ankyrin repeat protein 81.5 2 4.2E-05 51.4 5.1 76 439-518 131-206 (615)
488 PF13238 AAA_18: AAA domain; P 81.5 0.85 1.8E-05 44.8 1.9 21 207-228 1-21 (129)
489 PRK10078 ribose 1,5-bisphospho 81.5 0.92 2E-05 48.6 2.3 21 204-224 2-22 (186)
490 PRK13541 cytochrome c biogenes 81.5 0.79 1.7E-05 49.4 1.8 21 201-221 23-43 (195)
491 PRK11034 clpA ATP-dependent Cl 81.3 3.3 7.1E-05 54.0 7.5 17 206-222 490-506 (758)
492 PF07728 AAA_5: AAA domain (dy 81.2 1.1 2.3E-05 45.4 2.6 16 207-222 2-17 (139)
493 cd03255 ABC_MJ0796_Lo1CDE_FtsE 81.2 0.8 1.7E-05 50.1 1.8 21 201-221 27-47 (218)
494 cd03226 ABC_cobalt_CbiO_domain 81.2 0.82 1.8E-05 49.6 1.8 22 201-222 23-44 (205)
495 cd03269 ABC_putative_ATPase Th 81.0 0.84 1.8E-05 49.7 1.8 22 201-222 23-44 (210)
496 TIGR02322 phosphon_PhnN phosph 81.0 0.97 2.1E-05 47.8 2.3 19 205-223 2-20 (179)
497 cd03292 ABC_FtsE_transporter F 81.0 0.84 1.8E-05 49.7 1.8 21 201-221 24-44 (214)
498 TIGR03608 L_ocin_972_ABC putat 81.0 0.81 1.8E-05 49.5 1.7 21 201-221 21-41 (206)
499 cd03235 ABC_Metallic_Cations A 80.9 0.85 1.8E-05 49.7 1.8 22 201-222 22-43 (213)
500 cd03224 ABC_TM1139_LivF_branch 80.9 0.81 1.8E-05 50.2 1.7 21 201-221 23-43 (222)
No 1
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.2e-168 Score=1540.78 Aligned_cols=849 Identities=41% Similarity=0.648 Sum_probs=707.8
Q ss_pred CCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEeccccccccccccccCCceecChhHHHHHHHHHhcCCCCCCCccccc
Q 000916 53 LSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCKSKKRVETDKGKEILPSLTFSEGSKLVLQDLFTHYPPDDGEPGEKL 132 (1225)
Q Consensus 53 ~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~k~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~p~~~~e~~~~~ 132 (1225)
+....+++ |.....+.+..++.+.-.++++.++.+....-.+. ................+..... +.....+.. .
T Consensus 60 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~ 134 (924)
T KOG0920|consen 60 LIQIARSS-STAKNLMKFHTVSKITEPSRLLDLSPKPMTLQAKL-KLKAEAENKAAALVCKLLESLK-LVDRNNENL--L 134 (924)
T ss_pred HHHHHHhh-hhhhhcccceeeeccCCCCceeeecccccchhhhh-eecccccchhHHHHHHHHHHhc-cCCCccccc--c
Confidence 44445555 66666667777888888888888876643211110 1111222222223333333332 222221111 0
Q ss_pred ccccccccccccCcccccccCCCCCHHHHHHHHHHHHhhhhhchhhHHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEcc
Q 000916 133 DANQSRKSDKTRGKRVDIFCKPKMSKAEIAMKVESLTSRIEKDANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGE 212 (1225)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~Ge 212 (1225)
.... . +.+..+..+ .+. .......+..+++++..|.+||+|++|++||++|++||||+|+|+
T Consensus 135 ~~~~----~----~~d~~~~~~-----s~~-----~~~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGe 196 (924)
T KOG0920|consen 135 LPTT----G----QKDEPLLKK-----SIS-----RQSEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGE 196 (924)
T ss_pred cccc----c----ccccccCcc-----hhh-----hhchhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCC
Confidence 0000 0 111112111 111 233344678899999999999999999999999999999999999
Q ss_pred CCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccEEEEccHHHH
Q 000916 213 TGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLL 292 (1225)
Q Consensus 213 TGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I~f~T~GvLL 292 (1225)
|||||||||||||||+.+..+..|+|+|||||||+||+||+|||.|||+.+|.+||||||++++.+..|+|+|||+|+||
T Consensus 197 TGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLL 276 (924)
T KOG0920|consen 197 TGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLL 276 (924)
T ss_pred CCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHH
Confidence 99999999999999999887799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccccHHHHHhhhCCCC
Q 000916 293 RLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLDADRFSQYFGGCP 372 (1225)
Q Consensus 293 r~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~~p 372 (1225)
|.|+++ +.|.++|||||||||||++++||||.++|++|.++|+|||||||||+|++.|++||++||
T Consensus 277 r~L~~~--------------~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~p 342 (924)
T KOG0920|consen 277 RRLQSD--------------PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYFGGCP 342 (924)
T ss_pred HHhccC--------------cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHhCCCc
Confidence 999987 489999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCC
Q 000916 373 VIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPN 452 (1225)
Q Consensus 373 vi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 452 (1225)
||+||||+|||++|||||+++.++|.....-.
T Consensus 343 vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~------------------------------------------------ 374 (924)
T KOG0920|consen 343 VITIPGRTFPVKEYFLEDILSKTGYVSEDDSA------------------------------------------------ 374 (924)
T ss_pred eEeecCCCcchHHHHHHHHHHHhccccccccc------------------------------------------------
Confidence 99999999999999999999998764321000
Q ss_pred cccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHH
Q 000916 453 VYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLD 532 (1225)
Q Consensus 453 ~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~ 532 (1225)
|.....+ ++..
T Consensus 375 ---~~~~~~~--~~~~---------------------------------------------------------------- 385 (924)
T KOG0920|consen 375 ---RSGPERS--QLRL---------------------------------------------------------------- 385 (924)
T ss_pred ---ccccccC--cccc----------------------------------------------------------------
Confidence 0000000 0000
Q ss_pred hhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhc
Q 000916 533 KYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFK 612 (1225)
Q Consensus 533 ~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~ 612 (1225)
.++..+.++ ||++||++++.+|+....+|+||||||||+||..+.+.|..+..+.+..++.|+||||.|+.++|+.||.
T Consensus 386 ~~~~~~~~~-id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~ 464 (924)
T KOG0920|consen 386 ARLKLWEPE-IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFK 464 (924)
T ss_pred ccchhcccc-ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcC
Confidence 001122233 9999999999999999899999999999999999999999887787778899999999999999999999
Q ss_pred CCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHH
Q 000916 613 RPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQL 692 (1225)
Q Consensus 613 ~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~ 692 (1225)
++|+|+||||+||||||||||||||+||||||++||++||+.+++++|..+|||||+|+||+|||||+++|+|||||++.
T Consensus 465 ~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 465 RPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRS 544 (924)
T ss_pred CCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC-CCCCcccccChhhHHHHHhhcCCCCChhhhhhhcCCCCcHHHHHHHHHHHHHcCCCCCCCcccccccccccc
Q 000916 693 RAASLPD-FQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCL 771 (1225)
Q Consensus 693 ~~~~m~~-~~~PEI~R~pL~~l~L~~K~l~~~~~i~~fL~~~ldPP~~~av~~Al~~L~~lgALd~~e~LT~LG~~La~L 771 (1225)
+|+.|.+ |++|||+|+||+++||++|.|.. +++.+||+++++||+..+|.+|+..|+.+|||+.+++||+||++|+.|
T Consensus 545 ~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~-~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~l 623 (924)
T KOG0920|consen 545 RYEKLMLAYQLPEILRTPLEELCLHIKVLEQ-GSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASL 623 (924)
T ss_pred hhhhcccccCChHHHhChHHHhhheeeeccC-CCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhC
Confidence 9998888 99999999999999999999987 578899999999999999999999999999999999999999999999
Q ss_pred cCchhhhHHHHHHhhcCChhHHHHHhhccCCCCCccCCCChhHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhhc
Q 000916 772 SVHPLMSKMLFFAILMDCLDPALTLACASDYRDPFTLPISPNEKKRATAAKFELASLYGGQSDQLAVIAAFECWKNAKQR 851 (1225)
Q Consensus 772 Pvdp~lgKmLl~g~~~~CldpiltIaA~ls~~~pF~~P~~~~~~~~a~~~k~~~~~~~~~~SDhl~~l~af~~w~~~~~~ 851 (1225)
|+||++|||+++|++|+|+||+++|||+|++++||+.|.++ ++.+.+++..|+. +..||||++++||+.|+++...
T Consensus 624 Pvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~--~~~~~~~~~~~~~--~~~SD~la~~~ay~~w~~~~~~ 699 (924)
T KOG0920|consen 624 PVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGK--REEADKAKKLLAL--DSISDHLAVVRAYAGWREILRS 699 (924)
T ss_pred CCccccchhheehhhccccchhhhHHHHhccCCCcccCCCc--hhHHHHHHHHhcc--CCcchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999874 5566777777764 4579999999999999998877
Q ss_pred --CchHHHHHHhccchhHHHHHHHHHHHHHHHHHHcCCCCCC------CCCCCCCCCChHHHHHHHHhccCccceeecCC
Q 000916 852 --GQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPED------VSSCSHNARVPGIIHAVLMAGLYPMVARLRPP 923 (1225)
Q Consensus 852 --~~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~~gfv~~~------~~~~n~ns~~~~lika~L~aGlyPnVAr~~~~ 923 (1225)
....+||++||||..+|+++.++|.||.+.|.++||++.+ ...+|.|+.++++++++||||||||++++...
T Consensus 700 ~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~ 779 (924)
T KOG0920|consen 700 GPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRM 779 (924)
T ss_pred cchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecc
Confidence 4567999999999999999999999999999999999863 34578899999999999999999999998741
Q ss_pred C-CCCceEEEecCCcEEEECCCCcCCccCCCCCCCCCeEEEEeeccccCceEEeeccccChhhHHhhcccccccCCCCCC
Q 000916 924 H-KNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVYDEITRGDGGMHVRNCTVVGPLPLLLLATEIAVAPAPDNE 1002 (1225)
Q Consensus 924 ~-~~~~~~v~t~~~~~V~iHPsSvl~~~~~~~~~~~~wvvy~E~~~t~~k~~ir~~T~V~p~~LlLfgg~~~~~~~~~~~ 1002 (1225)
. +.....+.+.....|++||+|||+... .+..+|++|+|+++|++.+|+|++|+|++++++||||.+.....
T Consensus 780 ~~~~~~~~~~~~~~~~v~i~~~sv~~~~~---~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~~~~~---- 852 (924)
T KOG0920|consen 780 EPKSKSVTFVTKADGRVIIHPSSVNEQST---GFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGISTVRM---- 852 (924)
T ss_pred cCCcCcceeecCCceeEEEecchhhcccc---ccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCceeecC----
Confidence 1 111122445555699999999998743 34567999999999965599999999999999999998753110
Q ss_pred CCCCCCCCCCCccccCCCccccccccccccCCCCCccccCCCCceEEEecCeEEeccChhhHHHHHHHHHHHHHHHHHHH
Q 000916 1003 DDDEDDDMSDDDADENESDEDCMEIDDKTSGQHGENVMSSPDKSVTVVVDRWLYFGSTALDIAQIYCLRERLSVAILFKV 1082 (1225)
Q Consensus 1003 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~vD~Wi~f~~~~~~~~~i~~lR~~l~~ll~~ki 1082 (1225)
.+ ++...+..|+|+.|.+++.++.++..||..++.+|.+++
T Consensus 853 ------------~~---------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~Lr~~l~~~l~~~~ 893 (924)
T KOG0920|consen 853 ------------KS---------------------------GSLALLLPDGWLRFKALPKTARLLKELRRELDSLLSKKI 893 (924)
T ss_pred ------------CC---------------------------CccceecCCceEEeecchhHHHHHHHHHHHHHHHHHHhc
Confidence 00 112345679999999999999999999999999999999
Q ss_pred hCCCCCCC---cchHHHHHHHHHHHccC
Q 000916 1083 THPQKALP---PVLEASMYAMASILSYD 1107 (1225)
Q Consensus 1083 ~~P~~~~~---~~~~~~~~ai~~lls~d 1107 (1225)
.+|...++ ..+......++.++...
T Consensus 894 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (924)
T KOG0920|consen 894 RSPCASLPDSSGKGSESPSLIANLLVGE 921 (924)
T ss_pred cCccccccccccccccchhhhhhhhhhh
Confidence 99997762 23455777777777654
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-151 Score=1321.67 Aligned_cols=625 Identities=37% Similarity=0.613 Sum_probs=564.5
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHH
Q 000916 178 LRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISV 257 (1225)
Q Consensus 178 ~~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~ 257 (1225)
...+.++|..|||++++++|+++|++|||+||.|||||||||||||||+|.+|...+ +|.|||||||||+++|+|||+
T Consensus 40 ~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g--~I~~TQPRRVAavslA~RVAe 117 (674)
T KOG0922|consen 40 NLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSG--KIACTQPRRVAAVSLAKRVAE 117 (674)
T ss_pred ccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCC--cEEeecCchHHHHHHHHHHHH
Confidence 345778999999999999999999999999999999999999999999999997543 499999999999999999999
Q ss_pred HhCCccCCeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHH
Q 000916 258 ERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFML 337 (1225)
Q Consensus 258 Erge~lG~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL 337 (1225)
|+|+.+|+.|||+||||+.++..|+|+|+|+|+|||+++.| |.|++||+|||||||||+++||+||
T Consensus 118 E~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~D--------------p~LskYsvIIlDEAHERsl~TDiLl 183 (674)
T KOG0922|consen 118 EMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKD--------------PLLSKYSVIILDEAHERSLHTDILL 183 (674)
T ss_pred HhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcC--------------CccccccEEEEechhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999988 5899999999999999999999999
Q ss_pred HHHHHhCcCCCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcch
Q 000916 338 AIIRDMLPSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPEL 417 (1225)
Q Consensus 338 ~lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~ 417 (1225)
++||.++.+|++||||+||||+|+++|++||++||++.||||+|||+++|+...
T Consensus 184 GlLKki~~~R~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p-------------------------- 237 (674)
T KOG0922|consen 184 GLLKKILKKRPDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEP-------------------------- 237 (674)
T ss_pred HHHHHHHhcCCCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCC--------------------------
Confidence 999999999999999999999999999999999999999999999999998521
Q ss_pred hhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccch
Q 000916 418 TEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRT 497 (1225)
Q Consensus 418 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~ 497 (1225)
...+++++
T Consensus 238 ---~~dYv~a~--------------------------------------------------------------------- 245 (674)
T KOG0922|consen 238 ---TADYVDAA--------------------------------------------------------------------- 245 (674)
T ss_pred ---chhhHHHH---------------------------------------------------------------------
Confidence 00011111
Q ss_pred hhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHH
Q 000916 498 ALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKT 577 (1225)
Q Consensus 498 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l 577 (1225)
...+..||..+++|+|||||+|.+||+.+
T Consensus 246 ---------------------------------------------------~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 246 ---------------------------------------------------LITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred ---------------------------------------------------HHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 12234677778999999999999999999
Q ss_pred HHHHHcCC-CCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCC
Q 000916 578 RDRLLANP-FFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNN 656 (1225)
Q Consensus 578 ~~~L~~~~-~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~ 656 (1225)
++.|.+.. ...+.....++||||.||.++|.+||.++|+|.|||||||||||||||||+|+||||+|++|++.|||.+|
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccC
Confidence 99997641 11222122899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCHhhHHhhcCccCCCcceEEEEecCHHHHhcCCCCCCCcccccChhhHHHHHhhcCCCCChhhhhhhcCCC
Q 000916 657 VSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKTLDP 736 (1225)
Q Consensus 657 ~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~~~m~~~~~PEI~R~pL~~l~L~~K~l~~~~~i~~fL~~~ldP 736 (1225)
+++|..+|||||+|.||+|||||++||.||||||+..|+.|++.++|||+|++|...+|++|+|+.+ ++..| +|+||
T Consensus 355 ~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~-d~l~F--~f~d~ 431 (674)
T KOG0922|consen 355 LDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGIN-DPLRF--PFIDP 431 (674)
T ss_pred ccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCC-CcccC--CCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 67778 99999
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCCcccc-cccccccccCchhhhHHHHHHhhcCChhHHHHHhhccCCCCCccCCCChhHH
Q 000916 737 PVSVTIRNAIIVLQDIGALSLDEKVTE-LGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYRDPFTLPISPNEK 815 (1225)
Q Consensus 737 P~~~av~~Al~~L~~lgALd~~e~LT~-LG~~La~LPvdp~lgKmLl~g~~~~CldpiltIaA~ls~~~pF~~P~~~~~~ 815 (1225)
|+++++..|++.|+.+||||+++.||. +|+.|+.||++|.++||||.+..++|+++++||||+|++.++|..|.+...
T Consensus 432 P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~- 510 (674)
T KOG0922|consen 432 PPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKA- 510 (674)
T ss_pred CChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhh-
Confidence 999999999999999999999999998 999999999999999999999999999999999999999999999875322
Q ss_pred HHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhhcCchHHHHHHhccchhHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 000916 816 KRATAAKFELASLYGGQSDQLAVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVSSC 895 (1225)
Q Consensus 816 ~~a~~~k~~~~~~~~~~SDhl~~l~af~~w~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~~gfv~~~~~~~ 895 (1225)
+++..+|.+|. +..+||+++|++|+.|.. ++...+||++|||+.++|+.+.++|+||..++.+.++.. .++
T Consensus 511 ~~a~~~~~kf~---~~eGDh~tlL~vy~~~~~---~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~---~s~ 581 (674)
T KOG0922|consen 511 EDADRKRAKFA---NPEGDHLTLLNVYESWKE---NGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPV---SSC 581 (674)
T ss_pred hhhhHHHHhhc---CcccCHHHHHHHHHHHHh---cCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCc---cCC
Confidence 24666777665 678899999999999986 456789999999999999999999999999998887643 222
Q ss_pred CCCCCChHHHHHHHHhccCccceeecCCCCCCceEEEecCCcEEEECCCCcCCccCCCCCCCCCeEEEEeeccccCceEE
Q 000916 896 SHNARVPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVYDEITRGDGGMHV 975 (1225)
Q Consensus 896 n~ns~~~~lika~L~aGlyPnVAr~~~~~~~~~~~v~t~~~~~V~iHPsSvl~~~~~~~~~~~~wvvy~E~~~t~~k~~i 975 (1225)
..|...|+.|||+|||.|+|++.++ ++|+++ .+|+.|+|||||++|. .+++||+|+|++.| +|.|+
T Consensus 582 ---~~d~~~i~k~l~aGff~N~A~~~~~--~~Yrti--~~~~~v~IHPSS~l~~------~~p~~viy~el~~T-tk~Y~ 647 (674)
T KOG0922|consen 582 ---GGDMEKIRKCLCAGFFRNVAERDYQ--DGYRTI--RGGQPVYIHPSSVLFR------RKPEWVIYHELLQT-TKEYM 647 (674)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHhhcC--CCeEEc--cCCcEEEEechHHhhc------CCCCEEEEEEEeec-chHhH
Confidence 3456779999999999999998743 336654 4589999999999997 23899999999997 79999
Q ss_pred eeccccChhhHHhhccccc
Q 000916 976 RNCTVVGPLPLLLLATEIA 994 (1225)
Q Consensus 976 r~~T~V~p~~LlLfgg~~~ 994 (1225)
|++|.|.+.||+.++++++
T Consensus 648 r~Vt~i~~~wL~e~ap~~~ 666 (674)
T KOG0922|consen 648 RNVTAIDPEWLLELAPHFF 666 (674)
T ss_pred hheeecCHHHHHHhCchHh
Confidence 9999999999999998863
No 3
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-146 Score=1262.40 Aligned_cols=625 Identities=34% Similarity=0.556 Sum_probs=559.8
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHH
Q 000916 178 LRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISV 257 (1225)
Q Consensus 178 ~~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~ 257 (1225)
...+.+.|+.||||.+|+++|.+|++|||+||.|+||||||||+||||+|.++.++. .+|.||||||+||+|||.|||+
T Consensus 254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~g-k~IgcTQPRRVAAmSVAaRVA~ 332 (902)
T KOG0923|consen 254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGG-KKIGCTQPRRVAAMSVAARVAE 332 (902)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCC-ceEeecCcchHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999998764 3599999999999999999999
Q ss_pred HhCCccCCeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHH
Q 000916 258 ERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFML 337 (1225)
Q Consensus 258 Erge~lG~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL 337 (1225)
|||+++|..|||+||||++++.+|.|.|||+|||||+++.+ |+|+.||+|||||||||++.||+|+
T Consensus 333 EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~e--------------pdLasYSViiiDEAHERTL~TDILf 398 (902)
T KOG0923|consen 333 EMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSE--------------PDLASYSVIIVDEAHERTLHTDILF 398 (902)
T ss_pred HhCcccccccceEEEeccccCcceeeeeecchhHHHHHhcc--------------ccccceeEEEeehhhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999998 5899999999999999999999999
Q ss_pred HHHHHhCcCCCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcch
Q 000916 338 AIIRDMLPSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPEL 417 (1225)
Q Consensus 338 ~lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~ 417 (1225)
+++|++.+.||+|||++||||+|+++|+.||++|||+.||||.|||++||.+..
T Consensus 399 gLvKDIar~RpdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~P-------------------------- 452 (902)
T KOG0923|consen 399 GLVKDIARFRPDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAP-------------------------- 452 (902)
T ss_pred HHHHHHHhhCCcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCC--------------------------
Confidence 999999999999999999999999999999999999999999999999996531
Q ss_pred hhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccch
Q 000916 418 TEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRT 497 (1225)
Q Consensus 418 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~ 497 (1225)
...++|.||.
T Consensus 453 ---EAdYldAai~------------------------------------------------------------------- 462 (902)
T KOG0923|consen 453 ---EADYLDAAIV------------------------------------------------------------------- 462 (902)
T ss_pred ---chhHHHHHHh-------------------------------------------------------------------
Confidence 1122333221
Q ss_pred hhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHH
Q 000916 498 ALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKT 577 (1225)
Q Consensus 498 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l 577 (1225)
.+..||..++.|+|||||+|.++|+.+
T Consensus 463 -----------------------------------------------------tVlqIH~tqp~GDILVFltGQeEIEt~ 489 (902)
T KOG0923|consen 463 -----------------------------------------------------TVLQIHLTQPLGDILVFLTGQEEIETV 489 (902)
T ss_pred -----------------------------------------------------hheeeEeccCCccEEEEeccHHHHHHH
Confidence 122466667889999999999999999
Q ss_pred HHHHHcC--CCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCC
Q 000916 578 RDRLLAN--PFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYN 655 (1225)
Q Consensus 578 ~~~L~~~--~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~ 655 (1225)
.+.|.+. .+-.....+.|+|+|++||++.|.+||++.|+|.|||||||||||||||||||+||||+|++|+++|+|++
T Consensus 490 ~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprt 569 (902)
T KOG0923|consen 490 KENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRT 569 (902)
T ss_pred HHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCc
Confidence 8888753 22233467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCHhhHHhhcCccCCCcceEEEEecCHHHHh-cCCCCCCCcccccChhhHHHHHhhcCCCCChhhhhhhcC
Q 000916 656 NVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAA-SLPDFQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKTL 734 (1225)
Q Consensus 656 ~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~~-~m~~~~~PEI~R~pL~~l~L~~K~l~~~~~i~~fL~~~l 734 (1225)
||++|..+|||||||.||+|||||++||.||||||...|. .+.+.++|||+|++|..++|.+|+||.+ ++.+| +|+
T Consensus 570 GmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~-Dl~~F--dFm 646 (902)
T KOG0923|consen 570 GMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIH-DLIHF--DFL 646 (902)
T ss_pred CceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcc-hhccc--ccC
Confidence 9999999999999999999999999999999999998887 5777888999999999999999999974 57777 999
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCCcccccccccccccCchhhhHHHHHHhhcCChhHHHHHhhccCCC-CCccCCCChh
Q 000916 735 DPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYR-DPFTLPISPN 813 (1225)
Q Consensus 735 dPP~~~av~~Al~~L~~lgALd~~e~LT~LG~~La~LPvdp~lgKmLl~g~~~~CldpiltIaA~ls~~-~pF~~P~~~~ 813 (1225)
|||+.+++..|++.|+.||||+..++||.+|+.|++|||||+|+|||+.+..++|.++|+|||||||.. ++|..|.+
T Consensus 647 DpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~-- 724 (902)
T KOG0923|consen 647 DPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKD-- 724 (902)
T ss_pred CCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchh--
Confidence 999999999999999999999999999999999999999999999999999999999999999999874 79998864
Q ss_pred HHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhhcCchHHHHHHhccchhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000916 814 EKKRATAAKFELASLYGGQSDQLAVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVS 893 (1225)
Q Consensus 814 ~~~~a~~~k~~~~~~~~~~SDhl~~l~af~~w~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~~gfv~~~~~ 893 (1225)
...-|+.+++.|. ++.|||+++|++|+.|.+. +.+.+||.+||+++.+|..+.++|.||..+|.+.+....
T Consensus 725 ~~v~ad~a~~~f~---~~~gDhi~~L~vyn~w~es---~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~--- 795 (902)
T KOG0923|consen 725 KQVHADNARKNFE---EPVGDHIVLLNVYNQWKES---KYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLS--- 795 (902)
T ss_pred hhhhhhhhhhccC---CCCcchhhhhHHHHHHhhc---chhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccccc---
Confidence 3345666766664 5799999999999999875 456899999999999999999999999999998775221
Q ss_pred CCCCCCCChHHHHHHHHhccCccceeecCCCCCCceEEEecCCcEEEECCCCcCCccCCCCCCCCCeEEEEeeccccCce
Q 000916 894 SCSHNARVPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVYDEITRGDGGM 973 (1225)
Q Consensus 894 ~~n~ns~~~~lika~L~aGlyPnVAr~~~~~~~~~~~v~t~~~~~V~iHPsSvl~~~~~~~~~~~~wvvy~E~~~t~~k~ 973 (1225)
.+..+...|+.++.+|||||+|++.. .+.|+++ ...+.|++||.|++|.. .|.||||+|++.| ++-
T Consensus 796 ---s~~~~~~~irk~i~aGff~h~a~l~~--~g~y~tv--k~~~tv~~hp~S~l~~~------~P~wvvy~eLv~t-ske 861 (902)
T KOG0923|consen 796 ---SNQNDLDKIRKAITAGFFYHTAKLSK--GGHYRTV--KHPQTVSIHPNSGLFEQ------LPRWVVYHELVLT-SKE 861 (902)
T ss_pred ---CChHHHHHHHHHHhccccccceeccC--CCcceee--ccCcceeecCccccccc------CCceEEEeehhcC-hHH
Confidence 11224557899999999999999854 2335543 45667999999999872 2589999999998 789
Q ss_pred EEeeccccChhhHHhhccccc
Q 000916 974 HVRNCTVVGPLPLLLLATEIA 994 (1225)
Q Consensus 974 ~ir~~T~V~p~~LlLfgg~~~ 994 (1225)
|+|.++.+.+.||+..+++++
T Consensus 862 ~mr~~~e~e~~Wlie~aphyy 882 (902)
T KOG0923|consen 862 FMRQVIEIEEEWLIEVAPHYY 882 (902)
T ss_pred HHHHHHhhhhhHHHHhchhhh
Confidence 999999999999999999986
No 4
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-146 Score=1254.00 Aligned_cols=623 Identities=33% Similarity=0.531 Sum_probs=562.5
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHH
Q 000916 179 RQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVE 258 (1225)
Q Consensus 179 ~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~E 258 (1225)
+.+.++|+.|||+..|+++|+.|+.|+||||+||||||||||+||||++++++.+ +.|.||||||+|||+||.|||.|
T Consensus 346 k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~--GmIGcTQPRRvAAiSVAkrVa~E 423 (1042)
T KOG0924|consen 346 KSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADN--GMIGCTQPRRVAAISVAKRVAEE 423 (1042)
T ss_pred chHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccC--CeeeecCchHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999754 48999999999999999999999
Q ss_pred hCCccCCeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHH
Q 000916 259 RGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLA 338 (1225)
Q Consensus 259 rge~lG~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~ 338 (1225)
||..+|.+|||.||||+.++++|.|.|||+|||||+...| ..|..||+||+||||||++|+|+|++
T Consensus 424 M~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d--------------~~L~kYSviImDEAHERslNtDilfG 489 (1042)
T KOG0924|consen 424 MGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKD--------------RDLDKYSVIIMDEAHERSLNTDILFG 489 (1042)
T ss_pred hCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhh--------------hhhhheeEEEechhhhcccchHHHHH
Confidence 9999999999999999999999999999999999999987 48999999999999999999999999
Q ss_pred HHHHhCcCCCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchh
Q 000916 339 IIRDMLPSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELT 418 (1225)
Q Consensus 339 lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~ 418 (1225)
+||.++++|.|||||+||||||+++|++|||+||.++||||||||++.|.....
T Consensus 490 llk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~-------------------------- 543 (1042)
T KOG0924|consen 490 LLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPV-------------------------- 543 (1042)
T ss_pred HHHHHHHhhccceEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCch--------------------------
Confidence 999999999999999999999999999999999999999999999999975311
Q ss_pred hhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchh
Q 000916 419 EENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTA 498 (1225)
Q Consensus 419 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a 498 (1225)
++| ++.++..
T Consensus 544 eDY---Veaavkq------------------------------------------------------------------- 553 (1042)
T KOG0924|consen 544 EDY---VEAAVKQ------------------------------------------------------------------- 553 (1042)
T ss_pred HHH---HHHHHhh-------------------------------------------------------------------
Confidence 111 1111100
Q ss_pred hhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHH
Q 000916 499 LQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTR 578 (1225)
Q Consensus 499 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~ 578 (1225)
...|+....+|+||||++|.+||+..+
T Consensus 554 -----------------------------------------------------~v~Ihl~~~~GdilIfmtGqediE~t~ 580 (1042)
T KOG0924|consen 554 -----------------------------------------------------AVQIHLSGPPGDILIFMTGQEDIECTC 580 (1042)
T ss_pred -----------------------------------------------------heEeeccCCCCCEEEecCCCcchhHHH
Confidence 013555667899999999999999988
Q ss_pred HHHHcCC---CCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCC
Q 000916 579 DRLLANP---FFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYN 655 (1225)
Q Consensus 579 ~~L~~~~---~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~ 655 (1225)
..|..+- .+.....+.|+|+||+||.+-|.+||++++.|+|||||||||||||||||+|.||||||++|.++|++..
T Consensus 581 ~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~ 660 (1042)
T KOG0924|consen 581 DIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRI 660 (1042)
T ss_pred HHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccccc
Confidence 8775431 1222347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCHhhHHhhcCccCCCcceEEEEecCHHHH-hcCCCCCCCcccccChhhHHHHHhhcCCCCChhhhhhhcC
Q 000916 656 NVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRA-ASLPDFQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKTL 734 (1225)
Q Consensus 656 ~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~-~~m~~~~~PEI~R~pL~~l~L~~K~l~~~~~i~~fL~~~l 734 (1225)
||..|+.++||||+|.||+|||||++||.||||||+..| +.|.+.++|||+|++|..++|++|.|+. .++.+| +|+
T Consensus 661 G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV-~dll~F--dFm 737 (1042)
T KOG0924|consen 661 GMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGV-DDLLKF--DFM 737 (1042)
T ss_pred ccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcCh-hhhhCC--CcC
Confidence 999999999999999999999999999999999999655 5899999999999999999999999986 356677 999
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCCcccccccccccccCchhhhHHHHHHhhcCChhHHHHHhhccCCCCCccCCCChhH
Q 000916 735 DPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYRDPFTLPISPNE 814 (1225)
Q Consensus 735 dPP~~~av~~Al~~L~~lgALd~~e~LT~LG~~La~LPvdp~lgKmLl~g~~~~CldpiltIaA~ls~~~pF~~P~~~~~ 814 (1225)
|||+.+.+.+|+-.|..|||||..+.||+||+.|+.||+||.|+||||.|+-+||.++||+||+|||+...|+.|...
T Consensus 738 D~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker-- 815 (1042)
T KOG0924|consen 738 DPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKER-- 815 (1042)
T ss_pred CCCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998542
Q ss_pred HHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhhcCchHHHHHHhccchhHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 000916 815 KKRATAAKFELASLYGGQSDQLAVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVSS 894 (1225)
Q Consensus 815 ~~~a~~~k~~~~~~~~~~SDhl~~l~af~~w~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~~gfv~~~~~~ 894 (1225)
.+++..+|.+|. ...|||||+||+|++|.+. ..+..||.+|||+.++|+.+.++|+||+.+|+..++.
T Consensus 816 ~eead~ar~Kf~---~~~sDhLTlLNVf~qw~~~---~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~------ 883 (1042)
T KOG0924|consen 816 EEEADAAREKFQ---VPESDHLTLLNVFNQWRKN---KYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLP------ 883 (1042)
T ss_pred hhhhhhHHhhhc---CCCCchhhHHHHHHHHHhc---CCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCC------
Confidence 345666777665 6899999999999999864 3457899999999999999999999999999999872
Q ss_pred CCCCCCChHHHHHHHHhccCccceeecCCCCCCceEEEecCCcEEEECCCCcCCccCCCCCCCCCeEEEEeeccccCceE
Q 000916 895 CSHNARVPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVYDEITRGDGGMH 974 (1225)
Q Consensus 895 ~n~ns~~~~lika~L~aGlyPnVAr~~~~~~~~~~~v~t~~~~~V~iHPsSvl~~~~~~~~~~~~wvvy~E~~~t~~k~~ 974 (1225)
.+.+ .+|++|+.|||+|+|-|+|++. +-..|+...+|..++|||+|+|++. +.|+||||||++.| .+.|
T Consensus 884 l~S~-~dwdivrKCIcs~~fhn~Arlk----g~g~YV~~~tg~~c~lHPsS~L~g~-----y~p~Yivyhel~~T-~key 952 (1042)
T KOG0924|consen 884 LISS-DDWDIVRKCICSAYFHNAARLK----GIGEYVNLSTGIPCHLHPSSVLHGL-----YTPDYIVYHELLMT-TKEY 952 (1042)
T ss_pred cccC-chHHHHHHHHHHHHHHHHHHhc----cCceEEEccCCcceeecchHhhhcC-----CCCCeeeehHHHHh-HHHH
Confidence 2222 6899999999999999999984 3334577788999999999999983 55899999999998 6899
Q ss_pred EeeccccChhhHHhhccccc
Q 000916 975 VRNCTVVGPLPLLLLATEIA 994 (1225)
Q Consensus 975 ir~~T~V~p~~LlLfgg~~~ 994 (1225)
|++||.|+|.||+..||-++
T Consensus 953 m~cvT~v~~~wl~E~gp~~y 972 (1042)
T KOG0924|consen 953 MQCVTSVSPEWLAELGPMFY 972 (1042)
T ss_pred HHHHhhCCHHHHHHhCceeE
Confidence 99999999999999998775
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-137 Score=1150.23 Aligned_cols=627 Identities=33% Similarity=0.529 Sum_probs=566.8
Q ss_pred hhchhhHHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHH
Q 000916 173 EKDANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVA 252 (1225)
Q Consensus 173 ~~~~~~~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvA 252 (1225)
.-+++|.++++.|..||||.+|+++++.+.+||.+|++|+||||||||||||.+|.+.... ..|+||||||++|+|||
T Consensus 31 p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQprrvaamsva 108 (699)
T KOG0925|consen 31 PYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPRRVAAMSVA 108 (699)
T ss_pred cCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCchHHHHHHHH
Confidence 3477899999999999999999999999999999999999999999999999999987654 57999999999999999
Q ss_pred HHHHHHhCCccCCeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccc
Q 000916 253 ERISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRY 332 (1225)
Q Consensus 253 eRVa~Erge~lG~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~ 332 (1225)
.|||.||...+|+.|||.||||++.+++|-+.|||+|+|||+.+++ +.|..|++||+||+|||++-
T Consensus 109 ~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~--------------p~l~~y~viiLDeahERtlA 174 (699)
T KOG0925|consen 109 QRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSD--------------PLLGRYGVIILDEAHERTLA 174 (699)
T ss_pred HHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhC--------------cccccccEEEechhhhhhHH
Confidence 9999999999999999999999999999999999999999999998 48999999999999999999
Q ss_pred hhHHHHHHHHhCcCCCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCC
Q 000916 333 SDFMLAIIRDMLPSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPN 412 (1225)
Q Consensus 333 tD~LL~lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~ 412 (1225)
||+|+++||+++..|||||||+||||+++++|..||++||+++||| +|||+++|..++
T Consensus 175 TDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~--------------------- 232 (699)
T KOG0925|consen 175 TDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEP--------------------- 232 (699)
T ss_pred HHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCC---------------------
Confidence 9999999999999999999999999999999999999999999999 999999998642
Q ss_pred CCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhc
Q 000916 413 EDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKA 492 (1225)
Q Consensus 413 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~ 492 (1225)
.+.+++.|
T Consensus 233 --------erDylEaa---------------------------------------------------------------- 240 (699)
T KOG0925|consen 233 --------ERDYLEAA---------------------------------------------------------------- 240 (699)
T ss_pred --------ChhHHHHH----------------------------------------------------------------
Confidence 11111111
Q ss_pred cccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHH
Q 000916 493 KDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWE 572 (1225)
Q Consensus 493 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~ 572 (1225)
...+-.||..+.+|+|||||+|.+
T Consensus 241 --------------------------------------------------------irtV~qih~~ee~GDilvFLtgee 264 (699)
T KOG0925|consen 241 --------------------------------------------------------IRTVLQIHMCEEPGDILVFLTGEE 264 (699)
T ss_pred --------------------------------------------------------HHHHHHHHhccCCCCEEEEecCHH
Confidence 223345777788999999999999
Q ss_pred HHHHHHHHHHc--CCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCC-----CceEEEecchhccccCCCCeEEEEeCCC
Q 000916 573 DINKTRDRLLA--NPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPG-----CRKIILSTNIAETAITIDDVVYVIDSGR 645 (1225)
Q Consensus 573 eI~~l~~~L~~--~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g-----~rKIILATNIAEtSITI~dV~~VIDsG~ 645 (1225)
||+.+++.+.. ..+..+.+.+.|+||| +.+|.++|++.|.. .|||||+|||||||+|||+|+||||.|+
T Consensus 265 eIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf 340 (699)
T KOG0925|consen 265 EIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGF 340 (699)
T ss_pred HHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCch
Confidence 99999999863 2334556789999999 78899999998753 4999999999999999999999999999
Q ss_pred cccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHHHHh-cCCCCCCCcccccChhhHHHHHhhcCCCC
Q 000916 646 MKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAA-SLPDFQVPEIKRIPIEELCLQVKLLDPNC 724 (1225)
Q Consensus 646 ~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~~-~m~~~~~PEI~R~pL~~l~L~~K~l~~~~ 724 (1225)
.|+++|||+.++.+|...+||||+|.||+|||||++||.||||||+..|+ .|.+.+.|||+|.+|.+++|++|-++..
T Consensus 341 ~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~- 419 (699)
T KOG0925|consen 341 SKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGID- 419 (699)
T ss_pred hhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcc-
Confidence 99999999999999999999999999999999999999999999998887 7999999999999999999999999974
Q ss_pred ChhhhhhhcCCCCcHHHHHHHHHHHHHcCCCCCCCcccccccccccccCchhhhHHHHHHhhcCChhHHHHHhhccCCCC
Q 000916 725 NIEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYRD 804 (1225)
Q Consensus 725 ~i~~fL~~~ldPP~~~av~~Al~~L~~lgALd~~e~LT~LG~~La~LPvdp~lgKmLl~g~~~~CldpiltIaA~ls~~~ 804 (1225)
+...| +|+|||.++++.+|++.|..++|||++++||++|..|++||+||+++||||.++.|+|.+++|+|+|||++.+
T Consensus 420 dlvhf--dfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPn 497 (699)
T KOG0925|consen 420 DLVHF--DFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPN 497 (699)
T ss_pred cccCC--cCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCc
Confidence 46667 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCChhHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhhcCchHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q 000916 805 PFTLPISPNEKKRATAAKFELASLYGGQSDQLAVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIK 884 (1225)
Q Consensus 805 pF~~P~~~~~~~~a~~~k~~~~~~~~~~SDhl~~l~af~~w~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~ 884 (1225)
.|+.|.. +.++.|..+|..|+ +..|||++++|+|++|++. +...+||++||||+++|.++.++|.||.++|.+
T Consensus 498 cFvRp~~-~a~kaAdeak~~fa---H~dGDHlTLlnVYhAfkq~---~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R 570 (699)
T KOG0925|consen 498 CFVRPTS-SASKAADEAKETFA---HIDGDHLTLLNVYHAFKQN---NEDPNWCYDNFLNYRALKSADNVRQQLLRIMDR 570 (699)
T ss_pred cccCCCh-hHHHHHHHHHHHhc---cCCcchHHHHHHHHHHHhc---CCChhHHHHhcccHHHHHhHHHHHHHHHHHHHH
Confidence 9999964 45778888998887 7899999999999999864 356799999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCh-HHHHHHHHhccCccceeecCCCCCCceEEEecCCcEEEECCCCcCCccCCCCCCCCCeEEE
Q 000916 885 NGFIPEDVSSCSHNARVP-GIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVY 963 (1225)
Q Consensus 885 ~gfv~~~~~~~n~ns~~~-~lika~L~aGlyPnVAr~~~~~~~~~~~v~t~~~~~V~iHPsSvl~~~~~~~~~~~~wvvy 963 (1225)
.++... +...+|.+. --|+++|++|+|.+||+... ++ .++...+++.|.+||++++.. +++||+|
T Consensus 571 ~~L~~~---st~F~S~~y~~nirKALvsgyFmqVA~~~~---~~-~Ylt~kdnqvvqLhps~~l~~-------~PeWVly 636 (699)
T KOG0925|consen 571 FNLPLC---STDFGSRDYYVNIRKALVSGYFMQVAHLER---GG-HYLTVKDNQVVQLHPSTCLDH-------KPEWVLY 636 (699)
T ss_pred hcCccc---CCCCCChhHHHHHHHHHHHHHHHHHHhhcc---CC-ceEEEecCceEEeccccccCC-------CCCeEEE
Confidence 987432 223344443 34888999999999999753 33 456667899999999999864 4899999
Q ss_pred EeeccccCceEEeeccccChhhHHhhccccc
Q 000916 964 DEITRGDGGMHVRNCTVVGPLPLLLLATEIA 994 (1225)
Q Consensus 964 ~E~~~t~~k~~ir~~T~V~p~~LlLfgg~~~ 994 (1225)
+|++.| ++.|||.+|.|.|.||+.++++++
T Consensus 637 neFvlt-~~N~ir~vt~I~pewlv~laP~Yy 666 (699)
T KOG0925|consen 637 NEFVLT-TKNFIRTVTDIRPEWLVELAPQYY 666 (699)
T ss_pred eeEEee-ccceeeeecccCHHHHHHhchhhc
Confidence 999998 689999999999999999999875
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=8.4e-127 Score=1213.36 Aligned_cols=622 Identities=30% Similarity=0.463 Sum_probs=551.4
Q ss_pred HHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCC
Q 000916 182 VEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGE 261 (1225)
Q Consensus 182 ~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge 261 (1225)
..+|.+|||+.++++|+++|++|+||||+|+||||||||+||++++.+. +..++|+||||||++|+++|+|||+|+++
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~--g~~g~I~~TQPRRlAArsLA~RVA~El~~ 144 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGR--GVKGLIGHTQPRRLAARTVANRIAEELET 144 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCC--CCCCceeeCCCcHHHHHHHHHHHHHHHhh
Confidence 5678899999999999999999999999999999999999999998753 34578999999999999999999999999
Q ss_pred ccCCeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHH
Q 000916 262 NIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIR 341 (1225)
Q Consensus 262 ~lG~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk 341 (1225)
.+|..|||+||++++.+.+|+|+|||+|+||+++..+ +.|++|+||||||||||++++||++++||
T Consensus 145 ~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d--------------~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk 210 (1294)
T PRK11131 145 ELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQD--------------RLLMQYDTIIIDEAHERSLNIDFILGYLK 210 (1294)
T ss_pred hhcceeceeecCccccCCCCCEEEEChHHHHHHHhcC--------------CccccCcEEEecCccccccccchHHHHHH
Confidence 9999999999999999999999999999999999977 47999999999999999999999999999
Q ss_pred HhCcCCCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhh
Q 000916 342 DMLPSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEEN 421 (1225)
Q Consensus 342 ~ll~~~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 421 (1225)
++++++|++|+|+||||+|.+.|++||+++|+|.|+|++|||+++|+...- . . +..
T Consensus 211 ~lL~~rpdlKvILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~-------~-------------~----~~~ 266 (1294)
T PRK11131 211 ELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVE-------E-------------A----DDT 266 (1294)
T ss_pred HhhhcCCCceEEEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeeccc-------c-------------c----chh
Confidence 999999999999999999999999999999999999999999999975210 0 0 000
Q ss_pred hhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhh
Q 000916 422 KSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQL 501 (1225)
Q Consensus 422 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~ 501 (1225)
.
T Consensus 267 ---------------~---------------------------------------------------------------- 267 (1294)
T PRK11131 267 ---------------E---------------------------------------------------------------- 267 (1294)
T ss_pred ---------------h----------------------------------------------------------------
Confidence 0
Q ss_pred ccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHH
Q 000916 502 GEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRL 581 (1225)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L 581 (1225)
.+.+ ..+...+..++. ..+|+|||||||.+||+.+++.|
T Consensus 268 ---------~d~l-------------------------------~~ll~~V~~l~~-~~~GdILVFLpg~~EIe~lae~L 306 (1294)
T PRK11131 268 ---------RDQL-------------------------------QAIFDAVDELGR-EGPGDILIFMSGEREIRDTADAL 306 (1294)
T ss_pred ---------HHHH-------------------------------HHHHHHHHHHhc-CCCCCEEEEcCCHHHHHHHHHHH
Confidence 0000 011122333442 45799999999999999999999
Q ss_pred HcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCccccc
Q 000916 582 LANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQ 661 (1225)
Q Consensus 582 ~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~ 661 (1225)
.... ...+.|+||||+|++++|.++|++ .|.|||||||||||||||||||+||||+|++|++.||+.++++.|.
T Consensus 307 ~~~~----~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp 380 (1294)
T PRK11131 307 NKLN----LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLP 380 (1294)
T ss_pred HhcC----CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCC
Confidence 8653 234679999999999999999996 5889999999999999999999999999999999999999999999
Q ss_pred ccccCHhhHHhhcCccCCCcceEEEEecCHHHHhcCCCCCCCcccccChhhHHHHHhhcCCCCChhhhhhhcCCCCcHHH
Q 000916 662 SSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKTLDPPVSVT 741 (1225)
Q Consensus 662 ~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~~~m~~~~~PEI~R~pL~~l~L~~K~l~~~~~i~~fL~~~ldPP~~~a 741 (1225)
..||||++|.||+|||||+++|+||||||+.+|+.|++|+.|||+|++|+++||++|.++. +++.+| .|++||+..+
T Consensus 381 ~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl-~di~~F--~fldpP~~~~ 457 (1294)
T PRK11131 381 IEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGL-GDIAAF--PFVEAPDKRN 457 (1294)
T ss_pred eeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCC-CCccee--eCCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987 468888 7999999999
Q ss_pred HHHHHHHHHHcCCCCCC-----CcccccccccccccCchhhhHHHHHHhhcCChhHHHHHhhccCCCCCccCCCChhHHH
Q 000916 742 IRNAIIVLQDIGALSLD-----EKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYRDPFTLPISPNEKK 816 (1225)
Q Consensus 742 v~~Al~~L~~lgALd~~-----e~LT~LG~~La~LPvdp~lgKmLl~g~~~~CldpiltIaA~ls~~~pF~~P~~~~~~~ 816 (1225)
|.+|++.|+.+||||.+ ++||++|++|+.|||||++|||||+|+.|+|++++++|||+|++++||..|.+ .+.
T Consensus 458 i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~--~~~ 535 (1294)
T PRK11131 458 IQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMD--KQQ 535 (1294)
T ss_pred HHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCch--hHH
Confidence 99999999999999864 46999999999999999999999999999999999999999999999999864 456
Q ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhh---cCchHHHHHHhccchhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000916 817 RATAAKFELASLYGGQSDQLAVIAAFECWKNAKQ---RGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVS 893 (1225)
Q Consensus 817 ~a~~~k~~~~~~~~~~SDhl~~l~af~~w~~~~~---~~~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~~gfv~~~~~ 893 (1225)
++..+++.|+ +..||||+++|+|+.|++... .+..+.||++||||+.+|+++.++|.||.+++++.|+..
T Consensus 536 ~a~~~~~~f~---~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~---- 608 (1294)
T PRK11131 536 ASDEKHRRFA---DKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPV---- 608 (1294)
T ss_pred HHHHHHHhhC---CCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCC----
Confidence 6777777776 689999999999999986432 233468999999999999999999999999999999843
Q ss_pred CCCCCCCChHHHHHHHHhccCccceeecCCCCCCceEEEecCCcEEEECCCCcCCccCCCCCCCCCeEEEEeeccccCce
Q 000916 894 SCSHNARVPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVYDEITRGDGGM 973 (1225)
Q Consensus 894 ~~n~ns~~~~lika~L~aGlyPnVAr~~~~~~~~~~~v~t~~~~~V~iHPsSvl~~~~~~~~~~~~wvvy~E~~~t~~k~ 973 (1225)
+.+..++..|+.|||+|||+|||+.... +.. +.+..+.+|+|||+|++++ .+++||||+|++.| +++
T Consensus 609 --~~~~~~~~~i~~all~G~~~nva~~~~~---~~~-y~~~~~~~~~ihP~S~L~~------~~p~wvv~~Elv~T-sr~ 675 (1294)
T PRK11131 609 --NSEPAEYREIHTALLTGLLSHIGMKDAE---KQE-YTGARNARFSIFPGSGLFK------KPPKWVMVAELVET-SRL 675 (1294)
T ss_pred --CCCcccHHHHHHHHHhhcHHHHeeccCC---CCe-EEccCCcEEEEcCCccccC------CCCCEEEEEeeecc-Chh
Confidence 2234568889999999999999987532 112 3445688999999999986 24789999999998 799
Q ss_pred EEeeccccChhhHHhhccccc
Q 000916 974 HVRNCTVVGPLPLLLLATEIA 994 (1225)
Q Consensus 974 ~ir~~T~V~p~~LlLfgg~~~ 994 (1225)
|+|+||.|.|.||..+++++.
T Consensus 676 y~r~va~I~p~Wl~~~a~~l~ 696 (1294)
T PRK11131 676 WGRIAARIEPEWIEPLAQHLI 696 (1294)
T ss_pred hhhhhcccCHHHHHHHHHHhc
Confidence 999999999999999998873
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.3e-126 Score=1171.85 Aligned_cols=638 Identities=37% Similarity=0.560 Sum_probs=546.0
Q ss_pred chhhHHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHH
Q 000916 175 DANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAER 254 (1225)
Q Consensus 175 ~~~~~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeR 254 (1225)
++.+..+...|..|||+..+++|+++|++|+||||+||||||||||+|||+||.++ +...+|+||||||+||+++|+|
T Consensus 36 ~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~R 113 (845)
T COG1643 36 SANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAER 113 (845)
T ss_pred ccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999998 4456999999999999999999
Q ss_pred HHHHhCCccCCeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchh
Q 000916 255 ISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSD 334 (1225)
Q Consensus 255 Va~Erge~lG~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD 334 (1225)
||+|+|+++|++|||+||||++++++|+|.|||+|||||+++.| +.|++|++|||||+|||++++|
T Consensus 114 vAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D--------------~~Ls~ys~vIiDEaHERSl~tD 179 (845)
T COG1643 114 VAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQND--------------PLLSGYSVVIIDEAHERSLNTD 179 (845)
T ss_pred HHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhC--------------cccccCCEEEEcchhhhhHHHH
Confidence 99999999999999999999999999999999999999999998 5899999999999999999999
Q ss_pred HHHHHHHHhCcCCC-CceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCC
Q 000916 335 FMLAIIRDMLPSYP-HLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNE 413 (1225)
Q Consensus 335 ~LL~lLk~ll~~~~-~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~ 413 (1225)
|+|++||+++..++ |||||+||||+|+++|++||++||+++|+||+|||+++|+++..
T Consensus 180 ilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~--------------------- 238 (845)
T COG1643 180 ILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAE--------------------- 238 (845)
T ss_pred HHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCC---------------------
Confidence 99999999888776 79999999999999999999999999999999999999986420
Q ss_pred CcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhcc
Q 000916 414 DPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAK 493 (1225)
Q Consensus 414 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~ 493 (1225)
.++. +++++
T Consensus 239 -----~d~~--l~~ai---------------------------------------------------------------- 247 (845)
T COG1643 239 -----ADYI--LLDAI---------------------------------------------------------------- 247 (845)
T ss_pred -----cchh--HHHHH----------------------------------------------------------------
Confidence 0000 11111
Q ss_pred ccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHH
Q 000916 494 DGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWED 573 (1225)
Q Consensus 494 ~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~e 573 (1225)
...+ .++.....|+|||||||.+|
T Consensus 248 -------------------------------------------------------~~~v-~~~~~~~~GdILvFLpG~~E 271 (845)
T COG1643 248 -------------------------------------------------------VAAV-DIHLREGSGSILVFLPGQRE 271 (845)
T ss_pred -------------------------------------------------------HHHH-HHhccCCCCCEEEECCcHHH
Confidence 0011 22334568999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccC
Q 000916 574 INKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDP 653 (1225)
Q Consensus 574 I~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~ 653 (1225)
|+.+++.|.+..+ ...+.|+||||.|+.++|.+||++.|.|+|||||||||||||||||||+||||+|++|++.||+
T Consensus 272 I~~~~~~L~~~~l---~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~ 348 (845)
T COG1643 272 IERTAEWLEKAEL---GDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDP 348 (845)
T ss_pred HHHHHHHHHhccc---cCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccc
Confidence 9999999987221 2468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHHHHhcCCCCCCCcccccChhhHHHHHhhcCCCCChhhhhhhc
Q 000916 654 YNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKT 733 (1225)
Q Consensus 654 ~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~~~m~~~~~PEI~R~pL~~l~L~~K~l~~~~~i~~fL~~~ 733 (1225)
.++++.|.++|||||||.||+|||||++||+||||||+..|..|++++.|||+|++|+.++|++|.+|...++..| .|
T Consensus 349 ~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f--~f 426 (845)
T COG1643 349 RTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPF--PF 426 (845)
T ss_pred ccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccC--cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999962267777 99
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCCcccccccccccccCchhhhHHHHHHhhcCChhHHHHHhhccCCCC---CccCCC
Q 000916 734 LDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYRD---PFTLPI 810 (1225)
Q Consensus 734 ldPP~~~av~~Al~~L~~lgALd~~e~LT~LG~~La~LPvdp~lgKmLl~g~~~~CldpiltIaA~ls~~~---pF~~P~ 810 (1225)
+|||+..++..|++.|..+||||.++.||++|+.|+.||+||++|+||+.|..++|++++++|||+|+.++ .|..+.
T Consensus 427 ld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~ 506 (845)
T COG1643 427 LDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDV 506 (845)
T ss_pred CCCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 688776
Q ss_pred ChhH-HHHHHHHH-HHHhhhccCCCcHHHHHHHHHHHHHHhhc-C--chHHHHHHhccchhHHHHHHHHHHHHHHHHHH-
Q 000916 811 SPNE-KKRATAAK-FELASLYGGQSDQLAVIAAFECWKNAKQR-G--QEAWFCSQYFVSSGVMNMLLGMRKQLQTELIK- 884 (1225)
Q Consensus 811 ~~~~-~~~a~~~k-~~~~~~~~~~SDhl~~l~af~~w~~~~~~-~--~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~- 884 (1225)
+... +..+..++ .++.......+||++++++|..|...+.. + ...+||..++++.++|.++..++.|++.....
T Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~ 586 (845)
T COG1643 507 KLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSAL 586 (845)
T ss_pred chhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhcc
Confidence 4322 11222233 22221112679999999999999876521 1 24689999999999999999999999888776
Q ss_pred cCCCCCCCC-------------CCCCCCCChHHHHHHHHhccCccceeecCCCCCCceEEEecCCcEEEECCCCcCCccC
Q 000916 885 NGFIPEDVS-------------SCSHNARVPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLS 951 (1225)
Q Consensus 885 ~gfv~~~~~-------------~~n~ns~~~~lika~L~aGlyPnVAr~~~~~~~~~~~v~t~~~~~V~iHPsSvl~~~~ 951 (1225)
.|.+..... .+-.+. .|+.++.++++|++.|++.+... .+.++...++..|++||+|+...
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~l~a~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~v~~~-- 660 (845)
T COG1643 587 AGRILAAAEIDEDEWAAQHLPEHCYSEP-IWDDIRGALAAGRKLNIAQLQLD---GRPYVTLSDNTPVFAHPSSVRLG-- 660 (845)
T ss_pred ccchhhhcccCcchhhhhhhhhhhccch-hHHHHhhhhhhheecceeeeecc---ccccccCCCCceeEecchhHhhc--
Confidence 443221110 011222 57789999999999999998652 23344445678999999997221
Q ss_pred CCCCCCCCeEEEEeeccccCceEEe-----------eccccChhhHHhhcc
Q 000916 952 FKKTDDCPLMVYDEITRGDGGMHVR-----------NCTVVGPLPLLLLAT 991 (1225)
Q Consensus 952 ~~~~~~~~wvvy~E~~~t~~k~~ir-----------~~T~V~p~~LlLfgg 991 (1225)
...++|++|++.+++ .+-|++ .++.+.+.||.-+..
T Consensus 661 ---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~ 707 (845)
T COG1643 661 ---LVLLEWIKYAEFLRT-RKGYLREGRGERWPDVQTLIELLKLWLKEQVK 707 (845)
T ss_pred ---ccCcchHHHHHHHHH-HHHHHhhcccccCcccchHhhhHHHhhhhhcc
Confidence 134789999999997 578998 477777788776554
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.3e-123 Score=1182.67 Aligned_cols=622 Identities=31% Similarity=0.488 Sum_probs=549.9
Q ss_pred HHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhC
Q 000916 181 IVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERG 260 (1225)
Q Consensus 181 ~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erg 260 (1225)
+..++..|||+.++++|+++|++|+||||+|+||||||||+||++++.+++ ..++|+||||||+||+++|+|||+|+|
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~--~~~~I~~tQPRRlAA~svA~RvA~elg 136 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRG--SHGLIGHTQPRRLAARTVAQRIAEELG 136 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCC--CCceEecCCccHHHHHHHHHHHHHHhC
Confidence 466788999999999999999999999999999999999999999997543 456999999999999999999999999
Q ss_pred CccCCeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHH
Q 000916 261 ENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAII 340 (1225)
Q Consensus 261 e~lG~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lL 340 (1225)
+.+|.+|||+||++++.+.+|+|+|||+|+||++++.+ +.|++|+||||||||||++++||+|++|
T Consensus 137 ~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d--------------~~L~~~~~IIIDEaHERsL~~D~LL~lL 202 (1283)
T TIGR01967 137 TPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQD--------------RFLSRYDTIIIDEAHERSLNIDFLLGYL 202 (1283)
T ss_pred CCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhC--------------cccccCcEEEEcCcchhhccchhHHHHH
Confidence 99999999999999999999999999999999999987 4799999999999999999999999999
Q ss_pred HHhCcCCCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhh
Q 000916 341 RDMLPSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEE 420 (1225)
Q Consensus 341 k~ll~~~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 420 (1225)
|+++..+|++|+|+||||+|.+.|++||+++|+|.|+|++|||+++|..... . .. ++
T Consensus 203 k~il~~rpdLKlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~-------~------------~~----~~ 259 (1283)
T TIGR01967 203 KQLLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVE-------E------------QE----DD 259 (1283)
T ss_pred HHHHhhCCCCeEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccc-------c------------cc----ch
Confidence 9999999999999999999999999999999999999999999999864200 0 00 00
Q ss_pred hhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhh
Q 000916 421 NKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQ 500 (1225)
Q Consensus 421 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~ 500 (1225)
.
T Consensus 260 ~------------------------------------------------------------------------------- 260 (1283)
T TIGR01967 260 D------------------------------------------------------------------------------- 260 (1283)
T ss_pred h-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHH
Q 000916 501 LGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDR 580 (1225)
Q Consensus 501 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~ 580 (1225)
. +. .+.+.+++..++.. .+|+|||||||..||+.+.+.
T Consensus 261 -------~---~~-------------------------------~~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~ 298 (1283)
T TIGR01967 261 -------L---DQ-------------------------------LEAILDAVDELFAE-GPGDILIFLPGEREIRDAAEI 298 (1283)
T ss_pred -------h---hH-------------------------------HHHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHH
Confidence 0 00 00122233334333 569999999999999999999
Q ss_pred HHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccc
Q 000916 581 LLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTL 660 (1225)
Q Consensus 581 L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L 660 (1225)
|.... ...+.|+||||+|+.++|.++|++. +.|||||||||||||||||||+||||+|++|++.||+.++++.|
T Consensus 299 L~~~~----~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L 372 (1283)
T TIGR01967 299 LRKRN----LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRL 372 (1283)
T ss_pred HHhcC----CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcccc
Confidence 98653 2347899999999999999999864 45899999999999999999999999999999999999999999
Q ss_pred cccccCHhhHHhhcCccCCCcceEEEEecCHHHHhcCCCCCCCcccccChhhHHHHHhhcCCCCChhhhhhhcCCCCcHH
Q 000916 661 QSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKTLDPPVSV 740 (1225)
Q Consensus 661 ~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~~~m~~~~~PEI~R~pL~~l~L~~K~l~~~~~i~~fL~~~ldPP~~~ 740 (1225)
.+.|||||+|.||+|||||++||+||||||+..|+.+++++.|||+|++|.++||++|.++. +++.+| .|+|||+..
T Consensus 373 ~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~-~di~~f--~fldpP~~~ 449 (1283)
T TIGR01967 373 PIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRL-GDIAAF--PFIEAPDPR 449 (1283)
T ss_pred CCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCC-CCcccc--cCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 468888 899999999
Q ss_pred HHHHHHHHHHHcCCCCCCC---cccccccccccccCchhhhHHHHHHhhcCChhHHHHHhhccCCCCCccCCCChhHHHH
Q 000916 741 TIRNAIIVLQDIGALSLDE---KVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYRDPFTLPISPNEKKR 817 (1225)
Q Consensus 741 av~~Al~~L~~lgALd~~e---~LT~LG~~La~LPvdp~lgKmLl~g~~~~CldpiltIaA~ls~~~pF~~P~~~~~~~~ 817 (1225)
+|.+|++.|..+||||.++ .||++|+.|+.|||||++|||||.|+.|+|++++++|||+|+.++||..|.+ .+.+
T Consensus 450 ~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~--~~~~ 527 (1283)
T TIGR01967 450 AIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPME--KQQA 527 (1283)
T ss_pred HHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcch--hHHH
Confidence 9999999999999999998 7999999999999999999999999999999999999999999999998864 4566
Q ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhh---cCchHHHHHHhccchhHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 000916 818 ATAAKFELASLYGGQSDQLAVIAAFECWKNAKQ---RGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVSS 894 (1225)
Q Consensus 818 a~~~k~~~~~~~~~~SDhl~~l~af~~w~~~~~---~~~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~~gfv~~~~~~ 894 (1225)
+..+++.|. +..|||++++|+|+.|.+.+. .+..+.||++||||+.+|+++.++++||..++++.|+..
T Consensus 528 a~~~~~~f~---~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~----- 599 (1283)
T TIGR01967 528 ADQAHARFK---DPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKL----- 599 (1283)
T ss_pred HHHHHHHhc---CCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCc-----
Confidence 777777775 578999999999999986532 123468999999999999999999999999999988732
Q ss_pred CCCCCCChHHHHHHHHhccCccceeecCCCCCCceEEEecCCcEEEECCCCcCCccCCCCCCCCCeEEEEeeccccCceE
Q 000916 895 CSHNARVPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVYDEITRGDGGMH 974 (1225)
Q Consensus 895 ~n~ns~~~~lika~L~aGlyPnVAr~~~~~~~~~~~v~t~~~~~V~iHPsSvl~~~~~~~~~~~~wvvy~E~~~t~~k~~ 974 (1225)
+.+..++..|+.+|++|||+|||+... .+ . +.+.+|..+.|||+|++++ .+++||||+|++.| ++.|
T Consensus 600 -~~~~~~~~~i~~~l~~g~~~~iA~~~~--~~--~-y~~~~g~~~~ihP~S~L~~------~~p~wvv~~elv~t-~~~~ 666 (1283)
T TIGR01967 600 -NEEPADYDAIHKALLSGLLSQIGMKDE--KH--E-YDGARGRKFHIFPGSPLFK------KPPKWVMAAELVET-SKLY 666 (1283)
T ss_pred -CCCCccHHHHHHHHHHhhHHHHheeCC--CC--c-EEecCCcEEEECCCccccC------CCCCEEEEeeeccc-chhe
Confidence 222345656899999999999998753 12 2 4456788999999999986 24789999999987 6899
Q ss_pred EeeccccChhhHHhhccccc
Q 000916 975 VRNCTVVGPLPLLLLATEIA 994 (1225)
Q Consensus 975 ir~~T~V~p~~LlLfgg~~~ 994 (1225)
||++|.|+|.||..+++++.
T Consensus 667 ir~~a~I~p~wl~~~~~~~~ 686 (1283)
T TIGR01967 667 ARLVAKIEPEWVEPVAGHLI 686 (1283)
T ss_pred EeeeccCCHHHHHHHhHHHh
Confidence 99999999999999998874
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-122 Score=1077.75 Aligned_cols=637 Identities=31% Similarity=0.476 Sum_probs=541.7
Q ss_pred hhHHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccC---CccEEEEecchHHHHHHHHH
Q 000916 177 NLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKG---ETCKIVCTQPRRISATSVAE 253 (1225)
Q Consensus 177 ~~~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~---~~~~IicTQPRRiaAisvAe 253 (1225)
+-.++++.|..|||....++|+++|..|.||||||+|||||||||||||+|.+++.. .++.|.+|||||+||+++|+
T Consensus 244 R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAk 323 (1172)
T KOG0926|consen 244 RPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAK 323 (1172)
T ss_pred CcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999999998632 35689999999999999999
Q ss_pred HHHHHhCCccCCeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccch
Q 000916 254 RISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYS 333 (1225)
Q Consensus 254 RVa~Erge~lG~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~t 333 (1225)
|||.|+|. +|..||||||||+..++.|+|.|||+|||||++++| ..|+.||+|||||+|||++||
T Consensus 324 RVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~D--------------flL~kYSvIIlDEAHERSvnT 388 (1172)
T KOG0926|consen 324 RVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIEND--------------FLLTKYSVIILDEAHERSVNT 388 (1172)
T ss_pred HHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHh--------------HhhhhceeEEechhhhccchH
Confidence 99999998 999999999999999999999999999999999998 489999999999999999999
Q ss_pred hHHHHHHHHhCcCC----------CCceEEEEcccccHHHHHh---hhC-CCCeEecCCcccceeEEEehhhHHhhhhcc
Q 000916 334 DFMLAIIRDMLPSY----------PHLRLILMSATLDADRFSQ---YFG-GCPVIQVPGFTYPVKSFYLEDVLSILKSAE 399 (1225)
Q Consensus 334 D~LL~lLk~ll~~~----------~~LKlILMSATld~~~Fs~---yF~-~~pvi~I~gr~~pV~~~yLedil~~~~~~~ 399 (1225)
|+|+++|.++++.| +.||||+||||+.++.|++ .|. -.|+|.|+.|+|||.+||-...
T Consensus 389 DILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT-------- 460 (1172)
T KOG0926|consen 389 DILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRT-------- 460 (1172)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCC--------
Confidence 99999999988753 4899999999999999984 676 4689999999999999984310
Q ss_pred ccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhh
Q 000916 400 SNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVC 479 (1225)
Q Consensus 400 ~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~ 479 (1225)
| ..++++|..
T Consensus 461 -----------~----------~DYi~eAfr------------------------------------------------- 470 (1172)
T KOG0926|consen 461 -----------P----------DDYIAEAFR------------------------------------------------- 470 (1172)
T ss_pred -----------C----------chHHHHHHH-------------------------------------------------
Confidence 0 001111110
Q ss_pred hhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcC
Q 000916 480 MLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDS 559 (1225)
Q Consensus 480 ~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~ 559 (1225)
-.+.||..-
T Consensus 471 -----------------------------------------------------------------------Ktc~IH~kL 479 (1172)
T KOG0926|consen 471 -----------------------------------------------------------------------KTCKIHKKL 479 (1172)
T ss_pred -----------------------------------------------------------------------HHHHHhhcC
Confidence 123677778
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCC--CC-------------------------------------------------
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPF--FR------------------------------------------------- 588 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~--~~------------------------------------------------- 588 (1225)
++|+||||++|..||..|+++|+...- |+
T Consensus 480 P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~ 559 (1172)
T KOG0926|consen 480 PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDS 559 (1172)
T ss_pred CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcc
Confidence 999999999999999999998854300 00
Q ss_pred -----------------------------------------CCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecch
Q 000916 589 -----------------------------------------DTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNI 627 (1225)
Q Consensus 589 -----------------------------------------~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNI 627 (1225)
+.+.++|+||||.|++++|.+||+.+|.|.|-||||||+
T Consensus 560 ~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNV 639 (1172)
T KOG0926|consen 560 GFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNV 639 (1172)
T ss_pred cchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccc
Confidence 112689999999999999999999999999999999999
Q ss_pred hccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHHHHh-cCCCCCCCccc
Q 000916 628 AETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAA-SLPDFQVPEIK 706 (1225)
Q Consensus 628 AEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~~-~m~~~~~PEI~ 706 (1225)
||||+|||+|+||||||++|++.||..+|++.+...|||||||.||+|||||++||+||||||...|+ .|++|..|||+
T Consensus 640 AETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIl 719 (1172)
T KOG0926|consen 640 AETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEIL 719 (1172)
T ss_pred hhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 79999999999
Q ss_pred ccChhhHHHHHhhcCCCCChhhhhhhcCCCCcHHHHHHHHHHHHHcCCCCCCCcccccccccccccCchhhhHHHHHHhh
Q 000916 707 RIPIEELCLQVKLLDPNCNIEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAIL 786 (1225)
Q Consensus 707 R~pL~~l~L~~K~l~~~~~i~~fL~~~ldPP~~~av~~Al~~L~~lgALd~~e~LT~LG~~La~LPvdp~lgKmLl~g~~ 786 (1225)
++|.++++||+|.|++ ..|.+| .|+.||...+++.|.+.|..|||||.++.||+||+.|+.+||.||++|||+.+..
T Consensus 720 k~Pve~lvLqMKsMnI-~kVvnF--PFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q 796 (1172)
T KOG0926|consen 720 KKPVESLVLQMKSMNI-DKVVNF--PFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQ 796 (1172)
T ss_pred hCcHHHHHHHHHhcCc-cceecC--CCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHh
Confidence 9999999999999998 468899 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHhhccCCCCCccCC-----------CChhHHH-------------------HHHHHHHHHhhhccCCCcHH
Q 000916 787 MDCLDPALTLACASDYRDPFTLP-----------ISPNEKK-------------------RATAAKFELASLYGGQSDQL 836 (1225)
Q Consensus 787 ~~CldpiltIaA~ls~~~pF~~P-----------~~~~~~~-------------------~a~~~k~~~~~~~~~~SDhl 836 (1225)
.+|+..++.++++|++.+||+.- +.+++++ ...+++.+|. ...||-|
T Consensus 797 ~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~---~l~sd~l 873 (1172)
T KOG0926|consen 797 HNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFS---NLDSDAL 873 (1172)
T ss_pred hcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhc---cCCccHH
Confidence 99999999999999999999731 1122211 0112333333 3458999
Q ss_pred HHHHHHHHHHHHhhcCchHHHHHHhccchhHHHHHHHHHHHHHHHHHHcCCCCC----CCCCCCCCCCChHHHHHHHHhc
Q 000916 837 AVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPE----DVSSCSHNARVPGIIHAVLMAG 912 (1225)
Q Consensus 837 ~~l~af~~w~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~~gfv~~----~~~~~n~ns~~~~lika~L~aG 912 (1225)
+++.|..++..+... ..||..|||..++|.++.++|+||..++.+...-.. +............+++.+||||
T Consensus 874 ~Ll~Av~a~ey~~~~---~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag 950 (1172)
T KOG0926|consen 874 VLLSAVSAAEYAENG---MRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAG 950 (1172)
T ss_pred HHHHHHHHHHhhhhc---chhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHH
Confidence 999999999887543 359999999999999999999999998874321100 0000000112345899999999
Q ss_pred cCccceeecCCCCCCceEEEecCCcEEEECCCCcCCccCCCCCCCCCeEEEEeeccccCceEEeeccccChhhHHhhccc
Q 000916 913 LYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVYDEITRGDGGMHVRNCTVVGPLPLLLLATE 992 (1225)
Q Consensus 913 lyPnVAr~~~~~~~~~~~v~t~~~~~V~iHPsSvl~~~~~~~~~~~~wvvy~E~~~t~~k~~ir~~T~V~p~~LlLfgg~ 992 (1225)
|-..||+..+. ..| -.+.-+..|+|||.||+++ ..|+||+|.|+..+++..+++++|.|.|.||+..++.
T Consensus 951 ~~DrVArk~~~--~~y--~~~~i~~~~fl~~~svl~~------~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~s 1020 (1172)
T KOG0926|consen 951 FADRVARKVDA--TEY--DAAKIQEPVFLHRWSVLIN------SAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKS 1020 (1172)
T ss_pred HHHHHHHhccc--ccc--chhhhcCceeeeehhhhhc------cCccceehhhhhhcCCcccccceEEEchHHHHhhhhh
Confidence 99999984321 112 1233456899999999987 2489999999999876667777999999999999887
Q ss_pred cccc
Q 000916 993 IAVA 996 (1225)
Q Consensus 993 ~~~~ 996 (1225)
+.+-
T Consensus 1021 lcn~ 1024 (1172)
T KOG0926|consen 1021 LCNF 1024 (1172)
T ss_pred hccc
Confidence 7654
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=7.8e-114 Score=1012.17 Aligned_cols=767 Identities=36% Similarity=0.595 Sum_probs=641.3
Q ss_pred hhhhchhhHHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc--cCCccEEEEecchHHHH
Q 000916 171 RIEKDANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS--KGETCKIVCTQPRRISA 248 (1225)
Q Consensus 171 ~~~~~~~~~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~--~~~~~~IicTQPRRiaA 248 (1225)
+...+..+..+.++|.+|||..++++|++++.+|+|++|.|+|||||||||-|||||+... .+...+++++|||||+|
T Consensus 360 ~~~~d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisa 439 (1282)
T KOG0921|consen 360 RFKRDEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISA 439 (1282)
T ss_pred hhhcccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccch
Confidence 3445677889999999999999999999999999999999999999999999999999874 45566899999999999
Q ss_pred HHHHHHHHHHhCCccCCeEEEEEeecccCCC-CccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccc
Q 000916 249 TSVAERISVERGENIGDNIGYKIRLESKGGK-HSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH 327 (1225)
Q Consensus 249 isvAeRVa~Erge~lG~~VGY~IR~es~~s~-~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvH 327 (1225)
+++|+|||.|+++.+|++|||++|++|.++. ...|.|||.|+|||++.+. |.+++|+|+||+|
T Consensus 440 isiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g----------------lrg~sh~i~deih 503 (1282)
T KOG0921|consen 440 ISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG----------------LRGISHVIIDEIH 503 (1282)
T ss_pred HHHHHHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc----------------ccccccccchhhh
Confidence 9999999999999999999999999999874 6789999999999999864 8899999999999
Q ss_pred ccccchhHHHHHHHHhCcCCCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhcccccccccc
Q 000916 328 ERDRYSDFMLAIIRDMLPSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSAS 407 (1225)
Q Consensus 328 ER~~~tD~LL~lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~ 407 (1225)
||++++||||.+||++...+++|++||||||||.+.|.+||+.||.+.++|++|||+.||++|++.++.+.+....
T Consensus 504 erdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~---- 579 (1282)
T KOG0921|consen 504 ERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPS---- 579 (1282)
T ss_pred hhccchHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876543110
Q ss_pred ccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhcccc
Q 000916 408 LIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGAD 487 (1225)
Q Consensus 408 ~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~ 487 (1225)
+++..+.+. +..+...+ + +-|
T Consensus 580 ---~~k~k~~~~----------------------------~~~~~~dd----------------K------------~~n 600 (1282)
T KOG0921|consen 580 ---QKKRKKDDD----------------------------EEDEEVDD----------------K------------GRN 600 (1282)
T ss_pred ---ccchhhccc----------------------------ccCchhhh----------------c------------ccc
Confidence 000000000 00000000 0 000
Q ss_pred chhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEE
Q 000916 488 CQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVF 567 (1225)
Q Consensus 488 ~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVF 567 (1225)
.+..+.+ +..+. +..-+..+....+.+.|++.++.+|....-+|+||||
T Consensus 601 ~n~~~dd--------------~~~~~-----------------~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvf 649 (1282)
T KOG0921|consen 601 MNILCDP--------------SYNES-----------------TRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVF 649 (1282)
T ss_pred cccccCh--------------hhcch-----------------hhhhhhcchhhcchhHHHHHHHhhhcccCCccceeee
Confidence 0000000 00000 0111222334456788999999999998899999999
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcc
Q 000916 568 LPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMK 647 (1225)
Q Consensus 568 LpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~K 647 (1225)
+|||++|..|+..|+....+++..++.++|+||.++..+|++||++.|.|++|||++||||||||||+||+||||++++|
T Consensus 650 lpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~ 729 (1282)
T KOG0921|consen 650 LPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAK 729 (1282)
T ss_pred cCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeee
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHHHHhcCCCCCCCcccccChhhHHHHHhhcCCCCChh
Q 000916 648 EKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPNCNIE 727 (1225)
Q Consensus 648 e~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~~~m~~~~~PEI~R~pL~~l~L~~K~l~~~~~i~ 727 (1225)
++.|-..+++....++|.||-+..||+|||||++||.||||.++.+|+.+.++-.|||.|+||+++.|.+|++.. .+|.
T Consensus 730 ~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l-~SI~ 808 (1282)
T KOG0921|consen 730 EKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRL-GSIG 808 (1282)
T ss_pred eeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHh-hhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976 6899
Q ss_pred hhhhhcCCCCcHHHHHHHHHHHHHcCCCCCCCcccccccccccccCchhhhHHHHHHhhcCChhHHHHHhhccCCCCCcc
Q 000916 728 DFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYRDPFT 807 (1225)
Q Consensus 728 ~fL~~~ldPP~~~av~~Al~~L~~lgALd~~e~LT~LG~~La~LPvdp~lgKmLl~g~~~~CldpiltIaA~ls~~~pF~ 807 (1225)
.||.++|+||+.++|..|-..|..++++|.++.||+||+.++.||++|++|||++.|..++|.+-+..+|+.+++..||+
T Consensus 809 ~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~ 888 (1282)
T KOG0921|consen 809 EFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFV 888 (1282)
T ss_pred HHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCChhHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhhcC--chHHHHHHhccchhHHHHHHHHHHHHHHHHHHc
Q 000916 808 LPISPNEKKRATAAKFELASLYGGQSDQLAVIAAFECWKNAKQRG--QEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKN 885 (1225)
Q Consensus 808 ~P~~~~~~~~a~~~k~~~~~~~~~~SDhl~~l~af~~w~~~~~~~--~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~~ 885 (1225)
.- .+.. .+....++.|+. ..+|||.+.+.+-+.|..+...+ .+++||..+.++..+|.++.++|+||...|+..
T Consensus 889 ~~-~~~~-~rl~g~q~~~~g--~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~ 964 (1282)
T KOG0921|consen 889 PR-EKHH-SRLSGTQRKFAG--NKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQC 964 (1282)
T ss_pred cc-cccc-cccccchhhccc--cccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhc
Confidence 42 2221 222223344443 45667666666666665543333 357999999999999999999999999999988
Q ss_pred CCCCCCC--CCCCCCCC--ChHHHHHHHHhccCccceeecCCCCCCceEEEecCCcEEEECCCCcCCccC-CCCCCCCCe
Q 000916 886 GFIPEDV--SSCSHNAR--VPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLS-FKKTDDCPL 960 (1225)
Q Consensus 886 gfv~~~~--~~~n~ns~--~~~lika~L~aGlyPnVAr~~~~~~~~~~~v~t~~~~~V~iHPsSvl~~~~-~~~~~~~~w 960 (1225)
+|..... ...+.|.. +..++++.||+++|||+|... ..++ +.|.++....||.+|+|+..+ ..-.+|+||
T Consensus 965 ~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~lypn~~~y~----ekrk-vLtTe~~~alihk~Svncp~S~qdM~fPsPF 1039 (1282)
T KOG0921|consen 965 SFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAYYV----EKRK-VLTTEQSSALIHKYSVNCPNSRQEMDFPSPF 1039 (1282)
T ss_pred cCccccccceeeccCCCCchhHHHHHHHHhhcCCccceec----ccee-EEeecchhhhhhhhcccCCCcccccCCCCce
Confidence 8754221 12334443 345789999999999998752 2344 445566778899999887422 123588999
Q ss_pred EEEEeeccccCceEEeeccccChhhHHhhcccccccCCCCCCCCCCCCCCCCCccccCCCccccccccccccCCCCCccc
Q 000916 961 MVYDEITRGDGGMHVRNCTVVGPLPLLLLATEIAVAPAPDNEDDDEDDDMSDDDADENESDEDCMEIDDKTSGQHGENVM 1040 (1225)
Q Consensus 961 vvy~E~~~t~~k~~ir~~T~V~p~~LlLfgg~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1225)
+||.|++|| ..+..+..|+|+|+.|||||.+-. + + |+
T Consensus 1040 FVFGEKIRT-RAIS~K~MslVsPLQLLLF~SrKV-q-----------s-------dg----------------------- 1076 (1282)
T KOG0921|consen 1040 FVFGEKIRT-RAISCKQMSLVSPLQLLLFGSRKV-Q-----------S-------DG----------------------- 1076 (1282)
T ss_pred eeechhhhh-heecccCccccChHHHhhhhhhhc-c-----------c-------cC-----------------------
Confidence 999999998 689999999999999999997632 1 1 11
Q ss_pred cCCCCceEEEecCeEEeccChhhHHHHHHHHHHHHHHHHHHHhCCCCC--CCcchHHHHHHHHHHHc
Q 000916 1041 SSPDKSVTVVVDRWLYFGSTALDIAQIYCLRERLSVAILFKVTHPQKA--LPPVLEASMYAMASILS 1105 (1225)
Q Consensus 1041 ~s~~~~~~~~vD~Wi~f~~~~~~~~~i~~lR~~l~~ll~~ki~~P~~~--~~~~~~~~~~ai~~lls 1105 (1225)
...|.||+||.|+++.+.||.|..||..+++|+....++|... |.|..+.+++.|.+|-.
T Consensus 1077 -----q~IV~VDdWIklqIshEaAAcItgLr~AmEaLvvev~knPaiIsqLdpvnarllnmiRdIs~ 1138 (1282)
T KOG0921|consen 1077 -----QGIVRVDDWIKLQISHEAAACITGLRPAMEALVVEVCKNPAIISQLDPVNARLLNMIRDISR 1138 (1282)
T ss_pred -----cceEEeeceeeEeccHHHHHHHhhhHHHHHHHHHHHhcChhHhhccCchhHHHHHHHHHhcc
Confidence 1258899999999999999999999999999999999999986 56777888887777644
No 11
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-97 Score=934.69 Aligned_cols=572 Identities=29% Similarity=0.453 Sum_probs=474.7
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeE
Q 000916 188 LPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNI 267 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~V 267 (1225)
|||+.++++|+++|++|++|||+|+||||||||+||+|++... ..++|+||||||++|+++|+|||+++++.+|.+|
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 8999999999999999999999999999999999999999863 3469999999999999999999999999999999
Q ss_pred EEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc-C
Q 000916 268 GYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP-S 346 (1225)
Q Consensus 268 GY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~-~ 346 (1225)
||.||++++.+.+|+|+|||+|+|+++|..+ +.|++|++|||||+|||++++|++++++++++. .
T Consensus 78 Gy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d--------------~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l 143 (819)
T TIGR01970 78 GYRVRGENKVSRRTRLEVVTEGILTRMIQDD--------------PELDGVGALIFDEFHERSLDADLGLALALDVQSSL 143 (819)
T ss_pred EEEEccccccCCCCcEEEECCcHHHHHHhhC--------------cccccCCEEEEeccchhhhccchHHHHHHHHHHhc
Confidence 9999999999999999999999999999876 479999999999999999999999999998875 5
Q ss_pred CCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhhhhhhH
Q 000916 347 YPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKSTLD 426 (1225)
Q Consensus 347 ~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d 426 (1225)
++++|+|+||||++.+.|++||+++|+|.++|+.|||+++|++.. .. ..+.
T Consensus 144 r~dlqlIlmSATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~-------~~----------------------~~~~ 194 (819)
T TIGR01970 144 REDLKILAMSATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLR-------GD----------------------QRLE 194 (819)
T ss_pred CCCceEEEEeCCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecc-------hh----------------------hhHH
Confidence 789999999999999999999999999999999999999997520 00 0000
Q ss_pred HHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccccC
Q 000916 427 EAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQEN 506 (1225)
Q Consensus 427 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~ 506 (1225)
+
T Consensus 195 ~------------------------------------------------------------------------------- 195 (819)
T TIGR01970 195 D------------------------------------------------------------------------------- 195 (819)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred chhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCC
Q 000916 507 QPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPF 586 (1225)
Q Consensus 507 ~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~ 586 (1225)
.+...+.++.. ...|.|||||||+++|+.+++.|....
T Consensus 196 ----------------------------------------~v~~~l~~~l~-~~~g~iLVFlpg~~eI~~l~~~L~~~~- 233 (819)
T TIGR01970 196 ----------------------------------------AVSRAVEHALA-SETGSILVFLPGQAEIRRVQEQLAERL- 233 (819)
T ss_pred ----------------------------------------HHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHhhc-
Confidence 00011111221 236999999999999999999997531
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccC
Q 000916 587 FRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVS 666 (1225)
Q Consensus 587 ~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiS 666 (1225)
..++.|++|||+|+.++|.++|+++++|.+||||||||||||||||||+||||+|++|++.||+.++++.|.++|||
T Consensus 234 ---~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iS 310 (819)
T TIGR01970 234 ---DSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRIS 310 (819)
T ss_pred ---CCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEEC
Confidence 13589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHhhcCccCCCcceEEEEecCHHHHhcCCCCCCCcccccChhhHHHHHhhcCCCCChhhhhhhcCCCCcHHHHHHHH
Q 000916 667 KASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKTLDPPVSVTIRNAI 746 (1225)
Q Consensus 667 kasa~QR~GRAGR~~~G~CyrLys~~~~~~m~~~~~PEI~R~pL~~l~L~~K~l~~~~~i~~fL~~~ldPP~~~av~~Al 746 (1225)
||+|.||+|||||++||+||||||+..|..|++++.|||+|++|+++||++|.++.. ++.+| .|+|||+..++.+|+
T Consensus 311 kasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~-~~~~~--~~l~~P~~~~i~~a~ 387 (819)
T TIGR01970 311 QASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAK-DPSDL--RWLDAPPSVALAAAR 387 (819)
T ss_pred HHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCC-ChhhC--CCCCCcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999863 56777 899999999999999
Q ss_pred HHHHHcCCCCCCCcccccccccccccCchhhhHHHHHHhhcCChhHHHHHhhccCCCCCccCCCChhHHHHHHHHHHHHh
Q 000916 747 IVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYRDPFTLPISPNEKKRATAAKFELA 826 (1225)
Q Consensus 747 ~~L~~lgALd~~e~LT~LG~~La~LPvdp~lgKmLl~g~~~~CldpiltIaA~ls~~~pF~~P~~~~~~~~a~~~k~~~~ 826 (1225)
+.|+.+||||.+++||++|++|+.||+||++||||++|..|+|++++++|||+|+.++|+..
T Consensus 388 ~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~------------------ 449 (819)
T TIGR01970 388 QLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ------------------ 449 (819)
T ss_pred HHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC------------------
Confidence 99999999999999999999999999999999999999999999999999999999987521
Q ss_pred hhccCCCcHHHHHHHHHHHHHHhhcCchHHHHHHhccchhHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCChHHHH
Q 000916 827 SLYGGQSDQLAVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVSSCSHNARVPGIIH 906 (1225)
Q Consensus 827 ~~~~~~SDhl~~l~af~~w~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~~gfv~~~~~~~n~ns~~~~lik 906 (1225)
..+|....+.+++.. . ...|. .+..+.+|+...+ +....... ..+ +.. +-
T Consensus 450 ----~~~d~~~~~~~~~~~---~-----~~~~~----------~~~~~~~~~~~~~---~~~~~~~~--~~~--~~~-~g 499 (819)
T TIGR01970 450 ----GGADLMNRLHRLQQG---R-----QGRGQ----------RAQQLAKKLRRRL---RFSQADSG--AIA--SHA-LG 499 (819)
T ss_pred ----CcccHHHHHHHHhhc---c-----hhhHH----------HHHHHHHHHHHHh---CcCcCCCc--ccc--cch-Hh
Confidence 125765555444321 0 01111 1233344443322 22100000 011 111 34
Q ss_pred HHHHhccCccceeecCCCCCCceEEEecCCcEEEECCCCcCCccCCCCCCCCCeEEEEeeccc--cCceEEeeccccChh
Q 000916 907 AVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVYDEITRG--DGGMHVRNCTVVGPL 984 (1225)
Q Consensus 907 a~L~aGlyPnVAr~~~~~~~~~~~v~t~~~~~V~iHPsSvl~~~~~~~~~~~~wvvy~E~~~t--~~k~~ir~~T~V~p~ 984 (1225)
.+|+.+|--.||+... ++.+ +...+|..+.+++.|.+++ .+|++..|+..+ ...-.|+.++.|++.
T Consensus 500 ~lla~a~pdria~~r~---~~~~-y~l~~G~~~~l~~~~~l~~--------~~~l~~a~~~~~~~~~~~~i~~a~~i~~~ 567 (819)
T TIGR01970 500 LLLALAFPDRIAKRRG---QPGR-YQLANGRGAVLSAEDALAR--------EPWLVAADLGEGQGKTAARILLAAPVDEA 567 (819)
T ss_pred HHHhhhChHhheeccC---CCCe-EECCCCCeeEeCCCCcccC--------CCeEEEEEeeccCCccccceeeeccCCHH
Confidence 4555554447887542 1123 4567899999999999875 589999999633 123568899999999
Q ss_pred hHHhhccc
Q 000916 985 PLLLLATE 992 (1225)
Q Consensus 985 ~LlLfgg~ 992 (1225)
|+.-..++
T Consensus 568 ~~~~~~~~ 575 (819)
T TIGR01970 568 LLRQVLPD 575 (819)
T ss_pred HHHHHhHH
Confidence 98765554
No 12
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.9e-96 Score=923.85 Aligned_cols=562 Identities=29% Similarity=0.451 Sum_probs=469.4
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCe
Q 000916 187 KLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDN 266 (1225)
Q Consensus 187 ~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~ 266 (1225)
.||||..+++|+++|++|++|||+|+||||||||+||+|++..+. .++|+|+||||++|+++|+|+|.++++.+|.+
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 599999999999999999999999999999999999999987543 24899999999999999999999999999999
Q ss_pred EEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc-
Q 000916 267 IGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP- 345 (1225)
Q Consensus 267 VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~- 345 (1225)
|||.+|++++.+.+|+|+|||+|+|+++|..+ +.|++|++|||||+|||++++|++|+++++++.
T Consensus 80 VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d--------------~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~ 145 (812)
T PRK11664 80 VGYRMRAESKVGPNTRLEVVTEGILTRMIQRD--------------PELSGVGLVILDEFHERSLQADLALALLLDVQQG 145 (812)
T ss_pred EEEEecCccccCCCCcEEEEChhHHHHHHhhC--------------CCcCcCcEEEEcCCCccccccchHHHHHHHHHHh
Confidence 99999999999999999999999999999876 479999999999999999999999999998876
Q ss_pred CCCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhhhhhh
Q 000916 346 SYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKSTL 425 (1225)
Q Consensus 346 ~~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 425 (1225)
.++++|+|+||||++.+.|++||+++++|.++|+.|||+++|+... . ...+
T Consensus 146 lr~~lqlilmSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~--------~---------------------~~~~ 196 (812)
T PRK11664 146 LRDDLKLLIMSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLP--------A---------------------HQRF 196 (812)
T ss_pred CCccceEEEEecCCCHHHHHHhcCCCCEEEecCccccceEEeccCc--------h---------------------hhhH
Confidence 4789999999999999999999999999999999999999997420 0 0000
Q ss_pred HHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhcccc
Q 000916 426 DEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQE 505 (1225)
Q Consensus 426 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~ 505 (1225)
++
T Consensus 197 ~~------------------------------------------------------------------------------ 198 (812)
T PRK11664 197 DE------------------------------------------------------------------------------ 198 (812)
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred CchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCC
Q 000916 506 NQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANP 585 (1225)
Q Consensus 506 ~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~ 585 (1225)
.+...|.++.. ...|.|||||||+++|+.+++.|....
T Consensus 199 -----------------------------------------~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~ 236 (812)
T PRK11664 199 -----------------------------------------AVARATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRV 236 (812)
T ss_pred -----------------------------------------HHHHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhc
Confidence 00011111111 246999999999999999999997521
Q ss_pred CCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCccccccccc
Q 000916 586 FFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWV 665 (1225)
Q Consensus 586 ~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wi 665 (1225)
...+.|++|||+|+.++|.++|.++++|++||||||||||||||||||+||||+|++|++.||+.++++.|.++||
T Consensus 237 ----~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 312 (812)
T PRK11664 237 ----ASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRI 312 (812)
T ss_pred ----cCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEee
Confidence 1248899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHhhcCccCCCcceEEEEecCHHHHhcCCCCCCCcccccChhhHHHHHhhcCCCCChhhhhhhcCCCCcHHHHHHH
Q 000916 666 SKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKTLDPPVSVTIRNA 745 (1225)
Q Consensus 666 Skasa~QR~GRAGR~~~G~CyrLys~~~~~~m~~~~~PEI~R~pL~~l~L~~K~l~~~~~i~~fL~~~ldPP~~~av~~A 745 (1225)
|||+|.||+|||||++||+||||||+..|+.|++++.|||+|.+|+++||++|.++. .++.+| .|||||+..++.+|
T Consensus 313 Skasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~-~~~~~~--~~ld~P~~~~~~~A 389 (812)
T PRK11664 313 SQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGC-HDPAQL--SWLDQPPAAALAAA 389 (812)
T ss_pred chhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCC-CCHHhC--CCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 357777 89999999999999
Q ss_pred HHHHHHcCCCCCCCcccccccccccccCchhhhHHHHHHhhcCChh--HHHHHhhccCCCCCccCCCChhHHHHHHHHHH
Q 000916 746 IIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLD--PALTLACASDYRDPFTLPISPNEKKRATAAKF 823 (1225)
Q Consensus 746 l~~L~~lgALd~~e~LT~LG~~La~LPvdp~lgKmLl~g~~~~Cld--piltIaA~ls~~~pF~~P~~~~~~~~a~~~k~ 823 (1225)
++.|+.+||||.+++||++|+.|+.||+||++|||||.|+.++|.. .+..|||.|+.+++ -
T Consensus 390 ~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~-~---------------- 452 (812)
T PRK11664 390 KRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR-S---------------- 452 (812)
T ss_pred HHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC-C----------------
Confidence 9999999999999999999999999999999999999999998753 66677777665421 0
Q ss_pred HHhhhccCCCcHHHHHHHHHHHHHHhhcCchHHHHHHhccchhHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCChH
Q 000916 824 ELASLYGGQSDQLAVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNGFIPEDVSSCSHNARVPG 903 (1225)
Q Consensus 824 ~~~~~~~~~SDhl~~l~af~~w~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~~gfv~~~~~~~n~ns~~~~ 903 (1225)
..+|....+..+. ..|+ ..+..+.+|+... .+ . .++.
T Consensus 453 -------~~~d~~~~l~~~~-----------~~~~----------~~~~~~~~~~~~~---~~--~----------~~~~ 489 (812)
T PRK11664 453 -------GSSDLGVALSRKQ-----------PHWQ----------QRAQQLLKRLNVR---GG--E----------ADSS 489 (812)
T ss_pred -------CcccHHHHHHHHH-----------HHHH----------HHHHHHHHHHHhh---cc--c----------CChH
Confidence 0123222222111 1232 2233334444221 11 0 0233
Q ss_pred HHHHHHHhccCccceeecCCCCCCceEEEecCCcEEEECCCCcCCccCCCCCCCCCeEEEEeecccc--CceEEeecccc
Q 000916 904 IIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVYDEITRGD--GGMHVRNCTVV 981 (1225)
Q Consensus 904 lika~L~aGlyPnVAr~~~~~~~~~~~v~t~~~~~V~iHPsSvl~~~~~~~~~~~~wvvy~E~~~t~--~k~~ir~~T~V 981 (1225)
.+..+|++||.-+||+... .++ + +...+|..+.|||+|.+++ .+|+|+.|+..++ ....|+.++.|
T Consensus 490 ~~~~~la~aypdriA~~r~--~~~-~-~~l~~G~~a~l~~~~~l~~--------~~~lv~a~~~~~~~~~~~ri~~a~~l 557 (812)
T PRK11664 490 LIAPLLALAFPDRIARRRG--QDG-R-YQLANGMGAMLDADDALSR--------HEWLIAPLLLQGSASPDARILLALPL 557 (812)
T ss_pred HHHHHHHHHCHHHHhhhcC--CCC-e-EEeeCCCeEEECCCCcccC--------CCeEEEEEhhccCccccceeeEeecc
Confidence 4778899998889998642 122 2 4567899999999999875 5899999996542 23468899999
Q ss_pred ChhhHHhhcccc
Q 000916 982 GPLPLLLLATEI 993 (1225)
Q Consensus 982 ~p~~LlLfgg~~ 993 (1225)
++.||....+..
T Consensus 558 ~~~~l~~~~~~~ 569 (812)
T PRK11664 558 DIDELVQRCPQL 569 (812)
T ss_pred CHHHHHHHHHHh
Confidence 999997765543
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.3e-65 Score=628.26 Aligned_cols=399 Identities=25% Similarity=0.356 Sum_probs=316.1
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHH-----Hhc-------cCCccEEEEecchHHHHHHHHHHHHHHhC
Q 000916 193 FKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEH-----IWS-------KGETCKIVCTQPRRISATSVAERISVERG 260 (1225)
Q Consensus 193 ~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~-----~~~-------~~~~~~IicTQPRRiaAisvAeRVa~Erg 260 (1225)
.|++|++.+.++++||+.|+||||||||+||||++. ++. .+..++|+|+||||.+|.++++++.++.|
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999999985 221 22457999999999999999999987776
Q ss_pred CccCCeEEEEEeecccCCC-------CccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccch
Q 000916 261 ENIGDNIGYKIRLESKGGK-------HSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYS 333 (1225)
Q Consensus 261 e~lG~~VGY~IR~es~~s~-------~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~t 333 (1225)
-.....+.+.++++...+. .+.|++||++..+ +.|+++++|||||||||+.++
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l--------------------~~L~~v~~VVIDEaHEr~~~~ 307 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTL--------------------NKLFDYGTVIIDEVHEHDQIG 307 (675)
T ss_pred ccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccc--------------------cccccCCEEEccccccCccch
Confidence 4322224456777765432 3469999987422 368899999999999999999
Q ss_pred hHHHHHHHHhCcCCCCceEEEEcccc--cHHHHHhhhCCCCeEecCCcc-cceeEEEehhhHHhhhhccccccccccccC
Q 000916 334 DFMLAIIRDMLPSYPHLRLILMSATL--DADRFSQYFGGCPVIQVPGFT-YPVKSFYLEDVLSILKSAESNHLDSASLIV 410 (1225)
Q Consensus 334 D~LL~lLk~ll~~~~~LKlILMSATl--d~~~Fs~yF~~~pvi~I~gr~-~pV~~~yLedil~~~~~~~~~~~~~~~~~~ 410 (1225)
|++++++++++... .|+|+||||+ +.+.|.+||+++++++++|++ |||+++|+++...
T Consensus 308 DllL~llk~~~~~~--rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~----------------- 368 (675)
T PHA02653 308 DIIIAVARKHIDKI--RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYN----------------- 368 (675)
T ss_pred hHHHHHHHHhhhhc--CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcc-----------------
Confidence 99999999876543 2899999999 577999999999999999996 9999999875210
Q ss_pred CCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchh
Q 000916 411 PNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQL 490 (1225)
Q Consensus 411 p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~ 490 (1225)
|... . +|
T Consensus 369 ~~~~----~-----------------------------------~y---------------------------------- 375 (675)
T PHA02653 369 PKNK----R-----------------------------------AY---------------------------------- 375 (675)
T ss_pred cccc----h-----------------------------------hh----------------------------------
Confidence 0000 0 00
Q ss_pred hccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCC
Q 000916 491 KAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPG 570 (1225)
Q Consensus 491 ~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG 570 (1225)
+... -..+...+... ....+|.+|||+||
T Consensus 376 -----------------------~~~~---------------------------k~~~l~~L~~~-~~~~~g~iLVFlpg 404 (675)
T PHA02653 376 -----------------------IEEE---------------------------KKNIVTALKKY-TPPKGSSGIVFVAS 404 (675)
T ss_pred -----------------------hHHH---------------------------HHHHHHHHHHh-hcccCCcEEEEECc
Confidence 0000 00000111111 11245899999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHH--HHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCccc
Q 000916 571 WEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQ--KKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKE 648 (1225)
Q Consensus 571 ~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ--~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke 648 (1225)
+++|+.+.+.|.... ..+.+++|||+|++.+| +++| ++|++||||||||||||||||||++|||+|++|.
T Consensus 405 ~~ei~~l~~~L~~~~-----~~~~v~~LHG~Lsq~eq~l~~ff---~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~ 476 (675)
T PHA02653 405 VSQCEEYKKYLEKRL-----PIYDFYIIHGKVPNIDEILEKVY---SSKNPSIIISTPYLESSVTIRNATHVYDTGRVYV 476 (675)
T ss_pred HHHHHHHHHHHHhhc-----CCceEEeccCCcCHHHHHHHHHh---ccCceeEEeccChhhccccccCeeEEEECCCccC
Confidence 999999999997641 24789999999998765 4444 4689999999999999999999999999999886
Q ss_pred ccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHHHHhcCCCCCCCcccccC---hhhHHHHHhhcCCCCC
Q 000916 649 KSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIP---IEELCLQVKLLDPNCN 725 (1225)
Q Consensus 649 ~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~~~m~~~~~PEI~R~p---L~~l~L~~K~l~~~~~ 725 (1225)
.. +.+++ +.|||+|+|.||+|||||+++|.||+||++..+ .| |+|++ |.++||++|.++.+ .
T Consensus 477 p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~-~ 541 (675)
T PHA02653 477 PE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLT-L 541 (675)
T ss_pred CC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCC-C
Confidence 63 44443 569999999999999999999999999999764 35 88888 78999999999863 3
Q ss_pred hhhhhhhcCCCCcHHHHHHHHHHHHHcCCCCCCCccccc--ccccccccCchhhhHHHHHHhh
Q 000916 726 IEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTEL--GEKLGCLSVHPLMSKMLFFAIL 786 (1225)
Q Consensus 726 i~~fL~~~ldPP~~~av~~Al~~L~~lgALd~~e~LT~L--G~~La~LPvdp~lgKmLl~g~~ 786 (1225)
+ +++ |+|||+.+++.+|++.|..+||+|+ +||.| |++|+.| ++||++++|++
T Consensus 542 ~-~~~--~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 542 P-EDL--FVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred c-ccc--cCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 3 443 8999999999999999999998865 79999 9999999 99999999874
No 14
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.4e-42 Score=410.66 Aligned_cols=568 Identities=8% Similarity=-0.165 Sum_probs=460.7
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc--cCCccEEEEecchHHHHHHHHHHHHH
Q 000916 180 QIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS--KGETCKIVCTQPRRISATSVAERISV 257 (1225)
Q Consensus 180 ~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~--~~~~~~IicTQPRRiaAisvAeRVa~ 257 (1225)
.+...+.-+|+.+..+.||+++..|.++++.+.||||||||+||+|+|+... ....|.++.+|||+++|..++.+++-
T Consensus 397 ~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~ 476 (1282)
T KOG0921|consen 397 IIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIM 476 (1282)
T ss_pred eEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccccccccee
Confidence 3455677899999999999999999999999999999999999999999764 23568999999999999999999999
Q ss_pred HhCCccCCeEEEEEeecccC-CCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHH
Q 000916 258 ERGENIGDNIGYKIRLESKG-GKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFM 336 (1225)
Q Consensus 258 Erge~lG~~VGY~IR~es~~-s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~L 336 (1225)
++++.++...||.++++... -.+..+.+||+|.||+.+..+ +.+++|+|.||+|+|++||||+
T Consensus 477 fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~----------------m~~ty~dl~v~lmsatIdTd~f 540 (1282)
T KOG0921|consen 477 FCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE----------------MISTYRDLRVVLMSATIDTDLF 540 (1282)
T ss_pred eeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh----------------hhccchhhhhhhhhcccchhhh
Confidence 99999999999999888754 357789999999999999875 5788999999999999999999
Q ss_pred HHHHHHhCcCCCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcc
Q 000916 337 LAIIRDMLPSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPE 416 (1225)
Q Consensus 337 L~lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~ 416 (1225)
+.+++++ | .+++|++|+++..|-.||-.|++++||+++++++.++.+|-... ++++..
T Consensus 541 ~~~f~~~----p--~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~----------------~~ddK~ 598 (1282)
T KOG0921|consen 541 TNFFSSI----P--DVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDE----------------EVDDKG 598 (1282)
T ss_pred hhhhccc----c--ceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCc----------------hhhhcc
Confidence 9999986 3 34999999999999999999999999999999999986652110 000000
Q ss_pred hhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccc
Q 000916 417 LTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGR 496 (1225)
Q Consensus 417 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~ 496 (1225)
+++....|.+. ..+. .+..++ +
T Consensus 599 --~n~n~~~dd~~---------------------------~~~~-----~~am~~---------~--------------- 620 (1282)
T KOG0921|consen 599 --RNMNILCDPSY---------------------------NEST-----RTAMSR---------L--------------- 620 (1282)
T ss_pred --cccccccChhh---------------------------cchh-----hhhhhc---------c---------------
Confidence 00000000000 0000 000000 0
Q ss_pred hhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHH
Q 000916 497 TALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINK 576 (1225)
Q Consensus 497 ~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~ 576 (1225)
.+..---++.+.+..+ .++..+..+|..-.+++++|+|||+|--+..
T Consensus 621 -----se~d~~f~l~Eal~~~----------------------------i~s~~i~gailvflpgwa~i~~L~~~ll~~~ 667 (1282)
T KOG0921|consen 621 -----SEKDIPFGLIEALLND----------------------------IASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ 667 (1282)
T ss_pred -----hhhcchhHHHHHHHhh----------------------------hcccCCccceeeecCchHHhhhhhhhhhhhh
Confidence 0000001111222111 1222333344444578999999999999999
Q ss_pred HHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCC
Q 000916 577 TRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNN 656 (1225)
Q Consensus 577 l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~ 656 (1225)
....+...+.++ ...+.+.++|+.+...+++.||+..+.+.++++..|++++++|++.++.+|++++..+.+.+-+...
T Consensus 668 ~fg~~~~y~ilp-~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw 746 (1282)
T KOG0921|consen 668 EFGQANKYEILP-LHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVW 746 (1282)
T ss_pred hhccchhccccc-chhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeec
Confidence 888887776665 3457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCHhhHHhhcCccCCCcceEEEEecCHHHHhcCCCCCCCcccccChhhHHHHHhhcCCCCChhhhhhhcCCC
Q 000916 657 VSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKTLDP 736 (1225)
Q Consensus 657 ~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~~~m~~~~~PEI~R~pL~~l~L~~K~l~~~~~i~~fL~~~ldP 736 (1225)
++....+|-++-...||.|||+|.+.+.||++++...+..|...++|||.++++....+.|+.+-. +.+..|+.+++.+
T Consensus 747 ~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~-kal~~~p~dav~e 825 (1282)
T KOG0921|consen 747 ASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLG-KALQPPPYDAVIE 825 (1282)
T ss_pred ccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHh-hccCCCchhhccC
Confidence 999999999999999999999999999999999999999999999999999999999988888753 5688899999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCCcccccccccccccCchhhhHHHHHHhhcCChhHHHHHhhccCCCCCccCCCChhHHH
Q 000916 737 PVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYRDPFTLPISPNEKK 816 (1225)
Q Consensus 737 P~~~av~~Al~~L~~lgALd~~e~LT~LG~~La~LPvdp~lgKmLl~g~~~~CldpiltIaA~ls~~~pF~~P~~~~~~~ 816 (1225)
|+...+..+.-.+.+..+.+..-.+|++++.++.+|+.|..|+|.+.++++=..+-+.+++++-..+.||.+. -.
T Consensus 826 ~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~-----g~ 900 (1282)
T KOG0921|consen 826 AEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLS-----GT 900 (1282)
T ss_pred chHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccc-----cc
Confidence 9999888888888888777777789999999999999999999999998887777778888887788888763 22
Q ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhh-cCchHHHHHHhccchhHHHHHHHHHHHHHHHHHHcC
Q 000916 817 RATAAKFELASLYGGQSDQLAVIAAFECWKNAKQ-RGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKNG 886 (1225)
Q Consensus 817 ~a~~~k~~~~~~~~~~SDhl~~l~af~~w~~~~~-~~~~~~~C~~~~Ls~~~l~~i~~~R~QL~~~L~~~g 886 (1225)
+..-+..+|+. +-.+||.+.+..|+.|..+.. +.....||..+-+...|+.+-+.+..||. ++.--+
T Consensus 901 q~~~~g~kfsd--hva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~~fpe 968 (1282)
T KOG0921|consen 901 QRKFAGNKFSD--HVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLR-QCSFPE 968 (1282)
T ss_pred hhhcccccccc--chhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHH-hccCcc
Confidence 33345667875 778999999999999997654 34567899999999999999999999998 665444
No 15
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.2e-35 Score=370.43 Aligned_cols=436 Identities=20% Similarity=0.200 Sum_probs=295.2
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeE
Q 000916 188 LPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNI 267 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~V 267 (1225)
...+.+|.++++.+.+++.++|+++||||||++..++|++..... .++++..|+|..|.++++++.. + ..+|..|
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raLa~q~~~~~~~-l-~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSLAMEKYEELSR-L-RSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHHHHHHHHHHHH-H-hhcCCeE
Confidence 446899999999999999999999999999999999999876532 3677777999999999888764 2 2457777
Q ss_pred EEEEeecccC---CCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccccccc--chhHHHHHHHH
Q 000916 268 GYKIRLESKG---GKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDR--YSDFMLAIIRD 342 (1225)
Q Consensus 268 GY~IR~es~~---s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~--~tD~LL~lLk~ 342 (1225)
++.+...... -....|++||+|.+...+..++ ..+.++++|||||+|+..- ....+-.++..
T Consensus 96 ~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~-------------~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~ 162 (674)
T PRK01172 96 KISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP-------------YIINDVGLIVADEIHIIGDEDRGPTLETVLSS 162 (674)
T ss_pred EEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh-------------hHHhhcCEEEEecchhccCCCccHHHHHHHHH
Confidence 7665422211 1356899999999887776553 3689999999999997531 12223333444
Q ss_pred hCcCCCCceEEEEcccc-cHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhh
Q 000916 343 MLPSYPHLRLILMSATL-DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEEN 421 (1225)
Q Consensus 343 ll~~~~~LKlILMSATl-d~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 421 (1225)
+...++++|+|+||||+ |++.|++|++ ++.+....|+.|++....... ..+.+
T Consensus 163 ~~~~~~~~riI~lSATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~--------~~~~~----------------- 216 (674)
T PRK01172 163 ARYVNPDARILALSATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRK--------RLILD----------------- 216 (674)
T ss_pred HHhcCcCCcEEEEeCccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecC--------eeeec-----------------
Confidence 43446789999999999 8999999996 566777778888775432100 00000
Q ss_pred hhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhh
Q 000916 422 KSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQL 501 (1225)
Q Consensus 422 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~ 501 (1225)
. ...
T Consensus 217 -------------------------------------~----------------------------------~~~----- 220 (674)
T PRK01172 217 -------------------------------------G----------------------------------YER----- 220 (674)
T ss_pred -------------------------------------c----------------------------------ccc-----
Confidence 0 000
Q ss_pred ccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHH
Q 000916 502 GEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRL 581 (1225)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L 581 (1225)
... + +..++.... ..++.+|||+|+..+++.+++.|
T Consensus 221 ----~~~-----------------------------------~---~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L 256 (674)
T PRK01172 221 ----SQV-----------------------------------D---INSLIKETV--NDGGQVLVFVSSRKNAEDYAEML 256 (674)
T ss_pred ----ccc-----------------------------------c---HHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHH
Confidence 000 0 001111111 24689999999999999999888
Q ss_pred HcCCC-CCC-------C----------CceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeC
Q 000916 582 LANPF-FRD-------T----------SKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDS 643 (1225)
Q Consensus 582 ~~~~~-~~~-------~----------~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDs 643 (1225)
..... ... . -...|..+||+|+.++|..+++.++.|..|||+||+++++||+||+..+||+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~ 336 (674)
T PRK01172 257 IQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRD 336 (674)
T ss_pred HHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcC
Confidence 65310 000 0 01247889999999999999999999999999999999999999999888862
Q ss_pred CCcccccccCCCCcccccccccCHhhHHhhcCccCCCc---ceEEEEe-cCHHH---Hhc-CCCCCCC--------cccc
Q 000916 644 GRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ---AGICYHL-YSQLR---AAS-LPDFQVP--------EIKR 707 (1225)
Q Consensus 644 G~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~---~G~CyrL-ys~~~---~~~-m~~~~~P--------EI~R 707 (1225)
. ..|+. ....++|.+++.||+|||||.+ .|.|+-+ ++... +.. |...+.| ++.+
T Consensus 337 -~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~ 406 (674)
T PRK01172 337 -I---TRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVR 406 (674)
T ss_pred -c---eEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHH
Confidence 1 23332 2335799999999999999976 4666554 34322 222 2222222 3333
Q ss_pred cChhhHHHHHhhcCCCCChhhhhh-hcC--CCCc---HHHHHHHHHHHHHcCCCCCCC--cccccccccccccCchhhhH
Q 000916 708 IPIEELCLQVKLLDPNCNIEDFLQ-KTL--DPPV---SVTIRNAIIVLQDIGALSLDE--KVTELGEKLGCLSVHPLMSK 779 (1225)
Q Consensus 708 ~pL~~l~L~~K~l~~~~~i~~fL~-~~l--dPP~---~~av~~Al~~L~~lgALd~~e--~LT~LG~~La~LPvdp~lgK 779 (1225)
..+-..+..-...+. .++.+|+. .|+ ++++ .+.|++|++.|.+.|+|+.++ .+|++|+.++.+|++|..++
T Consensus 407 ~~~l~~i~~g~~~~~-~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~ 485 (674)
T PRK01172 407 FNTLAAISMGLASSM-EDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESAL 485 (674)
T ss_pred HHHHHHHHhcccCCH-HHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHH
Confidence 322222222111111 24666754 222 3332 578999999999999998654 57999999999999999999
Q ss_pred HHHHHhhcC-ChhHHHHHhh
Q 000916 780 MLFFAILMD-CLDPALTLAC 798 (1225)
Q Consensus 780 mLl~g~~~~-CldpiltIaA 798 (1225)
+++.+..-. -.+.+|-+.|
T Consensus 486 ~~~~~l~~~~~~~~~l~~~~ 505 (674)
T PRK01172 486 ILKSAFDHDYDEDLALYYIS 505 (674)
T ss_pred HHHHHhhccCCHHHHHHHhh
Confidence 988765432 3344555544
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.5e-32 Score=328.80 Aligned_cols=311 Identities=21% Similarity=0.245 Sum_probs=223.5
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCcc-CCeEE
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENI-GDNIG 268 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l-G~~VG 268 (1225)
.+..|.+.+..+.+++.++++|+||||||+.+..++++........+++++..|+|.+|.++++.+-. ++... +..|.
T Consensus 27 ~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~-~~~~~~~~~v~ 105 (460)
T PRK11776 27 MTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRR-LARFIPNIKVL 105 (460)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHH-HHhhCCCcEEE
Confidence 45678999999999999999999999999999999998875444456788888999999999886633 22211 22332
Q ss_pred EEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHH
Q 000916 269 YKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRD 342 (1225)
Q Consensus 269 Y~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ 342 (1225)
.-....+ .....+.|++||+|.|++.+.... ..+.++++|||||+|+ .++..|.-.+ +.
T Consensus 106 ~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~-------------~~l~~l~~lViDEad~-~l~~g~~~~l-~~ 170 (460)
T PRK11776 106 TLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT-------------LDLDALNTLVLDEADR-MLDMGFQDAI-DA 170 (460)
T ss_pred EEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC-------------ccHHHCCEEEEECHHH-HhCcCcHHHH-HH
Confidence 2111111 122467899999999999998653 2689999999999994 4455553332 23
Q ss_pred hCc-CCCCceEEEEcccc--cHHHHHhhhCCCCe-EecCCc--ccceeEEEehhhHHhhhhccccccccccccCCCCCcc
Q 000916 343 MLP-SYPHLRLILMSATL--DADRFSQYFGGCPV-IQVPGF--TYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPE 416 (1225)
Q Consensus 343 ll~-~~~~LKlILMSATl--d~~~Fs~yF~~~pv-i~I~gr--~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~ 416 (1225)
++. ..++.++|+||||+ +...+.+.|...|+ +.+... ...++.+|..-
T Consensus 171 i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-------------------------- 224 (460)
T PRK11776 171 IIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEV-------------------------- 224 (460)
T ss_pred HHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEe--------------------------
Confidence 332 33567999999999 45566766654332 222111 00111111100
Q ss_pred hhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccc
Q 000916 417 LTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGR 496 (1225)
Q Consensus 417 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~ 496 (1225)
T Consensus 225 -------------------------------------------------------------------------------- 224 (460)
T PRK11776 225 -------------------------------------------------------------------------------- 224 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHH
Q 000916 497 TALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINK 576 (1225)
Q Consensus 497 ~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~ 576 (1225)
+.+. ..+.+..++ ....++.+|||+++..+++.
T Consensus 225 ------------------------------------------~~~~-k~~~l~~ll----~~~~~~~~lVF~~t~~~~~~ 257 (460)
T PRK11776 225 ------------------------------------------SPDE-RLPALQRLL----LHHQPESCVVFCNTKKECQE 257 (460)
T ss_pred ------------------------------------------CcHH-HHHHHHHHH----HhcCCCceEEEECCHHHHHH
Confidence 0000 001112222 23356789999999999999
Q ss_pred HHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCC
Q 000916 577 TRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNN 656 (1225)
Q Consensus 577 l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~ 656 (1225)
+.+.|.... +.+.++||+|++.+|.++++.+..|..+|+|||+++|+||+||+|.+||+++.
T Consensus 258 l~~~L~~~~-------~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~----------- 319 (460)
T PRK11776 258 VADALNAQG-------FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL----------- 319 (460)
T ss_pred HHHHHHhCC-------CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC-----------
Confidence 999997653 67999999999999999999999999999999999999999999999999876
Q ss_pred cccccccccCHhhHHhhcCccCCCcc-eEEEEecCHHHH
Q 000916 657 VSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLRA 694 (1225)
Q Consensus 657 ~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~~ 694 (1225)
|-+..++.||.|||||.+. |.||.||+....
T Consensus 320 -------p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 320 -------ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred -------CCCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 4456788999999999764 999999998543
No 17
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9e-31 Score=332.71 Aligned_cols=438 Identities=19% Similarity=0.185 Sum_probs=290.6
Q ss_pred CChHHHHHHHHH-HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeE
Q 000916 189 PISSFKDVITST-VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNI 267 (1225)
Q Consensus 189 Pi~~~r~eIl~a-I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~V 267 (1225)
-.+..|.+.+++ +.+++.++|+++||||||...-..++..... ..++++..|+|..|.+..+++. +++ .+|..|
T Consensus 23 ~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~raLa~q~~~~~~-~~~-~~g~~v 97 (737)
T PRK02362 23 ELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRALASEKFEEFE-RFE-ELGVRV 97 (737)
T ss_pred cCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHHHHHHHHHHHH-Hhh-cCCCEE
Confidence 356788888887 8899999999999999999988888887642 3589999999999999999886 342 235555
Q ss_pred EEEEeecc---cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccc-----cccchhHHHHH
Q 000916 268 GYKIRLES---KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE-----RDRYSDFMLAI 339 (1225)
Q Consensus 268 GY~IR~es---~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE-----R~~~tD~LL~l 339 (1225)
+--...-. ..-....|++||++.+...+.... ..+.++++|||||+|. |+.....++..
T Consensus 98 ~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~-------------~~l~~v~lvViDE~H~l~d~~rg~~le~il~r 164 (737)
T PRK02362 98 GISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGA-------------PWLDDITCVVVDEVHLIDSANRGPTLEVTLAK 164 (737)
T ss_pred EEEeCCcCccccccCCCCEEEECHHHHHHHHhcCh-------------hhhhhcCEEEEECccccCCCcchHHHHHHHHH
Confidence 43221111 111356899999999877776532 3689999999999994 33333444444
Q ss_pred HHHhCcCCCCceEEEEcccc-cHHHHHhhhCCCCeEecCCcccceeEEEe-hhhHHhhhhccccccccccccCCCCCcch
Q 000916 340 IRDMLPSYPHLRLILMSATL-DADRFSQYFGGCPVIQVPGFTYPVKSFYL-EDVLSILKSAESNHLDSASLIVPNEDPEL 417 (1225)
Q Consensus 340 Lk~ll~~~~~LKlILMSATl-d~~~Fs~yF~~~pvi~I~gr~~pV~~~yL-edil~~~~~~~~~~~~~~~~~~p~~~~~~ 417 (1225)
++ ...++.|+|+||||+ |++.+++|++. ..+....|+.|++.... .+.+ +
T Consensus 165 l~---~~~~~~qii~lSATl~n~~~la~wl~~-~~~~~~~rpv~l~~~v~~~~~~---------~--------------- 216 (737)
T PRK02362 165 LR---RLNPDLQVVALSATIGNADELADWLDA-ELVDSEWRPIDLREGVFYGGAI---------H--------------- 216 (737)
T ss_pred HH---hcCCCCcEEEEcccCCCHHHHHHHhCC-CcccCCCCCCCCeeeEecCCee---------c---------------
Confidence 44 345789999999999 89999999863 33333344444433211 0000 0
Q ss_pred hhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccch
Q 000916 418 TEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRT 497 (1225)
Q Consensus 418 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~ 497 (1225)
+.... .
T Consensus 217 --------------------------------------~~~~~------------------------------------~ 222 (737)
T PRK02362 217 --------------------------------------FDDSQ------------------------------------R 222 (737)
T ss_pred --------------------------------------ccccc------------------------------------c
Confidence 00000 0
Q ss_pred hhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHH
Q 000916 498 ALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKT 577 (1225)
Q Consensus 498 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l 577 (1225)
.+. ..+. ...+.++.+++ ...+.+|||+++..+++.+
T Consensus 223 ~~~------------------------------------~~~~-~~~~~~~~~~~------~~~~~~LVF~~sr~~~~~~ 259 (737)
T PRK02362 223 EVE------------------------------------VPSK-DDTLNLVLDTL------EEGGQCLVFVSSRRNAEGF 259 (737)
T ss_pred cCC------------------------------------Cccc-hHHHHHHHHHH------HcCCCeEEEEeCHHHHHHH
Confidence 000 0000 00001111111 1468999999999999988
Q ss_pred HHHHHcCCC--C------------------CCC---------CceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchh
Q 000916 578 RDRLLANPF--F------------------RDT---------SKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIA 628 (1225)
Q Consensus 578 ~~~L~~~~~--~------------------~~~---------~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIA 628 (1225)
++.|..... + .+. -...|..+||+|+.++|+.|++.+..|..+||+||+++
T Consensus 260 a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tl 339 (737)
T PRK02362 260 AKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTL 339 (737)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhh
Confidence 887754210 0 000 01358889999999999999999999999999999999
Q ss_pred ccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc---eEEEEecCHH-----HHhcCCCC
Q 000916 629 ETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA---GICYHLYSQL-----RAASLPDF 700 (1225)
Q Consensus 629 EtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~---G~CyrLys~~-----~~~~m~~~ 700 (1225)
++||++|++.+||+. .+.||+..+. .++|.+++.||+|||||.+- |.||-+.... .|..+...
T Consensus 340 a~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~ 410 (737)
T PRK02362 340 AAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA 410 (737)
T ss_pred hhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC
Confidence 999999999999965 2468765432 58999999999999999753 9999998642 13332211
Q ss_pred CCCcccccC------hhhHHHHHhhcCCC---CChhhhhh-hcCCCC------cHHHHHHHHHHHHHcCCCCCCCc---c
Q 000916 701 QVPEIKRIP------IEELCLQVKLLDPN---CNIEDFLQ-KTLDPP------VSVTIRNAIIVLQDIGALSLDEK---V 761 (1225)
Q Consensus 701 ~~PEI~R~p------L~~l~L~~K~l~~~---~~i~~fL~-~~ldPP------~~~av~~Al~~L~~lgALd~~e~---L 761 (1225)
.||-.... |.+.+|..-+.+.- .++.+||. .|+..+ -.+.|++|++.|.+.|+++.++. .
T Consensus 411 -~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~ 489 (737)
T PRK02362 411 -DPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEA 489 (737)
T ss_pred -CCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeE
Confidence 22222222 33333333333321 23556654 222222 23568999999999999987754 8
Q ss_pred cccccccccccCchhhhHHHHHHhhcC---ChhHHHHHhhc
Q 000916 762 TELGEKLGCLSVHPLMSKMLFFAILMD---CLDPALTLACA 799 (1225)
Q Consensus 762 T~LG~~La~LPvdp~lgKmLl~g~~~~---CldpiltIaA~ 799 (1225)
|++|+.++.++++|..++.++.+..-. -...+|.+.|.
T Consensus 490 t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~ 530 (737)
T PRK02362 490 TELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCS 530 (737)
T ss_pred ChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhc
Confidence 999999999999999999998775432 23345655553
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.98 E-value=2.7e-30 Score=320.40 Aligned_cols=316 Identities=19% Similarity=0.193 Sum_probs=225.4
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCC
Q 000916 186 SKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGD 265 (1225)
Q Consensus 186 ~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~ 265 (1225)
.--..+..|.+++..+.+++.||+.|+||||||..+.+++++.+.......+++|+.|+|.+|.++++.+..-.+...|.
T Consensus 25 G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i 104 (629)
T PRK11634 25 GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGV 104 (629)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCc
Confidence 33446677899999999999999999999999999999999887554445689999999999999999876554333344
Q ss_pred eEEEEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHH
Q 000916 266 NIGYKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAI 339 (1225)
Q Consensus 266 ~VGY~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~l 339 (1225)
.|.......+ .....+.|+++|+|.|++.|....+ .|+++++|||||+|+. ++..|+-.+
T Consensus 105 ~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l-------------~l~~l~~lVlDEAd~m-l~~gf~~di 170 (629)
T PRK11634 105 NVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTL-------------DLSKLSGLVLDEADEM-LRMGFIEDV 170 (629)
T ss_pred eEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCc-------------chhhceEEEeccHHHH-hhcccHHHH
Confidence 4433222211 1234578999999999999987642 6899999999999974 333343322
Q ss_pred HHHhCcCCCCceEEEEccccc--HHHHHh-hhCCCCeEecCCccc---ceeEEEehhhHHhhhhccccccccccccCCCC
Q 000916 340 IRDMLPSYPHLRLILMSATLD--ADRFSQ-YFGGCPVIQVPGFTY---PVKSFYLEDVLSILKSAESNHLDSASLIVPNE 413 (1225)
Q Consensus 340 Lk~ll~~~~~LKlILMSATld--~~~Fs~-yF~~~pvi~I~gr~~---pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~ 413 (1225)
...+-...++.++++||||+. ...+.+ |+.+...+.+..... .+...|..-
T Consensus 171 ~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v----------------------- 227 (629)
T PRK11634 171 ETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV----------------------- 227 (629)
T ss_pred HHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEe-----------------------
Confidence 222212234679999999994 334444 544433333321110 000000000
Q ss_pred CcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhcc
Q 000916 414 DPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAK 493 (1225)
Q Consensus 414 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~ 493 (1225)
T Consensus 228 -------------------------------------------------------------------------------- 227 (629)
T PRK11634 228 -------------------------------------------------------------------------------- 227 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHH
Q 000916 494 DGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWED 573 (1225)
Q Consensus 494 ~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~e 573 (1225)
... +....++. +........+|||+++..+
T Consensus 228 --------------------------------------------~~~-----~k~~~L~~-~L~~~~~~~~IVF~~tk~~ 257 (629)
T PRK11634 228 --------------------------------------------WGM-----RKNEALVR-FLEAEDFDAAIIFVRTKNA 257 (629)
T ss_pred --------------------------------------------chh-----hHHHHHHH-HHHhcCCCCEEEEeccHHH
Confidence 000 00001111 1122345789999999999
Q ss_pred HHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccC
Q 000916 574 INKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDP 653 (1225)
Q Consensus 574 I~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~ 653 (1225)
+..+.+.|.... +.+..|||.|++.+|.++++.+..|..+|||||++|++||+||+|.+||+++.
T Consensus 258 a~~l~~~L~~~g-------~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~-------- 322 (629)
T PRK11634 258 TLEVAEALERNG-------YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDI-------- 322 (629)
T ss_pred HHHHHHHHHhCC-------CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCC--------
Confidence 999999998654 67899999999999999999999999999999999999999999999998655
Q ss_pred CCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHHH
Q 000916 654 YNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLR 693 (1225)
Q Consensus 654 ~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~ 693 (1225)
+.+..+|.||.|||||.+. |.|+-+++...
T Consensus 323 ----------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 323 ----------PMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred ----------CCCHHHHHHHhccccCCCCcceEEEEechHH
Confidence 4567889999999999865 99999998643
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.98 E-value=2.3e-30 Score=310.79 Aligned_cols=330 Identities=22% Similarity=0.226 Sum_probs=230.0
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc----cCCccEEEEecchHHHHHHHHH
Q 000916 178 LRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS----KGETCKIVCTQPRRISATSVAE 253 (1225)
Q Consensus 178 ~~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~----~~~~~~IicTQPRRiaAisvAe 253 (1225)
+.+.+....--..+..|.+.+.++.+++.++++++||||||..+-.+++..+.. ....++++|+.|+|.+|.++++
T Consensus 12 l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~ 91 (434)
T PRK11192 12 LLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVAD 91 (434)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHH
Confidence 333344344444567899999999999999999999999999877777766532 2345799999999999999998
Q ss_pred HHHHHhCCccCCeEEEEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccc
Q 000916 254 RISVERGENIGDNIGYKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH 327 (1225)
Q Consensus 254 RVa~Erge~lG~~VGY~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvH 327 (1225)
.+ .+++...|..|+.-..... ....+.+|+++|+|+|++.+..... .+.++.+|||||+|
T Consensus 92 ~~-~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~-------------~~~~v~~lViDEah 157 (434)
T PRK11192 92 QA-RELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENF-------------DCRAVETLILDEAD 157 (434)
T ss_pred HH-HHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCc-------------CcccCCEEEEECHH
Confidence 65 4444555555554332211 1234668999999999999887642 68899999999999
Q ss_pred ccccchhHHHHHHHHhCcCCCCceEEEEcccccH---HHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccc
Q 000916 328 ERDRYSDFMLAIIRDMLPSYPHLRLILMSATLDA---DRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLD 404 (1225)
Q Consensus 328 ER~~~tD~LL~lLk~ll~~~~~LKlILMSATld~---~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~ 404 (1225)
|.++..|...+-+.....+...++++||||++. ..|.+.+.+.|+ ........ .
T Consensus 158 -~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~----------~i~~~~~~--------~---- 214 (434)
T PRK11192 158 -RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPV----------EVEAEPSR--------R---- 214 (434)
T ss_pred -HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCE----------EEEecCCc--------c----
Confidence 445544443333322233455789999999953 455555543222 11100000 0
Q ss_pred cccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhc
Q 000916 405 SASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSL 484 (1225)
Q Consensus 405 ~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~ 484 (1225)
.. ..+..+.+
T Consensus 215 ----------------~~----------------------------~~i~~~~~-------------------------- 224 (434)
T PRK11192 215 ----------------ER----------------------------KKIHQWYY-------------------------- 224 (434)
T ss_pred ----------------cc----------------------------cCceEEEE--------------------------
Confidence 00 00000000
Q ss_pred cccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeE
Q 000916 485 GADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAI 564 (1225)
Q Consensus 485 g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~I 564 (1225)
..+ +.+....++.++......+.+
T Consensus 225 ----------------------------------------------------~~~----~~~~k~~~l~~l~~~~~~~~~ 248 (434)
T PRK11192 225 ----------------------------------------------------RAD----DLEHKTALLCHLLKQPEVTRS 248 (434)
T ss_pred ----------------------------------------------------EeC----CHHHHHHHHHHHHhcCCCCeE
Confidence 000 000011223333344456899
Q ss_pred EEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCC
Q 000916 565 LVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSG 644 (1225)
Q Consensus 565 LVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG 644 (1225)
|||++..++++.+++.|.... +.+..+||+|+..+|..+++.+..|..+|+|||+++++||+||+|.+||+++
T Consensus 249 lVF~~s~~~~~~l~~~L~~~~-------~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 249 IVFVRTRERVHELAGWLRKAG-------INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred EEEeCChHHHHHHHHHHHhCC-------CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEEC
Confidence 999999999999999997643 6789999999999999999999999999999999999999999999999866
Q ss_pred CcccccccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHHHh
Q 000916 645 RMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLRAA 695 (1225)
Q Consensus 645 ~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~~~ 695 (1225)
. |.|...|.||.|||||.+ .|.|+.|++...+.
T Consensus 322 ~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~ 355 (434)
T PRK11192 322 M------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDHL 355 (434)
T ss_pred C------------------CCCHHHHhhcccccccCCCCceEEEEecHHHHH
Confidence 5 567788999999999975 49999999876653
No 20
>PTZ00110 helicase; Provisional
Probab=99.98 E-value=9.5e-31 Score=321.20 Aligned_cols=317 Identities=20% Similarity=0.212 Sum_probs=222.6
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc-----cCCccEEEEecchHHHHHHHHHHHHHHhCCccC
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS-----KGETCKIVCTQPRRISATSVAERISVERGENIG 264 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~-----~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG 264 (1225)
-+..|.+.+..+.+++.+|++++||||||+.+-.+++.+... .+....++|..|+|.+|.++.+.+ ..++...+
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~-~~~~~~~~ 231 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQC-NKFGASSK 231 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHH-HHHhcccC
Confidence 456788889999999999999999999999876666666542 223457899999999999998855 44444433
Q ss_pred CeEEEEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHH
Q 000916 265 DNIGYKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLA 338 (1225)
Q Consensus 265 ~~VGY~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~ 338 (1225)
-.+.-...... .......|+++|||.|++.|..+. ..|..+++||||||| |.++.+|...
T Consensus 232 i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~-------------~~l~~v~~lViDEAd-~mld~gf~~~ 297 (545)
T PTZ00110 232 IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV-------------TNLRRVTYLVLDEAD-RMLDMGFEPQ 297 (545)
T ss_pred ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC-------------CChhhCcEEEeehHH-hhhhcchHHH
Confidence 32221111111 112356899999999999998763 378999999999999 6677777665
Q ss_pred HHHHhCcCCCCceEEEEccccc--HHHHHhhhC-CCCeE-ecCCcccceeEEEehhhHHhhhhccccccccccccCCCCC
Q 000916 339 IIRDMLPSYPHLRLILMSATLD--ADRFSQYFG-GCPVI-QVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNED 414 (1225)
Q Consensus 339 lLk~ll~~~~~LKlILMSATld--~~~Fs~yF~-~~pvi-~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~ 414 (1225)
+.+.+-..+++.++|+||||+. .+.+++.|- ..|+. .+.... + .. .
T Consensus 298 i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~--l-----~~---------~-------------- 347 (545)
T PTZ00110 298 IRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD--L-----TA---------C-------------- 347 (545)
T ss_pred HHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc--c-----cc---------C--------------
Confidence 5554445568899999999994 455655443 22321 110000 0 00 0
Q ss_pred cchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccc
Q 000916 415 PELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKD 494 (1225)
Q Consensus 415 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~ 494 (1225)
. +..+ -+.+
T Consensus 348 ------------------------------------~---~i~q------~~~~-------------------------- 356 (545)
T PTZ00110 348 ------------------------------------H---NIKQ------EVFV-------------------------- 356 (545)
T ss_pred ------------------------------------C---CeeE------EEEE--------------------------
Confidence 0 0000 0000
Q ss_pred cchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHH
Q 000916 495 GRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDI 574 (1225)
Q Consensus 495 ~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI 574 (1225)
... .+ ....+..++..+.. ..+.+|||+++.+.+
T Consensus 357 -------~~~---~~----------------------------------k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a 390 (545)
T PTZ00110 357 -------VEE---HE----------------------------------KRGKLKMLLQRIMR--DGDKILIFVETKKGA 390 (545)
T ss_pred -------Eec---hh----------------------------------HHHHHHHHHHHhcc--cCCeEEEEecChHHH
Confidence 000 00 00112223333322 467999999999999
Q ss_pred HHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCC
Q 000916 575 NKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPY 654 (1225)
Q Consensus 575 ~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~ 654 (1225)
+.+.+.|.... +.++.+||.+++++|.++++.+..|..+|+|||++|++||+|++|.+||+++.
T Consensus 391 ~~l~~~L~~~g-------~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~--------- 454 (545)
T PTZ00110 391 DFLTKELRLDG-------WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDF--------- 454 (545)
T ss_pred HHHHHHHHHcC-------CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCC---------
Confidence 99999997543 56889999999999999999999999999999999999999999999998776
Q ss_pred CCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHH
Q 000916 655 NNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLR 693 (1225)
Q Consensus 655 ~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~ 693 (1225)
+-+..++.||+|||||.+ .|.||.||+...
T Consensus 455 ---------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~ 485 (545)
T PTZ00110 455 ---------PNQIEDYVHRIGRTGRAGAKGASYTFLTPDK 485 (545)
T ss_pred ---------CCCHHHHHHHhcccccCCCCceEEEEECcch
Confidence 456788999999999985 499999999754
No 21
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=1.6e-30 Score=311.15 Aligned_cols=309 Identities=17% Similarity=0.182 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhcc-------CCccEEEEecchHHHHHHHHHHHHHHhCCcc
Q 000916 191 SSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK-------GETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 191 ~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~-------~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
...|.+.+..+.+++.++++++||||||..+-.++++.+... ...+++++..|+|.+|.++++.+ ..++...
T Consensus 32 t~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~-~~l~~~~ 110 (423)
T PRK04837 32 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADA-EPLAQAT 110 (423)
T ss_pred CHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHH-HHHhccC
Confidence 467888999999999999999999999999988888876531 23478999999999999998754 5555566
Q ss_pred CCeEEEEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHH
Q 000916 264 GDNIGYKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFML 337 (1225)
Q Consensus 264 G~~VGY~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL 337 (1225)
|-.|+.-+..++ ......+|+++|||.|++.+.... -.|+++.+|||||||+ -++..|.-
T Consensus 111 ~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~-------------~~l~~v~~lViDEad~-l~~~~f~~ 176 (423)
T PRK04837 111 GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNH-------------INLGAIQVVVLDEADR-MFDLGFIK 176 (423)
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-------------cccccccEEEEecHHH-HhhcccHH
Confidence 666665554332 122356899999999999987653 2689999999999995 34444433
Q ss_pred HHHHHhCcCCC---CceEEEEcccccHH--HHH-hhhCCCCeEecCCcccc---eeEEEehhhHHhhhhccccccccccc
Q 000916 338 AIIRDMLPSYP---HLRLILMSATLDAD--RFS-QYFGGCPVIQVPGFTYP---VKSFYLEDVLSILKSAESNHLDSASL 408 (1225)
Q Consensus 338 ~lLk~ll~~~~---~LKlILMSATld~~--~Fs-~yF~~~pvi~I~gr~~p---V~~~yLedil~~~~~~~~~~~~~~~~ 408 (1225)
.+ +.++...| ..+.++||||+... .+. .++++...+.+...... ++..+.
T Consensus 177 ~i-~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~-------------------- 235 (423)
T PRK04837 177 DI-RWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELF-------------------- 235 (423)
T ss_pred HH-HHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEE--------------------
Confidence 22 33333222 44578999999543 333 34433222221110000 000000
Q ss_pred cCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccc
Q 000916 409 IVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADC 488 (1225)
Q Consensus 409 ~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~ 488 (1225)
|
T Consensus 236 -----------------------------------------------~-------------------------------- 236 (423)
T PRK04837 236 -----------------------------------------------Y-------------------------------- 236 (423)
T ss_pred -----------------------------------------------e--------------------------------
Confidence 0
Q ss_pred hhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEc
Q 000916 489 QLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFL 568 (1225)
Q Consensus 489 ~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFL 568 (1225)
. ... +. ..++..+ ......+.+|||+
T Consensus 237 -------------~---~~~--------------------------------~k--~~~l~~l----l~~~~~~~~lVF~ 262 (423)
T PRK04837 237 -------------P---SNE--------------------------------EK--MRLLQTL----IEEEWPDRAIIFA 262 (423)
T ss_pred -------------C---CHH--------------------------------HH--HHHHHHH----HHhcCCCeEEEEE
Confidence 0 000 00 0111222 2223467899999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCccc
Q 000916 569 PGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKE 648 (1225)
Q Consensus 569 pG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke 648 (1225)
++...++.+.+.|.... +.+..+||.|+.++|.++++.+..|..+|+||||++++||+||+|.+||+++.
T Consensus 263 ~t~~~~~~l~~~L~~~g-------~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~--- 332 (423)
T PRK04837 263 NTKHRCEEIWGHLAADG-------HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL--- 332 (423)
T ss_pred CCHHHHHHHHHHHHhCC-------CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCC---
Confidence 99999999999997643 67899999999999999999999999999999999999999999999998766
Q ss_pred ccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHHH
Q 000916 649 KSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLR 693 (1225)
Q Consensus 649 ~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~ 693 (1225)
|-|..+|.||+|||||.+. |.|+.|+++..
T Consensus 333 ---------------P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~ 363 (423)
T PRK04837 333 ---------------PDDCEDYVHRIGRTGRAGASGHSISLACEEY 363 (423)
T ss_pred ---------------CCchhheEeccccccCCCCCeeEEEEeCHHH
Confidence 4466788899999999865 99999999864
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.97 E-value=5.3e-30 Score=309.28 Aligned_cols=314 Identities=18% Similarity=0.181 Sum_probs=219.4
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhcc------CCccEEEEecchHHHHHHHHHHHHHHhCCcc
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK------GETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~------~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
.+..|.+++..+.+++.+|++++||||||..+..++++.+... ...+++++..|+|.+|.++.+.+... ...+
T Consensus 24 pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~-~~~~ 102 (456)
T PRK10590 24 PTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY-SKYL 102 (456)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH-hccC
Confidence 4577889999999999999999999999999988888876431 12458999999999999999877543 2233
Q ss_pred CCeEEEEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHH
Q 000916 264 GDNIGYKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFML 337 (1225)
Q Consensus 264 G~~VGY~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL 337 (1225)
+..+..-+...+ .......|+|||+|.|+..+.... ..|+++.+||||||| +-++..|+.
T Consensus 103 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~-------------~~l~~v~~lViDEah-~ll~~~~~~ 168 (456)
T PRK10590 103 NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA-------------VKLDQVEILVLDEAD-RMLDMGFIH 168 (456)
T ss_pred CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC-------------cccccceEEEeecHH-HHhccccHH
Confidence 322211111111 123456899999999999887653 268999999999999 455555544
Q ss_pred HHHHHhCcCCCCceEEEEcccccH--HHHHh-hhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCC
Q 000916 338 AIIRDMLPSYPHLRLILMSATLDA--DRFSQ-YFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNED 414 (1225)
Q Consensus 338 ~lLk~ll~~~~~LKlILMSATld~--~~Fs~-yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~ 414 (1225)
.+.+.+-...++.++++||||+.. ..+.. ++.+...+.+..+....+.
T Consensus 169 ~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~----------------------------- 219 (456)
T PRK10590 169 DIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQ----------------------------- 219 (456)
T ss_pred HHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccc-----------------------------
Confidence 333322223356789999999953 44544 4443222222111000000
Q ss_pred cchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccc
Q 000916 415 PELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKD 494 (1225)
Q Consensus 415 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~ 494 (1225)
+..+. .+
T Consensus 220 --------------------------------------i~~~~---------~~-------------------------- 226 (456)
T PRK10590 220 --------------------------------------VTQHV---------HF-------------------------- 226 (456)
T ss_pred --------------------------------------eeEEE---------EE--------------------------
Confidence 00000 00
Q ss_pred cchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHH
Q 000916 495 GRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDI 574 (1225)
Q Consensus 495 ~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI 574 (1225)
. +..-...++.++........+|||+++..++
T Consensus 227 -------~-----------------------------------------~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~ 258 (456)
T PRK10590 227 -------V-----------------------------------------DKKRKRELLSQMIGKGNWQQVLVFTRTKHGA 258 (456)
T ss_pred -------c-----------------------------------------CHHHHHHHHHHHHHcCCCCcEEEEcCcHHHH
Confidence 0 0000001122222334457899999999999
Q ss_pred HHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCC
Q 000916 575 NKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPY 654 (1225)
Q Consensus 575 ~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~ 654 (1225)
+.+++.|.... +.+..+||+|++.++.++++.+..|..+|+|||+++++||+||+|.+||+++.
T Consensus 259 ~~l~~~L~~~g-------~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~--------- 322 (456)
T PRK10590 259 NHLAEQLNKDG-------IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYEL--------- 322 (456)
T ss_pred HHHHHHHHHCC-------CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCC---------
Confidence 99999997643 67889999999999999999999999999999999999999999999998766
Q ss_pred CCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHHH
Q 000916 655 NNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLR 693 (1225)
Q Consensus 655 ~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~ 693 (1225)
+.+..+|.||.|||||.+. |.|+.|++..+
T Consensus 323 ---------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d 353 (456)
T PRK10590 323 ---------PNVPEDYVHRIGRTGRAAATGEALSLVCVDE 353 (456)
T ss_pred ---------CCCHHHhhhhccccccCCCCeeEEEEecHHH
Confidence 4556789999999999765 99999998654
No 23
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.2e-31 Score=291.96 Aligned_cols=317 Identities=21% Similarity=0.218 Sum_probs=229.0
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCe
Q 000916 187 KLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDN 266 (1225)
Q Consensus 187 ~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~ 266 (1225)
+.|.-- |.+.|..+..++.||..++||||||-.+..+|++..+........+|.-|+|..|.++++.. +-+|..+|-.
T Consensus 82 ~~PT~I-Q~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~f-e~Lg~~iglr 159 (476)
T KOG0330|consen 82 KKPTKI-QSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQF-EALGSGIGLR 159 (476)
T ss_pred CCCchh-hhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHH-HHhccccCeE
Confidence 455543 45556666777888889999999999999999999998888889999999999999999955 4444444433
Q ss_pred EEEEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHH
Q 000916 267 IGYKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAII 340 (1225)
Q Consensus 267 VGY~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lL 340 (1225)
|---+...+ ..+++.+|++||||.|...|.+-.. ..|..++|+|+||++ |-+|.||.-.+=
T Consensus 160 ~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg------------f~le~lk~LVlDEAD-rlLd~dF~~~ld 226 (476)
T KOG0330|consen 160 VAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG------------FSLEQLKFLVLDEAD-RLLDMDFEEELD 226 (476)
T ss_pred EEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC------------ccHHHhHHHhhchHH-hhhhhhhHHHHH
Confidence 332232222 3467889999999999999984422 489999999999999 999999976554
Q ss_pred HHhCcCCCCceEEEEcccc--cHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchh
Q 000916 341 RDMLPSYPHLRLILMSATL--DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELT 418 (1225)
Q Consensus 341 k~ll~~~~~LKlILMSATl--d~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~ 418 (1225)
+.+-...+.-|.+|+|||| .+.++..--- .-||++---.- |
T Consensus 227 ~ILk~ip~erqt~LfsATMt~kv~kL~rasl----------~~p~~v~~s~k------y--------------------- 269 (476)
T KOG0330|consen 227 YILKVIPRERQTFLFSATMTKKVRKLQRASL----------DNPVKVAVSSK------Y--------------------- 269 (476)
T ss_pred HHHHhcCccceEEEEEeecchhhHHHHhhcc----------CCCeEEeccch------h---------------------
Confidence 4333344678999999999 4555542110 12222210000 0
Q ss_pred hhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchh
Q 000916 419 EENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTA 498 (1225)
Q Consensus 419 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a 498 (1225)
..++ .+
T Consensus 270 ----~tv~-------------~l--------------------------------------------------------- 275 (476)
T KOG0330|consen 270 ----QTVD-------------HL--------------------------------------------------------- 275 (476)
T ss_pred ----cchH-------------Hh---------------------------------------------------------
Confidence 0000 00
Q ss_pred hhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHH
Q 000916 499 LQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTR 578 (1225)
Q Consensus 499 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~ 578 (1225)
-+.|+.....++ |. .|-||.+...++.++||+........+.
T Consensus 276 --------------------------------kQ~ylfv~~k~K-~~-----yLV~ll~e~~g~s~iVF~~t~~tt~~la 317 (476)
T KOG0330|consen 276 --------------------------------KQTYLFVPGKDK-DT-----YLVYLLNELAGNSVIVFCNTCNTTRFLA 317 (476)
T ss_pred --------------------------------hhheEecccccc-ch-----hHHHHHHhhcCCcEEEEEeccchHHHHH
Confidence 001111100000 00 1123444445689999999999999998
Q ss_pred HHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcc
Q 000916 579 DRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVS 658 (1225)
Q Consensus 579 ~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s 658 (1225)
-.|...+ |..+||||.|++..|...|+.|..|.|.|++||+||.+|++||.|+.|||+..
T Consensus 318 ~~L~~lg-------~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDi------------- 377 (476)
T KOG0330|consen 318 LLLRNLG-------FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDI------------- 377 (476)
T ss_pred HHHHhcC-------cceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCC-------------
Confidence 8887654 78999999999999999999999999999999999999999999999998666
Q ss_pred cccccccCHhhHHhhcCccCCCcc-eEEEEecCHH
Q 000916 659 TLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQL 692 (1225)
Q Consensus 659 ~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~ 692 (1225)
|.+--.|.||.||+||++. |..+.|.|..
T Consensus 378 -----P~~skDYIHRvGRtaRaGrsG~~ItlVtqy 407 (476)
T KOG0330|consen 378 -----PTHSKDYIHRVGRTARAGRSGKAITLVTQY 407 (476)
T ss_pred -----CCcHHHHHHHcccccccCCCcceEEEEehh
Confidence 4455678999999999865 9999999983
No 24
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=1e-29 Score=322.31 Aligned_cols=448 Identities=15% Similarity=0.150 Sum_probs=286.3
Q ss_pred hHHHHHhhcCCCChHHHHHHHHH-HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHH
Q 000916 178 LRQIVEERSKLPISSFKDVITST-VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERIS 256 (1225)
Q Consensus 178 ~~~~~~~R~~LPi~~~r~eIl~a-I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa 256 (1225)
+.+.++.+.---.+++|.+.+.. +.+++.++|+++||||||.....+|++..... ..++++..|+|..|.+..+++.
T Consensus 12 ~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~aLa~q~~~~~~ 89 (720)
T PRK00254 12 IKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKALAEEKYREFK 89 (720)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHHHHHHHH
Confidence 34444444433457788888875 88999999999999999999988888886543 3589999999999999998875
Q ss_pred HHhCCccCCeEEEEEeecc---cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccccccc--
Q 000916 257 VERGENIGDNIGYKIRLES---KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDR-- 331 (1225)
Q Consensus 257 ~Erge~lG~~VGY~IR~es---~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~-- 331 (1225)
. . +.+|..|+.-...-+ ..-.+..|+++|++.+...+.... ..++++++|||||+|.-.-
T Consensus 90 ~-~-~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~-------------~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 90 D-W-EKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS-------------SWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred H-H-hhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc-------------hhhhcCCEEEEcCcCccCCcc
Confidence 4 2 235655654332111 111356899999999987765442 3789999999999995211
Q ss_pred chhHHHHHHHHhCcCCCCceEEEEcccc-cHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccC
Q 000916 332 YSDFMLAIIRDMLPSYPHLRLILMSATL-DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIV 410 (1225)
Q Consensus 332 ~tD~LL~lLk~ll~~~~~LKlILMSATl-d~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~ 410 (1225)
....+-.++..+ .++.|+|+||||+ |++.+++|++. +.+....|..|++...... .. .
T Consensus 155 rg~~le~il~~l---~~~~qiI~lSATl~n~~~la~wl~~-~~~~~~~rpv~l~~~~~~~--------~~---~------ 213 (720)
T PRK00254 155 RGATLEMILTHM---LGRAQILGLSATVGNAEELAEWLNA-ELVVSDWRPVKLRKGVFYQ--------GF---L------ 213 (720)
T ss_pred chHHHHHHHHhc---CcCCcEEEEEccCCCHHHHHHHhCC-ccccCCCCCCcceeeEecC--------Ce---e------
Confidence 111222233332 3468999999999 89999999863 4333334444433211100 00 0
Q ss_pred CCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchh
Q 000916 411 PNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQL 490 (1225)
Q Consensus 411 p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~ 490 (1225)
.+.
T Consensus 214 --------------------------------------------~~~--------------------------------- 216 (720)
T PRK00254 214 --------------------------------------------FWE--------------------------------- 216 (720)
T ss_pred --------------------------------------------ecc---------------------------------
Confidence 000
Q ss_pred hccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCC
Q 000916 491 KAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPG 570 (1225)
Q Consensus 491 ~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG 570 (1225)
++.. ......+ ..++.+++. .++.+|||+++
T Consensus 217 ---~~~~----------~~~~~~~------------------------------~~~~~~~i~------~~~~vLVF~~s 247 (720)
T PRK00254 217 ---DGKI----------ERFPNSW------------------------------ESLVYDAVK------KGKGALVFVNT 247 (720)
T ss_pred ---Ccch----------hcchHHH------------------------------HHHHHHHHH------hCCCEEEEEcC
Confidence 0000 0000000 001111221 35789999999
Q ss_pred HHHHHHHHHHHHcCC--CCC-------------------C-----CCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEe
Q 000916 571 WEDINKTRDRLLANP--FFR-------------------D-----TSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILS 624 (1225)
Q Consensus 571 ~~eI~~l~~~L~~~~--~~~-------------------~-----~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILA 624 (1225)
+.+++.++..|.... +.. + .-...|..+||+|++++|..|++.++.|..|||+|
T Consensus 248 r~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLva 327 (720)
T PRK00254 248 RRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITA 327 (720)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 999887766553210 000 0 00235899999999999999999999999999999
Q ss_pred cchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc---ceEEEEecCHHH----HhcC
Q 000916 625 TNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ---AGICYHLYSQLR----AASL 697 (1225)
Q Consensus 625 TNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~---~G~CyrLys~~~----~~~m 697 (1225)
|++++.||+||++.+||.... .|+.. ...+++.+++.||+|||||-+ .|.||-+.+... ++.+
T Consensus 328 T~tLa~Gvnipa~~vVI~~~~----~~~~~------~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~ 397 (720)
T PRK00254 328 TPTLSAGINLPAFRVIIRDTK----RYSNF------GWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERY 397 (720)
T ss_pred CcHHhhhcCCCceEEEECCce----EcCCC------CceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHH
Confidence 999999999999999996443 45421 223567789999999999954 499998875321 3322
Q ss_pred ---------CCCCCCcccccChhhHHHHHhhcCCCCChhhhhhhcC---CCCc----HHHHHHHHHHHHHcCCCCCCC--
Q 000916 698 ---------PDFQVPEIKRIPIEELCLQVKLLDPNCNIEDFLQKTL---DPPV----SVTIRNAIIVLQDIGALSLDE-- 759 (1225)
Q Consensus 698 ---------~~~~~PEI~R~pL~~l~L~~K~l~~~~~i~~fL~~~l---dPP~----~~av~~Al~~L~~lgALd~~e-- 759 (1225)
.....++.++..|-..+..-. ...-..+.+||..++ ..|+ .+.+++++..|.+.|.++.++
T Consensus 398 ~~~~pe~l~s~l~~es~l~~~ll~~i~~~~-~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~ 476 (720)
T PRK00254 398 IFGKPEKLFSMLSNESAFRSQVLALITNFG-VSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLED 476 (720)
T ss_pred HhCCchhhhccCCchHHHHHHHHHHHHhCC-CCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCC
Confidence 222233444444333322210 000013445665332 2244 356788999999999986432
Q ss_pred --cccccccccccccCchhhhHHHHHHhh----cCChhHHHHHhhcc
Q 000916 760 --KVTELGEKLGCLSVHPLMSKMLFFAIL----MDCLDPALTLACAS 800 (1225)
Q Consensus 760 --~LT~LG~~La~LPvdp~lgKmLl~g~~----~~CldpiltIaA~l 800 (1225)
..|+||+.++.++|+|..++++..+.- -.....+|-+.|..
T Consensus 477 ~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~ 523 (720)
T PRK00254 477 RFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIAST 523 (720)
T ss_pred CEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCC
Confidence 479999999999999999999876653 23455666666543
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=2.1e-29 Score=305.78 Aligned_cols=327 Identities=17% Similarity=0.222 Sum_probs=226.7
Q ss_pred hhhHHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccC-------CccEEEEecchHHHH
Q 000916 176 ANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKG-------ETCKIVCTQPRRISA 248 (1225)
Q Consensus 176 ~~~~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~-------~~~~IicTQPRRiaA 248 (1225)
+.+...+....---.+.+|.+.+..+.+++.+|++++||||||..+-..+++.+.... ...++++..|+|.+|
T Consensus 96 ~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa 175 (475)
T PRK01297 96 PELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELV 175 (475)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHH
Confidence 3344444444333468899999999999999999999999999999888888875421 146899999999999
Q ss_pred HHHHHHHHHHhCCccCCeEEEEEeecc-------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEE
Q 000916 249 TSVAERISVERGENIGDNIGYKIRLES-------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHI 321 (1225)
Q Consensus 249 isvAeRVa~Erge~lG~~VGY~IR~es-------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shV 321 (1225)
.++++.+ .++....|..|.--+...+ ......+|+++|+|+|+..+.... ..|+++++|
T Consensus 176 ~Q~~~~~-~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~-------------~~l~~l~~l 241 (475)
T PRK01297 176 VQIAKDA-AALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE-------------VHLDMVEVM 241 (475)
T ss_pred HHHHHHH-HHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC-------------cccccCceE
Confidence 9998866 4444444444332121111 113457899999999998876543 378999999
Q ss_pred EeccccccccchhHHHHHHHHhCcC---CCCceEEEEccccc--HHHHHhhhCCCCeE-ecCCcccceeEEEehhhHHhh
Q 000916 322 IVDEIHERDRYSDFMLAIIRDMLPS---YPHLRLILMSATLD--ADRFSQYFGGCPVI-QVPGFTYPVKSFYLEDVLSIL 395 (1225)
Q Consensus 322 IvDEvHER~~~tD~LL~lLk~ll~~---~~~LKlILMSATld--~~~Fs~yF~~~pvi-~I~gr~~pV~~~yLedil~~~ 395 (1225)
||||+|.- ++..|+ ..++.++.. ..+.++|++|||+. ...+.+.|...|++ .+.......
T Consensus 242 ViDEah~l-~~~~~~-~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------ 307 (475)
T PRK01297 242 VLDEADRM-LDMGFI-PQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVAS------------ 307 (475)
T ss_pred EechHHHH-HhcccH-HHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCC------------
Confidence 99999952 333332 223333332 34579999999984 44555544433322 111000000
Q ss_pred hhccccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCcc
Q 000916 396 KSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRV 475 (1225)
Q Consensus 396 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~ 475 (1225)
+ .+. ++ .....
T Consensus 308 ---------------~----------------------------------------~~~--~~-------~~~~~----- 318 (475)
T PRK01297 308 ---------------D----------------------------------------TVE--QH-------VYAVA----- 318 (475)
T ss_pred ---------------C----------------------------------------ccc--EE-------EEEec-----
Confidence 0 000 00 00000
Q ss_pred chhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHH
Q 000916 476 GDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKI 555 (1225)
Q Consensus 476 ~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I 555 (1225)
+.+ .+.++. .+
T Consensus 319 ---------------------------------------------------------------~~~--k~~~l~----~l 329 (475)
T PRK01297 319 ---------------------------------------------------------------GSD--KYKLLY----NL 329 (475)
T ss_pred ---------------------------------------------------------------chh--HHHHHH----HH
Confidence 000 001122 22
Q ss_pred HhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCC
Q 000916 556 CMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITID 635 (1225)
Q Consensus 556 ~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~ 635 (1225)
......+.+|||+++.++++.+.+.|.... +.+..+||+|+.++|.++++.+..|..+||||||++|+||+|+
T Consensus 330 l~~~~~~~~IVF~~s~~~~~~l~~~L~~~~-------~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 330 VTQNPWERVMVFANRKDEVRRIEERLVKDG-------INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHhcCCCeEEEEeCCHHHHHHHHHHHHHcC-------CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 223345689999999999999999987543 5688899999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHHH
Q 000916 636 DVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLR 693 (1225)
Q Consensus 636 dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~ 693 (1225)
+|.+||++|. |-|.+++.||.|||||.+. |.|+.+++..+
T Consensus 403 ~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 403 GISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred CCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 9999999876 5688999999999999864 99999998753
No 26
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=2.1e-29 Score=310.53 Aligned_cols=311 Identities=18% Similarity=0.202 Sum_probs=220.6
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhcc-------CCccEEEEecchHHHHHHHHHHHHHHhCCc
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK-------GETCKIVCTQPRRISATSVAERISVERGEN 262 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~-------~~~~~IicTQPRRiaAisvAeRVa~Erge~ 262 (1225)
.+..|.+.+..+.+++.||++++||||||..+-.++++.+... ...++++|+.|+|.+|.++++++ ..++..
T Consensus 32 ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~-~~l~~~ 110 (572)
T PRK04537 32 CTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDA-VKFGAD 110 (572)
T ss_pred CCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHH-HHHhcc
Confidence 3567888999999999999999999999999988888876431 12478999999999999999874 556666
Q ss_pred cCCeEEEEEeeccc------CCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHH
Q 000916 263 IGDNIGYKIRLESK------GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFM 336 (1225)
Q Consensus 263 lG~~VGY~IR~es~------~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~L 336 (1225)
+|-.|+..+...+. ......|+++|+|.|++.|..... ..|..+++|||||+|.. ++..|.
T Consensus 111 ~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~------------~~l~~v~~lViDEAh~l-ld~gf~ 177 (572)
T PRK04537 111 LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKV------------VSLHACEICVLDEADRM-FDLGFI 177 (572)
T ss_pred CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccc------------cchhheeeeEecCHHHH-hhcchH
Confidence 66666654432221 223468999999999999876421 25789999999999953 333333
Q ss_pred HHHHHHh---CcCCCCceEEEEcccccHH--HHH-hhhCCCCeEecCCcccce---eEEEehhhHHhhhhcccccccccc
Q 000916 337 LAIIRDM---LPSYPHLRLILMSATLDAD--RFS-QYFGGCPVIQVPGFTYPV---KSFYLEDVLSILKSAESNHLDSAS 407 (1225)
Q Consensus 337 L~lLk~l---l~~~~~LKlILMSATld~~--~Fs-~yF~~~pvi~I~gr~~pV---~~~yLedil~~~~~~~~~~~~~~~ 407 (1225)
.. ++.+ ++.+.+.++|+||||+... .+. .|+.....+.+....... ..+|.
T Consensus 178 ~~-i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~------------------- 237 (572)
T PRK04537 178 KD-IRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY------------------- 237 (572)
T ss_pred HH-HHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEE-------------------
Confidence 22 2222 2333367999999999543 333 344321111111110000 00000
Q ss_pred ccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhcccc
Q 000916 408 LIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGAD 487 (1225)
Q Consensus 408 ~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~ 487 (1225)
+
T Consensus 238 ------------------------------------------------------------~------------------- 238 (572)
T PRK04537 238 ------------------------------------------------------------F------------------- 238 (572)
T ss_pred ------------------------------------------------------------e-------------------
Confidence 0
Q ss_pred chhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEE
Q 000916 488 CQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVF 567 (1225)
Q Consensus 488 ~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVF 567 (1225)
. .+. +.+. ++..+........+|||
T Consensus 239 --------------~-----------------------------------~~~-----~k~~-~L~~ll~~~~~~k~LVF 263 (572)
T PRK04537 239 --------------P-----------------------------------ADE-----EKQT-LLLGLLSRSEGARTMVF 263 (572)
T ss_pred --------------c-----------------------------------CHH-----HHHH-HHHHHHhcccCCcEEEE
Confidence 0 000 0000 11122223356789999
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcc
Q 000916 568 LPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMK 647 (1225)
Q Consensus 568 LpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~K 647 (1225)
+++...++.+++.|.... +.+..|||+|+..+|.++++.+..|..+|||||+++|+||+||+|.+||+++.
T Consensus 264 ~nt~~~ae~l~~~L~~~g-------~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~-- 334 (572)
T PRK04537 264 VNTKAFVERVARTLERHG-------YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDL-- 334 (572)
T ss_pred eCCHHHHHHHHHHHHHcC-------CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCC--
Confidence 999999999999997653 67999999999999999999999999999999999999999999999998765
Q ss_pred cccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHHH
Q 000916 648 EKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLR 693 (1225)
Q Consensus 648 e~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~ 693 (1225)
+.|..+|.||.|||||.+. |.|+.|++...
T Consensus 335 ----------------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 335 ----------------PFDAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred ----------------CCCHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 5677889999999999765 99999998754
No 27
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=2e-29 Score=299.27 Aligned_cols=314 Identities=17% Similarity=0.206 Sum_probs=217.2
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEE
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGY 269 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY 269 (1225)
.+..|.+.+..+.+++.++++++||||||+.+...+++........+++++..|+|.+|.++.+.+ ...+..++..++.
T Consensus 51 ~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~-~~~~~~~~~~~~~ 129 (401)
T PTZ00424 51 PSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVV-LALGDYLKVRCHA 129 (401)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHH-HHHhhhcCceEEE
Confidence 356788899999999999999999999999988888877543334578999999999999987644 3444444333332
Q ss_pred EEeec------ccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHh
Q 000916 270 KIRLE------SKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDM 343 (1225)
Q Consensus 270 ~IR~e------s~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~l 343 (1225)
.+... ........|+++|+|.|++.+.... ..++++++|||||+|.- .+..+--.+...+
T Consensus 130 ~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-------------~~l~~i~lvViDEah~~-~~~~~~~~~~~i~ 195 (401)
T PTZ00424 130 CVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH-------------LRVDDLKLFILDEADEM-LSRGFKGQIYDVF 195 (401)
T ss_pred EECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC-------------cccccccEEEEecHHHH-HhcchHHHHHHHH
Confidence 22111 1122346899999999999998653 26899999999999952 2222221122222
Q ss_pred CcCCCCceEEEEcccccH--HHHHhhhCCCCe-EecCCcccc---eeEEEehhhHHhhhhccccccccccccCCCCCcch
Q 000916 344 LPSYPHLRLILMSATLDA--DRFSQYFGGCPV-IQVPGFTYP---VKSFYLEDVLSILKSAESNHLDSASLIVPNEDPEL 417 (1225)
Q Consensus 344 l~~~~~LKlILMSATld~--~~Fs~yF~~~pv-i~I~gr~~p---V~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~ 417 (1225)
....++.++|+||||+.. ..+...|...|. +.++..... ++.+|..
T Consensus 196 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 247 (401)
T PTZ00424 196 KKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVA---------------------------- 247 (401)
T ss_pred hhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEe----------------------------
Confidence 223468999999999943 334444433221 111110000 0000000
Q ss_pred hhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccch
Q 000916 418 TEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRT 497 (1225)
Q Consensus 418 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~ 497 (1225)
T Consensus 248 -------------------------------------------------------------------------------- 247 (401)
T PTZ00424 248 -------------------------------------------------------------------------------- 247 (401)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHH
Q 000916 498 ALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKT 577 (1225)
Q Consensus 498 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l 577 (1225)
.+.+....+. +..+......+.+|||+++.+.++.+
T Consensus 248 ----------------------------------------~~~~~~~~~~----l~~~~~~~~~~~~ivF~~t~~~~~~l 283 (401)
T PTZ00424 248 ----------------------------------------VEKEEWKFDT----LCDLYETLTITQAIIYCNTRRKVDYL 283 (401)
T ss_pred ----------------------------------------cChHHHHHHH----HHHHHHhcCCCeEEEEecCcHHHHHH
Confidence 0000000001 11112222346789999999999999
Q ss_pred HHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCc
Q 000916 578 RDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNV 657 (1225)
Q Consensus 578 ~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~ 657 (1225)
.+.|.... +.+..+||+|+..+|..+++.+..|..+|++||++++.||+||+|.+||+.+.
T Consensus 284 ~~~l~~~~-------~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~------------ 344 (401)
T PTZ00424 284 TKKMHERD-------FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDL------------ 344 (401)
T ss_pred HHHHHHCC-------CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECC------------
Confidence 99987542 67899999999999999999999999999999999999999999999998665
Q ss_pred ccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHHHh
Q 000916 658 STLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLRAA 695 (1225)
Q Consensus 658 s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~~~ 695 (1225)
+.|.+++.||.|||||.+ .|.||.|++.....
T Consensus 345 ------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 345 ------PASPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred ------CCCHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 567889999999999975 59999999986654
No 28
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=297.68 Aligned_cols=316 Identities=21% Similarity=0.277 Sum_probs=230.7
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc------cCCccEEEEecchHHHHHHHHHHHHHHhCCccC--C
Q 000916 194 KDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS------KGETCKIVCTQPRRISATSVAERISVERGENIG--D 265 (1225)
Q Consensus 194 r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~------~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG--~ 265 (1225)
|.+-...+.+++.+|..+.||||||..+-.+++.++.. ++....++|.-|+|.+|.+|.+ ++.+.+..++ .
T Consensus 118 Qaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~-~~~~~~~~~~~~~ 196 (519)
T KOG0331|consen 118 QAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQA-EAREFGKSLRLRS 196 (519)
T ss_pred hhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHH-HHHHHcCCCCccE
Confidence 44556667888999999999999999888887777653 4456689999999999999987 7788887776 3
Q ss_pred eEEEE-Eee---cccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHH
Q 000916 266 NIGYK-IRL---ESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIR 341 (1225)
Q Consensus 266 ~VGY~-IR~---es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk 341 (1225)
++=|+ ++. .........|+++|||+|+..|..+.+ .|++++|+|+|||+ |.++++|--.+-+
T Consensus 197 ~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~-------------~l~~v~ylVLDEAD-rMldmGFe~qI~~ 262 (519)
T KOG0331|consen 197 TCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSL-------------NLSRVTYLVLDEAD-RMLDMGFEPQIRK 262 (519)
T ss_pred EEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCc-------------cccceeEEEeccHH-hhhccccHHHHHH
Confidence 33332 111 112234567999999999999998754 79999999999999 8999998766666
Q ss_pred HhCcC-CCCceEEEEcccc--cHHHHHhhhCCCCeEecCCcccceeEEEehh-hHHhhhhccccccccccccCCCCCcch
Q 000916 342 DMLPS-YPHLRLILMSATL--DADRFSQYFGGCPVIQVPGFTYPVKSFYLED-VLSILKSAESNHLDSASLIVPNEDPEL 417 (1225)
Q Consensus 342 ~ll~~-~~~LKlILMSATl--d~~~Fs~yF~~~pvi~I~gr~~pV~~~yLed-il~~~~~~~~~~~~~~~~~~p~~~~~~ 417 (1225)
.+-.. +++-++|+.|||+ .+..|++=|-+-| +++..... .+.
T Consensus 263 Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~----------~~i~ig~~~~~~------------------------ 308 (519)
T KOG0331|consen 263 ILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNP----------IQINVGNKKELK------------------------ 308 (519)
T ss_pred HHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCc----------eEEEecchhhhh------------------------
Confidence 55555 4555799999999 4566766443222 22211100 000
Q ss_pred hhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccch
Q 000916 418 TEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRT 497 (1225)
Q Consensus 418 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~ 497 (1225)
| +...
T Consensus 309 ----------a------~~~i----------------------------------------------------------- 313 (519)
T KOG0331|consen 309 ----------A------NHNI----------------------------------------------------------- 313 (519)
T ss_pred ----------h------hcch-----------------------------------------------------------
Confidence 0 0000
Q ss_pred hhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHH
Q 000916 498 ALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKT 577 (1225)
Q Consensus 498 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l 577 (1225)
.++++.+... -....+..+|..+. ...+|.||||+.+...+++|
T Consensus 314 ----------~qive~~~~~-------------------------~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l 357 (519)
T KOG0331|consen 314 ----------RQIVEVCDET-------------------------AKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDEL 357 (519)
T ss_pred ----------hhhhhhcCHH-------------------------HHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHH
Confidence 0000000000 00123445555555 55789999999999999999
Q ss_pred HHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCc
Q 000916 578 RDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNV 657 (1225)
Q Consensus 578 ~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~ 657 (1225)
...|.... +.+..|||.+++.+|..+++.++.|..+|+||||+|.+||+||||++||+ ||+.++
T Consensus 358 ~~~l~~~~-------~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------ydfP~~- 421 (519)
T KOG0331|consen 358 ARNLRRKG-------WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YDFPNN- 421 (519)
T ss_pred HHHHHhcC-------cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe--------CCCCCC-
Confidence 99887643 77999999999999999999999999999999999999999999999998 444444
Q ss_pred ccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHHH
Q 000916 658 STLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLRA 694 (1225)
Q Consensus 658 s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~~ 694 (1225)
-..|.||.||+||.+ .|..|.+|+...+
T Consensus 422 ---------vEdYVHRiGRTGRa~~~G~A~tfft~~~~ 450 (519)
T KOG0331|consen 422 ---------VEDYVHRIGRTGRAGKKGTAITFFTSDNA 450 (519)
T ss_pred ---------HHHHHhhcCccccCCCCceEEEEEeHHHH
Confidence 457789999999954 5999999998665
No 29
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.97 E-value=3.4e-29 Score=306.38 Aligned_cols=314 Identities=15% Similarity=0.193 Sum_probs=220.6
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc-------cCCccEEEEecchHHHHHHHHHHHHHHhCCc
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS-------KGETCKIVCTQPRRISATSVAERISVERGEN 262 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~-------~~~~~~IicTQPRRiaAisvAeRVa~Erge~ 262 (1225)
-+..|.+.+.++.+++.++++++||||||..+-.+++..+.. .+...++++..|+|.+|.++.+.+ ..++..
T Consensus 144 ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~-~~l~~~ 222 (518)
T PLN00206 144 PTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQA-KVLGKG 222 (518)
T ss_pred CCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHH-HHHhCC
Confidence 456788899999999999999999999999988888877542 224568999999999999987754 445444
Q ss_pred cCCeEEEEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHH
Q 000916 263 IGDNIGYKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFM 336 (1225)
Q Consensus 263 lG~~VGY~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~L 336 (1225)
++..+..-+..+. .......|+++|||.|+..|.... ..|+++++|||||||. -++..|-
T Consensus 223 ~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~-------------~~l~~v~~lViDEad~-ml~~gf~ 288 (518)
T PLN00206 223 LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHD-------------IELDNVSVLVLDEVDC-MLERGFR 288 (518)
T ss_pred CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCC-------------ccchheeEEEeecHHH-HhhcchH
Confidence 4433322222221 123456899999999999987653 3789999999999994 3333332
Q ss_pred HHHHHHhCcCCCCceEEEEcccc--cHHHHHhhhCCCCeE-ecCCcccc---eeEEEehhhHHhhhhccccccccccccC
Q 000916 337 LAIIRDMLPSYPHLRLILMSATL--DADRFSQYFGGCPVI-QVPGFTYP---VKSFYLEDVLSILKSAESNHLDSASLIV 410 (1225)
Q Consensus 337 L~lLk~ll~~~~~LKlILMSATl--d~~~Fs~yF~~~pvi-~I~gr~~p---V~~~yLedil~~~~~~~~~~~~~~~~~~ 410 (1225)
- .+..++...++.++|+||||+ +.+.+.+.|...++. .+....-+ ++.+++
T Consensus 289 ~-~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~---------------------- 345 (518)
T PLN00206 289 D-QVMQIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAI---------------------- 345 (518)
T ss_pred H-HHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEE----------------------
Confidence 2 223333344678999999999 456777776543332 21110000 000000
Q ss_pred CCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchh
Q 000916 411 PNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQL 490 (1225)
Q Consensus 411 p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~ 490 (1225)
T Consensus 346 -------------------------------------------------------------------------------- 345 (518)
T PLN00206 346 -------------------------------------------------------------------------------- 345 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCC
Q 000916 491 KAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPG 570 (1225)
Q Consensus 491 ~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG 570 (1225)
|.... . + ...+.+++... ....+.+|||+++
T Consensus 346 ----------~~~~~---~------k----------------------------~~~l~~~l~~~--~~~~~~~iVFv~s 376 (518)
T PLN00206 346 ----------WVETK---Q------K----------------------------KQKLFDILKSK--QHFKPPAVVFVSS 376 (518)
T ss_pred ----------eccch---h------H----------------------------HHHHHHHHHhh--cccCCCEEEEcCC
Confidence 00000 0 0 00011111111 1124679999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCccccc
Q 000916 571 WEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKS 650 (1225)
Q Consensus 571 ~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~ 650 (1225)
...++.+.+.|... ..+.+..+||+|+.++|..+++.+..|..+|+|||+++++||+||+|.+||+++.
T Consensus 377 ~~~a~~l~~~L~~~------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~----- 445 (518)
T PLN00206 377 RLGADLLANAITVV------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDM----- 445 (518)
T ss_pred chhHHHHHHHHhhc------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCC-----
Confidence 99999999888642 1367899999999999999999999999999999999999999999999998665
Q ss_pred ccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHHH
Q 000916 651 YDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLRA 694 (1225)
Q Consensus 651 yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~~ 694 (1225)
|.|..+|.||.|||||.+ .|.|+.+++....
T Consensus 446 -------------P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 446 -------------PNTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred -------------CCCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 567889999999999987 4999999987543
No 30
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.6e-28 Score=296.08 Aligned_cols=310 Identities=24% Similarity=0.323 Sum_probs=227.9
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc-cCCccE-EEEecchHHHHHHHHHHHHHHhCCcc-CCe
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS-KGETCK-IVCTQPRRISATSVAERISVERGENI-GDN 266 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~-~~~~~~-IicTQPRRiaAisvAeRVa~Erge~l-G~~ 266 (1225)
....|...+..+..++.|++.+.||||||..+-.++++.... ...... .+|.-|+|.+|.++++- +..++... +-.
T Consensus 52 pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~-~~~~~~~~~~~~ 130 (513)
T COG0513 52 PTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEE-LRKLGKNLGGLR 130 (513)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHH-HHHHHhhcCCcc
Confidence 345577788888888999999999999999999999999652 122222 89999999999999984 45555444 333
Q ss_pred EEEEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHH
Q 000916 267 IGYKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAII 340 (1225)
Q Consensus 267 VGY~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lL 340 (1225)
+...+...+ ......+|+++|||.|+..+....+ .|+++.++|+||++ |.++..|.=.+-
T Consensus 131 ~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l-------------~l~~v~~lVlDEAD-rmLd~Gf~~~i~ 196 (513)
T COG0513 131 VAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKL-------------DLSGVETLVLDEAD-RMLDMGFIDDIE 196 (513)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCc-------------chhhcCEEEeccHh-hhhcCCCHHHHH
Confidence 444443322 1223578999999999999987643 79999999999999 677877766665
Q ss_pred HHhCcCCCCceEEEEcccccH--HHHHhhhCCCCe-EecCCc-----ccceeEEEehhhHHhhhhccccccccccccCCC
Q 000916 341 RDMLPSYPHLRLILMSATLDA--DRFSQYFGGCPV-IQVPGF-----TYPVKSFYLEDVLSILKSAESNHLDSASLIVPN 412 (1225)
Q Consensus 341 k~ll~~~~~LKlILMSATld~--~~Fs~yF~~~pv-i~I~gr-----~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~ 412 (1225)
+.+-...++.+++++|||++. ..+++-|-..|+ |.+.-. .-.|+.+|+.
T Consensus 197 ~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~----------------------- 253 (513)
T COG0513 197 KILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLE----------------------- 253 (513)
T ss_pred HHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEE-----------------------
Confidence 555445558999999999953 445543333332 222200 0011111110
Q ss_pred CCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhc
Q 000916 413 EDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKA 492 (1225)
Q Consensus 413 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~ 492 (1225)
T Consensus 254 -------------------------------------------------------------------------------- 253 (513)
T COG0513 254 -------------------------------------------------------------------------------- 253 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHH
Q 000916 493 KDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWE 572 (1225)
Q Consensus 493 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~ 572 (1225)
++.+ +.-.++|.+++.....+.+|||+.+..
T Consensus 254 ---------------------------------------------v~~~----~~k~~~L~~ll~~~~~~~~IVF~~tk~ 284 (513)
T COG0513 254 ---------------------------------------------VESE----EEKLELLLKLLKDEDEGRVIVFVRTKR 284 (513)
T ss_pred ---------------------------------------------eCCH----HHHHHHHHHHHhcCCCCeEEEEeCcHH
Confidence 0000 001234445555566678999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCccccccc
Q 000916 573 DINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYD 652 (1225)
Q Consensus 573 eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd 652 (1225)
.++.+...|...+ +.+..|||.|++++|.++++.|..|..+|+|||+||.+||+||+|.+||++..
T Consensus 285 ~~~~l~~~l~~~g-------~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~------- 350 (513)
T COG0513 285 LVEELAESLRKRG-------FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDL------- 350 (513)
T ss_pred HHHHHHHHHHHCC-------CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccC-------
Confidence 9999999998764 78999999999999999999999999999999999999999999999998665
Q ss_pred CCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCH
Q 000916 653 PYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQ 691 (1225)
Q Consensus 653 ~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~ 691 (1225)
|-+...|.||.||+||.+. |.++.|++.
T Consensus 351 -----------p~~~e~yvHRiGRTgRaG~~G~ai~fv~~ 379 (513)
T COG0513 351 -----------PLDPEDYVHRIGRTGRAGRKGVAISFVTE 379 (513)
T ss_pred -----------CCCHHHheeccCccccCCCCCeEEEEeCc
Confidence 3455677899999999865 999999985
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.96 E-value=5.4e-28 Score=305.21 Aligned_cols=340 Identities=16% Similarity=0.128 Sum_probs=226.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhC
Q 000916 181 IVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERG 260 (1225)
Q Consensus 181 ~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erg 260 (1225)
.++.+.---.|.+|.+.++++.+++.||++++||||||..+-.++++.+.. ...+++++.-|+|.+|.++.+++.. ++
T Consensus 28 ~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~-l~ 105 (742)
T TIGR03817 28 ALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRE-LT 105 (742)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHH-hc
Confidence 333344345688999999999999999999999999999999999988754 3457899999999999999998754 33
Q ss_pred CccCCeEEEEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccccc-cc--
Q 000916 261 ENIGDNIGYKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHER-DR-- 331 (1225)
Q Consensus 261 e~lG~~VGY~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER-~~-- 331 (1225)
..|-.++-- ..+. ....+.+|+++||++|...+.... ......|+++++|||||+|+- +.
T Consensus 106 -~~~i~v~~~-~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~---------~~~~~~l~~l~~vViDEah~~~g~fg 174 (742)
T TIGR03817 106 -LRGVRPATY-DGDTPTEERRWAREHARYVLTNPDMLHRGILPSH---------ARWARFLRRLRYVVIDECHSYRGVFG 174 (742)
T ss_pred -cCCeEEEEE-eCCCCHHHHHHHhcCCCEEEEChHHHHHhhccch---------hHHHHHHhcCCEEEEeChhhccCccH
Confidence 223223211 1111 122457899999999986554321 011135899999999999973 22
Q ss_pred -chhHHHHHHHHhCcCC-CCceEEEEcccc-cHHHHHhhhCCCCeEecCCcccc---eeEEEehhhHHhhhhcccccccc
Q 000916 332 -YSDFMLAIIRDMLPSY-PHLRLILMSATL-DADRFSQYFGGCPVIQVPGFTYP---VKSFYLEDVLSILKSAESNHLDS 405 (1225)
Q Consensus 332 -~tD~LL~lLk~ll~~~-~~LKlILMSATl-d~~~Fs~yF~~~pvi~I~gr~~p---V~~~yLedil~~~~~~~~~~~~~ 405 (1225)
+...++..|+.+.... .+.++|++|||+ |...+.+.+.+.|+..|....-| .+..+....+
T Consensus 175 ~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~------------- 241 (742)
T TIGR03817 175 SHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPL------------- 241 (742)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCc-------------
Confidence 2223444455544432 468999999999 66666665555555444322111 1111111000
Q ss_pred ccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhcc
Q 000916 406 ASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLG 485 (1225)
Q Consensus 406 ~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g 485 (1225)
.... ... +
T Consensus 242 ------------------------------------------------~~~~-~~~-----------------------~ 249 (742)
T TIGR03817 242 ------------------------------------------------TELT-GEN-----------------------G 249 (742)
T ss_pred ------------------------------------------------cccc-ccc-----------------------c
Confidence 0000 000 0
Q ss_pred ccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEE
Q 000916 486 ADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAIL 565 (1225)
Q Consensus 486 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~IL 565 (1225)
.. . ......+ ..+++.+++. ....+|
T Consensus 250 ~~-------------~-r~~~~~~----------------------------------~~~~l~~l~~------~~~~~I 275 (742)
T TIGR03817 250 AP-------------V-RRSASAE----------------------------------AADLLADLVA------EGARTL 275 (742)
T ss_pred cc-------------c-ccchHHH----------------------------------HHHHHHHHHH------CCCCEE
Confidence 00 0 0000000 0012222222 257899
Q ss_pred EEcCCHHHHHHHHHHHHcCCC-CCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCC
Q 000916 566 VFLPGWEDINKTRDRLLANPF-FRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSG 644 (1225)
Q Consensus 566 VFLpG~~eI~~l~~~L~~~~~-~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG 644 (1225)
||+++...++.+...|..... ........|..+||++++++|+++.+.+..|..+||||||++|+||+|++|.+||..|
T Consensus 276 VF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~ 355 (742)
T TIGR03817 276 TFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAG 355 (742)
T ss_pred EEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeC
Confidence 999999999999988764210 0001125688999999999999999999999999999999999999999999999988
Q ss_pred CcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecC
Q 000916 645 RMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYS 690 (1225)
Q Consensus 645 ~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys 690 (1225)
. |-|.+++.||.|||||.+. |.++-+.+
T Consensus 356 ~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 356 F------------------PGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred C------------------CCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 6 5678999999999999865 99998876
No 32
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.95 E-value=3.3e-26 Score=294.22 Aligned_cols=395 Identities=18% Similarity=0.196 Sum_probs=244.8
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhcc------CCccEEEEecchHHHHHHHHHHHH-------
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK------GETCKIVCTQPRRISATSVAERIS------- 256 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~------~~~~~IicTQPRRiaAisvAeRVa------- 256 (1225)
.+..|.+.+..+.+++.++|+++||||||..+..++++.+... ...+++++..|+|..|.++.+++-
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999999999999999999876531 235689999999999999887643
Q ss_pred ---HHhCCcc-CCeEEEEEeeccc--------CCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEec
Q 000916 257 ---VERGENI-GDNIGYKIRLESK--------GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVD 324 (1225)
Q Consensus 257 ---~Erge~l-G~~VGY~IR~es~--------~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvD 324 (1225)
.+.|..+ +-.|+ ++.... ......|++|||+.|...|.+.. +...|+++.+||||
T Consensus 113 ~~~~~~g~~~~~i~v~--v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~-----------~~~~l~~l~~VVID 179 (876)
T PRK13767 113 EIAKERGEELPEIRVA--IRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPK-----------FREKLRTVKWVIVD 179 (876)
T ss_pred HHHHhcCCCcCCeeEE--EEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChh-----------HHHHHhcCCEEEEe
Confidence 2233333 22232 222111 11245899999999976664331 22368999999999
Q ss_pred cccc-----cccchhHHHHHHHHhCcCCCCceEEEEcccc-cHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhc
Q 000916 325 EIHE-----RDRYSDFMLAIIRDMLPSYPHLRLILMSATL-DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSA 398 (1225)
Q Consensus 325 EvHE-----R~~~tD~LL~lLk~ll~~~~~LKlILMSATl-d~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~ 398 (1225)
|||+ |+.....+|..|+.+. .+++++|++|||+ +.+.+++|+.+.... +..-|+... +.. +.
T Consensus 180 E~H~l~~~~RG~~l~~~L~rL~~l~--~~~~q~IglSATl~~~~~va~~L~~~~~~---~~~r~~~iv--~~~-----~~ 247 (876)
T PRK13767 180 EIHSLAENKRGVHLSLSLERLEELA--GGEFVRIGLSATIEPLEEVAKFLVGYEDD---GEPRDCEIV--DAR-----FV 247 (876)
T ss_pred chhhhccCccHHHHHHHHHHHHHhc--CCCCeEEEEecccCCHHHHHHHhcCcccc---CCCCceEEE--ccC-----CC
Confidence 9996 4444445555555554 3578999999999 678888887653211 111111110 000 00
Q ss_pred cccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchh
Q 000916 399 ESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDV 478 (1225)
Q Consensus 399 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~ 478 (1225)
. .++ +.+... ..++
T Consensus 248 k--~~~-------------------------------------------------------------i~v~~p---~~~l 261 (876)
T PRK13767 248 K--PFD-------------------------------------------------------------IKVISP---VDDL 261 (876)
T ss_pred c--cce-------------------------------------------------------------EEEecc---Cccc
Confidence 0 000 000000 0000
Q ss_pred hhhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhc
Q 000916 479 CMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMD 558 (1225)
Q Consensus 479 ~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~ 558 (1225)
. +. +. . .+.. .+...|..+..
T Consensus 262 ---~----~~------------~~-----~---------------------------------~~~~-~l~~~L~~~i~- 282 (876)
T PRK13767 262 ---I----HT------------PA-----E---------------------------------EISE-ALYETLHELIK- 282 (876)
T ss_pred ---c----cc------------cc-----c---------------------------------hhHH-HHHHHHHHHHh-
Confidence 0 00 00 0 0000 00111111111
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeE
Q 000916 559 SEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVV 638 (1225)
Q Consensus 559 ~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~ 638 (1225)
..+.+|||+++...++.++..|..... .......+..+||+|+.++|..+.+.+..|..+|||||+++|.||+|++|.
T Consensus 283 -~~~~~LVF~nTr~~ae~la~~L~~~~~-~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd 360 (876)
T PRK13767 283 -EHRTTLIFTNTRSGAERVLYNLRKRFP-EEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYID 360 (876)
T ss_pred -cCCCEEEEeCCHHHHHHHHHHHHHhch-hhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCc
Confidence 246899999999999999999875310 001235689999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCC----cceEEEEecCHHHH------hcCCCC--CCCccc
Q 000916 639 YVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRC----QAGICYHLYSQLRA------ASLPDF--QVPEIK 706 (1225)
Q Consensus 639 ~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~----~~G~CyrLys~~~~------~~m~~~--~~PEI~ 706 (1225)
+||..|. |.|.+++.||.|||||. ..|.+|-+...+-. +...+. ..+.+.
T Consensus 361 ~VI~~~~------------------P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~ 422 (876)
T PRK13767 361 LVVLLGS------------------PKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIP 422 (876)
T ss_pred EEEEeCC------------------CCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCC
Confidence 9997654 45789999999999985 24888875433211 111111 122334
Q ss_pred ccChhhHHHHHhhcCCC--CCh---hhhhhhcC--CCCcHHHHHHHHHHHHHcCC
Q 000916 707 RIPIEELCLQVKLLDPN--CNI---EDFLQKTL--DPPVSVTIRNAIIVLQDIGA 754 (1225)
Q Consensus 707 R~pL~~l~L~~K~l~~~--~~i---~~fL~~~l--dPP~~~av~~Al~~L~~lgA 754 (1225)
..|++-++-|+-.+... .++ .+++..+. .-=+.+.....+++|..-++
T Consensus 423 ~~~~dvl~q~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 477 (876)
T PRK13767 423 KNPLDVLAQHIVGMAIERPWDIEEAYNIVRRAYPYRDLSDEDFESVLRYLAGDYG 477 (876)
T ss_pred CCcHHHHHHHHHHHHHcCCCCHHHHHHHHhccCCcccCCHHHHHHHHHHHhccCc
Confidence 45666666666555321 122 23332211 01134677788888866543
No 33
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.95 E-value=1.8e-26 Score=287.17 Aligned_cols=299 Identities=18% Similarity=0.224 Sum_probs=204.0
Q ss_pred hHHHHHHHHHHHcCCeEEEEccCCCchhc--hHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEE
Q 000916 191 SSFKDVITSTVDSNQVVLISGETGCGKTT--QVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIG 268 (1225)
Q Consensus 191 ~~~r~eIl~aI~~~~VvII~GeTGsGKTT--QvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VG 268 (1225)
...|+++++++.+++.++|+++||||||. |+|..+. ...+++..|++..+.+..+++.. . |..++
T Consensus 27 r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------~g~tlVisPl~sL~~dqv~~l~~-~----gi~~~ 93 (607)
T PRK11057 27 RPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------DGLTLVVSPLISLMKDQVDQLLA-N----GVAAA 93 (607)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------CCCEEEEecHHHHHHHHHHHHHH-c----CCcEE
Confidence 36799999999999999999999999998 5565432 13578889999988887776642 2 33333
Q ss_pred EEEeec----------ccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccc-hhHH-
Q 000916 269 YKIRLE----------SKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRY-SDFM- 336 (1225)
Q Consensus 269 Y~IR~e----------s~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~-tD~L- 336 (1225)
+-.... .......+|+|+||+.|+.......+ ...++++|||||+|...-. -||-
T Consensus 94 ~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l-------------~~~~l~~iVIDEaH~i~~~G~~fr~ 160 (607)
T PRK11057 94 CLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHL-------------AHWNPALLAVDEAHCISQWGHDFRP 160 (607)
T ss_pred EEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHH-------------hhCCCCEEEEeCccccccccCcccH
Confidence 321110 11223468999999998753322211 3457899999999974422 1221
Q ss_pred -HHHHHHhCcCCCCceEEEEcccccHHHH---HhhhC-CCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCC
Q 000916 337 -LAIIRDMLPSYPHLRLILMSATLDADRF---SQYFG-GCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVP 411 (1225)
Q Consensus 337 -L~lLk~ll~~~~~LKlILMSATld~~~F---s~yF~-~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p 411 (1225)
+..|..+....|+.++|+||||++.... .+.++ ..|.+.+....-|.-.+.+
T Consensus 161 ~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v----------------------- 217 (607)
T PRK11057 161 EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTL----------------------- 217 (607)
T ss_pred HHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeee-----------------------
Confidence 1223333345688999999999965432 23222 2232222111100000000
Q ss_pred CCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhh
Q 000916 412 NEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLK 491 (1225)
Q Consensus 412 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~ 491 (1225)
T Consensus 218 -------------------------------------------------------------------------------- 217 (607)
T PRK11057 218 -------------------------------------------------------------------------------- 217 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCH
Q 000916 492 AKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGW 571 (1225)
Q Consensus 492 ~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~ 571 (1225)
... . ..+..++..+. ....+.+|||++++
T Consensus 218 ----------~~~-------------------------------------~---~~~~~l~~~l~-~~~~~~~IIFc~tr 246 (607)
T PRK11057 218 ----------VEK-------------------------------------F---KPLDQLMRYVQ-EQRGKSGIIYCNSR 246 (607)
T ss_pred ----------eec-------------------------------------c---chHHHHHHHHH-hcCCCCEEEEECcH
Confidence 000 0 00011222222 23457889999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccc
Q 000916 572 EDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSY 651 (1225)
Q Consensus 572 ~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~y 651 (1225)
++++.+++.|...+ +.+.++||+|+.++|.++++.+..|..+|||||+++++||+||||++||+.+.
T Consensus 247 ~~~e~la~~L~~~g-------~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~------ 313 (607)
T PRK11057 247 AKVEDTAARLQSRG-------ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI------ 313 (607)
T ss_pred HHHHHHHHHHHhCC-------CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCC------
Confidence 99999999998653 67899999999999999999999999999999999999999999999998776
Q ss_pred cCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHHH
Q 000916 652 DPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLRA 694 (1225)
Q Consensus 652 d~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~~ 694 (1225)
|-|..++.||+|||||.+ +|.|+.||+..++
T Consensus 314 ------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 314 ------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred ------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 457889999999999976 4999999998654
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=3.6e-26 Score=277.01 Aligned_cols=300 Identities=17% Similarity=0.200 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhc--hHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEE
Q 000916 192 SFKDVITSTVDSNQVVLISGETGCGKTT--QVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGY 269 (1225)
Q Consensus 192 ~~r~eIl~aI~~~~VvII~GeTGsGKTT--QvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY 269 (1225)
..|.+++.++.+++.++|+++||+|||. |+|..+ . ....++..|+|..+.+..+++.. .|..+.+
T Consensus 14 ~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~--~------~~~~lVi~P~~~L~~dq~~~l~~-----~gi~~~~ 80 (470)
T TIGR00614 14 PVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC--S------DGITLVISPLISLMEDQVLQLKA-----SGIPATF 80 (470)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH--c------CCcEEEEecHHHHHHHHHHHHHH-----cCCcEEE
Confidence 5688999999999999999999999998 455432 1 23577888999998888777642 2333332
Q ss_pred EEeecc----------cCCCCccEEEEccHHHHHHH--HhcCcccccccCCCccccccCCccEEEeccccccccc-hhHH
Q 000916 270 KIRLES----------KGGKHSSIVFCTNGVLLRLL--VSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRY-SDFM 336 (1225)
Q Consensus 270 ~IR~es----------~~s~~t~I~f~T~GvLLr~L--~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~-tD~L 336 (1225)
-..... ......+|+|+||+.|.... ... + ..+.++++|||||+|.-.-. .||-
T Consensus 81 l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~------------l-~~~~~i~~iViDEaH~i~~~g~~fr 147 (470)
T TIGR00614 81 LNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQT------------L-EERKGITLIAVDEAHCISQWGHDFR 147 (470)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHH------------H-HhcCCcCEEEEeCCcccCccccccH
Confidence 211110 11234689999999976432 111 0 13578999999999963211 1221
Q ss_pred H--HHHHHhCcCCCCceEEEEcccccHHH---HHhhhC-CCCeEecCCcccceeEEEehhhHHhhhhccccccccccccC
Q 000916 337 L--AIIRDMLPSYPHLRLILMSATLDADR---FSQYFG-GCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIV 410 (1225)
Q Consensus 337 L--~lLk~ll~~~~~LKlILMSATld~~~---Fs~yF~-~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~ 410 (1225)
- ..|..+....|+.++++||||+.... +.+.++ ..|.+...+...|--.+.+.
T Consensus 148 ~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~--------------------- 206 (470)
T TIGR00614 148 PDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVR--------------------- 206 (470)
T ss_pred HHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEE---------------------
Confidence 1 11222333457889999999996543 333333 11211111100000000000
Q ss_pred CCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchh
Q 000916 411 PNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQL 490 (1225)
Q Consensus 411 p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~ 490 (1225)
T Consensus 207 -------------------------------------------------------------------------------- 206 (470)
T TIGR00614 207 -------------------------------------------------------------------------------- 206 (470)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCC
Q 000916 491 KAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPG 570 (1225)
Q Consensus 491 ~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG 570 (1225)
... ...+.+++..+.........|||+++
T Consensus 207 ------------~~~---------------------------------------~~~~~~l~~~l~~~~~~~~~IIF~~s 235 (470)
T TIGR00614 207 ------------RKT---------------------------------------PKILEDLLRFIRKEFKGKSGIIYCPS 235 (470)
T ss_pred ------------eCC---------------------------------------ccHHHHHHHHHHHhcCCCceEEEECc
Confidence 000 00111222233222334456999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCccccc
Q 000916 571 WEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKS 650 (1225)
Q Consensus 571 ~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~ 650 (1225)
.++++.+.+.|...+ +.+..+||+|+.++|.++++.+..|..+|||||+++++||++|+|++||+.+.
T Consensus 236 ~~~~e~la~~L~~~g-------~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~----- 303 (470)
T TIGR00614 236 RKKSEQVTASLQNLG-------IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL----- 303 (470)
T ss_pred HHHHHHHHHHHHhcC-------CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC-----
Confidence 999999999997653 67889999999999999999999999999999999999999999999998776
Q ss_pred ccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHHH
Q 000916 651 YDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLRA 694 (1225)
Q Consensus 651 yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~~ 694 (1225)
+-|..+|.||.|||||.+ +|.|+.+|+..+.
T Consensus 304 -------------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 304 -------------PKSMESYYQESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred -------------CCCHHHHHhhhcCcCCCCCCceEEEEechhHH
Confidence 446788999999999976 5999999998654
No 35
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=255.38 Aligned_cols=336 Identities=21% Similarity=0.242 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc---cCC--ccEEEEecchHHHHHHHHHHHHHHhCCccCC-
Q 000916 192 SFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS---KGE--TCKIVCTQPRRISATSVAERISVERGENIGD- 265 (1225)
Q Consensus 192 ~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~---~~~--~~~IicTQPRRiaAisvAeRVa~Erge~lG~- 265 (1225)
..|...+..+.+|+.|+|-+.||||||.++..+++|-.+. +.. ..-.++.-|+|..|.++.+ |+..+-+.+-.
T Consensus 31 pVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~-V~~~F~~~l~~l 109 (567)
T KOG0345|consen 31 PVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIRE-VAQPFLEHLPNL 109 (567)
T ss_pred HHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHH-HHHHHHHhhhcc
Confidence 3467788899999999999999999999999999998853 222 2456788999999999987 77766554211
Q ss_pred ----eEEEE-Eeec--ccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHH
Q 000916 266 ----NIGYK-IRLE--SKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLA 338 (1225)
Q Consensus 266 ----~VGY~-IR~e--s~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~ 338 (1225)
-||-+ |.-+ .-...+..|++||||.|+.+++.... . -....++++|+|||+ |-+++.|--.
T Consensus 110 ~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~---------~--l~~rsLe~LVLDEAD-rLldmgFe~~ 177 (567)
T KOG0345|consen 110 NCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE---------K--LSFRSLEILVLDEAD-RLLDMGFEAS 177 (567)
T ss_pred ceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh---------h--ccccccceEEecchH-hHhcccHHHH
Confidence 12221 1100 01124567999999999999987421 0 134599999999999 7787777443
Q ss_pred HHHHhCcCCCCceEEEEccccc--HHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcc
Q 000916 339 IIRDMLPSYPHLRLILMSATLD--ADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPE 416 (1225)
Q Consensus 339 lLk~ll~~~~~LKlILMSATld--~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~ 416 (1225)
+-..+-...+.-|.=|+|||.+ .+.+...+ -..||.+.--+.- .+
T Consensus 178 ~n~ILs~LPKQRRTGLFSATq~~~v~dL~raG----------LRNpv~V~V~~k~------------~~----------- 224 (567)
T KOG0345|consen 178 VNTILSFLPKQRRTGLFSATQTQEVEDLARAG----------LRNPVRVSVKEKS------------KS----------- 224 (567)
T ss_pred HHHHHHhcccccccccccchhhHHHHHHHHhh----------ccCceeeeecccc------------cc-----------
Confidence 3222222233568889999993 44444432 2234433211000 00
Q ss_pred hhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccc
Q 000916 417 LTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGR 496 (1225)
Q Consensus 417 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~ 496 (1225)
.|| +
T Consensus 225 ----------------------------------------------~tP----S-------------------------- 228 (567)
T KOG0345|consen 225 ----------------------------------------------ATP----S-------------------------- 228 (567)
T ss_pred ----------------------------------------------cCc----h--------------------------
Confidence 000 0
Q ss_pred hhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHH
Q 000916 497 TALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINK 576 (1225)
Q Consensus 497 ~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~ 576 (1225)
.+-..|+. +.++ +.... +.++..+...+.++||+|+...++.
T Consensus 229 --------------------------------~L~~~Y~v-~~a~----eK~~~-lv~~L~~~~~kK~iVFF~TCasVeY 270 (567)
T KOG0345|consen 229 --------------------------------SLALEYLV-CEAD----EKLSQ-LVHLLNNNKDKKCIVFFPTCASVEY 270 (567)
T ss_pred --------------------------------hhcceeeE-ecHH----HHHHH-HHHHHhccccccEEEEecCcchHHH
Confidence 00000100 0000 00111 2233334567899999999999998
Q ss_pred HHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCC
Q 000916 577 TRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNN 656 (1225)
Q Consensus 577 l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~ 656 (1225)
....+... .....|+.+||.|.+..|.++|+.+.+-..-+++||+||.+||+||||.|||. |||...
T Consensus 271 f~~~~~~~-----l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ--------~DpP~~ 337 (567)
T KOG0345|consen 271 FGKLFSRL-----LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ--------FDPPKD 337 (567)
T ss_pred HHHHHHHH-----hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe--------cCCCCC
Confidence 88777542 23478999999999999999999998888889999999999999999999995 666554
Q ss_pred cccccccccCHhhHHhhcCccCCCcc-eEEEEec--CHHHHhc-CCCCCCCcccccCh
Q 000916 657 VSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLY--SQLRAAS-LPDFQVPEIKRIPI 710 (1225)
Q Consensus 657 ~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLy--s~~~~~~-m~~~~~PEI~R~pL 710 (1225)
. +++.||+||+||.+. |..+-+. .+..|-. |.-...||+-|...
T Consensus 338 ~----------~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 338 P----------SSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDT 385 (567)
T ss_pred h----------hHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcc
Confidence 3 456799998888765 6655544 3455554 33344566555443
No 36
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.94 E-value=7.6e-26 Score=264.86 Aligned_cols=306 Identities=20% Similarity=0.227 Sum_probs=193.7
Q ss_pred eEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEE------EEEe-----ec
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIG------YKIR-----LE 274 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VG------Y~IR-----~e 274 (1225)
+|+|+|+||||||+...+++++... ++...+|+++.|+|.+|.++++++..-++..+|...| +... ++
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~-~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIK-SQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHh-hCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHH
Confidence 4789999999999999999998753 3345689999999999999999998876654432111 0000 00
Q ss_pred c------c---CCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccc-hhHHHHHHHHhC
Q 000916 275 S------K---GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRY-SDFMLAIIRDML 344 (1225)
Q Consensus 275 s------~---~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~-tD~LL~lLk~ll 344 (1225)
. . .-....|++||++.++..+..... +.......-..++|||||+|...-. .++++.+++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~-------~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~ 152 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFG-------HYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK 152 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccc-------hHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0 0 012357999999999988875210 0000011123489999999975432 345555555443
Q ss_pred cCCCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhhhhh
Q 000916 345 PSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKST 424 (1225)
Q Consensus 345 ~~~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 424 (1225)
..+.++|+||||+. +.+.+|+........+ ..++..... .
T Consensus 153 --~~~~~~i~~SATlp-~~l~~~~~~~~~~~~~-~~~~~~~~~--~---------------------------------- 192 (358)
T TIGR01587 153 --DNDVPILLMSATLP-KFLKEYAEKIGYVEFN-EPLDLKEER--R---------------------------------- 192 (358)
T ss_pred --HcCCCEEEEecCch-HHHHHHHhcCCCcccc-cCCCCcccc--c----------------------------------
Confidence 35789999999996 5566666532111000 001100000 0
Q ss_pred hHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccc
Q 000916 425 LDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQ 504 (1225)
Q Consensus 425 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~ 504 (1225)
+. ...+. ..
T Consensus 193 ----~~----------------------~~~~~----------~~----------------------------------- 201 (358)
T TIGR01587 193 ----FE----------------------RHRFI----------KI----------------------------------- 201 (358)
T ss_pred ----cc----------------------cccce----------ee-----------------------------------
Confidence 00 00000 00
Q ss_pred cCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcC
Q 000916 505 ENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLAN 584 (1225)
Q Consensus 505 ~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~ 584 (1225)
......+...+.+++..+ ..++.+|||+++.++++.+.+.|.+.
T Consensus 202 ---------------------------------~~~~~~~~~~l~~l~~~~---~~~~~~lVf~~t~~~~~~~~~~L~~~ 245 (358)
T TIGR01587 202 ---------------------------------ESDKVGEISSLERLLEFI---KKGGKIAIIVNTVDRAQEFYQQLKEN 245 (358)
T ss_pred ---------------------------------ccccccCHHHHHHHHHHh---hCCCeEEEEECCHHHHHHHHHHHHhh
Confidence 000000011122222211 24689999999999999999999764
Q ss_pred CCCCCCCceEEEEecCCCCHHHHHH----HhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccc
Q 000916 585 PFFRDTSKFVIIPLHSMVPSVQQKK----VFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTL 660 (1225)
Q Consensus 585 ~~~~~~~~~~vl~LHs~l~~~eQ~~----vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L 660 (1225)
.. ...+..+||.|+..+|.+ +++.+..|..+|+|||+++|+||||+ +.+||..
T Consensus 246 ~~-----~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~----------------- 302 (358)
T TIGR01587 246 AP-----EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITE----------------- 302 (358)
T ss_pred cC-----CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEc-----------------
Confidence 31 246999999999999866 48888899999999999999999995 6777742
Q ss_pred cccccCHhhHHhhcCccCCCcc-----eEEEEecCHH
Q 000916 661 QSSWVSKASAKQRAGRAGRCQA-----GICYHLYSQL 692 (1225)
Q Consensus 661 ~~~wiSkasa~QR~GRAGR~~~-----G~CyrLys~~ 692 (1225)
+.+-+++.||.||+||.+. |..|-++...
T Consensus 303 ---~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 303 ---LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred ---CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 2345689999999999653 3677777543
No 37
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.94 E-value=2.1e-25 Score=254.90 Aligned_cols=320 Identities=18% Similarity=0.174 Sum_probs=224.4
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc----cCCccEEEEecchHHHHHHHHHHHHHHhCCcc-C
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS----KGETCKIVCTQPRRISATSVAERISVERGENI-G 264 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~----~~~~~~IicTQPRRiaAisvAeRVa~Erge~l-G 264 (1225)
....|+..+.-|..++.|++.+.||+|||.++-.+..|..+. ......+++..|||+.|++++. +|+|+-.-. +
T Consensus 105 MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~-eak~Ll~~h~~ 183 (543)
T KOG0342|consen 105 MTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFA-EAKELLKYHES 183 (543)
T ss_pred hhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHH-HHHHHHhhCCC
Confidence 334566667777888999999999999999988888888763 2345678899999999999998 666654444 7
Q ss_pred CeEEEEEeecccC------CCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHH
Q 000916 265 DNIGYKIRLESKG------GKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLA 338 (1225)
Q Consensus 265 ~~VGY~IR~es~~------s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~ 338 (1225)
.+||+-|...+.. .....|+++|||.|+.+|++.+. ....+..++|||||+ |-++..|=-.
T Consensus 184 ~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~------------f~~r~~k~lvlDEAD-rlLd~GF~~d 250 (543)
T KOG0342|consen 184 ITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG------------FLFRNLKCLVLDEAD-RLLDIGFEED 250 (543)
T ss_pred cceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc------------chhhccceeEeecch-hhhhcccHHH
Confidence 8899999776643 34789999999999999998742 356677899999998 7777777555
Q ss_pred HHHHhCcCCCCceEEEEcccccH--HHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcc
Q 000916 339 IIRDMLPSYPHLRLILMSATLDA--DRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPE 416 (1225)
Q Consensus 339 lLk~ll~~~~~LKlILMSATld~--~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~ 416 (1225)
+.+.+-......+-.|+|||+.. +..++---. + -|+ |+.-+ +. .
T Consensus 251 i~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~--------~-d~~---~v~~~------------d~-------~--- 296 (543)
T KOG0342|consen 251 VEQIIKILPKQRQTLLFSATQPSKVKDLARGALK--------R-DPV---FVNVD------------DG-------G--- 296 (543)
T ss_pred HHHHHHhccccceeeEeeCCCcHHHHHHHHHhhc--------C-Cce---EeecC------------CC-------C---
Confidence 55544333456799999999953 333331100 0 111 11100 00 0
Q ss_pred hhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccc
Q 000916 417 LTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGR 496 (1225)
Q Consensus 417 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~ 496 (1225)
..... + +. +
T Consensus 297 ----~~~Th-e----------------------------------~l------------~-------------------- 305 (543)
T KOG0342|consen 297 ----ERETH-E----------------------------------RL------------E-------------------- 305 (543)
T ss_pred ----Ccchh-h----------------------------------cc------------c--------------------
Confidence 00000 0 00 0
Q ss_pred hhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHH
Q 000916 497 TALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINK 576 (1225)
Q Consensus 497 ~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~ 576 (1225)
+.|+....... +-++..+|.. ....-.|+||+|+..-+.-
T Consensus 306 -----------------------------------Qgyvv~~~~~~--f~ll~~~LKk---~~~~~KiiVF~sT~~~vk~ 345 (543)
T KOG0342|consen 306 -----------------------------------QGYVVAPSDSR--FSLLYTFLKK---NIKRYKIIVFFSTCMSVKF 345 (543)
T ss_pred -----------------------------------ceEEeccccch--HHHHHHHHHH---hcCCceEEEEechhhHHHH
Confidence 00000000000 1122222221 1123689999999999999
Q ss_pred HHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCC
Q 000916 577 TRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNN 656 (1225)
Q Consensus 577 l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~ 656 (1225)
+++.|... .+.|+-+||.+++..|..+|..|.+...-|+||||+|.+|++||+|..||..|.
T Consensus 346 ~~~lL~~~-------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~----------- 407 (543)
T KOG0342|consen 346 HAELLNYI-------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDP----------- 407 (543)
T ss_pred HHHHHhhc-------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCC-----------
Confidence 99988643 378999999999999999999999999999999999999999999999997665
Q ss_pred cccccccccCHhhHHhhcCccCCCcc-eEEEEecCHHH
Q 000916 657 VSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLR 693 (1225)
Q Consensus 657 ~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~ 693 (1225)
|-...+|.||.||+||.+. |..+-+..+++
T Consensus 408 -------P~d~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 408 -------PSDPEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred -------CCCHHHHHHHhccccccCCCceEEEEeChhH
Confidence 4456789999999999776 99998887754
No 38
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=2.6e-24 Score=267.76 Aligned_cols=349 Identities=18% Similarity=0.212 Sum_probs=207.3
Q ss_pred ChHHHHHHHHHHHcCC-eEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccC----
Q 000916 190 ISSFKDVITSTVDSNQ-VVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIG---- 264 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~-VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG---- 264 (1225)
-+.+|.+++..+.+++ ++++.++||||||..+-.|++-........-+++++.|||..|.++++.+ ..++..+.
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~-~~~~k~l~~~~~ 94 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEA-EKIGERLPDVPE 94 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHH-HHHHHHhcccch
Confidence 6788999999998887 68888999999998766666622112223346777999999999999855 33444331
Q ss_pred -------------------CeEEEEEeeccc------CCCCccEEEEccHHHHHHHHhcCcccccccCCCccc-cccCCc
Q 000916 265 -------------------DNIGYKIRLESK------GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAK-DDVSAL 318 (1225)
Q Consensus 265 -------------------~~VGY~IR~es~------~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~-~~L~~~ 318 (1225)
-.|..-+...+. ......|+++|...+.+.+...+... ....+++. ..|+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~--~~~~~pi~ag~L~~v 172 (844)
T TIGR02621 95 VEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGC--GFKSRPLHAGFLGQD 172 (844)
T ss_pred hhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCcccccccc--ccccccchhhhhccc
Confidence 122221222111 23456899999655544433110000 00000000 147899
Q ss_pred cEEEeccccccccchhHHHHHHHHhCc--CCCCceEEEEcccccH--HHHHhhhCCCCeEecCCcccceeEEEehhhHHh
Q 000916 319 THIIVDEIHERDRYSDFMLAIIRDMLP--SYPHLRLILMSATLDA--DRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSI 394 (1225)
Q Consensus 319 shVIvDEvHER~~~tD~LL~lLk~ll~--~~~~LKlILMSATld~--~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~ 394 (1225)
++|||||||....+.+.+..+++.+.. ...++++++||||+.. ..+...|...|. .++|....+..
T Consensus 173 ~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~------~i~V~~~~l~a---- 242 (844)
T TIGR02621 173 ALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDY------KHPVLKKRLAA---- 242 (844)
T ss_pred eEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCc------eeecccccccc----
Confidence 999999999777777777777776421 1224799999999954 334443432221 11111100000
Q ss_pred hhhccccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCc
Q 000916 395 LKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGR 474 (1225)
Q Consensus 395 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~ 474 (1225)
..+..|.
T Consensus 243 --------------------------------------------------------~ki~q~v----------------- 249 (844)
T TIGR02621 243 --------------------------------------------------------KKIVKLV----------------- 249 (844)
T ss_pred --------------------------------------------------------cceEEEE-----------------
Confidence 0000000
Q ss_pred cchhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHH
Q 000916 475 VGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRK 554 (1225)
Q Consensus 475 ~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~ 554 (1225)
.... . ..++ .++..+. .
T Consensus 250 ----------------------------~v~~-e--------------------------------~Kl~-~lv~~L~-~ 266 (844)
T TIGR02621 250 ----------------------------PPSD-E--------------------------------KFLS-TMVKELN-L 266 (844)
T ss_pred ----------------------------ecCh-H--------------------------------HHHH-HHHHHHH-H
Confidence 0000 0 0000 0111111 1
Q ss_pred HHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHH-----HHhcCCCC----CC-------
Q 000916 555 ICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQK-----KVFKRPPP----GC------- 618 (1225)
Q Consensus 555 I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~-----~vF~~~p~----g~------- 618 (1225)
+. ....+.+|||+++.+++..+++.|.... + ..|||.|++.+|. ++++.+.+ |.
T Consensus 267 ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g-------~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g 336 (844)
T TIGR02621 267 LM-KDSGGAILVFCRTVKHVRKVFAKLPKEK-------F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQG 336 (844)
T ss_pred HH-hhCCCcEEEEECCHHHHHHHHHHHHhcC-------C--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccccccc
Confidence 11 1346889999999999999999997642 2 7899999999999 67766654 33
Q ss_pred ceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-e----EEEEe-cCHH
Q 000916 619 RKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-G----ICYHL-YSQL 692 (1225)
Q Consensus 619 rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G----~CyrL-ys~~ 692 (1225)
.+|+|||+++|+||+|+. .+||..- ....++.||.||+||.+. | .++.+ |.+.
T Consensus 337 ~~ILVATdVaerGLDId~-d~VI~d~--------------------aP~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~ 395 (844)
T TIGR02621 337 TVYLVCTSAGEVGVNISA-DHLVCDL--------------------APFESMQQRFGRVNRFGELQACQIAVVHLDLGKD 395 (844)
T ss_pred ceEEeccchhhhcccCCc-ceEEECC--------------------CCHHHHHHHhcccCCCCCCCCceEEEEeeccCCC
Confidence 689999999999999987 6666311 123789999999999765 2 33333 2222
Q ss_pred HHhcCCCCCCCcccccChhhHHHHHhhcC
Q 000916 693 RAASLPDFQVPEIKRIPIEELCLQVKLLD 721 (1225)
Q Consensus 693 ~~~~m~~~~~PEI~R~pL~~l~L~~K~l~ 721 (1225)
.. ....-||+++..+..+.+..+..+
T Consensus 396 ~~---~~vY~~~~l~~t~~~L~~~~~~~~ 421 (844)
T TIGR02621 396 QD---FDVYGKKIDKSTWSTLKKLQQLKG 421 (844)
T ss_pred cc---cCCCCHHHHHHHHHHHHHHHhccc
Confidence 11 112246888877777777666554
No 39
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.93 E-value=6.4e-25 Score=251.23 Aligned_cols=321 Identities=22% Similarity=0.243 Sum_probs=228.3
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc---------cCCccEEEEecchHHHHH
Q 000916 179 RQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS---------KGETCKIVCTQPRRISAT 249 (1225)
Q Consensus 179 ~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~---------~~~~~~IicTQPRRiaAi 249 (1225)
+-+.+-+-.+|---+|..| .....++.+|..++||||||..+|.+|+..+.. .-.+...++..|+|..|-
T Consensus 258 ~~I~~~~y~eptpIqR~ai-pl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaq 336 (673)
T KOG0333|consen 258 SVIKKPGYKEPTPIQRQAI-PLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQ 336 (673)
T ss_pred HHHHhcCCCCCchHHHhhc-cchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHH
Confidence 3344455567765555544 466788888889999999999999999876532 123457889999999887
Q ss_pred HHHHHHHHHhCCccCCe----EEEEEeecc---cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEE
Q 000916 250 SVAERISVERGENIGDN----IGYKIRLES---KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHII 322 (1225)
Q Consensus 250 svAeRVa~Erge~lG~~----VGY~IR~es---~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVI 322 (1225)
++-+- +..+++.+|.. ||- .++|. +.+..+.|+++|||.|+..|.+.- -.|+..++||
T Consensus 337 qIeeE-t~kf~~~lg~r~vsvigg-~s~EEq~fqls~gceiviatPgrLid~Lenr~-------------lvl~qctyvv 401 (673)
T KOG0333|consen 337 QIEEE-TNKFGKPLGIRTVSVIGG-LSFEEQGFQLSMGCEIVIATPGRLIDSLENRY-------------LVLNQCTYVV 401 (673)
T ss_pred HHHHH-HHHhcccccceEEEEecc-cchhhhhhhhhccceeeecCchHHHHHHHHHH-------------HHhccCceEe
Confidence 77653 23345555532 332 33443 457789999999999999998763 3789999999
Q ss_pred eccccccccchhHHHHHHHHhCcC---C----------------------CCceEEEEcccc--cHHHHH-hhhCCCCeE
Q 000916 323 VDEIHERDRYSDFMLAIIRDMLPS---Y----------------------PHLRLILMSATL--DADRFS-QYFGGCPVI 374 (1225)
Q Consensus 323 vDEvHER~~~tD~LL~lLk~ll~~---~----------------------~~LKlILMSATl--d~~~Fs-~yF~~~pvi 374 (1225)
+|||+ |.+++.|--.+.+.+-.. + .-.+.+.+|||| -++.++ .||..+-++
T Consensus 402 ldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~v 480 (673)
T KOG0333|consen 402 LDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVV 480 (673)
T ss_pred ccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEE
Confidence 99999 778887765555544221 0 015678999999 355555 488765555
Q ss_pred ecC--CcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCC
Q 000916 375 QVP--GFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPN 452 (1225)
Q Consensus 375 ~I~--gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 452 (1225)
+|. |++.|.-....+
T Consensus 481 tig~~gk~~~rveQ~v~--------------------------------------------------------------- 497 (673)
T KOG0333|consen 481 TIGSAGKPTPRVEQKVE--------------------------------------------------------------- 497 (673)
T ss_pred EeccCCCCccchheEEE---------------------------------------------------------------
Confidence 443 232221100000
Q ss_pred cccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHH
Q 000916 453 VYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLD 532 (1225)
Q Consensus 453 ~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~ 532 (1225)
|+ +.
T Consensus 498 --------------m~-----------------------~e--------------------------------------- 501 (673)
T KOG0333|consen 498 --------------MV-----------------------SE--------------------------------------- 501 (673)
T ss_pred --------------Ee-----------------------cc---------------------------------------
Confidence 00 00
Q ss_pred hhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhc
Q 000916 533 KYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFK 612 (1225)
Q Consensus 533 ~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~ 612 (1225)
+ +. ...+. .|..+....+|+||++....++.+++.|...+ |.+..|||+-+++++..++.
T Consensus 502 ------d-~k--~kkL~----eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g-------~~~~tlHg~k~qeQRe~aL~ 561 (673)
T KOG0333|consen 502 ------D-EK--RKKLI----EILESNFDPPIIIFVNTKKGADALAKILEKAG-------YKVTTLHGGKSQEQRENALA 561 (673)
T ss_pred ------h-HH--HHHHH----HHHHhCCCCCEEEEEechhhHHHHHHHHhhcc-------ceEEEeeCCccHHHHHHHHH
Confidence 0 00 00011 12222345789999999999999999998754 89999999999999999999
Q ss_pred CCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCH
Q 000916 613 RPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQ 691 (1225)
Q Consensus 613 ~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~ 691 (1225)
.++.|.--|+||||+|.+||+||||.+||++.+.| |-..|.||.||+||.+. |....+||.
T Consensus 562 ~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmak------------------sieDYtHRIGRTgRAGk~GtaiSflt~ 623 (673)
T KOG0333|consen 562 DFREGTGDILVATDVAGRGIDIPNVSLVINYDMAK------------------SIEDYTHRIGRTGRAGKSGTAISFLTP 623 (673)
T ss_pred HHHhcCCCEEEEecccccCCCCCccceeeecchhh------------------hHHHHHHHhccccccccCceeEEEecc
Confidence 99999999999999999999999999999977744 44578899999999887 999999998
Q ss_pred HH
Q 000916 692 LR 693 (1225)
Q Consensus 692 ~~ 693 (1225)
..
T Consensus 624 ~d 625 (673)
T KOG0333|consen 624 AD 625 (673)
T ss_pred ch
Confidence 65
No 40
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.92 E-value=3.8e-24 Score=269.35 Aligned_cols=109 Identities=25% Similarity=0.188 Sum_probs=98.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEE
Q 000916 561 DGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYV 640 (1225)
Q Consensus 561 ~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~V 640 (1225)
++..|||+.+..+++.+.+.|...+ +.+.++||+|+.++|..+++.+..|..+|||||++++.||++|||+||
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~G-------ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~V 752 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFG-------HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV 752 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCC-------CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEE
Confidence 4667999999999999999998654 678999999999999999999999999999999999999999999999
Q ss_pred EeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHHH
Q 000916 641 IDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLRA 694 (1225)
Q Consensus 641 IDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~~ 694 (1225)
|++++ |-|-.+|.||.|||||-+ +|.|+-||+..++
T Consensus 753 IHydl------------------PkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 753 IHHSL------------------PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred EEcCC------------------CCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 99887 446678999999999976 5999999997655
No 41
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.92 E-value=4.5e-24 Score=278.87 Aligned_cols=310 Identities=21% Similarity=0.284 Sum_probs=201.8
Q ss_pred EEccCCCchhchHHHHHHHHHhcc----------CCccEEEEecchHHHHHHHHHHHHH----------HhC-CccCCeE
Q 000916 209 ISGETGCGKTTQVPQFLLEHIWSK----------GETCKIVCTQPRRISATSVAERISV----------ERG-ENIGDNI 267 (1225)
Q Consensus 209 I~GeTGsGKTTQvPq~ILe~~~~~----------~~~~~IicTQPRRiaAisvAeRVa~----------Erg-e~lG~~V 267 (1225)
|+++||||||...-.++++.++.. ...+++++.-|.|..|.++.+++.. .+| ..+|-+|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999899887642 2358999999999999999987642 112 1234455
Q ss_pred EEEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccccc-----ccchhHH
Q 000916 268 GYKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHER-----DRYSDFM 336 (1225)
Q Consensus 268 GY~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER-----~~~tD~L 336 (1225)
|--....+ ......+|+++||+.|...|.+.. ...|+++.+|||||+|+- +...-.+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~------------r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~ 148 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA------------RETLRGVETVIIDEVHAVAGSKRGAHLALS 148 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhh------------hhhhccCCEEEEecHHHhcccccccHHHHH
Confidence 53221111 112356899999999988776531 137999999999999963 3223334
Q ss_pred HHHHHHhCcCCCCceEEEEcccc-cHHHHHhhhCCC-Ce--EecC-CcccceeEEEe-hhhHHhhhhccccccccccccC
Q 000916 337 LAIIRDMLPSYPHLRLILMSATL-DADRFSQYFGGC-PV--IQVP-GFTYPVKSFYL-EDVLSILKSAESNHLDSASLIV 410 (1225)
Q Consensus 337 L~lLk~ll~~~~~LKlILMSATl-d~~~Fs~yF~~~-pv--i~I~-gr~~pV~~~yL-edil~~~~~~~~~~~~~~~~~~ 410 (1225)
|.-|+.++. .++++|.+|||+ |.+.+++|+++. |+ +..+ .+..+++.++- ++. .. +
T Consensus 149 LeRL~~l~~--~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~---~~------~------- 210 (1490)
T PRK09751 149 LERLDALLH--TSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANM---DD------V------- 210 (1490)
T ss_pred HHHHHHhCC--CCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCch---hh------c-------
Confidence 445555543 468999999999 889999999753 33 2211 12233332210 000 00 0
Q ss_pred CCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchh
Q 000916 411 PNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQL 490 (1225)
Q Consensus 411 p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~ 490 (1225)
+ +.. ...+ . ..
T Consensus 211 ~---------------------~~~-----------------------~~~~-----------~------------~~-- 221 (1490)
T PRK09751 211 S---------------------SVA-----------------------SGTG-----------E------------DS-- 221 (1490)
T ss_pred c---------------------ccc-----------------------cccc-----------c------------cc--
Confidence 0 000 0000 0 00
Q ss_pred hccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCC
Q 000916 491 KAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPG 570 (1225)
Q Consensus 491 ~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG 570 (1225)
. .. ....+..+ ....++..|. ..+.+|||+++
T Consensus 222 -----~-----~~------r~~~i~~~-----------------------------v~~~il~~i~---~~~stLVFvNS 253 (1490)
T PRK09751 222 -----H-----AG------REGSIWPY-----------------------------IETGILDEVL---RHRSTIVFTNS 253 (1490)
T ss_pred -----c-----hh------hhhhhhHH-----------------------------HHHHHHHHHh---cCCCEEEECCC
Confidence 0 00 00000000 0011222222 34789999999
Q ss_pred HHHHHHHHHHHHcCCC--C----------------C--------CCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEe
Q 000916 571 WEDINKTRDRLLANPF--F----------------R--------DTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILS 624 (1225)
Q Consensus 571 ~~eI~~l~~~L~~~~~--~----------------~--------~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILA 624 (1225)
+..++.+...|.+... . . ....+.+..+||+|+.++|..|.+.+..|..|||||
T Consensus 254 R~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVA 333 (1490)
T PRK09751 254 RGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVA 333 (1490)
T ss_pred HHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEe
Confidence 9999999988864210 0 0 001245788999999999999999999999999999
Q ss_pred cchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcce
Q 000916 625 TNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAG 683 (1225)
Q Consensus 625 TNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G 683 (1225)
|+.+|.||+|++|.+||+.|. |.|.+++.||.|||||...|
T Consensus 334 TssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR~~gg 374 (1490)
T PRK09751 334 TSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGHQVGG 374 (1490)
T ss_pred CcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCCCCCC
Confidence 999999999999999998664 77899999999999996433
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=5.2e-24 Score=265.13 Aligned_cols=109 Identities=19% Similarity=0.182 Sum_probs=97.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEE
Q 000916 561 DGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYV 640 (1225)
Q Consensus 561 ~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~V 640 (1225)
.+..|||+++..+++.+.+.|...+ +.+.++||+|+.++|..+++.+..|..+|||||++++.||++|||+||
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g-------~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V 296 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQG-------ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV 296 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCC-------CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE
Confidence 5678999999999999999997643 568899999999999999999999999999999999999999999999
Q ss_pred EeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHHH
Q 000916 641 IDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLRA 694 (1225)
Q Consensus 641 IDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~~ 694 (1225)
|+++. |-|..++.||+|||||-+ +|.|+.+|+..++
T Consensus 297 I~~~~------------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 297 IHYDM------------------PGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred EEcCC------------------CCCHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 98776 456778999999999976 6999999998654
No 43
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.92 E-value=8.5e-24 Score=266.01 Aligned_cols=305 Identities=19% Similarity=0.258 Sum_probs=204.7
Q ss_pred HHhhcCCC--ChHHHHHHHHHHHcC------CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHH
Q 000916 182 VEERSKLP--ISSFKDVITSTVDSN------QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAE 253 (1225)
Q Consensus 182 ~~~R~~LP--i~~~r~eIl~aI~~~------~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAe 253 (1225)
.++...|| ....|++.+..|.++ ..++++|+||||||......++.... .++++++..|+|+.|.++++
T Consensus 252 ~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA~Q~~~ 328 (681)
T PRK10917 252 KKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILAEQHYE 328 (681)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHHHHHHH
Confidence 44556666 578888888888775 36899999999999988777776653 24689999999999999999
Q ss_pred HHHHHhCCccCCeEEEEEeeccc----------CCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEe
Q 000916 254 RISVERGENIGDNIGYKIRLESK----------GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIV 323 (1225)
Q Consensus 254 RVa~Erge~lG~~VGY~IR~es~----------~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIv 323 (1225)
++..- ...+|-.|+.-....+. .+....|+++|++.+... ..+.++++|||
T Consensus 329 ~l~~l-~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~------------------v~~~~l~lvVI 389 (681)
T PRK10917 329 NLKKL-LEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD------------------VEFHNLGLVII 389 (681)
T ss_pred HHHHH-HhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc------------------chhcccceEEE
Confidence 88643 34556667665543321 122578999999876321 15789999999
Q ss_pred ccccccccchhHHHHHHHHhCcCCCCceEEEEcccccHHHHH-hhhCCCCeEec---CCcccceeEEEehhhHHhhhhcc
Q 000916 324 DEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLDADRFS-QYFGGCPVIQV---PGFTYPVKSFYLEDVLSILKSAE 399 (1225)
Q Consensus 324 DEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATld~~~Fs-~yF~~~pvi~I---~gr~~pV~~~yLedil~~~~~~~ 399 (1225)
||+|.-+... ...|+. .....++++||||.....+. .+|+...+..+ |....|++.++..+
T Consensus 390 DE~Hrfg~~q---r~~l~~---~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~--------- 454 (681)
T PRK10917 390 DEQHRFGVEQ---RLALRE---KGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPD--------- 454 (681)
T ss_pred echhhhhHHH---HHHHHh---cCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCc---------
Confidence 9999632221 112222 23356799999998655443 23443222221 11112232222110
Q ss_pred ccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhh
Q 000916 400 SNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVC 479 (1225)
Q Consensus 400 ~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~ 479 (1225)
T Consensus 455 -------------------------------------------------------------------------------- 454 (681)
T PRK10917 455 -------------------------------------------------------------------------------- 454 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcC
Q 000916 480 MLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDS 559 (1225)
Q Consensus 480 ~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~ 559 (1225)
..... ++..+...+ .
T Consensus 455 -------------------------~~~~~-------------------------------------~~~~i~~~~---~ 469 (681)
T PRK10917 455 -------------------------SRRDE-------------------------------------VYERIREEI---A 469 (681)
T ss_pred -------------------------ccHHH-------------------------------------HHHHHHHHH---H
Confidence 00000 001111111 2
Q ss_pred CCCeEEEEcCCHH--------HHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccc
Q 000916 560 EDGAILVFLPGWE--------DINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETA 631 (1225)
Q Consensus 560 ~~G~ILVFLpG~~--------eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtS 631 (1225)
..+.++||+|..+ .+..+++.|... + ..+.|..+||.|+.+++.++++.+..|..+|+|||+++|.|
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~--~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 544 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEA--F---PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVG 544 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHH--C---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeC
Confidence 3568999999644 345566666543 1 12679999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecC
Q 000916 632 ITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYS 690 (1225)
Q Consensus 632 ITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys 690 (1225)
|+||++.+||..+ +.. -+-+.+.||+||+||.+ +|.||.+++
T Consensus 545 iDip~v~~VIi~~--------~~r---------~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 545 VDVPNATVMVIEN--------AER---------FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cccCCCcEEEEeC--------CCC---------CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999644 321 12356789999999976 599999996
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.92 E-value=1.6e-23 Score=261.90 Aligned_cols=309 Identities=17% Similarity=0.239 Sum_probs=200.5
Q ss_pred HHHhhcCCC--ChHHHHHHHHHHHcC------CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHH
Q 000916 181 IVEERSKLP--ISSFKDVITSTVDSN------QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVA 252 (1225)
Q Consensus 181 ~~~~R~~LP--i~~~r~eIl~aI~~~------~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvA 252 (1225)
+.++...|| ....|++.+..|.+. ...+|+|+||||||..+-..++..... ..++++..|+|+.|.+++
T Consensus 225 ~~~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~ 301 (630)
T TIGR00643 225 LTKFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHY 301 (630)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHH
Confidence 345566777 567888888888654 247999999999999887777765532 357999999999999999
Q ss_pred HHHHHHhCCccCCeEEEEEeecc----------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEE
Q 000916 253 ERISVERGENIGDNIGYKIRLES----------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHII 322 (1225)
Q Consensus 253 eRVa~Erge~lG~~VGY~IR~es----------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVI 322 (1225)
+.+.+.. ..+|-.|+.-....+ ..+.+..|+++|++.|... ..+.++++||
T Consensus 302 ~~~~~l~-~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~------------------~~~~~l~lvV 362 (630)
T TIGR00643 302 NSLRNLL-APLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK------------------VEFKRLALVI 362 (630)
T ss_pred HHHHHHh-cccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc------------------ccccccceEE
Confidence 9876543 344555554332111 1123468999999976431 2578899999
Q ss_pred eccccccccchhHHHHHHHHhCcCCCCceEEEEcccccHHHHHh-hhCCCCeE---ecCCcccceeEEEehhhHHhhhhc
Q 000916 323 VDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLDADRFSQ-YFGGCPVI---QVPGFTYPVKSFYLEDVLSILKSA 398 (1225)
Q Consensus 323 vDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATld~~~Fs~-yF~~~pvi---~I~gr~~pV~~~yLedil~~~~~~ 398 (1225)
|||+|.-+... ...|+.......+.++++||||.....+.. .|+...+. ..|....|+..++...
T Consensus 363 IDEaH~fg~~q---r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~-------- 431 (630)
T TIGR00643 363 IDEQHRFGVEQ---RKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKH-------- 431 (630)
T ss_pred EechhhccHHH---HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCc--------
Confidence 99999633221 122222222112578999999975544332 22221111 1111112332222110
Q ss_pred cccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchh
Q 000916 399 ESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDV 478 (1225)
Q Consensus 399 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~ 478 (1225)
T Consensus 432 -------------------------------------------------------------------------------- 431 (630)
T TIGR00643 432 -------------------------------------------------------------------------------- 431 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhc
Q 000916 479 CMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMD 558 (1225)
Q Consensus 479 ~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~ 558 (1225)
.....+. ..+...+
T Consensus 432 --------------------------~~~~~~~-------------------------------------~~i~~~l--- 445 (630)
T TIGR00643 432 --------------------------DEKDIVY-------------------------------------EFIEEEI--- 445 (630)
T ss_pred --------------------------chHHHHH-------------------------------------HHHHHHH---
Confidence 0000000 0011111
Q ss_pred CCCCeEEEEcCCHH--------HHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhcc
Q 000916 559 SEDGAILVFLPGWE--------DINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAET 630 (1225)
Q Consensus 559 ~~~G~ILVFLpG~~--------eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEt 630 (1225)
...+.++||+|..+ .++.+++.|... + ..+.|..+||+|+++++.++++.+..|..+|+|||+++|+
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~--~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 520 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA--F---PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEV 520 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhh--C---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeec
Confidence 13467888888653 345566666542 1 2467999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecC
Q 000916 631 AITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYS 690 (1225)
Q Consensus 631 SITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys 690 (1225)
||+||++.+||..+ +.. .+-+.+.||+|||||.+ +|.||.++.
T Consensus 521 GvDiP~v~~VIi~~--------~~r---------~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 521 GVDVPNATVMVIED--------AER---------FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CcccCCCcEEEEeC--------CCc---------CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999999533 322 13467889999999976 699999983
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.92 E-value=2.6e-23 Score=270.59 Aligned_cols=303 Identities=21% Similarity=0.206 Sum_probs=201.7
Q ss_pred HhhcCCC--ChHHHHHHHHHHHcC------CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHH
Q 000916 183 EERSKLP--ISSFKDVITSTVDSN------QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAER 254 (1225)
Q Consensus 183 ~~R~~LP--i~~~r~eIl~aI~~~------~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeR 254 (1225)
++-.++| -...|.+.++.|..+ ..++++|+||||||..+-..++... . ..++++|..|+|+.|.++++.
T Consensus 592 ~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~-~--~g~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-E--NHKQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH-H--cCCeEEEEeCcHHHHHHHHHH
Confidence 3334555 556778888888775 7899999999999986544443332 2 246899999999999999997
Q ss_pred HHHHhCCccCCeEEEEEeeccc----------CCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEec
Q 000916 255 ISVERGENIGDNIGYKIRLESK----------GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVD 324 (1225)
Q Consensus 255 Va~Erge~lG~~VGY~IR~es~----------~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvD 324 (1225)
+.+.. ...+-.|+.-.++.+. .....+|+++|++.| ..+ ..+.++.+||||
T Consensus 669 f~~~~-~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~--------------v~~~~L~lLVID 729 (1147)
T PRK10689 669 FRDRF-ANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSD--------------VKWKDLGLLIVD 729 (1147)
T ss_pred HHHhh-ccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCC--------------CCHhhCCEEEEe
Confidence 76543 3334445444333221 012458999999743 222 257899999999
Q ss_pred cccccccchhHHHHHHHHhCcCCCCceEEEEcccccHHH--HHhhh-CCCCeEecCC-cccceeEEEehhhHHhhhhccc
Q 000916 325 EIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLDADR--FSQYF-GGCPVIQVPG-FTYPVKSFYLEDVLSILKSAES 400 (1225)
Q Consensus 325 EvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATld~~~--Fs~yF-~~~pvi~I~g-r~~pV~~~yLedil~~~~~~~~ 400 (1225)
|+|.-+.. . ...++ ...++.++++||||+.... ++.++ .+..+|..+. ...+|+.++.+.
T Consensus 730 EahrfG~~--~-~e~lk---~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~---------- 793 (1147)
T PRK10689 730 EEHRFGVR--H-KERIK---AMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREY---------- 793 (1147)
T ss_pred chhhcchh--H-HHHHH---hcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEec----------
Confidence 99964321 1 12222 2356889999999985443 33332 2333333321 112333222110
Q ss_pred cccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhh
Q 000916 401 NHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCM 480 (1225)
Q Consensus 401 ~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ 480 (1225)
T Consensus 794 -------------------------------------------------------------------------------- 793 (1147)
T PRK10689 794 -------------------------------------------------------------------------------- 793 (1147)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCC
Q 000916 481 LLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSE 560 (1225)
Q Consensus 481 ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~ 560 (1225)
+ +..+...++..+. .
T Consensus 794 ----------------------------------------------------------~----~~~~k~~il~el~---r 808 (1147)
T PRK10689 794 ----------------------------------------------------------D----SLVVREAILREIL---R 808 (1147)
T ss_pred ----------------------------------------------------------C----cHHHHHHHHHHHh---c
Confidence 0 0000011122222 3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEE
Q 000916 561 DGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYV 640 (1225)
Q Consensus 561 ~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~V 640 (1225)
.|.++||++..+.++.+.+.|.... ..+.|..+||+|+..++.+++..+..|+.+|+|||+|+|+||+||+|.+|
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~-----p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~V 883 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV-----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC-----CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEE
Confidence 5889999999999999999997641 23578889999999999999999999999999999999999999999999
Q ss_pred EeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecC
Q 000916 641 IDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYS 690 (1225)
Q Consensus 641 IDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys 690 (1225)
|- +++.+ -+-+.+.||+||+||.+. |.||-+|+
T Consensus 884 Ii--------~~ad~---------fglaq~~Qr~GRvGR~g~~g~a~ll~~ 917 (1147)
T PRK10689 884 II--------ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLTP 917 (1147)
T ss_pred EE--------ecCCC---------CCHHHHHHHhhccCCCCCceEEEEEeC
Confidence 92 11111 012468899999999764 99998885
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.92 E-value=5.1e-23 Score=262.85 Aligned_cols=297 Identities=20% Similarity=0.231 Sum_probs=202.8
Q ss_pred ChHHHHHHHHHHHcC------CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCcc
Q 000916 190 ISSFKDVITSTVDSN------QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~------~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
-...|.+.++.|.++ ..++|+|+||||||..+-..++..... ..++++..|++++|.++++.+.+.. ...
T Consensus 452 ~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~LA~Q~~~~f~~~~-~~~ 527 (926)
T TIGR00580 452 ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTLLAQQHFETFKERF-ANF 527 (926)
T ss_pred CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHHHHHHHHHHHHHHh-ccC
Confidence 357778888888764 678999999999998776666665532 2689999999999999999776543 345
Q ss_pred CCeEEEEEeeccc----------CCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccch
Q 000916 264 GDNIGYKIRLESK----------GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYS 333 (1225)
Q Consensus 264 G~~VGY~IR~es~----------~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~t 333 (1225)
+-.|+.-.++-+. ...+..|+++|+..| ..+ -.+.++++|||||+|.-+..
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~--------------v~f~~L~llVIDEahrfgv~- 588 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKD--------------VKFKDLGLLIIDEEQRFGVK- 588 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCC--------------CCcccCCEEEeecccccchh-
Confidence 5555543332210 012468999999432 222 26789999999999963321
Q ss_pred hHHHHHHHHhCcCCCCceEEEEcccccHHHHHhh-hC--CCCeEecC-CcccceeEEEehhhHHhhhhcccccccccccc
Q 000916 334 DFMLAIIRDMLPSYPHLRLILMSATLDADRFSQY-FG--GCPVIQVP-GFTYPVKSFYLEDVLSILKSAESNHLDSASLI 409 (1225)
Q Consensus 334 D~LL~lLk~ll~~~~~LKlILMSATld~~~Fs~y-F~--~~pvi~I~-gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~ 409 (1225)
....|+. ..++.++++||||+....+... ++ +..+|..+ ....||+.++.+.-
T Consensus 589 --~~~~L~~---~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~------------------ 645 (926)
T TIGR00580 589 --QKEKLKE---LRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYD------------------ 645 (926)
T ss_pred --HHHHHHh---cCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecC------------------
Confidence 1222332 3457899999999866554332 22 22223222 12234444332100
Q ss_pred CCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccch
Q 000916 410 VPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQ 489 (1225)
Q Consensus 410 ~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~ 489 (1225)
T Consensus 646 -------------------------------------------------------------------------------- 645 (926)
T TIGR00580 646 -------------------------------------------------------------------------------- 645 (926)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcC
Q 000916 490 LKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLP 569 (1225)
Q Consensus 490 ~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLp 569 (1225)
. .. +...++..+ ...|.++||+|
T Consensus 646 ------------------~---~~---------------------------------i~~~i~~el---~~g~qv~if~n 668 (926)
T TIGR00580 646 ------------------P---EL---------------------------------VREAIRREL---LRGGQVFYVHN 668 (926)
T ss_pred ------------------H---HH---------------------------------HHHHHHHHH---HcCCeEEEEEC
Confidence 0 00 000111111 13588999999
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccc
Q 000916 570 GWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEK 649 (1225)
Q Consensus 570 G~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~ 649 (1225)
..++++.+.+.|...- ..+.|..+||.|+..++.++++.+..|+.+|+|||+|+|+||+||+|.+||..
T Consensus 669 ~i~~~e~l~~~L~~~~-----p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~------ 737 (926)
T TIGR00580 669 RIESIEKLATQLRELV-----PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIE------ 737 (926)
T ss_pred CcHHHHHHHHHHHHhC-----CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEe------
Confidence 9999999999997631 23689999999999999999999999999999999999999999999999953
Q ss_pred cccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCH
Q 000916 650 SYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQ 691 (1225)
Q Consensus 650 ~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~ 691 (1225)
|+.. -+-+.+.||+||+||.+ .|.||-|++.
T Consensus 738 --~a~~---------~gls~l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 738 --RADK---------FGLAQLYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred --cCCC---------CCHHHHHHHhcCCCCCCCCeEEEEEECC
Confidence 3221 12346789999999966 5999999864
No 47
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3.8e-24 Score=243.87 Aligned_cols=313 Identities=18% Similarity=0.214 Sum_probs=220.2
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhcc---CCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEE
Q 000916 194 KDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK---GETCKIVCTQPRRISATSVAERISVERGENIGDNIGYK 270 (1225)
Q Consensus 194 r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~---~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~ 270 (1225)
|...|..-.-++.++-++.||||||..+-.+|||.++-+ -...+|+|..|+|.+||+|.. |......-+-.+||..
T Consensus 208 Q~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~s-V~~qlaqFt~I~~~L~ 286 (691)
T KOG0338|consen 208 QVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHS-VTKQLAQFTDITVGLA 286 (691)
T ss_pred hhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHH-HHHHHHhhccceeeee
Confidence 344444444567777899999999999999999998743 245699999999999999987 6666555555677777
Q ss_pred Eeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhC
Q 000916 271 IRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDML 344 (1225)
Q Consensus 271 IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll 344 (1225)
|..-+ .......|+++|||.|+.+|.+.+. ..|+++-++|+||++ |.++..|-- -+++++
T Consensus 287 vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~s------------f~ldsiEVLvlDEAD-RMLeegFad-emnEii 352 (691)
T KOG0338|consen 287 VGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPS------------FNLDSIEVLVLDEAD-RMLEEGFAD-EMNEII 352 (691)
T ss_pred ecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCC------------ccccceeEEEechHH-HHHHHHHHH-HHHHHH
Confidence 76543 2345678999999999999998753 589999999999999 888776632 344444
Q ss_pred cCCC-CceEEEEcccc--cHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhh
Q 000916 345 PSYP-HLRLILMSATL--DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEEN 421 (1225)
Q Consensus 345 ~~~~-~LKlILMSATl--d~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 421 (1225)
...| +-+.+|+|||| .++.+...=- .-||+++.-+. .+ ..+.|+.++
T Consensus 353 ~lcpk~RQTmLFSATMteeVkdL~slSL----------~kPvrifvd~~------------~~--------~a~~LtQEF 402 (691)
T KOG0338|consen 353 RLCPKNRQTMLFSATMTEEVKDLASLSL----------NKPVRIFVDPN------------KD--------TAPKLTQEF 402 (691)
T ss_pred HhccccccceeehhhhHHHHHHHHHhhc----------CCCeEEEeCCc------------cc--------cchhhhHHH
Confidence 4333 56889999999 3555655322 24666543110 00 000111110
Q ss_pred hhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhh
Q 000916 422 KSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQL 501 (1225)
Q Consensus 422 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~ 501 (1225)
.. .
T Consensus 403 iR--------------------------------I--------------------------------------------- 405 (691)
T KOG0338|consen 403 IR--------------------------------I--------------------------------------------- 405 (691)
T ss_pred he--------------------------------e---------------------------------------------
Confidence 00 0
Q ss_pred ccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHH
Q 000916 502 GEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRL 581 (1225)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L 581 (1225)
+.+.+..- ..+|..++...-...++||+-+.....++.=.|
T Consensus 406 -----------------------------------R~~re~dR----ea~l~~l~~rtf~~~~ivFv~tKk~AHRl~Ill 446 (691)
T KOG0338|consen 406 -----------------------------------RPKREGDR----EAMLASLITRTFQDRTIVFVRTKKQAHRLRILL 446 (691)
T ss_pred -----------------------------------cccccccc----HHHHHHHHHHhcccceEEEEehHHHHHHHHHHH
Confidence 00000000 111222222233567999999999998886544
Q ss_pred HcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCccccc
Q 000916 582 LANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQ 661 (1225)
Q Consensus 582 ~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~ 661 (1225)
- +. .+.+--|||+|+++++-..++.|..+...|+|||++|.+||+|++|..|||+..
T Consensus 447 G---Ll----gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~m---------------- 503 (691)
T KOG0338|consen 447 G---LL----GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAM---------------- 503 (691)
T ss_pred H---Hh----hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccC----------------
Confidence 2 11 256777999999999999999999999999999999999999999999999776
Q ss_pred ccccCHhhHHhhcCccCCCcc-eEEEEecCHH
Q 000916 662 SSWVSKASAKQRAGRAGRCQA-GICYHLYSQL 692 (1225)
Q Consensus 662 ~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~ 692 (1225)
|.+.-.|.||.||+.|.+. |....|..+.
T Consensus 504 --P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~ 533 (691)
T KOG0338|consen 504 --PKTIEHYLHRVGRTARAGRAGRSVTLVGES 533 (691)
T ss_pred --chhHHHHHHHhhhhhhcccCcceEEEeccc
Confidence 6677788999998877654 9999998864
No 48
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.91 E-value=1.5e-23 Score=240.77 Aligned_cols=316 Identities=19% Similarity=0.234 Sum_probs=215.8
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc----cCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEE
Q 000916 193 FKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS----KGETCKIVCTQPRRISATSVAERISVERGENIGDNIG 268 (1225)
Q Consensus 193 ~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~----~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VG 268 (1225)
+++.|--++ .+..|+-.+.||||||.++..++||.++. ...+.-.++.-|+|..|+++.+-+ ...|...+-+.|
T Consensus 96 Q~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL-~kvgk~h~fSaG 173 (758)
T KOG0343|consen 96 QRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVL-NKVGKHHDFSAG 173 (758)
T ss_pred HHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHH-HHHhhccccccc
Confidence 344444455 45556678999999999999999999863 334455777889999999998844 333433344555
Q ss_pred EEEeec-----ccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHh
Q 000916 269 YKIRLE-----SKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDM 343 (1225)
Q Consensus 269 Y~IR~e-----s~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~l 343 (1225)
.-|..- ...-.+..|++||||.||++|...+. ..-+++-.+|+||++ |.+++.|--.+ -.+
T Consensus 174 LiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~------------f~t~~lQmLvLDEAD-R~LDMGFk~tL-~~I 239 (758)
T KOG0343|consen 174 LIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPN------------FSTSNLQMLVLDEAD-RMLDMGFKKTL-NAI 239 (758)
T ss_pred eeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCC------------CCCCcceEEEeccHH-HHHHHhHHHHH-HHH
Confidence 555432 22234678999999999999987753 356788999999999 88888884332 223
Q ss_pred Cc-CCCCceEEEEcccc--cHHHHHhhhCCCC-eEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhh
Q 000916 344 LP-SYPHLRLILMSATL--DADRFSQYFGGCP-VIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTE 419 (1225)
Q Consensus 344 l~-~~~~LKlILMSATl--d~~~Fs~yF~~~p-vi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~ 419 (1225)
+. ..+.-+.+|+|||- .+..+++.--.-| .|.|. +.. ..+.|
T Consensus 240 i~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvh-----------e~a---------------~~atP-------- 285 (758)
T KOG0343|consen 240 IENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVH-----------ENA---------------VAATP-------- 285 (758)
T ss_pred HHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEe-----------ccc---------------cccCh--------
Confidence 32 33466899999997 5566665422222 22211 000 00000
Q ss_pred hhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhh
Q 000916 420 ENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTAL 499 (1225)
Q Consensus 420 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~ 499 (1225)
T Consensus 286 -------------------------------------------------------------------------------- 285 (758)
T KOG0343|consen 286 -------------------------------------------------------------------------------- 285 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHH
Q 000916 500 QLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRD 579 (1225)
Q Consensus 500 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~ 579 (1225)
..|-+.|+...-.+.|| +|.....+...-.+|||+.+..++..+++
T Consensus 286 ----------------------------~~L~Q~y~~v~l~~Ki~------~L~sFI~shlk~K~iVF~SscKqvkf~~e 331 (758)
T KOG0343|consen 286 ----------------------------SNLQQSYVIVPLEDKID------MLWSFIKSHLKKKSIVFLSSCKQVKFLYE 331 (758)
T ss_pred ----------------------------hhhhheEEEEehhhHHH------HHHHHHHhccccceEEEEehhhHHHHHHH
Confidence 00000111111111121 12222233456678999999999999998
Q ss_pred HHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCccc
Q 000916 580 RLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVST 659 (1225)
Q Consensus 580 ~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~ 659 (1225)
...... +...++.|||.|++..|..||..|-...--|++||+||.+|++.|-|..||...+
T Consensus 332 ~F~rlr-----pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DC-------------- 392 (758)
T KOG0343|consen 332 AFCRLR-----PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDC-------------- 392 (758)
T ss_pred HHHhcC-----CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecC--------------
Confidence 876532 3478999999999999999999987777789999999999999999999996444
Q ss_pred ccccccCHhhHHhhcCccCCCcc-eEEEEecCHHHHh
Q 000916 660 LQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLRAA 695 (1225)
Q Consensus 660 L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~~~ 695 (1225)
|..-+.|.||.||+.|-.. |.|+-+.+....+
T Consensus 393 ----Pedv~tYIHRvGRtAR~~~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 393 ----PEDVDTYIHRVGRTARYKERGESLLMLTPSEEE 425 (758)
T ss_pred ----chhHHHHHHHhhhhhcccCCCceEEEEcchhHH
Confidence 6667789999999999765 9999998875543
No 49
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.4e-23 Score=238.60 Aligned_cols=365 Identities=22% Similarity=0.243 Sum_probs=237.8
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc------cCCccEEEEecchHHHHHHHHHHHHHHhCCc
Q 000916 189 PISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS------KGETCKIVCTQPRRISATSVAERISVERGEN 262 (1225)
Q Consensus 189 Pi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~------~~~~~~IicTQPRRiaAisvAeRVa~Erge~ 262 (1225)
|..- |.+.|..|.+++.++|.+.||||||..+..+|.+.+.. +..+.-.+|..|+|..|.++.+-|.+-...-
T Consensus 160 pTsV-Qkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~ 238 (708)
T KOG0348|consen 160 PTSV-QKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPF 238 (708)
T ss_pred cchH-hhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCc
Confidence 4443 44445555668899999999999999999999988753 2334567899999999999999776655443
Q ss_pred cCCeEEEEEeecccCCC------CccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhH-
Q 000916 263 IGDNIGYKIRLESKGGK------HSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDF- 335 (1225)
Q Consensus 263 lG~~VGY~IR~es~~s~------~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~- 335 (1225)
.-..-||-+..|.+.++ ...|++.|||.|+.+|.+-.. ..++.+.+||+||++ |-++..|
T Consensus 239 hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~------------i~~s~LRwlVlDEaD-rlleLGfe 305 (708)
T KOG0348|consen 239 HWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS------------IKFSRLRWLVLDEAD-RLLELGFE 305 (708)
T ss_pred eEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch------------heeeeeeEEEecchh-HHHhccch
Confidence 33345777888888764 458999999999999987531 367889999999999 4444333
Q ss_pred --HHHHHHHh----CcCCC------CceEEEEccccc--HHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhcccc
Q 000916 336 --MLAIIRDM----LPSYP------HLRLILMSATLD--ADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESN 401 (1225)
Q Consensus 336 --LL~lLk~l----l~~~~------~LKlILMSATld--~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~ 401 (1225)
+-.+|+-+ ..... .++-+|+|||+. +..+++.=-. -||-+- |+.....+
T Consensus 306 kdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLk----------Dpv~I~-ld~s~~~~------ 368 (708)
T KOG0348|consen 306 KDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLK----------DPVYIS-LDKSHSQL------ 368 (708)
T ss_pred hhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhcccc----------Cceeee-ccchhhhc------
Confidence 11223322 11112 366789999993 5556553211 122222 21100000
Q ss_pred ccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhh
Q 000916 402 HLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCML 481 (1225)
Q Consensus 402 ~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~l 481 (1225)
.| -++|+.. +++- . +| ..+
T Consensus 369 --------~p-------------~~~a~~e---------------------v~~~---~---------~~-~~l------ 387 (708)
T KOG0348|consen 369 --------NP-------------KDKAVQE---------------------VDDG---P---------AG-DKL------ 387 (708)
T ss_pred --------Cc-------------chhhhhh---------------------cCCc---c---------cc-ccc------
Confidence 00 0011100 0000 0 00 000
Q ss_pred hhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCC
Q 000916 482 LSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSED 561 (1225)
Q Consensus 482 l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~ 561 (1225)
+.. .....|+..|. +-|...-+..+..+|..+|.....
T Consensus 388 -------------~~~---------------------------~iPeqL~qry~--vVPpKLRLV~Laa~L~~~~k~~~~ 425 (708)
T KOG0348|consen 388 -------------DSF---------------------------AIPEQLLQRYT--VVPPKLRLVALAALLLNKVKFEEK 425 (708)
T ss_pred -------------ccc---------------------------cCcHHhhhceE--ecCCchhHHHHHHHHHHHhhhhhh
Confidence 000 00123334443 233445556677888889988888
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCC---------------CCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecc
Q 000916 562 GAILVFLPGWEDINKTRDRLLANPF---------------FRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTN 626 (1225)
Q Consensus 562 G~ILVFLpG~~eI~~l~~~L~~~~~---------------~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATN 626 (1225)
-..+||+...+-++--++.+..... ..-..+..++-|||+|++++|..+|+.|....+-|+|||+
T Consensus 426 qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTD 505 (708)
T KOG0348|consen 426 QKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTD 505 (708)
T ss_pred ceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehh
Confidence 8999999999999887777653211 0112356799999999999999999999999999999999
Q ss_pred hhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eE--EEEecCHHHHhcCCCCCCC
Q 000916 627 IAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GI--CYHLYSQLRAASLPDFQVP 703 (1225)
Q Consensus 627 IAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~--CyrLys~~~~~~m~~~~~P 703 (1225)
+|.+||++|+|..||. ||+ |-|-+.|.+|.||+.|.+. |. -|-+=++.+|.+..+...+
T Consensus 506 VAaRGLDlP~V~~vVQ--------Yd~----------P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 506 VAARGLDLPHVGLVVQ--------YDP----------PFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred hhhccCCCCCcCeEEE--------eCC----------CCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 9999999999999995 554 6688999999998877554 54 5555566667554444333
Q ss_pred cc
Q 000916 704 EI 705 (1225)
Q Consensus 704 EI 705 (1225)
-+
T Consensus 568 ~l 569 (708)
T KOG0348|consen 568 ML 569 (708)
T ss_pred hh
Confidence 33
No 50
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.3e-23 Score=223.15 Aligned_cols=309 Identities=18% Similarity=0.259 Sum_probs=212.7
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeec
Q 000916 195 DVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLE 274 (1225)
Q Consensus 195 ~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~e 274 (1225)
+..+..|.+++.||..+..|+|||..+-.-+|...--.....+++|..|+|..|.++-+-| .-+|...+-.+--.+...
T Consensus 55 qrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi-~alg~~mnvq~hacigg~ 133 (400)
T KOG0328|consen 55 QRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVI-LALGDYMNVQCHACIGGK 133 (400)
T ss_pred hhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHH-HHhcccccceEEEEecCC
Confidence 3345556778888899999999998776666655433334578999999999999998855 334444333333333222
Q ss_pred c------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhH---HHHHHHHhCc
Q 000916 275 S------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDF---MLAIIRDMLP 345 (1225)
Q Consensus 275 s------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~---LL~lLk~ll~ 345 (1225)
+ +..-..+++..|||..+.++....+ .-.++..+|+||++|. ++-.| +..++|-
T Consensus 134 n~gedikkld~G~hvVsGtPGrv~dmikr~~L-------------~tr~vkmlVLDEaDem-L~kgfk~Qiydiyr~--- 196 (400)
T KOG0328|consen 134 NLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSL-------------RTRAVKMLVLDEADEM-LNKGFKEQIYDIYRY--- 196 (400)
T ss_pred ccchhhhhhcccceEeeCCCchHHHHHHhccc-------------cccceeEEEeccHHHH-HHhhHHHHHHHHHHh---
Confidence 2 1223568999999999999987754 4678999999999973 22122 2222332
Q ss_pred CCCCceEEEEcccccHH--HHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhhhh
Q 000916 346 SYPHLRLILMSATLDAD--RFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKS 423 (1225)
Q Consensus 346 ~~~~LKlILMSATld~~--~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 423 (1225)
..|+.++|+.|||+.-+ ...++|... ||+++--.|- ++
T Consensus 197 lp~~~Qvv~~SATlp~eilemt~kfmtd----------pvrilvkrde-------------------------lt----- 236 (400)
T KOG0328|consen 197 LPPGAQVVLVSATLPHEILEMTEKFMTD----------PVRILVKRDE-------------------------LT----- 236 (400)
T ss_pred CCCCceEEEEeccCcHHHHHHHHHhcCC----------ceeEEEecCC-------------------------Cc-----
Confidence 34699999999999544 445666543 4443321110 00
Q ss_pred hhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhcc
Q 000916 424 TLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGE 503 (1225)
Q Consensus 424 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~ 503 (1225)
.|.|..
T Consensus 237 --lEgIKq------------------------------------------------------------------------ 242 (400)
T KOG0328|consen 237 --LEGIKQ------------------------------------------------------------------------ 242 (400)
T ss_pred --hhhhhh------------------------------------------------------------------------
Confidence 000100
Q ss_pred ccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHc
Q 000916 504 QENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLA 583 (1225)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~ 583 (1225)
|...++.|.-.++.+++|-..+ .-...+||+++...+..|.+++.+
T Consensus 243 ------------------------------f~v~ve~EewKfdtLcdLYd~L----tItQavIFcnTk~kVdwLtekm~~ 288 (400)
T KOG0328|consen 243 ------------------------------FFVAVEKEEWKFDTLCDLYDTL----TITQAVIFCNTKRKVDWLTEKMRE 288 (400)
T ss_pred ------------------------------heeeechhhhhHhHHHHHhhhh----ehheEEEEecccchhhHHHHHHHh
Confidence 0000000111112222222222 123468999999999999999986
Q ss_pred CCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCccccccc
Q 000916 584 NPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSS 663 (1225)
Q Consensus 584 ~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~ 663 (1225)
.. |.|-.+||.|+++|+.++.+.|+.|+-+|+++|++-.+||+|+.|..|||+.+
T Consensus 289 ~n-------ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDL------------------ 343 (400)
T KOG0328|consen 289 AN-------FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDL------------------ 343 (400)
T ss_pred hC-------ceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCC------------------
Confidence 53 78999999999999999999999999999999999999999999999999776
Q ss_pred ccCHhhHHhhcCccCCCcc-eEEEEecCHHHH
Q 000916 664 WVSKASAKQRAGRAGRCQA-GICYHLYSQLRA 694 (1225)
Q Consensus 664 wiSkasa~QR~GRAGR~~~-G~CyrLys~~~~ 694 (1225)
|.-+..|.||.||+||-+. |+.+.+....+.
T Consensus 344 P~nre~YIHRIGRSGRFGRkGvainFVk~~d~ 375 (400)
T KOG0328|consen 344 PNNRELYIHRIGRSGRFGRKGVAINFVKSDDL 375 (400)
T ss_pred CccHHHHhhhhccccccCCcceEEEEecHHHH
Confidence 5566889999999999765 999999987654
No 51
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.5e-23 Score=236.78 Aligned_cols=314 Identities=22% Similarity=0.281 Sum_probs=229.5
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhc-----cCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeE-
Q 000916 194 KDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWS-----KGETCKIVCTQPRRISATSVAERISVERGENIGDNI- 267 (1225)
Q Consensus 194 r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~-----~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~V- 267 (1225)
+.+++.....++.|+-.+.||||||..+.-..+.+... .|...-.++..|+|..|.+|.. +|+.+|...|-.|
T Consensus 250 q~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~-eaKkf~K~ygl~~v 328 (731)
T KOG0339|consen 250 QCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFS-EAKKFGKAYGLRVV 328 (731)
T ss_pred cccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHH-HHHHhhhhccceEE
Confidence 56677777788889989999999999998888877642 2444556677899999999876 6666654444322
Q ss_pred -EEEEe--ec--ccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHH
Q 000916 268 -GYKIR--LE--SKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRD 342 (1225)
Q Consensus 268 -GY~IR--~e--s~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ 342 (1225)
-|+=. .| +-....+-|++||||.|+.++.-... +|.++|++|+||++ |..++.|+-.+-..
T Consensus 329 ~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKat-------------n~~rvS~LV~DEad-rmfdmGfe~qVrSI 394 (731)
T KOG0339|consen 329 AVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKAT-------------NLSRVSYLVLDEAD-RMFDMGFEPQVRSI 394 (731)
T ss_pred EeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcc-------------cceeeeEEEEechh-hhhccccHHHHHHH
Confidence 12110 00 11124678999999999999987653 89999999999999 88888887766555
Q ss_pred hCcCCCCceEEEEcccc--cHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhh
Q 000916 343 MLPSYPHLRLILMSATL--DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEE 420 (1225)
Q Consensus 343 ll~~~~~LKlILMSATl--d~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 420 (1225)
.-..+|+-+.+++|||+ .++.+++=|-.-||-.|.|. |-. .+
T Consensus 395 ~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~---vge------------an--------------------- 438 (731)
T KOG0339|consen 395 KQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGE---VGE------------AN--------------------- 438 (731)
T ss_pred HhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEee---hhc------------cc---------------------
Confidence 55678999999999999 56777776655565554441 100 00
Q ss_pred hhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhh
Q 000916 421 NKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQ 500 (1225)
Q Consensus 421 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~ 500 (1225)
+.|. + .+...++
T Consensus 439 ------~dIT------------Q---------~V~V~~s----------------------------------------- 450 (731)
T KOG0339|consen 439 ------EDIT------------Q---------TVSVCPS----------------------------------------- 450 (731)
T ss_pred ------cchh------------h---------eeeeccC-----------------------------------------
Confidence 0000 0 0000000
Q ss_pred hccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHH
Q 000916 501 LGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDR 580 (1225)
Q Consensus 501 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~ 580 (1225)
+...+.-|++|+......|.+|||++-..+.+++...
T Consensus 451 -------------------------------------------~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~ 487 (731)
T KOG0339|consen 451 -------------------------------------------EEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAAN 487 (731)
T ss_pred -------------------------------------------cHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHH
Confidence 0011223455666667789999999999999999988
Q ss_pred HHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccc
Q 000916 581 LLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTL 660 (1225)
Q Consensus 581 L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L 660 (1225)
|.-.. |.|..||+.|.+.+|.+++..+.++...|++||++|.+++||+++.-||++.+.+ .+
T Consensus 488 Lklk~-------~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ar--------dI--- 549 (731)
T KOG0339|consen 488 LKLKG-------FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFAR--------DI--- 549 (731)
T ss_pred hcccc-------ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccc--------hh---
Confidence 86543 8899999999999999999999999999999999999999999999999855533 22
Q ss_pred cccccCHhhHHhhcCccCCCcc-eEEEEecCHHHH
Q 000916 661 QSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLRA 694 (1225)
Q Consensus 661 ~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~~ 694 (1225)
.-+.||.||+||.+. |+.|.|.|+.+-
T Consensus 550 -------dththrigrtgRag~kGvayTlvTeKDa 577 (731)
T KOG0339|consen 550 -------DTHTHRIGRTGRAGEKGVAYTLVTEKDA 577 (731)
T ss_pred -------HHHHHHhhhcccccccceeeEEechhhH
Confidence 345699999999887 999999998654
No 52
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=4.8e-23 Score=227.18 Aligned_cols=325 Identities=22% Similarity=0.309 Sum_probs=224.4
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccC
Q 000916 185 RSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIG 264 (1225)
Q Consensus 185 R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG 264 (1225)
+..-|| |+..+..|..++.+|-++.||||||+.+-.+||+.+-....+.--++.-|+|..|.++||++.. .|..++
T Consensus 28 ~~pTpi---Q~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~a-lGk~l~ 103 (442)
T KOG0340|consen 28 KKPTPI---QQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIA-LGKLLN 103 (442)
T ss_pred CCCCch---HhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHH-hccccc
Confidence 344454 6778899999999999999999999999999999976555555677888999999999999854 455555
Q ss_pred CeEEEEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHH
Q 000916 265 DNIGYKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLA 338 (1225)
Q Consensus 265 ~~VGY~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~ 338 (1225)
..+---+.+.+ ..+++.+++++|+|.|-..+.+++. .....+.++.++|||||+ |-++.+|--
T Consensus 104 lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~---------~~~~~~~rlkflVlDEAD-rvL~~~f~d- 172 (442)
T KOG0340|consen 104 LKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLG---------VCSWIFQRLKFLVLDEAD-RVLAGCFPD- 172 (442)
T ss_pred ceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCc---------cchhhhhceeeEEecchh-hhhccchhh-
Confidence 54444444443 3467889999999999998887631 112468899999999999 777776632
Q ss_pred HHHHhCcCCCC-ceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcch
Q 000916 339 IIRDMLPSYPH-LRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPEL 417 (1225)
Q Consensus 339 lLk~ll~~~~~-LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~ 417 (1225)
.|+.+...-|. -+-.|+||||+ +...+.|+ ||+-.- ..| +++-+ + .++
T Consensus 173 ~L~~i~e~lP~~RQtLlfSATit-d~i~ql~~-~~i~k~--~a~-----~~e~~------------~----~vs------ 221 (442)
T KOG0340|consen 173 ILEGIEECLPKPRQTLLFSATIT-DTIKQLFG-CPITKS--IAF-----ELEVI------------D----GVS------ 221 (442)
T ss_pred HHhhhhccCCCccceEEEEeehh-hHHHHhhc-CCcccc--cce-----EEecc------------C----CCC------
Confidence 23333333333 48899999993 22333443 443210 111 11110 0 000
Q ss_pred hhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccch
Q 000916 418 TEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRT 497 (1225)
Q Consensus 418 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~ 497 (1225)
.++++.
T Consensus 222 -------tvetL~------------------------------------------------------------------- 227 (442)
T KOG0340|consen 222 -------TVETLY------------------------------------------------------------------- 227 (442)
T ss_pred -------chhhhh-------------------------------------------------------------------
Confidence 000000
Q ss_pred hhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHH
Q 000916 498 ALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKT 577 (1225)
Q Consensus 498 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l 577 (1225)
..|... ..+..|..| .++|.... +.+.++|.||.....+.+.+
T Consensus 228 ----------------------------------q~yI~~-~~~vkdaYL-v~~Lr~~~-~~~~~simIFvnttr~cQ~l 270 (442)
T KOG0340|consen 228 ----------------------------------QGYILV-SIDVKDAYL-VHLLRDFE-NKENGSIMIFVNTTRECQLL 270 (442)
T ss_pred ----------------------------------hheeec-chhhhHHHH-HHHHhhhh-hccCceEEEEeehhHHHHHH
Confidence 000000 000011111 12222222 23689999999999999999
Q ss_pred HHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCc
Q 000916 578 RDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNV 657 (1225)
Q Consensus 578 ~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~ 657 (1225)
...|... .+.+..|||.|++.++-..+.+|+.+.-+|++||++|.+|++||.|..|||....+
T Consensus 271 ~~~l~~l-------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr---------- 333 (442)
T KOG0340|consen 271 SMTLKNL-------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPR---------- 333 (442)
T ss_pred HHHHhhh-------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCC----------
Confidence 9888754 38899999999999999999999999999999999999999999999999977643
Q ss_pred ccccccccCHhhHHhhcCccCCCcc-eEEEEecCH
Q 000916 658 STLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQ 691 (1225)
Q Consensus 658 s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~ 691 (1225)
..-.|.||.||+.|.+. |..+.++++
T Consensus 334 --------~P~~yiHRvGRtARAGR~G~aiSivt~ 360 (442)
T KOG0340|consen 334 --------DPKDYIHRVGRTARAGRKGMAISIVTQ 360 (442)
T ss_pred --------CHHHHHHhhcchhcccCCcceEEEech
Confidence 33467789988777655 888888885
No 53
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=2.1e-23 Score=242.66 Aligned_cols=311 Identities=17% Similarity=0.189 Sum_probs=215.6
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccC----------CccEEEEecchHHHHHHHHHHHHHHhCCcc
Q 000916 194 KDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKG----------ETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 194 r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~----------~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
|+--+..|.+++.++++|+||||||-.+-.+|++.++..+ ....+++.-|+|.+|.++.++..+-.+...
T Consensus 101 Qk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~ 180 (482)
T KOG0335|consen 101 QKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSG 180 (482)
T ss_pred eeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccccc
Confidence 4556778999999999999999999999999998876431 236789999999999999998866543321
Q ss_pred -CCeEEEEEeec----ccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccc-hhHHH
Q 000916 264 -GDNIGYKIRLE----SKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRY-SDFML 337 (1225)
Q Consensus 264 -G~~VGY~IR~e----s~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~-tD~LL 337 (1225)
-..++|.=+-. ......+.|++||+|.|...+..... .|.++.++||||++ |.++ +.|--
T Consensus 181 ~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i-------------~l~~~k~~vLDEAD-rMlD~mgF~p 246 (482)
T KOG0335|consen 181 MKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKI-------------SLDNCKFLVLDEAD-RMLDEMGFEP 246 (482)
T ss_pred ceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhccee-------------ehhhCcEEEecchH-Hhhhhccccc
Confidence 11233332111 12345789999999999999987643 78999999999999 6677 77765
Q ss_pred HHHHHhCcC----CCCceEEEEcccc--cHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCC
Q 000916 338 AIIRDMLPS----YPHLRLILMSATL--DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVP 411 (1225)
Q Consensus 338 ~lLk~ll~~----~~~LKlILMSATl--d~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p 411 (1225)
.+=+.+... ....+-+|+|||. +......||---. .+++--+ ..+....
T Consensus 247 ~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~-----------yi~laV~---rvg~~~~----------- 301 (482)
T KOG0335|consen 247 QIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDN-----------YIFLAVG---RVGSTSE----------- 301 (482)
T ss_pred cHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhcc-----------ceEEEEe---eeccccc-----------
Confidence 544443322 2367899999998 4555666663110 0000000 0000000
Q ss_pred CCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhh
Q 000916 412 NEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLK 491 (1225)
Q Consensus 412 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~ 491 (1225)
+..+
T Consensus 302 -------------------------------------------ni~q--------------------------------- 305 (482)
T KOG0335|consen 302 -------------------------------------------NITQ--------------------------------- 305 (482)
T ss_pred -------------------------------------------ccee---------------------------------
Confidence 0000
Q ss_pred ccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhc---CCCC-----e
Q 000916 492 AKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMD---SEDG-----A 563 (1225)
Q Consensus 492 ~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~---~~~G-----~ 563 (1225)
-+.|. .+.+++.+|+..+... ...| .
T Consensus 306 ------~i~~V----------------------------------------~~~~kr~~Lldll~~~~~~~~~~~~~~e~ 339 (482)
T KOG0335|consen 306 ------KILFV----------------------------------------NEMEKRSKLLDLLNKDDGPPSDGEPKWEK 339 (482)
T ss_pred ------Eeeee----------------------------------------cchhhHHHHHHHhhcccCCcccCCcccce
Confidence 00000 0001111111111111 1234 8
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeC
Q 000916 564 ILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDS 643 (1225)
Q Consensus 564 ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDs 643 (1225)
+|||+-.......+...|...+ +...++||..++.+|.+....++.|...|+||||||++||+|++|++||++
T Consensus 340 tlvFvEt~~~~d~l~~~l~~~~-------~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIny 412 (482)
T KOG0335|consen 340 TLVFVETKRGADELAAFLSSNG-------YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINY 412 (482)
T ss_pred EEEEeeccchhhHHHHHHhcCC-------CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEe
Confidence 9999999999999999887654 678899999999999999999999999999999999999999999999986
Q ss_pred CCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecC
Q 000916 644 GRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYS 690 (1225)
Q Consensus 644 G~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys 690 (1225)
.+. -.-..|.||.||+||++. |...-||.
T Consensus 413 DmP------------------~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 413 DMP------------------ADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred ecC------------------cchhhHHHhccccccCCCCceeEEEec
Confidence 652 223578899999999987 99999997
No 54
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=4.6e-22 Score=229.46 Aligned_cols=426 Identities=20% Similarity=0.213 Sum_probs=251.6
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEE-
Q 000916 192 SFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYK- 270 (1225)
Q Consensus 192 ~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~- 270 (1225)
.||..|......+ .++|+-|||-|||+.--..+...+...+ . +|+.+.|++-++.+-|+.+..-+|-.-.+++-..
T Consensus 18 ~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltG 94 (542)
T COG1111 18 LYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-G-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTG 94 (542)
T ss_pred HHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-C-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecC
Confidence 4555555544443 6778899999999766655554443322 2 8999999999999999999888876555544321
Q ss_pred -EeecccCC--CCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCC
Q 000916 271 -IRLESKGG--KHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSY 347 (1225)
Q Consensus 271 -IR~es~~s--~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~ 347 (1225)
|+-+.+.- .+.+|+|+||.++..-|..+.+ ++.+++|||+|||| |.+-.-..--+.+..+...
T Consensus 95 ev~p~~R~~~w~~~kVfvaTPQvveNDl~~Gri-------------d~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 95 EVRPEEREELWAKKKVFVATPQVVENDLKAGRI-------------DLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred CCChHHHHHHHhhCCEEEeccHHHHhHHhcCcc-------------ChHHceEEEechhh-hccCcchHHHHHHHHHHhc
Confidence 22222111 2568999999999999998864 78999999999999 7776666666778788788
Q ss_pred CCceEEEEcccc--cHHHHHhhhCCCCeEecCCcc----------cceeEEEehhhHHhhhhccccccccccccCCCCCc
Q 000916 348 PHLRLILMSATL--DADRFSQYFGGCPVIQVPGFT----------YPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDP 415 (1225)
Q Consensus 348 ~~LKlILMSATl--d~~~Fs~yF~~~pvi~I~gr~----------~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~ 415 (1225)
.+.+++.|+||. +.+.+.+-..|-.+-+|.-|| +.++..+.+- .+|
T Consensus 161 k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV------------------~lp---- 218 (542)
T COG1111 161 KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKV------------------DLP---- 218 (542)
T ss_pred cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEec------------------cCc----
Confidence 899999999999 788888776654443333222 2333333221 001
Q ss_pred chhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccce----eeccCCccchhhhhhhccccchhh
Q 000916 416 ELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLM----VLAGKGRVGDVCMLLSLGADCQLK 491 (1225)
Q Consensus 416 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~----~~a~~~~~~~~~~ll~~g~~~~~~ 491 (1225)
+-.++.+..+.+++ +..++.+.+.|.-...+- -+......++ ..+ .+.-.+...+++.=+.+
T Consensus 219 ~e~~~ir~~l~~~l---------~~~Lk~L~~~g~~~~~~~-~~~kdl~~~~~~~~~~a-~~~~~~~~~~l~~~a~~--- 284 (542)
T COG1111 219 EEIKEIRDLLRDAL---------KPRLKPLKELGVIESSSP-VSKKDLLELRQIRLIMA-KNEDSDKFRLLSVLAEA--- 284 (542)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHcCceeccCc-ccHhHHHHHHHHHHHhc-cCccHHHHHHHHHHHHH---
Confidence 11112222222222 122222222221100000 0000000000 000 00001111111100000
Q ss_pred ccccchhhhhccccCchhHHHHHHHHhhhhhh---hhHHHHHHHhh----------hhccCcccccHHHHHHHHHHHHhc
Q 000916 492 AKDGRTALQLGEQENQPEVAQIIKKHMENALS---DSMKQQLLDKY----------LATVNPELIDLVLIEQLLRKICMD 558 (1225)
Q Consensus 492 ~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~ll~~y----------~~~~~~~~id~~Li~~ll~~I~~~ 558 (1225)
..-..++++-+..+-......+++-...... ......+.+.| ......++-.++.+..++......
T Consensus 285 -~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k 363 (542)
T COG1111 285 -IKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEK 363 (542)
T ss_pred -HHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhc
Confidence 0001122222333333333333322111111 00111111111 122233455567777777777766
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEE-----ecCCCCHHHHHHHhcCCCCCCceEEEecchhccccC
Q 000916 559 SEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIP-----LHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAIT 633 (1225)
Q Consensus 559 ~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~-----LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSIT 633 (1225)
..+..|+||..-++..+.+.+.|..... ..+...+. --.+|++.+|+++.+.|+.|...|+|||.|||-|++
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~~~---~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLD 440 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKIGI---KARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLD 440 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhcCC---cceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCC
Confidence 7778999999999999999999876531 11101111 125799999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHH
Q 000916 634 IDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQL 692 (1225)
Q Consensus 634 I~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~ 692 (1225)
||+|.+|| .|+|.. |---..||+||+||.++|..|-|+++.
T Consensus 441 Ip~vDlVi--------fYEpvp----------SeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 441 IPEVDLVI--------FYEPVP----------SEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred CCcccEEE--------EecCCc----------HHHHHHHhhCccccCCCCeEEEEEecC
Confidence 99999999 577653 334578999999999999999999874
No 55
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.90 E-value=2.9e-22 Score=248.38 Aligned_cols=386 Identities=20% Similarity=0.229 Sum_probs=269.7
Q ss_pred hhhHHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhcc-----CCccEEEEecchHHHHHH
Q 000916 176 ANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK-----GETCKIVCTQPRRISATS 250 (1225)
Q Consensus 176 ~~~~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~-----~~~~~IicTQPRRiaAis 250 (1225)
|.+++....+-.=| ...|.+.+..|.+++.|+|++|||||||..--.++++.+... ..+..+++.-|-|..+..
T Consensus 10 ~~v~~~~~~~~~~~-t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 10 PRVREWFKRKFTSL-TPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHH
Confidence 44556666553333 356778888999999999999999999999999999988755 234788999999999999
Q ss_pred HHHHHHHHhCCccCCeEEEEEeecccC--------CCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEE
Q 000916 251 VAERISVERGENIGDNIGYKIRLESKG--------GKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHII 322 (1225)
Q Consensus 251 vAeRVa~Erge~lG~~VGY~IR~es~~--------s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVI 322 (1225)
+-.|+ .+.++.+|..| .+|-.+.. ..-.+|+++||+-|--.|.+. .+...|+++.+||
T Consensus 89 i~~rL-~~~~~~~G~~v--~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-----------~~r~~l~~vr~VI 154 (814)
T COG1201 89 IRRRL-EEPLRELGIEV--AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-----------KFRELLRDVRYVI 154 (814)
T ss_pred HHHHH-HHHHHHcCCcc--ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-----------HHHHHhcCCcEEE
Confidence 99888 45556677777 56654422 123589999999998887764 3456899999999
Q ss_pred eccccc-----cccchhHHHHHHHHhCcCCCCceEEEEcccc-cHHHHHhhhCC----CCeEecCC-cccceeEEEehhh
Q 000916 323 VDEIHE-----RDRYSDFMLAIIRDMLPSYPHLRLILMSATL-DADRFSQYFGG----CPVIQVPG-FTYPVKSFYLEDV 391 (1225)
Q Consensus 323 vDEvHE-----R~~~tD~LL~lLk~ll~~~~~LKlILMSATl-d~~~Fs~yF~~----~pvi~I~g-r~~pV~~~yLedi 391 (1225)
|||+|| |+..--+.|.-|+.+.. +++-|.+|||+ +.+..++|+.+ |.|+.+.+ +.+.+++...+.-
T Consensus 155 VDEiHel~~sKRG~~Lsl~LeRL~~l~~---~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~ 231 (814)
T COG1201 155 VDEIHALAESKRGVQLALSLERLRELAG---DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVED 231 (814)
T ss_pred eehhhhhhccccchhhhhhHHHHHhhCc---ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCc
Confidence 999997 88877777777777755 89999999999 88999999864 34555553 2333443322110
Q ss_pred HHhhhhccccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeecc
Q 000916 392 LSILKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAG 471 (1225)
Q Consensus 392 l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~ 471 (1225)
+
T Consensus 232 ~------------------------------------------------------------------------------- 232 (814)
T COG1201 232 L------------------------------------------------------------------------------- 232 (814)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCccchhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHH
Q 000916 472 KGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQL 551 (1225)
Q Consensus 472 ~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~l 551 (1225)
.|+ + +..... ++.|.++
T Consensus 233 ----------------------------~~~---~-~~~~~~-------------------------------~~~i~~~ 249 (814)
T COG1201 233 ----------------------------IYD---E-ELWAAL-------------------------------YERIAEL 249 (814)
T ss_pred ----------------------------ccc---c-chhHHH-------------------------------HHHHHHH
Confidence 000 0 000000 0111122
Q ss_pred HHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccc
Q 000916 552 LRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETA 631 (1225)
Q Consensus 552 l~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtS 631 (1225)
+. ....+|||.+++...+.+...|..... ..|...||+|+.+.+..+-+++.+|..|+||||.-.|-|
T Consensus 250 v~------~~~ttLIF~NTR~~aE~l~~~L~~~~~------~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELG 317 (814)
T COG1201 250 VK------KHRTTLIFTNTRSGAERLAFRLKKLGP------DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELG 317 (814)
T ss_pred Hh------hcCcEEEEEeChHHHHHHHHHHHHhcC------CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhc
Confidence 21 234899999999999999999987531 568889999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCC----cceEEEEecCHHHHh-------cC-CC
Q 000916 632 ITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRC----QAGICYHLYSQLRAA-------SL-PD 699 (1225)
Q Consensus 632 ITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~----~~G~CyrLys~~~~~-------~m-~~ 699 (1225)
|||.+|+.||..|= |-|-+...||.||||+. ..|+.|...-.+..+ .+ -.
T Consensus 318 IDiG~vdlVIq~~S------------------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~ 379 (814)
T COG1201 318 IDIGDIDLVIQLGS------------------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGK 379 (814)
T ss_pred cccCCceEEEEeCC------------------cHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCC
Confidence 99999999996553 55677888999999973 346666555111111 11 12
Q ss_pred CCCCcccccChhhHHHHHhhcCC--CCChhh---hhhhcC--CCCcHHHHHHHHHHHHH
Q 000916 700 FQVPEIKRIPIEELCLQVKLLDP--NCNIED---FLQKTL--DPPVSVTIRNAIIVLQD 751 (1225)
Q Consensus 700 ~~~PEI~R~pL~~l~L~~K~l~~--~~~i~~---fL~~~l--dPP~~~av~~Al~~L~~ 751 (1225)
...++|-.-||+-++=|+-.+.. ..++.+ ++..+- .-=+.+...+-+++|..
T Consensus 380 le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 380 LERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYADLSREDFRLVLRYLAG 438 (814)
T ss_pred cccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhccccccCCHHHHHHHHHHHhh
Confidence 23677888888877666544322 112322 222210 01245777888888877
No 56
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.90 E-value=4.8e-22 Score=232.75 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEE
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVY 639 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~ 639 (1225)
.++.+|||+++..+++.+++.|.... ..+.+..+||.++..+|.++. ...|+|||++||+||+|+++ +
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~-----~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~ 338 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQG-----LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-W 338 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhC-----CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-e
Confidence 56789999999999999999997642 125678899999999987765 45799999999999999987 5
Q ss_pred EEeCCCcccccccCCCCcccccccccCHhhHHhhcCccC
Q 000916 640 VIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAG 678 (1225)
Q Consensus 640 VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAG 678 (1225)
||- + +.+.+++.||.||+|
T Consensus 339 vi~---------~-----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 339 LIF---------S-----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEE---------C-----------CCCHHHHhhhcccCC
Confidence 551 1 345679999999998
No 57
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.89 E-value=9.2e-22 Score=246.87 Aligned_cols=423 Identities=24% Similarity=0.280 Sum_probs=274.1
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeec
Q 000916 195 DVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLE 274 (1225)
Q Consensus 195 ~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~e 274 (1225)
..+-..+.++.+++|++|||||||...-..|+...... +.+++++.|.|..|...++... +-+.+|..|+-..+--
T Consensus 38 ~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~--~~~~~GirV~~~TgD~ 113 (766)
T COG1204 38 EAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFS--RLEELGIRVGISTGDY 113 (766)
T ss_pred HHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhh--hHHhcCCEEEEecCCc
Confidence 33444455689999999999999988777777766432 3589999999999999888887 3355666666544322
Q ss_pred ccC---CCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccc-----cccchhHHHHHHHHhCcC
Q 000916 275 SKG---GKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE-----RDRYSDFMLAIIRDMLPS 346 (1225)
Q Consensus 275 s~~---s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE-----R~~~tD~LL~lLk~ll~~ 346 (1225)
... -.++.|+++|+.-+--.+...+ ..+..++.|||||||- |+.-.+.++..++ ..
T Consensus 114 ~~~~~~l~~~~ViVtT~EK~Dsl~R~~~-------------~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~---~~ 177 (766)
T COG1204 114 DLDDERLARYDVIVTTPEKLDSLTRKRP-------------SWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMR---RL 177 (766)
T ss_pred ccchhhhccCCEEEEchHHhhHhhhcCc-------------chhhcccEEEEeeeeecCCcccCceehhHHHHHH---hh
Confidence 212 2578999999998876666554 2788999999999993 6655555554444 45
Q ss_pred CCCceEEEEcccc-cHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhhhhhh
Q 000916 347 YPHLRLILMSATL-DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKSTL 425 (1225)
Q Consensus 347 ~~~LKlILMSATl-d~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 425 (1225)
.+..|+|-+|||+ |.+.|+.|.+.-++ . +.-+||.-+ -.. |
T Consensus 178 ~~~~rivgLSATlpN~~evA~wL~a~~~-~--~~~rp~~l~-~~v--------------------~-------------- 219 (766)
T COG1204 178 NELIRIVGLSATLPNAEEVADWLNAKLV-E--SDWRPVPLR-RGV--------------------P-------------- 219 (766)
T ss_pred CcceEEEEEeeecCCHHHHHHHhCCccc-c--cCCCCcccc-cCC--------------------c--------------
Confidence 6669999999999 99999999986544 2 222333211 000 0
Q ss_pred HHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhcccc
Q 000916 426 DEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQE 505 (1225)
Q Consensus 426 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~ 505 (1225)
|... +....+..+ .|
T Consensus 220 ------------------------------~~~~------~~~~~~~~k-------------------------~~---- 234 (766)
T COG1204 220 ------------------------------YVGA------FLGADGKKK-------------------------TW---- 234 (766)
T ss_pred ------------------------------cceE------EEEecCccc-------------------------cc----
Confidence 0000 000000000 00
Q ss_pred CchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHc--
Q 000916 506 NQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLA-- 583 (1225)
Q Consensus 506 ~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~-- 583 (1225)
+...|...++.++..+ ...|.+|||+++..+....++.|..
T Consensus 235 ----------------------------------~~~~~~~~~~~v~~~~---~~~~qvLvFv~sR~~a~~~A~~l~~~~ 277 (766)
T COG1204 235 ----------------------------------PLLIDNLALELVLESL---AEGGQVLVFVHSRKEAEKTAKKLRIKM 277 (766)
T ss_pred ----------------------------------cccchHHHHHHHHHHH---hcCCeEEEEEecCchHHHHHHHHHHHH
Confidence 0011111122222222 3578999999999998888887762
Q ss_pred -C---------------CCCC-C-----------CCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCC
Q 000916 584 -N---------------PFFR-D-----------TSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITID 635 (1225)
Q Consensus 584 -~---------------~~~~-~-----------~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~ 635 (1225)
. +... . .-..-+-..|++|+.++|.-+-+.|+.|..|||+||.....|+..|
T Consensus 278 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLP 357 (766)
T COG1204 278 SATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLP 357 (766)
T ss_pred hhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCc
Confidence 0 0000 0 0013466789999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc---eEEEEec-CH---HHHhcCCCCCCCccc--
Q 000916 636 DVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA---GICYHLY-SQ---LRAASLPDFQVPEIK-- 706 (1225)
Q Consensus 636 dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~---G~CyrLy-s~---~~~~~m~~~~~PEI~-- 706 (1225)
-=..||- | ...||+..| .+.|++-...|..|||||.+= |..+-+- +. ..+......+.||..
T Consensus 358 A~~VIIk-~---~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s 428 (766)
T COG1204 358 ARTVIIK-D---TRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIES 428 (766)
T ss_pred ceEEEEe-e---eEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHH
Confidence 8777772 2 235887333 458999999999999999542 3333333 22 233344455666651
Q ss_pred ---cc-ChhhHHHHHhhcCCC---CChhhhhhhcCCCCc-------HHHHHHHHHHHHHcC-CCCCCC---ccccccccc
Q 000916 707 ---RI-PIEELCLQVKLLDPN---CNIEDFLQKTLDPPV-------SVTIRNAIIVLQDIG-ALSLDE---KVTELGEKL 768 (1225)
Q Consensus 707 ---R~-pL~~l~L~~K~l~~~---~~i~~fL~~~ldPP~-------~~av~~Al~~L~~lg-ALd~~e---~LT~LG~~L 768 (1225)
+. .+...++.+...+.. .....|+..+.-.|. ...+.++++.|.+.+ .++... .-|++|+.+
T Consensus 429 ~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~ 508 (766)
T COG1204 429 KLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLV 508 (766)
T ss_pred hhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHh
Confidence 11 122233333333221 123445544444443 467888999999986 665443 579999999
Q ss_pred ccccCchhhhHHHHHHhh
Q 000916 769 GCLSVHPLMSKMLFFAIL 786 (1225)
Q Consensus 769 a~LPvdp~lgKmLl~g~~ 786 (1225)
+.+-++|..+|.+.-...
T Consensus 509 s~~yi~~~sa~~~~~~l~ 526 (766)
T COG1204 509 SRLYIDPESAKIFRDLLA 526 (766)
T ss_pred hhccCCHHHHHHHHHHHH
Confidence 999999999998877654
No 58
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2.3e-22 Score=222.90 Aligned_cols=311 Identities=21% Similarity=0.264 Sum_probs=228.3
Q ss_pred HHHHHHHHHHc--CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEE
Q 000916 193 FKDVITSTVDS--NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYK 270 (1225)
Q Consensus 193 ~r~eIl~aI~~--~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~ 270 (1225)
.|+..|..+.. .+.+|-.+..|+|||+.+.+-+|-.....-.....+|.-|+|.+|.+.-+ |-.|+|...+-++-|.
T Consensus 116 IQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~e-Vv~eMGKf~~ita~ya 194 (477)
T KOG0332|consen 116 IQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGE-VVEEMGKFTELTASYA 194 (477)
T ss_pred HHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHH-HHHHhcCceeeeEEEE
Confidence 34445555543 57888899999999999999988775444344578999999999999987 7799999888899999
Q ss_pred Eeeccc-CCC--CccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccc----hhHHHHHHHHh
Q 000916 271 IRLESK-GGK--HSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRY----SDFMLAIIRDM 343 (1225)
Q Consensus 271 IR~es~-~s~--~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~----tD~LL~lLk~l 343 (1225)
||.... .+. ...|++.|+|.++.++..-.. -.+..+.++|+||++- .++ .|--+-+.+.+
T Consensus 195 ir~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~------------id~~kikvfVlDEAD~-Mi~tqG~~D~S~rI~~~l 261 (477)
T KOG0332|consen 195 IRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKC------------IDLEKIKVFVLDEADV-MIDTQGFQDQSIRIMRSL 261 (477)
T ss_pred ecCcccccCCcchhheeeCCCccHHHHHHHHHh------------hChhhceEEEecchhh-hhhcccccccchhhhhhc
Confidence 997622 111 358999999999998876211 2688999999999983 343 34444444432
Q ss_pred CcCCCCceEEEEccccc--HHHHHhhh-CCCCeEecCCc---ccceeEEEehhhHHhhhhccccccccccccCCCCCcch
Q 000916 344 LPSYPHLRLILMSATLD--ADRFSQYF-GGCPVIQVPGF---TYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPEL 417 (1225)
Q Consensus 344 l~~~~~LKlILMSATld--~~~Fs~yF-~~~pvi~I~gr---~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~ 417 (1225)
+ ++.++||+|||.+ ...|+.-+ .++.++.+..+ .++|+.+|+...-+
T Consensus 262 -P--~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~------------------------ 314 (477)
T KOG0332|consen 262 -P--RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACR------------------------ 314 (477)
T ss_pred -C--CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccch------------------------
Confidence 2 5899999999994 56677644 35555554332 35666666532000
Q ss_pred hhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccch
Q 000916 418 TEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRT 497 (1225)
Q Consensus 418 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~ 497 (1225)
.+
T Consensus 315 -----------------~~------------------------------------------------------------- 316 (477)
T KOG0332|consen 315 -----------------DD------------------------------------------------------------- 316 (477)
T ss_pred -----------------hh-------------------------------------------------------------
Confidence 00
Q ss_pred hhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHH
Q 000916 498 ALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKT 577 (1225)
Q Consensus 498 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l 577 (1225)
+ |+.|. .|...-.-|..+||+-+.+....+
T Consensus 317 -----------------------------------K-----------~~~l~----~lyg~~tigqsiIFc~tk~ta~~l 346 (477)
T KOG0332|consen 317 -----------------------------------K-----------YQALV----NLYGLLTIGQSIIFCHTKATAMWL 346 (477)
T ss_pred -----------------------------------H-----------HHHHH----HHHhhhhhhheEEEEeehhhHHHH
Confidence 0 00111 111112347789999999999999
Q ss_pred HHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCc
Q 000916 578 RDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNV 657 (1225)
Q Consensus 578 ~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~ 657 (1225)
++.|.+.+ ..|-.|||.|..++|.++.++|+.|.-||+++||+..+||++.-|..||++.+.-. |+-
T Consensus 347 ~~~m~~~G-------h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~--~~~---- 413 (477)
T KOG0332|consen 347 YEEMRAEG-------HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVK--YTG---- 413 (477)
T ss_pred HHHHHhcC-------ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccc--cCC----
Confidence 99998765 67899999999999999999999999999999999999999999999999877321 211
Q ss_pred ccccccccCHhhHHhhcCccCCCcc-eEEEEecCH
Q 000916 658 STLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQ 691 (1225)
Q Consensus 658 s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~ 691 (1225)
--.-..|.||.||+||.+. |..|.|...
T Consensus 414 ------~pD~etYlHRiGRtGRFGkkG~a~n~v~~ 442 (477)
T KOG0332|consen 414 ------EPDYETYLHRIGRTGRFGKKGLAINLVDD 442 (477)
T ss_pred ------CCCHHHHHHHhcccccccccceEEEeecc
Confidence 1344668899999999876 999998753
No 59
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2e-22 Score=224.36 Aligned_cols=316 Identities=18% Similarity=0.198 Sum_probs=223.4
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHh------ccCCccEEEEecchHHHHHHHHHHHHHH
Q 000916 185 RSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIW------SKGETCKIVCTQPRRISATSVAERISVE 258 (1225)
Q Consensus 185 R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~------~~~~~~~IicTQPRRiaAisvAeRVa~E 258 (1225)
.+--|| |.+.-..+.+++.+|.++.||+|||..+...-+.+.. .......+++.-|||.+|.++---+..+
T Consensus 241 qKPtPI---qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 241 QKPTPI---QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCCcc---hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 345566 4455666788999999999999999865444333322 1234568999999999999998888877
Q ss_pred hCCccCCeEEEEE--eecc--cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchh
Q 000916 259 RGENIGDNIGYKI--RLES--KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSD 334 (1225)
Q Consensus 259 rge~lG~~VGY~I--R~es--~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD 334 (1225)
.-..+-..+=|+- |-|. .......|++||||.|....+.+. -.|+.++++||||++ |.+++.
T Consensus 318 syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~-------------i~l~siTYlVlDEAD-rMLDMg 383 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNV-------------INLASITYLVLDEAD-RMLDMG 383 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCe-------------eeeeeeEEEEecchh-hhhccc
Confidence 6443333333432 2221 234567899999999998887764 389999999999999 999999
Q ss_pred HHHHHHHHhCcCCCCceEEEEccccc--HHHHHh-hhCCCCeEecCCcc-----cceeEEEehhhHHhhhhccccccccc
Q 000916 335 FMLAIIRDMLPSYPHLRLILMSATLD--ADRFSQ-YFGGCPVIQVPGFT-----YPVKSFYLEDVLSILKSAESNHLDSA 406 (1225)
Q Consensus 335 ~LL~lLk~ll~~~~~LKlILMSATld--~~~Fs~-yF~~~pvi~I~gr~-----~pV~~~yLedil~~~~~~~~~~~~~~ 406 (1225)
|--.+-|.+|..|||-++|+.|||.. +..+++ |.. -|++.+-|.. ..|+.+++-.
T Consensus 384 FEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~K-ep~~v~vGsLdL~a~~sVkQ~i~v~---------------- 446 (629)
T KOG0336|consen 384 FEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLK-EPMIVYVGSLDLVAVKSVKQNIIVT---------------- 446 (629)
T ss_pred ccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhh-CceEEEecccceeeeeeeeeeEEec----------------
Confidence 99999999999999999999999993 556665 554 4666555542 2222221100
Q ss_pred cccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccc
Q 000916 407 SLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGA 486 (1225)
Q Consensus 407 ~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~ 486 (1225)
++
T Consensus 447 -----------------------------~d------------------------------------------------- 448 (629)
T KOG0336|consen 447 -----------------------------TD------------------------------------------------- 448 (629)
T ss_pred -----------------------------cc-------------------------------------------------
Confidence 00
Q ss_pred cchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEE
Q 000916 487 DCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILV 566 (1225)
Q Consensus 487 ~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILV 566 (1225)
.+- ++++..++. .......|+|
T Consensus 449 ---------------------~~k----------------------------------~~~~~~f~~---~ms~ndKvIi 470 (629)
T KOG0336|consen 449 ---------------------SEK----------------------------------LEIVQFFVA---NMSSNDKVII 470 (629)
T ss_pred ---------------------HHH----------------------------------HHHHHHHHH---hcCCCceEEE
Confidence 000 001111111 1234568999
Q ss_pred EcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCc
Q 000916 567 FLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRM 646 (1225)
Q Consensus 567 FLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~ 646 (1225)
|+...--...|..-+. ...+..-.|||+-.+.+|...++.+..|..+|+|||++|.+||+|+||++|+++.+
T Consensus 471 Fv~~K~~AD~LSSd~~-------l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDF- 542 (629)
T KOG0336|consen 471 FVSRKVMADHLSSDFC-------LKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDF- 542 (629)
T ss_pred EEechhhhhhccchhh-------hcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCC-
Confidence 9887654333322211 22366778999999999999999999999999999999999999999999998665
Q ss_pred ccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHHHHh
Q 000916 647 KEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLRAA 695 (1225)
Q Consensus 647 Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~~~ 695 (1225)
|-....|.||.||+||.+. |....++++.+..
T Consensus 543 -----------------P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 543 -----------------PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred -----------------CccHHHHHHHhcccccCCCCcceEEEEehhhHH
Confidence 3334577899999999876 9999999986653
No 60
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.89 E-value=9.1e-23 Score=234.53 Aligned_cols=357 Identities=20% Similarity=0.258 Sum_probs=224.0
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHh---------c----cCCccEEEEecchHHHHHHHHHHH
Q 000916 189 PISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIW---------S----KGETCKIVCTQPRRISATSVAERI 255 (1225)
Q Consensus 189 Pi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~---------~----~~~~~~IicTQPRRiaAisvAeRV 255 (1225)
|.--+.-.|-.+|+....|+-.++||||||.++-.+|+++.. . ++...--+|.-|+|..|++|.+.+
T Consensus 204 Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl 283 (731)
T KOG0347|consen 204 PTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHL 283 (731)
T ss_pred CccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHH
Confidence 444444456667777789999999999999999999998332 1 122223678889999999999887
Q ss_pred HHHhCCccCCeEEEEEe------ecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccccc
Q 000916 256 SVERGENIGDNIGYKIR------LESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHER 329 (1225)
Q Consensus 256 a~Erge~lG~~VGY~IR------~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER 329 (1225)
-.- .+..|-.|---+. .+...+....|+++|||.|...+..+.. +-..+++++++||||++ |
T Consensus 284 ~ai-~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~----------~l~~~k~vkcLVlDEaD-R 351 (731)
T KOG0347|consen 284 KAI-AEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNT----------HLGNFKKVKCLVLDEAD-R 351 (731)
T ss_pred HHh-ccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhh----------hhhhhhhceEEEEccHH-H
Confidence 332 1222222211111 1122344678999999999999887642 12478999999999999 5
Q ss_pred ccchh-H--HHHHHHHhC--cCCCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccc
Q 000916 330 DRYSD-F--MLAIIRDML--PSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLD 404 (1225)
Q Consensus 330 ~~~tD-~--LL~lLk~ll--~~~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~ 404 (1225)
.+.-. | |--+|+.+. +.++..+.+++|||+....+...-.. -+ ..
T Consensus 352 mvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~-------~k---~~-------------------- 401 (731)
T KOG0347|consen 352 MVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSS-------RK---KK-------------------- 401 (731)
T ss_pred HhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHh-------hh---cc--------------------
Confidence 55422 2 334455544 24567899999999976554431100 00 00
Q ss_pred cccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhc
Q 000916 405 SASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSL 484 (1225)
Q Consensus 405 ~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~ 484 (1225)
. .+ ... +...+.|++.+.=.+.|.+.|...
T Consensus 402 ---------~---k~---~~~---------~~kiq~Lmk~ig~~~kpkiiD~t~-------------------------- 431 (731)
T KOG0347|consen 402 ---------D---KE---DEL---------NAKIQHLMKKIGFRGKPKIIDLTP-------------------------- 431 (731)
T ss_pred ---------c---hh---hhh---------hHHHHHHHHHhCccCCCeeEecCc--------------------------
Confidence 0 00 000 011222333332223333322110
Q ss_pred cccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeE
Q 000916 485 GADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAI 564 (1225)
Q Consensus 485 g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~I 564 (1225)
+..++..| .+.-..+ ++..-|+.|. |+ -..-+|..
T Consensus 432 ----------------------q~~ta~~l----------------~Es~I~C-~~~eKD~yly-----Yf-l~ryPGrT 466 (731)
T KOG0347|consen 432 ----------------------QSATASTL----------------TESLIEC-PPLEKDLYLY-----YF-LTRYPGRT 466 (731)
T ss_pred ----------------------chhHHHHH----------------HHHhhcC-CccccceeEE-----EE-EeecCCce
Confidence 00111111 1111112 3333333221 11 12358999
Q ss_pred EEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCC
Q 000916 565 LVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSG 644 (1225)
Q Consensus 565 LVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG 644 (1225)
|||+++.+.|.+|.-.|... .+.-+|||++|.+.+|-+-+++|.....-|+|||++|.+||+||+|.+||++-
T Consensus 467 lVF~NsId~vKRLt~~L~~L-------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 467 LVFCNSIDCVKRLTVLLNNL-------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred EEEechHHHHHHHHHHHhhc-------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEee
Confidence 99999999999999888543 25678999999999999998888888888999999999999999999999866
Q ss_pred CcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHHHHhcCCCCCCCcccccChhhHHHHHhhc
Q 000916 645 RMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 720 (1225)
Q Consensus 645 ~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~~~~m~~~~~PEI~R~pL~~l~L~~K~l 720 (1225)
..+ +-..|.||.||+.|... |+..-|+.... +.++-.+|-.+|-.
T Consensus 540 VPr------------------tseiYVHRSGRTARA~~~Gvsvml~~P~e-------------~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 540 VPR------------------TSEIYVHRSGRTARANSEGVSVMLCGPQE-------------VGPLKKLCKTLKKK 585 (731)
T ss_pred cCC------------------ccceeEecccccccccCCCeEEEEeChHH-------------hHHHHHHHHHHhhc
Confidence 533 23446699999999766 99998887533 34566677666544
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.88 E-value=8e-21 Score=219.32 Aligned_cols=434 Identities=18% Similarity=0.281 Sum_probs=294.6
Q ss_pred chhhHHHHHhhc---CCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHH
Q 000916 175 DANLRQIVEERS---KLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSV 251 (1225)
Q Consensus 175 ~~~~~~~~~~R~---~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisv 251 (1225)
.+.++.|++.+. -|||-..- +-.-+.++...+|+..|+||||..--..=+-.... .+.+.+...|--..|.+-
T Consensus 202 pe~fk~~lk~~G~~eLlPVQ~la--Ve~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--~g~KmlfLvPLVALANQK 277 (830)
T COG1202 202 PEKFKRMLKREGIEELLPVQVLA--VEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--GGKKMLFLVPLVALANQK 277 (830)
T ss_pred cHHHHHHHHhcCcceecchhhhh--hhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--CCCeEEEEehhHHhhcch
Confidence 455677777773 57874332 33347788999999999999994322111112222 235899999988888888
Q ss_pred HHHHHHHhCCccCCeEEEEEeec----------ccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEE
Q 000916 252 AERISVERGENIGDNIGYKIRLE----------SKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHI 321 (1225)
Q Consensus 252 AeRVa~Erge~lG~~VGY~IR~e----------s~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shV 321 (1225)
.+-+-... .++|-.|..+|... ...+++..|++.|..=+--.|..+ ..|.++..|
T Consensus 278 y~dF~~rY-s~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--------------~~lgdiGtV 342 (830)
T COG1202 278 YEDFKERY-SKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--------------KDLGDIGTV 342 (830)
T ss_pred HHHHHHHh-hcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--------------CcccccceE
Confidence 77775444 78887776665432 234568899999987666666654 379999999
Q ss_pred Eecccc-----ccccchhHHHHHHHHhCcCCCCceEEEEcccc-cHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhh
Q 000916 322 IVDEIH-----ERDRYSDFMLAIIRDMLPSYPHLRLILMSATL-DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSIL 395 (1225)
Q Consensus 322 IvDEvH-----ER~~~tD~LL~lLk~ll~~~~~LKlILMSATl-d~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~ 395 (1225)
|||||| ||+..-|-|++-||.+ .|+-+.|.+|||+ |++.++++|+ +..+...+|..|++.|.+-.
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~l---~~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~----- 413 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRYL---FPGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFA----- 413 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHHh---CCCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeee-----
Confidence 999999 7999999999999987 5688999999999 9999999997 66677788888887654310
Q ss_pred hhccccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCcc
Q 000916 396 KSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRV 475 (1225)
Q Consensus 396 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~ 475 (1225)
.+ +. +.++-.
T Consensus 414 ---~~------------------e~---------------eK~~ii---------------------------------- 423 (830)
T COG1202 414 ---RN------------------ES---------------EKWDII---------------------------------- 423 (830)
T ss_pred ---cC------------------ch---------------HHHHHH----------------------------------
Confidence 00 00 000000
Q ss_pred chhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHH
Q 000916 476 GDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKI 555 (1225)
Q Consensus 476 ~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I 555 (1225)
..+.+. -....
T Consensus 424 -----------------------------------~~L~k~----------------------------------E~~~~ 434 (830)
T COG1202 424 -----------------------------------ARLVKR----------------------------------EFSTE 434 (830)
T ss_pred -----------------------------------HHHHHH----------------------------------HHhhh
Confidence 000000 00011
Q ss_pred HhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCC
Q 000916 556 CMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITID 635 (1225)
Q Consensus 556 ~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~ 635 (1225)
....-.|..+||-.++.....+.+.|...+ +..-|+|++|+..+++.|-..|..+..-+||.|-....|++.|
T Consensus 435 sskg~rGQtIVFT~SRrr~h~lA~~L~~kG-------~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFP 507 (830)
T COG1202 435 SSKGYRGQTIVFTYSRRRCHELADALTGKG-------LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFP 507 (830)
T ss_pred hccCcCCceEEEecchhhHHHHHHHhhcCC-------cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCc
Confidence 122346999999999999999999997654 6788999999999999999889999999999999999999999
Q ss_pred CeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc---ceEEEEecCH-HHHh-cCCCCC---------
Q 000916 636 DVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ---AGICYHLYSQ-LRAA-SLPDFQ--------- 701 (1225)
Q Consensus 636 dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~---~G~CyrLys~-~~~~-~m~~~~--------- 701 (1225)
.-.+|.+|= .+-..|+|-.++.|+.|||||-. .|..|-|.-. ..|. +|.+..
T Consensus 508 ASQVIFEsL--------------aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~ 573 (830)
T COG1202 508 ASQVIFESL--------------AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLE 573 (830)
T ss_pred hHHHHHHHH--------------HcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhc
Confidence 655444322 24567999999999999999953 4888888644 3343 344321
Q ss_pred -CCcccccC------hhhHHHHHhhcCCC-CChhhhhhhcCCCCcHHHHHHHHHHHHHcCCCCCCC---ccccccccccc
Q 000916 702 -VPEIKRIP------IEELCLQVKLLDPN-CNIEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDE---KVTELGEKLGC 770 (1225)
Q Consensus 702 -~PEI~R~p------L~~l~L~~K~l~~~-~~i~~fL~~~ldPP~~~av~~Al~~L~~lgALd~~e---~LT~LG~~La~ 770 (1225)
.||=.-+. +++ +|..-..... ..|.+.-+..+- ..-....++..|...|.++.++ ++|+.|+..+.
T Consensus 574 s~~e~V~vey~ee~e~e~-vLA~~~v~~s~~~i~~v~~~~~g--~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~ 650 (830)
T COG1202 574 SEPEPVIVEYDEEDEEEN-VLASAGVTNSLSVIERVNSLMLG--AAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAM 650 (830)
T ss_pred CCCCcceeccCcHHHHHH-HHHHhhhcCcHHHHhhcChhhcc--ccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEE
Confidence 22211111 111 2211111000 011111111110 0123578899999999999776 69999999999
Q ss_pred ccCchhhhHHHHHHhhcCChhHHHHHhhccC
Q 000916 771 LSVHPLMSKMLFFAILMDCLDPALTLACASD 801 (1225)
Q Consensus 771 LPvdp~lgKmLl~g~~~~CldpiltIaA~ls 801 (1225)
--+.|+-+-.|..++ ..-.+|. -||+.|.
T Consensus 651 ~Fl~p~~a~~Ir~~v-~~~~~pl-~i~~~l~ 679 (830)
T COG1202 651 SFLGPSEAEFIREGV-LASMDPL-RIAAELE 679 (830)
T ss_pred eecCchHHHHHHHhh-hccCChH-hHhhccc
Confidence 999999999988886 4445564 4555553
No 62
>PRK13766 Hef nuclease; Provisional
Probab=99.87 E-value=4.7e-20 Score=236.82 Aligned_cols=421 Identities=18% Similarity=0.181 Sum_probs=226.4
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeE
Q 000916 188 LPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNI 267 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~V 267 (1225)
+....||.++...+..+ .++|+.+||+|||.+....++.... ....++++..|++..+.+.++++....+.. +..|
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v 89 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIP-EEKI 89 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-CceE
Confidence 44556777787766666 6788999999999876666665543 234689999999999999988886655432 1222
Q ss_pred EEEEeecccC------CCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHH
Q 000916 268 GYKIRLESKG------GKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIR 341 (1225)
Q Consensus 268 GY~IR~es~~------s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk 341 (1225)
+- +..+... -.+..|+|+|++++...+..+. ..+.++++|||||+|.- ........+++
T Consensus 90 ~~-~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~-------------~~~~~~~liVvDEaH~~-~~~~~~~~i~~ 154 (773)
T PRK13766 90 VV-FTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGR-------------ISLEDVSLLIFDEAHRA-VGNYAYVYIAE 154 (773)
T ss_pred EE-EeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCC-------------CChhhCcEEEEECCccc-cccccHHHHHH
Confidence 21 1111111 1245899999999999887653 25789999999999953 33322223444
Q ss_pred HhCcCCCCceEEEEcccc--cHHHHHhhhCC--CCeEecCCccc--------ceeEEEehhhHHhhhhcccccccccccc
Q 000916 342 DMLPSYPHLRLILMSATL--DADRFSQYFGG--CPVIQVPGFTY--------PVKSFYLEDVLSILKSAESNHLDSASLI 409 (1225)
Q Consensus 342 ~ll~~~~~LKlILMSATl--d~~~Fs~yF~~--~pvi~I~gr~~--------pV~~~yLedil~~~~~~~~~~~~~~~~~ 409 (1225)
......+..+++.||||. +.+.+.....+ ...+.+..+.. +.+..|+.-
T Consensus 155 ~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v------------------- 215 (773)
T PRK13766 155 RYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRV------------------- 215 (773)
T ss_pred HHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEe-------------------
Confidence 444455667899999998 33344333322 12222221111 111111100
Q ss_pred CCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccch
Q 000916 410 VPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQ 489 (1225)
Q Consensus 410 ~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~ 489 (1225)
.+++... .+.+++.... +..+......+.. ..+.... ....+... -..+...+.......
T Consensus 216 ------~l~~~~~-~i~~~l~~~~-----~~~l~~l~~~~~~--~~~~~~~-~~~~l~~~-----~~~~~~~l~~~~~~~ 275 (773)
T PRK13766 216 ------ELPEELK-EIRDLLNEAL-----KDRLKKLKELGVI--VSISPDV-SKKELLGL-----QKKLQQEIANDDSEG 275 (773)
T ss_pred ------CCcHHHH-HHHHHHHHHH-----HHHHHHHHHCCCc--ccCCCCc-CHHHHHHH-----HHHHHHHhhcCchHH
Confidence 0000000 0111111000 0000000000000 0000000 00000000 000000000000000
Q ss_pred hhc-------cccchhhhhccccCchhHHHHHHHHhhhhh----hhhH-----HHHHHHhhh--hccCcccccHHHHHHH
Q 000916 490 LKA-------KDGRTALQLGEQENQPEVAQIIKKHMENAL----SDSM-----KQQLLDKYL--ATVNPELIDLVLIEQL 551 (1225)
Q Consensus 490 ~~~-------~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~----~~~~-----~~~ll~~y~--~~~~~~~id~~Li~~l 551 (1225)
... ..-..++.+....+.......+........ ++.. +......|. ..+..+.-..+.+.++
T Consensus 276 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~i 355 (773)
T PRK13766 276 YEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREI 355 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHH
Confidence 000 000000000000111111111110000000 0000 000001110 1122333456677888
Q ss_pred HHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCC--------CCHHHHHHHhcCCCCCCceEEE
Q 000916 552 LRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSM--------VPSVQQKKVFKRPPPGCRKIIL 623 (1225)
Q Consensus 552 l~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~--------l~~~eQ~~vF~~~p~g~rKIIL 623 (1225)
|..+.....++.+|||+...+.+..+.+.|...+ +.+..+||. |+..+|.++++.+..|..+|++
T Consensus 356 l~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~-------~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLv 428 (773)
T PRK13766 356 VKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG-------IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLV 428 (773)
T ss_pred HHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCC-------CceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 8888766788999999999999999999996543 345567665 9999999999999999999999
Q ss_pred ecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCH
Q 000916 624 STNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQ 691 (1225)
Q Consensus 624 ATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~ 691 (1225)
||++++.|++|+++.+||. ||+ +.|...+.||+||+||.++|.+|.|+++
T Consensus 429 aT~~~~eGldi~~~~~VI~--------yd~----------~~s~~r~iQR~GR~gR~~~~~v~~l~~~ 478 (773)
T PRK13766 429 STSVAEEGLDIPSVDLVIF--------YEP----------VPSEIRSIQRKGRTGRQEEGRVVVLIAK 478 (773)
T ss_pred ECChhhcCCCcccCCEEEE--------eCC----------CCCHHHHHHHhcccCcCCCCEEEEEEeC
Confidence 9999999999999999995 554 2356678999999999999999999975
No 63
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.87 E-value=3e-20 Score=225.58 Aligned_cols=429 Identities=19% Similarity=0.221 Sum_probs=223.2
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCC
Q 000916 186 SKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGD 265 (1225)
Q Consensus 186 ~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~ 265 (1225)
..||.-.||.+|.+.-. ++.+||+.|||||||-.---.++++.-. ....+||.+.|+|-...+-..+.. -++.. .
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-~p~~KiVF~aP~~pLv~QQ~a~~~-~~~~~--~ 133 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-RPKGKVVFLAPTRPLVNQQIACFS-IYLIP--Y 133 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-CCcceEEEeeCCchHHHHHHHHHh-hccCc--c
Confidence 57899999999998766 9999999999999996555555555433 344899999999987665553332 22221 1
Q ss_pred eEEEEEeecccCC------CCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHH
Q 000916 266 NIGYKIRLESKGG------KHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAI 339 (1225)
Q Consensus 266 ~VGY~IR~es~~s------~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~l 339 (1225)
++--+...+...+ ...++.|+|+.+|...|.+... +.|+.++++|+||+|.=.-+. .--.+
T Consensus 134 ~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~------------~~ls~fs~iv~DE~Hra~kn~-~Y~~V 200 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH------------DELSDFSLIVFDECHRTSKNH-PYNNI 200 (746)
T ss_pred cceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc------------cccceEEEEEEcccccccccc-cHHHH
Confidence 1111111111111 2568999999999999987632 248999999999999533332 22334
Q ss_pred HHHhCcCCC-CceEEEEcccc--cHHHHHhhhCC-CCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCc
Q 000916 340 IRDMLPSYP-HLRLILMSATL--DADRFSQYFGG-CPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDP 415 (1225)
Q Consensus 340 Lk~ll~~~~-~LKlILMSATl--d~~~Fs~yF~~-~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~ 415 (1225)
++.++...- .-|||.+|||+ +.+...+|-.+ |--+.+..-.-. ..-|.+. + .. ..+|.. -
T Consensus 201 mr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi-~~~y~~l-----r-----~~----~~i~v~-~ 264 (746)
T KOG0354|consen 201 MREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSI-KSNYEEL-----R-----EH----VQIPVD-L 264 (746)
T ss_pred HHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhh-hhhHHHH-----h-----cc----CcccCc-H
Confidence 444443332 33999999999 66777777654 111222111000 1111100 0 00 000100 0
Q ss_pred chhhhh-hhhhHHHHHhhccchhHHHHHHHhhccCCCCccccc----c-------c--ccCCccce--eeccCCccchhh
Q 000916 416 ELTEEN-KSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQ----H-------T--LTGLTPLM--VLAGKGRVGDVC 479 (1225)
Q Consensus 416 ~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~----~-------s--~~g~t~l~--~~a~~~~~~~~~ 479 (1225)
.+.... ...+... ..++++.+..++.....+.. + + .++...-+ |.+-.-+...+.
T Consensus 265 ~~~~~~~~~~f~~~---------i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ 335 (746)
T KOG0354|consen 265 SLCERDIEDPFGMI---------IEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLA 335 (746)
T ss_pred HHhhhhhhhhHHHH---------HHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHH
Confidence 000000 0000000 11222222222222111111 0 0 00000000 000000000011
Q ss_pred hhhhccccchhhccccchhhhhccccCchhHHH-HHHHHhhhhhhhhHHHHHHHhhh--------hccCcc--cccHHHH
Q 000916 480 MLLSLGADCQLKAKDGRTALQLGEQENQPEVAQ-IIKKHMENALSDSMKQQLLDKYL--------ATVNPE--LIDLVLI 548 (1225)
Q Consensus 480 ~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~ll~~y~--------~~~~~~--~id~~Li 548 (1225)
.++..|+.+. .+++-.+.+.....+. .+.... +..++..+. ...++. .-.++.+
T Consensus 336 ll~~~gir~~-------~~l~~~~~f~~e~~~~k~~~~~~--------e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l 400 (746)
T KOG0354|consen 336 LLISDGIRFV-------DALDYLEDFYEEVALKKYLKLEL--------EARLIRNFTENMNELEHLSLDPPKENPKLEKL 400 (746)
T ss_pred HHhhcchhhH-------HHHhhhhhhccccchhHHHHHHh--------cchhhHHHHHHHHhhhhhhcCCCccChhHHHH
Confidence 1122222210 0111111111111100 000000 000111110 111121 2223333
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEec----CCCCHHHHHHHhcCCCCCCceEEEe
Q 000916 549 EQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLH----SMVPSVQQKKVFKRPPPGCRKIILS 624 (1225)
Q Consensus 549 ~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LH----s~l~~~eQ~~vF~~~p~g~rKIILA 624 (1225)
.+.|........+-.++||.-.++.+..+...|.+....+-...+.|-.=+ .+|++.+|+.+.+.|..|..+|+||
T Consensus 401 ~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVA 480 (746)
T KOG0354|consen 401 VEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVA 480 (746)
T ss_pred HHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEE
Confidence 343433334567788999999999999999888741111111111111111 5899999999999999999999999
Q ss_pred cchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCH
Q 000916 625 TNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQ 691 (1225)
Q Consensus 625 TNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~ 691 (1225)
|.|||-|++|+.|..||- ||..++- -...||+|| ||.+.|.|+.|++.
T Consensus 481 TSV~EEGLDI~ec~lVIc--------Yd~~snp----------IrmIQrrGR-gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 481 TSVAEEGLDIGECNLVIC--------YDYSSNP----------IRMVQRRGR-GRARNSKCVLLTTG 528 (746)
T ss_pred ecchhccCCcccccEEEE--------ecCCccH----------HHHHHHhcc-ccccCCeEEEEEcc
Confidence 999999999999999994 6655542 245699999 99999999999995
No 64
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=2.6e-21 Score=210.43 Aligned_cols=308 Identities=20% Similarity=0.251 Sum_probs=221.0
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEee
Q 000916 194 KDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRL 273 (1225)
Q Consensus 194 r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~ 273 (1225)
|++-+.....++.++.-+..|+|||..+..++||....+.....-+|..|+|..|.++++ |+.|++..+|-.|--.+..
T Consensus 112 QeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSq-vc~~lskh~~i~vmvttGG 190 (459)
T KOG0326|consen 112 QEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQ-VCKELSKHLGIKVMVTTGG 190 (459)
T ss_pred cccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHH-HHHHHhcccCeEEEEecCC
Confidence 455555566888888999999999999999999998776667788999999999999986 8888888777544332222
Q ss_pred cc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCC
Q 000916 274 ES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSY 347 (1225)
Q Consensus 274 es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~ 347 (1225)
.+ +.....++++.|||.+|.....+- ..|++.+.+|+||++ .-+.-||--.+-+-+.-..
T Consensus 191 T~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV-------------a~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP 256 (459)
T KOG0326|consen 191 TSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV-------------ADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLP 256 (459)
T ss_pred cccccceeeecCceEEEEcCChhHHHHHhccc-------------ccchhceEEEechhh-hhhchhhhhHHHHHHHhCC
Confidence 22 234556899999999999877653 479999999999999 4577777665555554455
Q ss_pred CCceEEEEcccc--cHHHHHh-hhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhhhhh
Q 000916 348 PHLRLILMSATL--DADRFSQ-YFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKST 424 (1225)
Q Consensus 348 ~~LKlILMSATl--d~~~Fs~-yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 424 (1225)
++-+++|.|||. -+..|-+ |+.+ |-++-..|+. ..
T Consensus 257 ~~rQillySATFP~tVk~Fm~~~l~k-----------Py~INLM~eL-tl------------------------------ 294 (459)
T KOG0326|consen 257 KERQILLYSATFPLTVKGFMDRHLKK-----------PYEINLMEEL-TL------------------------------ 294 (459)
T ss_pred ccceeeEEecccchhHHHHHHHhccC-----------cceeehhhhh-hh------------------------------
Confidence 678999999997 3445543 3322 1111111110 00
Q ss_pred hHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccc
Q 000916 425 LDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQ 504 (1225)
Q Consensus 425 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~ 504 (1225)
.|.|....+ .+
T Consensus 295 ------------------------------------~GvtQyYaf--------------------------------V~- 305 (459)
T KOG0326|consen 295 ------------------------------------KGVTQYYAF--------------------------------VE- 305 (459)
T ss_pred ------------------------------------cchhhheee--------------------------------ec-
Confidence 000000000 00
Q ss_pred cCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcC
Q 000916 505 ENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLAN 584 (1225)
Q Consensus 505 ~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~ 584 (1225)
+.| +-| -+..|..++ .-...+||+++...++-+++++-+.
T Consensus 306 e~q-------Kvh-----------------------------CLntLfskL----qINQsIIFCNS~~rVELLAkKITel 345 (459)
T KOG0326|consen 306 ERQ-------KVH-----------------------------CLNTLFSKL----QINQSIIFCNSTNRVELLAKKITEL 345 (459)
T ss_pred hhh-------hhh-----------------------------hHHHHHHHh----cccceEEEeccchHhHHHHHHHHhc
Confidence 000 000 001111111 1234689999999999999999775
Q ss_pred CCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccc
Q 000916 585 PFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSW 664 (1225)
Q Consensus 585 ~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~w 664 (1225)
+ |..+.+|+.|-++.|.+||..++.|.-+.+|||+..-+||+|+.|.+||+..+.|
T Consensus 346 G-------yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk----------------- 401 (459)
T KOG0326|consen 346 G-------YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK----------------- 401 (459)
T ss_pred c-------chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC-----------------
Confidence 5 6788899999999999999999999999999999999999999999999988744
Q ss_pred cCHhhHHhhcCccCCCcc-eEEEEecCHH
Q 000916 665 VSKASAKQRAGRAGRCQA-GICYHLYSQL 692 (1225)
Q Consensus 665 iSkasa~QR~GRAGR~~~-G~CyrLys~~ 692 (1225)
+-.+|.+|.||+||.+. |..+.|.|-+
T Consensus 402 -~aEtYLHRIGRsGRFGhlGlAInLitye 429 (459)
T KOG0326|consen 402 -NAETYLHRIGRSGRFGHLGLAINLITYE 429 (459)
T ss_pred -CHHHHHHHccCCccCCCcceEEEEEehh
Confidence 34578899999999886 9999999864
No 65
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.84 E-value=2.2e-19 Score=219.39 Aligned_cols=317 Identities=16% Similarity=0.079 Sum_probs=194.3
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeE
Q 000916 188 LPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNI 267 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~V 267 (1225)
.....+|.+.+..+..++..+++++||+|||..... +......+ ..++++|..|++.++.++.+++.+-.... ...+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~-~~~~vLilvpt~eL~~Q~~~~l~~~~~~~-~~~~ 189 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN-YEGKVLIIVPTTSLVTQMIDDFVDYRLFP-REAM 189 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc-CCCeEEEEECcHHHHHHHHHHHHHhcccc-ccce
Confidence 556677888777777777788999999999986543 22222232 23589999999999999999886533211 1122
Q ss_pred EEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCC
Q 000916 268 GYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSY 347 (1225)
Q Consensus 268 GY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~ 347 (1225)
+. +...........|+++|++.|.+... ..+.++++|||||+|.- .. +-+-.+++.+ .
T Consensus 190 ~~-i~~g~~~~~~~~I~VaT~qsl~~~~~----------------~~~~~~~~iIvDEaH~~-~~-~~~~~il~~~---~ 247 (501)
T PHA02558 190 HK-IYSGTAKDTDAPIVVSTWQSAVKQPK----------------EWFDQFGMVIVDECHLF-TG-KSLTSIITKL---D 247 (501)
T ss_pred eE-EecCcccCCCCCEEEeeHHHHhhchh----------------hhccccCEEEEEchhcc-cc-hhHHHHHHhh---h
Confidence 11 11111222356899999999876542 25789999999999953 22 2223333332 1
Q ss_pred CCceEEEEcccccH-H--H--HHhhhCCCCeEec-C-------CcccceeEEEehhhHHhhhhccccccccccccCCCCC
Q 000916 348 PHLRLILMSATLDA-D--R--FSQYFGGCPVIQV-P-------GFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNED 414 (1225)
Q Consensus 348 ~~LKlILMSATld~-~--~--Fs~yF~~~pvi~I-~-------gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~ 414 (1225)
+...++.||||+.- . . +..+||. +... . |...+++...+.- . .+
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~fG~--i~~~v~~~~li~~g~l~~~~~~~v~~-----~-------------~~--- 304 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLFGD--IFKPVTTSQLMEEGQVTDLKINSIFL-----R-------------YP--- 304 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhhCC--ceEEecHHHHHhCCCcCCceEEEEec-----c-------------CC---
Confidence 23468999999932 1 1 3345653 2110 0 1000110000000 0 00
Q ss_pred cchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccc
Q 000916 415 PELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKD 494 (1225)
Q Consensus 415 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~ 494 (1225)
... . .
T Consensus 305 ----~~~--------------------------------------------------------~---------------~ 309 (501)
T PHA02558 305 ----DED--------------------------------------------------------R---------------V 309 (501)
T ss_pred ----HHH--------------------------------------------------------h---------------h
Confidence 000 0 0
Q ss_pred cchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHH
Q 000916 495 GRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDI 574 (1225)
Q Consensus 495 ~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI 574 (1225)
.....++ .+....+.. +.-...+|..++..+. ..++.+|||+...+++
T Consensus 310 ~~~~~~~------~~~~~~l~~------------------------~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~ 357 (501)
T PHA02558 310 KLKGEDY------QEEIKYITS------------------------HTKRNKWIANLALKLA--KKGENTFVMFKYVEHG 357 (501)
T ss_pred hhcccch------HHHHHHHhc------------------------cHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHH
Confidence 0000000 000000000 0001234555555444 2457899999999999
Q ss_pred HHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEec-chhccccCCCCeEEEEeCCCcccccccC
Q 000916 575 NKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILST-NIAETAITIDDVVYVIDSGRMKEKSYDP 653 (1225)
Q Consensus 575 ~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILAT-NIAEtSITI~dV~~VIDsG~~Ke~~yd~ 653 (1225)
+.+.+.|.... +.+..+||.++.++|.++.+.+..|...||||| +++.+|++||+|..||-..-
T Consensus 358 ~~L~~~L~~~g-------~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p-------- 422 (501)
T PHA02558 358 KPLYEMLKKVY-------DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHP-------- 422 (501)
T ss_pred HHHHHHHHHcC-------CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecC--------
Confidence 99999998643 468999999999999999888888998999998 99999999999999994222
Q ss_pred CCCcccccccccCHhhHHhhcCccCCCcceE
Q 000916 654 YNNVSTLQSSWVSKASAKQRAGRAGRCQAGI 684 (1225)
Q Consensus 654 ~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~ 684 (1225)
.-|+..+.||.||+||..+|.
T Consensus 423 ----------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 423 ----------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ----------CcchhhhhhhhhccccCCCCC
Confidence 236678899999999988753
No 66
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=230.20 Aligned_cols=327 Identities=21% Similarity=0.217 Sum_probs=223.6
Q ss_pred HhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCc
Q 000916 183 EERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGEN 262 (1225)
Q Consensus 183 ~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~ 262 (1225)
..|.....|.||.+.++.+.+++.|||+.+||||||..+-.+|+|++..... .+.++.-|++.+|..-++|+.+... .
T Consensus 64 ~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~-a~AL~lYPtnALa~DQ~~rl~~~~~-~ 141 (851)
T COG1205 64 VKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS-ARALLLYPTNALANDQAERLRELIS-D 141 (851)
T ss_pred HHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC-ccEEEEechhhhHhhHHHHHHHHHH-h
Confidence 3444455999999999999999999999999999999999999999876544 4789999999999999999977654 3
Q ss_pred cCCeEEEEEe-----eccc---CCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccc-cccch
Q 000916 263 IGDNIGYKIR-----LESK---GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE-RDRYS 333 (1225)
Q Consensus 263 lG~~VGY~IR-----~es~---~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE-R~~~t 333 (1225)
+|..|+..+- .+.+ .....+|+++||-||-.+|+... ..+...++++.+|||||+|- |+++.
T Consensus 142 ~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~---------~~~~~~~~~Lk~lVvDElHtYrGv~G 212 (851)
T COG1205 142 LPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNH---------DAWLWLLRNLKYLVVDELHTYRGVQG 212 (851)
T ss_pred CCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCc---------chHHHHHhcCcEEEEecceeccccch
Confidence 4444444331 1111 24567899999999998777542 12234688899999999997 77765
Q ss_pred hHHHHHHHHhCc---CC-CCceEEEEcccc-cHHHHHh-hhCCCCeEe-cCCcccce--eEEEehhhHHhhhhccccccc
Q 000916 334 DFMLAIIRDMLP---SY-PHLRLILMSATL-DADRFSQ-YFGGCPVIQ-VPGFTYPV--KSFYLEDVLSILKSAESNHLD 404 (1225)
Q Consensus 334 D~LL~lLk~ll~---~~-~~LKlILMSATl-d~~~Fs~-yF~~~pvi~-I~gr~~pV--~~~yLedil~~~~~~~~~~~~ 404 (1225)
--+-.++|+++. .. .++++|.+|||+ |...|.. +|+ .+.-. |.+...|- +.+.+.+. +.
T Consensus 213 S~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~-~~f~~~v~~~g~~~~~~~~~~~~p-------~~---- 280 (851)
T COG1205 213 SEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFG-RDFEVPVDEDGSPRGLRYFVRREP-------PI---- 280 (851)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcC-CcceeeccCCCCCCCceEEEEeCC-------cc----
Confidence 545555555543 33 379999999999 7777665 554 22222 33322221 12211110 00
Q ss_pred cccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhc
Q 000916 405 SASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSL 484 (1225)
Q Consensus 405 ~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~ 484 (1225)
. ...+ .+ .+
T Consensus 281 ------~----~~~~--------~~---------------------------r~-------------------------- 289 (851)
T COG1205 281 ------R----ELAE--------SI---------------------------RR-------------------------- 289 (851)
T ss_pred ------h----hhhh--------hc---------------------------cc--------------------------
Confidence 0 0000 00 00
Q ss_pred cccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeE
Q 000916 485 GADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAI 564 (1225)
Q Consensus 485 g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~I 564 (1225)
....+... ++..++ ..+=..
T Consensus 290 --------------------s~~~~~~~----------------------------------~~~~~~------~~~~~t 309 (851)
T COG1205 290 --------------------SALAELAT----------------------------------LAALLV------RNGIQT 309 (851)
T ss_pred --------------------chHHHHHH----------------------------------HHHHHH------HcCceE
Confidence 00000000 111111 134578
Q ss_pred EEEcCCHHHHHHHHHHHHcCC-CCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeC
Q 000916 565 LVFLPGWEDINKTRDRLLANP-FFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDS 643 (1225)
Q Consensus 565 LVFLpG~~eI~~l~~~L~~~~-~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDs 643 (1225)
|||.-+...++.+.......- ..+...-..|...|++|..++++++...+..|.-++++|||.+|-+|+|.++..||-+
T Consensus 310 L~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~ 389 (851)
T COG1205 310 LVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAY 389 (851)
T ss_pred EEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhc
Confidence 999999998888752221110 0011112458889999999999999999999999999999999999999999999998
Q ss_pred CCcccccccCCCCccccccccc-CHhhHHhhcCccCCCc
Q 000916 644 GRMKEKSYDPYNNVSTLQSSWV-SKASAKQRAGRAGRCQ 681 (1225)
Q Consensus 644 G~~Ke~~yd~~~~~s~L~~~wi-Skasa~QR~GRAGR~~ 681 (1225)
|+ |. |.+++.||.|||||..
T Consensus 390 g~------------------P~~s~~~~~Q~~GRaGR~~ 410 (851)
T COG1205 390 GY------------------PGVSVLSFRQRAGRAGRRG 410 (851)
T ss_pred CC------------------CCchHHHHHHhhhhccCCC
Confidence 87 55 8899999999999976
No 67
>PRK09694 helicase Cas3; Provisional
Probab=99.83 E-value=5.2e-19 Score=224.28 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHH----HHHhcCC-CCCC---ceEEEecchhccc
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQ----KKVFKRP-PPGC---RKIILSTNIAETA 631 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ----~~vF~~~-p~g~---rKIILATNIAEtS 631 (1225)
.++.+|||+++.+++..+++.|.+.. ...+.+..|||.++..+| +++++.+ +.|. ++|||||+|+|.|
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~----~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~G 634 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELN----NTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQS 634 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhC----CCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhe
Confidence 46789999999999999999998542 123579999999999988 4566555 4555 4799999999999
Q ss_pred cCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc
Q 000916 632 ITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ 681 (1225)
Q Consensus 632 ITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~ 681 (1225)
||| |+.+||.. -...+++.||+||+||..
T Consensus 635 LDI-d~DvlItd--------------------laPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 635 LDL-DFDWLITQ--------------------LCPVDLLFQRLGRLHRHH 663 (878)
T ss_pred eec-CCCeEEEC--------------------CCCHHHHHHHHhccCCCC
Confidence 999 57888731 123478999999999964
No 68
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=2.4e-19 Score=205.15 Aligned_cols=307 Identities=21% Similarity=0.301 Sum_probs=202.0
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHhccCC-ccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecc-------
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIWSKGE-TCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLES------- 275 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~-~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es------- 275 (1225)
.+.|.|.++||||||..+..+|+.....+.. ..+.+|.-|+|..|.+|+.-+ .++....|-.|+--....+
T Consensus 183 ~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f-~~~~~~tgL~V~~~sgq~sl~~E~~q 261 (620)
T KOG0350|consen 183 PRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTF-KRLNSGTGLAVCSLSGQNSLEDEARQ 261 (620)
T ss_pred CCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHH-HHhccCCceEEEecccccchHHHHHH
Confidence 5678999999999999999999988776533 357889999999999999844 5555556666664332221
Q ss_pred --cCCC--CccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccch------hHHHHHHH----
Q 000916 276 --KGGK--HSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYS------DFMLAIIR---- 341 (1225)
Q Consensus 276 --~~s~--~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~t------D~LL~lLk---- 341 (1225)
...+ ...|+++|||.|..+|.+... ..|+++.++||||++ |-++- |.++..++
T Consensus 262 L~~~~~~~~~DIlVaTPGRLVDHl~~~k~------------f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl~~v~~~~~~~k~ 328 (620)
T KOG0350|consen 262 LASDPPECRIDILVATPGRLVDHLNNTKS------------FDLKHLRFLVIDEAD-RLLDQSFQEWLDTVMSLCKTMKR 328 (620)
T ss_pred HhcCCCccccceEEcCchHHHHhccCCCC------------cchhhceEEEechHH-HHHHHHHHHHHHHHHHHhCCchh
Confidence 1111 348999999999999986532 489999999999999 43321 12222221
Q ss_pred -----HhCc-------------------CCCCceEEEEcccc--cHHHHHhhhCCCC-eEecCCcccceeEEEehhhHHh
Q 000916 342 -----DMLP-------------------SYPHLRLILMSATL--DADRFSQYFGGCP-VIQVPGFTYPVKSFYLEDVLSI 394 (1225)
Q Consensus 342 -----~ll~-------------------~~~~LKlILMSATl--d~~~Fs~yF~~~p-vi~I~gr~~pV~~~yLedil~~ 394 (1225)
.+++ .+|+|.-+++|||+ |+.++.++=-+-| +.++.+. .-..|
T Consensus 329 ~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~---~~~ry------- 398 (620)
T KOG0350|consen 329 VACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP---LIGRY------- 398 (620)
T ss_pred hcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc---cceee-------
Confidence 1111 13444455677777 6666666533333 3332211 00000
Q ss_pred hhhccccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCc
Q 000916 395 LKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGR 474 (1225)
Q Consensus 395 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~ 474 (1225)
++|. .+. |. .+.
T Consensus 399 --------------slp~---~l~---------------------------------------~~-------~vv----- 410 (620)
T KOG0350|consen 399 --------------SLPS---SLS---------------------------------------HR-------LVV----- 410 (620)
T ss_pred --------------ecCh---hhh---------------------------------------hc-------eee-----
Confidence 0010 000 00 000
Q ss_pred cchhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHH
Q 000916 475 VGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRK 554 (1225)
Q Consensus 475 ~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~ 554 (1225)
..+ .+..-.+.++|
T Consensus 411 ---------------------------------------------------------------~~~-~~kpl~~~~lI-- 424 (620)
T KOG0350|consen 411 ---------------------------------------------------------------TEP-KFKPLAVYALI-- 424 (620)
T ss_pred ---------------------------------------------------------------ccc-ccchHhHHHHH--
Confidence 000 00000111122
Q ss_pred HHhcCCCCeEEEEcCCHHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccC
Q 000916 555 ICMDSEDGAILVFLPGWEDINKTRDRLL-ANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAIT 633 (1225)
Q Consensus 555 I~~~~~~G~ILVFLpG~~eI~~l~~~L~-~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSIT 633 (1225)
....-..+|+|..+.+...++...|. ... ...+.+-.+-|++....+.+....+..|...|+|||++..+||+
T Consensus 425 --~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~----~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiD 498 (620)
T KOG0350|consen 425 --TSNKLNRTLCFVNSVSSANRLAHVLKVEFC----SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGID 498 (620)
T ss_pred --HHhhcceEEEEecchHHHHHHHHHHHHHhc----cccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCc
Confidence 12345689999999999999998886 211 12244445789999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHH
Q 000916 634 IDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQL 692 (1225)
Q Consensus 634 I~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~ 692 (1225)
|.||..||+ ||+ |.|--.|.||+||++|.+. |.||.|.++.
T Consensus 499 v~~v~~VIN--------Yd~----------P~~~ktyVHR~GRTARAgq~G~a~tll~~~ 540 (620)
T KOG0350|consen 499 VNDVDNVIN--------YDP----------PASDKTYVHRAGRTARAGQDGYAITLLDKH 540 (620)
T ss_pred ccccceEee--------cCC----------CchhhHHHHhhcccccccCCceEEEeeccc
Confidence 999999997 554 4555678899999999766 9999998864
No 69
>PRK09401 reverse gyrase; Reviewed
Probab=99.82 E-value=1.2e-18 Score=227.77 Aligned_cols=130 Identities=17% Similarity=0.181 Sum_probs=91.3
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHh
Q 000916 180 QIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVER 259 (1225)
Q Consensus 180 ~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Er 259 (1225)
++.+..-....+..|.+.+..+..++.++++++||+|||+ +.+.+...... ...++++..|+|.+|.++++++. .+
T Consensus 71 ~~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~-~l 146 (1176)
T PRK09401 71 KFFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLE-KF 146 (1176)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHH-HH
Confidence 3444444456788999999999999999999999999997 33333333222 24689999999999999999874 45
Q ss_pred CCccCCeEEEEEeecc-----------c-CCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccc
Q 000916 260 GENIGDNIGYKIRLES-----------K-GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH 327 (1225)
Q Consensus 260 ge~lG~~VGY~IR~es-----------~-~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvH 327 (1225)
+...|..+.......+ . .....+|+++|+|.|.+.+.. -.+..+++|||||||
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---------------l~~~~~~~lVvDEaD 211 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE---------------LPKKKFDFVFVDDVD 211 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh---------------ccccccCEEEEEChH
Confidence 5555543322221111 0 123468999999999988752 145679999999999
Q ss_pred c
Q 000916 328 E 328 (1225)
Q Consensus 328 E 328 (1225)
.
T Consensus 212 ~ 212 (1176)
T PRK09401 212 A 212 (1176)
T ss_pred H
Confidence 5
No 70
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.81 E-value=3e-19 Score=220.49 Aligned_cols=319 Identities=19% Similarity=0.261 Sum_probs=220.0
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHh-----ccCCccEEEEecchHHHHHHHHHHHHHHhCCcc
Q 000916 189 PISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIW-----SKGETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 189 Pi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~-----~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
+....|.+.+.+|.+++.||..|.||||||-.+-++++-+.. ..+.+.--++.-|+|..|.++-+-|..-. +.+
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~-k~l 465 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFL-KLL 465 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHH-hhc
Confidence 444557788999999999999999999999988666664432 12334455677799999999988775543 334
Q ss_pred CCeE--EEE-Eeecc---cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHH
Q 000916 264 GDNI--GYK-IRLES---KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFML 337 (1225)
Q Consensus 264 G~~V--GY~-IR~es---~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL 337 (1225)
|..+ -|+ ++... ...+.+-|++||+|+.+..|..... .+ ..|..+++||+||++ |..+.-|.-
T Consensus 466 ~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~g---------rv-tnlrR~t~lv~deaD-rmfdmgfeP 534 (997)
T KOG0334|consen 466 GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSG---------RV-TNLRRVTYLVLDEAD-RMFDMGFEP 534 (997)
T ss_pred CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCC---------cc-ccccccceeeechhh-hhheeccCc
Confidence 4321 111 11111 1234689999999999998875422 11 478889999999999 777777766
Q ss_pred HHHHHhCcCCCCceEEEEccccc--HHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCc
Q 000916 338 AIIRDMLPSYPHLRLILMSATLD--ADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDP 415 (1225)
Q Consensus 338 ~lLk~ll~~~~~LKlILMSATld--~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~ 415 (1225)
.+.+.+-..+|+.+.|++|||.. .+.++.---.- ||++.+.-. .
T Consensus 535 q~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~----------Pveiiv~~~------------------------s 580 (997)
T KOG0334|consen 535 QITRILQNLRPDRQTVLFSATFPRSMEALARKVLKK----------PVEIIVGGR------------------------S 580 (997)
T ss_pred ccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcC----------CeeEEEccc------------------------e
Confidence 55564445589999999999984 33344321112 232211100 0
Q ss_pred chhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhcccc
Q 000916 416 ELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDG 495 (1225)
Q Consensus 416 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~ 495 (1225)
.++++... -+.+++
T Consensus 581 vV~k~V~q-----------------------------------------~v~V~~------------------------- 594 (997)
T KOG0334|consen 581 VVCKEVTQ-----------------------------------------VVRVCA------------------------- 594 (997)
T ss_pred eEeccceE-----------------------------------------EEEEec-------------------------
Confidence 00000000 000000
Q ss_pred chhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHH
Q 000916 496 RTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDIN 575 (1225)
Q Consensus 496 ~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~ 575 (1225)
+..+.+.+|+..|......|+++||+...+.+.
T Consensus 595 -----------------------------------------------~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d 627 (997)
T KOG0334|consen 595 -----------------------------------------------IENEKFLKLLELLGERYEDGKTIIFVDKQEKAD 627 (997)
T ss_pred -----------------------------------------------CchHHHHHHHHHHHHHhhcCCEEEEEcCchHHH
Confidence 001122333444444445899999999999999
Q ss_pred HHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCC
Q 000916 576 KTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYN 655 (1225)
Q Consensus 576 ~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~ 655 (1225)
.|.+.|...+ +....|||+.++.++..+.+.++.|+.+++|||.++.+|+++.++-.||+ ||..+
T Consensus 628 ~l~~~L~~ag-------~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn--------yd~pn 692 (997)
T KOG0334|consen 628 ALLRDLQKAG-------YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN--------YDFPN 692 (997)
T ss_pred HHHHHHHhcC-------cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE--------cccch
Confidence 9999998654 55666999999999999999999999999999999999999999999997 55455
Q ss_pred CcccccccccCHhhHHhhcCccCCCcc-eEEEEecCH
Q 000916 656 NVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQ 691 (1225)
Q Consensus 656 ~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~ 691 (1225)
++. .|.+|.||+||+++ |.||.+.+.
T Consensus 693 h~e----------dyvhR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 693 HYE----------DYVHRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred hHH----------HHHHHhcccccCCccceeEEEeCh
Confidence 443 37899999999988 999999886
No 71
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.3e-18 Score=196.42 Aligned_cols=304 Identities=22% Similarity=0.255 Sum_probs=206.6
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhcc------CCccEEEEecchHHHHHHHHHHHHHHhCCccCCe
Q 000916 193 FKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK------GETCKIVCTQPRRISATSVAERISVERGENIGDN 266 (1225)
Q Consensus 193 ~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~------~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~ 266 (1225)
.|+..|..+.+++.|+..+.||||||..+-.++++..+.. ......++..|+|..|.++..-+.+ + -..
T Consensus 45 IQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viek-L----~~~ 119 (569)
T KOG0346|consen 45 IQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEK-L----VEY 119 (569)
T ss_pred hhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHH-H----HHH
Confidence 3556677777888999999999999999999998887631 2345778899999999999876532 1 112
Q ss_pred EEEEEeeccc------------CCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchh
Q 000916 267 IGYKIRLESK------------GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSD 334 (1225)
Q Consensus 267 VGY~IR~es~------------~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD 334 (1225)
++-.+|.-+- ......|++.|||.||+++..+.+ ..+..++.+|||||+
T Consensus 120 c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~------------~~~~~l~~LVvDEAD------- 180 (569)
T KOG0346|consen 120 CSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL------------EYLDSLSFLVVDEAD------- 180 (569)
T ss_pred HHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccc------------hhhhheeeEEechhh-------
Confidence 2222332211 123568999999999999998853 378999999999996
Q ss_pred HHHHH-----HHHhCcCC-CCceEEEEcccc--cHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccc
Q 000916 335 FMLAI-----IRDMLPSY-PHLRLILMSATL--DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSA 406 (1225)
Q Consensus 335 ~LL~l-----Lk~ll~~~-~~LKlILMSATl--d~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~ 406 (1225)
+||.. |+.+...- +..+-+|||||+ |+..+.+.|-.-|+|- .+-|+-
T Consensus 181 LllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviL----------kl~e~e--------------- 235 (569)
T KOG0346|consen 181 LLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVIL----------KLTEGE--------------- 235 (569)
T ss_pred hhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEE----------Eecccc---------------
Confidence 45443 44443333 467999999999 7888999887656541 111110
Q ss_pred cccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccc
Q 000916 407 SLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGA 486 (1225)
Q Consensus 407 ~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~ 486 (1225)
+|.. ..+-.|+ +.++
T Consensus 236 ---l~~~-------------------------------------dqL~Qy~----------v~cs--------------- 250 (569)
T KOG0346|consen 236 ---LPNP-------------------------------------DQLTQYQ----------VKCS--------------- 250 (569)
T ss_pred ---CCCc-------------------------------------ccceEEE----------EEec---------------
Confidence 0000 0000010 0000
Q ss_pred cchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEE
Q 000916 487 DCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILV 566 (1225)
Q Consensus 487 ~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILV 566 (1225)
.+. .+-++..++. + .--.|.+||
T Consensus 251 -------------------e~D-----------------------------------KflllyallK-L--~LI~gKsli 273 (569)
T KOG0346|consen 251 -------------------EED-----------------------------------KFLLLYALLK-L--RLIRGKSLI 273 (569)
T ss_pred -------------------cch-----------------------------------hHHHHHHHHH-H--HHhcCceEE
Confidence 000 0001111111 0 113599999
Q ss_pred EcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecch-------------------
Q 000916 567 FLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNI------------------- 627 (1225)
Q Consensus 567 FLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNI------------------- 627 (1225)
|+++.+-.-++.-.|++-+ +.-+.|.|.||..-|.-|.+.+..|...||+||+.
T Consensus 274 FVNtIdr~YrLkLfLeqFG-------iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~ 346 (569)
T KOG0346|consen 274 FVNTIDRCYRLKLFLEQFG-------IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKN 346 (569)
T ss_pred EEechhhhHHHHHHHHHhC-------cHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccC
Confidence 9999888888877776533 45667899999999999999999999999999991
Q ss_pred ----------------hccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecC
Q 000916 628 ----------------AETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYS 690 (1225)
Q Consensus 628 ----------------AEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys 690 (1225)
+.+||+...|..|||..+ |-+-.+|.||.||++|... |....+.+
T Consensus 347 ~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~------------------P~t~~sYIHRvGRTaRg~n~GtalSfv~ 408 (569)
T KOG0346|consen 347 PKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF------------------PETVTSYIHRVGRTARGNNKGTALSFVS 408 (569)
T ss_pred CCCccccccccCchhchhccccchheeeeeecCC------------------CCchHHHHHhccccccCCCCCceEEEec
Confidence 235699999999998776 5566789999999999765 99888876
Q ss_pred HH
Q 000916 691 QL 692 (1225)
Q Consensus 691 ~~ 692 (1225)
..
T Consensus 409 P~ 410 (569)
T KOG0346|consen 409 PK 410 (569)
T ss_pred ch
Confidence 53
No 72
>PRK14701 reverse gyrase; Provisional
Probab=99.78 E-value=1.2e-17 Score=222.88 Aligned_cols=114 Identities=15% Similarity=0.033 Sum_probs=86.6
Q ss_pred CeEEEEcCCHHHH---HHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEec----chhccccCC
Q 000916 562 GAILVFLPGWEDI---NKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILST----NIAETAITI 634 (1225)
Q Consensus 562 G~ILVFLpG~~eI---~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILAT----NIAEtSITI 634 (1225)
...|||+++...+ +.+.+.|...+ +.+.++||+ +.++++.|..|...|+||| ++|.+||+|
T Consensus 331 ~~gIVF~~t~~~~e~ae~la~~L~~~G-------i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDi 398 (1638)
T PRK14701 331 KGGLIFVPIDEGAEKAEEIEKYLLEDG-------FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDL 398 (1638)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHCC-------CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCcc
Confidence 4679999987754 78888887654 789999984 7788899999999999999 699999999
Q ss_pred CC-eEEEEeCCCccccc----ccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHH
Q 000916 635 DD-VVYVIDSGRMKEKS----YDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLR 693 (1225)
Q Consensus 635 ~d-V~~VIDsG~~Ke~~----yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~ 693 (1225)
|+ |+|||..|.+|.+. |...... .|. .-.+.++.|||||.+ |+.|+-.|....
T Consensus 399 P~~Vryvi~~~~Pk~~~~~e~~~~~~~~-----~~~-~~~~~~~~~~a~~~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 399 PERIRFAVFYGVPKFRFRVDLEDPTIYR-----ILG-LLSEILKIEEELKEGIPIEGVLDVFPED 457 (1638)
T ss_pred CCccCEEEEeCCCCCCcchhhcccchhh-----hhc-chHHHHHhhhhcccCCcchhHHHhHHHH
Confidence 99 99999999998442 3332211 111 234567789999876 578876555443
No 73
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.78 E-value=4.1e-19 Score=196.97 Aligned_cols=303 Identities=22% Similarity=0.267 Sum_probs=199.0
Q ss_pred HHHHHcCCeEEEEccCCCchhchHHH----HHHHHHh----ccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEE
Q 000916 198 TSTVDSNQVVLISGETGCGKTTQVPQ----FLLEHIW----SKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGY 269 (1225)
Q Consensus 198 l~aI~~~~VvII~GeTGsGKTTQvPq----~ILe~~~----~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY 269 (1225)
+..+.+++..|-.+-||||||..+.. |.||..+ .++...--++..|.|..|.+..+-| .++...++ ..||
T Consensus 201 lPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~ii-e~~~~~L~-e~g~ 278 (610)
T KOG0341|consen 201 LPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDII-EQYVAALQ-EAGY 278 (610)
T ss_pred cceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHH-HHHHHHHH-hcCC
Confidence 44456778888889999999975433 3344432 3444444455569999999987744 22221111 1111
Q ss_pred -------EEeec------ccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHH
Q 000916 270 -------KIRLE------SKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFM 336 (1225)
Q Consensus 270 -------~IR~e------s~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~L 336 (1225)
.|..- ..+....+|+++|||.|..+|...-. .|.-..++.+||++ |.+++.|-
T Consensus 279 P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~-------------sLd~CRyL~lDEAD-RmiDmGFE 344 (610)
T KOG0341|consen 279 PELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIM-------------SLDACRYLTLDEAD-RMIDMGFE 344 (610)
T ss_pred hhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhc-------------cHHHHHHhhhhhHH-HHhhccch
Confidence 11111 12345679999999999999987643 67788899999998 77877663
Q ss_pred HHHHHHhCcCC-CCceEEEEccccc--HHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCC
Q 000916 337 LAIIRDMLPSY-PHLRLILMSATLD--ADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNE 413 (1225)
Q Consensus 337 L~lLk~ll~~~-~~LKlILMSATld--~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~ 413 (1225)
- -+|.+...+ ..-+.+|+||||. ...|++--- .-||.+.. +.
T Consensus 345 d-dir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSAL----------VKPvtvNV--------GR---------------- 389 (610)
T KOG0341|consen 345 D-DIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSAL----------VKPVTVNV--------GR---------------- 389 (610)
T ss_pred h-hHHHHHHHHhhhhheeeeeccccHHHHHHHHhhc----------ccceEEec--------cc----------------
Confidence 2 233333222 2458899999994 344443111 12332210 00
Q ss_pred CcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhcc
Q 000916 414 DPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAK 493 (1225)
Q Consensus 414 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~ 493 (1225)
||...
T Consensus 390 --------------------------------------------------------AGAAs------------------- 394 (610)
T KOG0341|consen 390 --------------------------------------------------------AGAAS------------------- 394 (610)
T ss_pred --------------------------------------------------------ccccc-------------------
Confidence 00000
Q ss_pred ccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHH
Q 000916 494 DGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWED 573 (1225)
Q Consensus 494 ~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~e 573 (1225)
.+++... +|.+.- ..|.-+|. |.....-+||||.--..|
T Consensus 395 -----------------ldViQev---------------EyVkqE-------aKiVylLe--CLQKT~PpVLIFaEkK~D 433 (610)
T KOG0341|consen 395 -----------------LDVIQEV---------------EYVKQE-------AKIVYLLE--CLQKTSPPVLIFAEKKAD 433 (610)
T ss_pred -----------------hhHHHHH---------------HHHHhh-------hhhhhHHH--HhccCCCceEEEeccccC
Confidence 0000000 010000 01222232 333456789999999999
Q ss_pred HHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccC
Q 000916 574 INKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDP 653 (1225)
Q Consensus 574 I~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~ 653 (1225)
+..+.+.|.-.+ +.+..+||+-+++++....+.++.|+..|+|||++|..|++.|||.+|||+..
T Consensus 434 VD~IhEYLLlKG-------VEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDM-------- 498 (610)
T KOG0341|consen 434 VDDIHEYLLLKG-------VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDM-------- 498 (610)
T ss_pred hHHHHHHHHHcc-------ceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCC--------
Confidence 999999887543 78999999999999999999999999999999999999999999999998666
Q ss_pred CCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHH
Q 000916 654 YNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQL 692 (1225)
Q Consensus 654 ~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~ 692 (1225)
|-...||.+|.||+||++. |+.-.+..+.
T Consensus 499 ----------P~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 499 ----------PEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred ----------hHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 4455789999999999987 9988887764
No 74
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.78 E-value=2.5e-17 Score=215.78 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=68.5
Q ss_pred CeEEEEcCCH---HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEe----cchhccccCC
Q 000916 562 GAILVFLPGW---EDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILS----TNIAETAITI 634 (1225)
Q Consensus 562 G~ILVFLpG~---~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILA----TNIAEtSITI 634 (1225)
+..|||+++. +.++.+.+.|...+ +.+..+||.|+. ++++.|..|..+|+|| ||+|.+||+|
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g-------~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDi 395 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHG-------VKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDL 395 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCC-------ceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCC
Confidence 4579999988 99999999997653 788999999973 5788889999999999 5999999999
Q ss_pred CC-eEEEEeCCCccccc
Q 000916 635 DD-VVYVIDSGRMKEKS 650 (1225)
Q Consensus 635 ~d-V~~VIDsG~~Ke~~ 650 (1225)
|+ |+|||++|.+|.+.
T Consensus 396 p~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 396 PERVRYAVFLGVPKFKV 412 (1171)
T ss_pred CccccEEEEECCCCEEE
Confidence 99 89999999988653
No 75
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=5.9e-18 Score=190.10 Aligned_cols=315 Identities=18% Similarity=0.278 Sum_probs=216.5
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeE
Q 000916 188 LPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNI 267 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~V 267 (1225)
-|-.-+|..|+..| .+..+++.+.+|+|||-.+-..++..+......+.+++..|+|..|.++.+ |....|...+-.|
T Consensus 48 kPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~-v~~~lg~~~~~~v 125 (397)
T KOG0327|consen 48 KPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQK-VVRALGDHMDVSV 125 (397)
T ss_pred CchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHH-HHHhhhcccceee
Confidence 34444444444444 557788999999999999888888776555567889999999999999984 5555555444333
Q ss_pred EEEEeecc------cCC-CCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccccccc--chhHHHH
Q 000916 268 GYKIRLES------KGG-KHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDR--YSDFMLA 338 (1225)
Q Consensus 268 GY~IR~es------~~s-~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~--~tD~LL~ 338 (1225)
--.+++.+ ... ....|++.|||..+.+|....+ ...++..+|+||++|+-. .-|.+-.
T Consensus 126 ~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l-------------~~~~iKmfvlDEaDEmLs~gfkdqI~~ 192 (397)
T KOG0327|consen 126 HACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSL-------------STDGIKMFVLDEADEMLSRGFKDQIYD 192 (397)
T ss_pred eeecCcccchhhhhhhhccCceeecCCchhHHHhhccccc-------------cccceeEEeecchHhhhccchHHHHHH
Confidence 22222222 122 2468999999999999976642 677899999999998522 2233444
Q ss_pred HHHHhCcCCCCceEEEEccccc--HHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcc
Q 000916 339 IIRDMLPSYPHLRLILMSATLD--ADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPE 416 (1225)
Q Consensus 339 lLk~ll~~~~~LKlILMSATld--~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~ 416 (1225)
+.+. ..++.+++|.|||+. ....++-|..-| |.+.-=.|-
T Consensus 193 if~~---lp~~vQv~l~SAT~p~~vl~vt~~f~~~p----------v~i~vkk~~------------------------- 234 (397)
T KOG0327|consen 193 IFQE---LPSDVQVVLLSATMPSDVLEVTKKFMREP----------VRILVKKDE------------------------- 234 (397)
T ss_pred HHHH---cCcchhheeecccCcHHHHHHHHHhccCc----------eEEEecchh-------------------------
Confidence 4443 356789999999994 445566666433 322110000
Q ss_pred hhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccc
Q 000916 417 LTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGR 496 (1225)
Q Consensus 417 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~ 496 (1225)
++ .+.+... |..
T Consensus 235 lt-------l~gikq~-----------------------~i~-------------------------------------- 246 (397)
T KOG0327|consen 235 LT-------LEGIKQF-----------------------YIN-------------------------------------- 246 (397)
T ss_pred hh-------hhheeee-----------------------eee--------------------------------------
Confidence 00 0000000 000
Q ss_pred hhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHH
Q 000916 497 TALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINK 576 (1225)
Q Consensus 497 ~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~ 576 (1225)
.-.++ .++.+.+ ++. .-...+||+++.+.+..
T Consensus 247 ----------------------------------------v~k~~--k~~~l~d----l~~--~~~q~~if~nt~r~v~~ 278 (397)
T KOG0327|consen 247 ----------------------------------------VEKEE--KLDTLCD----LYR--RVTQAVIFCNTRRKVDN 278 (397)
T ss_pred ----------------------------------------ccccc--cccHHHH----HHH--hhhcceEEecchhhHHH
Confidence 00000 0111222 222 34567899999999999
Q ss_pred HHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCC
Q 000916 577 TRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNN 656 (1225)
Q Consensus 577 l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~ 656 (1225)
+.+.|..++ +.+..+|+.|.+.+|..+...+..|.-+|++.|+.+.+||+|-++..||++.+
T Consensus 279 l~~~L~~~~-------~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydl----------- 340 (397)
T KOG0327|consen 279 LTDKLRAHG-------FTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDL----------- 340 (397)
T ss_pred HHHHHhhCC-------ceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecc-----------
Confidence 999996554 78899999999999999999999999999999999999999999999998554
Q ss_pred cccccccccCHhhHHhhcCccCCCcc-eEEEEecCHHHHhc
Q 000916 657 VSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLRAAS 696 (1225)
Q Consensus 657 ~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~~~~ 696 (1225)
|.-+.+|.+|+||+||++- |....+.+......
T Consensus 341 -------P~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 341 -------PARKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred -------ccchhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 4557788999999999864 99999999865443
No 76
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=4.3e-18 Score=199.56 Aligned_cols=321 Identities=20% Similarity=0.222 Sum_probs=211.4
Q ss_pred hhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhcc-----CCccEEEEecchHHHHHHHHHHHHHH
Q 000916 184 ERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK-----GETCKIVCTQPRRISATSVAERISVE 258 (1225)
Q Consensus 184 ~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~-----~~~~~IicTQPRRiaAisvAeRVa~E 258 (1225)
+..-.|+.. +.+..+...++++.|++||||||..+-.+|+..+... ..+.+.+|.-|+|..|.++...+ .+
T Consensus 156 F~~Pt~iq~---~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~-~k 231 (593)
T KOG0344|consen 156 FDEPTPIQK---QAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREM-RK 231 (593)
T ss_pred CCCCCcccc---hhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHH-Hh
Confidence 444555533 6777788999999999999999999888888876531 34568999999999888887644 34
Q ss_pred hC--CccC-CeEE--EEEeecccC----CCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccccc
Q 000916 259 RG--ENIG-DNIG--YKIRLESKG----GKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHER 329 (1225)
Q Consensus 259 rg--e~lG-~~VG--Y~IR~es~~----s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER 329 (1225)
.. +.-+ ...+ |-.....+. ....+|++.||-.|...+..+.. .-.|++|.|+|+||++-
T Consensus 232 ~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~-----------~idl~~V~~lV~dEaD~- 299 (593)
T KOG0344|consen 232 YSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKL-----------NIDLSKVEWLVVDEADL- 299 (593)
T ss_pred cCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCc-----------cchhheeeeEeechHHh-
Confidence 43 2111 1111 111111111 13568999999998888876531 13799999999999983
Q ss_pred ccchhHHHHHHHHhCc--CCCCceEEEEcccc--cHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhcccccccc
Q 000916 330 DRYSDFMLAIIRDMLP--SYPHLRLILMSATL--DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDS 405 (1225)
Q Consensus 330 ~~~tD~LL~lLk~ll~--~~~~LKlILMSATl--d~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~ 405 (1225)
-.+--++..-+-+++. ..|++++=++|||+ .++.+++--.. +++.+.+=.. +
T Consensus 300 lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~----------~~~~vivg~~-------------~- 355 (593)
T KOG0344|consen 300 LFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKS----------DLKRVIVGLR-------------N- 355 (593)
T ss_pred hhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhc----------cceeEEEecc-------------h-
Confidence 2222233333333332 23899999999998 45555543221 1222111000 0
Q ss_pred ccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhcc
Q 000916 406 ASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLG 485 (1225)
Q Consensus 406 ~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g 485 (1225)
.+ +..+..+ + +++|..
T Consensus 356 ---------------------sa-------------~~~V~Qe-----------------l-vF~gse------------ 371 (593)
T KOG0344|consen 356 ---------------------SA-------------NETVDQE-----------------L-VFCGSE------------ 371 (593)
T ss_pred ---------------------hH-------------hhhhhhh-----------------h-eeeecc------------
Confidence 00 0000000 0 000000
Q ss_pred ccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEE
Q 000916 486 ADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAIL 565 (1225)
Q Consensus 486 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~IL 565 (1225)
.. .+.++ +.+....-.-++|
T Consensus 372 --------------------------------------------------------~~---K~lA~-rq~v~~g~~PP~l 391 (593)
T KOG0344|consen 372 --------------------------------------------------------KG---KLLAL-RQLVASGFKPPVL 391 (593)
T ss_pred --------------------------------------------------------hh---HHHHH-HHHHhccCCCCeE
Confidence 00 00111 1122233567899
Q ss_pred EEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCC
Q 000916 566 VFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGR 645 (1225)
Q Consensus 566 VFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~ 645 (1225)
||+-..+-...|.+.|.. ...+.|-.+||..++.++....++++.|+..|++|||+.++||++-||..||++.+
T Consensus 392 IfVQs~eRak~L~~~L~~------~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 392 IFVQSKERAKQLFEELEI------YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDF 465 (593)
T ss_pred EEEecHHHHHHHHHHhhh------ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCC
Confidence 999999999999988841 22467888999999999999999999999999999999999999999999998544
Q ss_pred cccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHH
Q 000916 646 MKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQL 692 (1225)
Q Consensus 646 ~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~ 692 (1225)
+-|.-++.+|.||+||.++ |+.|.+||.+
T Consensus 466 ------------------p~s~~syihrIGRtgRag~~g~Aitfytd~ 495 (593)
T KOG0344|consen 466 ------------------PQSDLSYIHRIGRTGRAGRSGKAITFYTDQ 495 (593)
T ss_pred ------------------CchhHHHHHHhhccCCCCCCcceEEEeccc
Confidence 5567789999999999876 9999999983
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.76 E-value=3.6e-16 Score=193.87 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=87.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCC----
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITID---- 635 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~---- 635 (1225)
...+||||+.+.+..+.+.+.|...+ +....||+.+...++..++....+| +|+||||+|.+|++|+
T Consensus 423 ~~~pvLIft~s~~~se~ls~~L~~~g-------i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~ 493 (762)
T TIGR03714 423 TGQPVLLITGSVEMSEIYSELLLREG-------IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKG 493 (762)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCC-------CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCcc
Confidence 46789999999999999999998754 5677899999999988888877776 7999999999999999
Q ss_pred -----CeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCH
Q 000916 636 -----DVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQ 691 (1225)
Q Consensus 636 -----dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~ 691 (1225)
++.+||. |++.+ .+.. .||+|||||.+ ||.|+-++|.
T Consensus 494 v~~~GGL~vIit--------~~~ps----------~rid-~qr~GRtGRqG~~G~s~~~is~ 536 (762)
T TIGR03714 494 VAELGGLAVIGT--------ERMEN----------SRVD-LQLRGRSGRQGDPGSSQFFVSL 536 (762)
T ss_pred ccccCCeEEEEe--------cCCCC----------cHHH-HHhhhcccCCCCceeEEEEEcc
Confidence 9999995 44332 2233 79999999987 5999999885
No 78
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.76 E-value=1.3e-18 Score=170.91 Aligned_cols=107 Identities=36% Similarity=0.495 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCCCCCCCC-------CCCCCCChHHHHHHHHhccCccceeecCCCCCCceEEEecCCcEEEECCCCcCC
Q 000916 876 KQLQTELIKNGFIPEDVSS-------CSHNARVPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNF 948 (1225)
Q Consensus 876 ~QL~~~L~~~gfv~~~~~~-------~n~ns~~~~lika~L~aGlyPnVAr~~~~~~~~~~~v~t~~~~~V~iHPsSvl~ 948 (1225)
+||.++|++.||++.+... .+.+..++.+|+++||+|||||||+... + ..+..+..+..|+|||+|+++
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~--~--~~y~~~~~~~~v~iHPsS~l~ 76 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDN--K--GSYKTLSNGQPVFIHPSSVLF 76 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-T--T--SSEEETTTG-EEEE-TTSTTT
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCC--C--CCEEEecCCCEEEEecCcccc
Confidence 5999999999998754311 1222367789999999999999998753 2 233344477799999999996
Q ss_pred ccCCCCCCCCCeEEEEeeccccCceEEeeccccChhhHHhhcccc
Q 000916 949 KLSFKKTDDCPLMVYDEITRGDGGMHVRNCTVVGPLPLLLLATEI 993 (1225)
Q Consensus 949 ~~~~~~~~~~~wvvy~E~~~t~~k~~ir~~T~V~p~~LlLfgg~~ 993 (1225)
+ .+++||||+|+++| ++.|||+||+|+|.||++|||++
T Consensus 77 ~------~~p~~vvy~e~~~t-~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 77 K------KPPKWVVYHELVRT-SKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp T------TT-SEEEEEEEEES-SSEEEEEEEE--HHHHHHH-TTT
T ss_pred c------cccccchhhhheec-CCcEEEECcCCCHHHHHHHcccC
Confidence 5 34789999999998 68999999999999999999874
No 79
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.75 E-value=1.5e-18 Score=167.41 Aligned_cols=96 Identities=32% Similarity=0.562 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCCCCCCcccccccccccccCchhhhHHHHHHhhcCChhHHHHHhhccCCCCCccCCCChhHHHHHHHHHH
Q 000916 744 NAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYRDPFTLPISPNEKKRATAAKF 823 (1225)
Q Consensus 744 ~Al~~L~~lgALd~~e~LT~LG~~La~LPvdp~lgKmLl~g~~~~CldpiltIaA~ls~~~pF~~P~~~~~~~~a~~~k~ 823 (1225)
+|++.|+.+||||.+++||++|++|+.||++|++||||++|..++|++++++|||+|++++||..|.+..++.+...++.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999876554444434444
Q ss_pred HH------hhhccCCCcHHHHH
Q 000916 824 EL------ASLYGGQSDQLAVI 839 (1225)
Q Consensus 824 ~~------~~~~~~~SDhl~~l 839 (1225)
+| ..+.+..|||+++|
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 44 22347899999986
No 80
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=2.2e-16 Score=197.44 Aligned_cols=106 Identities=20% Similarity=0.169 Sum_probs=92.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCC---CC
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITI---DD 636 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI---~d 636 (1225)
...++|||+.+.++.+.+.+.|...+ +.+..|||.+...++..+.....+| .|+||||+|.+|++| ++
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~g-------i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~ 497 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAG-------IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEG 497 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCC-------CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccc
Confidence 46789999999999999999998754 6788899999988888887776666 799999999999999 79
Q ss_pred eE-----EEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCHH
Q 000916 637 VV-----YVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQL 692 (1225)
Q Consensus 637 V~-----~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~ 692 (1225)
|. +||.+.+ +-|...+.||+|||||.+ ||.|+-++|..
T Consensus 498 V~~~GGL~VI~~d~------------------p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 498 VHELGGLAVIGTER------------------MESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred cccccCcEEEeccC------------------CCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 99 9998777 566778899999999987 59999998853
No 81
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.74 E-value=2.4e-17 Score=192.47 Aligned_cols=320 Identities=18% Similarity=0.206 Sum_probs=222.4
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeE
Q 000916 188 LPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNI 267 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~V 267 (1225)
+|. +.|...|.++...=.+||.+..|+|||..+-...+|.+..+.....+++..|+|..|+++-+-|-.---.--|-.+
T Consensus 47 ~pt-kiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~c 125 (980)
T KOG4284|consen 47 LPT-KIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARC 125 (980)
T ss_pred CCC-chhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcce
Confidence 453 3456678888999999999999999999888888888877667788999999999999999876443111112222
Q ss_pred EEE-----EeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHH
Q 000916 268 GYK-----IRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRD 342 (1225)
Q Consensus 268 GY~-----IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ 342 (1225)
.-- +..+...-.+|+|++.|||.|+.....+.+ +.+.+..+||||++. -+++..+-.-+..
T Consensus 126 svfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~-------------n~s~vrlfVLDEADk-L~~t~sfq~~In~ 191 (980)
T KOG4284|consen 126 SVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAM-------------NMSHVRLFVLDEADK-LMDTESFQDDINI 191 (980)
T ss_pred EEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCC-------------CccceeEEEeccHHh-hhchhhHHHHHHH
Confidence 211 222333346789999999999998887753 678999999999984 3343333333333
Q ss_pred hCcCCC-CceEEEEccccc---HHHHHhhhCCCCeEecCCc---ccceeEEEehhhHHhhhhccccccccccccCCCCCc
Q 000916 343 MLPSYP-HLRLILMSATLD---ADRFSQYFGGCPVIQVPGF---TYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDP 415 (1225)
Q Consensus 343 ll~~~~-~LKlILMSATld---~~~Fs~yF~~~pvi~I~gr---~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~ 415 (1225)
++..-| .-+++.+|||-+ .+.+++|....-.|....+ .|-++.||.+-.
T Consensus 192 ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~------------------------ 247 (980)
T KOG4284|consen 192 IINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKC------------------------ 247 (980)
T ss_pred HHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeecc------------------------
Confidence 333333 458899999994 3567788776555544332 233444433210
Q ss_pred chhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhcccc
Q 000916 416 ELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDG 495 (1225)
Q Consensus 416 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~ 495 (1225)
.|.
T Consensus 248 ---------------------------------------s~n-------------------------------------- 250 (980)
T KOG4284|consen 248 ---------------------------------------SPN-------------------------------------- 250 (980)
T ss_pred ---------------------------------------CCc--------------------------------------
Confidence 000
Q ss_pred chhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHH
Q 000916 496 RTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDIN 575 (1225)
Q Consensus 496 ~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~ 575 (1225)
...+. +.|-.+.|.+|...-+--..|||+....-.+
T Consensus 251 -------------nsvee-------------------------------mrlklq~L~~vf~~ipy~QAlVF~~~~sra~ 286 (980)
T KOG4284|consen 251 -------------NSVEE-------------------------------MRLKLQKLTHVFKSIPYVQALVFCDQISRAE 286 (980)
T ss_pred -------------chHHH-------------------------------HHHHHHHHHHHHhhCchHHHHhhhhhhhhhh
Confidence 00000 0111222333333333445689998888888
Q ss_pred HHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCC
Q 000916 576 KTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYN 655 (1225)
Q Consensus 576 ~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~ 655 (1225)
.+...|..++ +.+-.+-|.|.+.+|..+|...+.-..+|+|||+.-.+||+-|.|..||+-.-
T Consensus 287 ~~a~~L~ssG-------~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~---------- 349 (980)
T KOG4284|consen 287 PIATHLKSSG-------LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDA---------- 349 (980)
T ss_pred HHHHHhhccC-------CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCC----------
Confidence 8888887665 66778899999999999999988888999999999999999999999997332
Q ss_pred CcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHH
Q 000916 656 NVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQL 692 (1225)
Q Consensus 656 ~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~ 692 (1225)
+..-..|.||.|||||.+. |....|+-+.
T Consensus 350 --------p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 350 --------PADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred --------CcchHHHHHHhhhcccccccceeEEEeccc
Confidence 3344567899999999987 9999887653
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.72 E-value=3.3e-16 Score=197.13 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=106.0
Q ss_pred CCChHHHHHHHHHHHc---CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccC
Q 000916 188 LPISSFKDVITSTVDS---NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIG 264 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~~---~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG 264 (1225)
...+..|++.++.|.+ ++++++.|+||||||..+-+.+.+.. ..| .++++.-|++..|.++.+++.+.+|..+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l-~~g--~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~ 219 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL-AQG--KQALVLVPEIALTPQMLARFRARFGAPVA 219 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH-HcC--CeEEEEeCcHHHHHHHHHHHHHHhCCCEE
Confidence 3467888899999987 48899999999999988877665544 333 57999999999999999999876654322
Q ss_pred CeEEEEE---eec---ccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchh----
Q 000916 265 DNIGYKI---RLE---SKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSD---- 334 (1225)
Q Consensus 265 ~~VGY~I---R~e---s~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD---- 334 (1225)
...|..- |.+ .......+|+++|.+.+. - .+.++++|||||+|+-+...+
T Consensus 220 ~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----~---------------p~~~l~liVvDEeh~~s~~~~~~p~ 279 (679)
T PRK05580 220 VLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----L---------------PFKNLGLIIVDEEHDSSYKQQEGPR 279 (679)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----c---------------cccCCCEEEEECCCccccccCcCCC
Confidence 1111100 000 001234689999998764 1 367889999999996443221
Q ss_pred --H-HHHHHHHhCcCCCCceEEEEcccccHHHHHhhh
Q 000916 335 --F-MLAIIRDMLPSYPHLRLILMSATLDADRFSQYF 368 (1225)
Q Consensus 335 --~-LL~lLk~ll~~~~~LKlILMSATld~~~Fs~yF 368 (1225)
. -++++|. ...+.++|++|||...+.+....
T Consensus 280 y~~r~va~~ra---~~~~~~~il~SATps~~s~~~~~ 313 (679)
T PRK05580 280 YHARDLAVVRA---KLENIPVVLGSATPSLESLANAQ 313 (679)
T ss_pred CcHHHHHHHHh---hccCCCEEEEcCCCCHHHHHHHh
Confidence 1 1122222 34678999999999988877643
No 83
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.71 E-value=4.1e-16 Score=188.13 Aligned_cols=111 Identities=21% Similarity=0.165 Sum_probs=100.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeE
Q 000916 559 SEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVV 638 (1225)
Q Consensus 559 ~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~ 638 (1225)
...++-+||+.++.+++.+.+.|...+ +.+.++|++|+.+++..+.+.+-++..+|||||+..-.||+.|||+
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g-------~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVR 300 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNG-------ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVR 300 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCC-------CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCce
Confidence 356778999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHHH
Q 000916 639 YVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLRA 694 (1225)
Q Consensus 639 ~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~~ 694 (1225)
|||+.++ |-|-.+|-|=.|||||-+ |-.|+-||+..+.
T Consensus 301 fViH~~l------------------P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 301 FVIHYDL------------------PGSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred EEEEecC------------------CCCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 9998777 567788999999999965 5999999997553
No 84
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.70 E-value=5.2e-16 Score=195.52 Aligned_cols=180 Identities=17% Similarity=0.329 Sum_probs=138.3
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHH----hccCCccEEEEecchHHHHHHHHHHHHHHhCC
Q 000916 186 SKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHI----WSKGETCKIVCTQPRRISATSVAERISVERGE 261 (1225)
Q Consensus 186 ~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~----~~~~~~~~IicTQPRRiaAisvAeRVa~Erge 261 (1225)
--.....+|++.+.+|..+.-|+|+++||+||| ++-|.+ ..++ .++++|.|-+...-+....+-++.|.
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKT-----vVaeyAi~~al~~~--qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKT-----VVAEYAIALALRDG--QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcc-----hHHHHHHHHHHHcC--CceEeccchhhhhhhHHHHHHHHhhh
Confidence 356678999999999999999999999999999 444433 2333 36999999999999999989888875
Q ss_pred ccCCeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHH
Q 000916 262 NIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIR 341 (1225)
Q Consensus 262 ~lG~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk 341 (1225)
- -+.||-- ..+-.+.+.+.+++|||.||-.+|..+. ..+.++.+||+||||- -.|--=+..+
T Consensus 189 v-~~~vGL~-TGDv~IN~~A~clvMTTEILRnMlyrg~-------------~~~~~i~~ViFDEvHy---i~D~eRG~VW 250 (1041)
T COG4581 189 V-ADMVGLM-TGDVSINPDAPCLVMTTEILRNMLYRGS-------------ESLRDIEWVVFDEVHY---IGDRERGVVW 250 (1041)
T ss_pred h-hhhccce-ecceeeCCCCceEEeeHHHHHHHhccCc-------------ccccccceEEEEeeee---ccccccchhH
Confidence 4 2335542 3355567888999999999999988774 4899999999999993 1111112222
Q ss_pred H--hCcCCCCceEEEEcccc-cHHHHHhhhC-----CCCeEecCCcccceeEEEehh
Q 000916 342 D--MLPSYPHLRLILMSATL-DADRFSQYFG-----GCPVIQVPGFTYPVKSFYLED 390 (1225)
Q Consensus 342 ~--ll~~~~~LKlILMSATl-d~~~Fs~yF~-----~~pvi~I~gr~~pV~~~yLed 390 (1225)
+ ++-.-.++++|+||||+ |++.|+.|++ +|.+|..+.|.-|.+.||...
T Consensus 251 EE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~ 307 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG 307 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecC
Confidence 2 12223468999999999 9999999997 578899999999999888654
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=2.1e-15 Score=187.13 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCC-CceEEEecchhccccCCCCeE
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPG-CRKIILSTNIAETAITIDDVV 638 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g-~rKIILATNIAEtSITI~dV~ 638 (1225)
.+..||||+...+.+..+.+.|. +..+||.++..+|.++|+.|..| ..+++|+|+++.+||+||++.
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~ 562 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEAN 562 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCC
Confidence 56799999998888887777652 22379999999999999999865 679999999999999999999
Q ss_pred EEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEE-------EEecCHH
Q 000916 639 YVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GIC-------YHLYSQL 692 (1225)
Q Consensus 639 ~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~C-------yrLys~~ 692 (1225)
+||.. ++ .+-|+..+.||.||++|..+ |.+ |.|.++.
T Consensus 563 vvI~~--------s~---------~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 563 VLIQI--------SS---------HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred EEEEe--------CC---------CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 99952 11 13488999999999999877 454 8888763
No 86
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=9.6e-15 Score=179.45 Aligned_cols=104 Identities=22% Similarity=0.167 Sum_probs=86.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCC---Ce
Q 000916 561 DGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITID---DV 637 (1225)
Q Consensus 561 ~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~---dV 637 (1225)
+.+||||+.+.++.+.+.+.|...+ +.+..|||.+...++..+.....+ .+|+||||+|.+|++|+ +|
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~g-------i~~~~Lhg~~~~rE~~ii~~ag~~--g~VlVATdmAgRGtDI~l~~~V 543 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREAG-------LPHQVLNAKQDAEEAAIVARAGQR--GRITVATNMAGRGTDIKLEPGV 543 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCC-------CCEEEeeCCcHHHHHHHHHHcCCC--CcEEEEccchhcccCcCCccch
Confidence 4679999999999999999998754 678899999876665555544444 46999999999999999 78
Q ss_pred E-----EEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCH
Q 000916 638 V-----YVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQ 691 (1225)
Q Consensus 638 ~-----~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~ 691 (1225)
. +||++.+ +-|.-.+.||+||+||.+ ||.|+-++|.
T Consensus 544 ~~~GGLhVI~~d~------------------P~s~r~y~hr~GRTGRqG~~G~s~~~is~ 585 (656)
T PRK12898 544 AARGGLHVILTER------------------HDSARIDRQLAGRCGRQGDPGSYEAILSL 585 (656)
T ss_pred hhcCCCEEEEcCC------------------CCCHHHHHHhcccccCCCCCeEEEEEech
Confidence 7 9998777 556677889999999987 5999999985
No 87
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.68 E-value=5.3e-15 Score=181.63 Aligned_cols=435 Identities=20% Similarity=0.205 Sum_probs=269.3
Q ss_pred HHHHcCCeEEEEccCCCchhchHHHHHHHHHhc-------cCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEE
Q 000916 199 STVDSNQVVLISGETGCGKTTQVPQFLLEHIWS-------KGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKI 271 (1225)
Q Consensus 199 ~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~-------~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~I 271 (1225)
.+-.+|-..+||+|||||||-..-+-||...-. .....+||+..|.+.+|..+++...+.++ .+|-.|+--.
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~-~~gi~v~ELT 199 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA-PLGISVRELT 199 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-cccceEEEec
Confidence 356789999999999999999888888866532 22457999999999998888887766553 3444443211
Q ss_pred eecccC----CCCccEEEEccH---HHHHHHHhcCcccccccCCCccccccCCccEEEecccc----ccccchhHHHHHH
Q 000916 272 RLESKG----GKHSSIVFCTNG---VLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH----ERDRYSDFMLAII 340 (1225)
Q Consensus 272 R~es~~----s~~t~I~f~T~G---vLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvH----ER~~~tD~LL~lL 340 (1225)
.+... -..|.|++.||. ++-|.-..+. ...+.|..||||||| +|+.-...+++.+
T Consensus 200 -GD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~-------------~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRt 265 (1230)
T KOG0952|consen 200 -GDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDS-------------ALFSLVRLVIIDEVHLLHDDRGPVLETIVART 265 (1230)
T ss_pred -CcchhhHHHHHhcCEEEecccceeeeeeeeccch-------------hhhhheeeEEeeeehhhcCcccchHHHHHHHH
Confidence 12222 247899999998 3445444332 378899999999999 5777666666655
Q ss_pred HHhCc-CCCCceEEEEcccc-cHHHHHhhhCCC---CeEecCCcccce--eEEEehhhHHhhhhccccccccccccCCCC
Q 000916 341 RDMLP-SYPHLRLILMSATL-DADRFSQYFGGC---PVIQVPGFTYPV--KSFYLEDVLSILKSAESNHLDSASLIVPNE 413 (1225)
Q Consensus 341 k~ll~-~~~~LKlILMSATl-d~~~Fs~yF~~~---pvi~I~gr~~pV--~~~yLedil~~~~~~~~~~~~~~~~~~p~~ 413 (1225)
.++.. ....+|+|.+|||+ |.+..+.|++-- .++...++--|| +..++-
T Consensus 266 lr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG------------------------ 321 (1230)
T KOG0952|consen 266 LRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIG------------------------ 321 (1230)
T ss_pred HHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEe------------------------
Confidence 44433 44679999999999 899999988732 233323322222 222110
Q ss_pred CcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhcc
Q 000916 414 DPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAK 493 (1225)
Q Consensus 414 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~ 493 (1225)
....
T Consensus 322 ------------------------------------------------------------------------~k~~---- 325 (1230)
T KOG0952|consen 322 ------------------------------------------------------------------------IKGK---- 325 (1230)
T ss_pred ------------------------------------------------------------------------eecc----
Confidence 0000
Q ss_pred ccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHH
Q 000916 494 DGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWED 573 (1225)
Q Consensus 494 ~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~e 573 (1225)
+...+. +.+|......++..+ ..+-.||||++.+.+
T Consensus 326 ---------~~~~~~--------------------------------~~~d~~~~~kv~e~~---~~g~qVlvFvhsR~~ 361 (1230)
T KOG0952|consen 326 ---------KNRQQK--------------------------------KNIDEVCYDKVVEFL---QEGHQVLVFVHSRNE 361 (1230)
T ss_pred ---------cchhhh--------------------------------hhHHHHHHHHHHHHH---HcCCeEEEEEecChH
Confidence 000000 001111111222222 246789999999999
Q ss_pred HHHHHHHHHcCC-------CCCCCC--c-------eEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCe
Q 000916 574 INKTRDRLLANP-------FFRDTS--K-------FVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDV 637 (1225)
Q Consensus 574 I~~l~~~L~~~~-------~~~~~~--~-------~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV 637 (1225)
-.+.++.|.+.. .|-... + ..+-..|++|..+++.-+-+-+..|..+|++||....-|+.+|+-
T Consensus 362 Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~ 441 (1230)
T KOG0952|consen 362 TIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAY 441 (1230)
T ss_pred HHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcce
Confidence 888888876431 121111 2 456678999999998888777788999999999999999999997
Q ss_pred EEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc---ceEEEEecCH---HHHhcCCCCCCC--------
Q 000916 638 VYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ---AGICYHLYSQ---LRAASLPDFQVP-------- 703 (1225)
Q Consensus 638 ~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~---~G~CyrLys~---~~~~~m~~~~~P-------- 703 (1225)
-.+|= -...||+..|.- +-.+--...|--|||||-+ .|.-+-+=++ ..|.+|.-.+-|
T Consensus 442 aViIK----GT~~ydsskg~f----~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~ 513 (1230)
T KOG0952|consen 442 AVIIK----GTQVYDSSKGSF----VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPC 513 (1230)
T ss_pred EEEec----CCcccccccCce----eeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHH
Confidence 77772 245788876521 1234456789999999954 3666555554 457666655533
Q ss_pred -------cccc---cChhhHHHHHhhcC----CCCChhhhh--hhcCCC-CcH-----HHHHHHHHHHHHcC--CCCCCC
Q 000916 704 -------EIKR---IPIEELCLQVKLLD----PNCNIEDFL--QKTLDP-PVS-----VTIRNAIIVLQDIG--ALSLDE 759 (1225)
Q Consensus 704 -------EI~R---~pL~~l~L~~K~l~----~~~~i~~fL--~~~ldP-P~~-----~av~~Al~~L~~lg--ALd~~e 759 (1225)
||-- +++++.+=.+|.-- ...+...|- ...+.+ |.. +-+..|+..|-+.. +.|...
T Consensus 514 L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t 593 (1230)
T KOG0952|consen 514 LIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERT 593 (1230)
T ss_pred HHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEeccc
Confidence 2221 12222222222100 000111110 022222 222 23445555554442 234332
Q ss_pred ---cccccccccccccCchhhhHHHHHHhh-cCChhHHHHHhhcc
Q 000916 760 ---KVTELGEKLGCLSVHPLMSKMLFFAIL-MDCLDPALTLACAS 800 (1225)
Q Consensus 760 ---~LT~LG~~La~LPvdp~lgKmLl~g~~-~~CldpiltIaA~l 800 (1225)
.-|++||.++.+-+.-..=+.++...- |--.|.||.|.|..
T Consensus 594 ~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~a 638 (1230)
T KOG0952|consen 594 GYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMA 638 (1230)
T ss_pred ceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhh
Confidence 579999999999999888888888776 66788888887763
No 88
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.67 E-value=7.2e-15 Score=181.41 Aligned_cols=106 Identities=20% Similarity=0.165 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCC---
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDD--- 636 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~d--- 636 (1225)
.+-+||||+.+.++.+.+.+.|...+ +....||+. +.++...+..+..+.-.|.||||+|.+|++|+.
T Consensus 404 ~grpvLV~t~si~~se~ls~~L~~~g-------i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V 474 (745)
T TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKERG-------IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEV 474 (745)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHcC-------CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccch
Confidence 46789999999999999999998764 456679998 667777777777788899999999999999999
Q ss_pred ----eEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHH
Q 000916 637 ----VVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQL 692 (1225)
Q Consensus 637 ----V~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~ 692 (1225)
.-+||.+.+ +-|+-...||+|||||.+. |.+.-+.|..
T Consensus 475 ~~~GGl~VI~t~~------------------p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 475 KELGGLYVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred hhcCCcEEEecCC------------------CCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 559998776 6677888999999999875 9998888753
No 89
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=9.6e-16 Score=181.89 Aligned_cols=173 Identities=20% Similarity=0.335 Sum_probs=126.9
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEE
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGY 269 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY 269 (1225)
...+|.+.+..|.+++-|+|++.|.+|||...--.|.-.+- ..-|||+|.|-+...-+-..-+-.|++. ||.
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr---~kQRVIYTSPIKALSNQKYREl~~EF~D-----VGL 201 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR---EKQRVIYTSPIKALSNQKYRELLEEFKD-----VGL 201 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH---hcCeEEeeChhhhhcchhHHHHHHHhcc-----cce
Confidence 56788999999999999999999999999543322322222 2359999999777766667667777653 443
Q ss_pred EEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccc-cccchhHHHHHHHHhCcCCC
Q 000916 270 KIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE-RDRYSDFMLAIIRDMLPSYP 348 (1225)
Q Consensus 270 ~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE-R~~~tD~LL~lLk~ll~~~~ 348 (1225)
. ..+-..++++.-++|||.+|-.+|-.+. ..+..+.+||.||||- ||-+-.+.. ---++-..+
T Consensus 202 M-TGDVTInP~ASCLVMTTEILRsMLYRGS-------------EvmrEVaWVIFDEIHYMRDkERGVVW--EETIIllP~ 265 (1041)
T KOG0948|consen 202 M-TGDVTINPDASCLVMTTEILRSMLYRGS-------------EVMREVAWVIFDEIHYMRDKERGVVW--EETIILLPD 265 (1041)
T ss_pred e-ecceeeCCCCceeeeHHHHHHHHHhccc-------------hHhheeeeEEeeeehhccccccceee--eeeEEeccc
Confidence 2 2355567889999999999999988764 4789999999999992 222111100 001122346
Q ss_pred CceEEEEcccc-cHHHHHhhhC-----CCCeEecCCcccceeEE
Q 000916 349 HLRLILMSATL-DADRFSQYFG-----GCPVIQVPGFTYPVKSF 386 (1225)
Q Consensus 349 ~LKlILMSATl-d~~~Fs~yF~-----~~pvi~I~gr~~pV~~~ 386 (1225)
+.|.|.+|||+ |+-.|++|.. .|.|+.-.-|.-|++.|
T Consensus 266 ~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHy 309 (1041)
T KOG0948|consen 266 NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHY 309 (1041)
T ss_pred cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceee
Confidence 79999999999 9999999874 58888888898898876
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=9.5e-16 Score=186.75 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=74.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHH--HHHhcCCCCCCceEEEecchhccccCCCCeEEE
Q 000916 563 AILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQ--KKVFKRPPPGCRKIILSTNIAETAITIDDVVYV 640 (1225)
Q Consensus 563 ~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ--~~vF~~~p~g~rKIILATNIAEtSITI~dV~~V 640 (1225)
.+-.+=+|.+.+++....+ | +...|..+|+.++.... .++++.+..|...|+|+|++++.|+++|+|..|
T Consensus 263 ~l~~~g~Gte~~~e~l~~~-----f---p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV 334 (505)
T TIGR00595 263 DLVYKGYGTEQVEEELAKL-----F---PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLV 334 (505)
T ss_pred eeEeecccHHHHHHHHHhh-----C---CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEE
Confidence 4555566777665544433 2 13679999999987654 788899999999999999999999999999988
Q ss_pred E--eCCCcccccccCCCCcccccccccCHhhHHhhcCccCCC-cceEEE
Q 000916 641 I--DSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRC-QAGICY 686 (1225)
Q Consensus 641 I--DsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~-~~G~Cy 686 (1225)
+ |... .-+...+...--.-..+.|++|||||. .+|.++
T Consensus 335 ~vl~aD~--------~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 335 GVLDADS--------GLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred EEEcCcc--------cccCcccchHHHHHHHHHHHHhccCCCCCCCEEE
Confidence 4 5332 111111111111224578999999995 458887
No 91
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=2.4e-15 Score=169.82 Aligned_cols=306 Identities=22% Similarity=0.216 Sum_probs=205.4
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhcc-CCccEEEEecchHHHHHHHHHHHHHHhCCccCCe----EE
Q 000916 194 KDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK-GETCKIVCTQPRRISATSVAERISVERGENIGDN----IG 268 (1225)
Q Consensus 194 r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~-~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~----VG 268 (1225)
+...+..|.+...|+-.+-||||||..+-.+.++.+.+. ..+.+.++.-|+|..|+++-+ |-++.|.-.+.. ||
T Consensus 48 qRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlk-vvkdlgrgt~lr~s~~~g 126 (529)
T KOG0337|consen 48 QRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLK-VVKDLGRGTKLRQSLLVG 126 (529)
T ss_pred hcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHH-HHHHhccccchhhhhhcc
Confidence 344556777888888999999999999999999987642 345688999999999999987 556666544432 23
Q ss_pred EEEeecc---cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc
Q 000916 269 YKIRLES---KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP 345 (1225)
Q Consensus 269 Y~IR~es---~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~ 345 (1225)
+ ...|. ....+..|+++|+|+++.....-. -.|+.+-+||.||++ |-..+.|--. |.+++.
T Consensus 127 g-D~~eeqf~~l~~npDii~ATpgr~~h~~vem~-------------l~l~sveyVVfdEad-rlfemgfqeq-l~e~l~ 190 (529)
T KOG0337|consen 127 G-DSIEEQFILLNENPDIIIATPGRLLHLGVEMT-------------LTLSSVEYVVFDEAD-RLFEMGFQEQ-LHEILS 190 (529)
T ss_pred c-chHHHHHHHhccCCCEEEecCceeeeeehhee-------------ccccceeeeeehhhh-HHHhhhhHHH-HHHHHH
Confidence 2 22232 234578899999999987765443 279999999999998 5444433222 334443
Q ss_pred C-CCCceEEEEcccccHH--HHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhhh
Q 000916 346 S-YPHLRLILMSATLDAD--RFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENK 422 (1225)
Q Consensus 346 ~-~~~LKlILMSATld~~--~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 422 (1225)
+ .-+.+.++||||+.-. .|++ .|-+.||-+. |+ +-
T Consensus 191 rl~~~~QTllfSatlp~~lv~fak----------aGl~~p~lVR-ld-ve------------------------------ 228 (529)
T KOG0337|consen 191 RLPESRQTLLFSATLPRDLVDFAK----------AGLVPPVLVR-LD-VE------------------------------ 228 (529)
T ss_pred hCCCcceEEEEeccCchhhHHHHH----------ccCCCCceEE-ee-hh------------------------------
Confidence 3 3356999999999433 5655 2455566544 22 10
Q ss_pred hhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhc
Q 000916 423 STLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLG 502 (1225)
Q Consensus 423 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~ 502 (1225)
.-|+. .++.
T Consensus 229 ----tkise---------~lk~---------------------------------------------------------- 237 (529)
T KOG0337|consen 229 ----TKISE---------LLKV---------------------------------------------------------- 237 (529)
T ss_pred ----hhcch---------hhhh----------------------------------------------------------
Confidence 00000 0000
Q ss_pred cccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHH
Q 000916 503 EQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMD-SEDGAILVFLPGWEDINKTRDRL 581 (1225)
Q Consensus 503 ~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~-~~~G~ILVFLpG~~eI~~l~~~L 581 (1225)
......+ .+. +..|.+|+.. ..+...+||+++...++.+.+.|
T Consensus 238 -------------------------------~f~~~~~----a~K-~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll 281 (529)
T KOG0337|consen 238 -------------------------------RFFRVRK----AEK-EAALLSILGGRIKDKQTIVFVATKHHVEYVRGLL 281 (529)
T ss_pred -------------------------------heeeecc----HHH-HHHHHHHHhccccccceeEEecccchHHHHHHHH
Confidence 0000000 000 1112233322 12457899999999999999988
Q ss_pred HcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCC-cccccccCCCCcccc
Q 000916 582 LANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGR-MKEKSYDPYNNVSTL 660 (1225)
Q Consensus 582 ~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~-~Ke~~yd~~~~~s~L 660 (1225)
...+ +.+--+||+|++..++.-+..|..++.-|++.|++|.+|++||-..-||++.+ .+.+.|-
T Consensus 282 ~~~g-------~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFv-------- 346 (529)
T KOG0337|consen 282 RDFG-------GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFV-------- 346 (529)
T ss_pred HhcC-------CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEE--------
Confidence 7654 33445799999999998899999999999999999999999999999999877 4555554
Q ss_pred cccccCHhhHHhhcCccCCCc-ceEEEEecCH
Q 000916 661 QSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQ 691 (1225)
Q Consensus 661 ~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~ 691 (1225)
+|.||+-|.+ .|..|-+...
T Consensus 347 -----------hRVgr~aragrtg~aYs~V~~ 367 (529)
T KOG0337|consen 347 -----------HRVGRVARAGRTGRAYSLVAS 367 (529)
T ss_pred -----------EEecchhhccccceEEEEEec
Confidence 5666665544 4888888765
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.64 E-value=2.2e-14 Score=158.81 Aligned_cols=296 Identities=20% Similarity=0.293 Sum_probs=193.7
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhC-CccCCeEEEEEee
Q 000916 195 DVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERG-ENIGDNIGYKIRL 273 (1225)
Q Consensus 195 ~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erg-e~lG~~VGY~IR~ 273 (1225)
+.+++.|.+.+.++|-+-||+|||..+-|-|-... .. +.+|.+.-||--.+..++.|+.+-.. +.+ ..=| .
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al-~~--G~~vciASPRvDVclEl~~Rlk~aF~~~~I--~~Ly---g 178 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL-NQ--GGRVCIASPRVDVCLELYPRLKQAFSNCDI--DLLY---G 178 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH-hc--CCeEEEecCcccchHHHHHHHHHhhccCCe--eeEe---c
Confidence 45888999999999999999999998877664333 32 35899999999999999999988764 332 2222 2
Q ss_pred cccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHH-HHHhCcCCCCceE
Q 000916 274 ESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAI-IRDMLPSYPHLRL 352 (1225)
Q Consensus 274 es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~l-Lk~ll~~~~~LKl 352 (1225)
+|..--.+.+++||+-.|||.-. .++.+|||||+---.-.|-.|.. ++... .+.--+
T Consensus 179 ~S~~~fr~plvVaTtHQLlrFk~--------------------aFD~liIDEVDAFP~~~d~~L~~Av~~ar--k~~g~~ 236 (441)
T COG4098 179 DSDSYFRAPLVVATTHQLLRFKQ--------------------AFDLLIIDEVDAFPFSDDQSLQYAVKKAR--KKEGAT 236 (441)
T ss_pred CCchhccccEEEEehHHHHHHHh--------------------hccEEEEeccccccccCCHHHHHHHHHhh--cccCce
Confidence 33322347899999999998654 45789999999766666665543 45443 344568
Q ss_pred EEEcccccHHHHHhhhC-CCCeEecCCccc----ceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhhhhhhHH
Q 000916 353 ILMSATLDADRFSQYFG-GCPVIQVPGFTY----PVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKSTLDE 427 (1225)
Q Consensus 353 ILMSATld~~~Fs~yF~-~~pvi~I~gr~~----pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~ 427 (1225)
|+||||..-+.-.+-.. +-..+.+|.|-| ||-.+.
T Consensus 237 IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~---------------------------------------- 276 (441)
T COG4098 237 IYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFV---------------------------------------- 276 (441)
T ss_pred EEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceE----------------------------------------
Confidence 89999986554444332 233455554422 221110
Q ss_pred HHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccccCc
Q 000916 428 AISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQ 507 (1225)
Q Consensus 428 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~ 507 (1225)
|... |.
T Consensus 277 -----w~~~----------------------------------------------------------------~~----- 282 (441)
T COG4098 277 -----WIGN----------------------------------------------------------------WN----- 282 (441)
T ss_pred -----Eecc----------------------------------------------------------------HH-----
Confidence 1000 00
Q ss_pred hhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcC-CCCeEEEEcCCHHHHHHHHHHHHcCCC
Q 000916 508 PEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDS-EDGAILVFLPGWEDINKTRDRLLANPF 586 (1225)
Q Consensus 508 ~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~-~~G~ILVFLpG~~eI~~l~~~L~~~~~ 586 (1225)
+ .++..++.. .|+.+|.... ..-++|||+|..+-.+++.+.|+..-
T Consensus 283 --------k--------------------~l~r~kl~~----kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~- 329 (441)
T COG4098 283 --------K--------------------KLQRNKLPL----KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL- 329 (441)
T ss_pred --------H--------------------HhhhccCCH----HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC-
Confidence 0 000001111 1222332222 35689999999999999999995431
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEE-eCCCcccccccCCCCccccccccc
Q 000916 587 FRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVI-DSGRMKEKSYDPYNNVSTLQSSWV 665 (1225)
Q Consensus 587 ~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VI-DsG~~Ke~~yd~~~~~s~L~~~wi 665 (1225)
....+...||. ...|.+-.+.+++|+.+|+++|.|.|+|+|+|+|..+| ++ .. .--
T Consensus 330 ----~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlga----------eh-------~vf 386 (441)
T COG4098 330 ----PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGA----------EH-------RVF 386 (441)
T ss_pred ----Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecC----------Cc-------ccc
Confidence 23456677874 33456666778899999999999999999999997666 32 11 135
Q ss_pred CHhhHHhhcCccCCC--cc-e-EEEEecC
Q 000916 666 SKASAKQRAGRAGRC--QA-G-ICYHLYS 690 (1225)
Q Consensus 666 Skasa~QR~GRAGR~--~~-G-~CyrLys 690 (1225)
|+++..|-+||+||. +| | +||-=|.
T Consensus 387 TesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 387 TESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred cHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 789999999999994 44 4 4444443
No 93
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.62 E-value=1.2e-14 Score=176.51 Aligned_cols=169 Identities=21% Similarity=0.357 Sum_probs=126.2
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHh--ccCCccEEEEecchHHHHHHHHHHHHHHhCCccCC
Q 000916 188 LPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIW--SKGETCKIVCTQPRRISATSVAERISVERGENIGD 265 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~--~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~ 265 (1225)
+-+..+|.+.+..++.+.-|+|++.|.+||| .+.|.++ ......|.|+|-|-+. +|.-+ -.++.+..|+
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKT-----vVAEYAialaq~h~TR~iYTSPIKA--LSNQK--fRDFk~tF~D 366 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKT-----VVAEYAIALAQKHMTRTIYTSPIKA--LSNQK--FRDFKETFGD 366 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcc-----hHHHHHHHHHHhhccceEecchhhh--hccch--HHHHHHhccc
Confidence 4477899999999999999999999999999 4445543 2333468999999554 44433 1233445543
Q ss_pred eEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccc-----ccccchhHHHHHH
Q 000916 266 NIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH-----ERDRYSDFMLAII 340 (1225)
Q Consensus 266 ~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvH-----ER~~~tD~LL~lL 340 (1225)
|| -+..+....+.+.+++|||.||-.+|-.+. ..++++..||+|||| ||++= .
T Consensus 367 -vg-LlTGDvqinPeAsCLIMTTEILRsMLYrga-------------dliRDvE~VIFDEVHYiND~eRGvV-------W 424 (1248)
T KOG0947|consen 367 -VG-LLTGDVQINPEASCLIMTTEILRSMLYRGA-------------DLIRDVEFVIFDEVHYINDVERGVV-------W 424 (1248)
T ss_pred -cc-eeecceeeCCCcceEeehHHHHHHHHhccc-------------chhhccceEEEeeeeeccccccccc-------c
Confidence 55 567788889999999999999999998764 378999999999999 45431 1
Q ss_pred HHhC-cCCCCceEEEEcccc-cHHHHHhhhCC-----CCeEecCCcccceeEEE
Q 000916 341 RDML-PSYPHLRLILMSATL-DADRFSQYFGG-----CPVIQVPGFTYPVKSFY 387 (1225)
Q Consensus 341 k~ll-~~~~~LKlILMSATl-d~~~Fs~yF~~-----~pvi~I~gr~~pV~~~y 387 (1225)
-+++ -..++.++|++|||+ |...|++|-|. .-||.-..|.-|.+.|+
T Consensus 425 EEViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l 478 (1248)
T KOG0947|consen 425 EEVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYL 478 (1248)
T ss_pred eeeeeeccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEE
Confidence 1111 223579999999999 99999999984 23566667888888764
No 94
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.61 E-value=8e-16 Score=145.33 Aligned_cols=90 Identities=38% Similarity=0.626 Sum_probs=78.6
Q ss_pred HHHHHHHHcCCCCCCCcccccccccccccCchhhhHHHHHHhhc-CChhHHHHHhhccCCCCCccCCCChhHHHHHHHHH
Q 000916 744 NAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILM-DCLDPALTLACASDYRDPFTLPISPNEKKRATAAK 822 (1225)
Q Consensus 744 ~Al~~L~~lgALd~~e~LT~LG~~La~LPvdp~lgKmLl~g~~~-~CldpiltIaA~ls~~~pF~~P~~~~~~~~a~~~k 822 (1225)
+|++.|+.+||||.+++||++|+.|+.|||||++||||+.|..+ +|.+++++|+|+++..+||..| ..+.+....+
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~---~~~~~~~~~~ 77 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP---EKRAEADAAR 77 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc---hHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999 9999999999999999998765 3455566666
Q ss_pred HHHhhhccC-CCcHHHHH
Q 000916 823 FELASLYGG-QSDQLAVI 839 (1225)
Q Consensus 823 ~~~~~~~~~-~SDhl~~l 839 (1225)
..|. +. .|||++++
T Consensus 78 ~~~~---~~~~~D~~~~l 92 (92)
T smart00847 78 RRFA---SGRESDHLTLL 92 (92)
T ss_pred HHcc---CCCCCChhhhC
Confidence 6665 35 79999863
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.60 E-value=2.3e-13 Score=177.82 Aligned_cols=393 Identities=16% Similarity=0.217 Sum_probs=213.0
Q ss_pred CChHHHHHHHHHHH-----cCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCcc
Q 000916 189 PISSFKDVITSTVD-----SNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 189 Pi~~~r~eIl~aI~-----~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
....+|.+.++++. .++-.+|+.+||||||--....+ ...+..+...+|+++.||+.++-+.++.+..- +...
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~-~~~~ 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKAKRFRRILFLVDRSALGEQAEDAFKDT-KIEG 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhcCccCeEEEEecHHHHHHHHHHHHHhc-cccc
Confidence 34568888776654 34668888999999995444333 33333334469999999999998888766432 1111
Q ss_pred CCeE--EEEEe-ecc-cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhH----
Q 000916 264 GDNI--GYKIR-LES-KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDF---- 335 (1225)
Q Consensus 264 G~~V--GY~IR-~es-~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~---- 335 (1225)
+..+ -|.+. +.. .....++|+|||...|.+.+.... .+.. .+.+..+++|||||+| |+..-|-
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~------~~~~--~~~~~~fdlIIiDEaH-Rs~~~d~~~~~ 561 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSD------DPMD--KPPVDQYDCIIVDEAH-RGYTLDKEMSE 561 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccc------cccc--cCCCCcccEEEEECCC-CCCcccccccc
Confidence 1111 02221 111 223467999999999988765321 0000 1256788999999999 6642110
Q ss_pred ----------HHHHHHHhCcCCCCceEEEEcccccHHHHHhhhCCCCeEecCCcccceeEEEehhhHHhhhhcccccccc
Q 000916 336 ----------MLAIIRDMLPSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDS 405 (1225)
Q Consensus 336 ----------LL~lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~~pV~~~yLedil~~~~~~~~~~~~~ 405 (1225)
.....+.++. +.+-.+|.|+||..-. ...|||. ||-.|-+++.+.
T Consensus 562 ~~~~~~~~~~~~~~yr~iL~-yFdA~~IGLTATP~r~-t~~~FG~-----------pv~~Ysl~eAI~------------ 616 (1123)
T PRK11448 562 GELQFRDQLDYVSKYRRVLD-YFDAVKIGLTATPALH-TTEIFGE-----------PVYTYSYREAVI------------ 616 (1123)
T ss_pred chhccchhhhHHHHHHHHHh-hcCccEEEEecCCccc-hhHHhCC-----------eeEEeeHHHHHh------------
Confidence 1345677776 3456789999999633 3467762 333333333211
Q ss_pred ccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhcc
Q 000916 406 ASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLG 485 (1225)
Q Consensus 406 ~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g 485 (1225)
..| +++|. .|..+.. .+...|
T Consensus 617 -------------------------DG~-------------------Lv~~~------~p~~i~t---------~~~~~g 637 (1123)
T PRK11448 617 -------------------------DGY-------------------LIDHE------PPIRIET---------RLSQEG 637 (1123)
T ss_pred -------------------------cCC-------------------cccCc------CCEEEEE---------Eecccc
Confidence 000 00000 0000000 000000
Q ss_pred ccchhhc-cccc---h-hhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhh-hccCcccccHHHHHHHHHHHHhcC
Q 000916 486 ADCQLKA-KDGR---T-ALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYL-ATVNPELIDLVLIEQLLRKICMDS 559 (1225)
Q Consensus 486 ~~~~~~~-~~~~---~-a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~-~~~~~~~id~~Li~~ll~~I~~~~ 559 (1225)
+....-+ .... + .+++.. ...+ +. + ....+. ..++++.++. .+..++.++.. .
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~--l~d~----~~-~------------~~~~~~~~vi~~~~~~~-i~~~l~~~l~~-~ 696 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLAT--LEDE----VD-F------------EVEDFNRRVITESFNRV-VCEELAKYLDP-T 696 (1123)
T ss_pred ccccccchhhhcchhhhhhhhcc--CcHH----Hh-h------------hHHHHHHHHhhHHHHHH-HHHHHHHHHhc-c
Confidence 0000000 0000 0 000000 0000 00 0 000000 0112222221 23344555532 3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCC--CCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCc-eEEEecchhccccCCCC
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANP--FFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCR-KIILSTNIAETAITIDD 636 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~--~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~r-KIILATNIAEtSITI~d 636 (1225)
.+|..|||+.+.++++.+.+.|.... ..+......+..+||..+. ..++++.+..+.. +|+++++++-||+++|+
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 46899999999999998888876421 1111122345568888764 4456666666654 79999999999999999
Q ss_pred eEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc---eEEEEecCH-HHHhcCCCCC--CCccc--cc
Q 000916 637 VVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA---GICYHLYSQ-LRAASLPDFQ--VPEIK--RI 708 (1225)
Q Consensus 637 V~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~---G~CyrLys~-~~~~~m~~~~--~PEI~--R~ 708 (1225)
|..||-.- ..-|+.-+.|+.||+.|..| -.+|.+|.- .-|+.+.++. .|.+. ..
T Consensus 775 v~~vVf~r------------------pvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~vg~~~~l~~~~~~~p~~~~~~~ 836 (1123)
T PRK11448 775 ICNLVFLR------------------RVRSRILYEQMLGRATRLCPEIGKTHFRIFDAVDIYEALESVTTMKPVVVNPNI 836 (1123)
T ss_pred ccEEEEec------------------CCCCHHHHHHHHhhhccCCccCCCceEEEEehHHHHHhccccccCCccccCCCC
Confidence 99999322 23578889999999999988 357777775 3455555433 45432 35
Q ss_pred ChhhHHHHH
Q 000916 709 PIEELCLQV 717 (1225)
Q Consensus 709 pL~~l~L~~ 717 (1225)
+|.+++-.+
T Consensus 837 ~l~~l~~~~ 845 (1123)
T PRK11448 837 SLEQLVNEL 845 (1123)
T ss_pred CHHHHHHHH
Confidence 566664433
No 96
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.60 E-value=2.5e-14 Score=148.83 Aligned_cols=153 Identities=24% Similarity=0.305 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEE
Q 000916 192 SFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKI 271 (1225)
Q Consensus 192 ~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~I 271 (1225)
.+|.++++.+.+++.++|.|+||||||+.+..+++..+... ...++++..|++..+.++.+++...... .+..+..-.
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~ 79 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLH 79 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEES
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccc-ccccccccc
Confidence 56889999999999999999999999999999999887654 4458999999999999999988665544 222232221
Q ss_pred eecc-------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccc--hhHHHHHHHH
Q 000916 272 RLES-------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRY--SDFMLAIIRD 342 (1225)
Q Consensus 272 R~es-------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~--tD~LL~lLk~ 342 (1225)
.... ....+..|+++|++.|++.+..... .+..+++|||||+|+.+.. .+.+-.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-------------~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~ 146 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-------------NISRLSLIVIDEAHHLSDETFRAMLKSILRR 146 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-------------TGTTESEEEEETHHHHHHTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccCcchhhcccccccc-------------ccccceeeccCcccccccccHHHHHHHHHHH
Confidence 1110 1123578999999999999986421 4566999999999986653 2333333333
Q ss_pred hCcCCCCceEEEEccccc
Q 000916 343 MLPSYPHLRLILMSATLD 360 (1225)
Q Consensus 343 ll~~~~~LKlILMSATld 360 (1225)
+...++.++|+||||+.
T Consensus 147 -~~~~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 147 -LKRFKNIQIILLSATLP 163 (169)
T ss_dssp -SHTTTTSEEEEEESSST
T ss_pred -hcCCCCCcEEEEeeCCC
Confidence 44445799999999997
No 97
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.56 E-value=1.2e-13 Score=166.44 Aligned_cols=305 Identities=18% Similarity=0.243 Sum_probs=198.4
Q ss_pred HHHhhcCCC--ChHHHHHHHHHHHcC----C--eEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHH
Q 000916 181 IVEERSKLP--ISSFKDVITSTVDSN----Q--VVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVA 252 (1225)
Q Consensus 181 ~~~~R~~LP--i~~~r~eIl~aI~~~----~--VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvA 252 (1225)
+.++...|| ....|+.+++-|... . .=+|.|+-|||||.-.-..++...- . +.+.....|+.|.|.+.+
T Consensus 252 ~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-~--G~Q~ALMAPTEILA~QH~ 328 (677)
T COG1200 252 LAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-A--GYQAALMAPTEILAEQHY 328 (677)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-c--CCeeEEeccHHHHHHHHH
Confidence 445556777 456666666666532 1 1267999999999766666655442 2 247888999999999999
Q ss_pred HHHHHHhCCccCCeEEEEEeec----------ccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEE
Q 000916 253 ERISVERGENIGDNIGYKIRLE----------SKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHII 322 (1225)
Q Consensus 253 eRVa~Erge~lG~~VGY~IR~e----------s~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVI 322 (1225)
+.+++-+ +.+|-.|++-+..- .-.+-.+.|++.|.-. ..|. -.+.++..||
T Consensus 329 ~~~~~~l-~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL-----iQd~-------------V~F~~LgLVI 389 (677)
T COG1200 329 ESLRKWL-EPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL-----IQDK-------------VEFHNLGLVI 389 (677)
T ss_pred HHHHHHh-hhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh-----hhcc-------------eeecceeEEE
Confidence 9886655 55676777655322 1224467999999753 3443 2688999999
Q ss_pred eccccccccchhHHHHHHHHhC-cCCC-CceEEEEcccccHHHHH-hhhCCCCeE---ecCCcccceeEEEehhhHHhhh
Q 000916 323 VDEIHERDRYSDFMLAIIRDML-PSYP-HLRLILMSATLDADRFS-QYFGGCPVI---QVPGFTYPVKSFYLEDVLSILK 396 (1225)
Q Consensus 323 vDEvHER~~~tD~LL~lLk~ll-~~~~-~LKlILMSATld~~~Fs-~yF~~~pvi---~I~gr~~pV~~~yLedil~~~~ 396 (1225)
|||=|.=++.- |..| .+.+ ..-+++||||.=+-.++ ..|++-.|- ..|.-.-||+++.+.+-
T Consensus 390 iDEQHRFGV~Q-------R~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~----- 457 (677)
T COG1200 390 IDEQHRFGVHQ-------RLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHE----- 457 (677)
T ss_pred EeccccccHHH-------HHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccc-----
Confidence 99999643322 2222 2334 56789999999666554 467754333 33433467777665320
Q ss_pred hccccccccccccCCCCCcchhhhhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccc
Q 000916 397 SAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVG 476 (1225)
Q Consensus 397 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~ 476 (1225)
.++.
T Consensus 458 ----------------------------------------~~~~------------------------------------ 461 (677)
T COG1200 458 ----------------------------------------RRPE------------------------------------ 461 (677)
T ss_pred ----------------------------------------cHHH------------------------------------
Confidence 0000
Q ss_pred hhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHH
Q 000916 477 DVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKIC 556 (1225)
Q Consensus 477 ~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~ 556 (1225)
+.+.+.+...
T Consensus 462 ---------------------------------v~e~i~~ei~------------------------------------- 471 (677)
T COG1200 462 ---------------------------------VYERIREEIA------------------------------------- 471 (677)
T ss_pred ---------------------------------HHHHHHHHHH-------------------------------------
Confidence 0000000000
Q ss_pred hcCCCCeEEEEcCCH--------HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchh
Q 000916 557 MDSEDGAILVFLPGW--------EDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIA 628 (1225)
Q Consensus 557 ~~~~~G~ILVFLpG~--------~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIA 628 (1225)
.+..+-|-+|=. ..+..+++.|.. . .+++.|-.+||.|+++++..|.+.|..|...|+|||.+.
T Consensus 472 ---~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~--~---~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 472 ---KGRQAYVVCPLIEESEKLELQAAEELYEELKS--F---LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred ---cCCEEEEEeccccccccchhhhHHHHHHHHHH--H---cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 011111222211 234455566652 2 235789999999999999999999999999999999999
Q ss_pred ccccCCCCeEEEEeCCCcccccccCC-CCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCH
Q 000916 629 ETAITIDDVVYVIDSGRMKEKSYDPY-NNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQ 691 (1225)
Q Consensus 629 EtSITI~dV~~VIDsG~~Ke~~yd~~-~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~ 691 (1225)
|-||++|+....| .+|+. -|+++| .|=+||.||.. +.+|+-+|..
T Consensus 544 EVGVdVPnATvMV--------Ie~AERFGLaQL----------HQLRGRVGRG~~qSyC~Ll~~~ 590 (677)
T COG1200 544 EVGVDVPNATVMV--------IENAERFGLAQL----------HQLRGRVGRGDLQSYCVLLYKP 590 (677)
T ss_pred EecccCCCCeEEE--------EechhhhhHHHH----------HHhccccCCCCcceEEEEEeCC
Confidence 9999999998877 45654 355544 59999999965 4999999963
No 98
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.53 E-value=1.9e-13 Score=173.90 Aligned_cols=101 Identities=22% Similarity=0.249 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcC----CCCCCceEEEecchhccccCCC
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKR----PPPGCRKIILSTNIAETAITID 635 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~----~p~g~rKIILATNIAEtSITI~ 635 (1225)
..+.|||-+++.+.+.++++.|+... ..++.|||.+...+|.+..+. +..+.-.|||||-+.|.||||+
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~-------~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKG-------PKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcC-------CCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 56899999999999999999998754 169999999999998776552 1345678999999999999996
Q ss_pred CeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc---ceEEEEe
Q 000916 636 DVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ---AGICYHL 688 (1225)
Q Consensus 636 dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~---~G~CyrL 688 (1225)
+..+| +...+-.|..||+||.+|.+ +|..|-.
T Consensus 512 -fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 512 -FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred -cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 55555 45667789999999999988 3555544
No 99
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.53 E-value=2.6e-13 Score=146.08 Aligned_cols=163 Identities=21% Similarity=0.212 Sum_probs=115.7
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhcc--CCccEEEEecchHHHHHHHHHHHHHHhCCccCCeE
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK--GETCKIVCTQPRRISATSVAERISVERGENIGDNI 267 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~--~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~V 267 (1225)
.+.+|.+.++.+.+++.++|+++||+|||..+..++++.+... ....+++++.|++..+.++++.+.. .+...+..+
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~-~~~~~~~~~ 100 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARK-LGKHTNLKV 100 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHH-HhccCCceE
Confidence 5788999999999999999999999999999888988887654 3557899999999999999886644 322223333
Q ss_pred EEEEeecc------cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccc--cchhHHHHH
Q 000916 268 GYKIRLES------KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERD--RYSDFMLAI 339 (1225)
Q Consensus 268 GY~IR~es------~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~--~~tD~LL~l 339 (1225)
+.-..... ....+..|++||++.|++.+.... ..+.++++|||||+|+-. -....+..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-------------~~~~~l~~lIvDE~h~~~~~~~~~~~~~~ 167 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK-------------LDLSKVKYLVLDEADRMLDMGFEDQIREI 167 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-------------CChhhCCEEEEeChHHhhccChHHHHHHH
Confidence 32111111 112367899999999999887653 367899999999999732 112223333
Q ss_pred HHHhCcCCCCceEEEEccccc--HHHHH-hhhC
Q 000916 340 IRDMLPSYPHLRLILMSATLD--ADRFS-QYFG 369 (1225)
Q Consensus 340 Lk~ll~~~~~LKlILMSATld--~~~Fs-~yF~ 369 (1225)
++. ..++.++++||||+. .+.+. .|++
T Consensus 168 ~~~---l~~~~~~~~~SAT~~~~~~~~~~~~~~ 197 (203)
T cd00268 168 LKL---LPKDRQTLLFSATMPKEVRDLARKFLR 197 (203)
T ss_pred HHh---CCcccEEEEEeccCCHHHHHHHHHHCC
Confidence 332 234789999999994 44544 3443
No 100
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.51 E-value=2.3e-12 Score=165.25 Aligned_cols=109 Identities=11% Similarity=0.047 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCC--CCceEEEecchhccccCCCC
Q 000916 559 SEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPP--GCRKIILSTNIAETAITIDD 636 (1225)
Q Consensus 559 ~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~--g~rKIILATNIAEtSITI~d 636 (1225)
.....+|||+...+.+..+.+.|.... .+.+..+||+|+..+|.++++.|.. |..+|+|||+++.+|+++..
T Consensus 491 ~~~~KvLVF~~~~~t~~~L~~~L~~~~------Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~ 564 (956)
T PRK04914 491 HRSEKVLVICAKAATALQLEQALRERE------GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQF 564 (956)
T ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhcc------CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCccc
Confidence 346799999999999999999995321 2778999999999999999888865 45889999999999999999
Q ss_pred eEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc---eEEEEecCH
Q 000916 637 VVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA---GICYHLYSQ 691 (1225)
Q Consensus 637 V~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~---G~CyrLys~ 691 (1225)
+.+||++.+ |-+...+.||.||+||-+. -.+|.+|.+
T Consensus 565 a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 565 ASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred ccEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEEccCC
Confidence 999998666 6677889999999999554 445555543
No 101
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.48 E-value=2.6e-12 Score=159.85 Aligned_cols=407 Identities=20% Similarity=0.233 Sum_probs=240.6
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhcc--------CCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEe
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSK--------GETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIR 272 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~--------~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR 272 (1225)
+.....+++|||||+|||----.-||+..-.+ -.+.+|++.-|-+.++-.+-.-+++ |-..+|-+|+=..+
T Consensus 322 l~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSk-Rla~~GI~V~ElTg 400 (1674)
T KOG0951|consen 322 LRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSK-RLAPLGITVLELTG 400 (1674)
T ss_pred hcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHh-hccccCcEEEEecc
Confidence 45678899999999999988777788765321 2356999999999876555443433 33566777765443
Q ss_pred ecccC---CCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccc----cccchhHHH-HHHHHhC
Q 000916 273 LESKG---GKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE----RDRYSDFML-AIIRDML 344 (1225)
Q Consensus 273 ~es~~---s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE----R~~~tD~LL-~lLk~ll 344 (1225)
-.... -..|.|++|||.-- ..+..... -+...+-|+.+||||+|- |+.--.-.. -..|+.-
T Consensus 401 D~~l~~~qieeTqVIV~TPEK~-DiITRk~g----------draY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~se 469 (1674)
T KOG0951|consen 401 DSQLGKEQIEETQVIVTTPEKW-DIITRKSG----------DRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSE 469 (1674)
T ss_pred cccchhhhhhcceeEEeccchh-hhhhcccC----------chhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhh
Confidence 32222 24799999999743 11111110 012455788999999984 443221111 1233333
Q ss_pred cCCCCceEEEEcccc-cHHHHHhhhCCC-CeEec---CCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhh
Q 000916 345 PSYPHLRLILMSATL-DADRFSQYFGGC-PVIQV---PGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTE 419 (1225)
Q Consensus 345 ~~~~~LKlILMSATl-d~~~Fs~yF~~~-pvi~I---~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~ 419 (1225)
......|+|.+|||+ |-+....|..-. +-+.. .-|.-|++..|.-- ++
T Consensus 470 s~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi---------------------------~e 522 (1674)
T KOG0951|consen 470 STEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGI---------------------------TE 522 (1674)
T ss_pred hcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEecc---------------------------cc
Confidence 445689999999999 555444433210 11111 11223333333210 00
Q ss_pred hhhhhhHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhh
Q 000916 420 ENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTAL 499 (1225)
Q Consensus 420 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~ 499 (1225)
+.|++-
T Consensus 523 -------------------------------------------k~~~~~------------------------------- 528 (1674)
T KOG0951|consen 523 -------------------------------------------KKPLKR------------------------------- 528 (1674)
T ss_pred -------------------------------------------CCchHH-------------------------------
Confidence 000000
Q ss_pred hhccccCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHH
Q 000916 500 QLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRD 579 (1225)
Q Consensus 500 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~ 579 (1225)
.+.++ +....++......+.||||+-.+.|..+.++
T Consensus 529 -----------~qamN---------------------------------e~~yeKVm~~agk~qVLVFVHsRkET~ktA~ 564 (1674)
T KOG0951|consen 529 -----------FQAMN---------------------------------EACYEKVLEHAGKNQVLVFVHSRKETAKTAR 564 (1674)
T ss_pred -----------HHHHH---------------------------------HHHHHHHHHhCCCCcEEEEEEechHHHHHHH
Confidence 00000 0001122222345788888888888777766
Q ss_pred HHHcC------------------------------CCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhc
Q 000916 580 RLLAN------------------------------PFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAE 629 (1225)
Q Consensus 580 ~L~~~------------------------------~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAE 629 (1225)
.|+.. +...+.-++.+...|++|...++..+-+-+..|.++|.+||-..+
T Consensus 565 aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatla 644 (1674)
T KOG0951|consen 565 AIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLA 644 (1674)
T ss_pred HHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhh
Confidence 65411 111122346788899999999999998888999999999999999
Q ss_pred cccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc-----ceEEEEecCHHHH-hc-CCCCCC
Q 000916 630 TAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-----AGICYHLYSQLRA-AS-LPDFQV 702 (1225)
Q Consensus 630 tSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-----~G~CyrLys~~~~-~~-m~~~~~ 702 (1225)
.|+..|.=.++|- -..+|||..|. ...+|.-...||.|||||-+ .|+-..=+++..| -+ |.+.-+
T Consensus 645 wgvnlpahtViik----gtqvy~pekg~----w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLp 716 (1674)
T KOG0951|consen 645 WGVNLPAHTVIIK----GTQVYDPEKGR----WTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLP 716 (1674)
T ss_pred hhcCCCcceEEec----CccccCcccCc----cccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCC
Confidence 9999999877772 23479998873 23478889999999999954 4777766776443 33 333322
Q ss_pred CcccccCh------hhHHHHHhhcCCCCChhhhh-----h-h-------------cCCCCc----HHHHHHHHHHHHHcC
Q 000916 703 PEIKRIPI------EELCLQVKLLDPNCNIEDFL-----Q-K-------------TLDPPV----SVTIRNAIIVLQDIG 753 (1225)
Q Consensus 703 PEI~R~pL------~~l~L~~K~l~~~~~i~~fL-----~-~-------------~ldPP~----~~av~~Al~~L~~lg 753 (1225)
-|-++++= .+++|-++.+. +-.++| . + +.|++- .+-|..|...|.+.|
T Consensus 717 iesq~~~rl~d~lnaeiv~Gv~~~~---d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~ 793 (1674)
T KOG0951|consen 717 IESQFVSRLADCLNAEIVLGVRSAR---DAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAG 793 (1674)
T ss_pred ChHHHHHHhhhhhhhhhhcchhhHH---HHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcC
Confidence 23333221 12233222221 111222 1 1 112221 256788999999999
Q ss_pred CCCCCC-----cccccccccccccCch
Q 000916 754 ALSLDE-----KVTELGEKLGCLSVHP 775 (1225)
Q Consensus 754 ALd~~e-----~LT~LG~~La~LPvdp 775 (1225)
.+--+. ..|+||+.-+..-+.-
T Consensus 794 li~yd~~s~~~~~telg~ias~yyi~~ 820 (1674)
T KOG0951|consen 794 LIKYDRKSGAIQATELGRIASSYYITH 820 (1674)
T ss_pred ccccccccCcccchhhccccceeeeec
Confidence 885432 6899999999888753
No 102
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=99.47 E-value=5.8e-14 Score=120.71 Aligned_cols=59 Identities=51% Similarity=0.899 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEec
Q 000916 29 RIRISQILDGFLASKDEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCK 87 (1225)
Q Consensus 29 ~~~~~~~l~~f~~s~~~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~k 87 (1225)
+++|.++|++|+++++++|+|||+|+++||+.||++|+++||+|+|+|.|.+|+|+|||
T Consensus 1 ~i~i~~~i~~F~~~~~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~S~G~g~~R~v~v~K 59 (59)
T cd06007 1 RIAINKALEDFRASDNEEYEFPSSLTNHERAVIHRLCRKLGLKSKSKGKGSNRRLSVYK 59 (59)
T ss_pred CccHHHHHHHHHcCcccEEEcCCCCCHHHHHHHHHHHHHcCCCceeecCCCCeEEEEeC
Confidence 47899999999999999999999999999999999999999999999999999999987
No 103
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.47 E-value=3.6e-12 Score=153.66 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=83.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEE
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVY 639 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~ 639 (1225)
....+|||....+....+...+...+ . +..+.+..+..+|..+++.++.|..++|+++-|+..|++||++..
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~-------~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~ 353 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPG-------I-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADV 353 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCC-------c-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcE
Confidence 45689999999999999998886542 2 677899999999999999999988999999999999999999999
Q ss_pred EEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc
Q 000916 640 VIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA 682 (1225)
Q Consensus 640 VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~ 682 (1225)
+| +..-.-|+..+.||.||.=|..+
T Consensus 354 ~i------------------~~~~t~S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 354 LI------------------ILRPTGSRRLFIQRLGRGLRPAE 378 (442)
T ss_pred EE------------------EeCCCCcHHHHHHHhhhhccCCC
Confidence 99 22235688899999999999433
No 104
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.46 E-value=1.3e-12 Score=147.58 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEE
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVY 639 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~ 639 (1225)
..|-=+|++-++++++++.=.|...+ +....+|++|-..|+-.|-+.--.|..-||+|||-.-.|++-|+|+|
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~~G-------i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRF 326 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEIAG-------IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRF 326 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhhcC-------cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeE
Confidence 35777999999999999988886544 56778999999999999998888899999999999999999999999
Q ss_pred EEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHHHHh
Q 000916 640 VIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQLRAA 695 (1225)
Q Consensus 640 VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~~~~ 695 (1225)
||. ||+. -+-|-|-|-.|||||-+. ..|=-.|++++-+
T Consensus 327 ViH--------W~~~----------qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 327 VIH--------WSPS----------QNLAGYYQESGRAGRDGKRSYCRLYYSRQDKN 365 (641)
T ss_pred EEe--------cCch----------hhhHHHHHhccccccCCCccceeeeecccchH
Confidence 996 4332 345788899999999775 7776667876543
No 105
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=1e-11 Score=155.65 Aligned_cols=134 Identities=19% Similarity=0.114 Sum_probs=97.5
Q ss_pred hhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCcc
Q 000916 184 ERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 184 ~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
.|+.|-...+--+++-++.=|+=-|....||+|||..+..+++..++. |. .+.|.-|+|.+|.+.++.+ ....+.+
T Consensus 75 ~~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~-G~--~V~VvTpn~yLA~qd~e~m-~~l~~~l 150 (896)
T PRK13104 75 SLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS-GR--GVHIVTVNDYLAKRDSQWM-KPIYEFL 150 (896)
T ss_pred HHHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc-CC--CEEEEcCCHHHHHHHHHHH-HHHhccc
Confidence 466888888888999998888888899999999999888888866653 22 4778889999998888754 4455778
Q ss_pred CCeEEEEEeeccc----CCCCccEEEEccHHH-HHHHHhcCcccccccCCCccccccCCccEEEeccccc
Q 000916 264 GDNIGYKIRLESK----GGKHSSIVFCTNGVL-LRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE 328 (1225)
Q Consensus 264 G~~VGY~IR~es~----~s~~t~I~f~T~GvL-Lr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE 328 (1225)
|-+||.-+...+. ..-.+.|+|+|+|.| +..|..+-. . + .-+....++.++||||||.
T Consensus 151 GLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~-~----~--~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMA-F----S--LTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred CceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCc-c----c--hHhhhccccceEEeccHhh
Confidence 8899976543221 112578999999999 766654310 0 0 0001236899999999993
No 106
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.41 E-value=2e-11 Score=154.79 Aligned_cols=285 Identities=22% Similarity=0.277 Sum_probs=198.5
Q ss_pred HHcCCeE--EEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccC-
Q 000916 201 VDSNQVV--LISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKG- 277 (1225)
Q Consensus 201 I~~~~Vv--II~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~- 277 (1225)
+.+.++. +|||+-|=|||.-.--...-... .+.+|.+..||-+.|-+-.+.+.+ |-..++-.|+--=||-+..
T Consensus 610 M~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---~GKQVAvLVPTTlLA~QHy~tFke-RF~~fPV~I~~LSRF~s~kE 685 (1139)
T COG1197 610 MESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---DGKQVAVLVPTTLLAQQHYETFKE-RFAGFPVRIEVLSRFRSAKE 685 (1139)
T ss_pred hccCCcchheeecCcCCcHHHHHHHHHHHHhc---CCCeEEEEcccHHhHHHHHHHHHH-HhcCCCeeEEEecccCCHHH
Confidence 3455554 79999999999765554444432 235899999999999999998854 4456666676655665422
Q ss_pred ---------CCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCC
Q 000916 278 ---------GKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYP 348 (1225)
Q Consensus 278 ---------s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~ 348 (1225)
.-+..|++.|.-.| ..+ -.+.++..+||||=|.=++.-- ..||. .+.
T Consensus 686 ~~~il~~la~G~vDIvIGTHrLL----~kd--------------v~FkdLGLlIIDEEqRFGVk~K---EkLK~---Lr~ 741 (1139)
T COG1197 686 QKEILKGLAEGKVDIVIGTHRLL----SKD--------------VKFKDLGLLIIDEEQRFGVKHK---EKLKE---LRA 741 (1139)
T ss_pred HHHHHHHHhcCCccEEEechHhh----CCC--------------cEEecCCeEEEechhhcCccHH---HHHHH---Hhc
Confidence 22458999997433 322 2689999999999996444221 12333 357
Q ss_pred CceEEEEcccccHHHHHhhhCC---CCeEec-CCcccceeEEEehhhHHhhhhccccccccccccCCCCCcchhhhhhhh
Q 000916 349 HLRLILMSATLDADRFSQYFGG---CPVIQV-PGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKST 424 (1225)
Q Consensus 349 ~LKlILMSATld~~~Fs~yF~~---~pvi~I-~gr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 424 (1225)
+.-|+=||||.=+-.+.-=..| -.+|.. |-..+||++|..+- + ...
T Consensus 742 ~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~-------------d-----------------~~~ 791 (1139)
T COG1197 742 NVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEY-------------D-----------------DLL 791 (1139)
T ss_pred cCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecC-------------C-----------------hHH
Confidence 8899999999743333211111 223433 45668888876541 0 000
Q ss_pred hHHHHHhhccchhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccc
Q 000916 425 LDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQ 504 (1225)
Q Consensus 425 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~ 504 (1225)
+.
T Consensus 792 ir------------------------------------------------------------------------------ 793 (1139)
T COG1197 792 IR------------------------------------------------------------------------------ 793 (1139)
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred cCchhHHHHHHHHhhhhhhhhHHHHHHHhhhhccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcC
Q 000916 505 ENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLAN 584 (1225)
Q Consensus 505 ~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~ 584 (1225)
+++++.| ..+|.|-.-.|-.++|+++.+.|+..
T Consensus 794 --------------------------------------------eAI~REl---~RgGQvfYv~NrV~~Ie~~~~~L~~L 826 (1139)
T COG1197 794 --------------------------------------------EAILREL---LRGGQVFYVHNRVESIEKKAERLREL 826 (1139)
T ss_pred --------------------------------------------HHHHHHH---hcCCEEEEEecchhhHHHHHHHHHHh
Confidence 1111222 25788888889999999999999874
Q ss_pred CCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccC-CCCccccccc
Q 000916 585 PFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDP-YNNVSTLQSS 663 (1225)
Q Consensus 585 ~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~-~~~~s~L~~~ 663 (1225)
.+...|...||.|+..+..+|+..|-.|.-.|+|||-|.||||+||++.-.|= .++ .-|++
T Consensus 827 -----VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~AD~fGLs----- 888 (1139)
T COG1197 827 -----VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ERADKFGLA----- 888 (1139)
T ss_pred -----CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------eccccccHH-----
Confidence 34578999999999999999999999999999999999999999999988771 121 12444
Q ss_pred ccCHhhHHhhcCccCCCcc-eEEEEecCH
Q 000916 664 WVSKASAKQRAGRAGRCQA-GICYHLYSQ 691 (1225)
Q Consensus 664 wiSkasa~QR~GRAGR~~~-G~CyrLys~ 691 (1225)
..-|=+||.||... |+||-||..
T Consensus 889 -----QLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 889 -----QLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred -----HHHHhccccCCccceEEEEEeecC
Confidence 45599999999765 999999984
No 107
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=1.7e-11 Score=153.14 Aligned_cols=106 Identities=21% Similarity=0.193 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCC---CC
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITI---DD 636 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI---~d 636 (1225)
.+-+||||+.+.+..+.+.+.|.+.. +..-.||+.+...+...|-....+|. |+||||+|.+|++| ++
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~g-------i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~ 509 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEAG-------IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPG 509 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHCC-------CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcc
Confidence 56799999999999999999998754 45668999999888888877777775 99999999999999 59
Q ss_pred eE-----EEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecCHH
Q 000916 637 VV-----YVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYSQL 692 (1225)
Q Consensus 637 V~-----~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys~~ 692 (1225)
|. +||.+.+ +-|+-...||+|||||.+. |.+.-++|-+
T Consensus 510 V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 510 VKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred hhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 99 9998776 5677778899999999875 9998777753
No 108
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.40 E-value=7.6e-12 Score=131.54 Aligned_cols=165 Identities=22% Similarity=0.235 Sum_probs=117.5
Q ss_pred CCChHHHHHHHHHHHcC-CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCe
Q 000916 188 LPISSFKDVITSTVDSN-QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDN 266 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~~~-~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~ 266 (1225)
.+...+|.+++..+.+. ++++|.|+||||||+.+..++++...... ..+++++.|++..+.+..+++........+..
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE
Confidence 34567888999999888 99999999999999999999998865432 45899999999999999988876554321111
Q ss_pred EEEEEeecc-----cCCC-CccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccc--cchhHHHH
Q 000916 267 IGYKIRLES-----KGGK-HSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERD--RYSDFMLA 338 (1225)
Q Consensus 267 VGY~IR~es-----~~s~-~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~--~~tD~LL~ 338 (1225)
+.+--.... .... ...++++|++.|.+.+.... .....+.+|||||+|... ...+.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-------------~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 152 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-------------LELSNVDLVILDEAHRLLDGGFGDQLEK 152 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-------------cCHhHCCEEEEECHHHHhcCCcHHHHHH
Confidence 111111110 0122 23899999999999887642 256788999999999866 34444444
Q ss_pred HHHHhCcCCCCceEEEEcccc--cHHHHHhhhC
Q 000916 339 IIRDMLPSYPHLRLILMSATL--DADRFSQYFG 369 (1225)
Q Consensus 339 lLk~ll~~~~~LKlILMSATl--d~~~Fs~yF~ 369 (1225)
+++.+ .+..++|+||||+ +.+.+...+.
T Consensus 153 ~~~~~---~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 153 LLKLL---PKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred HHHhC---CccceEEEEecCCchhHHHHHHHhc
Confidence 55443 4678999999999 5666655443
No 109
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.38 E-value=6.2e-12 Score=124.44 Aligned_cols=138 Identities=30% Similarity=0.301 Sum_probs=100.6
Q ss_pred CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccC------C
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKG------G 278 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~------s 278 (1225)
+.++|.|+||+|||+++..++.+.... +...+++++.|++..+.+..+++...... +..+.+-....... .
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLS 77 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhc
Confidence 357899999999999999999887654 33458999999999999999988776643 45566655544433 4
Q ss_pred CCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEccc
Q 000916 279 KHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSAT 358 (1225)
Q Consensus 279 ~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSAT 358 (1225)
....|++||.+.+.+.+.... .....+++|||||+|.-.-....... ........+..++++||||
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~-------------~~~~~~~~iiiDE~h~~~~~~~~~~~-~~~~~~~~~~~~~i~~saT 143 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLK-------------LSLKKLDLLILDEAHRLLNQGFGLLG-LKILLKLPKDRQVLLLSAT 143 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCC-------------cchhcCCEEEEeCHHHHhhcchHHHH-HHHHhhCCccceEEEEecc
Confidence 578999999999998887542 14567899999999953332222211 2233334567899999999
Q ss_pred c
Q 000916 359 L 359 (1225)
Q Consensus 359 l 359 (1225)
+
T Consensus 144 p 144 (144)
T cd00046 144 P 144 (144)
T ss_pred C
Confidence 5
No 110
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.34 E-value=1.5e-11 Score=151.48 Aligned_cols=87 Identities=15% Similarity=0.196 Sum_probs=74.9
Q ss_pred eEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHh
Q 000916 593 FVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQ 672 (1225)
Q Consensus 593 ~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~Q 672 (1225)
+-+...|++++.++|+-|-..++.|..+|++||.....|+..|-.+++|-.- .......++..|+|
T Consensus 523 ~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP--------------~~g~~~l~~~~YkQ 588 (1008)
T KOG0950|consen 523 YGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAP--------------YVGREFLTRLEYKQ 588 (1008)
T ss_pred ccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCC--------------ccccchhhhhhHHh
Confidence 5677889999999999998889999999999999999999999999999432 24455788999999
Q ss_pred hcCccCCCcc---eEEEEecCHHH
Q 000916 673 RAGRAGRCQA---GICYHLYSQLR 693 (1225)
Q Consensus 673 R~GRAGR~~~---G~CyrLys~~~ 693 (1225)
+.|||||++- |.|+-.+.+..
T Consensus 589 M~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 589 MVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred hhhhhhhcccccCcceEEEeeccc
Confidence 9999999853 88999987643
No 111
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=99.34 E-value=1.8e-12 Score=111.97 Aligned_cols=58 Identities=29% Similarity=0.524 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhcCC-CceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEec
Q 000916 30 IRISQILDGFLASK-DEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCK 87 (1225)
Q Consensus 30 ~~~~~~l~~f~~s~-~~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~k 87 (1225)
..+++.|++|++++ .++++|||+|+++||+.||++|+++||+|+|+|.|.+|+++|+|
T Consensus 2 ~~~~~~i~~F~~s~~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~S~G~g~~R~v~v~k 60 (60)
T cd02640 2 NDYRQIIQNYAHSDDIRDMVFSPEFSKEERALIHQIAQKYGLKSRSYGSGNDRYLVISK 60 (60)
T ss_pred hhHHHHHHHHHcCCccceEEcCCCCCHHHHHHHHHHHHHcCCceeeEeCCCCeEEEEeC
Confidence 35789999999998 89999999999999999999999999999999999999999975
No 112
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.33 E-value=2.5e-11 Score=154.64 Aligned_cols=116 Identities=22% Similarity=0.193 Sum_probs=100.1
Q ss_pred HHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCC
Q 000916 555 ICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITI 634 (1225)
Q Consensus 555 I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI 634 (1225)
+-.....+.++|++..+.+.+.+...|.... +....+|++|+..+|..|-..+-.+..+||+||=..-.||+-
T Consensus 479 ~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~-------~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK 551 (941)
T KOG0351|consen 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLG-------KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK 551 (941)
T ss_pred hhhcCCCCCeEEEeCCcchHHHHHHHHHHhc-------hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC
Confidence 3334567899999999999999999998754 556789999999999999999989999999999999999999
Q ss_pred CCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHHHh
Q 000916 635 DDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLRAA 695 (1225)
Q Consensus 635 ~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~~~ 695 (1225)
+||++||.+++.| |-.+|-|=.|||||-+ +-.|.-+|+-.++.
T Consensus 552 ~DVR~ViH~~lPk------------------s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~ 595 (941)
T KOG0351|consen 552 PDVRFVIHYSLPK------------------SFEGYYQEAGRAGRDGLPSSCVLLYGYADIS 595 (941)
T ss_pred CceeEEEECCCch------------------hHHHHHHhccccCcCCCcceeEEecchhHHH
Confidence 9999999999854 4456779999999965 59999999876553
No 113
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=1.6e-10 Score=145.07 Aligned_cols=133 Identities=19% Similarity=0.150 Sum_probs=90.9
Q ss_pred hhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHH-HHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCc
Q 000916 184 ERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLL-EHIWSKGETCKIVCTQPRRISATSVAERISVERGEN 262 (1225)
Q Consensus 184 ~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~IL-e~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~ 262 (1225)
.|+.|-...+--+++-+|.=|+=-|....||+|||......++ .... |. .+-+.-|++.+|...++-+.. ....
T Consensus 74 ~~R~lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~--G~--~V~IvTpn~yLA~rd~e~~~~-l~~~ 148 (830)
T PRK12904 74 SKRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALT--GK--GVHVVTVNDYLAKRDAEWMGP-LYEF 148 (830)
T ss_pred HHHHhCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHc--CC--CEEEEecCHHHHHHHHHHHHH-HHhh
Confidence 3556666677777998887777778899999999987766664 3332 22 245667999988888885543 4467
Q ss_pred cCCeEEEEEeecccC----CCCccEEEEccHHH-HHHHHhcCcccccccCCCccccccCCccEEEeccccc
Q 000916 263 IGDNIGYKIRLESKG----GKHSSIVFCTNGVL-LRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE 328 (1225)
Q Consensus 263 lG~~VGY~IR~es~~----s~~t~I~f~T~GvL-Lr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE 328 (1225)
+|-+||.-+...+.. .-.+.|+|+|+|-| +..|... .. .+ .-+..++++.++|||||+.
T Consensus 149 LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~-~~----~~--~~~~~~r~~~~aIvDEaDs 212 (830)
T PRK12904 149 LGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDN-MV----FS--LEERVQRGLNYAIVDEVDS 212 (830)
T ss_pred cCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcc-cc----cc--hhhhcccccceEEEechhh
Confidence 888998766432211 12468999999999 6666532 10 00 0012478899999999994
No 114
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.23 E-value=6.4e-11 Score=126.60 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=106.3
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHH---HHHHHhCCcc
Q 000916 187 KLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAE---RISVERGENI 263 (1225)
Q Consensus 187 ~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAe---RVa~Erge~l 263 (1225)
.-|..-+.+-|-++|..-+| +..+..|-|||..+..--|...-.....+.++|..-+|..|.++.. |+++.+- .+
T Consensus 63 ehpsevqhecipqailgmdv-lcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP-~v 140 (387)
T KOG0329|consen 63 EHPSEVQHECIPQAILGMDV-LCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMP-SV 140 (387)
T ss_pred CCchHhhhhhhhHHhhcchh-heecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCC-Cc
Confidence 45666667778888876655 4689999999988877777766554556889999999999999864 5555552 12
Q ss_pred CCeEEE---EEeeccc-CCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHH
Q 000916 264 GDNIGY---KIRLESK-GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAI 339 (1225)
Q Consensus 264 G~~VGY---~IR~es~-~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~l 339 (1225)
...|=| .|.-+.. .....+|++.|||.++....+..+ .|+++.|+|+||++..--..| +
T Consensus 141 kvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l-------------~lk~vkhFvlDEcdkmle~lD----M 203 (387)
T KOG0329|consen 141 KVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSL-------------NLKNVKHFVLDECDKMLEQLD----M 203 (387)
T ss_pred eEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccC-------------chhhcceeehhhHHHHHHHHH----H
Confidence 223322 3332221 123568999999999998887653 799999999999874211111 1
Q ss_pred HHH---hCcCC-CCceEEEEcccccHH
Q 000916 340 IRD---MLPSY-PHLRLILMSATLDAD 362 (1225)
Q Consensus 340 Lk~---ll~~~-~~LKlILMSATld~~ 362 (1225)
-|+ +.+.. .+-++..+|||+.-+
T Consensus 204 rRDvQEifr~tp~~KQvmmfsatlske 230 (387)
T KOG0329|consen 204 RRDVQEIFRMTPHEKQVMMFSATLSKE 230 (387)
T ss_pred HHHHHHHhhcCcccceeeeeeeecchh
Confidence 222 22233 456888999999433
No 115
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=99.21 E-value=2.6e-11 Score=105.20 Aligned_cols=58 Identities=26% Similarity=0.575 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhcCCC-ceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEec
Q 000916 30 IRISQILDGFLASKD-EVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCK 87 (1225)
Q Consensus 30 ~~~~~~l~~f~~s~~-~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~k 87 (1225)
..+.++|.+|+++++ .+++|||+|++.||++||++|+++||+|+|.|.|++|+|+|+|
T Consensus 2 ~~~~~~i~~F~~~~~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~S~G~g~~R~v~v~k 60 (60)
T cd02641 2 KHLKAMVKAFMKDPKATELEFPPTLSSHDRLLVHELAEELGLRHESTGEGSDRVITVSK 60 (60)
T ss_pred hhHHHHHHHHHcCCCcCcEECCCCCCHHHHHHHHHHHHHcCCceEeeCCCCceEEEeeC
Confidence 357899999999986 9999999999999999999999999999999999999999986
No 116
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.20 E-value=1e-10 Score=117.87 Aligned_cols=133 Identities=21% Similarity=0.296 Sum_probs=91.1
Q ss_pred HcCCeEEEEccCCCchhch-HHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecc-cCCC
Q 000916 202 DSNQVVLISGETGCGKTTQ-VPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLES-KGGK 279 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQ-vPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es-~~s~ 279 (1225)
++++..+|.-.+|+|||+. +|+++-|.. .+ ..++++..|+|+.|-.+++.+ . |..+.|+...-. ....
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i-~~--~~rvLvL~PTRvva~em~~aL----~---~~~~~~~t~~~~~~~~g 71 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAI-KR--RLRVLVLAPTRVVAEEMYEAL----K---GLPVRFHTNARMRTHFG 71 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHH-HT--T--EEEEESSHHHHHHHHHHT----T---TSSEEEESTTSS----S
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHH-Hc--cCeEEEecccHHHHHHHHHHH----h---cCCcccCceeeeccccC
Confidence 3577889999999999998 566665554 33 358999999999776666554 1 334666644332 2335
Q ss_pred CccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccc
Q 000916 280 HSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATL 359 (1225)
Q Consensus 280 ~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATl 359 (1225)
++-|.+||.+.+.+.+... ..+.+|++||+||+|--|..+=...+.+++.-.. ...++|+||||.
T Consensus 72 ~~~i~vMc~at~~~~~~~p--------------~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATP 136 (148)
T PF07652_consen 72 SSIIDVMCHATYGHFLLNP--------------CRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATP 136 (148)
T ss_dssp SSSEEEEEHHHHHHHHHTS--------------SCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-
T ss_pred CCcccccccHHHHHHhcCc--------------ccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCC
Confidence 6679999999999998874 2678999999999998777776777777776443 457999999996
No 117
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.17 E-value=3.2e-10 Score=128.47 Aligned_cols=107 Identities=17% Similarity=0.242 Sum_probs=93.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEE
Q 000916 562 GAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVI 641 (1225)
Q Consensus 562 G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VI 641 (1225)
...+||+.+..|+..|.+++.+.. ...|.++.||+..-+.|++.-++.+.++..|.++||++|.++|+|-++-|||
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkg----g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKG----GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcC----CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEE
Confidence 456899999999999999887653 3569999999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecC
Q 000916 642 DSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYS 690 (1225)
Q Consensus 642 DsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys 690 (1225)
+.-+ |-.|.+|.+|.||.||... |..+.|..
T Consensus 582 nvtl------------------pd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 582 NVTL------------------PDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred EEec------------------CcccchhhhhhhccchhhhcceeEEEee
Confidence 8555 5567788999999999654 88887764
No 118
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=3.3e-09 Score=133.20 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=90.7
Q ss_pred hhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCcc
Q 000916 184 ERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 184 ~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
.|+.|-...+--+++-.|.=|+=-|....||.|||..+-.+++-.+.. |. .+.|.-|.+.+|...++.+..- -+.+
T Consensus 75 a~R~lgm~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~-g~--~VhIvT~ndyLA~RD~e~m~~l-~~~l 150 (908)
T PRK13107 75 SKRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT-GK--GVHVITVNDYLARRDAENNRPL-FEFL 150 (908)
T ss_pred HHHHhCCCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhc-CC--CEEEEeCCHHHHHHHHHHHHHH-HHhc
Confidence 355677767777799998888888889999999999887777766543 22 2667778888877777755433 3557
Q ss_pred CCeEEEEEeecc---cC-CCCccEEEEccHHH-HHHHHhcCcccccccCCCccccccCCccEEEecccc
Q 000916 264 GDNIGYKIRLES---KG-GKHSSIVFCTNGVL-LRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH 327 (1225)
Q Consensus 264 G~~VGY~IR~es---~~-s~~t~I~f~T~GvL-Lr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvH 327 (1225)
|-+||..+..-+ +. .=++.|+|+|+|-| +..|... +. .+ .-+....++.++|||||+
T Consensus 151 Glsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdn-m~----~~--~~~~vqr~~~~aIvDEvD 212 (908)
T PRK13107 151 GLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDN-MA----FS--PQERVQRPLHYALIDEVD 212 (908)
T ss_pred CCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhcc-Cc----cc--hhhhhccccceeeecchh
Confidence 888886543221 11 12578999999998 6555432 10 00 001245788999999998
No 119
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.13 E-value=1.7e-09 Score=120.67 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecch
Q 000916 548 IEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNI 627 (1225)
Q Consensus 548 i~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNI 627 (1225)
|+++...|..+-.+..=+|++-+..|.+++...|+.++ +..-.+|+.|.++++..+-+.--.|...|||||-.
T Consensus 304 ~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~g-------i~a~~yha~lep~dks~~hq~w~a~eiqvivatva 376 (695)
T KOG0353|consen 304 IEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHG-------IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVA 376 (695)
T ss_pred HHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcC-------ccccccccccCccccccccccccccceEEEEEEee
Confidence 44444455444333344667778999999999998775 55667899999999999988888999999999999
Q ss_pred hccccCCCCeEEEEeCCCcc--ccccc
Q 000916 628 AETAITIDDVVYVIDSGRMK--EKSYD 652 (1225)
Q Consensus 628 AEtSITI~dV~~VIDsG~~K--e~~yd 652 (1225)
.-.||+-|||+|||.--+.| |+.|-
T Consensus 377 fgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 377 FGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred ecccCCCCCeeEEEecccchhHHHHHH
Confidence 99999999999999988876 33444
No 120
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.13 E-value=2.1e-10 Score=113.71 Aligned_cols=104 Identities=25% Similarity=0.341 Sum_probs=92.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEE
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVY 639 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~ 639 (1225)
.++.+|||++..+.++.+.+.|... ...+..+||+++..++..+++.+..|..+|+++|+.++.|++++++..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~ 99 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSV 99 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCE
Confidence 5789999999999999999998752 267999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEe
Q 000916 640 VIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHL 688 (1225)
Q Consensus 640 VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrL 688 (1225)
||-.+. |.+...+.|+.||+||.+ .|.|+.+
T Consensus 100 vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 100 VINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEeCC------------------CCCHHHheecccccccCCCCceEEeC
Confidence 995544 778889999999999987 5888753
No 121
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=99.06 E-value=3.4e-10 Score=97.84 Aligned_cols=57 Identities=28% Similarity=0.513 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhcCCCceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEec
Q 000916 30 IRISQILDGFLASKDEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCK 87 (1225)
Q Consensus 30 ~~~~~~l~~f~~s~~~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~k 87 (1225)
..|++.|++|+.++...+.||| |++++|++||++|..+||+|+|.|+|.+|+++|+|
T Consensus 2 ~~i~~~i~~F~~~~~~~~~fpp-m~~~~R~~vH~lA~~~~L~S~S~G~g~~R~v~v~k 58 (58)
T cd02646 2 EDIKDEIEAFLLDSRDSLSFPP-MDKHGRKTIHKLANCYNLKSKSRGKGKKRFVTVTK 58 (58)
T ss_pred hHHHHHHHHHHhCCCceEecCC-CCHHHHHHHHHHHHHcCCcccccccCCceEEEEEC
Confidence 3689999999999999999999 99999999999999999999999999999999986
No 122
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.00 E-value=1.2e-07 Score=122.92 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCC---CCCceEEE
Q 000916 547 LIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPP---PGCRKIIL 623 (1225)
Q Consensus 547 Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p---~g~rKIIL 623 (1225)
++..+|..+.. .+..||||.--..-+..+.+.|...+ +..+.+||+++..+|..+++.|. .+..-++|
T Consensus 475 lLdkLL~~Lk~--~g~KVLIFSQft~~LdiLed~L~~~g-------~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLL 545 (1033)
T PLN03142 475 LLDKLLPKLKE--RDSRVLIFSQMTRLLDILEDYLMYRG-------YQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLL 545 (1033)
T ss_pred HHHHHHHHHHh--cCCeEEeehhHHHHHHHHHHHHHHcC-------CcEEEECCCCCHHHHHHHHHHhccccCCceEEEE
Confidence 44555555432 45789999776555555656665432 56788999999999988877663 34456789
Q ss_pred ecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc---ceEEEEecCHHH
Q 000916 624 STNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ---AGICYHLYSQLR 693 (1225)
Q Consensus 624 ATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~---~G~CyrLys~~~ 693 (1225)
||..+-.||++....+||- ||+ |=+.+...|+.|||-|-+ +=.+|||+++..
T Consensus 546 STrAGGlGINLt~Ad~VIi--------yD~----------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 546 STRAGGLGINLATADIVIL--------YDS----------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred eccccccCCchhhCCEEEE--------eCC----------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 9999999999999999995 443 334556678888887754 357899998744
No 123
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.98 E-value=4.7e-08 Score=123.98 Aligned_cols=98 Identities=20% Similarity=0.183 Sum_probs=69.0
Q ss_pred EEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHH-------hcC-------------------CCCCC
Q 000916 565 LVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKV-------FKR-------------------PPPGC 618 (1225)
Q Consensus 565 LVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~v-------F~~-------------------~p~g~ 618 (1225)
||=+...+....++..|...... ....+.+..+||.-+-..|..+ +.+ +..+.
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~-~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAE-EKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccc-cCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 67778888888888888764321 2245788999999866554332 222 22467
Q ss_pred ceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceE
Q 000916 619 RKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGI 684 (1225)
Q Consensus 619 rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~ 684 (1225)
..|||||.|.|.|++|+ ...+| +.+.+-.+..||+||.-|.+...
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhcccccccCC
Confidence 79999999999999995 33333 23556678899999999977543
No 124
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.97 E-value=5.3e-10 Score=101.96 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=66.1
Q ss_pred eEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHh
Q 000916 593 FVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQ 672 (1225)
Q Consensus 593 ~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~Q 672 (1225)
+.+..+||.++..++.++++.+..|..+|++||++++.||+++++.+||..+. +-|...+.|
T Consensus 8 ~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~~Q 69 (78)
T PF00271_consen 8 IKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEYIQ 69 (78)
T ss_dssp SSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHHHH
Confidence 67999999999999999999999999999999999999999999999998776 668889999
Q ss_pred hcCccCCCc
Q 000916 673 RAGRAGRCQ 681 (1225)
Q Consensus 673 R~GRAGR~~ 681 (1225)
|.||+||.+
T Consensus 70 ~~GR~~R~g 78 (78)
T PF00271_consen 70 RIGRAGRIG 78 (78)
T ss_dssp HHTTSSTTT
T ss_pred HhhcCCCCC
Confidence 999999953
No 125
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.96 E-value=1.9e-09 Score=135.12 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=101.1
Q ss_pred HHHHHHHHhc-CCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecch
Q 000916 549 EQLLRKICMD-SEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNI 627 (1225)
Q Consensus 549 ~~ll~~I~~~-~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNI 627 (1225)
..++..|... ..+..+|||+++...++.+.+.|...+ +.+..+||.++..+|.+++..++.|...|+||||+
T Consensus 429 ~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g-------i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 429 DDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG-------IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc-------cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 3444444432 346789999999999999999997653 56888999999999999999999999999999999
Q ss_pred hccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCH
Q 000916 628 AETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQ 691 (1225)
Q Consensus 628 AEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~ 691 (1225)
++.|+++|+|.+||.+.-.+. ..+-|..++.||.|||||..+|.|+-+++.
T Consensus 502 L~rGfDiP~v~lVvi~Dadif-------------G~p~~~~~~iqriGRagR~~~G~vi~~~~~ 552 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKE-------------GFLRSERSLIQTIGRAARNVNGKVIMYADK 552 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccc-------------cCCCCHHHHHHHhcCCCCCCCCEEEEEEcC
Confidence 999999999999996542111 124567789999999999999999988775
No 126
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.93 E-value=1.9e-07 Score=121.72 Aligned_cols=158 Identities=20% Similarity=0.203 Sum_probs=92.7
Q ss_pred HHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhcc
Q 000916 551 LLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAET 630 (1225)
Q Consensus 551 ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEt 630 (1225)
.|..++.. .+|.+|||+|+++.++.+++.|...... ..+.++. .+.. ..+.++++.+..|...|+|+|+..-.
T Consensus 665 ~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~---~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~E 737 (850)
T TIGR01407 665 YIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEF---EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWE 737 (850)
T ss_pred HHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccc---cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeec
Confidence 33344333 4689999999999999999998653211 1233333 2222 35666777777788999999999999
Q ss_pred ccCCCCeE--EEEeCCCcccccccCCCC----------cccccccccCHh--hHHhhcCccCCCcc--eEEEEecCH---
Q 000916 631 AITIDDVV--YVIDSGRMKEKSYDPYNN----------VSTLQSSWVSKA--SAKQRAGRAGRCQA--GICYHLYSQ--- 691 (1225)
Q Consensus 631 SITI~dV~--~VIDsG~~Ke~~yd~~~~----------~s~L~~~wiSka--sa~QR~GRAGR~~~--G~CyrLys~--- 691 (1225)
||++++.. .||=.|++-..--||... -......-..+| -.+|-.||.=|... |..+-|=.|
T Consensus 738 GVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~ 817 (850)
T TIGR01407 738 GVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVG 817 (850)
T ss_pred ccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcccccc
Confidence 99999875 555567654322222110 000101011123 37788899988764 877754333
Q ss_pred HHH-----hcCCCCCCCcccccChhhHHHHH
Q 000916 692 LRA-----ASLPDFQVPEIKRIPIEELCLQV 717 (1225)
Q Consensus 692 ~~~-----~~m~~~~~PEI~R~pL~~l~L~~ 717 (1225)
..| +++++. +-+...+++++.-.+
T Consensus 818 ~~Yg~~~~~sLp~~--~~~~~~~~~~~~~~~ 846 (850)
T TIGR01407 818 KRYGKRFEKSLPEY--LQVKGDILGELLEAI 846 (850)
T ss_pred chHHHHHHHhCCCc--cccccCCHHHHHHHH
Confidence 223 344433 224444577664443
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.92 E-value=4.4e-09 Score=132.58 Aligned_cols=112 Identities=20% Similarity=0.161 Sum_probs=97.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEE
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVY 639 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~ 639 (1225)
.+..+|||+++...++.+.+.|...+ +.+..+||.++..+|..++..++.|...|+|||++++.|+++|+|.+
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~g-------i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~l 517 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELG-------IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSL 517 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcc-------eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcE
Confidence 46789999999999999999997653 67889999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCH
Q 000916 640 VIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQ 691 (1225)
Q Consensus 640 VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~ 691 (1225)
||.+..... .-|-+..++.||.|||||...|.|+.+++.
T Consensus 518 Vii~d~eif-------------G~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 518 VAILDADKE-------------GFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred EEEeCCccc-------------ccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 997554211 114567889999999999988999999873
No 128
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.90 E-value=1.1e-07 Score=117.00 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhc--C--CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHH--HhcCCCCCCce
Q 000916 547 LIEQLLRKICMD--S--EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKK--VFKRPPPGCRK 620 (1225)
Q Consensus 547 Li~~ll~~I~~~--~--~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~--vF~~~p~g~rK 620 (1225)
.|+..+...+.. . ..|..|||+-..++.+.+.+.+...-.- ..+++.. .+-+.- ...|.. -|.. ...--.
T Consensus 408 ~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype-~~~~~a~-~IT~d~-~~~q~~Id~f~~-ke~~P~ 483 (875)
T COG4096 408 TVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE-YNGRYAM-KITGDA-EQAQALIDNFID-KEKYPR 483 (875)
T ss_pred HHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc-ccCceEE-EEeccc-hhhHHHHHHHHh-cCCCCc
Confidence 344444444443 2 2578999999999999999999764211 1223322 222322 223333 3443 233457
Q ss_pred EEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc--e------EEEEecCH-
Q 000916 621 IILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA--G------ICYHLYSQ- 691 (1225)
Q Consensus 621 IILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~--G------~CyrLys~- 691 (1225)
|+++-+..-|||++|.|+.+|= + ..--||.-+.|..||.=|.+| | ..|.+|.-
T Consensus 484 IaitvdlL~TGiDvpev~nlVF---------~---------r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 484 IAITVDLLTTGVDVPEVVNLVF---------D---------RKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred eEEehhhhhcCCCchheeeeee---------h---------hhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 9999999999999999999992 1 123488899999999999766 3 34566653
Q ss_pred --HHHhcCCCCCCCcccccChhhHHHHHhh
Q 000916 692 --LRAASLPDFQVPEIKRIPIEELCLQVKL 719 (1225)
Q Consensus 692 --~~~~~m~~~~~PEI~R~pL~~l~L~~K~ 719 (1225)
..|-.|.+-..++-.+.+|+.=.+..+.
T Consensus 546 ~~~~~~~~~~~~~e~~~~~~l~~rLF~~~~ 575 (875)
T COG4096 546 DNTEYFEMDPEMREGRVRVSLEQRLFADRL 575 (875)
T ss_pred hhhhhhccCcccccccccchHHHHHhhhhh
Confidence 3355677777787778887765554443
No 129
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.89 E-value=1.5e-07 Score=116.24 Aligned_cols=163 Identities=19% Similarity=0.317 Sum_probs=115.9
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHh-CCcc--C
Q 000916 188 LPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVER-GENI--G 264 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Er-ge~l--G 264 (1225)
+--..+|.+.+..+..|.-++|+++|-+||| .+|-|..|..+......-+|..-|++.+.-+++--|-.-. ...+ |
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKT-fisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKT-FISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCce-eccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 3345678899999999999999999999997 5666777777654445568888999998888877774433 2111 2
Q ss_pred CeE-E-----EEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHH
Q 000916 265 DNI-G-----YKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLA 338 (1225)
Q Consensus 265 ~~V-G-----Y~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~ 338 (1225)
.++ | |++ ..-+++|+|+-+.+|-..|.+.+. ...+...+.+||.||||-=+-.-|-++
T Consensus 589 ~sl~g~ltqEYsi-----np~nCQVLITvPecleslLlspp~----------~q~~cerIRyiIfDEVH~iG~~ed~l~- 652 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSI-----NPWNCQVLITVPECLESLLLSPPH----------HQKFCERIRYIIFDEVHLIGNEEDGLL- 652 (1330)
T ss_pred hhhHhhhhHHhcC-----CchhceEEEEchHHHHHHhcCchh----------hhhhhhcceEEEechhhhccccccchH-
Confidence 211 1 322 123789999999999888877431 114789999999999997555444433
Q ss_pred HHHHhCcCCCCceEEEEcccc-cHHHHHhhhC
Q 000916 339 IIRDMLPSYPHLRLILMSATL-DADRFSQYFG 369 (1225)
Q Consensus 339 lLk~ll~~~~~LKlILMSATl-d~~~Fs~yF~ 369 (1225)
++.+...-.+-.|.+|||+ |++.|..|.+
T Consensus 653 --~Eqll~li~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 653 --WEQLLLLIPCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred --HHHHHHhcCCCeeEEecccCCHHHHHHHHH
Confidence 2222223346688999999 9999999987
No 130
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.89 E-value=2.4e-09 Score=97.11 Aligned_cols=70 Identities=29% Similarity=0.364 Sum_probs=65.8
Q ss_pred eEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHh
Q 000916 593 FVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQ 672 (1225)
Q Consensus 593 ~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~Q 672 (1225)
+.+..+||.++..+|..++..+..|..+|+++|+++++|++++++..||..+. |.+.+.+.|
T Consensus 12 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~Q 73 (82)
T smart00490 12 IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYIQ 73 (82)
T ss_pred CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999998765 788999999
Q ss_pred hcCccCCC
Q 000916 673 RAGRAGRC 680 (1225)
Q Consensus 673 R~GRAGR~ 680 (1225)
|.||+||.
T Consensus 74 ~~gR~~R~ 81 (82)
T smart00490 74 RIGRAGRA 81 (82)
T ss_pred hhcccccC
Confidence 99999995
No 131
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.85 E-value=8e-09 Score=108.44 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=93.0
Q ss_pred CChHHHHHHHHHHHc-------CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCC
Q 000916 189 PISSFKDVITSTVDS-------NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGE 261 (1225)
Q Consensus 189 Pi~~~r~eIl~aI~~-------~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge 261 (1225)
..+.+|++++..+.+ +..++|.++||||||-.+-.++.+... +++++.|+...+-+..+.+-.....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 356778887777763 699999999999999877766666542 7888889988777777666211111
Q ss_pred ccCCeEE-----------------EEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEec
Q 000916 262 NIGDNIG-----------------YKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVD 324 (1225)
Q Consensus 262 ~lG~~VG-----------------Y~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvD 324 (1225)
.. ...+ ..............+.+.|...|.......... ..............+.+||+|
T Consensus 77 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 77 KY-NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKI--DESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp SE-EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH-----------GCHHGGGGSESEEEEE
T ss_pred hh-hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccccccc--ccchhhhhhhccccCCEEEEe
Confidence 10 0000 000011112346689999999998877643100 000001112345678899999
Q ss_pred cccccccchhHHHHHHHHhCcCCCCceEEEEcccc
Q 000916 325 EIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATL 359 (1225)
Q Consensus 325 EvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATl 359 (1225)
|+|.-.-++. .+.++. .+.-.+|.||||.
T Consensus 154 EaH~~~~~~~-----~~~i~~-~~~~~~l~lTATp 182 (184)
T PF04851_consen 154 EAHHYPSDSS-----YREIIE-FKAAFILGLTATP 182 (184)
T ss_dssp TGGCTHHHHH-----HHHHHH-SSCCEEEEEESS-
T ss_pred hhhhcCCHHH-----HHHHHc-CCCCeEEEEEeCc
Confidence 9996443332 222222 5677899999996
No 132
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.83 E-value=2.6e-07 Score=117.12 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=81.8
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeeccc-CCCCcc
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESK-GGKHSS 282 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~-~s~~t~ 282 (1225)
.+-.+|..+||||||.-....+ ..+.......+|++.-||+.+.-+..+.+..-....+ ..++..-.+... ......
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la-~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~-~~~~s~~~L~~~l~~~~~~ 340 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAA-RKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCA-ERIESIAELKRLLEKDDGG 340 (667)
T ss_pred CceeEEEEecCCCccHHHHHHH-HHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCC-cccCCHHHHHHHHhCCCCC
Confidence 3578889999999995543333 2222333456899999999999888887754321111 001100000011 123468
Q ss_pred EEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccc
Q 000916 283 IVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATL 359 (1225)
Q Consensus 283 I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATl 359 (1225)
|+|+|-..|.+.+..... .+ +.-..--+||+||+| |+...++ ...++.. .|+...+.||||.
T Consensus 341 iivtTiQk~~~~~~~~~~---------~~-~~~~~~~lvIvDEaH-rs~~~~~-~~~l~~~---~p~a~~lGfTaTP 402 (667)
T TIGR00348 341 IIITTIQKFDKKLKEEEE---------KF-PVDRKEVVVIFDEAH-RSQYGEL-AKNLKKA---LKNASFFGFTGTP 402 (667)
T ss_pred EEEEEhHHhhhhHhhhhh---------cc-CCCCCCEEEEEEcCc-cccchHH-HHHHHhh---CCCCcEEEEeCCC
Confidence 999999999875532100 00 000011279999999 7766543 3344443 4677899999999
No 133
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.81 E-value=2.3e-07 Score=109.27 Aligned_cols=114 Identities=19% Similarity=0.300 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHH---HHHHhcCCCCCCceEEEecchhccccCCCC
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQ---QKKVFKRPPPGCRKIILSTNIAETAITIDD 636 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~e---Q~~vF~~~p~g~rKIILATNIAEtSITI~d 636 (1225)
.+|+.+|=. +..+|-.+...|+... ...+..+||+||++. |...|+. |.+.-+|+|||+..-.|+.+ +
T Consensus 356 k~GDCvV~F-Skk~I~~~k~kIE~~g------~~k~aVIYGsLPPeTr~aQA~~FNd-~~~e~dvlVAsDAIGMGLNL-~ 426 (700)
T KOG0953|consen 356 KPGDCVVAF-SKKDIFTVKKKIEKAG------NHKCAVIYGSLPPETRLAQAALFND-PSNECDVLVASDAIGMGLNL-N 426 (700)
T ss_pred CCCCeEEEe-ehhhHHHHHHHHHHhc------CcceEEEecCCCCchhHHHHHHhCC-CCCccceEEeeccccccccc-c
Confidence 467766533 6788999999998764 234677899999985 6667875 56888999999999999998 6
Q ss_pred eEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc----eEEEEecCH
Q 000916 637 VVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA----GICYHLYSQ 691 (1225)
Q Consensus 637 V~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~----G~CyrLys~ 691 (1225)
|+-||=+-+.| |+ .-.+..|+-++++|=+|||||.+. |..-.|+++
T Consensus 427 IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 427 IRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred eeEEEEeeccc---CC------cccceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 77787555544 22 345668999999999999999753 777777765
No 134
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=98.76 E-value=8.7e-09 Score=89.10 Aligned_cols=52 Identities=31% Similarity=0.544 Sum_probs=47.2
Q ss_pred HHHhhcCC-CceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEec
Q 000916 36 LDGFLASK-DEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCK 87 (1225)
Q Consensus 36 l~~f~~s~-~~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~k 87 (1225)
|.-|+.+. ..||+||+++|++||+.||.+|++|||.++|.|.|..|++.|+|
T Consensus 8 lllFkdd~~~~eL~Fp~~ls~~eRriih~la~~lGL~~~s~G~g~~R~v~v~k 60 (60)
T cd02639 8 LLLFKDDRMRDELAFPSSLSPAERRIVHLLASRLGLNHVSDGTGERRQVQITK 60 (60)
T ss_pred EEEEecCCCceEEEcCCCCCHHHHHHHHHHHHHcCCceEEeCCCceEEEeecC
Confidence 44577664 78999999999999999999999999999999999999999986
No 135
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.75 E-value=1.8e-06 Score=108.19 Aligned_cols=137 Identities=21% Similarity=0.249 Sum_probs=93.7
Q ss_pred HhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCc
Q 000916 183 EERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGEN 262 (1225)
Q Consensus 183 ~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~ 262 (1225)
+.-...+.|..|.-=..-+-.|+-.-|.+|||.||||..-.+-+ .++. .+.+.++.-|++..+.++++|+.. +++.
T Consensus 76 ~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl--~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~-~~e~ 151 (1187)
T COG1110 76 KKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL--YLAK-KGKRVYIIVPTTTLVRQVYERLKK-FAED 151 (1187)
T ss_pred HHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH--HHHh-cCCeEEEEecCHHHHHHHHHHHHH-HHhh
Confidence 33344577888888788888999999999999999997644433 2221 225788889999999999999954 3333
Q ss_pred cC---CeEEEEEeeccc---------CCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccC--CccEEEeccccc
Q 000916 263 IG---DNIGYKIRLESK---------GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVS--ALTHIIVDEIHE 328 (1225)
Q Consensus 263 lG---~~VGY~IR~es~---------~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~--~~shVIvDEvHE 328 (1225)
.| ..++|+-.+-.+ .+-+-+|++.|++.|-+.+. .|. +++.|+||.|+-
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e-----------------~L~~~kFdfifVDDVDA 214 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE-----------------ELSKLKFDFIFVDDVDA 214 (1187)
T ss_pred cCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH-----------------HhcccCCCEEEEccHHH
Confidence 33 222233322111 12356899999999988764 344 688999999995
Q ss_pred ---cccchhHHHHHH
Q 000916 329 ---RDRYSDFMLAII 340 (1225)
Q Consensus 329 ---R~~~tD~LL~lL 340 (1225)
.+-|.|-+|-+|
T Consensus 215 ~LkaskNvDriL~Ll 229 (1187)
T COG1110 215 ILKASKNVDRLLRLL 229 (1187)
T ss_pred HHhccccHHHHHHHc
Confidence 556677666553
No 136
>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids. The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.
Probab=98.64 E-value=6.5e-08 Score=85.13 Aligned_cols=60 Identities=32% Similarity=0.524 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEecc
Q 000916 27 ATRIRISQILDGFLASKDEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCKS 88 (1225)
Q Consensus 27 ~~~~~~~~~l~~f~~s~~~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~k~ 88 (1225)
.+...+.++++.|+.+++ .++|++ +++.+|++||++|..+||.|.|.|.|++|+|+|+|+
T Consensus 4 ~l~~~~~~~~~~~~~~~~-~~~f~p-m~~~~R~~iH~~a~~~gL~s~S~g~~~~R~vvv~k~ 63 (63)
T PF01424_consen 4 ELEKIEEKLIEFFLSSGE-SLEFPP-MNSFERKLIHELAEYYGLKSKSEGEGPNRRVVVSKT 63 (63)
T ss_dssp HHHHHHHHHHHHHHHCSS-EEEEEC---SHHHHHHHHHHHHCTEEEEEESSSSSSEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCC-EEEECC-CCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEEeC
Confidence 445555666666666665 999998 999999999999999999999999999999999874
No 137
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.62 E-value=2.8e-07 Score=116.45 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=95.1
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEE
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGY 269 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY 269 (1225)
...++.+++..+..++.+|..+.||+|||..+-.+++..+.. +. .+++..|+|.+|.++++- ...++..+|-+||.
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-g~--~v~IVTpTrELA~Qdae~-m~~L~k~lGLsV~~ 168 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-GK--PVHLVTVNDYLAQRDCEW-VGSVLRWLGLTTGV 168 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-cC--CeEEEeCCHHHHHHHHHH-HHHHHhhcCCeEEE
Confidence 788899999999999999999999999999999999987754 22 255567899999999884 45566677888887
Q ss_pred EEeecccC----CCCccEEEEccHHH-HHHHHhcCcccccccCCCccccccCCccEEEeccccc
Q 000916 270 KIRLESKG----GKHSSIVFCTNGVL-LRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE 328 (1225)
Q Consensus 270 ~IR~es~~----s~~t~I~f~T~GvL-Lr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE 328 (1225)
.+...+.. .-.+.|+|+|||.| +..|....+.. ...+....++.++|||||+.
T Consensus 169 i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~------~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 169 LVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIAT------RKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred EeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCc------CHHHhhcccccEEEEechhh
Confidence 66433211 12478999999999 88887542210 00111345778999999984
No 138
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.53 E-value=9.9e-07 Score=103.42 Aligned_cols=69 Identities=29% Similarity=0.192 Sum_probs=62.9
Q ss_pred EEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhc
Q 000916 595 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRA 674 (1225)
Q Consensus 595 vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~ 674 (1225)
|..+.|+...+++++|-...=.|+.+-|+|||..|-||+|.....|+-+|+ |.|-|+..|-.
T Consensus 560 i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~ 621 (1034)
T KOG4150|consen 560 ITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQA 621 (1034)
T ss_pred HHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccC------------------chhHHHHHHHh
Confidence 445678999999999987777899999999999999999999999999999 88999999999
Q ss_pred CccCCCc
Q 000916 675 GRAGRCQ 681 (1225)
Q Consensus 675 GRAGR~~ 681 (1225)
|||||..
T Consensus 622 GRAGRRN 628 (1034)
T KOG4150|consen 622 GRAGRRN 628 (1034)
T ss_pred ccccccC
Confidence 9999954
No 139
>smart00393 R3H Putative single-stranded nucleic acids-binding domain.
Probab=98.52 E-value=2.8e-07 Score=85.00 Aligned_cols=62 Identities=31% Similarity=0.512 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEecc
Q 000916 26 EATRIRISQILDGFLASKDEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCKS 88 (1225)
Q Consensus 26 ~~~~~~~~~~l~~f~~s~~~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~k~ 88 (1225)
......+...+.+|..++..++.||| |++.+|++||++|..+||.|.|.|.|.+|+++|++.
T Consensus 18 ~~~l~~~~~~~~~~v~~~~~~~~~~p-m~~~~R~~iH~~a~~~~l~s~S~g~g~~R~vvv~~~ 79 (79)
T smart00393 18 REELIELELEIARFVKSTKESVELPP-MNSYERKIVHELAEKYGLESESFGEGPKRRVVISKK 79 (79)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEcCC-CCHHHHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeC
Confidence 34556677778889999999999998 999999999999999999999999999999999874
No 140
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.51 E-value=2.1e-05 Score=101.84 Aligned_cols=153 Identities=14% Similarity=0.098 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhc
Q 000916 550 QLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAE 629 (1225)
Q Consensus 550 ~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAE 629 (1225)
+.|..+. ..+|.+|||+|+++.++.+++.|... .+.++.-..+.+.. ++.+++..+...|+++|.-.=
T Consensus 638 ~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-------~~~~l~Qg~~~~~~---~l~~~F~~~~~~vLlG~~sFw 705 (820)
T PRK07246 638 KRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-------QVSHLAQEKNGTAY---NIKKRFDRGEQQILLGLGSFW 705 (820)
T ss_pred HHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-------CCcEEEeCCCccHH---HHHHHHHcCCCeEEEecchhh
Confidence 3344444 25799999999999999999988542 13333323234433 344444456778999999999
Q ss_pred cccCCC--CeEEEEeCCCcccccccCCCC----------cccccccccCH--hhHHhhcCccCCCcc--eEEEEecCH--
Q 000916 630 TAITID--DVVYVIDSGRMKEKSYDPYNN----------VSTLQSSWVSK--ASAKQRAGRAGRCQA--GICYHLYSQ-- 691 (1225)
Q Consensus 630 tSITI~--dV~~VIDsG~~Ke~~yd~~~~----------~s~L~~~wiSk--asa~QR~GRAGR~~~--G~CyrLys~-- 691 (1225)
-||++| +...||=.+++-..-.||... -+.....-+.+ -..+|=.||.=|... |+.+-|=+|
T Consensus 706 EGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~ 785 (820)
T PRK07246 706 EGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRIL 785 (820)
T ss_pred CCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCccc
Confidence 999996 456666567654443343211 11111111222 347788899988764 887744333
Q ss_pred -HHH-hcCCCCCCC--cccccChhhHH
Q 000916 692 -LRA-ASLPDFQVP--EIKRIPIEELC 714 (1225)
Q Consensus 692 -~~~-~~m~~~~~P--EI~R~pL~~l~ 714 (1225)
..| ..+...-+| -+...+++++.
T Consensus 786 ~k~Yg~~~l~sLP~~~~~~~~~~~~~~ 812 (820)
T PRK07246 786 TKSYGKQILASLAEEFLISQQNFSDVL 812 (820)
T ss_pred ccHHHHHHHHhCCCCCccccCCHHHHH
Confidence 123 222222222 14456777663
No 141
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.42 E-value=1.1e-05 Score=102.36 Aligned_cols=131 Identities=16% Similarity=0.154 Sum_probs=86.5
Q ss_pred hhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCcc
Q 000916 184 ERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 184 ~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
.|+.|-...+--+++-.+.=|+=-|..-.||+|||......++-.+.. |. .+.+.-|...+|..=++.+..-. +.+
T Consensus 75 ~~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~-G~--~VhvvT~ndyLA~RD~e~m~~l~-~~l 150 (913)
T PRK13103 75 GKRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS-GK--GVHVVTVNDYLARRDANWMRPLY-EFL 150 (913)
T ss_pred HHHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHc-CC--CEEEEeCCHHHHHHHHHHHHHHh-ccc
Confidence 355677777777899998888888888999999998665555544332 22 45566788888877777665443 567
Q ss_pred CCeEEEEEeeccc----CCCCccEEEEccHHH----HHHHHhcCcccccccCCCccccccCCccEEEeccccc
Q 000916 264 GDNIGYKIRLESK----GGKHSSIVFCTNGVL----LRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE 328 (1225)
Q Consensus 264 G~~VGY~IR~es~----~s~~t~I~f~T~GvL----Lr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE 328 (1225)
|-+||.-....+. ..-.+.|+|+|+.-| ||.=+.-. .-+....++.++||||+|-
T Consensus 151 Gl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~----------~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFS----------LDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred CCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceec----------hhhhcccccceeEechhhh
Confidence 8889864321111 112478999999987 44222110 0012457889999999994
No 142
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.41 E-value=3.6e-05 Score=95.63 Aligned_cols=128 Identities=17% Similarity=0.124 Sum_probs=82.5
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccC
Q 000916 185 RSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIG 264 (1225)
Q Consensus 185 R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG 264 (1225)
++.|-...+--+++-++.-++--|..=.||+|||......++-.+.. |. .+.+.-|...+|..=|+.+..-. +.+|
T Consensus 72 ~R~lg~r~ydvQlig~l~Ll~G~VaEM~TGEGKTLvA~l~a~l~AL~-G~--~VhvvT~NdyLA~RDae~m~~ly-~~LG 147 (764)
T PRK12326 72 ERTLGLRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQ-GR--RVHVITVNDYLARRDAEWMGPLY-EALG 147 (764)
T ss_pred HHHcCCCcchHHHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHHHc-CC--CeEEEcCCHHHHHHHHHHHHHHH-HhcC
Confidence 45666666777788887766655667889999998766665544432 22 45556788887777777654433 5678
Q ss_pred CeEEEEEeecccC----CCCccEEEEccHH-----HHHHHHhcCcccccccCCCccccccCCccEEEecccc
Q 000916 265 DNIGYKIRLESKG----GKHSSIVFCTNGV-----LLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH 327 (1225)
Q Consensus 265 ~~VGY~IR~es~~----s~~t~I~f~T~Gv-----LLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvH 327 (1225)
-+||+-..-.... .-.+.|+|+|+.= |-..|.... -.....++.+.|||||+
T Consensus 148 Lsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~-----------~~~v~R~~~faIVDEvD 208 (764)
T PRK12326 148 LTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDV-----------ADLVSPNPDVAIIDEAD 208 (764)
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccCh-----------HhhcCCccceeeecchh
Confidence 9999754321111 1256899999884 333332221 01255778999999998
No 143
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.35 E-value=3.6e-05 Score=96.95 Aligned_cols=167 Identities=19% Similarity=0.249 Sum_probs=105.1
Q ss_pred CCChHHHHHHHHHHHcC----CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCcc
Q 000916 188 LPISSFKDVITSTVDSN----QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~~~----~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
+.....|+...+.|.+. ...++.|-||||||..+-+.|-+.. .+| ..+++.-|---..-++.+|+-..+|.++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L-~~G--kqvLvLVPEI~Ltpq~~~rf~~rFg~~v 273 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL-AQG--KQVLVLVPEIALTPQLLARFKARFGAKV 273 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH-HcC--CEEEEEeccccchHHHHHHHHHHhCCCh
Confidence 45556666777777655 8899999999999988888776554 334 3788888987777788888877777554
Q ss_pred CCe---EEEEEeec---ccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccch----
Q 000916 264 GDN---IGYKIRLE---SKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYS---- 333 (1225)
Q Consensus 264 G~~---VGY~IR~e---s~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~t---- 333 (1225)
+.- ++=+-|.+ ...+-..+|++.|=--|. .-+.++..|||||=|+=+.-.
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--------------------~Pf~~LGLIIvDEEHD~sYKq~~~p 333 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--------------------LPFKNLGLIIVDEEHDSSYKQEDGP 333 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhc--------------------CchhhccEEEEeccccccccCCcCC
Confidence 320 00001111 111235578888743221 147899999999999732211
Q ss_pred --hH-HHHHHHHhCcCCCCceEEEEcccccHHHHHhhhCC-CCeEecCCcc
Q 000916 334 --DF-MLAIIRDMLPSYPHLRLILMSATLDADRFSQYFGG-CPVIQVPGFT 380 (1225)
Q Consensus 334 --D~-LL~lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~-~pvi~I~gr~ 380 (1225)
+. =++++|- +.-+..|||=|||...|.+.+--.+ -..+.+..|.
T Consensus 334 rYhARdvA~~Ra---~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~ 381 (730)
T COG1198 334 RYHARDVAVLRA---KKENAPVVLGSATPSLESYANAESGKYKLLRLTNRA 381 (730)
T ss_pred CcCHHHHHHHHH---HHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccc
Confidence 11 1233332 2246799999999999988776444 2344444443
No 144
>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=98.34 E-value=1.3e-06 Score=75.50 Aligned_cols=57 Identities=30% Similarity=0.451 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhcCC-CceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEec
Q 000916 30 IRISQILDGFLASK-DEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCK 87 (1225)
Q Consensus 30 ~~~~~~l~~f~~s~-~~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~k 87 (1225)
..+.+.|+.|+.+. ...+.||| |++.+|++||++|..+||.|.|.|.+++|.+.|+|
T Consensus 2 ~~~E~~l~~fv~d~~~~~~~f~p-M~~~~R~~vHdla~~~gl~SeS~d~Ep~R~V~v~k 59 (59)
T cd06006 2 QQIESTLRKFINDKSKRSLRFPP-MRSPQRAFIHELAKDYGLYSESQDPEPKRSVFVKK 59 (59)
T ss_pred hhHHHHHHHHHhCCCCCceeCCC-CCHHHHHHHHHHHHHcCCeeEecCCCCCcEEEEeC
Confidence 35778999999997 67889988 99999999999999999999999999999999986
No 145
>cd02325 R3H R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=98.33 E-value=1.2e-06 Score=75.12 Aligned_cols=57 Identities=25% Similarity=0.475 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhcCC-CceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEec
Q 000916 30 IRISQILDGFLASK-DEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCK 87 (1225)
Q Consensus 30 ~~~~~~l~~f~~s~-~~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~k 87 (1225)
..+.+.|.+|+.+. ..++.|++ +++.+|+.||++|+.+||.+.|.|.|.+|++.|++
T Consensus 2 ~~~~~~l~~f~~~~~~~~~~~~p-~~~~~R~~vH~la~~~~L~s~s~g~~~~r~v~i~~ 59 (59)
T cd02325 2 EEREEELEAFAKDAAGKSLELPP-MNSYERKLIHDLAEYYGLKSESEGEGPNRRVVITK 59 (59)
T ss_pred hHHHHHHHHHHHhhcCCeEEcCC-CCHHHHHHHHHHHHHCCCEEEEecCCCCcEEEEeC
Confidence 36788999999998 89999987 89999999999999999999999999999999975
No 146
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.33 E-value=1.5e-06 Score=110.26 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=84.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccccCCC---C
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITID---D 636 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtSITI~---d 636 (1225)
.+.+||||+.+.+..+.+.+.|.... +..-.||+ .+.++...+..+..+.-.|+||||+|.+|++|+ +
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~g-------I~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~ 667 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKR-------IAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEG 667 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcC-------CCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccc
Confidence 46799999999999999999998754 44567886 466677777767777889999999999999999 5
Q ss_pred eE-----EEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCc-ceEEEEecCHHH
Q 000916 637 VV-----YVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ-AGICYHLYSQLR 693 (1225)
Q Consensus 637 V~-----~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~-~G~CyrLys~~~ 693 (1225)
|. +||.+.+ +-|+--+.||+|||||.+ ||.+.-++|..+
T Consensus 668 V~~vGGL~VIgter------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 668 VRELGGLFILGSER------------------HESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred hhhhCCceeeCCCC------------------CchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 53 4476554 445556789999999987 499998888643
No 147
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.26 E-value=0.00012 Score=92.47 Aligned_cols=132 Identities=16% Similarity=0.153 Sum_probs=80.1
Q ss_pred hhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCC--
Q 000916 184 ERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGE-- 261 (1225)
Q Consensus 184 ~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge-- 261 (1225)
.|+.|-...+--+++-.|.-|+=-|.-=.||=|||.....+.+=.++ .|.++.|+-+- -.+|+|=|+++|.
T Consensus 71 ~~R~lG~r~ydVQliGglvLh~G~IAEMkTGEGKTLvAtLpayLnAL-~GkgVhVVTvN------dYLA~RDae~mg~vy 143 (925)
T PRK12903 71 TKRVLGKRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNAL-TGKGVIVSTVN------EYLAERDAEEMGKVF 143 (925)
T ss_pred HHHHhCCCcCchHHHHHHHHhcCCeeeecCCCCccHHHHHHHHHHHh-cCCceEEEecc------hhhhhhhHHHHHHHH
Confidence 35566667777789988877777788889999999644333322222 24445555433 3577888888763
Q ss_pred -ccCCeEEEEEeecc----cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccc
Q 000916 262 -NIGDNIGYKIRLES----KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE 328 (1225)
Q Consensus 262 -~lG~~VGY~IR~es----~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE 328 (1225)
.+|-+||..+..-+ +..=.+.|+|+|+.=|---...|.+.. + .-+....++.+.|||||+-
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~----~--~~~~vqR~~~faIVDEVDS 209 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVS----S--KEEKVQRGLNFCLIDEVDS 209 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccc----c--HHHhcCcccceeeeccchh
Confidence 57899997653211 112257899999875432222221100 0 0012457778889999883
No 148
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.19 E-value=9.2e-05 Score=93.76 Aligned_cols=126 Identities=20% Similarity=0.140 Sum_probs=80.2
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhC---C
Q 000916 185 RSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERG---E 261 (1225)
Q Consensus 185 R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erg---e 261 (1225)
|+.|-...+--+++-+|.-++--|..-.||-|||.....+.+=.++ .|..+.|+. +..- +|+|-++.++ +
T Consensus 70 ~R~lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL-~G~~VhVvT--~Ndy----LA~RD~e~m~pvy~ 142 (870)
T CHL00122 70 FRTLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL-TGKGVHIVT--VNDY----LAKRDQEWMGQIYR 142 (870)
T ss_pred HHHhCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHh-cCCceEEEe--CCHH----HHHHHHHHHHHHHH
Confidence 4566666677789999888888889999999999865544432222 244454443 3333 5566666654 4
Q ss_pred ccCCeEEEEEeecc----cCCCCccEEEEccH-----HHHHHHHhcCcccccccCCCccccccCCccEEEeccccc
Q 000916 262 NIGDNIGYKIRLES----KGGKHSSIVFCTNG-----VLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE 328 (1225)
Q Consensus 262 ~lG~~VGY~IR~es----~~s~~t~I~f~T~G-----vLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE 328 (1225)
.+|-+||..+...+ +..=.+.|+|+|+. +|-..|.... .+....++.+.|||||+-
T Consensus 143 ~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~-----------~~~v~r~~~faIVDEvDS 207 (870)
T CHL00122 143 FLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSL-----------SDVVQRPFNYCIIDEVDS 207 (870)
T ss_pred HcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcCh-----------HHhhccccceeeeecchh
Confidence 67999997543222 11125689999996 4444443221 012467788999999983
No 149
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=6.1e-06 Score=82.33 Aligned_cols=121 Identities=23% Similarity=0.326 Sum_probs=75.0
Q ss_pred HcCCeEEEEccCCCchhchHHHHHHHHHhc---cCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCC
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFLLEHIWS---KGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGG 278 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~ILe~~~~---~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s 278 (1225)
+++.+++|.|++|||||+.+-+++.+.... ....--+.+.-|.......+++.++.+.+.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 467889999999999999999888776421 1122234566666656778888888888765432
Q ss_pred CCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEccc
Q 000916 279 KHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSAT 358 (1225)
Q Consensus 279 ~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSAT 358 (1225)
-.|...+.+.+... + .-.....|||||+|.-. .+-++..|+.+.. .+++++|++.-.
T Consensus 69 ------~~~~~~l~~~~~~~-l-------------~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDA-L-------------DRRRVVLLVIDEADHLF--SDEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHH-H-------------HHCTEEEEEEETTHHHH--THHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHH-H-------------HhcCCeEEEEeChHhcC--CHHHHHHHHHHHh-CCCCeEEEEECh
Confidence 12233333333321 0 01122689999999753 4778888888887 788999887654
No 150
>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=98.14 E-value=6.8e-06 Score=72.44 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhcCC-CceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEecc
Q 000916 28 TRIRISQILDGFLASK-DEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVCKS 88 (1225)
Q Consensus 28 ~~~~~~~~l~~f~~s~-~~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~k~ 88 (1225)
....+.+.|..|++++ .+.+.||| +++.+|..||++|+-+||.|.|.|.| +|++.|+|.
T Consensus 4 ~~l~~E~~i~~Fi~~~~~~~~~f~p-m~sy~RllvH~la~~~gL~s~s~~~~-~r~vvv~kt 63 (63)
T cd02642 4 FVLKLEKDLLAFIKDSTRQSLELPP-MNSYYRLLAHRVAQYYGLDHNVDNSG-GKCVIVNKT 63 (63)
T ss_pred HHHHHHHHHHHHHhCCCCCeeEcCC-CCcHHHHHHHHHHHHhCCeeEeecCC-ceEEEEEeC
Confidence 4567889999999998 89999998 99999999999999999999999999 999999873
No 151
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.11 E-value=1.4e-05 Score=86.44 Aligned_cols=126 Identities=21% Similarity=0.331 Sum_probs=87.0
Q ss_pred CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccEE
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIV 284 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I~ 284 (1225)
+|++++|+||+||||.+...-...... +....++|+-.-|++|+..-+..|+.+|..+ |..+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~-----~~~~~~~--------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPF-----YVARTES--------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEE-----EESSTTS---------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhcccc-----chhhcch---------
Confidence 578999999999999999887766545 7778899999999999999999998887442 1111110
Q ss_pred EEccHHHHH-HHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcC-CCCceEEEEcccccHH
Q 000916 285 FCTNGVLLR-LLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPS-YPHLRLILMSATLDAD 362 (1225)
Q Consensus 285 f~T~GvLLr-~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~-~~~LKlILMSATld~~ 362 (1225)
.+.-+++ .+..- .-+++++|+||-+. |+....-++.-|+.++.. .|+--+++||||+..+
T Consensus 67 --~~~~~~~~~l~~~---------------~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 67 --DPAEIAREALEKF---------------RKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE 128 (196)
T ss_dssp --CHHHHHHHHHHHH---------------HHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH
T ss_pred --hhHHHHHHHHHHH---------------hhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChH
Confidence 1223333 33321 23568999999998 666666666777766554 4677888999999544
Q ss_pred H
Q 000916 363 R 363 (1225)
Q Consensus 363 ~ 363 (1225)
.
T Consensus 129 ~ 129 (196)
T PF00448_consen 129 D 129 (196)
T ss_dssp H
T ss_pred H
Confidence 3
No 152
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.07 E-value=0.00053 Score=84.27 Aligned_cols=122 Identities=21% Similarity=0.290 Sum_probs=87.3
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHh---cCCCCCCceEEEe
Q 000916 548 IEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVF---KRPPPGCRKIILS 624 (1225)
Q Consensus 548 i~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF---~~~p~g~rKIILA 624 (1225)
+..||..+. ..+..|||| .....+.+.|+.-..+ ..|...-|-|+++.++|.... ..++.-+--.+||
T Consensus 476 LDkLL~~Lk--~~GhRVLIF----SQmt~mLDILeDyc~~---R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 476 LDKLLPKLK--EQGHRVLIF----SQMTRMLDILEDYCML---RGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred HHHHHHHHH--hCCCeEEEe----HHHHHHHHHHHHHHHh---cCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 344444443 356789999 4566677777653322 248889999999999987764 4444445556799
Q ss_pred cchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHHH
Q 000916 625 TNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLR 693 (1225)
Q Consensus 625 TNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~ 693 (1225)
|-.+--||.+-....|| .||+.-+ |-.--.|.+|+-|-|-..|=+.|||.|...
T Consensus 547 TRAGGLGINL~aADtVI--------lyDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVI--------LYDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccccccccEEE--------EecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 99999999998888888 4554322 233346889999999999999999999743
No 153
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00013 Score=86.61 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=83.8
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHh---ccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCC
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIW---SKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKH 280 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~---~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~ 280 (1225)
..+++++|+||+||||-+-.+...... ..+..+.++.+-+-|++|+..-...+.-+|..+ .+++
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~~~----------- 240 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KAIE----------- 240 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--EeeC-----------
Confidence 468999999999999988766543322 235667888999999999877666655444332 0110
Q ss_pred ccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCC-CC-ceEEEEccc
Q 000916 281 SSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSY-PH-LRLILMSAT 358 (1225)
Q Consensus 281 t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~-~~-LKlILMSAT 358 (1225)
+..-+...|. .+.++++||||++. |...-...|.-++.++... ++ -.++++|||
T Consensus 241 ------~~~~l~~~L~-----------------~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 241 ------SFKDLKEEIT-----------------QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSST 296 (388)
T ss_pred ------cHHHHHHHHH-----------------HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 1222333332 35789999999998 5543223455666666533 34 477889999
Q ss_pred ccHHHHHhhhC
Q 000916 359 LDADRFSQYFG 369 (1225)
Q Consensus 359 ld~~~Fs~yF~ 369 (1225)
...+.+.+.|.
T Consensus 297 ~~~~~~~~~~~ 307 (388)
T PRK12723 297 TKTSDVKEIFH 307 (388)
T ss_pred CCHHHHHHHHH
Confidence 97666655443
No 154
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00016 Score=85.34 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=85.8
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccC-CccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCC
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKG-ETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGK 279 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~-~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~ 279 (1225)
+..+.+++++|+||+||||.+-.+........+ ..+-++.+-+-|+.|.......++-+|..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~---------------- 197 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV---------------- 197 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce----------------
Confidence 567889999999999999999887766554333 345566677778988877777766554321
Q ss_pred CccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcC-CCCceEEEEccc
Q 000916 280 HSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPS-YPHLRLILMSAT 358 (1225)
Q Consensus 280 ~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~-~~~LKlILMSAT 358 (1225)
..+-|.+-|...+. .+.++.+|+||++= |...-+++...+..+... .+.-+++++|||
T Consensus 198 ---~~~~~~~~l~~~l~-----------------~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAt 256 (374)
T PRK14722 198 ---HAVKDGGDLQLALA-----------------ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNAT 256 (374)
T ss_pred ---EecCCcccHHHHHH-----------------HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCc
Confidence 11223333444443 35678999999997 555556677777766443 355688999999
Q ss_pred ccHHH
Q 000916 359 LDADR 363 (1225)
Q Consensus 359 ld~~~ 363 (1225)
...+.
T Consensus 257 s~~~~ 261 (374)
T PRK14722 257 SHGDT 261 (374)
T ss_pred cChHH
Confidence 95443
No 155
>cd02636 R3H_sperm-antigen R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=97.81 E-value=4e-05 Score=66.01 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=51.4
Q ss_pred HHHHHHHHhhcCC-CceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCC-CceEEEEecc
Q 000916 31 RISQILDGFLASK-DEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRG-KQRRVSVCKS 88 (1225)
Q Consensus 31 ~~~~~l~~f~~s~-~~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g-~~r~l~v~k~ 88 (1225)
.+.+.+.+|++++ ...+.|+| |+.-+|+.||++|..-||.|.|.|.+ .+|+++||++
T Consensus 3 ~~e~~~~~f~~d~~~~~~~l~p-M~~~eRkivHDv~~~~Gl~S~S~Geee~~R~VVv~~k 61 (61)
T cd02636 3 SMEKEVSKFIKDSVRTREKFQP-MDKVERSIVHDVAEVAGLTSFSFGEDEVDRYVMIFKK 61 (61)
T ss_pred hHHHHHHHHhhcccccccccCC-CCHHHHHHHHHHHHhcCceeEecCCCCCceEEEEecC
Confidence 4667889999986 66779987 99999999999999999999999997 8999999974
No 156
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.80 E-value=0.00058 Score=87.50 Aligned_cols=156 Identities=20% Similarity=0.261 Sum_probs=91.2
Q ss_pred HcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEE-eecc-----
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKI-RLES----- 275 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~I-R~es----- 275 (1225)
+.|+.|+|.+++|||||..--..++. .....+++..-|-..-|.-+++-+ ..+++...|-.+ ++..
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w----~~~f~~~~G~~~~~l~ge~s~~ 1228 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDW----EKKFSKLLGLRIVKLTGETSLD 1228 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHH----HHhhccccCceEEecCCccccc
Confidence 46888999999999999443333332 334578999999877554444433 333333333322 2222
Q ss_pred -cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccccccc-chh---HHHHHHHHhC-cCCCC
Q 000916 276 -KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDR-YSD---FMLAIIRDML-PSYPH 349 (1225)
Q Consensus 276 -~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~-~tD---~LL~lLk~ll-~~~~~ 349 (1225)
+.-...+|++||+...-.. + ....++..|.||.|+-+- +.- .+.. .|-+- ..-++
T Consensus 1229 lkl~~~~~vii~tpe~~d~l-q-----------------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1229 LKLLQKGQVIISTPEQWDLL-Q-----------------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKK 1289 (1674)
T ss_pred hHHhhhcceEEechhHHHHH-h-----------------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhh
Confidence 2234679999999874221 2 245778999999997431 111 1111 22221 12357
Q ss_pred ceEEEEcccc-cHHHHHhhhCCCCeEecC--CcccceeE
Q 000916 350 LRLILMSATL-DADRFSQYFGGCPVIQVP--GFTYPVKS 385 (1225)
Q Consensus 350 LKlILMSATl-d~~~Fs~yF~~~pvi~I~--gr~~pV~~ 385 (1225)
+|+|.+|-.+ |+..| -+|..+.++..+ -|.-|.++
T Consensus 1290 ir~v~ls~~lana~d~-ig~s~~~v~Nf~p~~R~~Pl~i 1327 (1674)
T KOG0951|consen 1290 IRVVALSSSLANARDL-IGASSSGVFNFSPSVRPVPLEI 1327 (1674)
T ss_pred eeEEEeehhhccchhh-ccccccceeecCcccCCCceeE
Confidence 8999998888 77777 455555555433 33444443
No 157
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00021 Score=84.88 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=86.0
Q ss_pred cCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCcc
Q 000916 203 SNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSS 282 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~ 282 (1225)
...+++|+|+|||||||+.-++........+..+-++.+-+-|++|+....+.|..+|..+ +.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~-----~~------------ 284 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF-----YP------------ 284 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCe-----ee------------
Confidence 3568899999999999999999876655556667788999999999988888876655322 00
Q ss_pred EEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcC----CCCceEEEEccc
Q 000916 283 IVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPS----YPHLRLILMSAT 358 (1225)
Q Consensus 283 I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~----~~~LKlILMSAT 358 (1225)
.....-+...+. -.++++||||=+- |.....-.+.-|+.++.. .+.-.+++||||
T Consensus 285 --~~~~~~l~~~l~------------------~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt 343 (432)
T PRK12724 285 --VKDIKKFKETLA------------------RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSST 343 (432)
T ss_pred --hHHHHHHHHHHH------------------hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 001122233332 1477899999765 333333444455554432 245678889999
Q ss_pred cc---HHHHHhhhCCC
Q 000916 359 LD---ADRFSQYFGGC 371 (1225)
Q Consensus 359 ld---~~~Fs~yF~~~ 371 (1225)
.. ...+.++|..+
T Consensus 344 ~~~~~~~~~~~~f~~~ 359 (432)
T PRK12724 344 SSYHHTLTVLKAYESL 359 (432)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 94 45566677643
No 158
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.72 E-value=0.00037 Score=84.07 Aligned_cols=131 Identities=19% Similarity=0.255 Sum_probs=83.7
Q ss_pred cCCeEEEEccCCCchhchHHHHHHHHH-hccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCc
Q 000916 203 SNQVVLISGETGCGKTTQVPQFLLEHI-WSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHS 281 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ILe~~-~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t 281 (1225)
.+.+++++|+||+||||.+-.+..... ...+..+-++.+-|-|++|.......+..++..+ .
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------~----------- 282 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------E----------- 282 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce------E-----------
Confidence 467999999999999999888776654 3345667788888999988766666655444221 0
Q ss_pred cEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc-C-CCCceEEEEcccc
Q 000916 282 SIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP-S-YPHLRLILMSATL 359 (1225)
Q Consensus 282 ~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~-~-~~~LKlILMSATl 359 (1225)
...++.-+...|. .+.++++||||.+- |.....-.+..|+.++. . ++.-..+++|||.
T Consensus 283 --~~~~~~~l~~~l~-----------------~~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~ 342 (424)
T PRK05703 283 --VVYDPKELAKALE-----------------QLRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATT 342 (424)
T ss_pred --ccCCHHhHHHHHH-----------------HhCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC
Confidence 1123333444443 34578999999996 33332233444555544 2 3555688899999
Q ss_pred cHHHH---HhhhCC
Q 000916 360 DADRF---SQYFGG 370 (1225)
Q Consensus 360 d~~~F---s~yF~~ 370 (1225)
....+ .+.|..
T Consensus 343 ~~~~l~~~~~~f~~ 356 (424)
T PRK05703 343 KYEDLKDIYKHFSR 356 (424)
T ss_pred CHHHHHHHHHHhCC
Confidence 65444 456653
No 159
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00041 Score=81.56 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=83.2
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccE
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSI 283 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I 283 (1225)
..++.++|+|||||||.+-...... ...+..+-++.+-|-|++|+.--...+...|..+ +
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L-~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~ 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF-HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------I 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------E
Confidence 3688999999999999987765543 3445556677888999888765544444332111 1
Q ss_pred EEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc-CCCCceEEEEccccc--
Q 000916 284 VFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP-SYPHLRLILMSATLD-- 360 (1225)
Q Consensus 284 ~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~-~~~~LKlILMSATld-- 360 (1225)
...++.-|.+.|..- ..-.++++||||-+= |.....-++.-|+.++. ..|+-.++.+|||..
T Consensus 301 v~~d~~~L~~aL~~l--------------k~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 301 AVRDEAAMTRALTYF--------------KEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred ecCCHHHHHHHHHHH--------------HhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 122455555555321 012368999999997 44554555666666654 456666777999983
Q ss_pred -HHHHHhhhCC
Q 000916 361 -ADRFSQYFGG 370 (1225)
Q Consensus 361 -~~~Fs~yF~~ 370 (1225)
...+.+.|..
T Consensus 366 d~~~i~~~F~~ 376 (436)
T PRK11889 366 DMIEIITNFKD 376 (436)
T ss_pred HHHHHHHHhcC
Confidence 3455666664
No 160
>PF13245 AAA_19: Part of AAA domain
Probab=97.70 E-value=0.00011 Score=67.37 Aligned_cols=58 Identities=21% Similarity=0.407 Sum_probs=48.6
Q ss_pred HHHHHHcCCeEEEEccCCCchhchHHHHHHHHHh--ccCCccEEEEecchHHHHHHHHHHH
Q 000916 197 ITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIW--SKGETCKIVCTQPRRISATSVAERI 255 (1225)
Q Consensus 197 Il~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~--~~~~~~~IicTQPRRiaAisvAeRV 255 (1225)
|..++..+.+++|.|+.|||||+.+-..+.+... ..+ .-+|+|..|+|.+|..+.+|+
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3446777899999999999999998888887763 233 568999999999999999998
No 161
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=97.67 E-value=0.0021 Score=82.80 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCC---CCCCceEEE
Q 000916 547 LIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRP---PPGCRKIIL 623 (1225)
Q Consensus 547 Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~---p~g~rKIIL 623 (1225)
||..||..+- ..+..||||-.=..-..-|.+.|.... |..--|-|++..+-|+..+++| ....--.+|
T Consensus 687 LLDKLL~rLk--~~GHrVLIFSQMVRmLDIL~eYL~~r~-------ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLL 757 (1373)
T KOG0384|consen 687 LLDKLLPRLK--EGGHRVLIFSQMVRMLDILAEYLSLRG-------YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLL 757 (1373)
T ss_pred eHHHHHHHHh--cCCceEEEhHHHHHHHHHHHHHHHHcC-------CcceeccCCcchHHHHHHHHhccCCCCCceEEEE
Confidence 5566666553 345789999432222233333343332 5555688999999888875554 444567789
Q ss_pred ecchhccccCCCCeEEEE--eCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHHHHhc-CCCC
Q 000916 624 STNIAETAITIDDVVYVI--DSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRAAS-LPDF 700 (1225)
Q Consensus 624 ATNIAEtSITI~dV~~VI--DsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~~~-m~~~ 700 (1225)
||-..--||.+-...-|| ||. |||.+.+ .|+=|+-|-|-..-=..|||.|+..|+. |-+-
T Consensus 758 STRAGGLGINLatADTVIIFDSD------WNPQNDL-----------QAqARaHRIGQkk~VnVYRLVTk~TvEeEilER 820 (1373)
T KOG0384|consen 758 STRAGGLGINLATADTVIIFDSD------WNPQNDL-----------QAQARAHRIGQKKHVNVYRLVTKNTVEEEILER 820 (1373)
T ss_pred ecccCcccccccccceEEEeCCC------CCcchHH-----------HHHHHHHhhcccceEEEEEEecCCchHHHHHHH
Confidence 999999999998887777 322 4444442 2445777777766678999999976642 1110
Q ss_pred CCCcccccChhhHHHHH
Q 000916 701 QVPEIKRIPIEELCLQV 717 (1225)
Q Consensus 701 ~~PEI~R~pL~~l~L~~ 717 (1225)
. =+.+-|+.++||.
T Consensus 821 A---k~KmvLD~aVIQ~ 834 (1373)
T KOG0384|consen 821 A---KLKMVLDHAVIQR 834 (1373)
T ss_pred H---HHHhhhHHHHHHh
Confidence 0 1245678888775
No 162
>cd02643 R3H_NF-X1 R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a transcription factor that regulates the expression of class II major histocompatibility complex (MHC) genes. The Drosophila homolog shuttle craft (STC) has been shown to be a DNA- or RNA-binding protein required for proper axon guidance in the central nervous system and, the yeast homolog FAP1 encodes a dosage suppressor of rapamycin toxicity. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=97.65 E-value=0.00013 Score=66.36 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhcC------CCceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEe
Q 000916 27 ATRIRISQILDGFLAS------KDEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVC 86 (1225)
Q Consensus 27 ~~~~~~~~~l~~f~~s------~~~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~ 86 (1225)
.+...+.+.|++|..+ ....+.||| |++.+|++||++|...||.|.|.|.|++|++.|.
T Consensus 9 ~~~~~vE~~l~~la~~~~~~~~~~~~~~l~P-M~~~eR~iIH~la~~~~l~S~S~G~ep~R~VvI~ 73 (74)
T cd02643 9 KFVKDVEKDLIELVESVNKGKQTSRSHSFPP-MNREKRRIVHELAEHFGIESVSYDQEPKRNVVAT 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCeeECCC-CCHHHHHHHHHHHhhCCCEEEecCCCCCceEEEe
Confidence 3444555555555553 346799998 9999999999999999999999999999999885
No 163
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.63 E-value=0.0005 Score=86.07 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHH
Q 000916 194 KDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAE 253 (1225)
Q Consensus 194 r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAe 253 (1225)
-+.|.+++.++++++|.++||+|||-.+....+...... ...+|+|+-|++..+.++.+
T Consensus 6 ~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~ 64 (636)
T TIGR03117 6 YLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWS 64 (636)
T ss_pred HHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHH
Confidence 367888899999999999999999998888887765421 23689999999999988886
No 164
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.63 E-value=0.00054 Score=86.13 Aligned_cols=144 Identities=18% Similarity=0.277 Sum_probs=92.1
Q ss_pred HcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCC--C
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGG--K 279 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s--~ 279 (1225)
..+.|.+|.++.||||||++-.|+-+... ....+|++.-=||-.+.+++.|....- +..-+-|.--.+.... +
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~~---l~gFv~Y~d~~~~~i~~~~ 121 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKAG---LSGFVNYLDSDDYIIDGRP 121 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhcC---CCcceeeeccccccccccc
Confidence 46789999999999999999888876532 234589999999999999999985431 1122223221111111 2
Q ss_pred CccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccc--cccch------hHHHHHHHHhCcCCCCce
Q 000916 280 HSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE--RDRYS------DFMLAIIRDMLPSYPHLR 351 (1225)
Q Consensus 280 ~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE--R~~~t------D~LL~lLk~ll~~~~~LK 351 (1225)
..++++|=+- |.|. .. +.+.+|++||||||-. +.+++ .-.+.+|+.++... -+
T Consensus 122 ~~rLivqIdS-L~R~-~~---------------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~a--k~ 182 (824)
T PF02399_consen 122 YDRLIVQIDS-LHRL-DG---------------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNA--KT 182 (824)
T ss_pred cCeEEEEehh-hhhc-cc---------------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhC--Ce
Confidence 3567777543 3332 11 3688899999999963 11222 23455666666543 48
Q ss_pred EEEEcccccHHH--HHhhhC
Q 000916 352 LILMSATLDADR--FSQYFG 369 (1225)
Q Consensus 352 lILMSATld~~~--Fs~yF~ 369 (1225)
||+|-||++... |-+.+.
T Consensus 183 VI~~DA~ln~~tvdFl~~~R 202 (824)
T PF02399_consen 183 VIVMDADLNDQTVDFLASCR 202 (824)
T ss_pred EEEecCCCCHHHHHHHHHhC
Confidence 999999997543 334444
No 165
>PF05729 NACHT: NACHT domain
Probab=97.62 E-value=0.00035 Score=72.11 Aligned_cols=61 Identities=18% Similarity=0.404 Sum_probs=44.4
Q ss_pred EEEeccccccccchhH-----HHHHHHHhCcC--CCCceEEEEcccccHHHHHhhhCCCCeEecCCcc
Q 000916 320 HIIVDEIHERDRYSDF-----MLAIIRDMLPS--YPHLRLILMSATLDADRFSQYFGGCPVIQVPGFT 380 (1225)
Q Consensus 320 hVIvDEvHER~~~tD~-----LL~lLk~ll~~--~~~LKlILMSATld~~~Fs~yF~~~pvi~I~gr~ 380 (1225)
.||||=++|-....+. +..+|+.++.. .++.|+|+.|.+-....+.+++.....+.|++.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 3888888886554433 56666666655 6889999999888777788888876666666554
No 166
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.62 E-value=0.0071 Score=75.14 Aligned_cols=111 Identities=18% Similarity=0.276 Sum_probs=86.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCc--eEEEecchhccccCCCCeE
Q 000916 561 DGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCR--KIILSTNIAETAITIDDVV 638 (1225)
Q Consensus 561 ~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~r--KIILATNIAEtSITI~dV~ 638 (1225)
+..||+|-....-+.-+...|.. ...|..+-+-|.-+...|..+.++|..+.- -.+|+|-+.--|+++-+..
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~------~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAn 619 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRR------AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGAN 619 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHh------cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCc
Confidence 45899998877766666555542 235889999999999999999998886653 3568899999999998887
Q ss_pred EEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHH
Q 000916 639 YVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQL 692 (1225)
Q Consensus 639 ~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~ 692 (1225)
-|| .|||.-+ |-.=..|.-|+-|-|-...=+.|||.|..
T Consensus 620 RVI--------IfDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 620 RVI--------IFDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred eEE--------EECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCC
Confidence 777 6777654 33445688899999999889999999864
No 167
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=97.60 E-value=0.015 Score=73.68 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=73.0
Q ss_pred EEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcC---CCCCCceEEEecchhccccCCCCeEEEEe
Q 000916 566 VFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKR---PPPGCRKIILSTNIAETAITIDDVVYVID 642 (1225)
Q Consensus 566 VFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~---~p~g~rKIILATNIAEtSITI~dV~~VID 642 (1225)
|...-+..+..+.+.+.... .+.++.|||.|+..+|+++.+. ++....-.++||-...-||.+-+..-||
T Consensus 599 v~Isny~~tldl~e~~~~~~------g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli- 671 (776)
T KOG0390|consen 599 VLISNYTQTLDLFEQLCRWR------GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI- 671 (776)
T ss_pred EEeccHHHHHHHHHHHHhhc------CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE-
Confidence 33455555555555554321 4889999999999999998554 4444444566788888899987777777
Q ss_pred CCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCH
Q 000916 643 SGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQ 691 (1225)
Q Consensus 643 sG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~ 691 (1225)
.||+.-| |.---+|.=|+=|-|-.+|=+.|||.+.
T Consensus 672 -------l~D~dWN-------Pa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 672 -------LFDPDWN-------PAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred -------EeCCCCC-------chhHHHHHHHhccCCCcceEEEEEeecC
Confidence 5666543 2233356668888888889999999986
No 168
>cd02644 R3H_jag R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ. SpoIIIJ is necessary for the third stage of sporulation. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=97.55 E-value=0.00027 Score=63.15 Aligned_cols=55 Identities=16% Similarity=0.310 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCHHHHHHHHHHHHHcC-CeeeccCCCCceEEEEec
Q 000916 31 RISQILDGFLASKDEVYTFDANLSNRERAVVHEVCKKMG-MTSKSSGRGKQRRVSVCK 87 (1225)
Q Consensus 31 ~~~~~l~~f~~s~~~e~~f~~~~~~~eR~~ih~~a~~lG-L~sks~g~g~~r~l~v~k 87 (1225)
.......+-+. ....+.|+| |++.||++||+++++++ |.|.|.|.|++|+|.|+.
T Consensus 11 ~A~~~a~~v~~-tg~~~~l~P-M~~~eRrivH~~~~~~~~l~T~S~G~~~~R~vvI~~ 66 (67)
T cd02644 11 LAERAAEKVRR-TGKPVKLEP-MNAYERRIIHDALANDEDVETESEGEGPYRRVVISP 66 (67)
T ss_pred HHHHHHHHHHH-HCCeeEeCC-CCHHHHHHHHHHHHhCCCceEEeecCCCCeEEEEEe
Confidence 33444444444 445699988 99999999999999987 999999999999999975
No 169
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.48 E-value=0.0005 Score=74.49 Aligned_cols=123 Identities=22% Similarity=0.282 Sum_probs=69.5
Q ss_pred HHHHHHHHHH-Hc-CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEE
Q 000916 192 SFKDVITSTV-DS-NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGY 269 (1225)
Q Consensus 192 ~~r~eIl~aI-~~-~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY 269 (1225)
..|.+.+..+ .+ +++++|.|+.||||||.+-. +.+.+...+ .+|+.+-|+.-+|..+.++. |
T Consensus 4 ~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~g--~~v~~~apT~~Aa~~L~~~~--------~----- 67 (196)
T PF13604_consen 4 EEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAAG--KRVIGLAPTNKAAKELREKT--------G----- 67 (196)
T ss_dssp HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHTT----EEEEESSHHHHHHHHHHH--------T-----
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhCC--CeEEEECCcHHHHHHHHHhh--------C-----
Confidence 3456666666 43 36999999999999997644 545444433 68999999999888877763 1
Q ss_pred EEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCC
Q 000916 270 KIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPH 349 (1225)
Q Consensus 270 ~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~ 349 (1225)
+-..|-.-++....... ......+...++|||||+- .++...+..+++.+-. .+
T Consensus 68 -------------~~a~Ti~~~l~~~~~~~---------~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~--~~ 121 (196)
T PF13604_consen 68 -------------IEAQTIHSFLYRIPNGD---------DEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK--SG 121 (196)
T ss_dssp -------------S-EEEHHHHTTEECCEE---------CCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T---T
T ss_pred -------------cchhhHHHHHhcCCccc---------ccccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh--cC
Confidence 11122222221111100 0000125677899999997 4555556656654422 35
Q ss_pred ceEEEEc
Q 000916 350 LRLILMS 356 (1225)
Q Consensus 350 LKlILMS 356 (1225)
.|||++-
T Consensus 122 ~klilvG 128 (196)
T PF13604_consen 122 AKLILVG 128 (196)
T ss_dssp -EEEEEE
T ss_pred CEEEEEC
Confidence 7888874
No 170
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00093 Score=78.43 Aligned_cols=132 Identities=17% Similarity=0.226 Sum_probs=83.7
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCC
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKH 280 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~ 280 (1225)
+..+.+++++|+|||||||.+-...... ..++..+.++.+-|-|++|+..-...+...+..+ .
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l-~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv------~---------- 265 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQL-LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL------I---------- 265 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE------E----------
Confidence 3468899999999999999987776543 3345567788999999988765554444332110 0
Q ss_pred ccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc-CCCCceEEEEcccc
Q 000916 281 SSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP-SYPHLRLILMSATL 359 (1225)
Q Consensus 281 t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~-~~~~LKlILMSATl 359 (1225)
+..++.-|.+.+..- ....++++||||=+= |+..-+-++..|+.++. ..|++-++++|||.
T Consensus 266 ---~~~dp~dL~~al~~l--------------~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~ 327 (407)
T PRK12726 266 ---VATSPAELEEAVQYM--------------TYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGM 327 (407)
T ss_pred ---ecCCHHHHHHHHHHH--------------HhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcc
Confidence 012344444433321 123578999999996 44444455556666553 35777788899988
Q ss_pred cHHHHHhh
Q 000916 360 DADRFSQY 367 (1225)
Q Consensus 360 d~~~Fs~y 367 (1225)
......+.
T Consensus 328 ~~~d~~~i 335 (407)
T PRK12726 328 KSADVMTI 335 (407)
T ss_pred cHHHHHHH
Confidence 65444443
No 171
>PRK14974 cell division protein FtsY; Provisional
Probab=97.38 E-value=0.002 Score=75.24 Aligned_cols=134 Identities=18% Similarity=0.257 Sum_probs=79.6
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccE
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSI 283 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I 283 (1225)
..+++++|++|+||||.+-.+.. .+...+..+-++.+-+-|.+|+.-.+..+...|..+- . .......
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~-~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~-----~----~~~g~dp-- 207 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY-YLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVI-----K----HKYGADP-- 207 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH-HHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCcee-----c----ccCCCCH--
Confidence 46899999999999998766553 2223344444555667888887766667666654321 0 0000100
Q ss_pred EEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc-CCCCceEEEEcccccHH
Q 000916 284 VFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP-SYPHLRLILMSATLDAD 362 (1225)
Q Consensus 284 ~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~-~~~~LKlILMSATld~~ 362 (1225)
.-++.+.+..- ...++++||||.++ |...-.-++.-|+.+.. ..|+..++++|||...+
T Consensus 208 ----~~v~~~ai~~~---------------~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 208 ----AAVAYDAIEHA---------------KARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred ----HHHHHHHHHHH---------------HhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 11222323221 23567899999998 44433444555666543 35889999999998433
Q ss_pred HH--HhhhC
Q 000916 363 RF--SQYFG 369 (1225)
Q Consensus 363 ~F--s~yF~ 369 (1225)
.. +++|.
T Consensus 268 ~~~~a~~f~ 276 (336)
T PRK14974 268 AVEQAREFN 276 (336)
T ss_pred HHHHHHHHH
Confidence 22 44554
No 172
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.001 Score=81.12 Aligned_cols=126 Identities=16% Similarity=0.236 Sum_probs=74.3
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhcc-CCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCC
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSK-GETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGK 279 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~-~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~ 279 (1225)
+..+++++|+|+||+||||.+-.+........ +..+.++.+-+.|+++.......+ ..+| ..++.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya----~iLg----v~v~~------ 412 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYG----RQLG----IAVHE------ 412 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhh----cccC----ceeEe------
Confidence 45689999999999999999877665443322 344667777788988764443332 2222 11110
Q ss_pred CccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccc
Q 000916 280 HSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATL 359 (1225)
Q Consensus 280 ~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATl 359 (1225)
..+.+-|...|. .+.++++||||.+--. .....+...|..+......-.+++++++.
T Consensus 413 -----a~d~~~L~~aL~-----------------~l~~~DLVLIDTaG~s-~~D~~l~eeL~~L~aa~~~a~lLVLpAts 469 (559)
T PRK12727 413 -----ADSAESLLDLLE-----------------RLRDYKLVLIDTAGMG-QRDRALAAQLNWLRAARQVTSLLVLPANA 469 (559)
T ss_pred -----cCcHHHHHHHHH-----------------HhccCCEEEecCCCcc-hhhHHHHHHHHHHHHhhcCCcEEEEECCC
Confidence 113344444443 3567899999999732 22223333343332233445788899988
Q ss_pred cHHH
Q 000916 360 DADR 363 (1225)
Q Consensus 360 d~~~ 363 (1225)
....
T Consensus 470 s~~D 473 (559)
T PRK12727 470 HFSD 473 (559)
T ss_pred ChhH
Confidence 4433
No 173
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.34 E-value=0.0039 Score=73.44 Aligned_cols=125 Identities=19% Similarity=0.292 Sum_probs=94.4
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHH-hccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCcc
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHI-WSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSS 282 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~-~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~ 282 (1225)
+.|+.++|+||-||||-+-..-.-.. ..+...+.||-|---||.|..--+.-|.-+|..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------------------
Confidence 89999999999999998877655544 2345567899999999999988888888887653
Q ss_pred EEEEccHH-HHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCc-eEEEEccccc
Q 000916 283 IVFCTNGV-LLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHL-RLILMSATLD 360 (1225)
Q Consensus 283 I~f~T~Gv-LLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~L-KlILMSATld 360 (1225)
.+|.+.. |...+. .|.+++||.||=+- |+..-...+.-|+.++..-.++ --+++|||..
T Consensus 264 -~vv~~~~el~~ai~-----------------~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K 324 (407)
T COG1419 264 -EVVYSPKELAEAIE-----------------ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTK 324 (407)
T ss_pred -EEecCHHHHHHHHH-----------------HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcc
Confidence 3444443 444443 57899999999998 8877778888899888765444 5567999996
Q ss_pred HHHHHh
Q 000916 361 ADRFSQ 366 (1225)
Q Consensus 361 ~~~Fs~ 366 (1225)
.+....
T Consensus 325 ~~dlke 330 (407)
T COG1419 325 YEDLKE 330 (407)
T ss_pred hHHHHH
Confidence 555443
No 174
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0019 Score=77.40 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=83.4
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhcc-CCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCC
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSK-GETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGK 279 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~-~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~ 279 (1225)
+..+.++.++|+||+||||.+-.......... .....++++-.-|+.+...-...+.-+|..+- +.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v----------- 254 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SI----------- 254 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cC-----------
Confidence 35688999999999999999976655433322 23456788888899988776666655543210 00
Q ss_pred CccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCC-CCceEEEEccc
Q 000916 280 HSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSY-PHLRLILMSAT 358 (1225)
Q Consensus 280 ~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~-~~LKlILMSAT 358 (1225)
-+..-+...+. .+.++.+|+||.+= |...-+-++..|+.+.... +.-.++++|||
T Consensus 255 ------~~~~dl~~al~-----------------~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at 310 (420)
T PRK14721 255 ------KDIADLQLMLH-----------------ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNAT 310 (420)
T ss_pred ------CCHHHHHHHHH-----------------HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCC
Confidence 01111222222 36778999999974 5544455677777765433 34456779999
Q ss_pred ccHH---HHHhhhCC
Q 000916 359 LDAD---RFSQYFGG 370 (1225)
Q Consensus 359 ld~~---~Fs~yF~~ 370 (1225)
...+ ....+|..
T Consensus 311 ~~~~~~~~~~~~f~~ 325 (420)
T PRK14721 311 SSGDTLDEVISAYQG 325 (420)
T ss_pred CCHHHHHHHHHHhcC
Confidence 8544 44556654
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.28 E-value=0.00082 Score=73.10 Aligned_cols=55 Identities=29% Similarity=0.396 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecch
Q 000916 189 PISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPR 244 (1225)
Q Consensus 189 Pi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPR 244 (1225)
|....|...+++|.++++|++.|+.|||||...-..-++.... +..-+|+++.|.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~ 58 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPP 58 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecC
Confidence 6677889999999999999999999999998887777777654 555699999885
No 176
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.27 E-value=0.0019 Score=83.05 Aligned_cols=132 Identities=21% Similarity=0.194 Sum_probs=80.6
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccC
Q 000916 185 RSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIG 264 (1225)
Q Consensus 185 R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG 264 (1225)
.........|.+.+..+..+++++|+|..|+||||.+- .|++.+...+....|+++-|+--||.. +++..|..
T Consensus 319 ~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~~~~~~v~l~ApTg~AA~~----L~e~~g~~-- 391 (720)
T TIGR01448 319 KLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEELGGLLPVGLAAPTGRAAKR----LGEVTGLT-- 391 (720)
T ss_pred hcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCceEEEEeCchHHHHH----HHHhcCCc--
Confidence 34456778888889999999999999999999999774 444444333323579999999888754 33322210
Q ss_pred CeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhC
Q 000916 265 DNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDML 344 (1225)
Q Consensus 265 ~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll 344 (1225)
-.|--.||....... .... .......++|||||++ .++...+..+|+.+
T Consensus 392 --------------------a~Tih~lL~~~~~~~-------~~~~-~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~~- 440 (720)
T TIGR01448 392 --------------------ASTIHRLLGYGPDTF-------RHNH-LEDPIDCDLLIVDESS--MMDTWLALSLLAAL- 440 (720)
T ss_pred --------------------cccHHHHhhccCCcc-------chhh-hhccccCCEEEEeccc--cCCHHHHHHHHHhC-
Confidence 011112221110000 0000 0123457899999999 46666676666632
Q ss_pred cCCCCceEEEEc
Q 000916 345 PSYPHLRLILMS 356 (1225)
Q Consensus 345 ~~~~~LKlILMS 356 (1225)
.++.||||+-
T Consensus 441 --~~~~rlilvG 450 (720)
T TIGR01448 441 --PDHARLLLVG 450 (720)
T ss_pred --CCCCEEEEEC
Confidence 3578888874
No 177
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.26 E-value=0.0028 Score=63.02 Aligned_cols=50 Identities=14% Similarity=0.321 Sum_probs=30.9
Q ss_pred HHHHHHHHHc--CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHH
Q 000916 194 KDVITSTVDS--NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRI 246 (1225)
Q Consensus 194 r~eIl~aI~~--~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRi 246 (1225)
.++|...+.. +.+++|.|++||||||.+ ..+....... ...+++......
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~-~~i~~~~~~~--~~~v~~~~~~~~ 58 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLA-RAIANELFRP--GAPFLYLNASDL 58 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHH-HHHHHHhhcC--CCCeEEEehhhh
Confidence 3455666665 789999999999999744 4454443322 234555444433
No 178
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.25 E-value=0.0012 Score=82.81 Aligned_cols=144 Identities=25% Similarity=0.338 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHh-ccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEE
Q 000916 192 SFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIW-SKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYK 270 (1225)
Q Consensus 192 ~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~-~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~ 270 (1225)
..|.+.+.....++++||+|++||||||.+-.++..-.. ..+..++|+++-|+.-||..+.+++..... .++..
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~~---- 229 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPLT---- 229 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-ccccc----
Confidence 455555566667899999999999999998776654321 223457899999999999999888754331 22110
Q ss_pred EeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCc
Q 000916 271 IRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHL 350 (1225)
Q Consensus 271 IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~L 350 (1225)
... ...|- -....+-|.|...+.. ..........-.+++|||||+- .++...+..+++.+ .++-
T Consensus 230 ----~~~--~~~~~-~~a~TiHrlLg~~~~~----~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~al---~~~~ 293 (615)
T PRK10875 230 ----DEQ--KKRIP-EEASTLHRLLGAQPGS----QRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDAL---PPHA 293 (615)
T ss_pred ----hhh--hhcCC-CchHHHHHHhCcCCCc----cchhhccccCCCCCeEEEChHh--cccHHHHHHHHHhc---ccCC
Confidence 000 00000 0112233333222100 0000000123456899999997 45666666666642 4678
Q ss_pred eEEEEc
Q 000916 351 RLILMS 356 (1225)
Q Consensus 351 KlILMS 356 (1225)
||||+-
T Consensus 294 rlIlvG 299 (615)
T PRK10875 294 RVIFLG 299 (615)
T ss_pred EEEEec
Confidence 999874
No 179
>cd02645 R3H_AAA R3H domain of a group of proteins with unknown function, who also contain a AAA-ATPase (AAA) domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA or ssRNA in a sequence-specific manner.
Probab=97.24 E-value=0.00097 Score=58.17 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCHHHHHHHHHHHHHcCCeeeccCCCCceEEEEe
Q 000916 31 RISQILDGFLASKDEVYTFDANLSNRERAVVHEVCKKMGMTSKSSGRGKQRRVSVC 86 (1225)
Q Consensus 31 ~~~~~l~~f~~s~~~e~~f~~~~~~~eR~~ih~~a~~lGL~sks~g~g~~r~l~v~ 86 (1225)
..+.++++-+.++.+...+.| ++..+|+.+|++++..||.|.|.|.|++|+|.|+
T Consensus 5 ea~~aa~~V~~~~~~~veL~P-m~~~eRri~H~~v~~~~l~s~S~G~ep~RrvvI~ 59 (60)
T cd02645 5 EARLAIEQVVIPKGEPVELLP-RSAYIRRLQHDLVERYQLRSESFGSEPNRRLRIL 59 (60)
T ss_pred HHHHHHHHHHhcCCceEEcCC-CCHHHHHHHHHHHHHCCCeEEEecCCCCcEEEEe
Confidence 456667777777767789987 9999999999999999999999999999999986
No 180
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.18 E-value=0.0024 Score=79.98 Aligned_cols=144 Identities=22% Similarity=0.260 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHH--hccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEE
Q 000916 192 SFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHI--WSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGY 269 (1225)
Q Consensus 192 ~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~--~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY 269 (1225)
..|.+.+.....+++++|+|..|+||||.+-..|..-. .......+|+++-|+--||..+.+.+..... .++..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 45666777777899999999999999998877654321 1111135899999999999888887755432 12110
Q ss_pred EEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCC
Q 000916 270 KIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPH 349 (1225)
Q Consensus 270 ~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~ 349 (1225)
........+...|--.||.. .+.. .. ..........+++|||||+= .++...+..+++.+ .++
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~---~~~~---~~-~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~al---~~~ 286 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGI---KPDT---KR-FRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKAL---PPN 286 (586)
T ss_pred -----hhhhhccccccchhhhhhcc---cCCc---ch-hhhcccCCCcccEEEEcccc--cCCHHHHHHHHHhc---CCC
Confidence 00000001112232222221 1100 00 00000123367999999996 46666666666633 467
Q ss_pred ceEEEEc
Q 000916 350 LRLILMS 356 (1225)
Q Consensus 350 LKlILMS 356 (1225)
-||||+-
T Consensus 287 ~rlIlvG 293 (586)
T TIGR01447 287 TKLILLG 293 (586)
T ss_pred CEEEEEC
Confidence 8888863
No 181
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0043 Score=78.97 Aligned_cols=126 Identities=19% Similarity=0.225 Sum_probs=83.9
Q ss_pred cCCeEEEEccCCCchhchHHHHHHHHHhccC-CccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCc
Q 000916 203 SNQVVLISGETGCGKTTQVPQFLLEHIWSKG-ETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHS 281 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~-~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t 281 (1225)
.+.|+.++|+||+||||.+-..........+ ...-++.+-+-|++|+..-+..++.+|..+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------ 245 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------ 245 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc------------------
Confidence 4679999999999999998766654323333 345566677789998776665655544321
Q ss_pred cEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc-CCCCceEEEEccccc
Q 000916 282 SIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP-SYPHLRLILMSATLD 360 (1225)
Q Consensus 282 ~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~-~~~~LKlILMSATld 360 (1225)
.+..++.-+...|. .+.++++||||=+= |+..-.-++..++.+.. ..|.-.++++|||..
T Consensus 246 -~~~~~~~~l~~al~-----------------~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 246 -HAVKDAADLRFALA-----------------ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH 306 (767)
T ss_pred -cccCCHHHHHHHHH-----------------HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCc
Confidence 11125555544443 35678999999997 44433446777777653 457778899999996
Q ss_pred HHHHH
Q 000916 361 ADRFS 365 (1225)
Q Consensus 361 ~~~Fs 365 (1225)
.+.|.
T Consensus 307 ~~~l~ 311 (767)
T PRK14723 307 GDTLN 311 (767)
T ss_pred HHHHH
Confidence 65554
No 182
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.03 E-value=0.0075 Score=68.61 Aligned_cols=140 Identities=17% Similarity=0.088 Sum_probs=65.7
Q ss_pred HcCCeEEEEccCCCchhchHHHHHHHHHhcc--CCccEEEEecchHHHHHHHHHHHHHHhCC-ccCCeEEEEEeec----
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFLLEHIWSK--GETCKIVCTQPRRISATSVAERISVERGE-NIGDNIGYKIRLE---- 274 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~--~~~~~IicTQPRRiaAisvAeRVa~Erge-~lG~~VGY~IR~e---- 274 (1225)
....-.+++-++|+|||.+.-.++..-.... .....++|..|..+.. +-.+.+..-... .+ .+-+-...+
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~-~W~~E~~~~~~~~~~--~v~~~~~~~~~~~ 99 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLS-QWKEEIEKWFDPDSL--RVIIYDGDSERRR 99 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHH-HHHHHHHHHSGT-TS---EEEESSSCHHHH
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhh-hhhhhhccccccccc--ccccccccccccc
Confidence 3556788899999999998887776322211 1112366666764432 222223222211 11 111111111
Q ss_pred --ccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccccc-ccchhHHHHHHHHhCcCCCCce
Q 000916 275 --SKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHER-DRYSDFMLAIIRDMLPSYPHLR 351 (1225)
Q Consensus 275 --s~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER-~~~tD~LL~lLk~ll~~~~~LK 351 (1225)
...-....++++|...+...-..... ..+ .. -++..|||||+|.- +..+-.. ..++. +. .-+
T Consensus 100 ~~~~~~~~~~vvi~ty~~~~~~~~~~~~--------~~l-~~-~~~~~vIvDEaH~~k~~~s~~~-~~l~~-l~---~~~ 164 (299)
T PF00176_consen 100 LSKNQLPKYDVVITTYETLRKARKKKDK--------EDL-KQ-IKWDRVIVDEAHRLKNKDSKRY-KALRK-LR---ARY 164 (299)
T ss_dssp TTSSSCCCSSEEEEEHHHHH--TSTHTT--------HHH-HT-SEEEEEEETTGGGGTTTTSHHH-HHHHC-CC---ECE
T ss_pred ccccccccceeeeccccccccccccccc--------ccc-cc-ccceeEEEeccccccccccccc-ccccc-cc---cce
Confidence 12234568999999998810000000 000 11 24889999999973 3444332 23333 22 457
Q ss_pred EEEEcccc
Q 000916 352 LILMSATL 359 (1225)
Q Consensus 352 lILMSATl 359 (1225)
.++||||.
T Consensus 165 ~~lLSgTP 172 (299)
T PF00176_consen 165 RWLLSGTP 172 (299)
T ss_dssp EEEE-SS-
T ss_pred EEeecccc
Confidence 78899997
No 183
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.96 E-value=0.013 Score=68.23 Aligned_cols=128 Identities=18% Similarity=0.295 Sum_probs=79.5
Q ss_pred cCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCcc
Q 000916 203 SNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSS 282 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~ 282 (1225)
..++++++|++|+||||.+-....-.. ..+..+.++.+-+.|.+|+.-....+..++ +++... . .....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~------i~~~~~-~--~~~dp- 181 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDTFRAAAIEQLQVWGERVG------VPVIAQ-K--EGADP- 181 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCccchhhHHHHHHHHHHcC------ceEEEe-C--CCCCH-
Confidence 467999999999999998766544322 334556667777888888776665555544 232111 1 11111
Q ss_pred EEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhC-------cCCCCceEEEE
Q 000916 283 IVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDML-------PSYPHLRLILM 355 (1225)
Q Consensus 283 I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll-------~~~~~LKlILM 355 (1225)
.-+....+... ...++++||||=+- |....+-++..|+.+. +..|+-.++++
T Consensus 182 -----a~~v~~~l~~~---------------~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl 240 (318)
T PRK10416 182 -----ASVAFDAIQAA---------------KARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVL 240 (318)
T ss_pred -----HHHHHHHHHHH---------------HhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEE
Confidence 01112222221 34678999999997 6666666666666543 34678889999
Q ss_pred cccccHH
Q 000916 356 SATLDAD 362 (1225)
Q Consensus 356 SATld~~ 362 (1225)
+||...+
T Consensus 241 ~a~~g~~ 247 (318)
T PRK10416 241 DATTGQN 247 (318)
T ss_pred ECCCChH
Confidence 9998443
No 184
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.96 E-value=0.0095 Score=67.74 Aligned_cols=133 Identities=18% Similarity=0.265 Sum_probs=78.0
Q ss_pred cCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCcc
Q 000916 203 SNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSS 282 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~ 282 (1225)
..+++++.|++|+||||.+-...... ..++...-++.+-+.|++++.--...+. ..| +.+...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~~~~~v~~i~~D~~ri~~~~ql~~~~~----~~~----~~~~~~-------- 136 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HGKKKTVGFITTDHSRIGTVQQLQDYVK----TIG----FEVIAV-------- 136 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHHHHhh----hcC----ceEEec--------
Confidence 55899999999999999876554332 2334456677777888877654332222 222 222110
Q ss_pred EEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc-CCCCceEEEEcccc--
Q 000916 283 IVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP-SYPHLRLILMSATL-- 359 (1225)
Q Consensus 283 I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~-~~~~LKlILMSATl-- 359 (1225)
-++.-|.+.|..- ....++++||||-+= |...-+-++.-|+.++. ..|+..++++|||.
T Consensus 137 ---~~~~~l~~~l~~l--------------~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 137 ---RDEAAMTRALTYF--------------KEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred ---CCHHHHHHHHHHH--------------HhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 1233333333210 022478999999996 44433445555555543 35677778899998
Q ss_pred -cHHHHHhhhCC
Q 000916 360 -DADRFSQYFGG 370 (1225)
Q Consensus 360 -d~~~Fs~yF~~ 370 (1225)
|...+.+.|..
T Consensus 199 ~d~~~~~~~f~~ 210 (270)
T PRK06731 199 KDMIEIITNFKD 210 (270)
T ss_pred HHHHHHHHHhCC
Confidence 44455666653
No 185
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.95 E-value=0.0081 Score=73.28 Aligned_cols=131 Identities=21% Similarity=0.284 Sum_probs=78.2
Q ss_pred HcCCeEEEEccCCCchhchHHHHHHHHHhccC-CccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCC
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFLLEHIWSKG-ETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKH 280 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~-~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~ 280 (1225)
..+.|+.++|+||+||||.+-..........| ...-++.+-+-|++|+...+..+..+|..+ .
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv------~---------- 317 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV------H---------- 317 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe------e----------
Confidence 34679999999999999998776654433333 245567778889999887777777665321 0
Q ss_pred ccEEEEccH-HHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCC-CCceEEEEccc
Q 000916 281 SSIVFCTNG-VLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSY-PHLRLILMSAT 358 (1225)
Q Consensus 281 t~I~f~T~G-vLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~-~~LKlILMSAT 358 (1225)
.+.++ -+...+. .|.++.+|+||.+= |...-..+...+..+.... |.-++++++||
T Consensus 318 ----~~~~~~Dl~~aL~-----------------~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt 375 (484)
T PRK06995 318 ----AVKDAADLRLALS-----------------ELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNAT 375 (484)
T ss_pred ----ccCCchhHHHHHH-----------------hccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCC
Confidence 00111 1222222 46788899999975 4332222222233222111 44478889999
Q ss_pred ccHHHH---HhhhCC
Q 000916 359 LDADRF---SQYFGG 370 (1225)
Q Consensus 359 ld~~~F---s~yF~~ 370 (1225)
.....+ .+.|..
T Consensus 376 ~~~~~l~~i~~~f~~ 390 (484)
T PRK06995 376 SHGDTLNEVVQAYRG 390 (484)
T ss_pred CcHHHHHHHHHHhcc
Confidence 865544 445553
No 186
>PRK06526 transposase; Provisional
Probab=96.92 E-value=0.0033 Score=70.93 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=22.7
Q ss_pred HHHHcCCeEEEEccCCCchhchHHHHHHHH
Q 000916 199 STVDSNQVVLISGETGCGKTTQVPQFLLEH 228 (1225)
Q Consensus 199 ~aI~~~~VvII~GeTGsGKTTQvPq~ILe~ 228 (1225)
+.+..++.+++.|++|+|||+..--...+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 346678899999999999998665544433
No 187
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.85 E-value=0.0062 Score=68.94 Aligned_cols=130 Identities=19% Similarity=0.182 Sum_probs=80.2
Q ss_pred hcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhC---C
Q 000916 185 RSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERG---E 261 (1225)
Q Consensus 185 R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erg---e 261 (1225)
++.+-...+--+++.++.-++--|+.=.||=|||..+....+=.++ .|..+.|+++-+ .+|+|=+++++ +
T Consensus 71 ~r~~g~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL-~G~~V~vvT~Nd------yLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 71 RRTLGLRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNAL-QGKGVHVVTSND------YLAKRDAEEMRPFYE 143 (266)
T ss_dssp HHHTS----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHT-TSS-EEEEESSH------HHHHHHHHHHHHHHH
T ss_pred HHHcCCcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHH-hcCCcEEEeccH------HHhhccHHHHHHHHH
Confidence 4566777777778887655444477889999999876555443333 456688888765 47777777764 4
Q ss_pred ccCCeEEEEEeecccCC----CCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccc
Q 000916 262 NIGDNIGYKIRLESKGG----KHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH 327 (1225)
Q Consensus 262 ~lG~~VGY~IR~es~~s----~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvH 327 (1225)
.+|-+||+...-.+... =...|+|+|.+-|-.-...|.+.. ........+..++|||||+
T Consensus 144 ~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~------~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLAL------SKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp HTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-S------SGGG--SSSSSEEEECTHH
T ss_pred HhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhh------ccchhccCCCCEEEEeccc
Confidence 67999998765433111 135799999998876555443211 1111235788999999998
No 188
>PF13173 AAA_14: AAA domain
Probab=96.84 E-value=0.0041 Score=62.48 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=23.3
Q ss_pred cCCeEEEEccCCCchhchHHHHHHHHH
Q 000916 203 SNQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
++++++|.|+.||||||.+=|++-+..
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999988876553
No 189
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.67 E-value=0.0058 Score=74.26 Aligned_cols=63 Identities=19% Similarity=0.393 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHcC-CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHH
Q 000916 191 SSFKDVITSTVDSN-QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERIS 256 (1225)
Q Consensus 191 ~~~r~eIl~aI~~~-~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa 256 (1225)
...|.+++.+..++ .+.+|.||+|+|||+-+.-.|...... +-+|+|+-|+.+|.-.+-+|..
T Consensus 187 n~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 187 NSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CCeEEEEcCchHHHHHHHHHhc
Confidence 34555666665555 788899999999999888887766543 2589999999999988888743
No 190
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.64 E-value=0.007 Score=69.36 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=43.0
Q ss_pred cCCeEEEEccCCCchhchHHHHHHHHHhcc-CCccEEEEecchHHHHHHHHHHHHHHhC
Q 000916 203 SNQVVLISGETGCGKTTQVPQFLLEHIWSK-GETCKIVCTQPRRISATSVAERISVERG 260 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ILe~~~~~-~~~~~IicTQPRRiaAisvAeRVa~Erg 260 (1225)
...+++|+|+||+||||.+-.+........ +..+.++.+-|-|++|.......+..++
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~ 251 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILG 251 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhC
Confidence 456899999999999999887766554332 3567888999999988766665554433
No 191
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.61 E-value=0.016 Score=74.91 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=77.0
Q ss_pred CCChHHHHHHHHHHHc-CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCe
Q 000916 188 LPISSFKDVITSTVDS-NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDN 266 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~~-~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~ 266 (1225)
......|.+.+..+.. +++++|+|..|+||||.+=. |.+.+... ..+|+++-|+-.||..+.+ ..|..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~~--g~~V~~~ApTg~Aa~~L~~--------~~g~~ 419 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEAA--GYRVIGAALSGKAAEGLQA--------ESGIE 419 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHhC--CCeEEEEeCcHHHHHHHHh--------ccCCc
Confidence 3455667777777655 68999999999999987654 34433222 3578999999887755543 11210
Q ss_pred EEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcC
Q 000916 267 IGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPS 346 (1225)
Q Consensus 267 VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~ 346 (1225)
-.|--.++..+..+. ..+...++|||||+- .++++.+..+|+.+..
T Consensus 420 ------------------a~Ti~~~~~~~~~~~-------------~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~~- 465 (744)
T TIGR02768 420 ------------------SRTLASLEYAWANGR-------------DLLSDKDVLVIDEAG--MVGSRQMARVLKEAEE- 465 (744)
T ss_pred ------------------eeeHHHHHhhhccCc-------------ccCCCCcEEEEECcc--cCCHHHHHHHHHHHHh-
Confidence 012222222222211 246788999999996 4666666666665432
Q ss_pred CCCceEEEEc
Q 000916 347 YPHLRLILMS 356 (1225)
Q Consensus 347 ~~~LKlILMS 356 (1225)
..-||||+-
T Consensus 466 -~~~kliLVG 474 (744)
T TIGR02768 466 -AGAKVVLVG 474 (744)
T ss_pred -cCCEEEEEC
Confidence 467888874
No 192
>cd02638 R3H_unknown_1 R3H domain of a group of eukaryotic proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=96.60 E-value=0.0056 Score=53.05 Aligned_cols=54 Identities=33% Similarity=0.517 Sum_probs=46.7
Q ss_pred HHHHHHHhhcCC--CceEEEcCCCCHHHHHHHHHHHHH-cCCeeeccCCCCceEEEEe
Q 000916 32 ISQILDGFLASK--DEVYTFDANLSNRERAVVHEVCKK-MGMTSKSSGRGKQRRVSVC 86 (1225)
Q Consensus 32 ~~~~l~~f~~s~--~~e~~f~~~~~~~eR~~ih~~a~~-lGL~sks~g~g~~r~l~v~ 86 (1225)
+..-|+-|+.+. ...+.|+| |++.||+.||...+. -++.+.|.|.|..|+++|.
T Consensus 4 ~~~~~~~f~~~~~~~r~v~LeP-M~~~ERkIIH~~Lq~~~~v~T~S~G~ep~RrVVI~ 60 (62)
T cd02638 4 VSEELEIFLLSFQRYRVLLFPP-LNSRRRYLIHQTVENRFLLSTFSVGEGWARRTVVC 60 (62)
T ss_pred hHHHHHHHHHhcccCCeEecCC-CChHHHHHHHHHHhcCCCceEEEccCCCCcEEEEe
Confidence 345567788887 57899998 999999999999886 6899999999999999884
No 193
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.55 E-value=0.018 Score=76.39 Aligned_cols=136 Identities=20% Similarity=0.194 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecc
Q 000916 547 LIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTN 626 (1225)
Q Consensus 547 Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATN 626 (1225)
-+.+.|..++.. .+|.+|||+|+++.++.+++.|..... ...+.++. .+ +....+.++.+.+..+...|+++|.
T Consensus 739 ~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~---~~~~~ll~-Qg-~~~~~r~~l~~~F~~~~~~iLlG~~ 812 (928)
T PRK08074 739 EVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEE---LEGYVLLA-QG-VSSGSRARLTKQFQQFDKAILLGTS 812 (928)
T ss_pred HHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhccc---ccCceEEe-cC-CCCCCHHHHHHHHHhcCCeEEEecC
Confidence 344444445433 478999999999999999999875321 11233333 22 2222334444444456778999999
Q ss_pred hhccccCCCC--eEEEEeCCCcccccccCCC----------Ccccccc--cccCHhhHHhhcCccCCCcc--eEEEEe
Q 000916 627 IAETAITIDD--VVYVIDSGRMKEKSYDPYN----------NVSTLQS--SWVSKASAKQRAGRAGRCQA--GICYHL 688 (1225)
Q Consensus 627 IAEtSITI~d--V~~VIDsG~~Ke~~yd~~~----------~~s~L~~--~wiSkasa~QR~GRAGR~~~--G~CyrL 688 (1225)
..--||++++ ...||=.++.-..-=||.. |-+.... .|-.--..+|=.||.=|... |..+-|
T Consensus 813 sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~il 890 (928)
T PRK08074 813 SFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVL 890 (928)
T ss_pred cccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEe
Confidence 9999999997 4778777765432112111 1000100 11122345788888877653 877744
No 194
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=96.55 E-value=0.042 Score=65.27 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=75.6
Q ss_pred ccCcccccHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCC
Q 000916 537 TVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPP 616 (1225)
Q Consensus 537 ~~~~~~id~~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~ 616 (1225)
.+||.+. ....-||. .|.. .+..|+||-...-....-+-+|. .+ .+||.-++.||.+|++.+.-
T Consensus 523 vMNP~KF--raCqfLI~-~HE~-RgDKiIVFsDnvfALk~YAikl~-Kp-----------fIYG~Tsq~ERm~ILqnFq~ 586 (776)
T KOG1123|consen 523 VMNPNKF--RACQFLIK-FHER-RGDKIIVFSDNVFALKEYAIKLG-KP-----------FIYGPTSQNERMKILQNFQT 586 (776)
T ss_pred ecCcchh--HHHHHHHH-HHHh-cCCeEEEEeccHHHHHHHHHHcC-Cc-----------eEECCCchhHHHHHHHhccc
Confidence 4555432 22333343 3333 56789999755544433322221 11 25899999999999887754
Q ss_pred C-CceEEEecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-------eEEEEe
Q 000916 617 G-CRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-------GICYHL 688 (1225)
Q Consensus 617 g-~rKIILATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-------G~CyrL 688 (1225)
+ ...-|.-.-++.|||++|...+.|. ...-.-|+-.-.||-||.=|... -..|.|
T Consensus 587 n~~vNTIFlSKVgDtSiDLPEAnvLIQ-----------------ISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSL 649 (776)
T KOG1123|consen 587 NPKVNTIFLSKVGDTSIDLPEANVLIQ-----------------ISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSL 649 (776)
T ss_pred CCccceEEEeeccCccccCCcccEEEE-----------------EcccccchHHHHHHHHHHHHHhhcCccccceeeeee
Confidence 3 3455666779999999999999994 11123466677799998766432 335556
Q ss_pred cCH
Q 000916 689 YSQ 691 (1225)
Q Consensus 689 ys~ 691 (1225)
.|+
T Consensus 650 VS~ 652 (776)
T KOG1123|consen 650 VSK 652 (776)
T ss_pred eec
Confidence 554
No 195
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.48 E-value=0.021 Score=75.13 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=78.6
Q ss_pred CCCChHHHHHHHHHHHc-CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCC
Q 000916 187 KLPISSFKDVITSTVDS-NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGD 265 (1225)
Q Consensus 187 ~LPi~~~r~eIl~aI~~-~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~ 265 (1225)
.+.....|.+.+..|.. +++++|+|..|+||||.+ ..+.+.+... +.+|+.+-|+-.||..+.+ ..|
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e--------~tG- 411 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAA--GYEVRGAALSGIAAENLEG--------GSG- 411 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEecCcHHHHHHHhh--------ccC-
Confidence 34566677777776665 679999999999999975 4444443332 3578889999887755542 112
Q ss_pred eEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc
Q 000916 266 NIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP 345 (1225)
Q Consensus 266 ~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~ 345 (1225)
. ++ .|--.|+.....+. ..+...++|||||+- .+++..+..+|+.+.
T Consensus 412 ---i----~a----------~TI~sll~~~~~~~-------------~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~- 458 (988)
T PRK13889 412 ---I----AS----------RTIASLEHGWGQGR-------------DLLTSRDVLVIDEAG--MVGTRQLERVLSHAA- 458 (988)
T ss_pred ---c----ch----------hhHHHHHhhhcccc-------------cccccCcEEEEECcc--cCCHHHHHHHHHhhh-
Confidence 1 00 12222222111111 246788999999997 577777777777653
Q ss_pred CCCCceEEEEc
Q 000916 346 SYPHLRLILMS 356 (1225)
Q Consensus 346 ~~~~LKlILMS 356 (1225)
....||||+-
T Consensus 459 -~~garvVLVG 468 (988)
T PRK13889 459 -DAGAKVVLVG 468 (988)
T ss_pred -hCCCEEEEEC
Confidence 3467999874
No 196
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.44 E-value=0.011 Score=75.45 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=85.9
Q ss_pred hhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhC---
Q 000916 184 ERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERG--- 260 (1225)
Q Consensus 184 ~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erg--- 260 (1225)
.|+.|-...+--+++-++.=|+=-|..-.||-|||+....+.+-.++. |.++.|+-+-+ .+|+|=|++++
T Consensus 78 ~~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~-GkgVhVVTvNd------YLA~RDae~m~~vy 150 (939)
T PRK12902 78 SKRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT-GKGVHVVTVND------YLARRDAEWMGQVH 150 (939)
T ss_pred HHHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc-CCCeEEEeCCH------HHHHhHHHHHHHHH
Confidence 456777777888899999888888889999999998765555544432 34455544333 46777777776
Q ss_pred CccCCeEEEEEeecc----cCCCCccEEEEccHHH-----HHHHHhcCcccccccCCCccccccCCccEEEeccccc
Q 000916 261 ENIGDNIGYKIRLES----KGGKHSSIVFCTNGVL-----LRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE 328 (1225)
Q Consensus 261 e~lG~~VGY~IR~es----~~s~~t~I~f~T~GvL-----Lr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE 328 (1225)
+.+|-+||......+ +..=.+.|+|+|++-| ...|..... +....++.+.|||||+-
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~-----------~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDIS-----------EVVQRPFNYCVIDEVDS 216 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhccccc-----------ccccCccceEEEecccc
Confidence 457999997543111 1122578999999866 444432210 12567889999999983
No 197
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.38 E-value=0.0095 Score=70.41 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=31.0
Q ss_pred CeEEEEccCCCchhchHHHHHHHHH-hccCCccEEEEecchHHHHHHHHHHHHHH
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHI-WSKGETCKIVCTQPRRISATSVAERISVE 258 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~-~~~~~~~~IicTQPRRiaAisvAeRVa~E 258 (1225)
+|++|.|..|||||...-..+.+.. ...+. ++++..+.......+.+.++..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~--~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGK--KVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCC--ceEEEEecchHHHHHHHHHhhh
Confidence 6899999999999976655554441 22222 3334444444555555556543
No 198
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.38 E-value=0.016 Score=65.78 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhchHHHH
Q 000916 192 SFKDVITSTVDSNQVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 192 ~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ 224 (1225)
...+.++..+..+..+++.|++|||||+..-.+
T Consensus 9 ~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 9 RVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHH
Confidence 345678889999999999999999999877443
No 199
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.32 E-value=0.043 Score=66.51 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=76.1
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccE
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSI 283 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I 283 (1225)
..+++++|.+|+||||.+-.+.. .+...+..+-++.+-+.|.+|...-..++...+..+ ..... ..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~-~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~--------~~~~~-~~d--- 161 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLAR-YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF--------YGDPD-NKD--- 161 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH-HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE--------EecCC-ccC---
Confidence 45888999999999998766553 333445667788888889988776666665544221 00000 000
Q ss_pred EEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc-CCCCceEEEEccccc
Q 000916 284 VFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP-SYPHLRLILMSATLD 360 (1225)
Q Consensus 284 ~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~-~~~~LKlILMSATld 360 (1225)
...++.+.+. .+..+.+||||.+- |.-..+-++.-|+.+.. ..|+.-+++++||..
T Consensus 162 ---~~~i~~~al~-----------------~~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 162 ---AVEIAKEGLE-----------------KFKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred ---HHHHHHHHHH-----------------HhhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 0122223332 23445899999996 33344456655665543 257888999999984
No 200
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.31 E-value=0.032 Score=63.71 Aligned_cols=130 Identities=16% Similarity=0.258 Sum_probs=77.1
Q ss_pred cCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCcc
Q 000916 203 SNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSS 282 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~ 282 (1225)
..++++++|++|+||||-+-...... ...+..+-++.+-+-|++|..-....+..++. .+- .... ..+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i------~~~-~~~~--~~dp- 139 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGV------DVI-KQKE--GADP- 139 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCe------EEE-eCCC--CCCH-
Confidence 45788899999999999876655332 23455566777788899887666666665542 110 0000 0110
Q ss_pred EEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhC-------cCCCCceEEEE
Q 000916 283 IVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDML-------PSYPHLRLILM 355 (1225)
Q Consensus 283 I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll-------~~~~~LKlILM 355 (1225)
..+..+.+... ...++.+||||=+- |...-.-++..|+.+. ...++..++++
T Consensus 140 -----~~~~~~~l~~~---------------~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl 198 (272)
T TIGR00064 140 -----AAVAFDAIQKA---------------KARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVL 198 (272)
T ss_pred -----HHHHHHHHHHH---------------HHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEE
Confidence 12233333321 24678999999997 4333334444444433 23478899999
Q ss_pred cccccHHHH
Q 000916 356 SATLDADRF 364 (1225)
Q Consensus 356 SATld~~~F 364 (1225)
|||...+.+
T Consensus 199 ~a~~~~~~~ 207 (272)
T TIGR00064 199 DATTGQNAL 207 (272)
T ss_pred ECCCCHHHH
Confidence 999854433
No 201
>PRK08181 transposase; Validated
Probab=96.30 E-value=0.014 Score=66.38 Aligned_cols=53 Identities=15% Similarity=0.318 Sum_probs=32.1
Q ss_pred ccCCccEEEeccccccccc---hhHHHHHHHHhCcCCCCceEEEEcccccHHHHHhhhCC
Q 000916 314 DVSALTHIIVDEIHERDRY---SDFMLAIIRDMLPSYPHLRLILMSATLDADRFSQYFGG 370 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~~---tD~LL~lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~ 370 (1225)
.+.+++.+||||++--..+ .+.|+.++...... +=++++.-+....+...|++
T Consensus 164 ~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~----~s~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 164 KLDKFDLLILDDLAYVTKDQAETSVLFELISARYER----RSILITANQPFGEWNRVFPD 219 (269)
T ss_pred HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC----CCEEEEcCCCHHHHHHhcCC
Confidence 4567889999999854332 23455555543322 23555556677777777753
No 202
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.25 E-value=0.01 Score=58.12 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCchhchHHHHHHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEH 228 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~ 228 (1225)
++.++|.|++||||||.+-..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 5789999999999999886665433
No 203
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.17 E-value=0.0013 Score=69.81 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=55.4
Q ss_pred EEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeeccc-------CCCC
Q 000916 208 LISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESK-------GGKH 280 (1225)
Q Consensus 208 II~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~-------~s~~ 280 (1225)
||+|+=|.|||+.+-..+-... ..+ .++|+||-|+..++.++.+.+.... ...||....... ....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~-~~~-~~~I~vtAP~~~~~~~lf~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI-QKG-KIRILVTAPSPENVQTLFEFAEKGL-----KALGYKEEKKKRIGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS-S------EEEE-SS--S-HHHHHCC-------------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHH-Hhc-CceEEEecCCHHHHHHHHHHHHhhc-----ccccccccccccccccccccccc
Confidence 6899999999998866543222 222 2789999999999888877654332 223443311111 1235
Q ss_pred ccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEccccc
Q 000916 281 SSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLD 360 (1225)
Q Consensus 281 t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATld 360 (1225)
..|.|..+.-++..- ...+++||||+= .+. +-+|+.++..+ ..|+||-|++
T Consensus 74 ~~i~f~~Pd~l~~~~--------------------~~~DlliVDEAA--aIp----~p~L~~ll~~~---~~vv~stTi~ 124 (177)
T PF05127_consen 74 QRIEFVAPDELLAEK--------------------PQADLLIVDEAA--AIP----LPLLKQLLRRF---PRVVFSTTIH 124 (177)
T ss_dssp CC--B--HHHHCCT------------------------SCEEECTGG--GS-----HHHHHHHHCCS---SEEEEEEEBS
T ss_pred ceEEEECCHHHHhCc--------------------CCCCEEEEechh--cCC----HHHHHHHHhhC---CEEEEEeecc
Confidence 578888887664322 134789999995 333 34555665444 4567888884
No 204
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.08 E-value=0.035 Score=64.78 Aligned_cols=51 Identities=24% Similarity=0.415 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchH
Q 000916 194 KDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRR 245 (1225)
Q Consensus 194 r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRR 245 (1225)
.+-+..+++.+..++|+|+|||||||.+ ..|+..........+|++.....
T Consensus 138 ~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~ 188 (319)
T PRK13894 138 REAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTG 188 (319)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCC
Confidence 3445567889999999999999999987 44554432223345777766554
No 205
>PRK10867 signal recognition particle protein; Provisional
Probab=96.08 E-value=0.075 Score=64.36 Aligned_cols=135 Identities=17% Similarity=0.215 Sum_probs=79.6
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccE
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSI 283 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I 283 (1225)
..+++++|.+||||||..-.+........+..+-++.+-++|.+|+.--+..+...|..+ |... ..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v-----~~~~----~~----- 165 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV-----FPSG----DG----- 165 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE-----EecC----CC-----
Confidence 357889999999999988766653322226677889999999999866655655443211 1110 00
Q ss_pred EEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc-CCCCceEEEEcccc--c
Q 000916 284 VFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP-SYPHLRLILMSATL--D 360 (1225)
Q Consensus 284 ~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~-~~~~LKlILMSATl--d 360 (1225)
..+.-+.+..... ....++++||||=+= |...-+-++..|..+.. ..|+--+.+++||. +
T Consensus 166 --~dp~~i~~~a~~~--------------a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~ 228 (433)
T PRK10867 166 --QDPVDIAKAALEE--------------AKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQD 228 (433)
T ss_pred --CCHHHHHHHHHHH--------------HHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHH
Confidence 1122333322211 123578999999986 33333444555544433 24666688899988 4
Q ss_pred HHHHHhhhC
Q 000916 361 ADRFSQYFG 369 (1225)
Q Consensus 361 ~~~Fs~yF~ 369 (1225)
+-..++-|.
T Consensus 229 av~~a~~F~ 237 (433)
T PRK10867 229 AVNTAKAFN 237 (433)
T ss_pred HHHHHHHHH
Confidence 444444444
No 206
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.05 E-value=0.022 Score=67.77 Aligned_cols=56 Identities=20% Similarity=0.383 Sum_probs=39.3
Q ss_pred HHHHHHHHH------HcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHH
Q 000916 193 FKDVITSTV------DSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSV 251 (1225)
Q Consensus 193 ~r~eIl~aI------~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisv 251 (1225)
.|+++++.| .+...+.|.|+-|+|||+.+=.++ +.+ +.....++++-|+.+||..+
T Consensus 5 eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~-~~~--~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 5 EQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAII-DYL--RSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHH-HHh--ccccceEEEecchHHHHHhc
Confidence 344555555 778899999999999996553332 222 22345799999999999776
No 207
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.04 E-value=0.019 Score=62.50 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCe-EEEEccCCCchhchHHHHHHHHH-----hccCCccEEEEecchHHHHHHHHHHHHH
Q 000916 192 SFKDVITSTVDSNQV-VLISGETGCGKTTQVPQFLLEHI-----WSKGETCKIVCTQPRRISATSVAERISV 257 (1225)
Q Consensus 192 ~~r~eIl~aI~~~~V-vII~GeTGsGKTTQvPq~ILe~~-----~~~~~~~~IicTQPRRiaAisvAeRVa~ 257 (1225)
..|.+.+..+.++.. ++|.|+.||||||.+...+.... .......+|+++-|+..|+-.+.+++.+
T Consensus 4 ~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 4 ESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 345566666666665 99999999999998887776652 1233456899999999999999999876
No 208
>PRK04296 thymidine kinase; Provisional
Probab=96.00 E-value=0.044 Score=59.12 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=27.5
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecc
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQP 243 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQP 243 (1225)
+.+++|+|++|+||||.+-+++..... .+. ++++.-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~--~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGM--KVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCC--eEEEEec
Confidence 467899999999999999999876643 233 4555444
No 209
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.99 E-value=0.32 Score=63.56 Aligned_cols=114 Identities=18% Similarity=0.290 Sum_probs=84.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCC--CceEEEecchhccccCCCCeE
Q 000916 561 DGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPG--CRKIILSTNIAETAITIDDVV 638 (1225)
Q Consensus 561 ~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g--~rKIILATNIAEtSITI~dV~ 638 (1225)
...||||+.=..-+.-+-+-|.+.. .+.+..+-|-|++++.+|.++.++|..+ .--.+|.|-+.--|+.+-+.+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~----mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGAD 1415 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKY----MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGAD 1415 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhh----cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCc
Confidence 4579999987766666655555432 3346778999999999999999888776 345678999999999999998
Q ss_pred EEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHHH
Q 000916 639 YVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLR 693 (1225)
Q Consensus 639 ~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~ 693 (1225)
-|| .-|--|||-+. -.|+-|+-|-|-.+-=-.|||.++..
T Consensus 1416 TVV----FvEHDWNPMrD-----------LQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1416 TVV----FVEHDWNPMRD-----------LQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred eEE----EEecCCCchhh-----------HHHHHHHHhhcCceeeeeeeehhccc
Confidence 888 22334555444 24566888888777777999999754
No 210
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.92 E-value=0.063 Score=64.96 Aligned_cols=134 Identities=19% Similarity=0.260 Sum_probs=80.0
Q ss_pred CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccEE
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIV 284 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I~ 284 (1225)
.+++++|.+|+||||..-.+........+..+-++.+-++|.+|+...++.+...+..+ |... . ..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~-----~~~~---~-~~----- 165 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV-----FALG---K-GQ----- 165 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCce-----EecC---C-CC-----
Confidence 47889999999999998777665322346678889999999998876666665443221 1100 0 00
Q ss_pred EEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcC-CCCceEEEEcccc--cH
Q 000916 285 FCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPS-YPHLRLILMSATL--DA 361 (1225)
Q Consensus 285 f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~-~~~LKlILMSATl--d~ 361 (1225)
.+--+.+..... ....++++||||=+- |...-+-++..|+.+... .|+--+++++||. ++
T Consensus 166 --~P~~i~~~al~~--------------~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~ 228 (428)
T TIGR00959 166 --SPVEIARRALEY--------------AKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDA 228 (428)
T ss_pred --CHHHHHHHHHHH--------------HHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHH
Confidence 111122221111 023578999999997 443444466666555432 4666778888887 33
Q ss_pred HHHHhhhC
Q 000916 362 DRFSQYFG 369 (1225)
Q Consensus 362 ~~Fs~yF~ 369 (1225)
-..++-|.
T Consensus 229 ~~~a~~f~ 236 (428)
T TIGR00959 229 VNTAKTFN 236 (428)
T ss_pred HHHHHHHH
Confidence 33344443
No 211
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.92 E-value=0.17 Score=63.51 Aligned_cols=149 Identities=18% Similarity=0.166 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHh---CC-----ccCCe
Q 000916 195 DVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVER---GE-----NIGDN 266 (1225)
Q Consensus 195 ~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Er---ge-----~lG~~ 266 (1225)
+++++.. +.+..|+..+=|+|||+.+-.++.-.+... ..+|++|-|+.-.|.++-+|+..-+ +. ..|..
T Consensus 179 d~~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~i 255 (752)
T PHA03333 179 DRIFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKI 255 (752)
T ss_pred HHHHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceE
Confidence 3344433 456677889999999999977766333212 3689999999999988888865443 21 11211
Q ss_pred EE-----EEEeecccCCCC---ccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHH
Q 000916 267 IG-----YKIRLESKGGKH---SSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLA 338 (1225)
Q Consensus 267 VG-----Y~IR~es~~s~~---t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~ 338 (1225)
+. -.|++....... ++|.|++.+ .+.. .-.+++.|||||++. +..+++..
T Consensus 256 v~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~-------------RG~~~DLLIVDEAAf--I~~~~l~a 313 (752)
T PHA03333 256 VTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAA-------------RGQNPDLVIVDEAAF--VNPGALLS 313 (752)
T ss_pred EEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCc-------------CCCCCCEEEEECccc--CCHHHHHH
Confidence 21 113333322222 678888765 1211 112568999999986 44477777
Q ss_pred HHHHhCcCCCCceEEEEcccccHHHHHhhhCC
Q 000916 339 IIRDMLPSYPHLRLILMSATLDADRFSQYFGG 370 (1225)
Q Consensus 339 lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~ 370 (1225)
++--+.. .+-|+|++|-+.+.+.|..+.++
T Consensus 314 IlP~l~~--~~~k~IiISS~~~~~s~tS~L~n 343 (752)
T PHA03333 314 VLPLMAV--KGTKQIHISSPVDADSWISRVGE 343 (752)
T ss_pred HHHHHcc--CCCceEEEeCCCCcchHHHHhhh
Confidence 6665544 36899999999999999887764
No 212
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.88 E-value=0.078 Score=63.95 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=74.7
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccE
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSI 283 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I 283 (1225)
..|++++|.+||||||.+-..... +..+|..+-++++-|-|.+|+..-+..+...+.. + |.+..+.. +
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~-l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp----~-~~~~~~~d--p---- 167 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYY-YQRKGFKPCLVCADTFRAGAFDQLKQNATKARIP----F-YGSYTESD--P---- 167 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHCCCCEEEEcCcccchhHHHHHHHHhhccCCe----E-EeecCCCC--H----
Confidence 358889999999999987766542 2234556778889999988876654444332211 1 11110000 0
Q ss_pred EEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc-CCCCceEEEEcccc
Q 000916 284 VFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP-SYPHLRLILMSATL 359 (1225)
Q Consensus 284 ~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~-~~~~LKlILMSATl 359 (1225)
..+..+.+..- .-.++++||||=+- |.-.-+-++..|+.+.. ..|+..+++++||.
T Consensus 168 ----~~i~~~~l~~~---------------~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~ 224 (429)
T TIGR01425 168 ----VKIASEGVEKF---------------KKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI 224 (429)
T ss_pred ----HHHHHHHHHHH---------------HhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEecccc
Confidence 01222222211 11478999999997 44443446666666544 35788889999998
No 213
>PRK08116 hypothetical protein; Validated
Probab=95.87 E-value=0.054 Score=61.70 Aligned_cols=51 Identities=14% Similarity=0.311 Sum_probs=28.8
Q ss_pred ccCCccEEEeccccccccchhHHHHHHHHhCcCC--CCceEEEEcccccHHHHHh
Q 000916 314 DVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSY--PHLRLILMSATLDADRFSQ 366 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~--~~LKlILMSATld~~~Fs~ 366 (1225)
.+.++++|||||++- ...+|+....|-.++..+ ....+|+.| .+..+.+.+
T Consensus 175 ~l~~~dlLviDDlg~-e~~t~~~~~~l~~iin~r~~~~~~~IiTs-N~~~~eL~~ 227 (268)
T PRK08116 175 SLVNADLLILDDLGA-ERDTEWAREKVYNIIDSRYRKGLPTIVTT-NLSLEELKN 227 (268)
T ss_pred HhcCCCEEEEecccC-CCCCHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHHHH
Confidence 466788999999973 223555554444454432 334455554 454544444
No 214
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.82 E-value=0.1 Score=54.94 Aligned_cols=124 Identities=18% Similarity=0.231 Sum_probs=68.4
Q ss_pred eEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccEEE
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVF 285 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I~f 285 (1225)
+++++|++||||||..-.+... +...+..+-++.+-++|..+...-.+.+.+.+ ..+.... .+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~-~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~--------~~~~~~~--~~------ 64 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY-LKKKGKKVLLVAADTYRPAAIEQLRVLGEQVG--------VPVFEEG--EG------ 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHCCCcEEEEEcCCCChHHHHHHHHhcccCC--------eEEEecC--CC------
Confidence 6789999999999987555443 32334455566677888776544444433322 1111110 00
Q ss_pred EccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcC-CCCceEEEEcccccH
Q 000916 286 CTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPS-YPHLRLILMSATLDA 361 (1225)
Q Consensus 286 ~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~-~~~LKlILMSATld~ 361 (1225)
..+.-++...... ..-.++.+||||...-...+.+. +..++.+... .++--+++++|+...
T Consensus 65 ~~~~~~~~~~~~~--------------~~~~~~d~viiDt~g~~~~~~~~-l~~l~~l~~~~~~~~~~lVv~~~~~~ 126 (173)
T cd03115 65 KDPVSIAKRAIEH--------------AREENFDVVIVDTAGRLQIDENL-MEELKKIKRVVKPDEVLLVVDAMTGQ 126 (173)
T ss_pred CCHHHHHHHHHHH--------------HHhCCCCEEEEECcccchhhHHH-HHHHHHHHhhcCCCeEEEEEECCCCh
Confidence 0122222222111 02247789999999855443344 4444555442 477788888887643
No 215
>PRK10536 hypothetical protein; Provisional
Probab=95.82 E-value=0.018 Score=64.59 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=48.0
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchH
Q 000916 187 KLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRR 245 (1225)
Q Consensus 187 ~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRR 245 (1225)
--|....+...+.+|.++++|++.|++|||||+..-.+.++.+.. +.--+|+++-|.-
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v 114 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVL 114 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCC
Confidence 357778888899999999999999999999999988888876644 3355799998863
No 216
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.78 E-value=0.028 Score=59.48 Aligned_cols=115 Identities=25% Similarity=0.276 Sum_probs=63.4
Q ss_pred EEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeec-cc-------CC
Q 000916 207 VLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLE-SK-------GG 278 (1225)
Q Consensus 207 vII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~e-s~-------~s 278 (1225)
++|+|+.|+||||.+-. +++.+-..+-.+.=++|++.| .-|..+||.+..- +. ..
T Consensus 2 i~iTG~pG~GKTTll~k-~i~~l~~~~~~v~Gf~t~evr----------------~~g~r~GF~iv~l~~g~~~~la~~~ 64 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKK-VIEELKKKGLPVGGFYTEEVR----------------ENGRRIGFDIVDLNSGEEAILARVD 64 (168)
T ss_dssp EEEES-TTSSHHHHHHH-HHHHHHHTCGGEEEEEEEEEE----------------TTSSEEEEEEEET-TS-EEEEEETT
T ss_pred EEEECcCCCCHHHHHHH-HHHHhhccCCccceEEeeccc----------------CCCceEEEEEEECcCCCcccccccc
Confidence 68999999999999944 556654444344556776644 2367889887532 11 01
Q ss_pred CCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcC
Q 000916 279 KHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPS 346 (1225)
Q Consensus 279 ~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~ 346 (1225)
......+...++.++.+..-.. ..++..+.+-+.|||||+=-.-+.+.-....+..++..
T Consensus 65 ~~~~~~vgky~v~~e~fe~~~~--------~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s 124 (168)
T PF03266_consen 65 FRSGPRVGKYFVDLESFEEIGL--------PALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDS 124 (168)
T ss_dssp SS-SCECTTCEE-HHHHHCCCC--------CCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCT
T ss_pred ccccccCCCEEEcHHHHHHHHH--------HHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcC
Confidence 1112222233344444432211 11222345678999999998888887777788888773
No 217
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.74 E-value=0.083 Score=63.20 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=17.9
Q ss_pred CCeEEEEccCCCchhchHHHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~I 225 (1225)
...++|+|++|+||||.+=.++
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999875544
No 218
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.74 E-value=0.071 Score=62.48 Aligned_cols=54 Identities=9% Similarity=0.285 Sum_probs=31.2
Q ss_pred ccCCccEEEeccccccccchhHHHHHHHHhCcCCC-CceEEEEcccccHHHHHhhh
Q 000916 314 DVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYP-HLRLILMSATLDADRFSQYF 368 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~-~LKlILMSATld~~~Fs~yF 368 (1225)
.+.+++.+|||+++- ...+++-...|-.++..+- .-+-+++|..+..+.+.+.|
T Consensus 243 ~l~~~DLLIIDDlG~-e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~ 297 (329)
T PRK06835 243 LLINCDLLIIDDLGT-EKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY 297 (329)
T ss_pred HhccCCEEEEeccCC-CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 567889999999983 3445554444444444331 11335566666655554444
No 219
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.69 E-value=0.043 Score=66.02 Aligned_cols=120 Identities=19% Similarity=0.220 Sum_probs=98.6
Q ss_pred HHHHHHHHHh-cCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecc
Q 000916 548 IEQLLRKICM-DSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTN 626 (1225)
Q Consensus 548 i~~ll~~I~~-~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATN 626 (1225)
|.+|+..|.. -..+..+||-.-+..-.+.|.+.|...+ +.+-.|||.+.+-+|..|...-+.|..-|+|--|
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~g-------ikv~YlHSdidTlER~eIirdLR~G~~DvLVGIN 504 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELG-------IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN 504 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcC-------ceEEeeeccchHHHHHHHHHHHhcCCccEEEeeh
Confidence 5566666654 2345789999999999999999998765 7899999999999999999999999999999999
Q ss_pred hhccccCCCCeEEEE--eCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEec
Q 000916 627 IAETAITIDDVVYVI--DSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLY 689 (1225)
Q Consensus 627 IAEtSITI~dV~~VI--DsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLy 689 (1225)
..--||+||.|..|. |..+ +-. .=|-.|..|=.|||.|.-.|..+-..
T Consensus 505 LLREGLDiPEVsLVAIlDADK--eGF-------------LRse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 505 LLREGLDLPEVSLVAILDADK--EGF-------------LRSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred hhhccCCCcceeEEEEeecCc--ccc-------------ccccchHHHHHHHHhhccCCeEEEEc
Confidence 999999999999887 4333 221 23556888999999999999886443
No 220
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=95.69 E-value=0.016 Score=68.34 Aligned_cols=78 Identities=28% Similarity=0.384 Sum_probs=67.3
Q ss_pred hhHHHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccccCchhHHHHHH
Q 000916 436 DEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIK 515 (1225)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~ 515 (1225)
+..+.++.+++-... .||-|.++|.|||||+|.-|....+++|+-.|||+...|.+|+|.+++|...++.++++-|-
T Consensus 144 ~nlet~LRll~lGA~---~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~ 220 (669)
T KOG0818|consen 144 GNLETCLRLLSLGAQ---ANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLV 220 (669)
T ss_pred ccHHHHHHHHHcccc---cCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHH
Confidence 445666776654433 58999999999999999999999999999999999999999999999999999999887664
Q ss_pred H
Q 000916 516 K 516 (1225)
Q Consensus 516 ~ 516 (1225)
+
T Consensus 221 e 221 (669)
T KOG0818|consen 221 E 221 (669)
T ss_pred H
Confidence 3
No 221
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.68 E-value=0.059 Score=63.74 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=19.0
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
...++|+|++|+|||+.+ +.+++..
T Consensus 40 ~~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 357899999999999876 4555443
No 222
>PHA02244 ATPase-like protein
Probab=95.68 E-value=0.035 Score=65.35 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhchHHHH
Q 000916 195 DVITSTVDSNQVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 195 ~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ 224 (1225)
..+..++..+..|+|.|+||||||+.+=.+
T Consensus 110 ~ri~r~l~~~~PVLL~GppGtGKTtLA~aL 139 (383)
T PHA02244 110 ADIAKIVNANIPVFLKGGAGSGKNHIAEQI 139 (383)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHHHH
Confidence 357778888999999999999999876443
No 223
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.67 E-value=0.022 Score=65.21 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhcc-CCccEEEEecchHHHHHHHHHHHHHHhCC
Q 000916 192 SFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSK-GETCKIVCTQPRRISATSVAERISVERGE 261 (1225)
Q Consensus 192 ~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~-~~~~~IicTQPRRiaAisvAeRVa~Erge 261 (1225)
..|.+++.. .+..++|.|..||||||.+-.-+...+... ..+-+|+|+-+++-||..+.+|+....++
T Consensus 3 ~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 3 DEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 345666666 577788889999999998877665554433 35568999999999999999999876543
No 224
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.55 E-value=0.065 Score=58.77 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=19.2
Q ss_pred HcCCeEEEEccCCCchhchHHHHH
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~I 225 (1225)
..+..++|.|++||||||..=.+.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHH
Confidence 356789999999999998775443
No 225
>PRK09183 transposase/IS protein; Provisional
Probab=95.43 E-value=0.17 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=22.1
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLE 227 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe 227 (1225)
+..+..++|.|++|||||+..-.+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 677889999999999999877665444
No 226
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.42 E-value=0.069 Score=60.21 Aligned_cols=26 Identities=38% Similarity=0.672 Sum_probs=20.0
Q ss_pred HHc-CCeEEEEccCCCchhchHHHHHH
Q 000916 201 VDS-NQVVLISGETGCGKTTQVPQFLL 226 (1225)
Q Consensus 201 I~~-~~VvII~GeTGsGKTTQvPq~IL 226 (1225)
+.. ...++|+|++||||||.+=.+.-
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 444 44889999999999998866543
No 227
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.063 Score=65.44 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=27.6
Q ss_pred cCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccccH
Q 000916 315 VSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLDA 361 (1225)
Q Consensus 315 L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATld~ 361 (1225)
-..+.++||||||. +..+..-.+||.+ . .|...++++=||-+.
T Consensus 119 ~g~~KV~IIDEah~--Ls~~A~NALLKtL-E-EPp~~viFILaTte~ 161 (484)
T PRK14956 119 GGKYKVYIIDEVHM--LTDQSFNALLKTL-E-EPPAHIVFILATTEF 161 (484)
T ss_pred cCCCEEEEEechhh--cCHHHHHHHHHHh-h-cCCCceEEEeecCCh
Confidence 35788999999994 5566666666665 2 244455555566443
No 228
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.083 Score=67.10 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=21.3
Q ss_pred HHHHHHHcC---CeEEEEccCCCchhchHHHHH
Q 000916 196 VITSTVDSN---QVVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 196 eIl~aI~~~---~VvII~GeTGsGKTTQvPq~I 225 (1225)
.+.++|.++ ..++++|+.|+||||..=.|.
T Consensus 27 ~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLA 59 (830)
T PRK07003 27 ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFA 59 (830)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 344455554 467899999999999775443
No 229
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.28 E-value=0.16 Score=67.62 Aligned_cols=122 Identities=20% Similarity=0.195 Sum_probs=79.0
Q ss_pred CCChHHHHHHHHHH-HcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCe
Q 000916 188 LPISSFKDVITSTV-DSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDN 266 (1225)
Q Consensus 188 LPi~~~r~eIl~aI-~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~ 266 (1225)
......|.+.+..+ ..+++++|+|.-|+||||.+=. +.+.+... +.+|+..-|+-.||..+.+ +.|..
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~~--G~~V~g~ApTgkAA~~L~e----~~Gi~---- 448 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEAA--GYRVVGGALAGKAAEGLEK----EAGIQ---- 448 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHHc--CCeEEEEcCcHHHHHHHHH----hhCCC----
Confidence 45677777777776 4689999999999999998754 33433222 3578888998777755532 22211
Q ss_pred EEEEEeecccCCCCccEEEEccHHH-HHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCc
Q 000916 267 IGYKIRLESKGGKHSSIVFCTNGVL-LRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLP 345 (1225)
Q Consensus 267 VGY~IR~es~~s~~t~I~f~T~GvL-Lr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~ 345 (1225)
-.|--.+ ++. ..+. ..|..-++|||||+. .+++..+..+|+.+.
T Consensus 449 ------------------a~TIas~ll~~-~~~~-------------~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~- 493 (1102)
T PRK13826 449 ------------------SRTLSSWELRW-NQGR-------------DQLDNKTVFVLDEAG--MVASRQMALFVEAVT- 493 (1102)
T ss_pred ------------------eeeHHHHHhhh-ccCc-------------cCCCCCcEEEEECcc--cCCHHHHHHHHHHHH-
Confidence 0111112 221 1110 256778899999998 678888888887763
Q ss_pred CCCCceEEEEc
Q 000916 346 SYPHLRLILMS 356 (1225)
Q Consensus 346 ~~~~LKlILMS 356 (1225)
....||||+-
T Consensus 494 -~~garvVLVG 503 (1102)
T PRK13826 494 -RAGAKLVLVG 503 (1102)
T ss_pred -hcCCEEEEEC
Confidence 2467999875
No 230
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.25 E-value=0.038 Score=62.78 Aligned_cols=70 Identities=23% Similarity=0.138 Sum_probs=46.1
Q ss_pred HHHHHHHHHc----CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCcc
Q 000916 194 KDVITSTVDS----NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 194 r~eIl~aI~~----~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
-++|.+.+.. .++|.|.|..|+||||..-++.-+......-.+.+.+.-.+......+.+.++..++...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence 4556666665 688999999999999999887755333332334455555444444667777877776553
No 231
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.18 E-value=0.099 Score=59.18 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.2
Q ss_pred CCeEEEEccCCCchhchH
Q 000916 204 NQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQv 221 (1225)
...+++.|++||||||..
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 356889999999999865
No 232
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.13 E-value=0.098 Score=58.75 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=39.4
Q ss_pred ccCCccEEEeccccccccchhHHHHHHHHhCcCC-CCceEEEEcccccHHHHHhhhCC
Q 000916 314 DVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSY-PHLRLILMSATLDADRFSQYFGG 370 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~-~~LKlILMSATld~~~Fs~yF~~ 370 (1225)
.+.++++|||||++.-. .+|+-..+|-.++..| .+.+-++++--++.+.+.++|++
T Consensus 159 ~l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 159 DLSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred HhccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 35678999999999644 6777666666666544 33455666667788888888764
No 233
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.09 E-value=0.025 Score=64.14 Aligned_cols=46 Identities=37% Similarity=0.467 Sum_probs=32.6
Q ss_pred HHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchH
Q 000916 197 ITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRR 245 (1225)
Q Consensus 197 Il~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRR 245 (1225)
+..+++.+..++|+|+|||||||++-.+ ++..-.. ..+|++.+-..
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~al-l~~i~~~--~~~iv~iEd~~ 165 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNAL-LEEIPPE--DERIVTIEDPP 165 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHHH-HHHCHTT--TSEEEEEESSS
T ss_pred HhhccccceEEEEECCCccccchHHHHH-hhhcccc--ccceEEecccc
Confidence 3445677899999999999999999544 5544322 35788777543
No 234
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.08 E-value=0.15 Score=65.85 Aligned_cols=93 Identities=13% Similarity=0.191 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhc-CCCCCCceEEEec
Q 000916 547 LIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFK-RPPPGCRKIILST 625 (1225)
Q Consensus 547 Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~-~~p~g~rKIILAT 625 (1225)
-+.+.|..++. . +|.+|||+|++..++.+.+.|.... .+.|+ .++..+...-.+-|. .+..|...|+++|
T Consensus 522 ~~~~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~------~~~ll-~Q~~~~~~~ll~~f~~~~~~~~~~VL~g~ 592 (697)
T PRK11747 522 EMAEFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDL------RLMLL-VQGDQPRQRLLEKHKKRVDEGEGSVLFGL 592 (697)
T ss_pred HHHHHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhc------CCcEE-EeCCchHHHHHHHHHHHhccCCCeEEEEe
Confidence 45555556665 3 4458999999999999998886421 12222 355443333222232 3345667799999
Q ss_pred chhccccCCCC--eEEEEeCCCccc
Q 000916 626 NIAETAITIDD--VVYVIDSGRMKE 648 (1225)
Q Consensus 626 NIAEtSITI~d--V~~VIDsG~~Ke 648 (1225)
.-.-.||++|+ ...||=.|+.-.
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPFA 617 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCCC
Confidence 98899999976 788887776543
No 235
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.07 E-value=0.054 Score=57.42 Aligned_cols=38 Identities=37% Similarity=0.501 Sum_probs=30.0
Q ss_pred eEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecch
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPR 244 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPR 244 (1225)
+++|.|++|||||+..-||+.+.+ ..|..|-.+.+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEECCCC
Confidence 478999999999999999999876 44566666666544
No 236
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=94.95 E-value=0.057 Score=68.70 Aligned_cols=65 Identities=23% Similarity=0.422 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHH-cCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHH
Q 000916 191 SSFKDVITSTVD-SNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVE 258 (1225)
Q Consensus 191 ~~~r~eIl~aI~-~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~E 258 (1225)
...|.+.+..+. ...+++|.|++|+||||.+-..+.... ..+ .+|+|+-|+..|+-.+.+|+...
T Consensus 159 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~~g--~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 159 NESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-KRG--LRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-HcC--CCEEEEcCcHHHHHHHHHHHHhC
Confidence 455555555544 448999999999999998887776544 233 38999999999999999999653
No 237
>PRK06893 DNA replication initiation factor; Validated
Probab=94.95 E-value=0.094 Score=58.28 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=29.3
Q ss_pred ccCCccEEEeccccccccch---hHHHHHHHHhCcCCCCceEEEEcccccHHH
Q 000916 314 DVSALTHIIVDEIHERDRYS---DFMLAIIRDMLPSYPHLRLILMSATLDADR 363 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~~t---D~LL~lLk~ll~~~~~LKlILMSATld~~~ 363 (1225)
.+.+++.|||||+|.-..+. ..|+.++..+... .-.+|+++++..+..
T Consensus 88 ~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--~~~illits~~~p~~ 138 (229)
T PRK06893 88 NLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--GKTLLLISADCSPHA 138 (229)
T ss_pred hcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--CCcEEEEeCCCChHH
Confidence 35677899999999643222 2455555554322 235678888875543
No 238
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.92 E-value=0.049 Score=59.26 Aligned_cols=31 Identities=29% Similarity=0.548 Sum_probs=23.4
Q ss_pred HHHHHHHc--CCeEEEEccCCCchhchHHHHHH
Q 000916 196 VITSTVDS--NQVVLISGETGCGKTTQVPQFLL 226 (1225)
Q Consensus 196 eIl~aI~~--~~VvII~GeTGsGKTTQvPq~IL 226 (1225)
+|.+.+.+ ++.++|.|+-|+|||+.+=.++-
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~ 42 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLKEFIN 42 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHH
Confidence 45555555 58999999999999997655544
No 239
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.92 E-value=0.047 Score=63.64 Aligned_cols=51 Identities=31% Similarity=0.414 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHH
Q 000916 195 DVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRI 246 (1225)
Q Consensus 195 ~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRi 246 (1225)
+-+..++.....++|+|+|||||||.+ -.|++.........+|++.+-...
T Consensus 135 ~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~E 185 (323)
T PRK13833 135 SVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAE 185 (323)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCcc
Confidence 456677888899999999999999988 445555432233458888775544
No 240
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.91 E-value=0.23 Score=57.84 Aligned_cols=31 Identities=32% Similarity=0.552 Sum_probs=22.3
Q ss_pred HHHHHHHHcCC--eEEEEccCCCchhchHHHHH
Q 000916 195 DVITSTVDSNQ--VVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 195 ~eIl~aI~~~~--VvII~GeTGsGKTTQvPq~I 225 (1225)
+.+..++.++. .+++.|++||||||.+=.+.
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~ 57 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALA 57 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHH
Confidence 33444555555 78999999999999875544
No 241
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=94.90 E-value=6.8 Score=47.48 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=72.4
Q ss_pred cCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCC--CCCceEEEecchhccccCCC
Q 000916 558 DSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPP--PGCRKIILSTNIAETAITID 635 (1225)
Q Consensus 558 ~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p--~g~rKIILATNIAEtSITI~ 635 (1225)
+..+-..|||.--..-.+.+...+.... +..+-+-|+.++.+|...-+.|. ...+--||+--.|-+|+|+-
T Consensus 489 d~~~~KflVFaHH~~vLd~Iq~~~~~r~-------vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~t 561 (689)
T KOG1000|consen 489 DAPPRKFLVFAHHQIVLDTIQVEVNKRK-------VGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLT 561 (689)
T ss_pred cCCCceEEEEehhHHHHHHHHHHHHHcC-------CCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeee
Confidence 4567789999887766666666665442 55667889999888877755543 44566789999999999999
Q ss_pred CeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEE
Q 000916 636 DVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICY 686 (1225)
Q Consensus 636 dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~Cy 686 (1225)
.-..||=.-+ .|+|.- |. .|.-|+-|.|-+.. ++.|
T Consensus 562 Aa~~VVFaEL----~wnPgv----Ll-------QAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 562 AASVVVFAEL----HWNPGV----LL-------QAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred ccceEEEEEe----cCCCce----EE-------echhhhhhccccceeeEEE
Confidence 9999984333 444432 11 34456666666555 4433
No 242
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.78 E-value=0.21 Score=50.88 Aligned_cols=25 Identities=40% Similarity=0.500 Sum_probs=20.9
Q ss_pred eEEEEccCCCchhchHHHHHHHHHh
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIW 230 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~ 230 (1225)
+++|.|++||||||.+-+++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999998888776644
No 243
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.78 E-value=0.06 Score=62.32 Aligned_cols=52 Identities=33% Similarity=0.447 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHH
Q 000916 194 KDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRI 246 (1225)
Q Consensus 194 r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRi 246 (1225)
.+.+..+++.+..++|+|+|||||||.+-. |++..-......+|++.+-.+.
T Consensus 122 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~a-l~~~i~~~~~~~ri~tiEd~~E 173 (299)
T TIGR02782 122 RDVLREAVLARKNILVVGGTGSGKTTLANA-LLAEIAKNDPTDRVVIIEDTRE 173 (299)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHhhccCCCceEEEECCchh
Confidence 345666788899999999999999998844 4444322223468888776655
No 244
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.73 E-value=0.15 Score=56.31 Aligned_cols=22 Identities=18% Similarity=0.520 Sum_probs=17.9
Q ss_pred cCCeEEEEccCCCchhchHHHH
Q 000916 203 SNQVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ 224 (1225)
.+..++|.|++|||||+..=.+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai 62 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQAL 62 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 5678999999999999876443
No 245
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.73 E-value=0.071 Score=52.75 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=24.9
Q ss_pred ccEEEeccccccccch------------hHHHHHHHHhCcCCCCceEEEEcccc
Q 000916 318 LTHIIVDEIHERDRYS------------DFMLAIIRDMLPSYPHLRLILMSATL 359 (1225)
Q Consensus 318 ~shVIvDEvHER~~~t------------D~LL~lLk~ll~~~~~LKlILMSATl 359 (1225)
-.+|+|||+|.-.... +.|+..+.........+-+|+.|-++
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 5899999999755443 33444444433333346666666664
No 246
>PRK09087 hypothetical protein; Validated
Probab=94.62 E-value=0.16 Score=56.39 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=33.1
Q ss_pred cEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccccHHH-------HHhhhCCCCeEecC
Q 000916 319 THIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLDADR-------FSQYFGGCPVIQVP 377 (1225)
Q Consensus 319 shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATld~~~-------Fs~yF~~~pvi~I~ 377 (1225)
..|+||++|--..+-+.|+.++..+.... +.|+++++..... +..-|..+.++.++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g---~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~ 151 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAG---TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIG 151 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCC---CeEEEECCCChHHhccccccHHHHHhCCceeecC
Confidence 47999999975545566676766655432 5567777654333 33344445555544
No 247
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.16 Score=63.74 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=26.4
Q ss_pred ccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEc
Q 000916 314 DVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMS 356 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMS 356 (1225)
...++.++||||||.- +....-.+||.+-.-.++.++||.+
T Consensus 121 ~~gr~KViIIDEah~L--s~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 121 TAGRFKVYMIDEVHML--TNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred hcCCceEEEEEChHhc--CHHHHHHHHHhhccCCCCceEEEEe
Confidence 4567899999999953 4455566677543323456666653
No 248
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.40 E-value=0.2 Score=52.72 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=14.5
Q ss_pred HcCCeEEEEccCCCchhchHHHHH
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~I 225 (1225)
.+.++++|.|+.|||||+.+=.++
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999876643
No 249
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.38 E-value=0.11 Score=57.82 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=36.6
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVA 252 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvA 252 (1225)
+..+.+++|.|++||||||..-|++.+.. .++..+-.++++-+....+..+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHH
Confidence 56788999999999999999999988754 3455565566665554444333
No 250
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.34 E-value=0.048 Score=58.31 Aligned_cols=53 Identities=13% Similarity=0.319 Sum_probs=26.8
Q ss_pred ccCCccEEEecccccccc---chhHHHHHHHHhCcCCCCceEEEEcccccHHHHHhhhCC
Q 000916 314 DVSALTHIIVDEIHERDR---YSDFMLAIIRDMLPSYPHLRLILMSATLDADRFSQYFGG 370 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~---~tD~LL~lLk~ll~~~~~LKlILMSATld~~~Fs~yF~~ 370 (1225)
.|.++.++||||+=--.. ..+.|..++..... +..+|+. -=++.+.+.++|++
T Consensus 105 ~l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~---~~~tIiT-SN~~~~~l~~~~~d 160 (178)
T PF01695_consen 105 RLKRVDLLILDDLGYEPLSEWEAELLFEIIDERYE---RKPTIIT-SNLSPSELEEVLGD 160 (178)
T ss_dssp HHHTSSCEEEETCTSS---HHHHHCTHHHHHHHHH---T-EEEEE-ESS-HHHHHT----
T ss_pred ccccccEecccccceeeecccccccchhhhhHhhc---ccCeEee-CCCchhhHhhcccc
Confidence 466789999999963222 22333444433222 2245554 44688889998875
No 251
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.29 E-value=0.16 Score=64.79 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=80.9
Q ss_pred ccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecc---------cCCCCc
Q 000916 211 GETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLES---------KGGKHS 281 (1225)
Q Consensus 211 GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es---------~~s~~t 281 (1225)
+-+|||||..+-+.+-+... .| ..+++.-|---.+-++.+|+...+|. +..+.|+=.+.. ...-..
T Consensus 167 ~~~GSGKTevyl~~i~~~l~-~G--k~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLR-AG--RGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHH-cC--CeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 33699999888777755543 33 36899999988888999998766651 112223221111 112345
Q ss_pred cEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccc------cchhHH-HHHHHHhCcCCCCceEEE
Q 000916 282 SIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERD------RYSDFM-LAIIRDMLPSYPHLRLIL 354 (1225)
Q Consensus 282 ~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~------~~tD~L-L~lLk~ll~~~~~LKlIL 354 (1225)
+|++.|-.-+. .-+.+...|||||=|+-+ ..-+.- ++++|- +.-+..+||
T Consensus 242 ~IViGtRSAvF--------------------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra---~~~~~~lvL 298 (665)
T PRK14873 242 RVVVGTRSAVF--------------------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRA---HQHGCALLI 298 (665)
T ss_pred cEEEEcceeEE--------------------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHH---HHcCCcEEE
Confidence 78888854332 247889999999999732 322221 222222 235789999
Q ss_pred EcccccHHHHHh
Q 000916 355 MSATLDADRFSQ 366 (1225)
Q Consensus 355 MSATld~~~Fs~ 366 (1225)
.|||...+.|.+
T Consensus 299 gSaTPSles~~~ 310 (665)
T PRK14873 299 GGHARTAEAQAL 310 (665)
T ss_pred ECCCCCHHHHHH
Confidence 999999988865
No 252
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.27 E-value=0.099 Score=63.39 Aligned_cols=108 Identities=25% Similarity=0.338 Sum_probs=60.8
Q ss_pred CCChHHH-HHHHHHHHc-CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCC
Q 000916 188 LPISSFK-DVITSTVDS-NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGD 265 (1225)
Q Consensus 188 LPi~~~r-~eIl~aI~~-~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~ 265 (1225)
|..+... +.+..++.. +-.++|+|+|||||||-+-.+|-+.... ..+ |||- -+
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~---~~n-I~Ti---------------------ED 294 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTP---ERN-IITI---------------------ED 294 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCC---Cce-EEEe---------------------eC
Confidence 4433333 345555554 4577899999999999887776554321 223 3331 13
Q ss_pred eEEEEEeeccc--CCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHh
Q 000916 266 NIGYKIRLESK--GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDM 343 (1225)
Q Consensus 266 ~VGY~IR~es~--~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~l 343 (1225)
-|-|.+..-.. +.++..+.|. ..||.++... | ++|+|.|+ ||.+|- -+.++-.
T Consensus 295 PVE~~~~gI~Q~qVN~k~gltfa---~~LRa~LRqD-------------P-----DvImVGEI--RD~ETA--eiavqAa 349 (500)
T COG2804 295 PVEYQLPGINQVQVNPKIGLTFA---RALRAILRQD-------------P-----DVIMVGEI--RDLETA--EIAVQAA 349 (500)
T ss_pred CeeeecCCcceeecccccCCCHH---HHHHHHhccC-------------C-----CeEEEecc--CCHHHH--HHHHHHH
Confidence 34555543332 2344445444 4667665431 2 57999999 777663 3345554
Q ss_pred Cc
Q 000916 344 LP 345 (1225)
Q Consensus 344 l~ 345 (1225)
+.
T Consensus 350 lT 351 (500)
T COG2804 350 LT 351 (500)
T ss_pred hc
Confidence 43
No 253
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.19 E-value=0.49 Score=60.98 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=25.0
Q ss_pred CCccEEEecccccccc-chhHHHHHHHHhCcCCCCceEEEEccc
Q 000916 316 SALTHIIVDEIHERDR-YSDFMLAIIRDMLPSYPHLRLILMSAT 358 (1225)
Q Consensus 316 ~~~shVIvDEvHER~~-~tD~LL~lLk~ll~~~~~LKlILMSAT 358 (1225)
..+.+|||||||.-.- .-|+|+.+++.... ++-+|+|..++
T Consensus 868 r~v~IIILDEID~L~kK~QDVLYnLFR~~~~--s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKTQKVLFTLFDWPTK--INSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccHHHHHHHHHHHhhc--cCCeEEEEEec
Confidence 4567899999996332 34677777775432 34455554333
No 254
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=94.15 E-value=2.9 Score=50.87 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=81.2
Q ss_pred cCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecchhccc-----c
Q 000916 558 DSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETA-----I 632 (1225)
Q Consensus 558 ~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATNIAEtS-----I 632 (1225)
....+.+|||+|++-|-.++...|.... +....+|---+..+..++=..+-.|.++|+|-| |+- .
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~~-------~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~T---ER~HFfrRy 366 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKEN-------ISFVQISEYTSNSDISRARSQFFHGRKPILLYT---ERFHFFRRY 366 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhcC-------CeEEEecccCCHHHHHHHHHHHHcCCceEEEEE---hHHhhhhhc
Confidence 4567899999999999999999997542 566667766667776666555668999999999 655 7
Q ss_pred CCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHHHH
Q 000916 633 TIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRA 694 (1225)
Q Consensus 633 TI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~ 694 (1225)
.|-+|..||=+|.+....|-+.-- .+...... ..+=.....|..|||+.+.
T Consensus 367 ~irGi~~viFY~~P~~p~fY~El~--n~~~~~~~---------~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 367 RIRGIRHVIFYGPPENPQFYSELL--NMLDESSG---------GEVDAADATVTVLYSKYDA 417 (442)
T ss_pred eecCCcEEEEECCCCChhHHHHHH--hhhccccc---------ccccccCceEEEEecHhHH
Confidence 899999999999877666543210 01100000 1122345899999998654
No 255
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.11 E-value=0.16 Score=62.20 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=24.8
Q ss_pred CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecc
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQP 243 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQP 243 (1225)
.-++|.|++|||||+.+ +.+...........++++...
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEEEH
Confidence 45889999999999766 444444443333456666543
No 256
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.08 E-value=0.27 Score=62.40 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=26.7
Q ss_pred cccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEc
Q 000916 313 DDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMS 356 (1225)
Q Consensus 313 ~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMS 356 (1225)
+.+.++.+|||||||. +..+..-.+||.+-...++.++||.+
T Consensus 115 P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 115 PTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3567889999999995 33344444555543334566777654
No 257
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.04 E-value=0.23 Score=59.90 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=26.6
Q ss_pred CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecc
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQP 243 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQP 243 (1225)
..++|.|++|+|||+.+ +.|...+.......++++...
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEEH
Confidence 46789999999999877 666666554433456666543
No 258
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.03 E-value=0.37 Score=68.54 Aligned_cols=138 Identities=19% Similarity=0.158 Sum_probs=79.2
Q ss_pred CCCChHHHHHHHHHHHc--CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccC
Q 000916 187 KLPISSFKDVITSTVDS--NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIG 264 (1225)
Q Consensus 187 ~LPi~~~r~eIl~aI~~--~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG 264 (1225)
.++...-|.+.+..+.. ++++||+|..|+||||.+=. +++.+... +.+|++.-|+--+|..+++.+..+ .
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~-l~~~~~~~--G~~V~~lAPTgrAA~~L~e~~g~~-----A 498 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQL-LLHLASEQ--GYEIQIITAGSLSAQELRQKIPRL-----A 498 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHH-HHHHHHhc--CCeEEEEeCCHHHHHHHHHHhcch-----h
Confidence 34555666666666554 58999999999999987643 33333223 357888899988776666533111 0
Q ss_pred CeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhC
Q 000916 265 DNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDML 344 (1225)
Q Consensus 265 ~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll 344 (1225)
.++. ++-...... ...-|...++ ..+ ..|..-++|||||+- .+++..+..+|+.+.
T Consensus 499 ~Ti~---~~l~~l~~~--~~~~tv~~fl---~~~--------------~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~ 554 (1960)
T TIGR02760 499 STFI---TWVKNLFND--DQDHTVQGLL---DKS--------------SPFSNKDIFVVDEAN--KLSNNELLKLIDKAE 554 (1960)
T ss_pred hhHH---HHHHhhccc--ccchhHHHhh---ccc--------------CCCCCCCEEEEECCC--CCCHHHHHHHHHHHh
Confidence 0100 000000000 0011111122 111 235678999999997 577888888887653
Q ss_pred cCCCCceEEEEccc
Q 000916 345 PSYPHLRLILMSAT 358 (1225)
Q Consensus 345 ~~~~~LKlILMSAT 358 (1225)
. .+-||||+-=+
T Consensus 555 ~--~garvVlvGD~ 566 (1960)
T TIGR02760 555 Q--HNSKLILLNDS 566 (1960)
T ss_pred h--cCCEEEEEcCh
Confidence 3 45799987533
No 259
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.01 E-value=0.26 Score=51.48 Aligned_cols=116 Identities=26% Similarity=0.298 Sum_probs=64.0
Q ss_pred eEEEEccCCCchhchHHHHHHHHHhccCCc-cEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccC-------
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIWSKGET-CKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKG------- 277 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~~~~~~-~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~------- 277 (1225)
-+.|+|++|+||||.+ +.|.|.+-.+|-. +-++|-.=| .-|..+||.|.--...
T Consensus 7 ki~ITG~PGvGKtTl~-~ki~e~L~~~g~kvgGf~t~EVR-----------------~gGkR~GF~Ivdl~tg~~~~la~ 68 (179)
T COG1618 7 KIFITGRPGVGKTTLV-LKIAEKLREKGYKVGGFITPEVR-----------------EGGKRIGFKIVDLATGEEGILAR 68 (179)
T ss_pred EEEEeCCCCccHHHHH-HHHHHHHHhcCceeeeEEeeeee-----------------cCCeEeeeEEEEccCCceEEEEE
Confidence 3679999999999987 4555655444321 223332211 2377889887532210
Q ss_pred CCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCC
Q 000916 278 GKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSY 347 (1225)
Q Consensus 278 s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~ 347 (1225)
-......+.-.||.+..|..-.. ..+...+..-++|||||+--..+-+--....+..+|..-
T Consensus 69 ~~~~~~rvGkY~V~v~~le~i~~--------~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~ 130 (179)
T COG1618 69 VGFSRPRVGKYGVNVEGLEEIAI--------PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSG 130 (179)
T ss_pred cCCCCcccceEEeeHHHHHHHhH--------HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCC
Confidence 01133444445555544431100 001124455789999999876666666666667766543
No 260
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.00 E-value=0.23 Score=59.07 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=20.7
Q ss_pred HHHHHHcCC---eEEEEccCCCchhchHHHHH
Q 000916 197 ITSTVDSNQ---VVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 197 Il~aI~~~~---VvII~GeTGsGKTTQvPq~I 225 (1225)
+..++..++ .++++|+.|+||||..=.+.
T Consensus 28 l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la 59 (363)
T PRK14961 28 ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLA 59 (363)
T ss_pred HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHH
Confidence 445555544 47899999999998775543
No 261
>PRK06921 hypothetical protein; Provisional
Probab=94.00 E-value=0.3 Score=55.66 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.3
Q ss_pred cCCeEEEEccCCCchhchH
Q 000916 203 SNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQv 221 (1225)
.+..+++.|+||+|||+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4678999999999999655
No 262
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.96 E-value=0.26 Score=63.87 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=29.5
Q ss_pred cCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccccHHHH
Q 000916 315 VSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATLDADRF 364 (1225)
Q Consensus 315 L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATld~~~F 364 (1225)
-.++.++||||||. +..+..-.+||-+-.-.+++++|+. |-+..++
T Consensus 117 ~gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa--TTe~~kL 162 (944)
T PRK14949 117 RGRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA--TTDPQKL 162 (944)
T ss_pred cCCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE--CCCchhc
Confidence 35789999999995 4456666666655333345666664 6555543
No 263
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.94 E-value=0.12 Score=65.57 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=22.9
Q ss_pred HHHHHHHcCCe---EEEEccCCCchhchHHHH
Q 000916 196 VITSTVDSNQV---VLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 196 eIl~aI~~~~V---vII~GeTGsGKTTQvPq~ 224 (1225)
.+..++.++++ .+++|+.|+||||..=.|
T Consensus 27 ~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~l 58 (647)
T PRK07994 27 ALANALDLGRLHHAYLFSGTRGVGKTTIARLL 58 (647)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 45677777776 899999999999976444
No 264
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.90 E-value=0.34 Score=57.37 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=23.4
Q ss_pred HHHHHHHHcCC---eEEEEccCCCchhchHHHH
Q 000916 195 DVITSTVDSNQ---VVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 195 ~eIl~aI~~~~---VvII~GeTGsGKTTQvPq~ 224 (1225)
+.+..++.+++ .++|+|++|+||||..=.+
T Consensus 33 ~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~l 65 (351)
T PRK09112 33 AFLAQAYREGKLHHALLFEGPEGIGKATLAFHL 65 (351)
T ss_pred HHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHH
Confidence 45667777777 4899999999999976433
No 265
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=93.86 E-value=0.024 Score=47.95 Aligned_cols=52 Identities=33% Similarity=0.495 Sum_probs=40.2
Q ss_pred CCccceeeccCCccchhhhhhhccccchhhccccchhhhhccccCchhHHHH
Q 000916 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQI 513 (1225)
Q Consensus 462 g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 513 (1225)
|.||+|.++..|..+.+..|++.|++++.+|.+|.|+++.|-..++.++++.
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~ 52 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKF 52 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHH
Confidence 5689999999999999999999999999999999999998887777666554
No 266
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.79 E-value=0.32 Score=61.31 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=21.2
Q ss_pred HHHHHHHHcCC---eEEEEccCCCchhchHHH
Q 000916 195 DVITSTVDSNQ---VVLISGETGCGKTTQVPQ 223 (1225)
Q Consensus 195 ~eIl~aI~~~~---VvII~GeTGsGKTTQvPq 223 (1225)
..+..+|.+++ .++++|+.|+||||..=.
T Consensus 25 ~~L~~aI~~grl~HAyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 25 RALSSALERGRLHHAYLFTGTRGVGKTTIARI 56 (702)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 34555666654 679999999999987633
No 267
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.78 E-value=0.34 Score=59.35 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=27.3
Q ss_pred CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchH
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRR 245 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRR 245 (1225)
.-++|.|++|+|||+.+ +.+...+.......++++..+..
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~~~ 181 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSGDE 181 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEHHH
Confidence 45789999999999776 66665544333445777665543
No 268
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.75 E-value=0.25 Score=57.65 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=27.0
Q ss_pred HHHHHHHcCCeEEEEccCCCchhchHHHHHHHH
Q 000916 196 VITSTVDSNQVVLISGETGCGKTTQVPQFLLEH 228 (1225)
Q Consensus 196 eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~ 228 (1225)
.|+..+..++.++|.|++||||||.+-++.-.-
T Consensus 56 ~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 56 AICAGFAYDRRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred HHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHH
Confidence 377788888999999999999998887665444
No 269
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.69 E-value=0.33 Score=63.42 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=24.9
Q ss_pred cccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEE
Q 000916 313 DDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILM 355 (1225)
Q Consensus 313 ~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILM 355 (1225)
+...++.+|||||+|.-+ .+..-.|||-|-.--++..+||.
T Consensus 116 p~~~~~KV~IIDEad~lt--~~a~NaLLK~LEEpP~~~~fIl~ 156 (824)
T PRK07764 116 PAESRYKIFIIDEAHMVT--PQGFNALLKIVEEPPEHLKFIFA 156 (824)
T ss_pred hhcCCceEEEEechhhcC--HHHHHHHHHHHhCCCCCeEEEEE
Confidence 345789999999999643 34444444444333345566654
No 270
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=93.66 E-value=0.014 Score=50.04 Aligned_cols=43 Identities=42% Similarity=0.444 Sum_probs=29.6
Q ss_pred ccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhc
Q 000916 460 LTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLG 502 (1225)
Q Consensus 460 ~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~ 502 (1225)
..|.||||+++..|..+-+..|+..|++++.++.+|+|++++|
T Consensus 14 ~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 14 KYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 4588999999999999999999999999999999999998764
No 271
>PRK08727 hypothetical protein; Validated
Probab=93.64 E-value=0.23 Score=55.42 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=14.5
Q ss_pred CeEEEEccCCCchhchH
Q 000916 205 QVVLISGETGCGKTTQV 221 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQv 221 (1225)
+.++|.|++|||||+.+
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999654
No 272
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.58 E-value=0.5 Score=54.94 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=30.5
Q ss_pred ccCCccEEEeccccccccchhHHH-HHHHHhCcCC-CCceEEEEcccccHHHHHhhh
Q 000916 314 DVSALTHIIVDEIHERDRYSDFML-AIIRDMLPSY-PHLRLILMSATLDADRFSQYF 368 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~~tD~LL-~lLk~ll~~~-~~LKlILMSATld~~~Fs~yF 368 (1225)
.+.++.++||||+.--.+ ++..- .+|-.++..| -.-+-+++|--++.+.+.++|
T Consensus 214 ~l~~~dlLiIDDiG~e~~-s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 214 AVKEAPVLMLDDIGAEQM-SSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred HhcCCCEEEEecCCCccc-cHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 467889999999984333 22211 2222222222 122444556667788888887
No 273
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.56 E-value=0.33 Score=60.57 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=22.3
Q ss_pred HHHHHHHcCCe---EEEEccCCCchhchHHHHH
Q 000916 196 VITSTVDSNQV---VLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 196 eIl~aI~~~~V---vII~GeTGsGKTTQvPq~I 225 (1225)
.+..++..+++ ++++|+.|+||||..=.+.
T Consensus 27 ~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 27 SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 35666766554 7899999999999764443
No 274
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.51 E-value=0.11 Score=61.67 Aligned_cols=32 Identities=28% Similarity=0.604 Sum_probs=24.4
Q ss_pred HHHHHH-cCCeEEEEccCCCchhchHHHHHHHHH
Q 000916 197 ITSTVD-SNQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 197 Il~aI~-~~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
+.+++. .+..|+|+|+|||||||.+ ..+++..
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 555555 6789999999999999988 4455544
No 275
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=93.45 E-value=0.54 Score=60.55 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHH---HHHHhcCCCCCCceEE
Q 000916 546 VLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQ---QKKVFKRPPPGCRKII 622 (1225)
Q Consensus 546 ~Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~e---Q~~vF~~~p~g~rKII 622 (1225)
+|+..+|-++- ..++.||.|+.-..-+.-+-+.|.-. .+..+-|-|+-..++ +.++|..|....++.+
T Consensus 713 ELLDRiLPKLk--atgHRVLlF~qMTrlmdimEdyL~~~-------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fl 783 (1157)
T KOG0386|consen 713 ELLDRILPKLK--ATGHRVLLFSQMTRLMDILEDYLQIR-------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFL 783 (1157)
T ss_pred HHHHhhhHHHH--hcCcchhhHHHHHHHHHHHHHHHhhh-------hhheeeecCCcchhhHHHHHHHhcCCCCceeeee
Confidence 34444444432 35789999975444333333333321 255666777666655 5678998888899999
Q ss_pred EecchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHHHH
Q 000916 623 LSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRA 694 (1225)
Q Consensus 623 LATNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~~ 694 (1225)
++|-..-.|+..--..-|| .||+.-+-... -.|.-|+-|-|-.+.=..+||.+-..+
T Consensus 784 lstragglglNlQtadtvi--------ifdsdwnp~~d-------~qaqdrahrigq~~evRv~rl~tv~sv 840 (1157)
T KOG0386|consen 784 LSTRAGGLGLNLQTADTVI--------IFDSDWNPHQD-------LQAQDRAHRIGQKKEVRVLRLITVNSV 840 (1157)
T ss_pred eeecccccccchhhcceEE--------EecCCCCchhH-------HHHHHHHHHhhchhheeeeeeehhhHH
Confidence 9999999999887777777 34433221111 112334444455556778999886443
No 276
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.40 E-value=0.28 Score=60.39 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=20.6
Q ss_pred HHHHHHcCCe---EEEEccCCCchhchHHHH
Q 000916 197 ITSTVDSNQV---VLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 197 Il~aI~~~~V---vII~GeTGsGKTTQvPq~ 224 (1225)
+..++.++++ ++++|++||||||..=.+
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4455666654 789999999999976444
No 277
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.29 E-value=0.48 Score=58.89 Aligned_cols=43 Identities=28% Similarity=0.447 Sum_probs=25.9
Q ss_pred ccCCccEEEeccccccccchhHHHHHHHHhCcCCC-CceEEEEcccccH
Q 000916 314 DVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYP-HLRLILMSATLDA 361 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~-~LKlILMSATld~ 361 (1225)
.-..+.++||||||.- ..+..-.+|| .+...| +.++|+ ||-|.
T Consensus 116 ~~~~~kV~iIDE~~~l--s~~a~naLLk-~LEepp~~~~fIl--attd~ 159 (509)
T PRK14958 116 TKGRFKVYLIDEVHML--SGHSFNALLK-TLEEPPSHVKFIL--ATTDH 159 (509)
T ss_pred ccCCcEEEEEEChHhc--CHHHHHHHHH-HHhccCCCeEEEE--EECCh
Confidence 3467899999999953 3444445555 444443 556665 44444
No 278
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.28 E-value=0.23 Score=57.03 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=39.4
Q ss_pred CeEEEEccCCCchhchHHHHHHHHHhc---cCCccEEEEec-chHHHHHHHHHHHHHHhCCcc
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHIWS---KGETCKIVCTQ-PRRISATSVAERISVERGENI 263 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~~~---~~~~~~IicTQ-PRRiaAisvAeRVa~Erge~l 263 (1225)
..++|+|+||.|||+.+=.|.-.+.-. ....+.|+++| |-.-.-..+...+..++|...
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 568999999999999888887655322 22334566554 544455556666777776554
No 279
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.25 E-value=0.39 Score=58.24 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCchhchHHH
Q 000916 193 FKDVITSTVDSNQVVLISGETGCGKTTQVPQ 223 (1225)
Q Consensus 193 ~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq 223 (1225)
.-+.++.++..++.+++.|++|+||||..-.
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 4467888899999999999999999987754
No 280
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.22 E-value=0.15 Score=56.15 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=16.4
Q ss_pred cCCccEEEecccccccc-chhHHHHHHHH
Q 000916 315 VSALTHIIVDEIHERDR-YSDFMLAIIRD 342 (1225)
Q Consensus 315 L~~~shVIvDEvHER~~-~tD~LL~lLk~ 342 (1225)
+..=++++|||+|.-.. .-|+|+-.+-+
T Consensus 99 l~~~~ILFIDEIHRlnk~~qe~LlpamEd 127 (233)
T PF05496_consen 99 LKEGDILFIDEIHRLNKAQQEILLPAMED 127 (233)
T ss_dssp --TT-EEEECTCCC--HHHHHHHHHHHHC
T ss_pred cCCCcEEEEechhhccHHHHHHHHHHhcc
Confidence 44557899999996333 25677766653
No 281
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.21 E-value=0.27 Score=56.48 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=14.9
Q ss_pred CCeEEEEccCCCchhchH
Q 000916 204 NQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQv 221 (1225)
.-.+++.|++||||||..
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 346889999999999854
No 282
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.19 E-value=0.27 Score=59.22 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=21.3
Q ss_pred HHHHHHHcCCe---EEEEccCCCchhchHHHH
Q 000916 196 VITSTVDSNQV---VLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 196 eIl~aI~~~~V---vII~GeTGsGKTTQvPq~ 224 (1225)
.+..++.++++ ++++|+.|+||||..=.+
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHH
Confidence 35556666644 789999999999876433
No 283
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.15 E-value=0.6 Score=54.14 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=22.9
Q ss_pred CCccEEEeccccccccchhHHHHHHHHhCcCCC-CceEEEEc
Q 000916 316 SALTHIIVDEIHERDRYSDFMLAIIRDMLPSYP-HLRLILMS 356 (1225)
Q Consensus 316 ~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~-~LKlILMS 356 (1225)
.+..+|||||+|.-. ++-....|+.++...+ +.++|+.+
T Consensus 99 ~~~~vliiDe~d~l~--~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRLG--LADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCCeEEEEECccccc--CHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467899999998431 2223445566555543 45666543
No 284
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.09 E-value=0.72 Score=53.28 Aligned_cols=17 Identities=41% Similarity=0.601 Sum_probs=14.6
Q ss_pred eEEEEccCCCchhchHH
Q 000916 206 VVLISGETGCGKTTQVP 222 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvP 222 (1225)
.+++.|++||||||.+=
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999997663
No 285
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.95 E-value=0.16 Score=59.69 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=31.5
Q ss_pred HHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchH
Q 000916 197 ITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRR 245 (1225)
Q Consensus 197 Il~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRR 245 (1225)
+-.+++....++|+|+|||||||.+ -.|++..- ..-+|++.+-+.
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll-~aL~~~ip---~~~ri~tiEd~~ 197 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFT-NAALREIP---AIERLITVEDAR 197 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHH-HHHHhhCC---CCCeEEEecCCC
Confidence 4456788999999999999999998 34454432 234676655443
No 286
>PRK12377 putative replication protein; Provisional
Probab=92.94 E-value=0.92 Score=51.17 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.2
Q ss_pred cCCeEEEEccCCCchhchHH
Q 000916 203 SNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvP 222 (1225)
....+++.|++|||||+..-
T Consensus 100 ~~~~l~l~G~~GtGKThLa~ 119 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAA 119 (248)
T ss_pred cCCeEEEECCCCCCHHHHHH
Confidence 34789999999999996543
No 287
>PHA02533 17 large terminase protein; Provisional
Probab=92.92 E-value=0.99 Score=56.43 Aligned_cols=153 Identities=21% Similarity=0.249 Sum_probs=94.2
Q ss_pred CCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCC-
Q 000916 187 KLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGD- 265 (1225)
Q Consensus 187 ~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~- 265 (1225)
.++...+|.+|+..+..++..+|.-+=.-||||.+-.+++..+... ...+|+|+-|.+-.|..+.+++..-.. .+..
T Consensus 57 Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~~~QA~~vF~~ik~~ie-~~P~l 134 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHKASMAAEVLDRTKQAIE-LLPDF 134 (534)
T ss_pred ecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHH-hCHHH
Confidence 4778889999999887777778888889999999987776554432 235899999999999998887753221 1100
Q ss_pred -eEEE------EEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCC--ccEEEeccccccccchhHH
Q 000916 266 -NIGY------KIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSA--LTHIIVDEIHERDRYSDFM 336 (1225)
Q Consensus 266 -~VGY------~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~--~shVIvDEvHER~~~tD~L 336 (1225)
..+. .|.+ ...+.|.+.|.. + ..+.+ ++.+|+||+|.-.-..+++
T Consensus 135 ~~~~i~~~~~~~I~l----~NGS~I~~lss~---------~-------------~t~rG~~~~~liiDE~a~~~~~~e~~ 188 (534)
T PHA02533 135 LQPGIVEWNKGSIEL----ENGSKIGAYASS---------P-------------DAVRGNSFAMIYIDECAFIPNFIDFW 188 (534)
T ss_pred hhcceeecCccEEEe----CCCCEEEEEeCC---------C-------------CccCCCCCceEEEeccccCCCHHHHH
Confidence 0110 1222 123445454432 1 12233 3568999999753333444
Q ss_pred HHHHHHhCcCCCCceEEEEcccccHHHHHhhh
Q 000916 337 LAIIRDMLPSYPHLRLILMSATLDADRFSQYF 368 (1225)
Q Consensus 337 L~lLk~ll~~~~~LKlILMSATld~~~Fs~yF 368 (1225)
- .+...+.....-++++.|..-....|-+.+
T Consensus 189 ~-ai~p~lasg~~~r~iiiSTp~G~n~fye~~ 219 (534)
T PHA02533 189 L-AIQPVISSGRSSKIIITSTPNGLNHFYDIW 219 (534)
T ss_pred H-HHHHHHHcCCCceEEEEECCCchhhHHHHH
Confidence 3 345555554556788888775333355444
No 288
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.92 E-value=0.54 Score=61.99 Aligned_cols=122 Identities=20% Similarity=0.374 Sum_probs=64.4
Q ss_pred eEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccEEE
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVF 285 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I~f 285 (1225)
++++.|+||+|||... ..|.+.+++.. ..+++.. .+..+-...++.-.|...| .|||.
T Consensus 598 ~~lf~Gp~GvGKT~lA-~~La~~l~~~~--~~~~~~d---mse~~~~~~~~~l~g~~~g-yvg~~--------------- 655 (852)
T TIGR03345 598 VFLLVGPSGVGKTETA-LALAELLYGGE--QNLITIN---MSEFQEAHTVSRLKGSPPG-YVGYG--------------- 655 (852)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHhCCC--cceEEEe---HHHhhhhhhhccccCCCCC-ccccc---------------
Confidence 6899999999999644 33444454322 2344433 2222223334333343333 24442
Q ss_pred EccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccc-hhHHHHHHHHhC-cC-------CCCceEEEEc
Q 000916 286 CTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRY-SDFMLAIIRDML-PS-------YPHLRLILMS 356 (1225)
Q Consensus 286 ~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~-tD~LL~lLk~ll-~~-------~~~LKlILMS 356 (1225)
..|.|...+... .+++|++||++.-+.+ .++|+.++-+-. .- ..+ .+|+|+
T Consensus 656 -~~g~L~~~v~~~------------------p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n-~iiI~T 715 (852)
T TIGR03345 656 -EGGVLTEAVRRK------------------PYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKN-TVILLT 715 (852)
T ss_pred -ccchHHHHHHhC------------------CCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccc-cEEEEe
Confidence 246676666543 4689999999853322 233443332211 00 022 567777
Q ss_pred ccccHHHHHhhhC
Q 000916 357 ATLDADRFSQYFG 369 (1225)
Q Consensus 357 ATld~~~Fs~yF~ 369 (1225)
..+-.+.+.+.+.
T Consensus 716 SNlg~~~~~~~~~ 728 (852)
T TIGR03345 716 SNAGSDLIMALCA 728 (852)
T ss_pred CCCchHHHHHhcc
Confidence 7776666666553
No 289
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.82 E-value=0.59 Score=57.96 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=19.7
Q ss_pred HHHHHcCC---eEEEEccCCCchhchHHHH
Q 000916 198 TSTVDSNQ---VVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 198 l~aI~~~~---VvII~GeTGsGKTTQvPq~ 224 (1225)
..++.+++ .++++|+.|+||||..=.+
T Consensus 34 ~~ai~~~ri~~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 34 SYTILNDRLAGGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred HHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 33455554 6899999999999876443
No 290
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.82 E-value=0.55 Score=58.69 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=24.9
Q ss_pred cccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEE
Q 000916 313 DDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILM 355 (1225)
Q Consensus 313 ~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILM 355 (1225)
+...++.++||||+|.-+. ...-.+||-+-.-.++..+||.
T Consensus 115 p~~~~~kVvIIDEad~ls~--~a~naLLK~LEepp~~~~fIL~ 155 (527)
T PRK14969 115 PTRGRFKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILA 155 (527)
T ss_pred cccCCceEEEEcCcccCCH--HHHHHHHHHHhCCCCCEEEEEE
Confidence 3557889999999995433 3333455554333345666664
No 291
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=92.73 E-value=0.048 Score=62.60 Aligned_cols=64 Identities=31% Similarity=0.456 Sum_probs=58.1
Q ss_pred ccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHH
Q 000916 454 YNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517 (1225)
Q Consensus 454 ~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~ 517 (1225)
+|.+-++-|-|+||.+-..|++..+..||..|||.|.+|.+|.||+-.|...++.|++.+|-.+
T Consensus 332 VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~ 395 (452)
T KOG0514|consen 332 VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV 395 (452)
T ss_pred cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence 4667788899999999999999999999999999999999999999999999999988877554
No 292
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.71 E-value=0.6 Score=59.11 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=25.2
Q ss_pred cccCCccEEEeccccccccchhHHHHHHHHhCcCCC-CceEEEEc
Q 000916 313 DDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYP-HLRLILMS 356 (1225)
Q Consensus 313 ~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~-~LKlILMS 356 (1225)
+...++.++||||||. +..+..-.+||- +...| ..++||.+
T Consensus 120 p~~g~~KV~IIDEvh~--Ls~~a~NaLLKt-LEEPP~~~~fIL~T 161 (618)
T PRK14951 120 PVQGRFKVFMIDEVHM--LTNTAFNAMLKT-LEEPPEYLKFVLAT 161 (618)
T ss_pred cccCCceEEEEEChhh--CCHHHHHHHHHh-cccCCCCeEEEEEE
Confidence 3456799999999995 344444444544 44443 45666643
No 293
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=92.65 E-value=1.4 Score=50.66 Aligned_cols=144 Identities=19% Similarity=0.186 Sum_probs=75.3
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEE-EEEeecccCCCCcc
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIG-YKIRLESKGGKHSS 282 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VG-Y~IR~es~~s~~t~ 282 (1225)
..-.+|==.||+||--|+--.|+|.... |..-.|.++...-+- .=|+|=-.-.|..--.... .........+-..-
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-Gr~r~vwvS~s~dL~--~Da~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~G 138 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLR-GRKRAVWVSVSNDLK--YDAERDLRDIGADNIPVHPLNKFKYGDIIRLKEG 138 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHc-CCCceEEEECChhhh--hHHHHHHHHhCCCcccceechhhccCcCCCCCCC
Confidence 4555666679999999999999999764 333457777754331 1133322222221100000 00111111222445
Q ss_pred EEEEccHHHHHHHHhcCcccccccCCCcccc---cc-CC-ccEEEecccccc-ccch--------hHHHHHHHHhCcCCC
Q 000916 283 IVFCTNGVLLRLLVSQGVSRLKEASNKPAKD---DV-SA-LTHIIVDEIHER-DRYS--------DFMLAIIRDMLPSYP 348 (1225)
Q Consensus 283 I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~---~L-~~-~shVIvDEvHER-~~~t--------D~LL~lLk~ll~~~~ 348 (1225)
|+|||.-.|...-..... ....++. ++ .+ =.+||+||+|.- +..+ ......|. .+-|
T Consensus 139 vlF~TYs~L~~~~~~~~~------~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ---~~LP 209 (303)
T PF13872_consen 139 VLFSTYSTLISESQSGGK------YRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQ---NRLP 209 (303)
T ss_pred ccchhHHHHHhHHhccCC------ccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHH---HhCC
Confidence 999999888776543210 0001110 11 11 138999999962 2222 12222233 3347
Q ss_pred CceEEEEcccc
Q 000916 349 HLRLILMSATL 359 (1225)
Q Consensus 349 ~LKlILMSATl 359 (1225)
+-|+|.+|||-
T Consensus 210 ~ARvvY~SATg 220 (303)
T PF13872_consen 210 NARVVYASATG 220 (303)
T ss_pred CCcEEEecccc
Confidence 78999999995
No 294
>CHL00181 cbbX CbbX; Provisional
Probab=92.59 E-value=0.64 Score=53.61 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=15.4
Q ss_pred CCeEEEEccCCCchhchHH
Q 000916 204 NQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvP 222 (1225)
+-.+++.|++||||||..=
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568899999999997543
No 295
>PRK05642 DNA replication initiation factor; Validated
Probab=92.58 E-value=0.43 Score=53.25 Aligned_cols=48 Identities=10% Similarity=0.229 Sum_probs=28.1
Q ss_pred ccCCccEEEeccccccccc---hhHHHHHHHHhCcCCCCceEEEEcccccHHHH
Q 000916 314 DVSALTHIIVDEIHERDRY---SDFMLAIIRDMLPSYPHLRLILMSATLDADRF 364 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~~---tD~LL~lLk~ll~~~~~LKlILMSATld~~~F 364 (1225)
.+.++.++|||++|--... ...|+.++-.+... =+.|++++|.....+
T Consensus 94 ~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~---g~~ilits~~~p~~l 144 (234)
T PRK05642 94 NLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS---GRRLLLAASKSPREL 144 (234)
T ss_pred hhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc---CCEEEEeCCCCHHHc
Confidence 3556789999999942211 23355555443222 256788888755433
No 296
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.52 E-value=0.12 Score=55.36 Aligned_cols=31 Identities=42% Similarity=0.578 Sum_probs=24.4
Q ss_pred HHHHHHHcCCeEEEEccCCCchhchHHHHHHH
Q 000916 196 VITSTVDSNQVVLISGETGCGKTTQVPQFLLE 227 (1225)
Q Consensus 196 eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe 227 (1225)
-+-.+++.+.+++|+|+|||||||.+-. |+.
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~a-L~~ 47 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNA-LLA 47 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHH-HHh
Confidence 3445678899999999999999998833 443
No 297
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=92.47 E-value=0.22 Score=56.78 Aligned_cols=114 Identities=25% Similarity=0.262 Sum_probs=60.3
Q ss_pred cCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCcc
Q 000916 203 SNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSS 282 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~ 282 (1225)
...+.+..||.|+|||+.+-.|--+-.-..-.+|+|+ ..-.+.|||-.++. -.|. .-.+
T Consensus 56 ~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl------------~lnaSderGisvvr---~Kik------~fak 114 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL------------ELNASDERGISVVR---EKIK------NFAK 114 (346)
T ss_pred CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh------------hhcccccccccchh---hhhc------CHHH
Confidence 4567899999999999887665443321122233332 12245666654321 1110 0011
Q ss_pred EEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccc
Q 000916 283 IVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATL 359 (1225)
Q Consensus 283 I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATl 359 (1225)
+.+... ..++ ....-+.+||+||+|- +-+|.-.++.|-+-..-...+.||..--+
T Consensus 115 l~~~~~-------~~~~-------------~~~~~fKiiIlDEcds--mtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 115 LTVLLK-------RSDG-------------YPCPPFKIIILDECDS--MTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred Hhhccc-------cccC-------------CCCCcceEEEEechhh--hhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 111111 0111 2456789999999994 55666555555443333466777765433
No 298
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.45 E-value=0.43 Score=53.29 Aligned_cols=20 Identities=10% Similarity=0.311 Sum_probs=16.4
Q ss_pred CCeEEEEccCCCchhchHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQ 223 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq 223 (1225)
...++|.|++|||||+.+-.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46789999999999976543
No 299
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.39 E-value=0.23 Score=59.20 Aligned_cols=39 Identities=33% Similarity=0.357 Sum_probs=26.1
Q ss_pred HcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEe
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCT 241 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicT 241 (1225)
..+-.++|+|+|||||||.+ ..+++.........+|+..
T Consensus 147 ~~~GlilI~G~TGSGKTT~l-~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLA-ASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEE
Confidence 45668899999999999988 4455554332233456544
No 300
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.39 E-value=0.36 Score=53.37 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=28.2
Q ss_pred ccCCccEEEeccccccccc---hhHHHHHHHHhCcCCCCceEEEEccc
Q 000916 314 DVSALTHIIVDEIHERDRY---SDFMLAIIRDMLPSYPHLRLILMSAT 358 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~~---tD~LL~lLk~ll~~~~~LKlILMSAT 358 (1225)
.+.+++++|||.+|.=.-. .+.|+.++..+... +-++|+.|..
T Consensus 94 ~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~ 139 (219)
T PF00308_consen 94 RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDR 139 (219)
T ss_dssp HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCC
Confidence 4678899999999963222 35666666666544 3366666643
No 301
>PRK04195 replication factor C large subunit; Provisional
Probab=92.37 E-value=0.8 Score=56.67 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=17.4
Q ss_pred CCeEEEEccCCCchhchHHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ 224 (1225)
.+.++|.|++||||||.+=.+
T Consensus 39 ~~~lLL~GppG~GKTtla~al 59 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHAL 59 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 578999999999999877433
No 302
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.20 E-value=0.51 Score=52.41 Aligned_cols=40 Identities=25% Similarity=0.503 Sum_probs=31.6
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEe
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCT 241 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicT 241 (1225)
+..+.+++|.|++||||||..-||+++.+. ++..|..+-+
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~ 61 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITT 61 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEc
Confidence 446889999999999999999999988764 4555555544
No 303
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.17 E-value=0.55 Score=57.42 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=24.5
Q ss_pred eEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecch
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPR 244 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPR 244 (1225)
-++|.|++|||||+.+ +.|...+.......+++++...
T Consensus 132 ~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 132 PLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred eEEEEcCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEHH
Confidence 4899999999999765 4444443333334566666543
No 304
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.16 E-value=0.35 Score=56.65 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=15.1
Q ss_pred CCeEEEEccCCCchhchH
Q 000916 204 NQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQv 221 (1225)
.+.++|.|++||||||..
T Consensus 51 ~~~~ll~GppG~GKT~la 68 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CCcEEEECCCCccHHHHH
Confidence 357899999999999655
No 305
>PRK13695 putative NTPase; Provisional
Probab=92.13 E-value=0.65 Score=49.10 Aligned_cols=18 Identities=44% Similarity=0.626 Sum_probs=15.5
Q ss_pred EEEEccCCCchhchHHHH
Q 000916 207 VLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 207 vII~GeTGsGKTTQvPq~ 224 (1225)
++|+|+.||||||.+=.+
T Consensus 3 i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKI 20 (174)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999988754
No 306
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.05 E-value=0.73 Score=58.08 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=25.3
Q ss_pred cccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEE
Q 000916 313 DDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILM 355 (1225)
Q Consensus 313 ~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILM 355 (1225)
+....+.+|||||+|.- .++..-.+||-+=.-.++..+|+.
T Consensus 114 P~~~~~KVvIIDEah~L--t~~A~NALLK~LEEpp~~~~fIL~ 154 (584)
T PRK14952 114 PAQSRYRIFIVDEAHMV--TTAGFNALLKIVEEPPEHLIFIFA 154 (584)
T ss_pred hhcCCceEEEEECCCcC--CHHHHHHHHHHHhcCCCCeEEEEE
Confidence 45678999999999953 444544555544333335555553
No 307
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.03 E-value=1 Score=57.06 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=25.9
Q ss_pred cccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEc
Q 000916 313 DDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMS 356 (1225)
Q Consensus 313 ~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMS 356 (1225)
+....+.+|||||+|.-+ ....-.+||-+-.-.++..+|+.+
T Consensus 128 P~~a~~KVvIIDEad~Ls--~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 128 PVSARYKVYIIDEVHMLS--TAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hhcCCcEEEEEEChHhCC--HHHHHHHHHHHHhCCCCeEEEEEe
Confidence 467889999999999643 333334444432233456777753
No 308
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.95 E-value=0.65 Score=49.72 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=22.6
Q ss_pred HHHHHHHcCC---eEEEEccCCCchhchHHHHH
Q 000916 196 VITSTVDSNQ---VVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 196 eIl~aI~~~~---VvII~GeTGsGKTTQvPq~I 225 (1225)
.+.++|.+++ .+++.|++|+||||..=.+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~ 35 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALA 35 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4667777764 58899999999998764443
No 309
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=91.90 E-value=1.1 Score=49.65 Aligned_cols=144 Identities=16% Similarity=0.213 Sum_probs=80.3
Q ss_pred HHHhhcCCCChHHHHHHHHHHHcC---CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHH
Q 000916 181 IVEERSKLPISSFKDVITSTVDSN---QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISV 257 (1225)
Q Consensus 181 ~~~~R~~LPi~~~r~eIl~aI~~~---~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~ 257 (1225)
+++...++=|...|.+|...+.+. ...+..--.|-||||-|--. +-..++.+. .-+.++-|.-+ ..+.++-+-.
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pm-la~~LAdg~-~LvrviVpk~L-l~q~~~~L~~ 91 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPM-LALALADGS-RLVRVIVPKAL-LEQMRQMLRS 91 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHH-HHHHHcCCC-cEEEEEcCHHH-HHHHHHHHHH
Confidence 456677788888888888887764 67888999999999965332 223444443 23334445433 2333333333
Q ss_pred HhCCccCCeEEEEEeecccCC-----------------CCccEEEEccHHHHHHHHhcC--cccccccCCC---cccccc
Q 000916 258 ERGENIGDNIGYKIRLESKGG-----------------KHSSIVFCTNGVLLRLLVSQG--VSRLKEASNK---PAKDDV 315 (1225)
Q Consensus 258 Erge~lG~~VGY~IR~es~~s-----------------~~t~I~f~T~GvLLr~L~~~~--~~~~~~~~~~---~~~~~L 315 (1225)
-+|.-+|..| |.+.|+.... ....|+.|||.-+|......- .........+ .....|
T Consensus 92 ~lg~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l 170 (229)
T PF12340_consen 92 RLGGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWL 170 (229)
T ss_pred HHHHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3343444433 5666665432 234699999997765322210 0000000000 112356
Q ss_pred CCccEEEeccccc
Q 000916 316 SALTHIIVDEIHE 328 (1225)
Q Consensus 316 ~~~shVIvDEvHE 328 (1225)
...+.=|+||.||
T Consensus 171 ~~~~rdilDEsDe 183 (229)
T PF12340_consen 171 DEHSRDILDESDE 183 (229)
T ss_pred HhcCCeEeECchh
Confidence 6677789999985
No 310
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=91.90 E-value=1 Score=58.77 Aligned_cols=123 Identities=24% Similarity=0.296 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCc--eEEEe
Q 000916 547 LIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCR--KIILS 624 (1225)
Q Consensus 547 Li~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~r--KIILA 624 (1225)
.++-||+.+. ..+..+|||- .+.++.+.|+.- + +...+..+-|-|+-..++|+...++|....| ..|||
T Consensus 1264 tLAiLLqQLk--~eghRvLIfT----QMtkmLDVLeqF--L-nyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILS 1334 (1958)
T KOG0391|consen 1264 TLAILLQQLK--SEGHRVLIFT----QMTKMLDVLEQF--L-NYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILS 1334 (1958)
T ss_pred HHHHHHHHHH--hcCceEEehh----HHHHHHHHHHHH--H-hhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEe
Confidence 3444555543 3467899994 344444544431 1 1123778889999999999888888876644 46899
Q ss_pred cchhccccCCCCeEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcceEEEEecCHHH
Q 000916 625 TNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLR 693 (1225)
Q Consensus 625 TNIAEtSITI~dV~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~G~CyrLys~~~ 693 (1225)
|--.-+||++-+.+-|| .||..-| +.=-|.|.-|+-|-|+|+.=+.|||.|+..
T Consensus 1335 TrSggvGiNLtgADTVv--------FYDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1335 TRSGGVGINLTGADTVV--------FYDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ccCCccccccccCceEE--------EecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 99999999999999999 5776544 344578888999999999999999999754
No 311
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=91.85 E-value=0.46 Score=54.77 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=36.1
Q ss_pred HHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCC---ccEEEEecchHH
Q 000916 196 VITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGE---TCKIVCTQPRRI 246 (1225)
Q Consensus 196 eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~---~~~IicTQPRRi 246 (1225)
.|.+++.++..++|.++||+|||..+-...+......+. ..+|++..++..
T Consensus 19 ~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~ 72 (289)
T smart00488 19 ELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVS 72 (289)
T ss_pred HHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHH
Confidence 477788899999999999999998877766654433222 136666655544
No 312
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=91.85 E-value=0.46 Score=54.77 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=36.1
Q ss_pred HHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCC---ccEEEEecchHH
Q 000916 196 VITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGE---TCKIVCTQPRRI 246 (1225)
Q Consensus 196 eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~---~~~IicTQPRRi 246 (1225)
.|.+++.++..++|.++||+|||..+-...+......+. ..+|++..++..
T Consensus 19 ~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~ 72 (289)
T smart00489 19 ELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVS 72 (289)
T ss_pred HHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHH
Confidence 477788899999999999999998877766654433222 136666655544
No 313
>COG1847 Jag Predicted RNA-binding protein [General function prediction only]
Probab=91.85 E-value=0.48 Score=51.26 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=38.3
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHHH-cCCeeeccCCCCceEEEEec
Q 000916 43 KDEVYTFDANLSNRERAVVHEVCKK-MGMTSKSSGRGKQRRVSVCK 87 (1225)
Q Consensus 43 ~~~e~~f~~~~~~~eR~~ih~~a~~-lGL~sks~g~g~~r~l~v~k 87 (1225)
..+....+| |++.||+.||...++ -|+.|.|-|.|++|+|+|.+
T Consensus 163 tg~~v~L~p-M~~~ERkIVH~~l~~~~~V~T~SeG~ep~R~vVV~~ 207 (208)
T COG1847 163 TGRSVELEP-MPPFERKIVHTALSANPGVETYSEGEEPNRRVVVRP 207 (208)
T ss_pred hCCeeecCC-CCHHHHHHHHHHHHhcCCcceeecCCCCceEEEEec
Confidence 456677876 999999999999766 68999999999999999964
No 314
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.83 E-value=0.43 Score=58.41 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=28.3
Q ss_pred HHHHH-HHHcCCeEEEEccCCCchhchHHHHHHHHH
Q 000916 195 DVITS-TVDSNQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 195 ~eIl~-aI~~~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
++++. =+..+.+++|.|++|+||||..-|++.+..
T Consensus 70 D~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a 105 (446)
T PRK11823 70 DRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA 105 (446)
T ss_pred HHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34443 355688999999999999999999988765
No 315
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.82 E-value=0.8 Score=53.52 Aligned_cols=144 Identities=20% Similarity=0.240 Sum_probs=84.7
Q ss_pred hcCCCChHHHHHHHHHHHcC--CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCc
Q 000916 185 RSKLPISSFKDVITSTVDSN--QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGEN 262 (1225)
Q Consensus 185 R~~LPi~~~r~eIl~aI~~~--~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~ 262 (1225)
-.--|-..+|.-.|+++... ..|.+.|.-|||||..---.-|+....++..-+||+|.|. ..
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~----------------vp 287 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT----------------VP 287 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC----------------cC
Confidence 34568888888999999765 4577899999999977666666666555556689999996 45
Q ss_pred cCCeEEEEEeecc-cCCC-------Cc----cEEEEccHHHHHHHHhcCcccccccCCCccccccCC----ccEEEeccc
Q 000916 263 IGDNIGYKIRLES-KGGK-------HS----SIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSA----LTHIIVDEI 326 (1225)
Q Consensus 263 lG~~VGY~IR~es-~~s~-------~t----~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~----~shVIvDEv 326 (1225)
+|+.+||--..+. +..+ +- +.-=||.+.|-..|....+.. +.+ ..+++ =++|||||+
T Consensus 288 vG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev------~al-t~IRGRSl~~~FiIIDEa 360 (436)
T COG1875 288 VGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEV------EAL-TYIRGRSLPDSFIIIDEA 360 (436)
T ss_pred cccccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceee------eee-eeecccccccceEEEehh
Confidence 6777777443222 1111 11 222344555555444332100 000 01111 157999999
Q ss_pred cccccchhHHHHHHHHhCcCCCCceEEEEc
Q 000916 327 HERDRYSDFMLAIIRDMLPSYPHLRLILMS 356 (1225)
Q Consensus 327 HER~~~tD~LL~lLk~ll~~~~~LKlILMS 356 (1225)
.--+. --+..+|-++ -+.-|||+|.
T Consensus 361 QNLTp--heikTiltR~---G~GsKIVl~g 385 (436)
T COG1875 361 QNLTP--HELKTILTRA---GEGSKIVLTG 385 (436)
T ss_pred hccCH--HHHHHHHHhc---cCCCEEEEcC
Confidence 84332 2333444332 4678999874
No 316
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=91.78 E-value=0.18 Score=53.33 Aligned_cols=125 Identities=22% Similarity=0.276 Sum_probs=71.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCCceEEEecc--hhccccCCCC-
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTN--IAETAITIDD- 636 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~rKIILATN--IAEtSITI~d- 636 (1225)
.+|.+|||+|+++.++.+.+.+...... ..+.++.= + ..+..++.+.+..+..-|++|+. -..-||+++|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~---~~~~v~~q-~---~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE---KGIPVFVQ-G---SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E----ETSCEEES-T---CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc---ccceeeec-C---cchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 4699999999999999999888653210 11222222 2 33455565556667888999998 7788999997
Q ss_pred -eEEEEeCCCcccccccCCCCc--ccc-------cccc---cCHhhHHhhcCccCCCcc--eEEEEecCH
Q 000916 637 -VVYVIDSGRMKEKSYDPYNNV--STL-------QSSW---VSKASAKQRAGRAGRCQA--GICYHLYSQ 691 (1225)
Q Consensus 637 -V~~VIDsG~~Ke~~yd~~~~~--s~L-------~~~w---iSkasa~QR~GRAGR~~~--G~CyrLys~ 691 (1225)
.+.||=.|++-....|+.... ..+ -..| -.--...|=.||+=|... |..+-|=++
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 888998888765544432110 000 0112 222246777899988766 766655433
No 317
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.76 E-value=0.53 Score=62.49 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.5
Q ss_pred HcCCeEEEEccCCCchhchHHHHHH
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFLL 226 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~IL 226 (1225)
...++++|+|+.|.||||.+-||+-
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~ 54 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAA 54 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999984
No 318
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.71 E-value=1 Score=55.49 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=25.1
Q ss_pred cccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEE
Q 000916 313 DDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILM 355 (1225)
Q Consensus 313 ~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILM 355 (1225)
|....+.++||||||.-+ .+..-.+||-+-.-.++.++|+.
T Consensus 112 P~~~~~KVvIIDEah~Ls--~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 112 PISSKFKVYIIDEVHMLS--NSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred cccCCceEEEEeChHhCC--HHHHHHHHHHHhCCCCCeEEEEE
Confidence 456789999999999543 33334445544333345566654
No 319
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.62 E-value=0.85 Score=57.60 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=20.8
Q ss_pred HHHHHHHHcCC---eEEEEccCCCchhchHHH
Q 000916 195 DVITSTVDSNQ---VVLISGETGCGKTTQVPQ 223 (1225)
Q Consensus 195 ~eIl~aI~~~~---VvII~GeTGsGKTTQvPq 223 (1225)
..+..++.+++ .++++|+.|+||||..=.
T Consensus 26 ~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 26 AILSRAAQENRVAPAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 34555566654 488999999999987643
No 320
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.51 E-value=1 Score=50.91 Aligned_cols=119 Identities=19% Similarity=0.329 Sum_probs=65.1
Q ss_pred HHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecc
Q 000916 196 VITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLES 275 (1225)
Q Consensus 196 eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es 275 (1225)
.+.+.+..+..+++.|++|.|||.. |+.++.+++ .. |
T Consensus 97 ~~~~~~~~~~nl~l~G~~G~GKThL---------------------------a~Ai~~~l~-~~----g----------- 133 (254)
T COG1484 97 SLVEFFERGENLVLLGPPGVGKTHL---------------------------AIAIGNELL-KA----G----------- 133 (254)
T ss_pred HHHHHhccCCcEEEECCCCCcHHHH---------------------------HHHHHHHHH-Hc----C-----------
Confidence 3444556888999999999999932 233444443 11 1
Q ss_pred cCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccc---hhHHHHHHHHhCcCCCCceE
Q 000916 276 KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRY---SDFMLAIIRDMLPSYPHLRL 352 (1225)
Q Consensus 276 ~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~---tD~LL~lLk~ll~~~~~LKl 352 (1225)
-+++|.|..=|++.|...... ......+...+.++.++||||+=-.... .|.++.++-.....+ ++
T Consensus 134 -----~sv~f~~~~el~~~Lk~~~~~---~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~ 202 (254)
T COG1484 134 -----ISVLFITAPDLLSKLKAAFDE---GRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL 202 (254)
T ss_pred -----CeEEEEEHHHHHHHHHHHHhc---CchHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc
Confidence 135556666566666543100 0000012234789999999999753333 355555444433332 22
Q ss_pred EEEcccccHHHHHhhhC
Q 000916 353 ILMSATLDADRFSQYFG 369 (1225)
Q Consensus 353 ILMSATld~~~Fs~yF~ 369 (1225)
+++.=.+.+...+-|+
T Consensus 203 -~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 203 -IITSNLSFGEWDELFG 218 (254)
T ss_pred -eeecCCChHHHHhhcc
Confidence 4444456666666665
No 321
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=1 Score=53.71 Aligned_cols=126 Identities=20% Similarity=0.344 Sum_probs=64.2
Q ss_pred eEEEEccCCCchhchHHHHHHHHHhccC--C-ccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCcc
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIWSKG--E-TCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSS 282 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~~~~--~-~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~ 282 (1225)
.++|.|+||+||| ++.+|+.+...... . .+-|=|..=+ .-.++..+++...+. + +.+.
T Consensus 44 n~~iyG~~GTGKT-~~~~~v~~~l~~~~~~~~~~yINc~~~~--t~~~i~~~i~~~~~~---------~-------p~~g 104 (366)
T COG1474 44 NIIIYGPTGTGKT-ATVKFVMEELEESSANVEVVYINCLELR--TPYQVLSKILNKLGK---------V-------PLTG 104 (366)
T ss_pred cEEEECCCCCCHh-HHHHHHHHHHHhhhccCceEEEeeeeCC--CHHHHHHHHHHHcCC---------C-------CCCC
Confidence 3888999999996 56688888865421 1 1223232211 112344455554431 0 1111
Q ss_pred EEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccccccc-chhHHHHHHHHhCcCCCCceEEEEcccccH
Q 000916 283 IVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDR-YSDFMLAIIRDMLPSYPHLRLILMSATLDA 361 (1225)
Q Consensus 283 I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~-~tD~LL~lLk~ll~~~~~LKlILMSATld~ 361 (1225)
+ ...-++..|...- ......-.||+||++-.-- +.|.|..++|.--.. +.||++..-+-+
T Consensus 105 ~---~~~~~~~~l~~~~-------------~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~- 165 (366)
T COG1474 105 D---SSLEILKRLYDNL-------------SKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSND- 165 (366)
T ss_pred C---chHHHHHHHHHHH-------------HhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEecc-
Confidence 1 1123344443321 2345677899999984211 126888887754322 455554433332
Q ss_pred HHHHhhhC
Q 000916 362 DRFSQYFG 369 (1225)
Q Consensus 362 ~~Fs~yF~ 369 (1225)
..|..+|.
T Consensus 166 ~~~~~~ld 173 (366)
T COG1474 166 DKFLDYLD 173 (366)
T ss_pred HHHHHHhh
Confidence 33455554
No 322
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.34 E-value=0.13 Score=45.35 Aligned_cols=18 Identities=44% Similarity=0.768 Sum_probs=15.9
Q ss_pred CCeEEEEccCCCchhchH
Q 000916 204 NQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQv 221 (1225)
+.+++|+|++||||||.+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 358999999999999876
No 323
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.33 E-value=0.59 Score=59.23 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=20.8
Q ss_pred HHHHHHcCC---eEEEEccCCCchhchHHHHH
Q 000916 197 ITSTVDSNQ---VVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 197 Il~aI~~~~---VvII~GeTGsGKTTQvPq~I 225 (1225)
+..++.+++ .+|++|+.|+||||..=.+.
T Consensus 28 L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 28 LRNAIAEGRVAHAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHHHHHH
Confidence 445555554 45899999999999775443
No 324
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.31 E-value=1.5 Score=56.20 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=73.9
Q ss_pred CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeeccc------CC
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESK------GG 278 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~------~s 278 (1225)
.+++|+|.=|=|||..+-..|+-... .....+|+||-|+..++-++.+.. .+.-+.+|-. +.|-.+.. .+
T Consensus 232 ~~~vlTAdRGRGKSA~lGi~~~~~~~-~~~~~~iiVTAP~~~nv~~Lf~fa-~~~l~~lg~~--~~v~~d~~g~~~~~~~ 307 (758)
T COG1444 232 RALVLTADRGRGKSAALGIALAAAAR-LAGSVRIIVTAPTPANVQTLFEFA-GKGLEFLGYK--RKVAPDALGEIREVSG 307 (758)
T ss_pred ceEEEEcCCCCcHhHHHhHHHHHHHH-hcCCceEEEeCCCHHHHHHHHHHH-HHhHHHhCCc--cccccccccceeeecC
Confidence 39999999999999999877732221 122579999999999888888744 4433444422 11211111 11
Q ss_pred CCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEccc
Q 000916 279 KHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSAT 358 (1225)
Q Consensus 279 ~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSAT 358 (1225)
+.-+|-|.+|-... ..-+.||||||= .+-. -+|+.++.. .+-|+||.|
T Consensus 308 ~~~~i~y~~P~~a~-----------------------~~~DllvVDEAA--aIpl----plL~~l~~~---~~rv~~sTT 355 (758)
T COG1444 308 DGFRIEYVPPDDAQ-----------------------EEADLLVVDEAA--AIPL----PLLHKLLRR---FPRVLFSTT 355 (758)
T ss_pred CceeEEeeCcchhc-----------------------ccCCEEEEehhh--cCCh----HHHHHHHhh---cCceEEEee
Confidence 22346666654332 114679999995 3333 344555443 367899999
Q ss_pred cc
Q 000916 359 LD 360 (1225)
Q Consensus 359 ld 360 (1225)
+.
T Consensus 356 Ih 357 (758)
T COG1444 356 IH 357 (758)
T ss_pred ec
Confidence 94
No 325
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.15 E-value=1.2 Score=58.89 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=20.1
Q ss_pred eEEEEccCCCchhchHHHHHHHHHhcc
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIWSK 232 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~~~ 232 (1225)
++++.|+||+|||+.. ..|.+..+..
T Consensus 600 ~~Lf~Gp~G~GKT~lA-~aLa~~l~~~ 625 (857)
T PRK10865 600 SFLFLGPTGVGKTELC-KALANFMFDS 625 (857)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhhcC
Confidence 6889999999999865 5566665543
No 326
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=91.09 E-value=0.098 Score=48.51 Aligned_cols=56 Identities=32% Similarity=0.463 Sum_probs=50.3
Q ss_pred CCccceeeccCCccchhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHH
Q 000916 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517 (1225)
Q Consensus 462 g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~ 517 (1225)
|.||+|.++..|..+.+..|+..|++++.+|.+|+|++.+|...++.+++++|-++
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 81 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEH 81 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 77899999999999999999999999999999999999999988888888777554
No 327
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.84 E-value=1.2 Score=55.39 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=25.3
Q ss_pred cccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEE
Q 000916 313 DDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILM 355 (1225)
Q Consensus 313 ~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILM 355 (1225)
+......+|||||+|.- ..+.+-.+|+.+-.-.+...+|+.
T Consensus 112 p~~~~~kVVIIDEad~l--s~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 112 PLRGGRKVYILDEAHMM--SKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred cccCCCeEEEEECcccc--CHHHHHHHHHHHHhCCCCEEEEEE
Confidence 35678899999999943 344555556654333344455554
No 328
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=90.84 E-value=1.3 Score=57.72 Aligned_cols=103 Identities=22% Similarity=0.236 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCHHHHHHHhcCCCCCC-ceEEEecchhccccCCCC--
Q 000916 560 EDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGC-RKIILSTNIAETAITIDD-- 636 (1225)
Q Consensus 560 ~~G~ILVFLpG~~eI~~l~~~L~~~~~~~~~~~~~vl~LHs~l~~~eQ~~vF~~~p~g~-rKIILATNIAEtSITI~d-- 636 (1225)
.+-+|||-..+.+.-+.+...|...+. ..-.|.+.-...|- .|... .|. -.|.||||.|-+|-+|.=
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~gi-------~h~vLNak~~~~Ea-~iia~--AG~~g~VTIATNmAGRGTDIkl~~ 636 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQNRI-------EHTVLNAKNHAQEA-EIIAG--AGKLGAVTVATNMAGRGTDIKLDE 636 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCC-------cceecccchhhhHH-HHHHh--cCCCCcEEEeeccccCCcccccCc
Confidence 456899999999999999998876542 22223333112222 33332 232 469999999999987742
Q ss_pred ------eEEEEeCCCcccccccCCCCcccccccccCHhhHHhhcCccCCCcc-eEEEEecC
Q 000916 637 ------VVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQA-GICYHLYS 690 (1225)
Q Consensus 637 ------V~~VIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~~-G~CyrLys 690 (1225)
=-+||-+.+ .-|+--=.|=+|||||.+. |.|--+.|
T Consensus 637 ~v~~~GGLhVIgTer------------------~es~Rid~Ql~GRagRQGdpGss~f~lS 679 (970)
T PRK12899 637 EAVAVGGLYVIGTSR------------------HQSRRIDRQLRGRCARLGDPGAAKFFLS 679 (970)
T ss_pred hHHhcCCcEEEeecc------------------CchHHHHHHHhcccccCCCCCceeEEEE
Confidence 235554444 3344445688999999875 88755544
No 329
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.84 E-value=0.86 Score=56.38 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=18.2
Q ss_pred HHHHHHHcCC---eEEEEccCCCchhchH
Q 000916 196 VITSTVDSNQ---VVLISGETGCGKTTQV 221 (1225)
Q Consensus 196 eIl~aI~~~~---VvII~GeTGsGKTTQv 221 (1225)
.+.++|.+++ ..+++|+.|+||||..
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTtlA 55 (486)
T PRK14953 27 ILKNAVKLQRVSHAYIFAGPRGTGKTTIA 55 (486)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3455555543 4578999999997654
No 330
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.81 E-value=0.54 Score=54.25 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=14.9
Q ss_pred CeEEEEccCCCchhchHH
Q 000916 205 QVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvP 222 (1225)
+.+++.|++|||||+..-
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 568999999999996543
No 331
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.68 E-value=0.29 Score=53.10 Aligned_cols=34 Identities=32% Similarity=0.584 Sum_probs=21.9
Q ss_pred eEEEEccCCCchhchHHHHHHHHHhccCCccEEEEe
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCT 241 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicT 241 (1225)
.++|+|+|||||||.+-. ++..... ....+|++.
T Consensus 3 lilI~GptGSGKTTll~~-ll~~~~~-~~~~~i~t~ 36 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAA-MIDYINK-NKTHHILTI 36 (198)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhhh-cCCcEEEEE
Confidence 588999999999999844 4443322 123455543
No 332
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.63 E-value=0.36 Score=52.80 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=20.0
Q ss_pred HcCCeEEEEccCCCchhchHHHHHH
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFLL 226 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~IL 226 (1225)
.++++++|.|+.||||||.+=+...
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999997655433
No 333
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.63 E-value=1.2 Score=52.98 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=29.9
Q ss_pred cccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccc
Q 000916 313 DDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATL 359 (1225)
Q Consensus 313 ~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATl 359 (1225)
+...++.+|||||+|. ++....-.+||-+-.-.++..+||+|...
T Consensus 137 ~~~~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 137 AAEGGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cccCCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 3557889999999995 45666666777664333455666665544
No 334
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.59 E-value=0.46 Score=52.36 Aligned_cols=43 Identities=40% Similarity=0.498 Sum_probs=32.7
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecc
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQP 243 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQP 243 (1225)
|-.+.+++|.|++|||||+..-||+++.+...+.+|-.+.+.-
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 3468999999999999999999999988765356665555543
No 335
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.55 E-value=0.3 Score=55.57 Aligned_cols=30 Identities=30% Similarity=0.593 Sum_probs=22.3
Q ss_pred HHHHHHH-cCCeEEEEccCCCchhchHHHHH
Q 000916 196 VITSTVD-SNQVVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 196 eIl~aI~-~~~VvII~GeTGsGKTTQvPq~I 225 (1225)
.+.+++. .+..++|+|+|||||||.+-.++
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~all 101 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYSAL 101 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHHHH
Confidence 3455555 35689999999999999985443
No 336
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.47 E-value=1.5 Score=49.14 Aligned_cols=62 Identities=21% Similarity=0.398 Sum_probs=43.0
Q ss_pred HHHHHHcCC-eEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCC
Q 000916 197 ITSTVDSNQ-VVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGE 261 (1225)
Q Consensus 197 Il~aI~~~~-VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge 261 (1225)
+-.+|..+| ++.|+|+-|||||+..= .+++.. ..+..|-|++-- +.++.-.+.+++..+...
T Consensus 43 l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~-~~d~~~~v~i~~-~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 43 LHAAIADGQGILAVTGEVGSGKTVLRR-ALLASL-NEDQVAVVVIDK-PTLSDATLLEAIVADLES 105 (269)
T ss_pred HHHHHhcCCceEEEEecCCCchhHHHH-HHHHhc-CCCceEEEEecC-cchhHHHHHHHHHHHhcc
Confidence 556788888 99999999999997665 455443 334444444444 457777888888777643
No 337
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=90.46 E-value=1.4 Score=57.94 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=78.6
Q ss_pred HcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHH----HHH-hCCcc-CCeEEEEEeecc
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERI----SVE-RGENI-GDNIGYKIRLES 275 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRV----a~E-rge~l-G~~VGY~IR~es 275 (1225)
.++-.+-|.-+||+|||-..-..|++-...- ...++|++.|+...--.+..-+ +++ +.+.. |..+-|.+--..
T Consensus 57 ~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~-~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~ 135 (986)
T PRK15483 57 DDKANIDIKMETGTGKTYVYTRLMYELHQKY-GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAG 135 (986)
T ss_pred CccceEEEEeCCCCCHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecC
Confidence 3456788899999999976666666554322 3367888899854333333222 111 11122 333444332111
Q ss_pred c---------CC------------C-CccEEEEccHHHHHHHHhcCccccc---ccCCCccccccCCc-cEEEecccccc
Q 000916 276 K---------GG------------K-HSSIVFCTNGVLLRLLVSQGVSRLK---EASNKPAKDDVSAL-THIIVDEIHER 329 (1225)
Q Consensus 276 ~---------~s------------~-~t~I~f~T~GvLLr~L~~~~~~~~~---~~~~~~~~~~L~~~-shVIvDEvHER 329 (1225)
+ .+ . +-.|+++|.+.|-...+..... +. .....+++ .+... -+|||||.|.-
T Consensus 136 k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~-D~~l~~g~~~p~~-~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 136 DKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDY-DQTLLGGFTSPVD-ALAATRPVVIIDEPHRF 213 (986)
T ss_pred cccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchh-hhhhccCCCChHH-HHHhCCCEEEEECCCCC
Confidence 1 11 1 3589999999986543211000 00 00112332 33333 48999999953
Q ss_pred ccchhHHHHHHHHhCcCCCCceEEEEcccccH
Q 000916 330 DRYSDFMLAIIRDMLPSYPHLRLILMSATLDA 361 (1225)
Q Consensus 330 ~~~tD~LL~lLk~ll~~~~~LKlILMSATld~ 361 (1225)
.-.... .+.+...+|.. ++..|||.+-
T Consensus 214 ~~~~k~----~~~i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 214 PRDNKF----YQAIEALKPQM-IIRFGATFPD 240 (986)
T ss_pred CcchHH----HHHHHhcCccc-EEEEeeecCC
Confidence 221111 13333445544 6669999953
No 338
>PTZ00293 thymidine kinase; Provisional
Probab=90.39 E-value=0.45 Score=52.22 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=29.0
Q ss_pred cCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecch
Q 000916 203 SNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPR 244 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPR 244 (1225)
.+.+.+|.|+-+|||||.+-+-+...... + -++++..|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~a-g--~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYS-E--KKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHc-C--CceEEEEec
Confidence 46788999999999999998877655443 2 356666664
No 339
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.39 E-value=0.3 Score=57.61 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=32.3
Q ss_pred HHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchH
Q 000916 197 ITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRR 245 (1225)
Q Consensus 197 Il~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRR 245 (1225)
+-.+++.+..++|+|+|||||||.+-- |+... ....+|+..+...
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~a-Ll~~i---~~~~rivtiEd~~ 199 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKT-LISAI---PPQERLITIEDTL 199 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHH-HHccc---CCCCCEEEECCCc
Confidence 445678899999999999999998844 34332 2235777777654
No 340
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.37 E-value=2.2 Score=53.72 Aligned_cols=149 Identities=18% Similarity=0.207 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCC----c-----
Q 000916 192 SFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGE----N----- 262 (1225)
Q Consensus 192 ~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge----~----- 262 (1225)
.+-+.+++..+ .+..++.-+==+|||+.+- .++-.+...-.+.+|++|-|++-.+..+.++|..-... .
T Consensus 243 ~~s~~~~~~fk-qk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~v 320 (738)
T PHA03368 243 LFSDAAVRHFR-QRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHV 320 (738)
T ss_pred cccHHHHHHhh-ccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeee
Confidence 34455666554 4556667778999999766 33333333333579999999999999999998763211 0
Q ss_pred cCCeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHH
Q 000916 263 IGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRD 342 (1225)
Q Consensus 263 lG~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ 342 (1225)
-|+. +.+.+.+ +..+.|.|.+.. +.+ ..+. .+++.+||||+++ +..+.+-.+|--
T Consensus 321 kGe~--I~i~f~n--G~kstI~FaSar-------ntN----------siRG--qtfDLLIVDEAqF--Ik~~al~~ilp~ 375 (738)
T PHA03368 321 KGET--ISFSFPD--GSRSTIVFASSH-------NTN----------GIRG--QDFNLLFVDEANF--IRPDAVQTIMGF 375 (738)
T ss_pred cCcE--EEEEecC--CCccEEEEEecc-------CCC----------CccC--CcccEEEEechhh--CCHHHHHHHHHH
Confidence 1221 1223332 223467887431 110 0001 2678999999997 445777777744
Q ss_pred hCcCCCCceEEEEcccccHHHHHhhhC
Q 000916 343 MLPSYPHLRLILMSATLDADRFSQYFG 369 (1225)
Q Consensus 343 ll~~~~~LKlILMSATld~~~Fs~yF~ 369 (1225)
+... +-|+|.+|-|-..+.-..|..
T Consensus 376 l~~~--n~k~I~ISS~Ns~~~sTSFL~ 400 (738)
T PHA03368 376 LNQT--NCKIIFVSSTNTGKASTSFLY 400 (738)
T ss_pred Hhcc--CccEEEEecCCCCccchHHHH
Confidence 4443 789999999986665555543
No 341
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.30 E-value=1.5 Score=56.39 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=20.5
Q ss_pred HHHHHHHcCC---eEEEEccCCCchhchHHHH
Q 000916 196 VITSTVDSNQ---VVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 196 eIl~aI~~~~---VvII~GeTGsGKTTQvPq~ 224 (1225)
.+..+|..++ ..+++|+.|+||||..=.+
T Consensus 29 ~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 29 TLKNIIKSNKISHAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence 3555565554 4689999999999876443
No 342
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.29 E-value=1.3 Score=55.28 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=26.4
Q ss_pred cccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEc
Q 000916 313 DDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMS 356 (1225)
Q Consensus 313 ~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMS 356 (1225)
|....+.+|||||||.- ..+..-.+||-+-.-.+..++||.+
T Consensus 113 P~~~~~KVvIIDEad~L--t~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 113 PSMARFKIFIIDEVHML--TKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cccCCeEEEEEECcccC--CHHHHHHHHHHHhhcCCceEEEEEE
Confidence 45678999999999964 3444444555443333456666644
No 343
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.25 E-value=0.66 Score=50.92 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=26.0
Q ss_pred HHHcCCeEEEEccCCCchhchHHHHHHHHHh
Q 000916 200 TVDSNQVVLISGETGCGKTTQVPQFLLEHIW 230 (1225)
Q Consensus 200 aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~ 230 (1225)
-+..++++.|.|++|||||+..-|++.....
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~ 45 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQL 45 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhc
Confidence 3556899999999999999999888877543
No 344
>PLN03025 replication factor C subunit; Provisional
Probab=90.17 E-value=1.6 Score=50.94 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=16.1
Q ss_pred CeEEEEccCCCchhchHHHH
Q 000916 205 QVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ 224 (1225)
..+++.|++||||||.+=.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~l 54 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILAL 54 (319)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45889999999999876443
No 345
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.16 E-value=1.1 Score=58.55 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.2
Q ss_pred cCCeEEEEccCCCchhchHH
Q 000916 203 SNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvP 222 (1225)
.+.++++.|++|||||+..-
T Consensus 346 ~~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999996553
No 346
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.15 E-value=1.2 Score=56.36 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=21.3
Q ss_pred HHHHHHHHcCC---eEEEEccCCCchhchHHHH
Q 000916 195 DVITSTVDSNQ---VVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 195 ~eIl~aI~~~~---VvII~GeTGsGKTTQvPq~ 224 (1225)
+.+..+|.+++ ..+++|+.|+||||..=.+
T Consensus 26 ~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~l 58 (576)
T PRK14965 26 RTLQNAIDTGRVAHAFLFTGARGVGKTSTARIL 58 (576)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 34455565554 4689999999999977443
No 347
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=90.14 E-value=1.2 Score=58.50 Aligned_cols=117 Identities=20% Similarity=0.144 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhC---CccCCeEEE
Q 000916 193 FKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERG---ENIGDNIGY 269 (1225)
Q Consensus 193 ~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erg---e~lG~~VGY 269 (1225)
|--+++-.|.=|+=-|.--.||=|||...-.+++=.++. |.++.|+-+-. .+|+|=|+.+| +-+|-+||.
T Consensus 171 yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~-GkgVHvVTVND------YLA~RDaewmgply~fLGLsvg~ 243 (1112)
T PRK12901 171 YDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT-GNGVHVVTVND------YLAKRDSEWMGPLYEFHGLSVDC 243 (1112)
T ss_pred cchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc-CCCcEEEEech------hhhhccHHHHHHHHHHhCCceee
Confidence 334577777777777888899999998644443323332 44465654433 57777777776 457999996
Q ss_pred EEeec--c---cCCCCccEEEEccHHH-----HHHHHhcCcccccccCCCccccccCCccEEEecccc
Q 000916 270 KIRLE--S---KGGKHSSIVFCTNGVL-----LRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH 327 (1225)
Q Consensus 270 ~IR~e--s---~~s~~t~I~f~T~GvL-----Lr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvH 327 (1225)
..... . +..=.+.|+|+|+.=| -..|.... -+....++.+.|||||+
T Consensus 244 i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~-----------~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 244 IDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSP-----------EDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred cCCCCCCHHHHHHhCCCcceecCCCccccccchhccccch-----------HhhhCcCCceeEeechh
Confidence 44311 1 1123678999998643 22222211 11356788999999998
No 348
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.04 E-value=1.8 Score=49.54 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=21.0
Q ss_pred HHHHHHHHc-C--CeEEEEccCCCchhchHHHH
Q 000916 195 DVITSTVDS-N--QVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 195 ~eIl~aI~~-~--~VvII~GeTGsGKTTQvPq~ 224 (1225)
+.++..+.. + +.++|.|+|||||||.+-..
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l 131 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDL 131 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHH
Confidence 344444443 3 57899999999999977443
No 349
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=89.89 E-value=0.73 Score=57.01 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=55.6
Q ss_pred CCC-ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHH
Q 000916 187 KLP-ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISV 257 (1225)
Q Consensus 187 ~LP-i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~ 257 (1225)
.|| ....|...++++.++.+.+|.|++|+|||.-.--.++.-.-. ...+|+|..|.-||.-++|+.+-+
T Consensus 407 ~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred CchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHh
Confidence 344 566788899999999999999999999998766666544322 346899999999999999998843
No 350
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.87 E-value=0.94 Score=52.33 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=28.0
Q ss_pred ccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEc
Q 000916 314 DVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMS 356 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMS 356 (1225)
...++.+||||||+- ++.|..=+++|-+-...++..+||.+
T Consensus 106 ~~~~~kviiidead~--mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 106 LEGGYKVVIIDEADK--LTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCCceEEEeCcHHH--HhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 357889999999994 44566666666665555556666554
No 351
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=89.86 E-value=3.8 Score=57.59 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHHc--CCeEEEEccCCCchhchHHHHHHHHHh--ccCCccEEEEecchHHHHHHH
Q 000916 189 PISSFKDVITSTVDS--NQVVLISGETGCGKTTQVPQFLLEHIW--SKGETCKIVCTQPRRISATSV 251 (1225)
Q Consensus 189 Pi~~~r~eIl~aI~~--~~VvII~GeTGsGKTTQvPq~ILe~~~--~~~~~~~IicTQPRRiaAisv 251 (1225)
.....|.+.+..+.. +++++|+|..|+||||.+=.. .+.+. ......+|+..-|+--||..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v-~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAV-MSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHH-HHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 345566666666655 579999999999999987433 22221 122234688888987766433
No 352
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=89.84 E-value=0.56 Score=52.37 Aligned_cols=51 Identities=29% Similarity=0.445 Sum_probs=37.1
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERI 255 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRV 255 (1225)
+..+.+++|.|++||||||..-||+++.+ .+|..|-.+.++= .+-++.+++
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~ee---~~~~i~~~~ 68 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALEE---HPVQVRRNM 68 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEeeC---CHHHHHHHH
Confidence 44689999999999999999999999887 4466564444432 334555554
No 353
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.79 E-value=0.55 Score=48.69 Aligned_cols=22 Identities=27% Similarity=0.592 Sum_probs=19.0
Q ss_pred HHcCCeEEEEccCCCchhchHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvP 222 (1225)
|..++++.|.|++||||||.+=
T Consensus 22 i~~g~~~~i~G~nGsGKStll~ 43 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLR 43 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998653
No 354
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.65 E-value=1.7 Score=51.65 Aligned_cols=29 Identities=31% Similarity=0.546 Sum_probs=21.3
Q ss_pred HHHHHHHcC---CeEEEEccCCCchhchHHHH
Q 000916 196 VITSTVDSN---QVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 196 eIl~aI~~~---~VvII~GeTGsGKTTQvPq~ 224 (1225)
.+.+.+.++ ..+++.|+.|+||||..-.+
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 455555554 37889999999999876554
No 355
>PHA00729 NTP-binding motif containing protein
Probab=89.53 E-value=0.69 Score=51.33 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.7
Q ss_pred eEEEEccCCCchhchH
Q 000916 206 VVLISGETGCGKTTQV 221 (1225)
Q Consensus 206 VvII~GeTGsGKTTQv 221 (1225)
.++|+|.+|+||||..
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999644
No 356
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=89.51 E-value=0.79 Score=56.09 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=14.6
Q ss_pred CeEEEEccCCCchhchHH
Q 000916 205 QVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvP 222 (1225)
..++|.|++|+|||+..-
T Consensus 142 npl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 457899999999997553
No 357
>PHA00149 DNA encapsidation protein
Probab=89.49 E-value=2 Score=48.81 Aligned_cols=145 Identities=23% Similarity=0.352 Sum_probs=90.3
Q ss_pred EEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCcc--------------CCeEEEEEee
Q 000916 208 LISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENI--------------GDNIGYKIRL 273 (1225)
Q Consensus 208 II~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l--------------G~~VGY~IR~ 273 (1225)
.|.|.-|-|||-.+--+++++.+.+|. +.|...--..---....-++.|.-+.. |..+||-+.+
T Consensus 21 fviG~RgiGKTya~k~~~~k~~i~kge--qfiYLRr~k~El~~k~~Ff~d~~~~~~~~~F~Vkg~ki~~~~k~igy~i~L 98 (331)
T PHA00149 21 FVIGARGIGKTYALKKYLIKRFIKKGE--QFIYLRRYKSELKKKSKFFADIAQEFPNTEFEVKGRKIYIKGKLIGYAIPL 98 (331)
T ss_pred EEEeccccchhhHHHHHHHHHHHhcCc--EEEEEEecchhhhhhhhhhHHHHHhCCCCceEEEccEEEEcCeEEEEEEeh
Confidence 456999999999999999999887765 444432211111113344555553321 4445554432
Q ss_pred cccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccc-cc------cchhHHHHHHHHhCcC
Q 000916 274 ESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE-RD------RYSDFMLAIIRDMLPS 346 (1225)
Q Consensus 274 es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE-R~------~~tD~LL~lLk~ll~~ 346 (1225)
.. ...+.+ ....+|+||+.||+-- ++ =+.+.||-++-.+-+.
T Consensus 99 S~----------------~q~~Ks---------------~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~ 147 (331)
T PHA00149 99 ST----------------WQALKS---------------SAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRA 147 (331)
T ss_pred hh----------------HHhhcc---------------cCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHh
Confidence 11 222322 2678999999999974 22 1467788888888888
Q ss_pred CCCceEEEEcccc-cHHHHHhhhCCCCeEecCCcccceeEEEe
Q 000916 347 YPHLRLILMSATL-DADRFSQYFGGCPVIQVPGFTYPVKSFYL 388 (1225)
Q Consensus 347 ~~~LKlILMSATl-d~~~Fs~yF~~~pvi~I~gr~~pV~~~yL 388 (1225)
|-+.|++++|-.. ..+-+..||+=.|- ++.+|-++..++
T Consensus 148 Re~vr~~~lsNa~~~~NPyF~yfg~~~d---~~k~f~~~~~~l 187 (331)
T PHA00149 148 RERVRCICLSNAVSIVNPYFLYFGLYPD---INKRFNVYDEIL 187 (331)
T ss_pred hcCeEEEEEcCcccccchhhheeccccC---CCcceeecccEE
Confidence 8999999999766 45667777764332 234455544443
No 358
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=89.47 E-value=0.38 Score=54.23 Aligned_cols=29 Identities=31% Similarity=0.327 Sum_probs=23.4
Q ss_pred HHHcCCeEEEEccCCCchhchHHHHHHHHH
Q 000916 200 TVDSNQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 200 aI~~~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
.|..+|.++|.|+.||||||.+ +.|+...
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLl-r~I~n~l 40 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLL-QSIANAI 40 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHH-HHHHhcc
Confidence 4578999999999999999965 5566554
No 359
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.41 E-value=0.63 Score=58.54 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=13.8
Q ss_pred CeEEEEccCCCchhchH
Q 000916 205 QVVLISGETGCGKTTQV 221 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQv 221 (1225)
..++|.|++|||||..+
T Consensus 315 NpL~LyG~sGsGKTHLL 331 (617)
T PRK14086 315 NPLFIYGESGLGKTHLL 331 (617)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45889999999999443
No 360
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.38 E-value=0.25 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=18.1
Q ss_pred EEEEccCCCchhchHHHHHHHH
Q 000916 207 VLISGETGCGKTTQVPQFLLEH 228 (1225)
Q Consensus 207 vII~GeTGsGKTTQvPq~ILe~ 228 (1225)
++|.|..||||||.+-..+-+.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999887766554
No 361
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=89.34 E-value=0.77 Score=48.72 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=19.2
Q ss_pred HHcCCeEEEEccCCCchhchHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvP 222 (1225)
|..++++.|.|+.||||||.+=
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~ 46 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQ 46 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5679999999999999998653
No 362
>PRK13764 ATPase; Provisional
Probab=89.29 E-value=0.5 Score=59.44 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=24.2
Q ss_pred HHHHH-HcCCeEEEEccCCCchhchHHHHHHHHHh
Q 000916 197 ITSTV-DSNQVVLISGETGCGKTTQVPQFLLEHIW 230 (1225)
Q Consensus 197 Il~aI-~~~~VvII~GeTGsGKTTQvPq~ILe~~~ 230 (1225)
+++.+ ..+..++|+|+|||||||.+ +-|++.+.
T Consensus 249 l~~~l~~~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 249 LKERLEERAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 34443 45778999999999999987 55666554
No 363
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.24 E-value=1.1 Score=55.40 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=17.4
Q ss_pred cCCeEEEEccCCCchhchHHHHHHHH
Q 000916 203 SNQVVLISGETGCGKTTQVPQFLLEH 228 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ILe~ 228 (1225)
..+-+++.|++|||||+. .+.+...
T Consensus 215 ~p~GILLyGPPGTGKT~L-AKAlA~e 239 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLI-AKAVANS 239 (512)
T ss_pred CCcceEEECCCCCcHHHH-HHHHHHh
Confidence 345689999999999963 3444433
No 364
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=89.17 E-value=4.9 Score=46.38 Aligned_cols=134 Identities=22% Similarity=0.339 Sum_probs=81.2
Q ss_pred HHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEe-----cchHHHHHHHHHHHHHHhCC-c--------
Q 000916 197 ITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCT-----QPRRISATSVAERISVERGE-N-------- 262 (1225)
Q Consensus 197 Il~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicT-----QPRRiaAisvAeRVa~Erge-~-------- 262 (1225)
+++. ++-.-.|.|.-|-|||-.+--.++++.+..|. +.|+. |--++ +-.--.-|++|.-. .
T Consensus 12 ~lsy--~~~~~~viG~RgiGKtya~k~~~i~df~~~G~--qfiyLRr~k~E~~~~-~n~~f~dv~~~f~~~~F~vk~~k~ 86 (333)
T PF05894_consen 12 MLSY--DRILNFVIGARGIGKTYALKKKLIKDFIEYGE--QFIYLRRYKTELDKM-KNKFFNDVQQEFPNNEFEVKGNKI 86 (333)
T ss_pred Hhhh--cceEEEEEecccccchhHHHHHHHHHHHhcCC--EEEEEEecchHHHHH-hhHHHHHHHHhCCCCcEEEEccEE
Confidence 4444 44444577999999999999999999987765 33333 32233 22222335555421 1
Q ss_pred --cCCeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccc-cccc------ch
Q 000916 263 --IGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH-ERDR------YS 333 (1225)
Q Consensus 263 --lG~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvH-ER~~------~t 333 (1225)
-|+.+||-+.+..- ..+.+ ....+|.+||.||+- |++- .-
T Consensus 87 ~idgk~~g~~~~Ls~~----------------q~~Ks---------------~~Yp~V~~IvfDEfi~ek~~~~y~~nEv 135 (333)
T PF05894_consen 87 YIDGKLIGYFIPLSGW----------------QKLKS---------------SSYPNVYTIVFDEFIIEKSNWRYIPNEV 135 (333)
T ss_pred EECCeEEEEEEecchh----------------hhccc---------------CCCCcEEEEEEEEEEecCcccCCCchHH
Confidence 13334444332211 11111 267899999999998 5443 24
Q ss_pred hHHHHHHHHhCcCCCCceEEEEcccccHHHHHhhh
Q 000916 334 DFMLAIIRDMLPSYPHLRLILMSATLDADRFSQYF 368 (1225)
Q Consensus 334 D~LL~lLk~ll~~~~~LKlILMSATld~~~Fs~yF 368 (1225)
+.|+.++-.+-+.+.++|++++|-.. .-+.-||
T Consensus 136 ~~Lln~i~TV~R~rd~i~vicl~Nav--s~~NPyF 168 (333)
T PF05894_consen 136 KALLNFIDTVFRFRDRIRVICLSNAV--SIYNPYF 168 (333)
T ss_pred HHHHHHHHHHhhcccceEEEEEeccc--cccChHH
Confidence 56777777777888999999999733 3344444
No 365
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.15 E-value=0.55 Score=53.86 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCcccccccCCCccccccCCccEEEeccccc
Q 000916 289 GVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE 328 (1225)
Q Consensus 289 GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHE 328 (1225)
-+|+|.|+.-.. |-.-..-..|.|||++.
T Consensus 145 NillkLlqaady-----------dV~rAerGIIyIDEIDK 173 (408)
T COG1219 145 NILLKLLQAADY-----------DVERAERGIIYIDEIDK 173 (408)
T ss_pred HHHHHHHHHccc-----------CHHHHhCCeEEEechhh
Confidence 478999986532 23445567899999994
No 366
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.13 E-value=0.37 Score=53.54 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=32.2
Q ss_pred HHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCcc
Q 000916 196 VITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETC 236 (1225)
Q Consensus 196 eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~ 236 (1225)
+++.-+..+++++|+|+||+||||..-|+++..+...+..+
T Consensus 5 ~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~v 45 (242)
T cd00984 5 NLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPV 45 (242)
T ss_pred hhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCce
Confidence 34445678899999999999999999999988776534433
No 367
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.10 E-value=0.46 Score=56.11 Aligned_cols=44 Identities=25% Similarity=0.513 Sum_probs=27.7
Q ss_pred HHHHHHH-cCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEe
Q 000916 196 VITSTVD-SNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCT 241 (1225)
Q Consensus 196 eIl~aI~-~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicT 241 (1225)
.+.+.+. ....++|+|+|||||||.+-. ++.... .....+|+..
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~a-l~~~i~-~~~~~~i~ti 157 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLAS-MIDYIN-KNAAGHIITI 157 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHH-HHHhhC-cCCCCEEEEE
Confidence 3444443 467899999999999999844 444432 2223455544
No 368
>COG3910 Predicted ATPase [General function prediction only]
Probab=89.00 E-value=0.26 Score=52.70 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=29.0
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHH
Q 000916 186 SKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 186 ~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ 224 (1225)
-+||+..+.++-|+ -.-+|++|+|+.||||||.+--.
T Consensus 21 ~slPa~r~l~~~Le--F~apIT~i~GENGsGKSTLLEai 57 (233)
T COG3910 21 FSLPAFRHLEERLE--FRAPITFITGENGSGKSTLLEAI 57 (233)
T ss_pred ccchHHHhhhhhcc--ccCceEEEEcCCCccHHHHHHHH
Confidence 47888888887332 46789999999999999876443
No 369
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.96 E-value=2.7 Score=49.50 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=18.1
Q ss_pred HHHHHHcC---CeEEEEccCCCchhchH
Q 000916 197 ITSTVDSN---QVVLISGETGCGKTTQV 221 (1225)
Q Consensus 197 Il~aI~~~---~VvII~GeTGsGKTTQv 221 (1225)
+.+++.++ ..+++.|+.|+||||..
T Consensus 26 l~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 26 LKNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 44444444 46789999999999765
No 370
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.94 E-value=5 Score=48.26 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=85.9
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccE
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSI 283 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I 283 (1225)
-.|++.+|=-||||||-.-..-.- +-.++..+-++|+-..|-||+.--+.+|+..+..+ |.. +...++ +
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~-lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~-----f~~--~~~~~P---v 168 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKY-LKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF-----FGS--GTEKDP---V 168 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHH-HHHcCCceEEEecccCChHHHHHHHHHHHHcCCce-----ecC--CCCCCH---H
Confidence 357788999999999987554321 11256677899999999999998888876655432 222 111111 1
Q ss_pred EEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhC-cCCCCceEEEEcccc--c
Q 000916 284 VFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDML-PSYPHLRLILMSATL--D 360 (1225)
Q Consensus 284 ~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll-~~~~~LKlILMSATl--d 360 (1225)
- +.-+-|.. .....+++||||=+-...++.+++ .-++.+- ..+|+=-+.++=|++ +
T Consensus 169 ~-----Iak~al~~---------------ak~~~~DvvIvDTAGRl~ide~Lm-~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 169 E-----IAKAALEK---------------AKEEGYDVVIVDTAGRLHIDEELM-DELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred H-----HHHHHHHH---------------HHHcCCCEEEEeCCCcccccHHHH-HHHHHHHhhcCCCeEEEEEecccchH
Confidence 1 22222322 145678999999999766666554 4444443 346887788888888 6
Q ss_pred HHHHHhhhC
Q 000916 361 ADRFSQYFG 369 (1225)
Q Consensus 361 ~~~Fs~yF~ 369 (1225)
+..-++-|+
T Consensus 228 A~~~A~aF~ 236 (451)
T COG0541 228 AVNTAKAFN 236 (451)
T ss_pred HHHHHHHHh
Confidence 666666665
No 371
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.91 E-value=0.22 Score=54.43 Aligned_cols=22 Identities=41% Similarity=0.741 Sum_probs=19.6
Q ss_pred HHHcCCeEEEEccCCCchhchH
Q 000916 200 TVDSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 200 aI~~~~VvII~GeTGsGKTTQv 221 (1225)
.|..+.||+|+|+.||||||.+
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHH
Confidence 3678999999999999999876
No 372
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.86 E-value=1.3 Score=56.31 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=20.5
Q ss_pred HHHHHHcCCe---EEEEccCCCchhchHHH
Q 000916 197 ITSTVDSNQV---VLISGETGCGKTTQVPQ 223 (1225)
Q Consensus 197 Il~aI~~~~V---vII~GeTGsGKTTQvPq 223 (1225)
+..++.++++ .+++|+.||||||..=.
T Consensus 28 L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 28 IQNSLRMDRVGHGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHH
Confidence 5556766644 88999999999987633
No 373
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.82 E-value=3.1 Score=54.32 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=23.5
Q ss_pred CChHHHHHHHHHHH-----cCCeEEEEccCCCchhchH
Q 000916 189 PISSFKDVITSTVD-----SNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 189 Pi~~~r~eIl~aI~-----~~~VvII~GeTGsGKTTQv 221 (1225)
|+....++|-..+. ....+|+.|++|||||+.+
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 77766665555443 3456788999999999765
No 374
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.77 E-value=0.22 Score=55.57 Aligned_cols=21 Identities=43% Similarity=0.828 Sum_probs=19.3
Q ss_pred HHcCCeEEEEccCCCchhchH
Q 000916 201 VDSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQv 221 (1225)
|..+.+|.|.|++||||||.+
T Consensus 26 v~~GEfvsilGpSGcGKSTLL 46 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLL 46 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 578999999999999999976
No 375
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.76 E-value=2.7 Score=53.62 Aligned_cols=33 Identities=24% Similarity=0.502 Sum_probs=22.7
Q ss_pred HHHHHHHHcC---CeEEEEccCCCchhchHHHHHHHH
Q 000916 195 DVITSTVDSN---QVVLISGETGCGKTTQVPQFLLEH 228 (1225)
Q Consensus 195 ~eIl~aI~~~---~VvII~GeTGsGKTTQvPq~ILe~ 228 (1225)
+.+..+|.++ ...+++|+.|+|||| +-..+...
T Consensus 27 ~~L~~~i~~~~l~hayLf~Gp~G~GKtt-~A~~lAk~ 62 (614)
T PRK14971 27 TTLKNAIATNKLAHAYLFCGPRGVGKTT-CARIFAKT 62 (614)
T ss_pred HHHHHHHHcCCCCeeEEEECCCCCCHHH-HHHHHHHH
Confidence 3466667665 447899999999999 44444333
No 376
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=88.74 E-value=0.76 Score=51.97 Aligned_cols=45 Identities=38% Similarity=0.457 Sum_probs=35.5
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRI 246 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRi 246 (1225)
+..+.+++|+|++|||||+..-||+++.+-. |.+|-.+-+.=...
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~ 64 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPE 64 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHH
Confidence 5678999999999999999999999988754 66665555544333
No 377
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.68 E-value=1.1 Score=53.63 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=28.1
Q ss_pred HHHHH-HHHcCCeEEEEccCCCchhchHHHHHHHHH
Q 000916 195 DVITS-TVDSNQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 195 ~eIl~-aI~~~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
++++. -|..+.+++|.|++|+||||.+-|+..+..
T Consensus 72 D~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 72 DRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred HHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34443 366689999999999999999999987654
No 378
>PF12846 AAA_10: AAA-like domain
Probab=88.66 E-value=0.47 Score=53.87 Aligned_cols=40 Identities=40% Similarity=0.598 Sum_probs=28.7
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHH
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRI 246 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRi 246 (1225)
|..++|.|.|||||||.+=. ++...+..+ ..+++.-|..-
T Consensus 1 n~h~~i~G~tGsGKT~~~~~-l~~~~~~~g--~~~~i~D~~g~ 40 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN-LLEQLIRRG--PRVVIFDPKGD 40 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHcC--CCEEEEcCCch
Confidence 56789999999999998874 445544444 45677677644
No 379
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=88.38 E-value=0.23 Score=58.07 Aligned_cols=21 Identities=33% Similarity=0.858 Sum_probs=19.1
Q ss_pred HHcCCeEEEEccCCCchhchH
Q 000916 201 VDSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQv 221 (1225)
|+++..+++.||+||||||.+
T Consensus 26 i~~Gef~vllGPSGcGKSTlL 46 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLL 46 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 678899999999999999976
No 380
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.35 E-value=0.3 Score=55.63 Aligned_cols=23 Identities=30% Similarity=0.704 Sum_probs=18.8
Q ss_pred cCCeEEEEccCCCchhchHHHHH
Q 000916 203 SNQVVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~I 225 (1225)
.+-.|+|+|+|||||||-+--.|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamI 146 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMI 146 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHH
Confidence 45578899999999999886654
No 381
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=88.29 E-value=0.87 Score=51.66 Aligned_cols=65 Identities=32% Similarity=0.392 Sum_probs=44.8
Q ss_pred CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccEE
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIV 284 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I~ 284 (1225)
+.|++.|++|-||||. |.-+|.|+|.++-.+-|-.+
T Consensus 53 DHvLl~GPPGlGKTTL-------------------------------A~IIA~Emgvn~k~tsGp~l------------- 88 (332)
T COG2255 53 DHVLLFGPPGLGKTTL-------------------------------AHIIANELGVNLKITSGPAL------------- 88 (332)
T ss_pred CeEEeeCCCCCcHHHH-------------------------------HHHHHHHhcCCeEecccccc-------------
Confidence 5689999999999963 44478888876644433222
Q ss_pred EEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccccccc
Q 000916 285 FCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDR 331 (1225)
Q Consensus 285 f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~ 331 (1225)
--+|=|...|. .|..-+++.|||+|.-+.
T Consensus 89 -eK~gDlaaiLt-----------------~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 89 -EKPGDLAAILT-----------------NLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred -cChhhHHHHHh-----------------cCCcCCeEEEehhhhcCh
Confidence 12455666664 577789999999996443
No 382
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=88.28 E-value=0.25 Score=54.70 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.8
Q ss_pred HHcCCeEEEEccCCCchhchHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvP 222 (1225)
|..+.+|.|.|++||||||.+-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLn 49 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLN 49 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5789999999999999999873
No 383
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=88.27 E-value=3 Score=41.47 Aligned_cols=94 Identities=19% Similarity=0.315 Sum_probs=51.1
Q ss_pred EEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccEEEE
Q 000916 207 VLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVFC 286 (1225)
Q Consensus 207 vII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I~f~ 286 (1225)
++++|..|+||||..-.. ...+..++..+-++-+-| -+ +..+.+...+... .+-.-........-.||
T Consensus 2 i~~~GkgG~GKTt~a~~l-a~~l~~~g~~V~~id~D~-----~~----~~~~~~~~~~~~~--~~i~~g~~~~~~~g~~~ 69 (116)
T cd02034 2 IAITGKGGVGKTTIAALL-ARYLAEKGKPVLAIDADP-----DD----LPERLSVEVGEIK--LLLVMGMGRPGGEGCYC 69 (116)
T ss_pred EEEECCCCCCHHHHHHHH-HHHHHHCCCcEEEEECCc-----hh----hHHHHhhccCCce--EEEEecccccCCCCCEe
Confidence 678999999999874333 333333455567788888 22 3333333322111 11111111222334577
Q ss_pred ccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccc
Q 000916 287 TNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEI 326 (1225)
Q Consensus 287 T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEv 326 (1225)
-.+-+++.+... -.+.++.++|+|=.
T Consensus 70 ~~n~~~~~~l~~--------------~~~~~~~~vivDt~ 95 (116)
T cd02034 70 PENALLNALLRH--------------LVLTRDEQVVVDTE 95 (116)
T ss_pred hhhHHHHHHHHH--------------eEccCCCEEEEecH
Confidence 776577766654 13577788998844
No 384
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=88.26 E-value=1.3 Score=57.98 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHH--------cCCeEEEEccCCCchhchH
Q 000916 191 SSFKDVITSTVD--------SNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 191 ~~~r~eIl~aI~--------~~~VvII~GeTGsGKTTQv 221 (1225)
...++.|++.+. .+.++++.|++||||||..
T Consensus 328 ~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 328 ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLG 366 (784)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHH
Confidence 344555665443 3578999999999999644
No 385
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.21 E-value=2 Score=52.39 Aligned_cols=120 Identities=23% Similarity=0.374 Sum_probs=74.1
Q ss_pred eEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccEEE
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIVF 285 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I~f 285 (1225)
-|++.|+.|||||+...+.-++..+ .-|=+..|+.....+=..+++.-
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~F-----PFvKiiSpe~miG~sEsaKc~~i--------------------------- 587 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDF-----PFVKIISPEDMIGLSESAKCAHI--------------------------- 587 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCC-----CeEEEeChHHccCccHHHHHHHH---------------------------
Confidence 3678999999999988887776643 23444556655444433333321
Q ss_pred EccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccccccc--------chhHHHHHHHHhCcCCCC--ceEEEE
Q 000916 286 CTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDR--------YSDFMLAIIRDMLPSYPH--LRLILM 355 (1225)
Q Consensus 286 ~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~--------~tD~LL~lLk~ll~~~~~--LKlILM 355 (1225)
+....| ..=+..++||||++. |-+ ++..+|..|+-+|++.|. -|+++|
T Consensus 588 -------~k~F~D--------------AYkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~ 645 (744)
T KOG0741|consen 588 -------KKIFED--------------AYKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIF 645 (744)
T ss_pred -------HHHHHH--------------hhcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEE
Confidence 112222 123567899999994 544 577888888888887664 488888
Q ss_pred cccccHHHHHh-----hhCCCCeEecCCccc
Q 000916 356 SATLDADRFSQ-----YFGGCPVIQVPGFTY 381 (1225)
Q Consensus 356 SATld~~~Fs~-----yF~~~pvi~I~gr~~ 381 (1225)
--|-..+.+.+ -|. .+++||.-++
T Consensus 646 ~TTS~~~vL~~m~i~~~F~--~~i~Vpnl~~ 674 (744)
T KOG0741|consen 646 GTTSRREVLQEMGILDCFS--STIHVPNLTT 674 (744)
T ss_pred ecccHHHHHHHcCHHHhhh--heeecCccCc
Confidence 66655554433 332 3556655443
No 386
>PRK05973 replicative DNA helicase; Provisional
Probab=88.17 E-value=0.52 Score=52.78 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEe
Q 000916 194 KDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCT 241 (1225)
Q Consensus 194 r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicT 241 (1225)
.+++..-+..+..++|.|++|+||||..-||+.+.+. .|..+-++..
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSl 100 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTL 100 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEE
Confidence 4567778889999999999999999999999988764 3554444433
No 387
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=88.07 E-value=3.6 Score=49.53 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=91.4
Q ss_pred CCCChHHHHHHHHHHHcCCe-----EEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCC
Q 000916 187 KLPISSFKDVITSTVDSNQV-----VLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGE 261 (1225)
Q Consensus 187 ~LPi~~~r~eIl~aI~~~~V-----vII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge 261 (1225)
.+|.-.+|.|.+..+....- =|+.-|-|-|||.|---.+|.+.. + ..-+|..|. +|-++--+.++.-..
T Consensus 182 ii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~--r--a~tLVvaP~-VAlmQW~nEI~~~T~- 255 (791)
T KOG1002|consen 182 IIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD--R--APTLVVAPT-VALMQWKNEIERHTS- 255 (791)
T ss_pred eecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc--c--CCeeEEccH-HHHHHHHHHHHHhcc-
Confidence 47888999999887754433 256678999999998887776432 2 235666675 455555555544332
Q ss_pred ccCCeEEEEEeecccCC-----CCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCcc--EEEecccc---cccc
Q 000916 262 NIGDNIGYKIRLESKGG-----KHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALT--HIIVDEIH---ERDR 331 (1225)
Q Consensus 262 ~lG~~VGY~IR~es~~s-----~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~s--hVIvDEvH---ER~~ 331 (1225)
|.+--|.-....+.. .+-.++..|.-++-............+.+.-.-...|..+. -||+||+| +|.-
T Consensus 256 --gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~s 333 (791)
T KOG1002|consen 256 --GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQS 333 (791)
T ss_pred --CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccc
Confidence 665556554444332 24578899998887766542110000000001112455544 59999999 4666
Q ss_pred chhHHHHHHHHhCcCCCCceEEEEcccc
Q 000916 332 YSDFMLAIIRDMLPSYPHLRLILMSATL 359 (1225)
Q Consensus 332 ~tD~LL~lLk~ll~~~~~LKlILMSATl 359 (1225)
+|---.--|+- -+-+.+|.|.
T Consensus 334 nTArAV~~L~t-------t~rw~LSGTP 354 (791)
T KOG1002|consen 334 NTARAVFALET-------TYRWCLSGTP 354 (791)
T ss_pred cHHHHHHhhHh-------hhhhhccCCc
Confidence 66443333332 2335567775
No 388
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=88.07 E-value=0.3 Score=47.99 Aligned_cols=16 Identities=50% Similarity=0.848 Sum_probs=14.0
Q ss_pred eEEEEccCCCchhchH
Q 000916 206 VVLISGETGCGKTTQV 221 (1225)
Q Consensus 206 VvII~GeTGsGKTTQv 221 (1225)
|++|+|.+||||||..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 6899999999999754
No 389
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.01 E-value=2.7 Score=55.55 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=24.7
Q ss_pred CChHHHHHHHHHH-----HcCCeEEEEccCCCchhchH
Q 000916 189 PISSFKDVITSTV-----DSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 189 Pi~~~r~eIl~aI-----~~~~VvII~GeTGsGKTTQv 221 (1225)
|+....++|-..+ +....+++.|++|||||+.+
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHH
Confidence 7776666665555 24457789999999999876
No 390
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.00 E-value=0.78 Score=56.81 Aligned_cols=42 Identities=31% Similarity=0.349 Sum_probs=34.0
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEec
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQ 242 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQ 242 (1225)
+-.+.+++|+|++||||||..-||+++.+...+.+|-.+.+.
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 446899999999999999999999998775446666666555
No 391
>PRK04328 hypothetical protein; Provisional
Probab=87.93 E-value=0.89 Score=51.25 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=32.1
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEe
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCT 241 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicT 241 (1225)
+..+.+++|.|++|||||+..-||+++.+ .+|..|-.+.+
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~-~~ge~~lyis~ 59 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGVYVAL 59 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCcEEEEEe
Confidence 44689999999999999999999999865 44666655555
No 392
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=87.92 E-value=0.94 Score=51.36 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=32.9
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEec
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQ 242 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQ 242 (1225)
+..+.+++|+|++||||||..-||+.+.+. ++..|-.+.+.
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~E 73 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVE 73 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEec
Confidence 346899999999999999999999988654 35666666665
No 393
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.79 E-value=2.2 Score=54.40 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=19.3
Q ss_pred HHHHHHcC---CeEEEEccCCCchhchHHHH
Q 000916 197 ITSTVDSN---QVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 197 Il~aI~~~---~VvII~GeTGsGKTTQvPq~ 224 (1225)
+..++..+ ..++++|+.|+||||..=.+
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHHHHH
Confidence 33444444 34689999999999876444
No 394
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=87.73 E-value=3 Score=50.25 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=25.8
Q ss_pred cccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEccc
Q 000916 313 DDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSAT 358 (1225)
Q Consensus 313 ~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSAT 358 (1225)
+...++.++||||+|.-+ ....-.+||-+ ...|+-.++++.||
T Consensus 113 p~~~~~kViiIDead~m~--~~aanaLLk~L-Eep~~~~~fIL~a~ 155 (394)
T PRK07940 113 PSTGRWRIVVIEDADRLT--ERAANALLKAV-EEPPPRTVWLLCAP 155 (394)
T ss_pred cccCCcEEEEEechhhcC--HHHHHHHHHHh-hcCCCCCeEEEEEC
Confidence 345788999999999543 33434455543 44444455555554
No 395
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=87.71 E-value=0.41 Score=48.85 Aligned_cols=31 Identities=45% Similarity=0.631 Sum_probs=24.3
Q ss_pred HHHHHHHcCCeEEEEccCCCchhchHHHHHHH
Q 000916 196 VITSTVDSNQVVLISGETGCGKTTQVPQFLLE 227 (1225)
Q Consensus 196 eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe 227 (1225)
.|.+.+..+.++++.|+.||||||.+ +.+.+
T Consensus 14 ~l~~~l~~~~~i~l~G~lGaGKTtl~-~~l~~ 44 (133)
T TIGR00150 14 AFAKPLDFGTVVLLKGDLGAGKTTLV-QGLLQ 44 (133)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHH-HHHHH
Confidence 45666778999999999999999877 33433
No 396
>PRK07667 uridine kinase; Provisional
Probab=87.68 E-value=1 Score=48.73 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=22.0
Q ss_pred HHHHHHHHcC----CeEEEEccCCCchhchHHHHHHHH
Q 000916 195 DVITSTVDSN----QVVLISGETGCGKTTQVPQFLLEH 228 (1225)
Q Consensus 195 ~eIl~aI~~~----~VvII~GeTGsGKTTQvPq~ILe~ 228 (1225)
++|+++|..+ .+|.|+|.+||||||.. +.|.+.
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla-~~L~~~ 40 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFV-ANLKEN 40 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHH-HHHHHH
Confidence 3455555432 37789999999999976 334443
No 397
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.67 E-value=0.3 Score=53.28 Aligned_cols=21 Identities=38% Similarity=0.805 Sum_probs=19.1
Q ss_pred HHcCCeEEEEccCCCchhchH
Q 000916 201 VDSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQv 221 (1225)
|..|+|+.+.||.||||||.+
T Consensus 30 i~~~~VTAlIGPSGcGKST~L 50 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLL 50 (253)
T ss_pred ccCCceEEEECCCCcCHHHHH
Confidence 568999999999999999976
No 398
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=87.62 E-value=1.6 Score=55.06 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=20.4
Q ss_pred HHHHHHHcC---CeEEEEccCCCchhchHHHH
Q 000916 196 VITSTVDSN---QVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 196 eIl~aI~~~---~VvII~GeTGsGKTTQvPq~ 224 (1225)
.+..++.++ +.++++|+.|+||||..=.+
T Consensus 27 ~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 27 ILVNAILNNKLTHAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 344555554 45789999999999876433
No 399
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.55 E-value=4 Score=52.99 Aligned_cols=135 Identities=17% Similarity=0.176 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCHHHHHHHHHHHHcCCCCC---CCCceEEEEecCCCCHHHHHHHhcCC----CCCCceE
Q 000916 549 EQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFR---DTSKFVIIPLHSMVPSVQQKKVFKRP----PPGCRKI 621 (1225)
Q Consensus 549 ~~ll~~I~~~~~~G~ILVFLpG~~eI~~l~~~L~~~~~~~---~~~~~~vl~LHs~l~~~eQ~~vF~~~----p~g~rKI 621 (1225)
.++|..++.. .+|.+|||+|++.-++.+.+.+....... ....+.+=+ .+. .+..++++.+ ..|.--|
T Consensus 511 ~~~i~~~~~~-~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~---~~~~~~l~~f~~~~~~~~gav 585 (705)
T TIGR00604 511 GELLVEFSKI-IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDA---QETSDALERYKQAVSEGRGAV 585 (705)
T ss_pred HHHHHHHhhc-CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCc---chHHHHHHHHHHHHhcCCceE
Confidence 3444445443 46999999999999999998886543211 011122222 211 2334444444 2344569
Q ss_pred EEec--chhccccCCCC--eEEEEeCCCcccccccCCCC--cccc-------cc-cccC---HhhHHhhcCccCCCcc--
Q 000916 622 ILST--NIAETAITIDD--VVYVIDSGRMKEKSYDPYNN--VSTL-------QS-SWVS---KASAKQRAGRAGRCQA-- 682 (1225)
Q Consensus 622 ILAT--NIAEtSITI~d--V~~VIDsG~~Ke~~yd~~~~--~s~L-------~~-~wiS---kasa~QR~GRAGR~~~-- 682 (1225)
++|+ ....-||+++| .+.||=.|++-....|+... +..+ .. .|.. --...|=.||+=|...
T Consensus 586 L~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~ 665 (705)
T TIGR00604 586 LLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDY 665 (705)
T ss_pred EEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCce
Confidence 9999 77888999998 68888789876433333211 0000 00 1221 1235677799988776
Q ss_pred eEEEEe
Q 000916 683 GICYHL 688 (1225)
Q Consensus 683 G~CyrL 688 (1225)
|..+-|
T Consensus 666 G~iill 671 (705)
T TIGR00604 666 GSIVLL 671 (705)
T ss_pred EEEEEE
Confidence 765544
No 400
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.39 E-value=1.8 Score=45.66 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.2
Q ss_pred HHcCCeEEEEccCCCchhchHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvP 222 (1225)
|..++++.|.|+.||||||.+=
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~ 46 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLK 46 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5689999999999999998663
No 401
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=87.39 E-value=2.8 Score=46.10 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=19.9
Q ss_pred CCeEEEEccCCCchhchHHHHHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLE 227 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe 227 (1225)
++.++|+|+.|+||||.+=+..+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999987666543
No 402
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.31 E-value=2.9 Score=55.39 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=18.8
Q ss_pred CeEEEEccCCCchhchHHHHHHHHHhcc
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHIWSK 232 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~~~~ 232 (1225)
.++++.|+||+|||+. -..|.+..+..
T Consensus 596 ~~~Lf~Gp~GvGKt~l-A~~La~~l~~~ 622 (852)
T TIGR03346 596 GSFLFLGPTGVGKTEL-AKALAEFLFDD 622 (852)
T ss_pred eEEEEEcCCCCCHHHH-HHHHHHHhcCC
Confidence 3688999999999954 34555555443
No 403
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=87.29 E-value=2.9 Score=59.86 Aligned_cols=124 Identities=16% Similarity=0.113 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHHHc--CCeEEEEccCCCchhchHH---HHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCcc
Q 000916 189 PISSFKDVITSTVDS--NQVVLISGETGCGKTTQVP---QFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 189 Pi~~~r~eIl~aI~~--~~VvII~GeTGsGKTTQvP---q~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
.....|.+.+..|.. +++++|.|..|+||||.+- ..+.+.+.. ...+|+..-|+--||..+.+ .
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L~~-----~---- 1087 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGELKS-----A---- 1087 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHHh-----c----
Confidence 456666677776643 5899999999999999883 344444322 23678888998777655532 1
Q ss_pred CCeEEEEEeecccCCCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHh
Q 000916 264 GDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDM 343 (1225)
Q Consensus 264 G~~VGY~IR~es~~s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~l 343 (1225)
| +. . .|--.||....... ..+.+...++|||||+= .+.+..+..+++.+
T Consensus 1088 g----~~----a----------~Ti~s~l~~~~~~~-----------~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~ 1136 (1960)
T TIGR02760 1088 G----VQ----A----------QTLDSFLTDISLYR-----------NSGGDFRNTLFILDESS--MVSNFQLTHATELV 1136 (1960)
T ss_pred C----Cc----h----------HhHHHHhcCccccc-----------ccCCCCcccEEEEEccc--cccHHHHHHHHHhc
Confidence 2 10 0 01111111000000 00235567899999995 56666666666655
Q ss_pred CcCCCCceEEEEc
Q 000916 344 LPSYPHLRLILMS 356 (1225)
Q Consensus 344 l~~~~~LKlILMS 356 (1225)
. .+.-|+||+-
T Consensus 1137 ~--~~~ak~vlvG 1147 (1960)
T TIGR02760 1137 Q--KSGSRAVSLG 1147 (1960)
T ss_pred c--CCCCEEEEeC
Confidence 3 2457888874
No 404
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=87.28 E-value=3.1 Score=52.53 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=20.2
Q ss_pred cccCCccEEEeccccccccchhHHHHHHHHh
Q 000916 313 DDVSALTHIIVDEIHERDRYSDFMLAIIRDM 343 (1225)
Q Consensus 313 ~~L~~~shVIvDEvHER~~~tD~LL~lLk~l 343 (1225)
|....+.++||||||.- .++..-.+||-+
T Consensus 115 p~~~~~kViIIDE~~~L--t~~a~naLLKtL 143 (559)
T PRK05563 115 PSEAKYKVYIIDEVHML--STGAFNALLKTL 143 (559)
T ss_pred cccCCeEEEEEECcccC--CHHHHHHHHHHh
Confidence 45678999999999953 344555566644
No 405
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=87.22 E-value=0.71 Score=53.78 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=31.5
Q ss_pred HHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHH
Q 000916 197 ITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRI 246 (1225)
Q Consensus 197 Il~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRi 246 (1225)
+..++.....++|+|.|||||||.+--++..- . ..-+|||.+-+..
T Consensus 166 L~~av~~r~NILisGGTGSGKTTlLNal~~~i--~--~~eRvItiEDtaE 211 (355)
T COG4962 166 LRRAVGIRCNILISGGTGSGKTTLLNALSGFI--D--SDERVITIEDTAE 211 (355)
T ss_pred HHHHHhhceeEEEeCCCCCCHHHHHHHHHhcC--C--CcccEEEEeehhh
Confidence 44455666799999999999999875444322 1 2238999887543
No 406
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=87.19 E-value=6.2 Score=54.98 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHH--cCCeEEEEccCCCchhchHHHHH--HHHHhccCCccEEEEecchHHHHHHHH
Q 000916 190 ISSFKDVITSTVD--SNQVVLISGETGCGKTTQVPQFL--LEHIWSKGETCKIVCTQPRRISATSVA 252 (1225)
Q Consensus 190 i~~~r~eIl~aI~--~~~VvII~GeTGsGKTTQvPq~I--Le~~~~~~~~~~IicTQPRRiaAisvA 252 (1225)
...-|.+.+..+. .+++++|.|..|+||||.+=..+ ++.+ ......+|+.+-|+--||..+.
T Consensus 836 Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l-~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 836 LTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNML-PESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred cCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHH-hhccCceEEEEechHHHHHHHH
Confidence 3455566666665 46999999999999999863322 1222 1223357888889877665553
No 407
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=87.17 E-value=0.29 Score=55.40 Aligned_cols=47 Identities=21% Similarity=0.418 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEe
Q 000916 195 DVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCT 241 (1225)
Q Consensus 195 ~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicT 241 (1225)
++++.-+..+.+++|.|+||+||||..-|++...+...+..+-.+.+
T Consensus 21 d~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 21 NKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44555678899999999999999999999988776543444444443
No 408
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=87.11 E-value=0.28 Score=49.31 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.1
Q ss_pred HHcCCeEEEEccCCCchhchHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvP 222 (1225)
|..+++++|.|+.||||||.+-
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~ 29 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLK 29 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred EcCCCEEEEEccCCCcccccee
Confidence 3568899999999999999874
No 409
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.08 E-value=1.5 Score=52.75 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=15.3
Q ss_pred cCCeEEEEccCCCchhchH
Q 000916 203 SNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQv 221 (1225)
...-|++.|++|||||+..
T Consensus 164 ~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCceEEECCCCCChHHHH
Confidence 3456899999999999654
No 410
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=87.01 E-value=0.7 Score=48.92 Aligned_cols=59 Identities=31% Similarity=0.424 Sum_probs=47.3
Q ss_pred cccCCccceeeccCCccchhhhhhhc-cccchhhccccchhhhhccccCchhHHHHHHHH
Q 000916 459 TLTGLTPLMVLAGKGRVGDVCMLLSL-GADCQLKAKDGRTALQLGEQENQPEVAQIIKKH 517 (1225)
Q Consensus 459 s~~g~t~l~~~a~~~~~~~~~~ll~~-g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~ 517 (1225)
...|.||||+++.-|+.+-+..|+.. |+|++...+.|.|.++.|...+..+++.+|-.+
T Consensus 69 DdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ 128 (226)
T KOG4412|consen 69 DDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEK 128 (226)
T ss_pred cccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhc
Confidence 45678888888888888888888877 888888888888888888888888887776554
No 411
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=86.95 E-value=0.71 Score=53.74 Aligned_cols=43 Identities=30% Similarity=0.502 Sum_probs=28.9
Q ss_pred HHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecc
Q 000916 197 ITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQP 243 (1225)
Q Consensus 197 Il~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQP 243 (1225)
+--+++.+..++|+|+|||||||.+- .|+... . ...+|++.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~-al~~~~-~--~~~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLK-SLVDEI-P--KDERIITIED 179 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHH-HHHccC-C--ccccEEEEcC
Confidence 33457789999999999999999883 344332 1 2235665543
No 412
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=86.86 E-value=0.36 Score=51.94 Aligned_cols=23 Identities=43% Similarity=0.832 Sum_probs=20.1
Q ss_pred HHHcCCeEEEEccCCCchhchHH
Q 000916 200 TVDSNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 200 aI~~~~VvII~GeTGsGKTTQvP 222 (1225)
.|.+++.|++.|+.||||||.+-
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLn 49 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLN 49 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHH
Confidence 46789999999999999999763
No 413
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=86.85 E-value=1.3 Score=57.16 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccC-CccEEEEecchHHHHHHHHHHHHHHhC
Q 000916 192 SFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKG-ETCKIVCTQPRRISATSVAERISVERG 260 (1225)
Q Consensus 192 ~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~-~~~~IicTQPRRiaAisvAeRVa~Erg 260 (1225)
..|.+++... +..++|.|..|||||+-+-.-|..-....+ .+-+|+|+-.+|-||..+.+|+....+
T Consensus 5 ~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 5 PGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred HHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 3455555542 334556677999999987666554432222 345799999999999999999987654
No 414
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=86.70 E-value=1.2 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.1
Q ss_pred HHcCCeEEEEccCCCchhchHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvP 222 (1225)
|..++++.|.|+.||||||.+=
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~ 46 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLAR 46 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998663
No 415
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.69 E-value=0.82 Score=53.52 Aligned_cols=103 Identities=25% Similarity=0.325 Sum_probs=63.0
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCC
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKH 280 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~ 280 (1225)
+....-|++-||.||||| -+|+++|.|-|...+..-++.+. +
T Consensus 124 l~p~kGiLL~GPpG~GKT-------------------------------mlAKA~Akeaga~fInv~~s~lt-----~-- 165 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKT-------------------------------MLAKAIAKEAGANFINVSVSNLT-----S-- 165 (386)
T ss_pred ccCCccceecCCCCchHH-------------------------------HHHHHHHHHcCCCcceeeccccc-----h--
Confidence 346778899999999999 15677888888776543333221 1
Q ss_pred ccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEecccc-----------c--cccchhHHHHHHHHhCcCC
Q 000916 281 SSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH-----------E--RDRYSDFMLAIIRDMLPSY 347 (1225)
Q Consensus 281 t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvH-----------E--R~~~tD~LL~lLk~ll~~~ 347 (1225)
=.|.-..-|++.+.+-+. .+ .=+.|.||||+ | +.+.+.|+. +.+=+...
T Consensus 166 --KWfgE~eKlv~AvFslAs-------------Kl-~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~--~WDGl~s~ 227 (386)
T KOG0737|consen 166 --KWFGEAQKLVKAVFSLAS-------------KL-QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMA--LWDGLSSK 227 (386)
T ss_pred --hhHHHHHHHHHHHHhhhh-------------hc-CcceeehhhHHHHHhhcccchHHHHHHHHHHHHH--HhccccCC
Confidence 123333445555543210 11 12679999995 3 333444443 45555666
Q ss_pred CCceEEEEcccc
Q 000916 348 PHLRLILMSATL 359 (1225)
Q Consensus 348 ~~LKlILMSATl 359 (1225)
.+-+|++|-||=
T Consensus 228 ~~~rVlVlgATN 239 (386)
T KOG0737|consen 228 DSERVLVLGATN 239 (386)
T ss_pred CCceEEEEeCCC
Confidence 778899999995
No 416
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=86.49 E-value=0.51 Score=47.48 Aligned_cols=29 Identities=34% Similarity=0.583 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCeEEEEccCCCchhchHH
Q 000916 194 KDVITSTVDSNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 194 r~eIl~aI~~~~VvII~GeTGsGKTTQvP 222 (1225)
-+.+.+.+..++||++.|+-|+||||.+=
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r 33 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVR 33 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHH
Confidence 35577788999999999999999998774
No 417
>PRK10263 DNA translocase FtsK; Provisional
Probab=86.46 E-value=1.2 Score=59.88 Aligned_cols=40 Identities=25% Similarity=0.587 Sum_probs=27.8
Q ss_pred CeEEEEccCCCchhchHHHHHHHHHhc-cCCccEEEEecch
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHIWS-KGETCKIVCTQPR 244 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~~~-~~~~~~IicTQPR 244 (1225)
..++|.|.||||||+.+=-+|+.-++. ....+++++.-|.
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK 1051 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPK 1051 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCC
Confidence 568999999999999988887765442 2234455555554
No 418
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=86.42 E-value=1.2 Score=54.85 Aligned_cols=80 Identities=24% Similarity=0.384 Sum_probs=51.6
Q ss_pred chhhHHHHHhhcCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHh---ccCCccEEEEecchHHHHHHH
Q 000916 175 DANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIW---SKGETCKIVCTQPRRISATSV 251 (1225)
Q Consensus 175 ~~~~~~~~~~R~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~---~~~~~~~IicTQPRRiaAisv 251 (1225)
+..++.+.+. |-+.|++|+.. ..|.++||.|..||||||.--+=+.--.+ +.-....|++.-|-|+-+-.+
T Consensus 203 s~~mrdIV~T-----IQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYi 276 (747)
T COG3973 203 SAKMRDIVET-----IQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYI 276 (747)
T ss_pred chhHHHHHHH-----hhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHH
Confidence 4455655542 33556777753 57899999999999999975543332222 211223499999999976665
Q ss_pred HHHHHHHhCC
Q 000916 252 AERISVERGE 261 (1225)
Q Consensus 252 AeRVa~Erge 261 (1225)
+. |-=|+|+
T Consensus 277 s~-VLPeLGe 285 (747)
T COG3973 277 SR-VLPELGE 285 (747)
T ss_pred HH-hchhhcc
Confidence 54 6566665
No 419
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=86.26 E-value=0.66 Score=55.51 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=22.6
Q ss_pred HHHcCCeEEEEccCCCchhchHHHHHHHHH
Q 000916 200 TVDSNQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 200 aI~~~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
.|..+|.++|+|++||||||.+ +.|+...
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~-~~i~~~I 192 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLL-QKIAQAI 192 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHH-HHHHHhh
Confidence 4678999999999999999854 4455543
No 420
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=86.24 E-value=4 Score=49.13 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=38.1
Q ss_pred CCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccc---hhHHHHHHHHhCcCCCCceEEEE
Q 000916 279 KHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRY---SDFMLAIIRDMLPSYPHLRLILM 355 (1225)
Q Consensus 279 ~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~---tD~LL~lLk~ll~~~~~LKlILM 355 (1225)
++.+++|.|...+.+.+...-. ...-..|.... +++.++||.++-..-. --.+.-++..+....+ +||+.
T Consensus 142 ~~a~v~y~~se~f~~~~v~a~~----~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvlt 214 (408)
T COG0593 142 PNARVVYLTSEDFTNDFVKALR----DNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--QIVLT 214 (408)
T ss_pred CCceEEeccHHHHHHHHHHHHH----hhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC--EEEEE
Confidence 4456777777776655554310 00111233455 8999999999953332 2233444444443332 66666
Q ss_pred cc
Q 000916 356 SA 357 (1225)
Q Consensus 356 SA 357 (1225)
|-
T Consensus 215 sd 216 (408)
T COG0593 215 SD 216 (408)
T ss_pred cC
Confidence 53
No 421
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=86.15 E-value=1.3 Score=51.39 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=29.1
Q ss_pred HcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecc
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQP 243 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQP 243 (1225)
....++.|+|.+||||||.+-.+.... ...+..+.++..-|
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~-~~~~~~v~~i~~D~ 72 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL-RRRGLKVAVIAVDP 72 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEecCC
Confidence 467899999999999999887665432 23455555665555
No 422
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=86.14 E-value=3.3 Score=49.78 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=38.3
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHH-HHHHHHHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRI-SATSVAERI 255 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRi-aAisvAeRV 255 (1225)
++..++.|..|||||..+-+.++..+.....+.+++|+-|+.- ...++...+
T Consensus 1 ~~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l 53 (396)
T TIGR01547 1 AEEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDI 53 (396)
T ss_pred CceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHH
Confidence 3578899999999999998888877765324589999988665 334444444
No 423
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=86.09 E-value=1 Score=48.93 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=29.9
Q ss_pred HcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEe
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCT 241 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicT 241 (1225)
..++++.|.|++|||||+..-|++.+... .+..+-.+.|
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~-~g~~v~yi~~ 48 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAAR-QGKKVVYIDT 48 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEEC
Confidence 45789999999999999999888887653 3444555555
No 424
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=86.06 E-value=0.46 Score=54.74 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEE---ecchHHHHHHHHHHH
Q 000916 195 DVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVC---TQPRRISATSVAERI 255 (1225)
Q Consensus 195 ~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~Iic---TQPRRiaAisvAeRV 255 (1225)
..++.-.+.+..+|++|+|||||||.+--|-||-+.. |-. -..| ..-.|+|+.-+-+.+
T Consensus 264 Nk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~Q-GVn-TLwgSFEi~n~rla~~mL~Qya 325 (514)
T KOG2373|consen 264 NKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQ-GVN-TLWGSFEIPNKRLAHWMLVQYA 325 (514)
T ss_pred HHHhccCCCCceEEEecCCCCCceeEehHhhHHHHhh-hhh-heeeeeecchHHHHHHHHHHHc
Confidence 3455556677889999999999999999999987642 111 1222 233566666555433
No 425
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=86.04 E-value=0.55 Score=47.41 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=16.8
Q ss_pred eEEEEccCCCchhchHHHHH
Q 000916 206 VVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~I 225 (1225)
||+++|.+||||||.+=++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 68999999999998875544
No 426
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=86.04 E-value=2.7 Score=51.66 Aligned_cols=29 Identities=38% Similarity=0.518 Sum_probs=20.7
Q ss_pred HHHHHHHcC---CeEEEEccCCCchhchHHHH
Q 000916 196 VITSTVDSN---QVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 196 eIl~aI~~~---~VvII~GeTGsGKTTQvPq~ 224 (1225)
.+..++..+ ...++.|+.|+||||..=.+
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHH
Confidence 345555554 45789999999999876444
No 427
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=85.97 E-value=2.8 Score=54.40 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.2
Q ss_pred CeEEEEccCCCchhchHH
Q 000916 205 QVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvP 222 (1225)
..+++.|++|+||||..-
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999998764
No 428
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=85.96 E-value=0.68 Score=48.75 Aligned_cols=30 Identities=17% Similarity=0.489 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhchHHHHH
Q 000916 195 DVITSTVDSNQVVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 195 ~eIl~aI~~~~VvII~GeTGsGKTTQvPq~I 225 (1225)
+++.+.+.+ ++++++|++|+||||.+=..+
T Consensus 27 ~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 27 EELKELLKG-KTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp HHHHHHHTT-SEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHhcC-CEEEEECCCCCCHHHHHHHHH
Confidence 445555655 999999999999999875544
No 429
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=85.63 E-value=1.4 Score=48.65 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=30.2
Q ss_pred HHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEE
Q 000916 200 TVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVC 240 (1225)
Q Consensus 200 aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~Iic 240 (1225)
=+..+.+++|.|++||||||..-+++.+.+. ++..+-.+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is 55 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVT 55 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEE
Confidence 3557899999999999999999999887653 455453333
No 430
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.54 E-value=0.89 Score=56.25 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=22.8
Q ss_pred HHHHHHHc-CCeEEEEccCCCchhchHHHHHHHHH
Q 000916 196 VITSTVDS-NQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 196 eIl~aI~~-~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
.+..++.. +-+++|+|+|||||||.+-. ++...
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a-~L~~l 266 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA-ALSRL 266 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH-HHhcc
Confidence 34445554 44789999999999998843 34443
No 431
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=85.51 E-value=0.62 Score=49.26 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=16.7
Q ss_pred CCeEEEEccCCCchhchHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQ 223 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq 223 (1225)
+++++|.|++||||||+.-.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~ 20 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKA 20 (180)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 47899999999999996533
No 432
>PHA02730 ankyrin-like protein; Provisional
Probab=85.38 E-value=0.51 Score=59.92 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=50.3
Q ss_pred ccCCccceeeccCC---ccchhhhhhhccccchhhccccchhhhhccccC--chhHHHHHHHHh
Q 000916 460 LTGLTPLMVLAGKG---RVGDVCMLLSLGADCQLKAKDGRTALQLGEQEN--QPEVAQIIKKHM 518 (1225)
Q Consensus 460 ~~g~t~l~~~a~~~---~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~--~~~~~~~l~~~~ 518 (1225)
..|.||||+++..+ ..+.+..||+.||+++.+|.+|+|++.+|...+ +.++++.|-.+.
T Consensus 39 ~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~ 102 (672)
T PHA02730 39 RRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSY 102 (672)
T ss_pred CCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcC
Confidence 45899999998765 478899999999999999999999999987655 788888887664
No 433
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.33 E-value=0.46 Score=57.92 Aligned_cols=22 Identities=36% Similarity=0.890 Sum_probs=18.9
Q ss_pred cCCeEEEEccCCCchhchHHHH
Q 000916 203 SNQVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ 224 (1225)
.+++++|+|++||||||.|=..
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvL 130 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVL 130 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHH
Confidence 5789999999999999988443
No 434
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=85.31 E-value=3.1 Score=50.42 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=15.2
Q ss_pred CCeEEEEccCCCchhchH
Q 000916 204 NQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQv 221 (1225)
...+++.|+|||||||..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467899999999999755
No 435
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.24 E-value=5.3 Score=52.11 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHH-----cCCeEEEEccCCCchhchH
Q 000916 189 PISSFKDVITSTVD-----SNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 189 Pi~~~r~eIl~aI~-----~~~VvII~GeTGsGKTTQv 221 (1225)
|+....++|-..+. ....+++.|++|+|||+.+
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 55554444444443 3456788999999999654
No 436
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.23 E-value=3.8 Score=53.46 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=13.5
Q ss_pred eEEEEccCCCchhchH
Q 000916 206 VVLISGETGCGKTTQV 221 (1225)
Q Consensus 206 VvII~GeTGsGKTTQv 221 (1225)
++++.|+||||||+..
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 5789999999999644
No 437
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.18 E-value=3.6 Score=54.58 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=25.7
Q ss_pred CCCChHHHHHHHHHHH-----cCCeEEEEccCCCchhchH
Q 000916 187 KLPISSFKDVITSTVD-----SNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 187 ~LPi~~~r~eIl~aI~-----~~~VvII~GeTGsGKTTQv 221 (1225)
-=|+.....+|-..|. ....+|+.|++|||||+.+
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHH
Confidence 3477777777666663 3457788999999999766
No 438
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=85.17 E-value=9.2 Score=39.62 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=31.1
Q ss_pred cCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccc-cHHHHHh--hhCCCCeEec
Q 000916 315 VSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATL-DADRFSQ--YFGGCPVIQV 376 (1225)
Q Consensus 315 L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATl-d~~~Fs~--yF~~~pvi~I 376 (1225)
..++++||||=+. +..+.+. ++. ..|+.+|+++.++ |.-.+.+ -|..|.++.|
T Consensus 89 ~~~~D~iiIDtaG---~~~~~~~-~~~-----~Ad~~ivv~tpe~~D~y~~~k~~~~~~~~~~~~ 144 (148)
T cd03114 89 AAGFDVIIVETVG---VGQSEVD-IAS-----MADTTVVVMAPGAGDDIQAIKAGIMEIADIVVV 144 (148)
T ss_pred hcCCCEEEEECCc---cChhhhh-HHH-----hCCEEEEEECCCchhHHHHhhhhHhhhcCEEEE
Confidence 3589999999965 2233321 222 3578899998885 5544444 2334544433
No 439
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=85.14 E-value=0.47 Score=50.69 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.6
Q ss_pred HHcCCeEEEEccCCCchhchHHHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ 224 (1225)
|..+.++.|.|+.||||||.+=..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 567899999999999999998543
No 440
>PRK00300 gmk guanylate kinase; Provisional
Probab=85.03 E-value=0.64 Score=50.29 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=19.5
Q ss_pred HcCCeEEEEccCCCchhchHHHHH
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~I 225 (1225)
..+++++|+|++||||||..-+..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~ 26 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALL 26 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999998765443
No 441
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=84.97 E-value=2 Score=55.31 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccC-CccEEEEecchHHHHHHHHHHHHHHhC
Q 000916 193 FKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKG-ETCKIVCTQPRRISATSVAERISVERG 260 (1225)
Q Consensus 193 ~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~-~~~~IicTQPRRiaAisvAeRVa~Erg 260 (1225)
.|.+++.. ....++|.|..||||||.+-.-|.......+ .+-+|+|+-.+|-||..+-+|+....|
T Consensus 5 ~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 5 QQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred HHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 34445543 3455778899999999988877766553222 345788777777888899999977654
No 442
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=84.96 E-value=0.53 Score=46.21 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=20.8
Q ss_pred HHcCCeEEEEccCCCchhchHHHHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~I 225 (1225)
+..++.++|.|++||||||.+-..+
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 4567899999999999999887643
No 443
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.88 E-value=1.4 Score=54.47 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=34.0
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecch
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPR 244 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPR 244 (1225)
+-.+.+++|.|++|+||||...||+.+.+. +|..|-.+..+=+
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs 302 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEES 302 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCC
Confidence 567899999999999999999999988764 4556655555543
No 444
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=84.86 E-value=6 Score=41.60 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=29.7
Q ss_pred ccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccc
Q 000916 314 DVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATL 359 (1225)
Q Consensus 314 ~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATl 359 (1225)
.-..+.++||||+|. ++.+..=++||-+=.-.++..+||.+-..
T Consensus 99 ~~~~~KviiI~~ad~--l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 99 SEGKYKVIIIDEADK--LTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp TTSSSEEEEEETGGG--S-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred hcCCceEEEeehHhh--hhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 446889999999994 56666666777654444567777776554
No 445
>PRK11054 helD DNA helicase IV; Provisional
Probab=84.85 E-value=3.4 Score=53.31 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=50.5
Q ss_pred cCCCChHHHHHHHHHHHcCCeEEEEccCCCchhchHHH---HHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhC
Q 000916 186 SKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQ---FLLEHIWSKGETCKIVCTQPRRISATSVAERISVERG 260 (1225)
Q Consensus 186 ~~LPi~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq---~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erg 260 (1225)
.+-|....|.+.+.. ....++|.|..||||||-+-- |+++... ..+-+|+++-.+|-||..+.+|+....|
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~--~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ--AQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC--CCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 456788888776643 344567888899999987644 3343321 2345899999999999999999976543
No 446
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.67 E-value=1.1 Score=51.39 Aligned_cols=26 Identities=35% Similarity=0.663 Sum_probs=22.0
Q ss_pred HHHcCCeEEEEccCCCchhchHHHHH
Q 000916 200 TVDSNQVVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 200 aI~~~~VvII~GeTGsGKTTQvPq~I 225 (1225)
.+..++-|+++|+||||||+.+=.++
T Consensus 29 l~~~~~pvLl~G~~GtGKT~li~~~l 54 (272)
T PF12775_consen 29 LLSNGRPVLLVGPSGTGKTSLIQNFL 54 (272)
T ss_dssp HHHCTEEEEEESSTTSSHHHHHHHHH
T ss_pred HHHcCCcEEEECCCCCchhHHHHhhh
Confidence 46788999999999999998776655
No 447
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=84.59 E-value=4 Score=51.48 Aligned_cols=29 Identities=31% Similarity=0.623 Sum_probs=20.6
Q ss_pred HHHHHHHcC---CeEEEEccCCCchhchHHHH
Q 000916 196 VITSTVDSN---QVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 196 eIl~aI~~~---~VvII~GeTGsGKTTQvPq~ 224 (1225)
.+..+|.++ ...+++|+.|+||||..=.+
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 27 TLKHSIESNKIANAYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 345555554 34689999999999876444
No 448
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=84.51 E-value=8.3 Score=44.84 Aligned_cols=131 Identities=18% Similarity=0.140 Sum_probs=59.8
Q ss_pred EEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHH--HhCCccCCeEEEEEeecccC--CCCccE
Q 000916 208 LISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISV--ERGENIGDNIGYKIRLESKG--GKHSSI 283 (1225)
Q Consensus 208 II~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~--Erge~lG~~VGY~IR~es~~--s~~t~I 283 (1225)
+|.|+.|+|||+.+..+++..+...+....|++....+-++..+...... +...... .+.+.-..+... .....|
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~nG~~i 79 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWF-EIKFNEWNDRKIILPNGSRI 79 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTT-S--EEEE-SSEEEETTS-EE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhc-CcccccCCCCcEEecCceEE
Confidence 57899999999999998888887665445677775555555544442211 1111111 122221111111 234456
Q ss_pred EEEccHH--HHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEcccc
Q 000916 284 VFCTNGV--LLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATL 359 (1225)
Q Consensus 284 ~f~T~Gv--LLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMSATl 359 (1225)
.|++.+- =...+.+ .++..||+||+=.- .-+....+++...........++.|-|.
T Consensus 80 ~~~~~~~~~~~~~~~G------------------~~~~~i~iDE~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~p~ 137 (384)
T PF03237_consen 80 QFRGADSPDSGDNIRG------------------FEYDLIIIDEAAKV--PDDAFSELIRRLRATWGGSIRMYISTPP 137 (384)
T ss_dssp EEES-----SHHHHHT------------------S--SEEEEESGGGS--TTHHHHHHHHHHHHCSTT--EEEEEE--
T ss_pred EEeccccccccccccc------------------cccceeeeeecccC--chHHHHHHHHhhhhcccCcceEEeecCC
Confidence 6666432 1223332 35789999996432 1233444445544444434333555554
No 449
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=84.48 E-value=0.61 Score=49.35 Aligned_cols=57 Identities=32% Similarity=0.356 Sum_probs=50.5
Q ss_pred ccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccccCchhHHHHHHH
Q 000916 460 LTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKK 516 (1225)
Q Consensus 460 ~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~ 516 (1225)
..|.|+|+.++|+++.+...+|+..|+.+.++|..|.|+++-|...+.-++.++|-.
T Consensus 104 n~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~ 160 (226)
T KOG4412|consen 104 NGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLIS 160 (226)
T ss_pred CCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHh
Confidence 468899999999999999999999999999999999999998888888777776644
No 450
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=84.35 E-value=0.52 Score=51.40 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=16.7
Q ss_pred cCCeEEEEccCCCchhchH
Q 000916 203 SNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQv 221 (1225)
.+.++.|+|++||||||..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVA 23 (207)
T ss_pred CeEEEEEECCCCCCHHHHH
Confidence 4678899999999999966
No 451
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=84.28 E-value=5.9 Score=52.63 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=25.3
Q ss_pred CCChHHHHHHHHHHH-----cCCeEEEEccCCCchhchHHH
Q 000916 188 LPISSFKDVITSTVD-----SNQVVLISGETGCGKTTQVPQ 223 (1225)
Q Consensus 188 LPi~~~r~eIl~aI~-----~~~VvII~GeTGsGKTTQvPq 223 (1225)
=|+....++|-..+. ....+|+.|++|+|||+.+=-
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 467666666555553 346777899999999987643
No 452
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=84.27 E-value=1.7 Score=51.66 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=25.9
Q ss_pred CccEEEecccccccc-chhHHHHHHHHhCcCCCCceEEEEcccc
Q 000916 317 ALTHIIVDEIHERDR-YSDFMLAIIRDMLPSYPHLRLILMSATL 359 (1225)
Q Consensus 317 ~~shVIvDEvHER~~-~tD~LL~lLk~ll~~~~~LKlILMSATl 359 (1225)
.=++++|||||.-+- .-|+||-.+- +=.|||.-||-
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp~vE-------~G~iilIGATT 140 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLPHVE-------NGTIILIGATT 140 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhhhhc-------CCeEEEEeccC
Confidence 347899999996332 4677775543 45899999996
No 453
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=84.24 E-value=0.3 Score=37.06 Aligned_cols=31 Identities=39% Similarity=0.474 Sum_probs=28.5
Q ss_pred CCccceeeccCCccchhhhhhhccccchhhc
Q 000916 462 GLTPLMVLAGKGRVGDVCMLLSLGADCQLKA 492 (1225)
Q Consensus 462 g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~ 492 (1225)
|.||||+++..+..+-+..|+..|++++.++
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 7899999999999999999999999998765
No 454
>CHL00176 ftsH cell division protein; Validated
Probab=84.16 E-value=4.5 Score=51.73 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=16.3
Q ss_pred CCeEEEEccCCCchhchHHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ 224 (1225)
.+-+++.|++|||||+..-..
T Consensus 216 p~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 345899999999999766433
No 455
>PRK10436 hypothetical protein; Provisional
Probab=84.02 E-value=1.3 Score=54.52 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=23.4
Q ss_pred HHHHHHH-cCCeEEEEccCCCchhchHHHHHHHHH
Q 000916 196 VITSTVD-SNQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 196 eIl~aI~-~~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
.+.+++. .+-.++|+|+|||||||-+-. +++..
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a-~l~~~ 242 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS-ALQTL 242 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH-HHHhh
Confidence 3444554 566899999999999998844 44443
No 456
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=84.00 E-value=1.1 Score=56.42 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=24.3
Q ss_pred HHHHHHHHH-cCCeEEEEccCCCchhchHHHHHHHHH
Q 000916 194 KDVITSTVD-SNQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 194 r~eIl~aI~-~~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
.+.+.+++. .+-.++|+|+|||||||.+-- +++..
T Consensus 305 ~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a-~l~~~ 340 (564)
T TIGR02538 305 KALFLEAIHKPQGMVLVTGPTGSGKTVSLYT-ALNIL 340 (564)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHHHH-HHHhh
Confidence 344555555 456888999999999998733 44443
No 457
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=83.93 E-value=1.1 Score=58.73 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=76.1
Q ss_pred ChHHHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhC---CccCCe
Q 000916 190 ISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERG---ENIGDN 266 (1225)
Q Consensus 190 i~~~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erg---e~lG~~ 266 (1225)
...+--+++-.|.=|+=-|.--.||=|||...-.+++=.++ .|.++.||-+-. .+|+|=|+.+| +-+|-+
T Consensus 137 m~~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL-~G~gVHvVTvND------YLA~RDaewm~p~y~flGLt 209 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNAL-TGRGVHVVTVND------YLAQRDKEWMNPVFEFHGLS 209 (1025)
T ss_pred ccccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHH-cCCCcEEEeech------HhhhhhHHHHHHHHHHhCCe
Confidence 33444568888877777778889999999865444432333 244566665443 57788777776 457999
Q ss_pred EEEEEeecc----cCCCCccEEEEccHH-----HHHHHHhcCcccccccCCCccccccCCccEEEecccc
Q 000916 267 IGYKIRLES----KGGKHSSIVFCTNGV-----LLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH 327 (1225)
Q Consensus 267 VGY~IR~es----~~s~~t~I~f~T~Gv-----LLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvH 327 (1225)
||.....-+ +..=.+.|+|+|+.= |-..|...+ -+....++.+.|||||+
T Consensus 210 Vg~i~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~-----------~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 210 VGVILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTP-----------EEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred eeeeCCCCCHHHHHHhCCCcceecCCCccccccchhccccch-----------hhhhccCCceEEEechh
Confidence 996532111 112267899999863 333332221 12356788999999998
No 458
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=83.88 E-value=2 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.9
Q ss_pred HHHHcCCeEEEEccCCCchhchH
Q 000916 199 STVDSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 199 ~aI~~~~VvII~GeTGsGKTTQv 221 (1225)
..++.|..+|..|++|+|||...
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla 226 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIY 226 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHH
Confidence 56789999999999999999544
No 459
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=83.82 E-value=1.8 Score=56.00 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHH
Q 000916 193 FKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERI 255 (1225)
Q Consensus 193 ~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRV 255 (1225)
+|+.++.++...+..+|.|-+|+||||.+...|- .....| .+|+.|.=+-.|.-.+--+.
T Consensus 674 Qr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIk-iL~~~g--kkVLLtsyThsAVDNILiKL 733 (1100)
T KOG1805|consen 674 QRQALLKALAAEDYALILGMPGTGKTTTISLLIK-ILVALG--KKVLLTSYTHSAVDNILIKL 733 (1100)
T ss_pred HHHHHHHHHhccchheeecCCCCCchhhHHHHHH-HHHHcC--CeEEEEehhhHHHHHHHHHH
Confidence 5778899999999999999999999998876553 333333 37888888877654444444
No 460
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.81 E-value=4 Score=53.28 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=16.8
Q ss_pred HcCCeEEEEccCCCchhchH
Q 000916 202 DSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQv 221 (1225)
...+.+++.|++||||||.+
T Consensus 210 ~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCceEEEECCCCCChHHHH
Confidence 45678999999999999765
No 461
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=83.71 E-value=3.9 Score=48.13 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=32.9
Q ss_pred HHHHHHHHc----CCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecch
Q 000916 195 DVITSTVDS----NQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPR 244 (1225)
Q Consensus 195 ~eIl~aI~~----~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPR 244 (1225)
.++++.+.. ..+|.|+|..||||||.+-.++..- ...+..+-|+..-|.
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l-~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL-IEQGHKVAVLAVDPS 95 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEeCCC
Confidence 456666542 4578899999999999876654332 233555677777774
No 462
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=83.69 E-value=1.2 Score=49.31 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.3
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
|..+.++.|+|++||||||..-|+++...
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~ 44 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQ 44 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHee
Confidence 56789999999999999999999987643
No 463
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=83.68 E-value=1.2 Score=47.59 Aligned_cols=18 Identities=50% Similarity=0.649 Sum_probs=15.0
Q ss_pred eEEEEccCCCchhchHHH
Q 000916 206 VVLISGETGCGKTTQVPQ 223 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq 223 (1225)
+|.|+|.+||||||..=+
T Consensus 1 ii~i~G~sgsGKttla~~ 18 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKK 18 (179)
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 578999999999987633
No 464
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.52 E-value=6.3 Score=46.02 Aligned_cols=133 Identities=18% Similarity=0.295 Sum_probs=80.1
Q ss_pred CeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeecccCCCCccEE
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESKGGKHSSIV 284 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~~s~~t~I~ 284 (1225)
-|++++|-.|+||||-+-..-.- +...|..+-+.-.-.=|.+|+.--+-.++..|.. | |... ..+.-+.+
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~-l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~----v---I~~~-~G~DpAaV- 209 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKY-LKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVP----V---ISGK-EGADPAAV- 209 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHH-HHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCe----E---EccC-CCCCcHHH-
Confidence 47778999999999998764432 2245666666666777888887766555444332 2 2222 22222333
Q ss_pred EEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcC-C------CCceEEEEcc
Q 000916 285 FCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPS-Y------PHLRLILMSA 357 (1225)
Q Consensus 285 f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~-~------~~LKlILMSA 357 (1225)
..+-++.. .-.+|++||+|=+- |--+-.=|+.-|+.+.+. . |+=.++..=|
T Consensus 210 ------afDAi~~A---------------kar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDA 267 (340)
T COG0552 210 ------AFDAIQAA---------------KARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDA 267 (340)
T ss_pred ------HHHHHHHH---------------HHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEc
Confidence 33445443 45799999999998 555555667777665432 1 3335555689
Q ss_pred cc--cHHHHHhhhC
Q 000916 358 TL--DADRFSQYFG 369 (1225)
Q Consensus 358 Tl--d~~~Fs~yF~ 369 (1225)
|. |+=.=+++|+
T Consensus 268 ttGqnal~QAk~F~ 281 (340)
T COG0552 268 TTGQNALSQAKIFN 281 (340)
T ss_pred ccChhHHHHHHHHH
Confidence 88 3322334554
No 465
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=83.45 E-value=2.5 Score=54.95 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccC-CccEEEEecchHHHHHHHHHHHHHHhC
Q 000916 193 FKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKG-ETCKIVCTQPRRISATSVAERISVERG 260 (1225)
Q Consensus 193 ~r~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~-~~~~IicTQPRRiaAisvAeRVa~Erg 260 (1225)
.|.+++.. ....++|.|..|||||+.+-.-|..-....+ .+-+|+++-.+|-||-.+.+|+....+
T Consensus 8 ~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 8 KQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred HHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 34455543 2345677888899999987766654432222 345788888888889889999876544
No 466
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=83.42 E-value=3 Score=44.35 Aligned_cols=45 Identities=22% Similarity=0.346 Sum_probs=29.3
Q ss_pred EEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHH
Q 000916 207 VLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISV 257 (1225)
Q Consensus 207 vII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~ 257 (1225)
++|.|++|||||+.--||+.+ .+. ++++.-.-+..-..+.+||..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~--~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGG--PVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCC--CeEEEEccCcCCHHHHHHHHH
Confidence 689999999999999898865 222 333322222234567777755
No 467
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=83.35 E-value=3 Score=45.24 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.7
Q ss_pred CeEEEEccCCCchhchHHHHHHHH
Q 000916 205 QVVLISGETGCGKTTQVPQFLLEH 228 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq~ILe~ 228 (1225)
++++|+|+.||||||.+=...+..
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~~~ 52 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGLLT 52 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHHHH
Confidence 589999999999999887655433
No 468
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.23 E-value=0.6 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.8
Q ss_pred HHcCCeEEEEccCCCchhchHHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQ 223 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq 223 (1225)
|..+..++|.|+|||||||.+-.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~ 49 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKL 49 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 56789999999999999998733
No 469
>PRK08233 hypothetical protein; Provisional
Probab=83.19 E-value=0.84 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=17.4
Q ss_pred CCeEEEEccCCCchhchHHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ 224 (1225)
..+|.|.|.+||||||+.-+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L 23 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERL 23 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 368889999999999988443
No 470
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=83.18 E-value=1.4 Score=47.68 Aligned_cols=43 Identities=28% Similarity=0.499 Sum_probs=28.2
Q ss_pred HcCCeEEEEccCCCchhchHHHHHHHHHhc-cCCccEEEEecch
Q 000916 202 DSNQVVLISGETGCGKTTQVPQFLLEHIWS-KGETCKIVCTQPR 244 (1225)
Q Consensus 202 ~~~~VvII~GeTGsGKTTQvPq~ILe~~~~-~~~~~~IicTQPR 244 (1225)
.++..++|.|.||||||+.+=-.++.-+.. ....++++|..|.
T Consensus 36 ~~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 36 KKNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp GGS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred CCCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 455589999999999999887666655442 3456788888775
No 471
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.10 E-value=1.1 Score=52.22 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=25.2
Q ss_pred HHHHHHcCCeEEEEccCCCchhchHHHHH
Q 000916 197 ITSTVDSNQVVLISGETGCGKTTQVPQFL 225 (1225)
Q Consensus 197 Il~aI~~~~VvII~GeTGsGKTTQvPq~I 225 (1225)
+-.+++....++|+|+|||||||.+-..+
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall 164 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALL 164 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHH
Confidence 77789999999999999999999875544
No 472
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=82.94 E-value=0.74 Score=56.09 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.3
Q ss_pred HHcCCeEEEEccCCCchhchHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvP 222 (1225)
+..++++.|+|+.||||||.+=
T Consensus 29 i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 29 LPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred ecCCCEEEEECCCCCCHHHHHh
Confidence 5679999999999999999887
No 473
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=82.83 E-value=2.9 Score=54.51 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=15.3
Q ss_pred CCeEEEEccCCCchhchHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQ 223 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq 223 (1225)
..-+++.|++|||||+..-.
T Consensus 487 ~~giLL~GppGtGKT~laka 506 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKA 506 (733)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34588999999999965433
No 474
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=82.75 E-value=1.8 Score=48.71 Aligned_cols=63 Identities=33% Similarity=0.349 Sum_probs=52.1
Q ss_pred cccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHHhh
Q 000916 457 QHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHME 519 (1225)
Q Consensus 457 ~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 519 (1225)
....++.|||||+|-.|.-+.-..||..|+..+....-|+||...|.=-++++++.+|++|..
T Consensus 74 ~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t 136 (396)
T KOG1710|consen 74 KQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHIT 136 (396)
T ss_pred ccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcccc
Confidence 334578899999988887666666778899999999999999888888899999999988864
No 475
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=82.74 E-value=3.5 Score=51.05 Aligned_cols=136 Identities=20% Similarity=0.232 Sum_probs=77.6
Q ss_pred eEEEEccCCCchhchHHHHHHHHHhccC-CccEEEEecchHHHHHHHHHHHHHHhC--CccCCeEEEEEeecccCCCCcc
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIWSKG-ETCKIVCTQPRRISATSVAERISVERG--ENIGDNIGYKIRLESKGGKHSS 282 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~~~~-~~~~IicTQPRRiaAisvAeRVa~Erg--e~lG~~VGY~IR~es~~s~~t~ 282 (1225)
+++.+ +=|-|||+.+--..+-.++..+ ....|+|+.+++--|..+.+.+..-.. ..+....+..+. ......
T Consensus 25 ~~l~v-~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~~~~~----~~~~~~ 99 (477)
T PF03354_consen 25 VYLEV-PRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRKKPKII----KSNKKE 99 (477)
T ss_pred EEEEE-cCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccchhhhhh----hhhceE
Confidence 44444 6699999988766555544333 346899999999999888876654332 112211111110 011233
Q ss_pred EEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEE-cccc
Q 000916 283 IVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILM-SATL 359 (1225)
Q Consensus 283 I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILM-SATl 359 (1225)
|.+-.+|-+++-+.+++. ..+ - .+.+.+|+||+|+-. .+-+...++.-+..+++..++.. +|..
T Consensus 100 i~~~~~~s~~~~~s~~~~---------~~d-G-~~~~~~i~DE~h~~~--~~~~~~~l~~g~~~r~~pl~~~ISTag~ 164 (477)
T PF03354_consen 100 IEFPKTGSFFKALSSDAD---------SLD-G-LNPSLAIFDELHAHK--DDELYDALESGMGARPNPLIIIISTAGD 164 (477)
T ss_pred EEEcCCCcEEEEEecCCC---------Ccc-C-CCCceEEEeCCCCCC--CHHHHHHHHhhhccCCCceEEEEeCCCC
Confidence 444444444444433321 111 1 245899999999854 33377778887777777655554 4443
No 476
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.73 E-value=3.9 Score=54.04 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=17.1
Q ss_pred eEEEEccCCCchhchHHHHHHHHHhc
Q 000916 206 VVLISGETGCGKTTQVPQFLLEHIWS 231 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvPq~ILe~~~~ 231 (1225)
+++++|+||+|||+.. ..|.+.+++
T Consensus 541 ~~lf~Gp~GvGKt~lA-~~LA~~l~~ 565 (821)
T CHL00095 541 SFLFSGPTGVGKTELT-KALASYFFG 565 (821)
T ss_pred EEEEECCCCCcHHHHH-HHHHHHhcC
Confidence 4689999999999654 333444443
No 477
>PRK05541 adenylylsulfate kinase; Provisional
Probab=82.54 E-value=1 Score=47.67 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=20.4
Q ss_pred HHHcCCeEEEEccCCCchhchHHHH
Q 000916 200 TVDSNQVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 200 aI~~~~VvII~GeTGsGKTTQvPq~ 224 (1225)
....+.+++++|..||||||+.-.+
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l 27 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKAL 27 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHH
Confidence 4456789999999999999988443
No 478
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=82.43 E-value=1.4 Score=48.19 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=25.6
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
|..+.+++|.|++||||||..-|++.+..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999988765
No 479
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=82.21 E-value=4.1 Score=54.62 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=75.9
Q ss_pred EEEEccCCCchhchH---HHHHHHHHhccCCccEEEEecchHHHHHHHHHHHHHHhCCccCCeEEEEEeeccc------C
Q 000916 207 VLISGETGCGKTTQV---PQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLESK------G 277 (1225)
Q Consensus 207 vII~GeTGsGKTTQv---Pq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IR~es~------~ 277 (1225)
=+|-=-||||||.-+ -+.+++. .....|++.--|+.+--++.+-++.-- ..... +. +-++. .
T Consensus 276 G~IWHtqGSGKTlTm~~~A~~l~~~----~~~~~v~fvvDR~dLd~Q~~~~f~~~~-~~~~~-~~---~~~s~~~Lk~~l 346 (962)
T COG0610 276 GYIWHTQGSGKTLTMFKLARLLLEL----PKNPKVLFVVDRKDLDDQTSDEFQSFG-KVAFN-DP---KAESTSELKELL 346 (962)
T ss_pred eEEEeecCCchHHHHHHHHHHHHhc----cCCCeEEEEechHHHHHHHHHHHHHHH-Hhhhh-cc---cccCHHHHHHHH
Confidence 577788999999543 3333333 445688988999998888877664321 11111 11 22221 1
Q ss_pred -CCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccEEEeccccccccchhHHHHHHHHhCcCCCCceEEEEc
Q 000916 278 -GKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMS 356 (1225)
Q Consensus 278 -s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~shVIvDEvHER~~~tD~LL~lLk~ll~~~~~LKlILMS 356 (1225)
.....|+|+|-.-|-..+.... .. ..-..==+||+|||| |+.+. .+-..++..++. --.+.++
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~----------~~-~~~~~~ivvI~DEaH-RSQ~G-~~~~~~~~~~~~---a~~~gFT 410 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDE----------LE-LLKRKNVVVIIDEAH-RSQYG-ELAKLLKKALKK---AIFIGFT 410 (962)
T ss_pred hcCCCcEEEEEecccchhhhccc----------cc-ccCCCcEEEEEechh-hcccc-HHHHHHHHHhcc---ceEEEee
Confidence 1245899999877766554320 00 001111278999999 87665 445556666544 6788888
Q ss_pred ccc
Q 000916 357 ATL 359 (1225)
Q Consensus 357 ATl 359 (1225)
.|.
T Consensus 411 GTP 413 (962)
T COG0610 411 GTP 413 (962)
T ss_pred CCc
Confidence 887
No 480
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=82.21 E-value=1.4 Score=53.48 Aligned_cols=41 Identities=29% Similarity=0.441 Sum_probs=31.5
Q ss_pred cCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHH
Q 000916 203 SNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRI 246 (1225)
Q Consensus 203 ~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRi 246 (1225)
.++.++|.|.||||||+.+++++... ...+ .+++|+-|...
T Consensus 41 ~~~h~~i~g~tGsGKt~~i~~l~~~~-~~~~--~~~vi~D~kg~ 81 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQIRELLASI-RARG--DRAIIYDPNGG 81 (410)
T ss_pred hhccEEEEcCCCCCHHHHHHHHHHHH-HhcC--CCEEEEeCCcc
Confidence 46788999999999999999876543 3332 37889888765
No 481
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.16 E-value=6.7 Score=48.61 Aligned_cols=144 Identities=19% Similarity=0.168 Sum_probs=77.6
Q ss_pred ccCCCchhchHHHHHHHHHhccCCccEEEEecchH-----------HHHHHHHHHHHHHhCCccCCeEEEEEeecccC--
Q 000916 211 GETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRR-----------ISATSVAERISVERGENIGDNIGYKIRLESKG-- 277 (1225)
Q Consensus 211 GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRR-----------iaAisvAeRVa~Erge~lG~~VGY~IR~es~~-- 277 (1225)
-.||||||..+.-.||+..-......-..|-|-.- +++-.+-..+- . .|+++ .-|+--...
T Consensus 4 matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i----~-~~d~~-i~ikkvn~fse 77 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENI----N-INDEN-IEIKKVNNFSE 77 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhh----h-cCCce-eeeeeecccCc
Confidence 47999999999988887643222222333433321 12222221111 1 12221 123332333
Q ss_pred -CCCccEEEEccHHHHHHHHhcCcccccccCCCccccccCCccE-EEeccccccccch-----h---H---HHHHHHHhC
Q 000916 278 -GKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTH-IIVDEIHERDRYS-----D---F---MLAIIRDML 344 (1225)
Q Consensus 278 -s~~t~I~f~T~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~~sh-VIvDEvHER~~~t-----D---~---LL~lLk~ll 344 (1225)
+..-.|.|.|..-|...+... .+|+-.+ .+|.+-.. ++-||+|.-.-.| | . +-..++..+
T Consensus 78 hnd~iei~fttiq~l~~d~~~~------ken~itl-edl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~ 150 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRA------KENAITL-EDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL 150 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhh------ccccccH-hhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH
Confidence 345589999999888777654 2333333 35666664 4569999422111 1 0 112344455
Q ss_pred cCCCCceEEEEccccc--HHHHHhh
Q 000916 345 PSYPHLRLILMSATLD--ADRFSQY 367 (1225)
Q Consensus 345 ~~~~~LKlILMSATld--~~~Fs~y 367 (1225)
..+|+--++.+|||++ ...-.+|
T Consensus 151 ~~nkd~~~lef~at~~k~k~v~~ky 175 (812)
T COG3421 151 EQNKDNLLLEFSATIPKEKSVEDKY 175 (812)
T ss_pred hcCCCceeehhhhcCCccccHHHHh
Confidence 6788888999999995 3334455
No 482
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=82.14 E-value=3.6 Score=43.06 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=20.3
Q ss_pred CCeEEEEccCCCchhchHHHHHHHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQFLLEHI 229 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ILe~~ 229 (1225)
..+++|+|+.||||||.+=...+-.+
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35999999999999998766544433
No 483
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=82.08 E-value=1.5 Score=48.26 Aligned_cols=51 Identities=25% Similarity=0.381 Sum_probs=35.0
Q ss_pred HHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchHHHHHHHHHHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERI 255 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRV 255 (1225)
+..+.+++|.|++|+|||+..-|++.+.+.. +..|-.+.++= ++..+.++.
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~---~~~~l~~~~ 63 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEE---REERILGYA 63 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC---CHHHHHHHH
Confidence 3457899999999999999999998876543 55554444432 234444443
No 484
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=81.93 E-value=0.75 Score=52.00 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.9
Q ss_pred HHcCCeEEEEccCCCchhchH
Q 000916 201 VDSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQv 221 (1225)
|..+.++.|.|+.||||||.+
T Consensus 25 i~~G~i~~iiGpNG~GKSTLL 45 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLL 45 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHH
Confidence 567999999999999999865
No 485
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.84 E-value=3.1 Score=53.98 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCeEEEEccCCCchhchHHHHHHHHHhccCCccEEEEecchH
Q 000916 195 DVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRR 245 (1225)
Q Consensus 195 ~eIl~aI~~~~VvII~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRR 245 (1225)
+.+.+++.++...++.+|||+|||..+--..|......+...+|+++-.+.
T Consensus 20 ~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRTh 70 (705)
T TIGR00604 20 RDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTH 70 (705)
T ss_pred HHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccc
Confidence 457777889999999999999999877666666543333335777665543
No 486
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=81.78 E-value=0.77 Score=49.19 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=19.0
Q ss_pred HHcCCeEEEEccCCCchhchH
Q 000916 201 VDSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQv 221 (1225)
|..++++.|.|+.||||||.+
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl 35 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLL 35 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 568899999999999999976
No 487
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=81.54 E-value=2 Score=51.45 Aligned_cols=76 Identities=32% Similarity=0.394 Sum_probs=61.9
Q ss_pred HHHHHHhhccCCCCcccccccccCCccceeeccCCccchhhhhhhccccchhhccccchhhhhccccCchhHHHHHHHHh
Q 000916 439 DMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQIIKKHM 518 (1225)
Q Consensus 439 ~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~ 518 (1225)
+-.-.+++....+++.|- -|-|-||+++-+|.++....||..|||.+.++..|.||++.+...++-+++++|-+|.
T Consensus 131 eivKyLvE~gad~~Ianr----hGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~g 206 (615)
T KOG0508|consen 131 EIVKYLVEHGADPEIANR----HGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHG 206 (615)
T ss_pred HHHHHHHHcCCCCccccc----CCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCC
Confidence 333445555555655543 3778999999999999999999999999999999999999999999988888877653
No 488
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=81.51 E-value=0.85 Score=44.77 Aligned_cols=21 Identities=48% Similarity=0.528 Sum_probs=15.4
Q ss_pred EEEEccCCCchhchHHHHHHHH
Q 000916 207 VLISGETGCGKTTQVPQFLLEH 228 (1225)
Q Consensus 207 vII~GeTGsGKTTQvPq~ILe~ 228 (1225)
|+|+|.+||||||.. +.|.+.
T Consensus 1 I~i~G~~GsGKtTia-~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA-KELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHH-HHHHHH
T ss_pred CEEECCCCCCHHHHH-HHHHHH
Confidence 679999999999854 334333
No 489
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=81.50 E-value=0.92 Score=48.57 Aligned_cols=21 Identities=19% Similarity=0.563 Sum_probs=17.7
Q ss_pred CCeEEEEccCCCchhchHHHH
Q 000916 204 NQVVLISGETGCGKTTQVPQF 224 (1225)
Q Consensus 204 ~~VvII~GeTGsGKTTQvPq~ 224 (1225)
+.+++|+|+.||||||.+-..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l 22 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAAL 22 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 568999999999999987554
No 490
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.49 E-value=0.79 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.676 Sum_probs=18.8
Q ss_pred HHcCCeEEEEccCCCchhchH
Q 000916 201 VDSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQv 221 (1225)
|..++++.|.|+.||||||.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl 43 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLL 43 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHH
Confidence 468999999999999999965
No 491
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=81.33 E-value=3.3 Score=53.98 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=14.6
Q ss_pred eEEEEccCCCchhchHH
Q 000916 206 VVLISGETGCGKTTQVP 222 (1225)
Q Consensus 206 VvII~GeTGsGKTTQvP 222 (1225)
.+++.|+||||||+..=
T Consensus 490 ~~Lf~GP~GvGKT~lAk 506 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58899999999997663
No 492
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.21 E-value=1.1 Score=45.35 Aligned_cols=16 Identities=50% Similarity=0.706 Sum_probs=13.7
Q ss_pred EEEEccCCCchhchHH
Q 000916 207 VLISGETGCGKTTQVP 222 (1225)
Q Consensus 207 vII~GeTGsGKTTQvP 222 (1225)
|++.|++|||||+.+=
T Consensus 2 vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999997653
No 493
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=81.20 E-value=0.8 Score=50.08 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=18.9
Q ss_pred HHcCCeEEEEccCCCchhchH
Q 000916 201 VDSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQv 221 (1225)
|..++++.|.|+.||||||.+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl 47 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLL 47 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHH
Confidence 468999999999999999866
No 494
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=81.16 E-value=0.82 Score=49.58 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=19.5
Q ss_pred HHcCCeEEEEccCCCchhchHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvP 222 (1225)
|..++++.|.|+.||||||.+=
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAK 44 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5689999999999999998763
No 495
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.03 E-value=0.84 Score=49.66 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.4
Q ss_pred HHcCCeEEEEccCCCchhchHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvP 222 (1225)
|..++++.|.|+.||||||.+=
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~ 44 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIR 44 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 5688999999999999998763
No 496
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=81.01 E-value=0.97 Score=47.81 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=16.6
Q ss_pred CeEEEEccCCCchhchHHH
Q 000916 205 QVVLISGETGCGKTTQVPQ 223 (1225)
Q Consensus 205 ~VvII~GeTGsGKTTQvPq 223 (1225)
++++|+|++||||||..-+
T Consensus 2 ~~~~i~G~sGsGKttl~~~ 20 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDY 20 (179)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5789999999999998754
No 497
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=80.97 E-value=0.84 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=18.7
Q ss_pred HHcCCeEEEEccCCCchhchH
Q 000916 201 VDSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQv 221 (1225)
|..++++.|.|+.||||||.+
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl 44 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLL 44 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 467899999999999999865
No 498
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=80.97 E-value=0.81 Score=49.51 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=18.8
Q ss_pred HHcCCeEEEEccCCCchhchH
Q 000916 201 VDSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQv 221 (1225)
|..++++.|.|+.||||||.+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl 41 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLL 41 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHH
Confidence 467899999999999999866
No 499
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=80.91 E-value=0.85 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.5
Q ss_pred HHcCCeEEEEccCCCchhchHH
Q 000916 201 VDSNQVVLISGETGCGKTTQVP 222 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQvP 222 (1225)
|..++++.|.|+.||||||.+=
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~ 43 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLK 43 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5689999999999999999763
No 500
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=80.90 E-value=0.81 Score=50.15 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=19.1
Q ss_pred HHcCCeEEEEccCCCchhchH
Q 000916 201 VDSNQVVLISGETGCGKTTQV 221 (1225)
Q Consensus 201 I~~~~VvII~GeTGsGKTTQv 221 (1225)
|..++++.|.|+.||||||.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl 43 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLL 43 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHH
Confidence 568999999999999999976
Done!