Query 000916
Match_columns 1225
No_of_seqs 462 out of 2974
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 16:27:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000916.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_685-689//hhsearch_pdb/000916hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 1.0 1 1 950.7 62.5 636 175-994 80-726 (773)
2 2va8_A SSO2462, SKI2-type heli 1.0 1 1 508.3 34.5 540 178-885 19-628 (715)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 488.9 35.8 529 177-884 13-606 (702)
4 2zj8_A DNA helicase, putative 1.0 1 1 450.7 36.9 523 177-883 11-615 (720)
5 3i4u_A ATP-dependent RNA helic 1.0 1 1 391.1 25.2 246 725-995 3-248 (270)
6 3o8b_A HCV NS3 protease/helica 1.0 1 1 353.7 10.5 304 180-694 208-516 (666)
7 2z83_A Helicase/nucleoside tri 1.0 1 1 345.5 11.5 296 196-692 13-313 (459)
8 3l9o_A ATP-dependent RNA helic 1.0 1 1 331.0 25.3 378 184-692 179-597 (1108)
9 2jlq_A Serine protease subunit 1.0 1 1 330.8 18.4 293 196-690 11-309 (451)
10 2whx_A Serine protease/ntpase/ 1.0 1 1 322.1 14.6 303 184-691 169-477 (618)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=1.00 E-value=1 Score=950.68 Aligned_cols=636 Identities=31% Similarity=0.518 Sum_probs=557.7
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 15568999963389976999999999971994999836998355059999999876049950999955438999999999
Q 000916 175 DANLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAER 254 (1225)
Q Consensus 175 ~~~~~~~~~~R~~LPi~~~r~~Il~~i~~~~VviI~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeR 254 (1225)
++.+.++++.|..||++.++++|+.++..+++++|+|+|||||||++|+++++..+..+...+|+|++|+|++|.++++|
T Consensus 80 ~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~ 159 (773)
T 2xau_A 80 TPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQR 159 (773)
T ss_dssp CHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 98999999986618959999999999967983999889988999999999997400158996588618569999999999
Q ss_pred HHHHHCCCCCCEEEEEEEECCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHH
Q ss_conf 99994775588377998415468997319998308999999822844100027995322347740899616310244302
Q 000916 255 ISVERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSD 334 (1225)
Q Consensus 255 Va~Erge~lG~~VGY~IRles~~s~~t~I~fcT~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~ishVIIDEvHER~~~tD 334 (1225)
++.+++..+|..|||.++++...+..+.|+++|+|+|++.+..+ ..+.++++|||||+|+|.+++|
T Consensus 160 l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~--------------~~l~~~~~lIlDEah~R~ld~d 225 (773)
T 2xau_A 160 VAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED--------------HDLSRYSCIILDEAHERTLATD 225 (773)
T ss_dssp HHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS--------------TTCTTEEEEEECSGGGCCHHHH
T ss_pred HHHHHCCCHHHEECCEECCCCCCCCCCCEEEECHHHHHHHHHHC--------------CCCCCCCEEEECCCCCCCCCHH
T ss_conf 99984884532566222445455889877998999999997428--------------4435778899547010364558
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEECCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 89999998675799836999714566888973418999582389301326998423687631023444554345689999
Q 000916 335 FMLAIIRDMLPSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNED 414 (1225)
Q Consensus 335 ~LL~lLr~ll~~~~~LklILMSATld~~~fs~YF~~~pvi~Ipgr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~~~~~ 414 (1225)
+++.++++++..++++++|+||||++.+.|++||+++|++.++|++|||+++|++... .
T Consensus 226 ~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~--------------------~- 284 (773)
T 2xau_A 226 ILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQ--------------------R- 284 (773)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCC--------------------S-
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC--------------------H-
T ss_conf 9999999998748786299994335689999984689854536865553889806882--------------------4-
Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCHHHCCC
Q ss_conf 61034432216999873115246878999762049977323334456885201003687530145642015320000013
Q 000916 415 PELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKD 494 (1225)
Q Consensus 415 ~~l~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~ 494 (1225)
.+.+
T Consensus 285 --------~~~~-------------------------------------------------------------------- 288 (773)
T 2xau_A 285 --------DYLD-------------------------------------------------------------------- 288 (773)
T ss_dssp --------CHHH--------------------------------------------------------------------
T ss_pred --------HHHH--------------------------------------------------------------------
T ss_conf --------5999--------------------------------------------------------------------
Q ss_pred CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
Q ss_conf 30121002236804699999997664322467899988653105910001899999999987039998299995999999
Q 000916 495 GRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDI 574 (1225)
Q Consensus 495 ~~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~li~~I~~~~~~G~ILVFLPG~~eI 574 (1225)
.+...+..++....+|.||||+||+.+|
T Consensus 289 ----------------------------------------------------~~l~~l~~~~~~~~~g~iLVF~~~~~~i 316 (773)
T 2xau_A 289 ----------------------------------------------------SAIRTVLQIHATEEAGDILLFLTGEDEI 316 (773)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHSCSCEEEEECSCHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHCCCCCEEEECCCHHHH
T ss_conf ----------------------------------------------------9999999999726899989989989999
Q ss_pred HHHHHHHHCCC--C--CCCCCCEEEEEECCCCCHHHHHHHHCCCC-----CCCCEEEEECCHHCCCCCCCCEEEEEECCC
Q ss_conf 99999997099--9--99999639997359999898998725999-----998259982320000467797489993898
Q 000916 575 NKTRDRLLANP--F--FRDTSKFVIIPLHSMVPSVQQKKVFKRPP-----PGCRKIILSTNIAETAITIDDVVYVIDSGR 645 (1225)
Q Consensus 575 ~~l~~~L~~~~--~--~~~~~~~~il~LHS~l~~~eQ~~vf~~~p-----~G~rKIILATNIAEtSITI~dV~yVIDsG~ 645 (1225)
+.+.+.|.... + ......+.+.+|||+|+.++|.++|+.++ .|.+||||||||||+|||||+|+||||+|+
T Consensus 317 ~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~ 396 (773)
T 2xau_A 317 EDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGF 396 (773)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSE
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCCCCCEEEEEECCC
T ss_conf 99999999988763134567975999807899999999998526434578883499996767984767687379994797
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCHHHH-HCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 6431125899831134432478349863074698754079972688788-229999998554457045877874118898
Q 000916 646 MKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRA-ASLPDFQVPEIKRIPIEELCLQVKLLDPNC 724 (1225)
Q Consensus 646 ~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~pG~CyrLys~~~~-~~l~~~~~PEIlR~pL~~l~L~iK~l~~~~ 724 (1225)
+|++.||+.++++.|.+.|+|++++.||+|||||.++|.||+||++..+ +.|.++..|||+|.+|+.+||++|.++. .
T Consensus 397 ~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi-~ 475 (773)
T 2xau_A 397 SKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGI-D 475 (773)
T ss_dssp EEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTC-C
T ss_pred CCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-C
T ss_conf 221222566683203300179999986534447899987999963788401230168975334758999999998499-9
Q ss_pred CHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 74454211279994789999999999718777787432001101355576243699999842698269999963068888
Q 000916 725 NIEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYRD 804 (1225)
Q Consensus 725 ~i~~FL~~aldPP~~~aI~~Ai~~L~~lgALd~~e~LT~LG~~La~LPvdP~lgKmLi~g~~~~Cldp~ltIaA~ls~~~ 804 (1225)
++..| .+++||+.++|..|++.|..+||||.+++||+||++|+.||+||++||||+.|+.|+|++++++|||+|++++
T Consensus 476 ~~~~f--~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~ 553 (773)
T 2xau_A 476 DLVHF--DFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN 553 (773)
T ss_dssp CGGGC--CCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCC
T ss_pred CHHHC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
T ss_conf 72324--3557985999999999999768765578868305642433688899999986212474168999999603688
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 86678992399999999998732106987189999999999999623936-99998850013479979999999999999
Q 000916 805 PFTLPISPNEKKRATAAKFELASLYGGQSDQLAVIAAFECWKNAKQRGQE-AWFCSQYFVSSGVMNMLLGMRKQLQTELI 883 (1225)
Q Consensus 805 pF~~p~~~~~~~~~~~~k~~~a~~~~~~SDhl~ll~af~~w~~~~~~~~~-~~fC~~nfLs~~tL~~i~~lR~QL~~~L~ 883 (1225)
||+.|.+ .+.++..+|..|+ +..|||++++++|++|......+.. ..||++|||++.+|+++.++|.||.++|.
T Consensus 554 ~f~~~~~--~~~~~~~~~~~f~---~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~ 628 (773)
T 2xau_A 554 VFIRPTK--DKKRADDAKNIFA---HPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMN 628 (773)
T ss_dssp CBCCCTT--CHHHHHHHHHTTC---CTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHH--HHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 5518747--8999999998506---8898599999999999870222106899999838899999999999999999987
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 86998889887888899838999999850274322534888888607981179489989899687667788899996899
Q 000916 884 KNGFIPEDVSSCSHNARVPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVY 963 (1225)
Q Consensus 884 ~~gfi~~~~~~~n~ns~~~~lika~L~aGlYPnVArv~~~~~~~~~~v~t~~~~~V~lHPsSvl~~~~~~~~~~~~wivy 963 (1225)
+.||..... .. .+..++..|+++||+|||||||+.... +..+....++..|+|||+|++.. .++||||
T Consensus 629 ~~~~~~~~~-~~-~~~~~~~~i~~~l~~g~~~~~a~~~~~---~~~y~~~~~~~~~~ihp~s~l~~-------~~~~~v~ 696 (773)
T 2xau_A 629 RYNLELNTT-DY-ESPKYFDNIRKALASGFFMQVAKKRSG---AKGYITVKDNQDVLIHPSTVLGH-------DAEWVIY 696 (773)
T ss_dssp HTTCCCCCC-CT-TSTTHHHHHHHHHHHHHTTSEEEECCC-----CEEETTTCCEEEECTTCCCCT-------TCSEEEE
T ss_pred HCCCCCCCC-CC-CCHHHHHHHHHHHHHHCHHHHEEECCC---CCCCEEEECCCEEEECCCCCCCC-------CCCEEEE
T ss_conf 428875777-77-732069999999998673755143467---87415733797799889864679-------9898999
Q ss_pred EEECCCCCCEEEEECCCCCHHHHHHHCCCCC
Q ss_conf 7300346731885225449266985213332
Q 000916 964 DEITRGDGGMHVRNCTVVGPLPLLLLATEIA 994 (1225)
Q Consensus 964 ~E~~~t~~k~~ir~~T~V~p~~LlLfgg~~~ 994 (1225)
+|++.| ++.|||++|+|+|.||..+++.+.
T Consensus 697 ~e~~~t-~~~~~~~~~~i~~~~l~~~~~~~~ 726 (773)
T 2xau_A 697 NEFVLT-SKNYIRTVTSVRPEWLIEIAPAYY 726 (773)
T ss_dssp EEEEES-SSEEEEEEEECCHHHHHHHCTTTS
T ss_pred EEEECC-CHHHEEECCCCCHHHHHHHHHHHE
T ss_conf 986202-442424416079999999878762
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=508.34 Aligned_cols=540 Identities=15% Similarity=0.117 Sum_probs=384.7
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHH-HHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 68999963389976999999999-97199499983699835505999999987604995099995543899999999999
Q 000916 178 LRQIVEERSKLPISSFKDVITST-VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERIS 256 (1225)
Q Consensus 178 ~~~~~~~R~~LPi~~~r~~Il~~-i~~~~VviI~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa 256 (1225)
+.+....+.--..+.+|.+++.. +.++++++|+|+||||||+++++++++.....+ .+++|++|+|.+|.++++++.
T Consensus 19 ~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~--~~il~i~P~r~La~q~~~~~~ 96 (715)
T 2va8_A 19 VIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG--GKAIYVTPLRALTNEKYLTFK 96 (715)
T ss_dssp HHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--SEEEEECSCHHHHHHHHHHHG
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH
T ss_conf 999998679987999999999998648994899848987599999999999999779--849999085999999999998
Q ss_pred --HHHCCCCCCEEEEEEEECCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHH
Q ss_conf --994775588377998415468997319998308999999822844100027995322347740899616310244302
Q 000916 257 --VERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSD 334 (1225)
Q Consensus 257 --~Erge~lG~~VGY~IRles~~s~~t~I~fcT~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~ishVIIDEvHER~~~tD 334 (1225)
.+.|..+|..+||..+.+... ..++|+|||+|.|++.+..++ ..+.++++|||||+|+..- .
T Consensus 97 ~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~-------------~~l~~~~~vIiDE~H~l~~-~- 160 (715)
T 2va8_A 97 DWELIGFKVAMTSGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRP-------------EWLNEVNYFVLDELHYLND-P- 160 (715)
T ss_dssp GGGGGTCCEEECCSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCC-------------GGGGGEEEEEECSGGGGGC-T-
T ss_pred HHHCCCCEEEEEECCCCCCHHHC-CCCCEEEECHHHHHHHHHCCH-------------HHHHCCCEEEEECHHHCCC-C-
T ss_conf 76527988999848977762013-799999985899999996785-------------5764369899953555278-6-
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCC-CHHHHHHHHCCCCEEECCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 8999999867579983699971456-688897341899958238930132699842368763102344455434568999
Q 000916 335 FMLAIIRDMLPSYPHLRLILMSATL-DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNE 413 (1225)
Q Consensus 335 ~LL~lLr~ll~~~~~LklILMSATl-d~~~fs~YF~~~pvi~Ipgr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~~~~ 413 (1225)
.....++.++.+.+++++|+||||+ |++.|++||+ ++++..+++++|++.++..+......+
T Consensus 161 ~~~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~---------------- 223 (715)
T 2va8_A 161 ERGPVVESVTIRAKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEY---------------- 223 (715)
T ss_dssp TTHHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEE----------------
T ss_pred CCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCCCCCCE----------------
T ss_conf 622299999986536728997178799999999849-974579999887468888358766540----------------
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCHHHCC
Q ss_conf 96103443221699987311524687899976204997732333445688520100368753014564201532000001
Q 000916 414 DPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAK 493 (1225)
Q Consensus 414 ~~~l~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~ 493 (1225)
...|.. + ...
T Consensus 224 ---------------------------------------~~~~~~---~-----------~~~----------------- 233 (715)
T 2va8_A 224 ---------------------------------------NVIFKD---N-----------TTK----------------- 233 (715)
T ss_dssp ---------------------------------------EEEETT---S-----------CEE-----------------
T ss_pred ---------------------------------------EEECCC---C-----------HHH-----------------
T ss_conf ---------------------------------------465276---0-----------443-----------------
Q ss_pred CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHH
Q ss_conf 33012100223680469999999766432246789998865310591000189999999998703999829999599999
Q 000916 494 DGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWED 573 (1225)
Q Consensus 494 ~~~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~li~~I~~~~~~G~ILVFLPG~~e 573 (1225)
.+ . ... .+..++..+. ..+|.+|||+|++.+
T Consensus 234 ----~~--~---~~~--------------------------------------~~~~~~~~~~--~~~~~~LVF~~s~~~ 264 (715)
T 2va8_A 234 ----KV--H---GDD--------------------------------------AIIAYTLDSL--SKNGQVLVFRNSRKM 264 (715)
T ss_dssp ----EE--E---SSS--------------------------------------HHHHHHHHHH--TTTCCEEEECSSHHH
T ss_pred ----HC--C---CCH--------------------------------------HHHHHHHHHH--HCCCCEEEEECCHHH
T ss_conf ----21--3---443--------------------------------------8999999998--669977999798899
Q ss_pred HHHHHHHHHCCCC---CCC---------------C-----------CCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 9999999970999---999---------------9-----------9639997359999898998725999998259982
Q 000916 574 INKTRDRLLANPF---FRD---------------T-----------SKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILS 624 (1225)
Q Consensus 574 I~~l~~~L~~~~~---~~~---------------~-----------~~~~il~LHS~l~~~eQ~~vf~~~p~G~rKIILA 624 (1225)
++.+.+.|..... +.. . -.+.|.++||+|+.++|..+++.++.|.+|||+|
T Consensus 265 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlva 344 (715)
T 2va8_A 265 AESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVA 344 (715)
T ss_dssp HHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999998765428867789999999986634553229999999668788789999999999999998699859997
Q ss_pred CCHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC---CEEEEEECCHHH-H----HC
Q ss_conf 320000467797489993898643112589983113443247834986307469875---407997268878-8----22
Q 000916 625 TNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ---AGICYHLYSQLR-A----AS 696 (1225)
Q Consensus 625 TNIAEtSITI~dV~yVIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~---pG~CyrLys~~~-~----~~ 696 (1225)
||++|+|||||++.+|||+ ...||+..+.. ..|+|.+++.||.|||||.+ +|.||+||+... + +.
T Consensus 345 T~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~ 417 (715)
T 2va8_A 345 TPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKK 417 (715)
T ss_dssp CGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHH
T ss_pred CHHHHCCCCCCCEEEEEEC----CEECCCCCCCC---CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 8087661688854999918----75644667778---7759999999984242799888875699996780679999999
Q ss_pred CCCCCCCCCCCCCHHH------HHHHHHHCCCC---CCHHHHHHH-CCC-CCCHHHHHHHHHHHHHCCCCCCCC---CCC
Q ss_conf 9999998554457045------87787411889---874454211-279-994789999999999718777787---432
Q 000916 697 LPDFQVPEIKRIPIEE------LCLQVKLLDPN---CNIEDFLQK-TLD-PPVSVTIRNAIIVLQDIGALSLDE---KVT 762 (1225)
Q Consensus 697 l~~~~~PEIlR~pL~~------l~L~iK~l~~~---~~i~~FL~~-ald-PP~~~aI~~Ai~~L~~lgALd~~e---~LT 762 (1225)
+. ...||+.+.+|.. .+|..+.++.. .++.+|+.. ++. +|+...+..|++.|..+|||+.++ .+|
T Consensus 418 ~l-~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t 496 (715)
T 2va8_A 418 YV-LSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALT 496 (715)
T ss_dssp TT-SSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEEC
T ss_pred HH-CCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEECCCEEEEC
T ss_conf 97-08998735337866679999999985156688999999998507876426388999999998884976669868667
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHC---CCHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHH-CC--CC---
Q ss_conf 0011013555762436999998426---98269999963068-888866789923999999999987321-06--98---
Q 000916 763 ELGEKLGCLSVHPLMSKMLFFAILM---DCLDPALTLACASD-YRDPFTLPISPNEKKRATAAKFELASL-YG--GQ--- 832 (1225)
Q Consensus 763 ~LG~~La~LPvdP~lgKmLi~g~~~---~Cldp~ltIaA~ls-~~~pF~~p~~~~~~~~~~~~k~~~a~~-~~--~~--- 832 (1225)
+||++++.+|++|+++||++.+... .|...++.|+|+.+ +.++|+.| +++......-...... .. ..
T Consensus 497 ~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~---~e~~~l~~~~~~~~~~~~~~~~~~~~ 573 (715)
T 2va8_A 497 NFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGR---NEEEELIELLEDLDCELLIEEPYEED 573 (715)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCH---HHHHHHHHHHTTCSSCCSSCCCSSHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCH---HHHHHHHHHHHHCCHHHCCCCCCCCC
T ss_conf 689999997489867999999865425787899999952684334576486---78999999998521111136665431
Q ss_pred --C---CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf --7---1899999999999996239369999885001347997999999999999986
Q 000916 833 --S---DQLAVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIKN 885 (1225)
Q Consensus 833 --S---Dhl~ll~af~~w~~~~~~~~~~~fC~~nfLs~~tL~~i~~lR~QL~~~L~~~ 885 (1225)
. .|+-..-+.++|.. +.....+|.++.+...-|..+.+....|...+.++
T Consensus 574 ~~~~~~~~~k~~~ll~~~~~---~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i 628 (715)
T 2va8_A 574 EYSLYINALKVALIMKDWMD---EVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHL 628 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02345777999999999984---99878999997898244999999999999999999
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=488.93 Aligned_cols=529 Identities=19% Similarity=0.180 Sum_probs=383.1
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 56899996338997699999999997199499983699835505999999987604995099995543899999999999
Q 000916 177 NLRQIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERIS 256 (1225)
Q Consensus 177 ~~~~~~~~R~~LPi~~~r~~Il~~i~~~~VviI~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa 256 (1225)
.+.+....+.--..+.+|.+++..+.++++++|+++||||||+++++++++.... ..+++|++|+|.+|.++++++.
T Consensus 13 ~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~ 89 (702)
T 2p6r_A 13 YAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFK 89 (702)
T ss_dssp HHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHH---CCCEEEEECCHHHHHHHHHHHH
T ss_conf 9999998689988999999999998389968998689617999999999999986---8959999370999999999999
Q ss_pred --HHHCCCCCCEEEEEEEECCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC-----C
Q ss_conf --994775588377998415468997319998308999999822844100027995322347740899616310-----2
Q 000916 257 --VERGENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHE-----R 329 (1225)
Q Consensus 257 --~Erge~lG~~VGY~IRles~~s~~t~I~fcT~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~ishVIIDEvHE-----R 329 (1225)
.+.|..+|..+|+..+.+... ..++|+|||+|.|++.+..+. ..+.++++|||||+|+ |
T Consensus 90 ~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~-------------~~l~~~~~vIiDE~H~l~~~~r 155 (702)
T 2p6r_A 90 KWEKIGLRIGISTGDYESRDEHL-GDCDIIVTTSEKADSLIRNRA-------------SWIKAVSCLVVDEIHLLDSEKR 155 (702)
T ss_dssp TTTTTTCCEEEECSSCBCCSSCS-TTCSEEEEEHHHHHHHHHTTC-------------SGGGGCCEEEETTGGGGGCTTT
T ss_pred HHHHCCCEEEEEECCCCCCHHHC-CCCCEEEECHHHHHHHHHCCH-------------HHHHHCCEEEEEEEEECCCCCC
T ss_conf 77704988999838877664352-699999989899999997575-------------5776259898850255478776
Q ss_pred CCCHHHHHHHHHHHCCCCCCCEEEEECCCC-CHHHHHHHHCCCCEEECCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCC
Q ss_conf 443028999999867579983699971456-6888973418999582389301326998423687631023444554345
Q 000916 330 DRYSDFMLAIIRDMLPSYPHLRLILMSATL-DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASL 408 (1225)
Q Consensus 330 ~~~tD~LL~lLr~ll~~~~~LklILMSATl-d~~~fs~YF~~~pvi~Ipgr~~pV~~~yLedil~~~~~~~~~~~~~~~~ 408 (1225)
+...+.++..++.. ++++++|+||||+ +.+.|++||+ ++++..+++++|++.++.... . .
T Consensus 156 ~~~~~~ll~~l~~~---~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~--------~--~----- 216 (702)
T 2p6r_A 156 GATLEILVTKMRRM---NKALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEG--------T--L----- 216 (702)
T ss_dssp HHHHHHHHHHHHHH---CTTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSS--------E--E-----
T ss_pred CCHHHHHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECC--------E--E-----
T ss_conf 52799999999843---867659997887689999999848-972368887766468886178--------2--3-----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCC
Q ss_conf 68999961034432216999873115246878999762049977323334456885201003687530145642015320
Q 000916 409 IVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADC 488 (1225)
Q Consensus 409 ~~~~~~~~l~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~ 488 (1225)
.+. .+...
T Consensus 217 ----------------------------------------------~~~------------~~~~~-------------- 224 (702)
T 2p6r_A 217 ----------------------------------------------ELF------------DGAFS-------------- 224 (702)
T ss_dssp ----------------------------------------------EEE------------ETTEE--------------
T ss_pred ----------------------------------------------ECC------------CCCHH--------------
T ss_conf ----------------------------------------------105------------76301--------------
Q ss_pred HHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0000133012100223680469999999766432246789998865310591000-189999999998703999829999
Q 000916 489 QLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELI-DLVLIEQLLRKICMDSEDGAILVF 567 (1225)
Q Consensus 489 ~~~~~~~~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~i-d~~Li~~li~~I~~~~~~G~ILVF 567 (1225)
. . ..+ -++++.+.+ ..+|.+|||
T Consensus 225 ~---------------------------------------------~-----~~~~~~~~~~~~~------~~~~~~LVF 248 (702)
T 2p6r_A 225 T---------------------------------------------S-----RRVKFEELVEECV------AENGGVLVF 248 (702)
T ss_dssp E---------------------------------------------E-----EECCHHHHHHHHH------HTTCCEEEE
T ss_pred H---------------------------------------------H-----HHHHHHHHHHHHH------HCCCCEEEE
T ss_conf 4---------------------------------------------4-----4546999999999------669978998
Q ss_pred CCCHHHHHHHHHHHHCC--CCCCCCC---------------------CEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 59999999999999709--9999999---------------------639997359999898998725999998259982
Q 000916 568 LPGWEDINKTRDRLLAN--PFFRDTS---------------------KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILS 624 (1225)
Q Consensus 568 LPG~~eI~~l~~~L~~~--~~~~~~~---------------------~~~il~LHS~l~~~eQ~~vf~~~p~G~rKIILA 624 (1225)
+|++.+++.+.+.|... .+..... .+.+.++||+|+.++|..+++.++.|.+|||+|
T Consensus 249 ~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlva 328 (702)
T 2p6r_A 249 ESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVA 328 (702)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 38878999999999999876469588999998624553219999998469288669999999999999998799849997
Q ss_pred CCHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC---CEEEEEECCHHHHHCCC---
Q ss_conf 320000467797489993898643112589983113443247834986307469875---40799726887882299---
Q 000916 625 TNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ---AGICYHLYSQLRAASLP--- 698 (1225)
Q Consensus 625 TNIAEtSITI~dV~yVIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~---pG~CyrLys~~~~~~l~--- 698 (1225)
||++|+|||||++.+|||+ ...|| +. ..|+|.+++.||.|||||.+ +|.||++++...++.+.
T Consensus 329 T~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~ 397 (702)
T 2p6r_A 329 TPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRY 397 (702)
T ss_dssp CSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTT
T ss_pred CCHHHCCCCCCCEEEEECC----CEEEC---CC----CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 8388665788733999847----62307---87----7758999999984332799999873699995573189999999
Q ss_pred CCCCCCCCCCCHHH------HHHHHHHCCCCC---CHHHHHHH-----CCCCCCHHHHHHHHHHHHHCCCCCCC--CCCC
Q ss_conf 99998554457045------877874118898---74454211-----27999478999999999971877778--7432
Q 000916 699 DFQVPEIKRIPIEE------LCLQVKLLDPNC---NIEDFLQK-----TLDPPVSVTIRNAIIVLQDIGALSLD--EKVT 762 (1225)
Q Consensus 699 ~~~~PEIlR~pL~~------l~L~iK~l~~~~---~i~~FL~~-----aldPP~~~aI~~Ai~~L~~lgALd~~--e~LT 762 (1225)
-+..||+.+.+|.. .+|.....+... ++.+|+.. ..++|..+.+..|++.|..+|+++.+ ..+|
T Consensus 398 l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t 477 (702)
T 2p6r_A 398 IFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPT 477 (702)
T ss_dssp TSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEEC
T ss_pred HCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEECCC
T ss_conf 60899884651686055899999999717788899999999850677750178999999999999988594289906648
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHH-HHHHHHCCCCC-----
Q ss_conf 0011013555762436999998426--98269999963068-888866789923999999999-98732106987-----
Q 000916 763 ELGEKLGCLSVHPLMSKMLFFAILM--DCLDPALTLACASD-YRDPFTLPISPNEKKRATAAK-FELASLYGGQS----- 833 (1225)
Q Consensus 763 ~LG~~La~LPvdP~lgKmLi~g~~~--~Cldp~ltIaA~ls-~~~pF~~p~~~~~~~~~~~~k-~~~a~~~~~~S----- 833 (1225)
+||++++.+|++|+.+||++.+... .|...++.|.|+.+ +.+.++.+.+ ++-.+....+ ..+.....-..
T Consensus 478 ~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (702)
T 2p6r_A 478 KLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDW 556 (702)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 6999999985789899999997430468789999995377444457778765-999999986546666786300001234
Q ss_pred --CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf --189999999999999623936999988500134799799999999999998
Q 000916 834 --DQLAVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIK 884 (1225)
Q Consensus 834 --Dhl~ll~af~~w~~~~~~~~~~~fC~~nfLs~~tL~~i~~lR~QL~~~L~~ 884 (1225)
.|+-..-+.++|.. +......|.++.+...-++.+.+.-..|...+.+
T Consensus 557 ~~~~~k~~~lL~~~~~---~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~ 606 (702)
T 2p6r_A 557 FLSEVKTALCLKDWIE---EKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNR 606 (702)
T ss_dssp HHHHHHHHHHHHHHHT---TCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 5666999999999982---7986889988577677599999999999999999
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=450.68 Aligned_cols=523 Identities=16% Similarity=0.130 Sum_probs=363.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHH-HHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 568999963389976999999999-9719949998369983550599999998760499509999554389999999999
Q 000916 177 NLRQIVEERSKLPISSFKDVITST-VDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERI 255 (1225)
Q Consensus 177 ~~~~~~~~R~~LPi~~~r~~Il~~-i~~~~VviI~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRV 255 (1225)
.+.+....+.-...+.+|.+++.. +.++++++|+|+||||||+++++++++.....+ .+++|++|+|.+|.++++++
T Consensus 11 ~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~--~~~l~i~P~raLa~q~~~~~ 88 (720)
T 2zj8_A 11 RIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG--GKAVYIVPLKALAEEKFQEF 88 (720)
T ss_dssp HHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC--SEEEEECSSGGGHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEECCCHHHHHHHHHHH
T ss_conf 9999998779988999999999998557994899869963799999999999998679--98999859699999999999
Q ss_pred HHHHCCCCCCEEEEEEE---ECCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-----
Q ss_conf 99947755883779984---1546899731999830899999982284410002799532234774089961631-----
Q 000916 256 SVERGENIGDNIGYKIR---LESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIH----- 327 (1225)
Q Consensus 256 a~Erge~lG~~VGY~IR---les~~s~~t~I~fcT~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~ishVIIDEvH----- 327 (1225)
. .. +..|..||..+. .+.+....+.|+|||+|.|++.+..+. ..+.++++|||||+|
T Consensus 89 ~-~l-~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~-------------~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 89 Q-DW-EKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS-------------SWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp G-GG-GGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTC-------------TTGGGEEEEEEETGGGGGCT
T ss_pred H-HH-HHCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCH-------------HHHHCCCEEEEECCCCCCCC
T ss_conf 9-88-735977999638977641214799999988899999997571-------------46652798999898556787
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCEEEEECCCC-CHHHHHHHHCCCCEEECCCCCCCEEEEEEHHHHHHHHHCCCCCCCCC
Q ss_conf 02443028999999867579983699971456-68889734189995823893013269984236876310234445543
Q 000916 328 ERDRYSDFMLAIIRDMLPSYPHLRLILMSATL-DADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSA 406 (1225)
Q Consensus 328 ER~~~tD~LL~lLr~ll~~~~~LklILMSATl-d~~~fs~YF~~~pvi~Ipgr~~pV~~~yLedil~~~~~~~~~~~~~~ 406 (1225)
+|....+.++..++ +++++|+||||+ |++.|++||+ ++++..+++++|++.++..+. .
T Consensus 154 ~r~~~~~~ll~~l~------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~--------~------ 212 (720)
T 2zj8_A 154 DRGATLEVILAHML------GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQG--------F------ 212 (720)
T ss_dssp TTHHHHHHHHHHHB------TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETT--------E------
T ss_pred CCCHHHHHHHHHHH------CCCEEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECC--------E------
T ss_conf 64479999999864------07769997588689999999829-860378988876368897578--------1------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCC
Q ss_conf 45689999610344322169998731152468789997620499773233344568852010036875301456420153
Q 000916 407 SLIVPNEDPELTEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGA 486 (1225)
Q Consensus 407 ~~~~~~~~~~l~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~ 486 (1225)
..|.. +...
T Consensus 213 -----------------------------------------------~~~~~---~~~~--------------------- 221 (720)
T 2zj8_A 213 -----------------------------------------------VTWED---GSID--------------------- 221 (720)
T ss_dssp -----------------------------------------------EEETT---SCEE---------------------
T ss_pred -----------------------------------------------EECCC---CCHH---------------------
T ss_conf -----------------------------------------------31165---3200---------------------
Q ss_pred CCHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 20000013301210022368046999999976643224678999886531059100018999999999870399982999
Q 000916 487 DCQLKAKDGRTALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILV 566 (1225)
Q Consensus 487 ~~~~~~~~~~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~li~~I~~~~~~G~ILV 566 (1225)
. . ..-+.++.+++ ..++.+||
T Consensus 222 ------~---------------------------------------------~--~~~~~~~~~~~------~~~~~~LV 242 (720)
T 2zj8_A 222 ------R---------------------------------------------F--SSWEELVYDAI------RKKKGALI 242 (720)
T ss_dssp ------E---------------------------------------------C--SSTTHHHHHHH------HTTCCEEE
T ss_pred ------H---------------------------------------------H--HHHHHHHHHHH------HCCCCEEE
T ss_conf ------0---------------------------------------------1--69999999998------67998899
Q ss_pred ECCCHHHHHHHHHHHHCCC--CCCC------------------------CCCEEEEEECCCCCHHHHHHHHCCCCCCCCE
Q ss_conf 9599999999999997099--9999------------------------9963999735999989899872599999825
Q 000916 567 FLPGWEDINKTRDRLLANP--FFRD------------------------TSKFVIIPLHSMVPSVQQKKVFKRPPPGCRK 620 (1225)
Q Consensus 567 FLPG~~eI~~l~~~L~~~~--~~~~------------------------~~~~~il~LHS~l~~~eQ~~vf~~~p~G~rK 620 (1225)
|++++.+++.+...|.... +... .-.+.+.++|++|+.++|..+++.++.|.++
T Consensus 243 F~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~ 322 (720)
T 2zj8_A 243 FVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK 322 (720)
T ss_dssp ECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSC
T ss_pred EECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCE
T ss_conf 96587999999999999998745906689999999987516650889999851946324899999999999999779975
Q ss_pred EEEECCHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC---CEEEEEECCHHH----
Q ss_conf 9982320000467797489993898643112589983113443247834986307469875---407997268878----
Q 000916 621 IILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ---AGICYHLYSQLR---- 693 (1225)
Q Consensus 621 IILATNIAEtSITI~dV~yVIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~---pG~CyrLys~~~---- 693 (1225)
||+|||++|+|||||++.+||+.+. .|| ..+ ..|+|.+++.||.|||||.+ +|.||.+|+...
T Consensus 323 vlvaT~~l~~Gvdip~~~~VI~~~~----~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~ 392 (720)
T 2zj8_A 323 AVVATPTLSAGINTPAFRVIIRDIW----RYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREV 392 (720)
T ss_dssp EEEECSTTGGGCCCCBSEEEECCSE----ECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHH
T ss_pred EEEECCHHHCCCCCCCEEEEECCCE----EEC-CCC-----CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHH
T ss_conf 9998818666288885289984872----406-888-----760899999998754489988887669999667109999
Q ss_pred HHCCCCCCCCCCCCCC-----HHHHHHHHHHCCCCC---CHHHHHHHCC-------CCCCHHHHHHHHHHHHHCCCCC-C
Q ss_conf 8229999998554457-----045877874118898---7445421127-------9994789999999999718777-7
Q 000916 694 AASLPDFQVPEIKRIP-----IEELCLQVKLLDPNC---NIEDFLQKTL-------DPPVSVTIRNAIIVLQDIGALS-L 757 (1225)
Q Consensus 694 ~~~l~~~~~PEIlR~p-----L~~l~L~iK~l~~~~---~i~~FL~~al-------dPP~~~aI~~Ai~~L~~lgALd-~ 757 (1225)
++.+.....+++.... |...++.....+... ++.+|+.... ++|..+.+..|++.|...|+|+ .
T Consensus 393 ~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~ 472 (720)
T 2zj8_A 393 MNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEIS 472 (720)
T ss_dssp HHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEC
T ss_conf 99996189987176568604399999999971778899999999982768774364578999999999999988793577
Q ss_pred CC---CCCCCCCCCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHHH---
Q ss_conf 87---4320011013555762436999998426----98269999963068-8888667899239999999999873---
Q 000916 758 DE---KVTELGEKLGCLSVHPLMSKMLFFAILM----DCLDPALTLACASD-YRDPFTLPISPNEKKRATAAKFELA--- 826 (1225)
Q Consensus 758 ~e---~LT~LG~~La~LPvdP~lgKmLi~g~~~----~Cldp~ltIaA~ls-~~~pF~~p~~~~~~~~~~~~k~~~a--- 826 (1225)
++ .+|+||+.++.+|++|..+||++.+... .|...+|+|+|+++ +.+.|+.+ +++......-....
T Consensus 473 ~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~---~e~~~l~~~~~~~~~~~ 549 (720)
T 2zj8_A 473 LEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSK---REFERLEEEYYEFKDRL 549 (720)
T ss_dssp TTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCH---HHHHHHHHHHHHHGGGC
T ss_pred CCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCH---HHHHHHHHHHHHCCCCC
T ss_conf 898275576999999973899999999999876425898889999750585321266377---78999999998563201
Q ss_pred --HH-CCC------CC---CHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf --21-069------87---18999999999999962393699998850013479979999999999999
Q 000916 827 --SL-YGG------QS---DQLAVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELI 883 (1225)
Q Consensus 827 --~~-~~~------~S---Dhl~ll~af~~w~~~~~~~~~~~fC~~nfLs~~tL~~i~~lR~QL~~~L~ 883 (1225)
.. ... +. .|+-..-+.+.|.. +......+.++.+...-+..+.+.-.-|...+.
T Consensus 550 ~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~---~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~ 615 (720)
T 2zj8_A 550 YFDDPYISGYDPYLERKFFRAFKTALVLLAWIN---EVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLK 615 (720)
T ss_dssp SSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 236553344420135567777999999999981---798788888838876769999999999999999
No 5
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=391.08 Aligned_cols=246 Identities=20% Similarity=0.320 Sum_probs=214.6
Q ss_pred CHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
Q ss_conf 74454211279994789999999999718777787432001101355576243699999842698269999963068888
Q 000916 725 NIEDFLQKTLDPPVSVTIRNAIIVLQDIGALSLDEKVTELGEKLGCLSVHPLMSKMLFFAILMDCLDPALTLACASDYRD 804 (1225)
Q Consensus 725 ~i~~FL~~aldPP~~~aI~~Ai~~L~~lgALd~~e~LT~LG~~La~LPvdP~lgKmLi~g~~~~Cldp~ltIaA~ls~~~ 804 (1225)
+...||..++|||+..++..|++.|+.|||||.+++||++|++|+.||+||++||||+.|+.|+|++++++|||+|++++
T Consensus 3 ~~~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~ 82 (270)
T 3i4u_A 3 DRGPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 82 (270)
T ss_dssp -----------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred CCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 84102666899949999999999999868947999826899999718998799999998212388999999999977986
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86678992399999999998732106987189999999999999623936999988500134799799999999999998
Q 000916 805 PFTLPISPNEKKRATAAKFELASLYGGQSDQLAVIAAFECWKNAKQRGQEAWFCSQYFVSSGVMNMLLGMRKQLQTELIK 884 (1225)
Q Consensus 805 pF~~p~~~~~~~~~~~~k~~~a~~~~~~SDhl~ll~af~~w~~~~~~~~~~~fC~~nfLs~~tL~~i~~lR~QL~~~L~~ 884 (1225)
||+.|.+ .+++++.+|..|+ +..|||++++|+|++|... +....||++|||++.+|+++.++|.||.++|.+
T Consensus 83 ~f~~p~~--~~~~a~~~~~~f~---~~~sD~ltlLn~~~~~~~~---~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~ 154 (270)
T 3i4u_A 83 VFYRPKD--KQALADQKKAKFH---QTEGDHLTLLAVYNSWKNN---KFSNPWCYENFIQARSLRRAQDIRKQMLGIMDR 154 (270)
T ss_dssp CBCCCGG--GHHHHHHHHHTTC---BTTBHHHHHHHHHHHHHHT---TTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCH--HHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 3459723--6999999998735---8887699999999999973---753668988448999999999999999998987
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 69988898878888998389999998502743225348888886079811794899898996876677888999968997
Q 000916 885 NGFIPEDVSSCSHNARVPGIIHAVLMAGLYPMVARLRPPHKNGRRFVETAGGAKVRLHPHSLNFKLSFKKTDDCPLMVYD 964 (1225)
Q Consensus 885 ~gfi~~~~~~~n~ns~~~~lika~L~aGlYPnVArv~~~~~~~~~~v~t~~~~~V~lHPsSvl~~~~~~~~~~~~wivy~ 964 (1225)
.|+.. +.+..++..|+++||+|||+|||+..+. ++ +....++..|+|||+|++++ .+++||||+
T Consensus 155 ~~~~~------~s~~~~~~~i~~~L~aG~~~nvA~~~~~--~~--Y~~~~~~~~v~iHPsS~L~~------~~p~wvvy~ 218 (270)
T 3i4u_A 155 HKLDV------VSCGKSTVRVQKAICSGFFRNAAKKDPQ--EG--YRTLIDQQVVYIHPSSALFN------RQPEWVVYH 218 (270)
T ss_dssp TTCCC------CCCTTCTHHHHHHHHHHHGGGEEEECSS--SS--EEETTTCCEEEECTTSTTTT------SCCSEEEEE
T ss_pred CCCCC------CCCCCHHHHHHHHHHHHHHHHHHEECCC--CC--EEECCCCCEEEECCHHHHCC------CCCCEEEEE
T ss_conf 39986------7772168999999999848878223788--86--68715897799885045308------999879998
Q ss_pred EECCCCCCEEEEECCCCCHHHHHHHCCCCCC
Q ss_conf 3003467318852254492669852133322
Q 000916 965 EITRGDGGMHVRNCTVVGPLPLLLLATEIAV 995 (1225)
Q Consensus 965 E~~~t~~k~~ir~~T~V~p~~LlLfgg~~~~ 995 (1225)
|++.| ++.|||++|.|+|.||..+++.+.-
T Consensus 219 Elv~T-sk~y~r~vt~I~p~wL~~~ap~~~~ 248 (270)
T 3i4u_A 219 ELVLT-TKEYMREVTTIDPRWLVEFAPAFFK 248 (270)
T ss_dssp EEEES-SSEEEEEEEECCHHHHHHHCTTTEE
T ss_pred EHHHH-HHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 55641-4768774001689999998488734
No 6
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=1.00 E-value=1 Score=353.69 Aligned_cols=304 Identities=20% Similarity=0.239 Sum_probs=235.7
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 99996338997699999999997199499983699835505999999987604995099995543899999999999994
Q 000916 180 QIVEERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVER 259 (1225)
Q Consensus 180 ~~~~~R~~LPi~~~r~~Il~~i~~~~VviI~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Er 259 (1225)
+.+..|..||++.++++|+.++.+++++++.|+||||||+++++++++. ..+++|++|+|++|.+++++++.++
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 7654302597599999999999769849999189514999999999978------9969999654999999999999985
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHH
Q ss_conf 77558837799841546899731999830899999982284410002799532234774089961631024430289999
Q 000916 260 GENIGDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAI 339 (1225)
Q Consensus 260 ge~lG~~VGY~IRles~~s~~t~I~fcT~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~ishVIIDEvHER~~~tD~LL~l 339 (1225)
+..+|..+|+.. ....++|+|+|+|.|++ ... ..+.++++|||||+|+++...+..+..
T Consensus 282 g~~vg~~vG~~~-----~~~~~~IlV~TPGrLl~---~~~-------------l~l~~l~~lVlDEAH~l~~~~~~~l~~ 340 (666)
T 3o8b_A 282 GIDPNIRTGVRT-----ITTGAPVTYSTYGKFLA---DGG-------------CSGGAYDIIICDECHSTDSTTILGIGT 340 (666)
T ss_dssp SCCCEEECSSCE-----ECCCCSEEEEEHHHHHH---TTS-------------CCTTSCSEEEETTTTCCSHHHHHHHHH
T ss_pred CCCEEEEECCEE-----CCCCCCEEEECCHHHHH---CCC-------------CCCCCCCEEEECCCHHCCCCHHHHHHH
T ss_conf 997258988576-----15898999989078874---887-------------454751589982623248467999999
Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEECCCCCCCEE-EEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 998675799836999714566888973418999582389301326-9984236876310234445543456899996103
Q 000916 340 IRDMLPSYPHLRLILMSATLDADRFSQYFGGCPVIQVPGFTYPVK-SFYLEDVLSILKSAESNHLDSASLIVPNEDPELT 418 (1225)
Q Consensus 340 Lr~ll~~~~~LklILMSATld~~~fs~YF~~~pvi~Ipgr~~pV~-~~yLedil~~~~~~~~~~~~~~~~~~~~~~~~l~ 418 (1225)
+.+.++......+++||||+... +. ..+|.. ...+.. . ..
T Consensus 341 Il~~l~~~~~~llil~SAT~~~~-----------i~---~~~p~i~~v~~~~--------------------~-~~---- 381 (666)
T 3o8b_A 341 VLDQAETAGARLVVLATATPPGS-----------VT---VPHPNIEEVALSN--------------------T-GE---- 381 (666)
T ss_dssp HHHHTTTTTCSEEEEEESSCTTC-----------CC---CCCTTEEEEECBS--------------------C-SS----
T ss_pred HHHHHHHCCCCEEEEECCCCCCC-----------CC---CCCCCEEEEEECC--------------------C-CH----
T ss_conf 99862412772699987889844-----------45---6776147775023--------------------2-04----
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCHHHCCCCCHH
Q ss_conf 44322169998731152468789997620499773233344568852010036875301456420153200000133012
Q 000916 419 EENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTA 498 (1225)
Q Consensus 419 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a 498 (1225)
..+
T Consensus 382 -----------------------------------i~~------------------------------------------ 384 (666)
T 3o8b_A 382 -----------------------------------IPF------------------------------------------ 384 (666)
T ss_dssp -----------------------------------EEE------------------------------------------
T ss_pred -----------------------------------HHH------------------------------------------
T ss_conf -----------------------------------678------------------------------------------
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
Q ss_conf 10022368046999999976643224678999886531059100018999999999870399982999959999999999
Q 000916 499 LQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTR 578 (1225)
Q Consensus 499 ~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~li~~I~~~~~~G~ILVFLPG~~eI~~l~ 578 (1225)
+ ...+.+ .....+.+|||+++.++++.+.
T Consensus 385 -----------------------------------~-----~~~~~l-----------~~~~~~~vLVFv~Tr~~ae~la 413 (666)
T 3o8b_A 385 -----------------------------------Y-----GKAIPI-----------EAIRGGRHLIFCHSKKKCDELA 413 (666)
T ss_dssp -----------------------------------T-----TEEECG-----------GGSSSSEEEEECSCHHHHHHHH
T ss_pred -----------------------------------H-----HHHHHH-----------HHCCCCCEEEEECCHHHHHHHH
T ss_conf -----------------------------------8-----764345-----------5406995899968889999999
Q ss_pred HHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCHHCCCCCCCCEEEEEECCCCCCCC----CCCC
Q ss_conf 999709999999963999735999989899872599999825998232000046779748999389864311----2589
Q 000916 579 DRLLANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKS----YDPY 654 (1225)
Q Consensus 579 ~~L~~~~~~~~~~~~~il~LHS~l~~~eQ~~vf~~~p~G~rKIILATNIAEtSITI~dV~yVIDsG~~Ke~~----yd~~ 654 (1225)
+.|.... +.+.++||+|+.++ +..+.++|+||||++|+||||| |.+|||+|+.++.. |||.
T Consensus 414 ~~L~~~g-------~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~ 478 (666)
T 3o8b_A 414 AKLSGLG-------INAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPT 478 (666)
T ss_dssp HHHHTTT-------CCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSS
T ss_pred HHHHHCC-------CCEEEECCCCCHHH-------HHHCCCCEEEECCHHHCCCCCC-CCEEEECCCCCCCCCCCCCCCC
T ss_conf 9998679-------93898608788999-------9728984999897477267789-7589966764322112355532
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCHHHH
Q ss_conf 9831134432478349863074698754079972688788
Q 000916 655 NNVSTLQSSWVSKASAKQRAGRAGRCQAGICYHLYSQLRA 694 (1225)
Q Consensus 655 ~~~s~L~~~wiSkasa~QR~GRAGR~~pG~CyrLys~~~~ 694 (1225)
.++..+ ..|+|.+++.||.|||||.++|. |.||+..+.
T Consensus 479 ~gl~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 479 FTIETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp CEEEEE-EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred CCCCCC-CCCCCHHHHHHHHCCCCCCCCCE-EEEEECCHH
T ss_conf 232235-57699999999863578899988-999823131
No 7
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=1.00 E-value=1 Score=345.51 Aligned_cols=296 Identities=19% Similarity=0.211 Sum_probs=227.1
Q ss_pred HHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 99999971994999836998355059999999876049950999955438999999999999947755883779984154
Q 000916 196 VITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLES 275 (1225)
Q Consensus 196 ~Il~~i~~~~VviI~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IRles 275 (1225)
...+++.++++++|+++||||||+++.+++++.....+ ++++|++|+|.+|.++++++. |..++++.....
T Consensus 13 ~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~--~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~ 83 (459)
T 2z83_A 13 GSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR--LRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQ 83 (459)
T ss_dssp --CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT--CCEEEEECSHHHHHHHHHHTT-------TSCEEECC----
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHC-------CCEEEEEECCCC
T ss_conf 88999850994999879989888999999999998679--959998863999999999965-------956757832410
Q ss_pred C-CCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 6-899731999830899999982284410002799532234774089961631024430289999998675799836999
Q 000916 276 K-GGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLIL 354 (1225)
Q Consensus 276 ~-~s~~t~I~fcT~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~ishVIIDEvHER~~~tD~LL~lLr~ll~~~~~LklIL 354 (1225)
. .++...+.++|.|.|++.+..+ ..+.++++|||||+|+++..+++.++.++.+.. .++.++|+
T Consensus 84 ~~~t~~~~i~~~~~~~l~~~l~~~--------------~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il 148 (459)
T 2z83_A 84 REHQGNEIVDVMCHATLTHRLMSP--------------NRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIF 148 (459)
T ss_dssp ----CCCSEEEEEHHHHHHHHHSC--------------C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEE
T ss_pred CCCCCCCEEEEECHHHHHHHHHCC--------------CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC-CCCCCEEE
T ss_conf 478998479998608999976266--------------555677589997874677322678999998741-67862899
Q ss_pred ECCCCCHHHHHHHHCCCCEEECCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 71456688897341899958238930132699842368763102344455434568999961034432216999873115
Q 000916 355 MSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWS 434 (1225)
Q Consensus 355 MSATld~~~fs~YF~~~pvi~Ipgr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~i~~~~~ 434 (1225)
||||+..+...-...+.|++.+.. . +|...
T Consensus 149 ~SAT~~~~~~~~~~~~~pi~~~~~-----------~-------------------~~~~~-------------------- 178 (459)
T 2z83_A 149 MTATPPGTTDPFPDSNAPIHDLQD-----------E-------------------IPDRA-------------------- 178 (459)
T ss_dssp ECSSCTTCCCSSCCCSSCEEEEEC-----------C-------------------CCSSC--------------------
T ss_pred EECCCCCCHHHHCCCCCCEEEECC-----------C-------------------CCCCH--------------------
T ss_conf 973787320232258997378434-----------6-------------------89620--------------------
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCHHHCCCCCHHHHHCCCCCCHHHHHHH
Q ss_conf 24687899976204997732333445688520100368753014564201532000001330121002236804699999
Q 000916 435 NDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514 (1225)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~a~~~~~~~~~~~l 514 (1225)
+
T Consensus 179 ---------------------~---------------------------------------------------------- 179 (459)
T 2z83_A 179 ---------------------W---------------------------------------------------------- 179 (459)
T ss_dssp ---------------------C----------------------------------------------------------
T ss_pred ---------------------H----------------------------------------------------------
T ss_conf ---------------------5----------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 99766432246789998865310591000189999999998703999829999599999999999997099999999639
Q 000916 515 KKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFV 594 (1225)
Q Consensus 515 ~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~li~~I~~~~~~G~ILVFLPG~~eI~~l~~~L~~~~~~~~~~~~~ 594 (1225)
...++++ . ...|.+|||++++.+++.+.+.|.... +.
T Consensus 180 ---------------------------~~~~~~l-------~--~~~~~~LVF~~s~~~~~~l~~~L~~~g-------~~ 216 (459)
T 2z83_A 180 ---------------------------SSGYEWI-------T--EYAGKTVWFVASVKMGNEIAMCLQRAG-------KK 216 (459)
T ss_dssp ---------------------------SSCCHHH-------H--HCCSCEEEECSCHHHHHHHHHHHHHTT-------CC
T ss_pred ---------------------------HHHHHHH-------H--HCCCCEEEEECCHHHHHHHHHHHHHCC-------CC
T ss_conf ---------------------------8899999-------8--458999999698699999999998659-------90
Q ss_pred EEEECCCCCHHHHHHHHCCCCCCCCEEEEECCHHCCCCCCCCEEEEEECCCCCCCCCC--CCCCCCCCCCCCCCHHHHHH
Q ss_conf 9973599998989987259999982599823200004677974899938986431125--89983113443247834986
Q 000916 595 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYD--PYNNVSTLQSSWVSKASAKQ 672 (1225)
Q Consensus 595 il~LHS~l~~~eQ~~vf~~~p~G~rKIILATNIAEtSITI~dV~yVIDsG~~Ke~~yd--~~~~~s~L~~~wiSkasa~Q 672 (1225)
+..||+. ++.++++.++.|.++|+||||++|+|||||+ .+|||+|+.+.+.|+ ....+..+...|.|++++.|
T Consensus 217 v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~Q 291 (459)
T 2z83_A 217 VIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQ 291 (459)
T ss_dssp EEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHH
T ss_pred EEECCHH----HHHHHHHHCCCCCCEEEEECCHHHHCEECCC-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 8855999----9999985335798559998981871860489-8899788522221024553321015677779889987
Q ss_pred HCCCCCCCC--CEEEEEECCHH
Q ss_conf 307469875--40799726887
Q 000916 673 RAGRAGRCQ--AGICYHLYSQL 692 (1225)
Q Consensus 673 R~GRAGR~~--pG~CyrLys~~ 692 (1225)
|.|||||.+ +|.||.+++..
T Consensus 292 R~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 292 RRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHTTSSCCTTCCCEEEEECSCC
T ss_pred HCCCCCCCCCCCCEEEEEECCC
T ss_conf 3615688989997299997666
No 8
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=331.02 Aligned_cols=378 Identities=18% Similarity=0.249 Sum_probs=253.2
Q ss_pred HHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 63389976999999999971994999836998355059999999876049950999955438999999999999947755
Q 000916 184 ERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 184 ~R~~LPi~~~r~~Il~~i~~~~VviI~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
.+..++.+.+|.+++..|.+++.++|+|+||||||+++.+++++.... ..++++++|+|.+|.++++++....+
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~PtraLa~Q~~~~l~~~~~--- 252 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG--- 252 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHTS---
T ss_pred HHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC---CCEEEEECCCHHHHHHHHHHHHHHHC---
T ss_conf 847999999999999999769988998899997199999999999755---97499990849999999999999828---
Q ss_pred CCEEEEEEEECCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 88377998415468997319998308999999822844100027995322347740899616310244302899999986
Q 000916 264 GDNIGYKIRLESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDM 343 (1225)
Q Consensus 264 G~~VGY~IRles~~s~~t~I~fcT~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~ishVIIDEvHER~~~tD~LL~lLr~l 343 (1225)
.||+ +..+......+.|++||+|+|+++|..+. ..+.++++|||||+|. -.+..+-..+-..+
T Consensus 253 --~Vgl-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~-------------~~l~~l~lVVIDEaH~-l~d~~rg~~~e~ii 315 (1108)
T 3l9o_A 253 --DVGL-MTGDITINPDAGCLVMTTEILRSMLYRGS-------------EVMREVAWVIFDEVHY-MRDKERGVVWEETI 315 (1108)
T ss_dssp --SEEE-ECSSCBCCCSCSEEEEEHHHHHHHHHHCS-------------SHHHHEEEEEEETGGG-TTSHHHHHHHHHHH
T ss_pred --CCCE-EECCCCCCCCCCEEEECHHHHHHHHHCCC-------------CCCCCCCEEEEHHHHH-CCCCCHHHHHHHHH
T ss_conf --9218-96765268999989967699999997475-------------4322378998700212-02300689999999
Q ss_pred CCCCCCCEEEEECCCC-CHHHHHHHHC-----CCCEEECCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 7579983699971456-6888973418-----999582389301326998423687631023444554345689999610
Q 000916 344 LPSYPHLRLILMSATL-DADRFSQYFG-----GCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPEL 417 (1225)
Q Consensus 344 l~~~~~LklILMSATl-d~~~fs~YF~-----~~pvi~Ipgr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~~~~~~~l 417 (1225)
....++.++|+||||+ +...|.+|++ .+.++..+.+..|++.++.......... +
T Consensus 316 ~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~-------------------~ 376 (1108)
T 3l9o_A 316 ILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYL-------------------V 376 (1108)
T ss_dssp HHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEE-------------------E
T ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEE-------------------E
T ss_conf 864777649997288898799999998515898279834787554068986247764256-------------------4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCHHHCCCCCH
Q ss_conf 34432216999873115246878999762049977323334456885201003687530145642015320000013301
Q 000916 418 TEENKSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRT 497 (1225)
Q Consensus 418 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~ 497 (1225)
...... +....+...+..+.... +..+.- ..+.+... .
T Consensus 377 vd~~~~---------~~~~~~~~~~~~l~~~~------------~~~~~~-~~~~~~~~-------------------~- 414 (1108)
T 3l9o_A 377 VDEKST---------FREENFQKAMASISNQI------------GDDPNS-TDSRGKKG-------------------Q- 414 (1108)
T ss_dssp EETTTE---------ECHHHHHHHHTTC----------------------------------------------------
T ss_pred ECCCCC---------HHHHHHHHHHHHHHHHH------------CCCCCC-CCCCCCCC-------------------C-
T ss_conf 144220---------11566899999987541------------133211-23433222-------------------2-
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH
Q ss_conf 21002236804699999997664322467899988653105910001899999999987039998299995999999999
Q 000916 498 ALQLGEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKT 577 (1225)
Q Consensus 498 a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~li~~I~~~~~~G~ILVFLPG~~eI~~l 577 (1225)
.+..... .......+..++..+.. ...+.+|||+++..++..+
T Consensus 415 -----------------------------------~~~~~~~-~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 415 -----------------------------------TYKGGSA-KGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHHH
T ss_pred -----------------------------------CCCCCCC-CCCCHHHHHHHHHHHHH-CCCCCEEEEECCHHHHHHH
T ss_conf -----------------------------------3445554-43205689999999996-2899889995848789999
Q ss_pred HHHHHCCCCCCCC--------------------------------CCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 9999709999999--------------------------------96399973599998989987259999982599823
Q 000916 578 RDRLLANPFFRDT--------------------------------SKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILST 625 (1225)
Q Consensus 578 ~~~L~~~~~~~~~--------------------------------~~~~il~LHS~l~~~eQ~~vf~~~p~G~rKIILAT 625 (1225)
...|....+.... -+..|.++||+|+..+|..+++.|+.|..+|++||
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT 537 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 537 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99998646997778999999999887504644330056887877651575652589989999999999867998499987
Q ss_pred CHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC---CEEEEEECCHH
Q ss_conf 20000467797489993898643112589983113443247834986307469875---40799726887
Q 000916 626 NIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQ---AGICYHLYSQL 692 (1225)
Q Consensus 626 NIAEtSITI~dV~yVIDsG~~Ke~~yd~~~~~s~L~~~wiSkasa~QR~GRAGR~~---pG~CyrLys~~ 692 (1225)
+++++|||||++.+||++.. .||.. ...|+|.+++.||+|||||.+ .|+||.+|+..
T Consensus 538 ~vla~GIDiP~v~~VI~~~~----~~d~~------~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 538 ETFSIGLNMPAKTVVFTSVR----KWDGQ------QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp SCCCSCCCC--CEEEESCSE----EESSS------CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CHHHCCCCCCCCEEEEECCC----CCCCC------CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCC
T ss_conf 27765778787459996576----66864------45638999999763634778999855999995588
No 9
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=1.00 E-value=1 Score=330.76 Aligned_cols=293 Identities=19% Similarity=0.199 Sum_probs=227.6
Q ss_pred HHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 99999971994999836998355059999999876049950999955438999999999999947755883779984154
Q 000916 196 VITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENIGDNIGYKIRLES 275 (1225)
Q Consensus 196 ~Il~~i~~~~VviI~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~lG~~VGY~IRles 275 (1225)
.|...+..+++++++++||||||+++..++++.....+ ++++|++|+|.+|.++++++. |..++|+++...
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~--~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~ 81 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR--LRTLILAPTRVVAAEMEEALR-------GLPIRYQTPAVK 81 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHTT-------TSCEEECCTTCS
T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHHHHHC-------CCEEEEEECCCC
T ss_conf 99999845984999879999875689999999998459--959998778999999999844-------953556401410
Q ss_pred -CCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf -6899731999830899999982284410002799532234774089961631024430289999998675799836999
Q 000916 276 -KGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRDMLPSYPHLRLIL 354 (1225)
Q Consensus 276 -~~s~~t~I~fcT~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~ishVIIDEvHER~~~tD~LL~lLr~ll~~~~~LklIL 354 (1225)
..++.+.|.+||+|.|++.+..+ ..+.++++|||||+|+++...++++.++.... ..++.++|+
T Consensus 82 ~~~~~~~~i~~~t~~~l~~~l~~~--------------~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~-~~~~~~~i~ 146 (451)
T 2jlq_A 82 SDHTGREIVDLMCHATFTTRLLSS--------------TRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMGEAAAIF 146 (451)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHHHC--------------SCCCCCSEEEEETTTCCSHHHHHHHHHHHHHH-HTTSCEEEE
T ss_pred CCCCCCCEEEEECHHHHHHHHHCC--------------CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH-CCCCCEEEE
T ss_conf 267999449998839999986476--------------55467778999588557824689999999851-477733999
Q ss_pred ECCCCCHHHHHHHHCCCCEEECCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 71456688897341899958238930132699842368763102344455434568999961034432216999873115
Q 000916 355 MSATLDADRFSQYFGGCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEENKSTLDEAISLAWS 434 (1225)
Q Consensus 355 MSATld~~~fs~YF~~~pvi~Ipgr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~i~~~~~ 434 (1225)
||||++.+.+..++++.+++.++ +.+|...+
T Consensus 147 ~SAT~~~~~~~~~~~~~~~~~~~-~~~p~~~~------------------------------------------------ 177 (451)
T 2jlq_A 147 MTATPPGSTDPFPQSNSPIEDIE-REIPERSW------------------------------------------------ 177 (451)
T ss_dssp ECSSCTTCCCSSCCCSSCEEEEE-CCCCSSCC------------------------------------------------
T ss_pred ECCCCCCCCHHHHCCCCCEEECC-CCCCCHHH------------------------------------------------
T ss_conf 90378854223305899667457-65783045------------------------------------------------
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCHHHCCCCCHHHHHCCCCCCHHHHHHH
Q ss_conf 24687899976204997732333445688520100368753014564201532000001330121002236804699999
Q 000916 435 NDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQLGEQENQPEVAQII 514 (1225)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~a~~~~~~~~~~~l 514 (1225)
. .
T Consensus 178 ----------------------~----------------------------------------~---------------- 179 (451)
T 2jlq_A 178 ----------------------N----------------------------------------T---------------- 179 (451)
T ss_dssp ----------------------S----------------------------------------S----------------
T ss_pred ----------------------H----------------------------------------H----------------
T ss_conf ----------------------7----------------------------------------7----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 99766432246789998865310591000189999999998703999829999599999999999997099999999639
Q 000916 515 KKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRLLANPFFRDTSKFV 594 (1225)
Q Consensus 515 ~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~li~~I~~~~~~G~ILVFLPG~~eI~~l~~~L~~~~~~~~~~~~~ 594 (1225)
. +. .+. ...|.+|||+++..+++.+.+.|.... +.
T Consensus 180 ---------------------------~--~~-------~l~--~~~~~~lVF~~s~~~a~~l~~~L~~~g-------~~ 214 (451)
T 2jlq_A 180 ---------------------------G--FD-------WIT--DYQGKTVWFVPSIKAGNDIANCLRKSG-------KR 214 (451)
T ss_dssp ---------------------------S--CH-------HHH--HCCSCEEEECSSHHHHHHHHHHHHTTT-------CC
T ss_pred ---------------------------H--HH-------HHH--HCCCCEEEECCCHHHHHHHHHHHHHCC-------CE
T ss_conf ---------------------------8--99-------997--479999999399899999999999759-------95
Q ss_pred EEEECCCCCHHHHHHHHCCCCCCCCEEEEECCHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC---CCCCHHHHH
Q ss_conf 99735999989899872599999825998232000046779748999389864311258998311344---324783498
Q 000916 595 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQS---SWVSKASAK 671 (1225)
Q Consensus 595 il~LHS~l~~~eQ~~vf~~~p~G~rKIILATNIAEtSITI~dV~yVIDsG~~Ke~~yd~~~~~s~L~~---~wiSkasa~ 671 (1225)
+..||+.+ +.++++.++.|..+|++|||++|+|||||+ .+|||+|+.+.+.|| ..+...+.. .|.|.+++.
T Consensus 215 ~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~ 288 (451)
T 2jlq_A 215 VIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAA 288 (451)
T ss_dssp EEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHH
T ss_pred EEECCHHH----HHHHHHHHCCCCCEEEEECCHHHHCCCCCC-CEEEECCCCCCCCCC-CCCCCEEEECCCCCCCHHHHH
T ss_conf 99788788----999987622699549998977872767799-889979974332002-556530243266568999999
Q ss_pred HHCCCCCCCC--CEEEEEECC
Q ss_conf 6307469875--407997268
Q 000916 672 QRAGRAGRCQ--AGICYHLYS 690 (1225)
Q Consensus 672 QR~GRAGR~~--pG~CyrLys 690 (1225)
||+|||||.+ +|.||.+++
T Consensus 289 Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 289 QRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp HHHTTSSCCTTCCCEEEEECS
T ss_pred HHCCCCCCCCCCCCCEEEEEC
T ss_conf 864334778899951899938
No 10
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=1.00 E-value=1 Score=322.12 Aligned_cols=303 Identities=19% Similarity=0.219 Sum_probs=235.1
Q ss_pred HHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 63389976999999999971994999836998355059999999876049950999955438999999999999947755
Q 000916 184 ERSKLPISSFKDVITSTVDSNQVVLISGETGCGKTTQVPQFLLEHIWSKGETCKIVCTQPRRISATSVAERISVERGENI 263 (1225)
Q Consensus 184 ~R~~LPi~~~r~~Il~~i~~~~VviI~GeTGsGKTTQvPq~ILe~~~~~~~~~~IicTQPRRiaAisvAeRVa~Erge~l 263 (1225)
++..+|++.+ . +..+.++++++++++||||||+++...+++.....+ .+++|+.|+|.+|.++++++.
T Consensus 169 ~~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~--~~vLvl~PtreLa~Qi~~~l~------- 236 (618)
T 2whx_A 169 ERIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRR--LRTLILAPTRVVAAEMEEALR------- 236 (618)
T ss_dssp CCCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHTT-------
T ss_pred CCCCCCCCCC--C-HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHHHC-------
T ss_conf 6657882004--8-778734973999928999887999999999998579--809999176999999999856-------
Q ss_pred CCEEEEEEEE-CCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 8837799841-546899731999830899999982284410002799532234774089961631024430289999998
Q 000916 264 GDNIGYKIRL-ESKGGKHSSIVFCTNGVLLRLLVSQGVSRLKEASNKPAKDDVSALTHIIVDEIHERDRYSDFMLAIIRD 342 (1225)
Q Consensus 264 G~~VGY~IRl-es~~s~~t~I~fcT~GvLLr~L~~~~~~~~~~~~~~~~~~~L~~ishVIIDEvHER~~~tD~LL~lLr~ 342 (1225)
|..++|+++. +...++.+.+.++|.|.|++.+..+ +.+.++++|||||+|+++...+..+..++.
T Consensus 237 ~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~--------------~~l~~~~~iViDEah~~~~~~~~~~~~i~~ 302 (618)
T 2whx_A 237 GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSS--------------TRVPNYNLIVMDEAHFTDPCSVAARGYIST 302 (618)
T ss_dssp TSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHC--------------SSCCCCSEEEEESTTCCSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCEECCCCCCEEEEECHHHHHHHHHCC--------------CCCCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 896157625601125898359997758999987356--------------455677599998997788027999999999
Q ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHC-CCCEEECCCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 675799836999714566888973418-9995823893013269984236876310234445543456899996103443
Q 000916 343 MLPSYPHLRLILMSATLDADRFSQYFG-GCPVIQVPGFTYPVKSFYLEDVLSILKSAESNHLDSASLIVPNEDPELTEEN 421 (1225)
Q Consensus 343 ll~~~~~LklILMSATld~~~fs~YF~-~~pvi~Ipgr~~pV~~~yLedil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (1225)
.+. +++.++|+||||+... ...++. +.+++.++.. + |..
T Consensus 303 ~l~-~~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~-------~-----------------------~~~-------- 342 (618)
T 2whx_A 303 RVE-MGEAAAIFMTATPPGS-TDPFPQSNSPIEDIERE-------I-----------------------PER-------- 342 (618)
T ss_dssp HHH-HTSCEEEEECSSCTTC-CCSSCCCSSCEEEEECC-------C-----------------------CSS--------
T ss_pred HHC-CCCCCEEEEECCCCHH-HHHHHCCCCCEEEECCC-------C-----------------------CHH--------
T ss_conf 733-6686189997899645-55664058844550452-------8-----------------------878--------
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCHHHCCCCCHHHHH
Q ss_conf 22169998731152468789997620499773233344568852010036875301456420153200000133012100
Q 000916 422 KSTLDEAISLAWSNDEFDMLLELVSLEGSPNVYNYQHTLTGLTPLMVLAGKGRVGDVCMLLSLGADCQLKAKDGRTALQL 501 (1225)
Q Consensus 422 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~g~t~l~~~a~~~~~~~~~~ll~~g~~~~~~~~~~~~a~~~ 501 (1225)
.+ .
T Consensus 343 ---------------------------------~~-------------------~------------------------- 345 (618)
T 2whx_A 343 ---------------------------------SW-------------------N------------------------- 345 (618)
T ss_dssp ---------------------------------CC-------------------S-------------------------
T ss_pred ---------------------------------HH-------------------H-------------------------
T ss_conf ---------------------------------99-------------------9-------------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 22368046999999976643224678999886531059100018999999999870399982999959999999999999
Q 000916 502 GEQENQPEVAQIIKKHMENALSDSMKQQLLDKYLATVNPELIDLVLIEQLLRKICMDSEDGAILVFLPGWEDINKTRDRL 581 (1225)
Q Consensus 502 a~~~~~~~~~~~l~~~~~~~~~~~~~~~ll~~y~~~~~~~~id~~Li~~li~~I~~~~~~G~ILVFLPG~~eI~~l~~~L 581 (1225)
. ++. .+.. ..+.+|||+++..+++.+.+.|
T Consensus 346 ----------------------------------------~----ll~----~l~~--~~~~~LVF~~s~~~a~~l~~~L 375 (618)
T 2whx_A 346 ----------------------------------------T----GFD----WITD--YQGKTVWFVPSIKAGNDIANCL 375 (618)
T ss_dssp ----------------------------------------S----SCH----HHHH--CCSCEEEECSSHHHHHHHHHHH
T ss_pred ----------------------------------------H----HHH----HHHH--CCCCEEEEECCHHHHHHHHHHH
T ss_conf ----------------------------------------9----999----9982--7998999978824999999999
Q ss_pred HCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEECCHHCCCCCCCCEEEEEECCCCCCCCC--CCCCCCCC
Q ss_conf 7099999999639997359999898998725999998259982320000467797489993898643112--58998311
Q 000916 582 LANPFFRDTSKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSY--DPYNNVST 659 (1225)
Q Consensus 582 ~~~~~~~~~~~~~il~LHS~l~~~eQ~~vf~~~p~G~rKIILATNIAEtSITI~dV~yVIDsG~~Ke~~y--d~~~~~s~ 659 (1225)
.... +.+..||+. ++.++++.++.|..+|++|||++|+||||| |.+|||+|.++...+ +...++..
T Consensus 376 ~~~g-------~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i 443 (618)
T 2whx_A 376 RKSG-------KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVIL 443 (618)
T ss_dssp HHTT-------CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEE
T ss_pred HHCC-------CCEEEECHH----HHHHHHHHHCCCCCEEEEECCHHHCCCCCC-CEEEEECCCEECCEECCCCCCCEEE
T ss_conf 8759-------959997858----899998760379937999880787193228-6489978626333450367775577
Q ss_pred CCCCCCCHHHHHHHCCCCCCCC--CEEEEEECCH
Q ss_conf 3443247834986307469875--4079972688
Q 000916 660 LQSSWVSKASAKQRAGRAGRCQ--AGICYHLYSQ 691 (1225)
Q Consensus 660 L~~~wiSkasa~QR~GRAGR~~--pG~CyrLys~ 691 (1225)
+...|+|.+++.||.|||||.+ +|.||.++++
T Consensus 444 ~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 444 AGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp EEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCC
T ss_conf 1555689999997541038998999739998257
Done!