Query 000917
Match_columns 1225
No_of_seqs 188 out of 324
Neff 2.6
Searched_HMMs 13730
Date Tue Mar 26 17:07:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000917.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_685-689//hhsearch_scop/000917hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmeb2 f.17.2.1 (B:3-36) Bact 5.9 27 0.002 10.7 -1.6 14 1195-1208 14-27 (34)
2 d2essa2 d.38.1.8 (A:150-247) A 4.6 78 0.0057 8.0 1.5 29 851-879 5-33 (98)
3 d2vxfa1 b.38.1.5 (A:6-85) LSM1 4.2 88 0.0064 7.7 1.7 51 644-698 26-77 (80)
4 d2cmea1 b.164.1.1 (A:9-98) Hyp 3.4 1.1E+02 0.0077 7.2 -0.1 18 50-67 24-41 (78)
5 d1nlna_ d.3.1.7 (A:) Human ade 3.4 1.1E+02 0.0082 7.0 0.7 10 1145-1154 120-129 (203)
6 d1eucb1 c.23.4.1 (B:246-393) S 3.4 1E+02 0.0074 7.3 -0.2 50 6-58 65-114 (148)
7 d2tpta1 a.46.2.1 (A:1-70) Thym 3.3 1.2E+02 0.0084 7.0 0.0 42 1-57 1-50 (70)
8 d1laja_ b.121.4.5 (A:) Cucumov 3.2 68 0.0049 8.4 -1.3 21 718-738 146-166 (174)
9 d2i5ha1 e.71.1.1 (A:16-195) Hy 3.2 1.2E+02 0.0091 6.8 1.0 30 34-63 82-123 (180)
10 d2cy3a_ a.138.1.1 (A:) Cytochr 3.0 1.3E+02 0.0095 6.6 2.6 30 591-620 1-30 (118)
No 1
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=5.93 E-value=27 Score=10.74 Aligned_cols=14 Identities=50% Similarity=1.122 Sum_probs=8.6
Q ss_pred CCEEEEHHHHHHEE
Q ss_conf 78200013112100
Q 000917 1195 NGWLAFYIFLRFSF 1208 (1225)
Q Consensus 1195 ~~~~~~~~~~~~~~ 1208 (1225)
.|||||-.-.-|-|
T Consensus 14 kgwlafslamlfvf 27 (34)
T d1xmeb2 14 KGWLAFSLAMLFVF 27 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 60899999999999
No 2
>d2essa2 d.38.1.8 (A:150-247) Acyl-ACP thioesterase {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=4.58 E-value=78 Score=7.98 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34444532324666567567545552100
Q 000917 851 TESHQGIDHQFGAQNTDAQGHINSDTDVV 879 (1225)
Q Consensus 851 ~e~~~~~~~~~~~~~~d~~~~m~~~~dv~ 879 (1225)
++++.+....+.-.|+|..||+|-..-+.
T Consensus 5 ~~~~~v~~~~vR~~D~D~~gHVNN~~Y~~ 33 (98)
T d2essa2 5 TSNQPVATLTAKYSDIDINGHVNSIRYIE 33 (98)
T ss_dssp CCCSCSEEEECCGGGBCTTSBBCHHHHHH
T ss_pred CCCCEEEEEEECHHHCCCCCEECHHHHHH
T ss_conf 78864899887899918446573299999
No 3
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]}
Probab=4.16 E-value=88 Score=7.66 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCCCEECCCCC
Q ss_conf 2235431023454432366665545679999600112122376-676520025999
Q 000917 644 YTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGR-KSSVLKMKPTPP 698 (1225)
Q Consensus 644 ~teStlt~qS~~s~es~g~~~skrT~d~ipDdddllsSILvgr-~sP~l~l~PTPp 698 (1225)
..+||++++. |++||---. ++...||--+.+...|+|-. ---+|.+...|+
T Consensus 26 ~~~sTi~L~n---VrsfGTEgR-~~~~~ipp~~~vy~~IvFrgsDIKdL~v~e~p~ 77 (80)
T d2vxfa1 26 TENSTVALAK---VRSFGTEDR-PTDRPIAPRDETFEYIIFRGSDIKDLTVCEPPK 77 (80)
T ss_dssp TTTTEEEEEE---EEECCSTTS-CCSSCCCCCCCCEEEEEEETTTEEEEEESSCCC
T ss_pred CCCCEEEEEE---EEEEECCCC-CCCCCCCCCCCCEEEEEECCCCCCEEEECCCCC
T ss_conf 6347899143---158625789-888854998811668999576740678616899
No 4
>d2cmea1 b.164.1.1 (A:9-98) Hypothetical protein 5 (ORF-9b) {SARS coronavirus [TaxId: 227859]}
Probab=3.43 E-value=1.1e+02 Score=7.19 Aligned_cols=18 Identities=50% Similarity=0.671 Sum_probs=10.7
Q ss_pred CCHHHHHHCCCCCEEEEE
Q ss_conf 632333300136369998
Q 000917 50 PIALRLSSHLLLGVVRIY 67 (1225)
Q Consensus 50 PLALRLSGqLLlGVVRIY 67 (1225)
|+-|||-++|-+..||--
T Consensus 24 piilrlgs~lslsm~rr~ 41 (78)
T d2cmea1 24 PIILRLGSNLSLSMARRN 41 (78)
T ss_dssp EEEECCSSCCEEEEEEBC
T ss_pred EEEEEECCCCCHHHHHCC
T ss_conf 566651562126888715
No 5
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}
Probab=3.43 E-value=1.1e+02 Score=7.04 Aligned_cols=10 Identities=70% Similarity=1.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q ss_conf 9888777756
Q 000917 1145 ACFLFCDIFL 1154 (1225)
Q Consensus 1145 ~~~~~~~~~~ 1154 (1225)
||=|||-.||
T Consensus 120 aCGLFC~lFL 129 (203)
T d1nlna_ 120 ACGLFCCMFL 129 (203)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 6889999999
No 6
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=3.38 E-value=1e+02 Score=7.28 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHCCCCHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHCCCCCCCHHHHHHC
Q ss_conf 23502698036677631167776012205665887887418998632333300
Q 000917 6 FILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSH 58 (1225)
Q Consensus 6 ~LLSKKGPLAtIWLAATl~KKLsKKqIlkvDI~kSCeeIl~PevPLALRLSGq 58 (1225)
.|+.++..+-.||+ ++---++|-+..---|.++++++ .+..|+-.||+|.
T Consensus 65 ~iil~d~~Vk~IlI--NIfGGI~rcD~vA~GIv~A~~e~-~~~iPiVVRL~Gt 114 (148)
T d1eucb1 65 KLLTADPKVEAILV--NIFGGIVNCAIIANGITKACREL-ELKVPLVVRLEGT 114 (148)
T ss_dssp HHTTSCTTCCEEEE--EEECSSSCHHHHHHHHHHHHHHH-TCCSCEEEEEEST
T ss_pred HHHHCCCCCCEEEE--EEEEEEHHHHHHHHHHHHHHHHC-CCCCCEEEEECCC
T ss_conf 99977998468998--85673100889999999999863-9985089994268
No 7
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=3.35 E-value=1.2e+02 Score=6.96 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCCCHHHHHCCCCHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHCCCCCC--------CHHHHHH
Q ss_conf 97622235026980366776311677760122056658878874189986--------3233330
Q 000917 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVP--------IALRLSS 57 (1225)
Q Consensus 1 MFYS~~LLSKKGPLAtIWLAATl~KKLsKKqIlkvDI~kSCeeIl~PevP--------LALRLSG 57 (1225)
||-.++++.| +.+++.+..-.+...++.|++...+ +|||.-|
T Consensus 1 m~~~qeiI~k---------------~~~g~~Ls~~E~~~~~~~i~~g~~~d~qi~afL~al~~kG 50 (70)
T d2tpta1 1 LFLAQEIIRK---------------KRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHD 50 (70)
T ss_dssp CCCHHHHHHH---------------HHTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHH---------------HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 9879999999---------------8879996999999999999848845999999999999859
No 8
>d1laja_ b.121.4.5 (A:) Cucumovirus coat protein {TAV (Tomato aspermy virus) [TaxId: 12315]}
Probab=3.18 E-value=68 Score=8.37 Aligned_cols=21 Identities=43% Similarity=0.601 Sum_probs=0.0
Q ss_pred HHCCCCCCCEEECHHHHHHHH
Q ss_conf 201356540252127788851
Q 000917 718 KRKVLMDDTMVLHGDVIRQQL 738 (1225)
Q Consensus 718 KRKvl~Dd~mVL~nd~iRqQL 738 (1225)
|.-++=.|+||||-|+-.|.|
T Consensus 146 KDD~Le~DElvlHvDvEHqrI 166 (174)
T d1laja_ 146 KDDVLEADEMVIHIDIEHQRI 166 (174)
T ss_dssp SSSCCCTTSEEEEEEEEEECC
T ss_pred CCCCCCCCEEEEEEEECCCCC
T ss_conf 455556632699973011116
No 9
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.15 E-value=1.2e+02 Score=6.77 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHC-----------CCCCCCHHHH-HHCCCCCE
Q ss_conf 566588788741-----------8998632333-30013636
Q 000917 34 DTDIGVSVDSIL-----------FPDVPIALRL-SSHLLLGV 63 (1225)
Q Consensus 34 kvDI~kSCeeIl-----------~PevPLALRL-SGqLLlGV 63 (1225)
+.+++..++.|+ +-..||+||+ +=+||-||
T Consensus 82 k~eL~~vv~~iV~~ne~~FV~FfN~A~pit~klH~leLLPGI 123 (180)
T d2i5ha1 82 KTELPYVIEHIIKQDEKKYVDFFNKADSITTRMHQLELLPGV 123 (180)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHC--CCBCSSSBGGGGSTTC
T ss_pred HHHHHHHHHHHHHHCHHHHEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 998999999999859132100324587440346888743452
No 10
>d2cy3a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans, different strains [TaxId: 876]}
Probab=3.03 E-value=1.3e+02 Score=6.64 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899986333344743469888631113576
Q 000917 591 SDLPAPEKLLSVPEGLLNKPNDLIVESTPE 620 (1225)
Q Consensus 591 selp~pEKlLS~p~~~~~~~~dll~esTp~ 620 (1225)
+|-|.++++|.+|++..-++.-+-++.++.
T Consensus 1 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 30 (118)
T d2cy3a_ 1 ADAPGDDYVISAPEGMKAKPKGDKPGALQK 30 (118)
T ss_dssp CCCCCTTCEECCCTTCCCCCBTTBCCCCCC
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 988655414648776535752344677768
Done!