BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000918
(1224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TBM9|SRAC1_BOVIN Protein SERAC1 OS=Bos taurus GN=SERAC1 PE=2 SV=1
Length = 654
Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 157/290 (54%), Gaps = 19/290 (6%)
Query: 934 ETEASNVGDSCSSIDESQNSSQSVVPLVDIVFIHGLRGGPYKTWRISDDKYSTKSGLVEK 993
ET D + +SQ + D++FIHGL G +KTWR D+ L EK
Sbjct: 369 ETVPDKYHDGVYVLHPQYRTSQPIK--ADVLFIHGLMGAAFKTWRQQDND----QDLTEK 422
Query: 994 IDQEAGKFGTFWPAEWLSADFPQARMFTLKYKSNLTQWSGASLPLQEVSTM-----LLEK 1048
+ ++ K+ T WP WL+ D P R+ +++Y ++L+ W A P + S LL K
Sbjct: 423 VSEDETKYTTCWPKSWLARDCPALRIISVEYDTSLSDWR-ARCPTERKSIAFRSNELLRK 481
Query: 1049 LVAAGIGSRPVVFVTHSMGGLVVKQMLHKA-KTENIDNFVKNTVGLVFYSCPHFGSKLAD 1107
L AAG+G RPVV+V+HSMGGL+VK+ML +A K ++ + NT G++FYS PH GS LA+
Sbjct: 482 LRAAGVGDRPVVWVSHSMGGLLVKKMLLEASKRPEMNTIINNTRGIIFYSVPHHGSHLAE 541
Query: 1108 MPWRMGLVLRPAPTIGELRSGSSRLVELNDYIRHLHKKGVLEVLSFCETKVTPIVEGYGG 1167
+ +L P+ + EL S L L D K +VLSF ET T Y G
Sbjct: 542 YSVNIRYLLFPSLEVKELSKDSPALKTLQDDFLEFAKDKNFQVLSFVETLPT-----YIG 596
Query: 1168 WAFRMEIVPIESAYPGFGDLVVLESTDHINSCKPVNRTDPSYTEILEFLR 1217
++ +VP++SA G GDL+ ++ +H+N CKP + Y L+F+R
Sbjct: 597 SMIKLHVVPLDSADLGLGDLIPVD-VNHLNICKPKKKDAFLYQRTLQFIR 645
>sp|Q96JX3|SRAC1_HUMAN Protein SERAC1 OS=Homo sapiens GN=SERAC1 PE=1 SV=1
Length = 654
Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 161/291 (55%), Gaps = 19/291 (6%)
Query: 934 ETEASNVGDSCSSIDESQNSSQSVVPLVDIVFIHGLRGGPYKTWRISDDKYSTKSGLVEK 993
ET D + +SQ + D++FIHGL G +KTWR D ++ ++EK
Sbjct: 369 ETVQEKYQDGVYVLHPQYRTSQPIK--ADVLFIHGLMGAAFKTWRQQD----SEQAVIEK 422
Query: 994 IDQEAGKFGTFWPAEWLSADFPQARMFTLKYKSNLTQWSGASLPLQEVSTM-----LLEK 1048
++ ++ T WP WL+ D P R+ +++Y ++L+ W A P++ S LL K
Sbjct: 423 PMEDEDRYTTCWPKTWLAKDCPALRIISVEYDTSLSDWR-ARCPMERKSIAFRSNELLRK 481
Query: 1049 LVAAGIGSRPVVFVTHSMGGLVVKQMLHKAKTE-NIDNFVKNTVGLVFYSCPHFGSKLAD 1107
L AAG+G RPVV+++HSMGGL+VK+ML +A T+ + + NT G++FYS PH GS+LA+
Sbjct: 482 LRAAGVGDRPVVWISHSMGGLLVKKMLLEASTKPEMSTVINNTRGIIFYSVPHHGSRLAE 541
Query: 1108 MPWRMGLVLRPAPTIGELRSGSSRLVELNDYIRHLHKKGVLEVLSFCETKVTPIVEGYGG 1167
+ +L P+ + EL S L L D K +VL+F ET T Y G
Sbjct: 542 YSVNIRYLLFPSLEVKELSKDSPALKTLQDDFLEFAKDKNFQVLNFVETLPT-----YIG 596
Query: 1168 WAFRMEIVPIESAYPGFGDLVVLESTDHINSCKPVNRTDPSYTEILEFLRK 1218
++ +VP+ESA G GDL+ ++ +H+N CKP + Y L+F+R+
Sbjct: 597 SMIKLHVVPVESADLGIGDLIPVD-VNHLNICKPKKKDAFLYQRTLQFIRE 646
>sp|Q3U213|SRAC1_MOUSE Protein SERAC1 OS=Mus musculus GN=Serac1 PE=2 SV=1
Length = 654
Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 158/289 (54%), Gaps = 19/289 (6%)
Query: 934 ETEASNVGDSCSSIDESQNSSQSVVPLVDIVFIHGLRGGPYKTWRISDDKYSTKSGLVEK 993
ET D + +SQ + D++FIHGL G +KTWR ++ ++ L E
Sbjct: 369 ETVGEKYQDGVYVLHPQCRTSQPIK--ADVLFIHGLMGAAFKTWR----QHDSQRALTES 422
Query: 994 IDQEAGKFGTFWPAEWLSADFPQARMFTLKYKSNLTQWSGASLPLQEVSTM-----LLEK 1048
+ ++ T WP WL+ D P R+ +++Y ++L+ W A P++ S LL K
Sbjct: 423 AVVDEDRYTTCWPKTWLAKDCPSLRIISVEYDTSLSDWR-ARCPMERKSIAFRSNELLSK 481
Query: 1049 LVAAGIGSRPVVFVTHSMGGLVVKQMLHKA-KTENIDNFVKNTVGLVFYSCPHFGSKLAD 1107
L AAG+G RP+++++HSMGGL+VK+ML +A K ++ + NT G++FYS PH GS+LA+
Sbjct: 482 LRAAGVGDRPMIWISHSMGGLLVKKMLLEASKKPELNALINNTRGIIFYSVPHHGSRLAE 541
Query: 1108 MPWRMGLVLRPAPTIGELRSGSSRLVELNDYIRHLHKKGVLEVLSFCETKVTPIVEGYGG 1167
+ +L P+ + EL S L L D K +VL+F ET+ T I G
Sbjct: 542 YSVNIRYLLFPSLEVKELSKDSPALKTLQDDFLEFAKDKNFQVLNFVETQPTFI-----G 596
Query: 1168 WAFRMEIVPIESAYPGFGDLVVLESTDHINSCKPVNRTDPSYTEILEFL 1216
++ +VP+ESA G GDL+ ++ +H+N CKP + Y L+F+
Sbjct: 597 SMIKLHVVPVESADLGIGDLIPVD-VNHLNICKPKTKDAFLYQRTLQFI 644
>sp|Q5SNQ7|SRAC1_DANRE Protein SERAC1 OS=Danio rerio GN=serac1 PE=2 SV=1
Length = 658
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 149/264 (56%), Gaps = 19/264 (7%)
Query: 962 DIVFIHGLRGGPYKTWRISDDKYSTKSGLVEKIDQEAGKFGTFWPAEWLSADFPQARMFT 1021
D++F+HGL G +KTWR D + EK++ + WP WL+AD P R+ +
Sbjct: 397 DVLFVHGLLGAAFKTWRQKDCDVTDD----EKLEGVREDYTECWPKSWLAADCPNLRILS 452
Query: 1022 LKYKSNLTQWSGASLPLQEV-------STMLLEKLVAAGIGSRPVVFVTHSMGGLVVKQM 1074
++Y ++L+ W+ + P++ S LL KL AG+G RPV++V HSMGGL+VK+M
Sbjct: 453 VEYDTHLSDWN-SKCPVENQRKSLAFRSQELLRKLKDAGVGERPVIWVAHSMGGLLVKKM 511
Query: 1075 L-HKAKTENIDNFVKNTVGLVFYSCPHFGSKLADMPWRMGLVLRPAPTIGELRSGSSRLV 1133
L AK ++ + +KNT G++FYS PH G+ +A+ + +L P+ + EL S L
Sbjct: 512 LLDAAKDPDLSSLIKNTKGILFYSVPHHGTFMAEYSVSVRYLLFPSIEVKELCRDSPALR 571
Query: 1134 ELNDYIRHLHKKGVLEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYPGFGDLVVLEST 1193
+LN+ ++ K +VLSF ET V Y G ++ +VP SA G GDL+ ++
Sbjct: 572 DLNENFLNIAKDREFKVLSFAET-----VPTYIGPMLKILVVPAHSADLGIGDLIQVD-V 625
Query: 1194 DHINSCKPVNRTDPSYTEILEFLR 1217
DH+N CKP + Y L+F++
Sbjct: 626 DHLNICKPEKKDTFLYKRTLQFIQ 649
>sp|Q95JR3|SRAC1_MACFA Protein SERAC1 OS=Macaca fascicularis GN=SERAC1 PE=2 SV=1
Length = 531
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 26/145 (17%)
Query: 962 DIVFIHGLRGGPYKTWRISDDKYSTKSGLVEKIDQEAGKFGTFWPAEWLSADFPQARMFT 1021
D++FIHGL G +KTWR D ++ ++EK +E ++ T WP WL+ D P R+ +
Sbjct: 395 DVLFIHGLMGAAFKTWRQQD----SEQAVIEKPMEEEDRYTTCWPKTWLAKDCPALRIIS 450
Query: 1022 LKYKSNLTQWSGASLPLQEVSTMLLEKLVAAGIGSRPVVFVTHSMGGLVVKQMLHKAKTE 1081
++Y + L+ W A P++ S + +++GIG V++ LH T
Sbjct: 451 VEYDTTLSDWR-ARCPMERRSLL----SISSGIGE-------------VLESPLHSEAT- 491
Query: 1082 NIDNFVKNTVGLVFYSCPHFGSKLA 1106
NF+ ++ LV FG +A
Sbjct: 492 ---NFLGSSELLVLGIGRWFGYHIA 513
>sp|Q1J237|PDXY_DEIGD Pyridoxamine kinase OS=Deinococcus geothermalis (strain DSM 11300)
GN=pdxY PE=3 SV=1
Length = 299
Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 1123 GELRSGSSRLVELNDYIRHLHKKGVLEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYP 1182
G LR G RLV + +R +GV+E L+ V G G W R ++P++
Sbjct: 181 GTLREGGPRLVVVTSLVREDAPQGVIETLA---------VTGEGAWLCRTPLLPLDPPRN 231
Query: 1183 GFGDLV 1188
G GD +
Sbjct: 232 GTGDAI 237
>sp|Q8N1W1|ARG28_HUMAN Rho guanine nucleotide exchange factor 28 OS=Homo sapiens GN=ARHGEF28
PE=1 SV=3
Length = 1705
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 519 VVMDKGLQLMRDAAKRTTKHKEVQETLAKVLDMISTGDMRLS-LEESQKWSGIL 571
V++++ LQ ++ RT +HK++++ L + DMI+T D++++ E++QKW IL
Sbjct: 1008 VLVERILQYTKE---RTEEHKDLRKALCLIKDMIATVDLKVNEYEKNQKWLEIL 1058
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,045,829
Number of Sequences: 539616
Number of extensions: 18525980
Number of successful extensions: 67369
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 66739
Number of HSP's gapped (non-prelim): 493
length of query: 1224
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1095
effective length of database: 121,958,995
effective search space: 133545099525
effective search space used: 133545099525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)