BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000920
(1223 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224131798|ref|XP_002321181.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222861954|gb|EEE99496.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1234
Score = 1727 bits (4472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 857/1238 (69%), Positives = 994/1238 (80%), Gaps = 24/1238 (1%)
Query: 3 MAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGF-VIVGSICFLL 60
M++ CKL GS+ + S KL+K+ E L + + + LW LG V +GSI L
Sbjct: 1 MSINCKLSGSNGTS-QESFKLRKSKEVLHETNSARKWKRKFLLLWFLGVAVTIGSIWLLF 59
Query: 61 SCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPG 120
S D GA + + SCE+ AQ+ L+H NVS NQLHAL +LFS+SDQ+ASL CT+EPG
Sbjct: 60 SFDSGAL--GRKGQSLDSCEEGAQVLLRHFNVSKNQLHALGSLFSDSDQVASLDCTKEPG 117
Query: 121 SGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSVLKNIS 180
ML+++GI CA+KVP SKKQEFQ+ W+AEDV +CPV+D N KLD S+L +
Sbjct: 118 PEMLINDGIACALKVPCSKKQEFQQHIRWVAEDVGPNGKCPVQDENEFRKLDRSLLDESA 177
Query: 181 H---------------ARTWSNCTRDHFKILSFCLFKGCWWFICGMVVICIIVSLLFKSR 225
R +C DH K+ SF L K CWW + GM+V CI++ K
Sbjct: 178 SFVSQSTISSISQDFGKRREVDCAEDHCKLFSFDLVKECWWVLVGMIVSCILLGYNLKFW 237
Query: 226 RNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFW 285
R K QL+PV QQRQ +LQ Q Q + PPR AGKWR K+L++FVLLG+ +S+WLFW
Sbjct: 238 RKQNQKLVQLEPVPQQRQQLLQMNQHQLSHSPPRGAGKWRKKLLIIFVLLGVLVSIWLFW 297
Query: 286 LLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTF 345
L EK+ RR+ETLA+MCDERARMLQDQFNVSMNHVHALAILVSTFHH K+PSA+DQKTF
Sbjct: 298 HLHEKIISRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTF 357
Query: 346 GEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDP 405
GEYT+RT FERPLTSGVAYALKV H ER+QFE+QHGW IKKM TEDQTLVQDC P+ LDP
Sbjct: 358 GEYTKRTDFERPLTSGVAYALKVPHLERKQFEEQHGWTIKKMGTEDQTLVQDCIPDKLDP 417
Query: 406 APVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGV 465
AP+QDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLT PFKLLKSNHLGV
Sbjct: 418 APIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGV 477
Query: 466 VLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTN 525
VLTFAVYNTDLP DATPEQRI+AT+GYLGASYDVPSLVEKLLHQL+SKQTIVVNVYDTTN
Sbjct: 478 VLTFAVYNTDLP-DATPEQRIDATVGYLGASYDVPSLVEKLLHQLSSKQTIVVNVYDTTN 536
Query: 526 ASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITL 585
A+API MYG DVTDTGLL VS+LDFGDP RKHEMHCRFK KPP+PW AINAS+G++VITL
Sbjct: 537 ATAPILMYGTDVTDTGLLHVSSLDFGDPLRKHEMHCRFKHKPPLPWPAINASVGLLVITL 596
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
LVGHIFHAAINRIA+VE DY EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ
Sbjct: 597 LVGHIFHAAINRIAKVEEDYREMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 656
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
MLM+T+LD Q+DYA TAH SGKDLI+LIN+VLDQAKIESGRLE E VPF L VLDNVL
Sbjct: 657 MLMETDLDVNQMDYANTAHTSGKDLIALINEVLDQAKIESGRLELEAVPFDLRSVLDNVL 716
Query: 706 SLFSSKANQKGIE-LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH 764
SLFS K+N+KGIE LA+YVSDR+PEVVIGDPGRFRQIITNLVGNSIKFT+DKGH+FVSVH
Sbjct: 717 SLFSGKSNEKGIEKLAVYVSDRLPEVVIGDPGRFRQIITNLVGNSIKFTRDKGHVFVSVH 776
Query: 765 LADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQ 824
LAD+VRS +D +D VL++ L VQ S KVY++LSGFPVV+RWKSWE FK ++ ++
Sbjct: 777 LADEVRSPLDARDAVLKQGLELVQDTSSKVYDSLSGFPVVNRWKSWEKFKKSSCIDSRDE 836
Query: 825 LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGE 884
I+LLVTVEDTGVGIP +AQ IFTPFMQADSSTSR YGGTGIGLSIS+CLV+LMGGE
Sbjct: 837 PEMIRLLVTVEDTGVGIPEDAQGNIFTPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGE 896
Query: 885 IGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR 944
IGFVSE G GSTFSF V+F +GE SLD KWQ Y P V E RG RALVID++S+RAEVT+
Sbjct: 897 IGFVSECGIGSTFSFIVSFRKGESTSLDTKWQPYDPAVLEVRGGRALVIDERSVRAEVTK 956
Query: 945 YHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004
YHLQRL + VA S++ AC+YLS TS+ L +VLIDKD WDKE G+ H++LK
Sbjct: 957 YHLQRLGITADVAPSLKSACAYLSSGYCTSIPADLPIVLIDKDAWDKESGIAFHHLLKMP 1016
Query: 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESS 1063
++ G +I +L KIFLLAT+IS +R ELK+ G+V +L KPLRLSVLI CFQE S
Sbjct: 1017 KKNDGTDIQVDLSKIFLLATTISSDERLELKTSGLVDNVLVKPLRLSVLIACFQEAFGSG 1076
Query: 1064 KKLQQKRKK-PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
KK + RKK P+L +LL+GKQILVVDDN+VNRRVAEGALKKHGAIVTCV+ G+AA++KL
Sbjct: 1077 KKSEVNRKKPPALQNLLRGKQILVVDDNLVNRRVAEGALKKHGAIVTCVESGKAALEKLK 1136
Query: 1123 PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAM 1182
PPH+FDACFMD QMPEMDGF+AT QIR +E++ NE+IASG++S E+ GNV WH PILAM
Sbjct: 1137 PPHSFDACFMDFQMPEMDGFEATRQIRSMESQFNEKIASGKASMELPGNVAYWHTPILAM 1196
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
TADVIQA+NE+C+KCGMD YVSKPFEDE+LY AV RFF
Sbjct: 1197 TADVIQATNEECLKCGMDGYVSKPFEDEKLYNAVTRFF 1234
>gi|359485817|ref|XP_002269977.2| PREDICTED: histidine kinase 2-like [Vitis vinifera]
Length = 1272
Score = 1720 bits (4454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1251 (69%), Positives = 996/1251 (79%), Gaps = 32/1251 (2%)
Query: 1 MTMAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFL 59
+ M++ CKL G S RL A+ KLKK+ EPL G + V + R LWLLG VI+G ICFL
Sbjct: 26 LKMSLNCKLSGFSG-RLPANLKLKKSKEPLHGSNCVRKWRRKFLLLWLLG-VIIGLICFL 83
Query: 60 LSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREP 119
+ GA + +E+ CE+KA+I L+H NVS NQLH+LA+LF+ESDQIASL+CT+E
Sbjct: 84 SVLNAGAL--SRKEKTPDLCEEKARILLEHFNVSKNQLHSLASLFAESDQIASLECTKEA 141
Query: 120 GSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSVL--- 176
G M N I CA+KVP S+ QEF+KQ AE ++ DQCPV D N+ KLD S+L
Sbjct: 142 GFEMPPGNAIACALKVPCSQNQEFEKQHDQAAESLEPNDQCPVRDENIPGKLDLSLLGDQ 201
Query: 177 -----------------KNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMVVICIIVS 219
++ R +NCT++H + S CL K WW + GMVV C +
Sbjct: 202 SASFSSQSTSSSVSLDGQSGEKIRALANCTKEHCENFSLCLVKVGWWVLVGMVVSCKLSG 261
Query: 220 LLFKSRRNHKHKHDQLQPVSQQRQMI-----LQQKQQQQTPHPPRSAGKWRMKILVVFVL 274
K N K K + Q + +Q+ + L+ KQQQ + AGKWR K+L++FVL
Sbjct: 262 SHVKLWGNRKQKLVEQQKLVEQQSQVQQQRQLRPKQQQPAQSSSKVAGKWRKKLLIIFVL 321
Query: 275 LGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHR 334
LG+ IS+WLFW L + ++LRR+ETL +MCDERARMLQDQFNVSMNHVHALAILVSTFHH
Sbjct: 322 LGVIISIWLFWHLNKDINLRRRETLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHG 381
Query: 335 KHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTL 394
KHPSA+DQKTFGEYTERTAFERPLTSGVAYALKVLHSERE FEK+HGW IKKMETEDQTL
Sbjct: 382 KHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREHFEKEHGWTIKKMETEDQTL 441
Query: 395 VQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPP 454
VQDC ENLDP+P+QDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLT P
Sbjct: 442 VQDCILENLDPSPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSP 501
Query: 455 FKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQ 514
FKLLKSNHLGVVLTFAVYN DLP DATPEQRIEAT+GYLGASYDVPSLV+KLLHQLASKQ
Sbjct: 502 FKLLKSNHLGVVLTFAVYNADLPPDATPEQRIEATVGYLGASYDVPSLVKKLLHQLASKQ 561
Query: 515 TIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAI 574
TIVVNVYDTTNASAPINMYG +VTDTGLLR+SNLDFGDP+RKHEMHCRFKQKPP PWTAI
Sbjct: 562 TIVVNVYDTTNASAPINMYGTNVTDTGLLRISNLDFGDPARKHEMHCRFKQKPPPPWTAI 621
Query: 575 NASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIR 634
AS+GV+VITLLVGHIFHAAINRIA+VE DY +MMELK RAEAADVAKSQFLATVSHEIR
Sbjct: 622 TASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVAKSQFLATVSHEIR 681
Query: 635 TPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVP 694
TPMNGVLGML+MLMD+ LDA Q DYA+TAH SGKDLISLIN+VLDQAKIESGRLE E VP
Sbjct: 682 TPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEAVP 741
Query: 695 FHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQ 754
F L LDNVLSLFS K+++KGIELA+Y+SD+VPE VIGDPGRFRQIITNLVGNSIKFT
Sbjct: 742 FDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKFTH 801
Query: 755 DKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFK 814
DKGHIFVSVHLAD+V D++D+VL +SLN V S+ YNTLSGFPVV+RWKSWE FK
Sbjct: 802 DKGHIFVSVHLADEVVGPPDLRDEVLRQSLNIVHDSSNNSYNTLSGFPVVNRWKSWEKFK 861
Query: 815 MLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSIS 874
L T++ME+ IKLLVTVEDTGVGIP EAQ RIF PFMQADSSTSRTYGGTGIGLSIS
Sbjct: 862 KLSCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSIS 921
Query: 875 RCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVID 934
+ LV+LMGGEIGF SEPGTGSTFSFTV FT+GE + LD K Q + P SEF+ LRALV+D
Sbjct: 922 KRLVDLMGGEIGFESEPGTGSTFSFTVAFTKGETSLLDTKQQPHDPAGSEFQELRALVVD 981
Query: 935 DKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIG 994
+SIRAEVTRYHLQRL ++V S+ ACSYLS+ S +A+VL+DK+VWDKE G
Sbjct: 982 CRSIRAEVTRYHLQRLGISVDKTFSLISACSYLSNNSDPSASTSVAMVLVDKEVWDKEAG 1041
Query: 995 LVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLI 1053
LV H+MLK+ R G +E+ PKIFLL TS+S +R+ELKS G V +L KPLRLSVLI
Sbjct: 1042 LVFHHMLKELRPNGTVEVQEKRPKIFLLDTSLSSAERNELKSAGFVDNVLMKPLRLSVLI 1101
Query: 1054 GCFQEDPESSKKLQQKRKKP-SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVD 1112
CFQE K+ Q R KP +LG+LL+ K+ILVVDDN VNRRVAE ALKK+GAIVTCVD
Sbjct: 1102 SCFQEVFGIGKRKQANRGKPLTLGNLLREKRILVVDDNAVNRRVAEFALKKYGAIVTCVD 1161
Query: 1113 CGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNV 1172
G+AA+ L PPHNFDACFMDLQMPEMDGF+AT +IR +E+++NE+I SGE S EMF NV
Sbjct: 1162 SGKAALLMLKPPHNFDACFMDLQMPEMDGFRATQEIRRMESKVNERIKSGEVSIEMFANV 1221
Query: 1173 GLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
WH PILAMTADVIQA+NE+CMKCGMD YV+KPFE++QLY+AVA FF SG
Sbjct: 1222 AYWHTPILAMTADVIQANNEECMKCGMDGYVAKPFEEDQLYSAVAHFFESG 1272
>gi|147789780|emb|CAN76309.1| hypothetical protein VITISV_028333 [Vitis vinifera]
Length = 1400
Score = 1702 bits (4408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1276 (67%), Positives = 996/1276 (78%), Gaps = 57/1276 (4%)
Query: 1 MTMAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFL 59
+ M++ CKL G S RL A+ KLKK+ EPL G + V + R LWLLG VI+G ICFL
Sbjct: 40 LKMSLNCKLSGFSG-RLPANLKLKKSKEPLHGSNCVRKWRRKFLLLWLLG-VIIGLICFL 97
Query: 60 LSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQ---------- 109
+ GA + +E+ CE+KA+I L+H NVS NQLH+LA+LF+ESDQ
Sbjct: 98 XVLNAGAL--SRKEKTPDLCEEKARILLEHFNVSKNQLHSLASLFAESDQGQWDIDHKAN 155
Query: 110 ---------------IASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDV 154
IASL+CT+E G M N I CA+KVP S+ QEF+KQ AE +
Sbjct: 156 VEFFKYWQKKYKDGKIASLECTKEAGFEMPPGNAIACALKVPCSQNQEFEKQHDQAAESL 215
Query: 155 KQMDQCPVEDVNVSWKLDHSVL--------------------KNISHARTWSNCTRDHFK 194
+ DQCPV D N+ KLD S+L ++ R +NCT++H +
Sbjct: 216 EPNDQCPVRDENIPGKLDLSLLGDQSASFSSQSTSSSVSLDGQSGEKIRALANCTKEHCE 275
Query: 195 ILSFCLFKGCWWFICGMVVICIIVSLLFKSRRNHKHKHDQLQPVSQQRQMI-----LQQK 249
S CL K WW + GMVV C + K N K K + Q + +Q+ + L+ K
Sbjct: 276 NFSLCLVKVGWWVLVGMVVSCKLSGSHVKLWGNRKQKLVEQQKLVEQQSQVQQQRQLRPK 335
Query: 250 QQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARM 309
QQQ + AGKWR K+L++FVLLG+ IS+WLFW L + ++LRR+ETL +MCDERARM
Sbjct: 336 QQQPAQSSSKVAGKWRKKLLIIFVLLGVIISIWLFWHLNKDINLRRRETLTNMCDERARM 395
Query: 310 LQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVL 369
LQDQFNVSMNHVHALAILVSTFHH KHPSA+DQKTFGEYTERTAFERPLTSGVAYALKVL
Sbjct: 396 LQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVL 455
Query: 370 HSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSID 429
HSERE FE +HGW IKKMETEDQTLVQDC ENLDP+P+QDEYAPVIFSQETVSHIVSID
Sbjct: 456 HSEREHFENEHGWTIKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHIVSID 515
Query: 430 MMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEAT 489
MMSGKEDRENILRARASGKGVLT PFKLLKSNHLGVVLTFAVYN DLP DATPEQRIEAT
Sbjct: 516 MMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQRIEAT 575
Query: 490 LGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLD 549
+GYLGASYDVPSLV+KLLHQLASKQTIVVNVYDTTNASAPINMYG +VTDTGLLR+SNLD
Sbjct: 576 VGYLGASYDVPSLVKKLLHQLASKQTIVVNVYDTTNASAPINMYGTNVTDTGLLRISNLD 635
Query: 550 FGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMM 609
FGDP+RKHEMHCRFKQKPP PWTAI AS+GV+VITLLVGHIFHAAINRIA+VE DY +MM
Sbjct: 636 FGDPARKHEMHCRFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMM 695
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
ELK RAEAADVAKSQFLATVSHEIRTPMNGVLGML+MLMD+ LDA Q DYA+TAH SGKD
Sbjct: 696 ELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKD 755
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
LISLIN+VLDQAKIESGRLE E VPF L LDNVLSLFS K+++KGIELA+Y+SD+VPE
Sbjct: 756 LISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPE 815
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
VIGDPGRFRQIITNLVGNSIKFT DKGHIFVSVHLAD+V D++D+VL +SLN V
Sbjct: 816 FVIGDPGRFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVVGPPDLRDEVLRQSLNIVHD 875
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
S+ YNTLSGFPVV+RWKSWE FK L T++ME+ IKLLVTVEDTGVGIP EAQ RI
Sbjct: 876 SSNNSYNTLSGFPVVNRWKSWEKFKKLXCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRI 935
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
F PFMQADSSTSRTYGGTGIGLSIS+ LV+LMGGEIGF SEPGTGSTFSFTV FT+GE +
Sbjct: 936 FMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAFTKGETS 995
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
LD K Q + P SEF+GLRALV+D +SIRAEVTRYHLQRL ++V S+ ACSYLS+
Sbjct: 996 LLDTKQQPHDPAGSEFQGLRALVVDCRSIRAEVTRYHLQRLGISVDKTFSLISACSYLSN 1055
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
S +A+VL+DK+VWDKE GLV H+MLK+ R G +E+ PKIFLL TS+S
Sbjct: 1056 NSDPSASTSVAMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKRPKIFLLDTSLSSA 1115
Query: 1030 DRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP-SLGHLLKGKQILVV 1087
+R+ELKS G V +L KPLRLSVLI CFQE K+ Q R KP +LG+LL+ K+ILVV
Sbjct: 1116 ERNELKSAGFVDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGKPLTLGNLLREKRILVV 1175
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
DDN VNRRVAE ALKK+GAIVTCVD G+AA+ L PPHNFDACFMDLQMPEMDGF+AT +
Sbjct: 1176 DDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQMPEMDGFKATQE 1235
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR +E+++NE+I SGE S EMF NV WH PILAMTADVIQA+NE+CMKCGMD YV+KPF
Sbjct: 1236 IRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNEECMKCGMDGYVAKPF 1295
Query: 1208 EDEQLYTAVARFFMSG 1223
E++QLY+AVA FF SG
Sbjct: 1296 EEDQLYSAVAHFFESG 1311
>gi|190148355|gb|ACE63260.1| histidine kinase 2 [Betula pendula]
Length = 1260
Score = 1650 bits (4273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 843/1248 (67%), Positives = 968/1248 (77%), Gaps = 42/1248 (3%)
Query: 3 MAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFLLS 61
M++ CKL G + RL A SKLKK E L GP+ V + R L FLWL+ + +GSI S
Sbjct: 28 MSLDCKLSGFNG-RLPACSKLKKTKEQLHGPNSVRKWRRKLLFLWLIVVITLGSIWVFSS 86
Query: 62 CDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGS 121
+ G G + SC+ KAQI LQH NVS++QLHALA+LFSESDQI SL+C++ G
Sbjct: 87 LNAGTLTGKDMTPD--SCDGKAQILLQHFNVSNSQLHALASLFSESDQITSLQCSKNLGP 144
Query: 122 GMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSVL----- 176
M L N I CA+++P S QEF KQ W+AE+ + DQC V D + K D S+L
Sbjct: 145 KMPLSNSIACALRLPCSDMQEFHKQHRWIAENDEPKDQCSVRDEFIPRKFDLSMLDNTPM 204
Query: 177 -------------------KNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMVVICII 217
KNI + ++C ++H SF F W + +V++
Sbjct: 205 PFSSQSGTSSISANHQICGKNILLSSALADCAKEHCG--SFYTFLKVSWLLLVVVIVSRK 262
Query: 218 VSLL-FKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVFVLLG 276
+S L RN K K PV+QQ+Q QQ PP+ AGKWR K L++FVL G
Sbjct: 263 MSPLHLNFWRNQKKKLLHQLPVAQQQQQKQQQLAHS----PPKGAGKWRKKFLLLFVLNG 318
Query: 277 IAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKH 336
I +S+WLFW + +++ LRR+ETLA+MCDERARMLQDQFNVSMNHVHALAILVSTFHH KH
Sbjct: 319 ITMSIWLFWYMNQEIILRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKH 378
Query: 337 PSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQ 396
PSA+DQKTFGEYTERTAFERPLTSGVAYALKV HS REQFE+QHGW IKKMETEDQTLVQ
Sbjct: 379 PSAIDQKTFGEYTERTAFERPLTSGVAYALKVPHSMREQFERQHGWTIKKMETEDQTLVQ 438
Query: 397 DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFK 456
+C PENLDPAP+QDEYAPVIFSQETVSHIVSIDMMSGKEDR+NILRARA+GKGVLT PFK
Sbjct: 439 ECIPENLDPAPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRDNILRARATGKGVLTSPFK 498
Query: 457 LLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTI 516
LLKSNHLGVVLTFAVYNTDLP DATPE+RIEAT+GYLGASYDVPSLVEKLLHQLASKQ I
Sbjct: 499 LLKSNHLGVVLTFAVYNTDLPPDATPEKRIEATVGYLGASYDVPSLVEKLLHQLASKQMI 558
Query: 517 VVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINA 576
VVNVYDTT+AS+PINMYG DVTDTGLL SNLDFGDP RKHEMHCRFKQKPP+PWTAINA
Sbjct: 559 VVNVYDTTDASSPINMYGTDVTDTGLLHTSNLDFGDPLRKHEMHCRFKQKPPLPWTAINA 618
Query: 577 SIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTP 636
S+G++VITLLVGHIF+AAI+RIA+VE+DY +MMELK RAEAADVAKSQFLATVSHEIRTP
Sbjct: 619 SVGLLVITLLVGHIFYAAISRIAKVEDDYRKMMELKVRAEAADVAKSQFLATVSHEIRTP 678
Query: 637 MNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFH 696
MNGVLGMLQMLMDTELDA Q DYA+TAH SGKDLISLIN+VLD+AKIESGRLE E VPF
Sbjct: 679 MNGVLGMLQMLMDTELDAIQQDYAETAHASGKDLISLINEVLDRAKIESGRLELEAVPFD 738
Query: 697 LHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDK 756
L VLDNV SL S K+ +ELA+YVS+RVPEV+IGDPGRFRQIITNLVGNSIKFT+D
Sbjct: 739 LRAVLDNVSSLLSGKSYDIRMELAVYVSNRVPEVIIGDPGRFRQIITNLVGNSIKFTRDT 798
Query: 757 GHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKML 816
GHI +SVHLAD+V D+ D+V+ + L+SV SDK YNTLSGF VVDRWKSWE+FK L
Sbjct: 799 GHILISVHLADEVNGGPDMMDEVMRQGLSSVHEMSDKTYNTLSGFRVVDRWKSWEHFKKL 858
Query: 817 DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRC 876
N+ME+ IKLLVTVEDTGVGIPLEAQ RIFTPFMQADSSTSRTYGGTGIGLSI +C
Sbjct: 859 GCRNSMEEPEMIKLLVTVEDTGVGIPLEAQSRIFTPFMQADSSTSRTYGGTGIGLSICKC 918
Query: 877 LVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDK 936
LV+LMGGEIGFVSEPG GSTFSFT F + E + D K QQY P +SE RGLRALVID +
Sbjct: 919 LVDLMGGEIGFVSEPGVGSTFSFTGLFRKVEVTTPDTKCQQYEPALSELRGLRALVIDKR 978
Query: 937 SIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLV 996
IRAEVTRYHLQRL ++ + S++ ACSYLS C TSV + ++VLIDKDVWDKE L
Sbjct: 979 IIRAEVTRYHLQRLGISSDITFSLKSACSYLSSACDTSVSAKFSMVLIDKDVWDKETSLS 1038
Query: 997 LHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGC 1055
H LK + EI NLPKIFLLATSI + + ELKS G+V +L KPLRL VL C
Sbjct: 1039 FHLSLKDHGQNSRTEIPINLPKIFLLATSIGQDEHTELKSAGVVDNVLIKPLRLGVLGAC 1098
Query: 1056 FQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
QE ++ ++K +LG LL+ K+ILVVDDN VNRRVAEGALKK+GAIVTCV+ G+
Sbjct: 1099 LQE--ALGRRKVNRKKSSTLGSLLREKRILVVDDNAVNRRVAEGALKKYGAIVTCVESGK 1156
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
AA+ L PPHNFDACFMDLQMPEMDGF+AT +IR LE+E NE++A S EMFGNV W
Sbjct: 1157 AALAMLKPPHNFDACFMDLQMPEMDGFEATRRIRSLESEANEEVA----SREMFGNVAYW 1212
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
H PILAMTADVI +SNE+CMKCGMDDYVSKPFE+ QLY+AVARFF SG
Sbjct: 1213 HTPILAMTADVIHSSNEECMKCGMDDYVSKPFEEGQLYSAVARFFESG 1260
>gi|296085009|emb|CBI28424.3| unnamed protein product [Vitis vinifera]
Length = 1203
Score = 1647 bits (4266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 841/1249 (67%), Positives = 965/1249 (77%), Gaps = 74/1249 (5%)
Query: 3 MAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFLLS 61
M++ CKL G S RL A+ KLKK+ EPL G + V + R LWLLG VI+G ICFL
Sbjct: 1 MSLNCKLSGFSG-RLPANLKLKKSKEPLHGSNCVRKWRRKFLLLWLLG-VIIGLICFLSV 58
Query: 62 CDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGS 121
+ GA + +E+ CE+KA+I L+H NVS NQLH+LA+LF+ESDQIASL+CT+E G
Sbjct: 59 LNAGAL--SRKEKTPDLCEEKARILLEHFNVSKNQLHSLASLFAESDQIASLECTKEAGF 116
Query: 122 GMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSVL----- 176
M N I CA+KVP S+ QEF+KQ AE ++ DQCPV D N+ KLD S+L
Sbjct: 117 EMPPGNAIACALKVPCSQNQEFEKQHDQAAESLEPNDQCPVRDENIPGKLDLSLLGDQSA 176
Query: 177 ---------------KNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMVVICIIVSLL 221
++ R +NCT++H + S CL K WW + GMVV C +
Sbjct: 177 SFSSQSTSSSVSLDGQSGEKIRALANCTKEHCENFSLCLVKVGWWVLVGMVVSCKLSGSH 236
Query: 222 FKSRRNHKHKHDQLQPVSQQRQMI-----LQQKQQQQTPHPPRSAGKWRMKILVVFVLLG 276
K N K K + Q + +Q+ + L+ KQQQ + AGKWR K+L++FVLLG
Sbjct: 237 VKLWGNRKQKLVEQQKLVEQQSQVQQQRQLRPKQQQPAQSSSKVAGKWRKKLLIIFVLLG 296
Query: 277 IAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKH 336
+ IS+WLFW L + ++LRR+ETL +MCDERARMLQDQFNVSMNHVHALAILVSTFHH KH
Sbjct: 297 VIISIWLFWHLNKDINLRRRETLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKH 356
Query: 337 PSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQ 396
PSA+DQKTFGEYTERTAFERPLTSGVAYALKVLHSERE FEK+HGW IKKMETEDQTLVQ
Sbjct: 357 PSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREHFEKEHGWTIKKMETEDQTLVQ 416
Query: 397 DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFK 456
DC ENLDP+P+QDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLT PFK
Sbjct: 417 DCILENLDPSPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFK 476
Query: 457 LLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTI 516
LLKSNHLGVVLTFAVYN DLP DATPEQRIEAT+GYLGASYDVPSLV+KLLHQLASKQTI
Sbjct: 477 LLKSNHLGVVLTFAVYNADLPPDATPEQRIEATVGYLGASYDVPSLVKKLLHQLASKQTI 536
Query: 517 VVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINA 576
VVNVYDTTNASAPINMYG +VTDTGLLR+SNLDFGDP+RKHEMHCRFKQKPP PWTAI A
Sbjct: 537 VVNVYDTTNASAPINMYGTNVTDTGLLRISNLDFGDPARKHEMHCRFKQKPPPPWTAITA 596
Query: 577 SIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTP 636
S+GV+VITLLVGHIFHAAINRIA+VE DY +MMELK RAEAADVAKSQFLATVSHEIRTP
Sbjct: 597 SVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVAKSQFLATVSHEIRTP 656
Query: 637 MNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFH 696
MNGVLGML+MLMD+ LDA Q DYA+TAH SGKDLISLIN+VLDQAKIESGRLE E VPF
Sbjct: 657 MNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEAVPFD 716
Query: 697 LHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDK 756
L LDNVLSLFS K+++KGIELA+Y+SD+VPE VIGDPGRFRQIITNLVGNSIKFT DK
Sbjct: 717 LRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKFTHDK 776
Query: 757 GHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKML 816
GHIFVSVHLAD+V+ FK L
Sbjct: 777 GHIFVSVHLADEVK------------------------------------------FKKL 794
Query: 817 DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRC 876
T++ME+ IKLLVTVEDTGVGIP EAQ RIF PFMQADSSTSRTYGGTGIGLSIS+
Sbjct: 795 SCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKR 854
Query: 877 LVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDK 936
LV+LMGGEIGF SEPGTGSTFSFTV FT+GE + LD K Q + P SEF+ LRALV+D +
Sbjct: 855 LVDLMGGEIGFESEPGTGSTFSFTVAFTKGETSLLDTKQQPHDPAGSEFQELRALVVDCR 914
Query: 937 SIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLV 996
SIRAEVTRYHLQRL ++V S+ ACSYLS+ S +A+VL+DK+VWDKE GLV
Sbjct: 915 SIRAEVTRYHLQRLGISVDKTFSLISACSYLSNNSDPSASTSVAMVLVDKEVWDKEAGLV 974
Query: 997 LHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGC 1055
H+MLK+ R G +E+ PKIFLL TS+S +R+ELKS G V +L KPLRLSVLI C
Sbjct: 975 FHHMLKELRPNGTVEVQEKRPKIFLLDTSLSSAERNELKSAGFVDNVLMKPLRLSVLISC 1034
Query: 1056 FQEDPESSKKLQQKRKKP-SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCG 1114
FQE K+ Q R KP +LG+LL+ K+ILVVDDN VNRRVAE ALKK+GAIVTCVD G
Sbjct: 1035 FQEVFGIGKRKQANRGKPLTLGNLLREKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSG 1094
Query: 1115 RAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL 1174
+AA+ L PPHNFDACFMDLQMPEMDGF+AT +IR +E+++NE+I SGE S EMF NV
Sbjct: 1095 KAALLMLKPPHNFDACFMDLQMPEMDGFRATQEIRRMESKVNERIKSGEVSIEMFANVAY 1154
Query: 1175 WHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
WH PILAMTADVIQA+NE+CMKCGMD YV+KPFE++QLY+AVA FF SG
Sbjct: 1155 WHTPILAMTADVIQANNEECMKCGMDGYVAKPFEEDQLYSAVAHFFESG 1203
>gi|356553458|ref|XP_003545073.1| PREDICTED: histidine kinase 2-like [Glycine max]
Length = 1225
Score = 1535 bits (3974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 794/1240 (64%), Positives = 937/1240 (75%), Gaps = 54/1240 (4%)
Query: 12 SSSSRLSASSKLKKASEPLQGPD--RVNRRSTLAFLWLLGFVIVGSICFLLSCDGGAFVG 69
+S+ RL ++ K K +EPL G + R RR L LW GFV +GS+ F+LS + V
Sbjct: 9 ASNGRLLSNMKSWKLNEPLNGSNSPRTCRRKPL-LLWFFGFVAIGSVWFILSFNSKYLVS 67
Query: 70 NEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGSGMLLHNGI 129
E E CE++ + LQ NVS Q+HALA+LFS SDQI S C E MLL +G+
Sbjct: 68 KENEA---ICEERERALLQRYNVSRKQIHALASLFSGSDQILS-NCIDERRLQMLLSSGM 123
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLD-------------HSVL 176
++ + QE QK +A+ V+ ++QCPV + V +L+ HS L
Sbjct: 124 VSTPQLICPENQELQKVHTCVADTVEPIEQCPVLNDCVQTRLELSFPLKSYVSLASHSAL 183
Query: 177 -----------KNISHARTWS-NCTRDHFKILSFCLFKGCWWFICGMVVICIIVSLLFKS 224
KNI ++W + + S L KGCWW V+I I +S
Sbjct: 184 PTDLVSYLHRGKNI--VQSWELRVSAIRYHASSSNLIKGCWW-----VLIGITMSYFCLL 236
Query: 225 RRNHKHKHDQLQPVSQQRQMILQQKQQQQTPH-PPRSAGKWRMKILVVFVLLGIAISVWL 283
RN K K Q P +QQ+ + + P P R AG+WR K+LV+FV LGI S WL
Sbjct: 237 WRNQKQKLVQGHPAAQQKCL-------KHFPRGPSRGAGRWRKKLLVIFVSLGIIGSFWL 289
Query: 284 FWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQK 343
FW L + RR+ETLA+MCDERARMLQDQFNVSMNHVHALAILVSTFHH KHPSA+DQK
Sbjct: 290 FWHLNTGIMRRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQK 349
Query: 344 TFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENL 403
FGEYTE TAFERPLTSGVAYALKVLHS+R FEKQHGW IKKMETE++ LVQDC PENL
Sbjct: 350 IFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPENL 409
Query: 404 DPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHL 463
DPAP+QDEYAPVIF+QETVSHIVSIDMMSGKEDRENILRARASGKGVLT PFKLLKSNHL
Sbjct: 410 DPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHL 469
Query: 464 GVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDT 523
GVVLTFAVYNT+LP DAT EQRIEAT+GYLGASYDVPSLV+KLLHQLASKQTIVVNVYDT
Sbjct: 470 GVVLTFAVYNTNLPLDATLEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDT 529
Query: 524 TNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVI 583
TNASAPI MYG DV DTGLL +S+LDFGDP RKHEMHC FKQ+PP+PWTAINAS+GV VI
Sbjct: 530 TNASAPITMYGTDVADTGLLYISSLDFGDPLRKHEMHCSFKQRPPLPWTAINASVGVFVI 589
Query: 584 TLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGM 643
TLL+GHIF+AAINRIA+VE+DY +M ELK RAEAADVAKSQFLATVSHEIRTPMNGVLGM
Sbjct: 590 TLLLGHIFYAAINRIAKVEDDYRQMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGM 649
Query: 644 LQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDN 703
LQMLMDTELD Q+D AQTAH SGKDLIS+I++VLDQAKIE+G+LE E V F +LD
Sbjct: 650 LQMLMDTELDENQMDCAQTAHKSGKDLISVISEVLDQAKIEAGKLELEAVAFDPRAILDE 709
Query: 704 VLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
+LSLFS K+N+KGIELA+Y S++VP+VVIGDP RFRQIITNLVGNS+KFT DKGH+FVSV
Sbjct: 710 ILSLFSEKSNEKGIELAVYASNQVPKVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSV 769
Query: 764 HLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME 823
HLA++V++ + + D VL + LN Q S++ Y+TLSGFPV +RWKSW NFK L N E
Sbjct: 770 HLANEVKNPLHIMDAVLREGLNLNQDISNRTYDTLSGFPVCNRWKSWANFKQLSGINEPE 829
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
I+LLV VEDTG+GIP +AQ RIFTPFMQADSSTSRTYGGTGIGLSIS+CLV+LMGG
Sbjct: 830 I---IQLLVIVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGG 886
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
EIGFVSEPG GSTFSFT TF +GE SLD QQ SEF+GLR LV+D + IRAEVT
Sbjct: 887 EIGFVSEPGIGSTFSFTGTFRKGESTSLDAM-QQNNHFGSEFQGLRTLVVDSRKIRAEVT 945
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
RYHLQRL M+V V S+ ACS LS+ C+ S+ QLA++LIDKD WDKE ++ Y +K+
Sbjct: 946 RYHLQRLGMSVDVTYSLNSACSCLSNVCNKSMSTQLAMILIDKDAWDKECHIL--YTIKK 1003
Query: 1004 QRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPES 1062
+R+ G NLPKIFLLAT +S ++D LKS GI+ +L KPL LS LI C++ +
Sbjct: 1004 RRQNGIKGDPMNLPKIFLLATHLSSNEQDGLKSVGIIDDILMKPLWLSSLIQCYRVSLGT 1063
Query: 1063 SKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
K ++K LG+LL KQILVVDDN VNRRVA+G L+K+GA VT V+ GRAA+ L
Sbjct: 1064 ENKRVNRKKVSKLGNLLIDKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLK 1123
Query: 1123 PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAM 1182
PHNFDACFMDLQMPEMDGF+AT QIR LE+E+NE+IA G++SAEMFG++ WH+PILAM
Sbjct: 1124 LPHNFDACFMDLQMPEMDGFEATRQIRCLESEVNEKIACGQASAEMFGSISYWHIPILAM 1183
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
TAD Q+SNE+C+KCGMDDYVSKPFE+E+LY A+ARFF S
Sbjct: 1184 TADSTQSSNEECIKCGMDDYVSKPFEEEKLYMAMARFFKS 1223
>gi|356499485|ref|XP_003518570.1| PREDICTED: histidine kinase 2-like [Glycine max]
Length = 1282
Score = 1528 bits (3955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 785/1230 (63%), Positives = 934/1230 (75%), Gaps = 46/1230 (3%)
Query: 12 SSSSRLSASSKLKKASEPLQGPD--RVNRRSTLAFLWLLGFVIVGSICFLLSCDGGAFVG 69
+S+ RL ++ K K +EPL G + R RR L LW GFV +G++ F+LS + +
Sbjct: 78 ASNGRLLSNMKSWKLNEPLHGSNCPRACRRKPL-LLWFFGFVAIGTVWFILSFNSKYLMS 136
Query: 70 NEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGSGMLLHNGI 129
E E CE++ +I LQ NVS Q+HALA+L S SDQI S C E MLL +G+
Sbjct: 137 KENEA---ICEERERILLQRYNVSRKQIHALASLLSGSDQILS-NCIDERRLQMLLGSGM 192
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSV-LKN---------- 178
++ + QE QK+ + + V+ ++QCP+ D V +L+ S LKN
Sbjct: 193 VSTPQLMCPENQELQKEHTCVVDTVEPIEQCPILDDYVQTRLELSFPLKNYVSLALRSAL 252
Query: 179 ---ISHARTWS-NCTRDHFKILSFCLFKGCWWFICGMVVICIIVSLLFKSRRNHKHKHDQ 234
++ ++W + + + S L KGCWW VI II+S R+ K K Q
Sbjct: 253 STDLNTVQSWELRVSAIRYHVSSSNLIKGCWW------VIGIIMSYFCLLWRSQKQKLVQ 306
Query: 235 LQPVSQQRQMILQQKQQQQTPH-PPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHL 293
P +QQ+Q+ + P P R G+WR K+LV+FV LGI S WLFW L +
Sbjct: 307 GHPGAQQKQL-------KHFPRGPSRGTGRWRKKLLVIFVSLGIIGSFWLFWHLNTGIMQ 359
Query: 294 RRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTA 353
RR+ETLA+MCDERARMLQDQFNVSMNHVHALAILVSTFHH KHPSA+DQK FGEYTE TA
Sbjct: 360 RREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTA 419
Query: 354 FERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYA 413
FERPLTSGVAYALKVLHS+R FEKQHGW IKKMETE++ LVQDC PE LDPAP+QDEYA
Sbjct: 420 FERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPEKLDPAPIQDEYA 479
Query: 414 PVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYN 473
PVIF+QETVSHIVSIDMMSGKED ENILRARASGKGVLT PFKLLKSNHLGVVLTFAVYN
Sbjct: 480 PVIFAQETVSHIVSIDMMSGKEDHENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYN 539
Query: 474 TDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMY 533
T+LP DATPEQR EAT+GYLGASYDVPSLV+KLLHQLASKQTIVVNVYDTTNASAPI MY
Sbjct: 540 TNLPLDATPEQRTEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMY 599
Query: 534 GPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHA 593
G DV DTGLL +S+LDFGDP RKHEMHCRFKQ+PP+PWTAINAS+GV VITLL+GHIF+A
Sbjct: 600 GTDVADTGLLHISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVFVITLLLGHIFYA 659
Query: 594 AINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 653
AINRIA+VE DY +M ELK RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD
Sbjct: 660 AINRIAKVEADYRQMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 719
Query: 654 AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKAN 713
Q+D AQTAH SGKDLIS+I++VLDQAKIE+G+LE E V F +LD VLSLFS K+N
Sbjct: 720 ENQMDCAQTAHKSGKDLISVISEVLDQAKIEAGKLELEAVAFDPRAILDEVLSLFSEKSN 779
Query: 714 QKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773
+KGIELA+Y S++VP+VVIGDP RFRQIITNLVGNS+KFT DKGH+FVSVHLA +V++ +
Sbjct: 780 EKGIELAVYASNQVPKVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSVHLASEVKNPL 839
Query: 774 DVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVT 833
+ D VL + LN Q +++ Y+TLSGFPV +RWKSW NF L TN E I+LLV
Sbjct: 840 HIMDAVLREGLNLSQDITNRTYDTLSGFPVCNRWKSWANFTKLSGTNEPEI---IQLLVI 896
Query: 834 VEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGT 893
VEDTG+GIP +AQ RIFTPFMQADSSTSRTYGGTGIGLSISRCLV+LMGGEIGFVSEPG
Sbjct: 897 VEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISRCLVDLMGGEIGFVSEPGI 956
Query: 894 GSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
GSTFSFT TF +GE SLD +Q SEF+ LR LV+D + IRAEVT+YHLQRL M+
Sbjct: 957 GSTFSFTGTFRKGESTSLDAM-RQNNHFGSEFQELRTLVVDRRKIRAEVTKYHLQRLGMS 1015
Query: 954 VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
V V S+ ACS LS+ C+ S+ LA++LIDKD WDKE ++ Y +K++R+ G
Sbjct: 1016 VDVTYSLNSACSCLSNVCNMSM---LAMILIDKDAWDKEYHIL--YTIKKRRQNGIKGDP 1070
Query: 1014 RNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK 1072
NLPKIFLLAT +S ++DELKS G++ +L KPL S LI C++E + K ++K
Sbjct: 1071 LNLPKIFLLATHLSSNEQDELKSVGVIDDILMKPLWFSSLIQCYRESLGTENKRVNRKKV 1130
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
LG+LL KQILVVDDN VNRRVA+G L+K+GA VT V+ GRAA+ L PHNFDACFM
Sbjct: 1131 SKLGNLLIDKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLELPHNFDACFM 1190
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
DLQMPEMDGF+AT +IR LE+E+NE+IA G++SAEMFGN+ WH+PILAMTAD Q+SNE
Sbjct: 1191 DLQMPEMDGFEATRKIRCLESEVNEKIACGQASAEMFGNISYWHIPILAMTADSTQSSNE 1250
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+C+KCGM+DYVSKPFE+EQLY A+ARFF S
Sbjct: 1251 ECIKCGMNDYVSKPFEEEQLYMAMARFFKS 1280
>gi|449444494|ref|XP_004140009.1| PREDICTED: histidine kinase 2-like [Cucumis sativus]
Length = 1240
Score = 1492 bits (3862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 773/1250 (61%), Positives = 929/1250 (74%), Gaps = 45/1250 (3%)
Query: 3 MAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFLL- 60
M+++CK S++ + A KLKKA E L + + + L + +IV S F
Sbjct: 1 MSLSCKF-SSANGKFPAGFKLKKAKEHLGLLNSTGKWKKKLLCHRIFVLIIVLSSWFSFR 59
Query: 61 --SCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTRE 118
+ + G +++ +++ + L+H NVS NQL ALA+L S+SD+++S+ CT +
Sbjct: 60 WYNVNNGT-----KQKASNLFDEETRTLLRHFNVSKNQLQALASLLSDSDRMSSIGCTND 114
Query: 119 PGSGMLLHNGITCAMKVPYSKKQEFQKQSIWL--AEDVKQMDQCPV-------------- 162
GS NGI CA+++ Y + Q K+ +W +ED + +CP+
Sbjct: 115 FGSDTSQLNGIACALRLLYWE-QGLHKEYVWAEGSED-SNVGECPIPTKKITENSSQLFS 172
Query: 163 EDVNVSWKLDHSV----------LKNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMV 212
+++ V + + SV K A S R H K S L GC+ + ++
Sbjct: 173 DNITVPFATNLSVSLLSTGNQLCRKITEQAGVLSCLLRKHLKNFS-SLLIGCFCVLLEVI 231
Query: 213 VICIIVSLLFKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVF 272
V I K N KH QP+ Q+ ++L++KQ QQ P+ AGKWR +L +F
Sbjct: 232 VFQKISGFHLK-LWNKKHPKSN-QPLDHQQWVLLRRKQHQQVKESPKGAGKWRKVLLRIF 289
Query: 273 VLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFH 332
+++GI SVWLF L + LRR+ETLA+MCDERARMLQDQFNVSMNHVHALA+L STFH
Sbjct: 290 IVVGIVGSVWLFRYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFH 349
Query: 333 HRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQ 392
H K PSA+DQKTFGEYTERTAFERPLTSGVAYALKV HSERE FE HGW IKKMETEDQ
Sbjct: 350 HGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFEVMHGWTIKKMETEDQ 409
Query: 393 TLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLT 452
TLVQDC PENL+PAP++DEYAPVIFSQETV+HIVSIDMMSGKEDRENILRARASGKGVLT
Sbjct: 410 TLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLT 469
Query: 453 PPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLAS 512
PFKLLKSNHLGVVLTFAVY+TDLP DATPEQRIEAT+GYLGASYD+PSLVEKLLHQLAS
Sbjct: 470 SPFKLLKSNHLGVVLTFAVYSTDLPLDATPEQRIEATVGYLGASYDIPSLVEKLLHQLAS 529
Query: 513 KQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWT 572
KQTIVVNVYDTTN SAPINMYG D TDTGLL +S LDFGDP R+HEMHCRFK KPP PWT
Sbjct: 530 KQTIVVNVYDTTNESAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWT 589
Query: 573 AINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHE 632
AIN+S+GV++ITLLVGHIFHAAI+RIA+VENDYH+MM+LK+ AEAADVAKSQFLATVSHE
Sbjct: 590 AINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMDLKSLAEAADVAKSQFLATVSHE 649
Query: 633 IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEF 692
IRTPMNGVLGML++LMDT LD+ QLD+AQTAH SGKDLISLIN VLDQAKIESG LE E
Sbjct: 650 IRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHESGKDLISLINKVLDQAKIESGSLELES 709
Query: 693 VPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKF 752
VPF L D++D V+S FS K+N+KGIELA+YVSD VPEVVIGD GRFRQIIT+LVGNS+KF
Sbjct: 710 VPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSDLVPEVVIGDHGRFRQIITHLVGNSLKF 769
Query: 753 TQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812
T +KGHI VSVHLAD+VR+ VD D VL++ V S+ T SG PVVDRWKSWE+
Sbjct: 770 THNKGHILVSVHLADEVRATVDFMDIVLKQGSYIVGDTSNNSCTTFSGLPVVDRWKSWED 829
Query: 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
FK T+ +E+ I++LVTVEDTGVGIP AQ RIFTPFMQADSSTSRTYGGTGIGLS
Sbjct: 830 FKKFGRTDVVEESKMIRILVTVEDTGVGIPQNAQSRIFTPFMQADSSTSRTYGGTGIGLS 889
Query: 873 ISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALV 932
IS+ LV+LM GEIGFVSEPG GSTFSFTV+F +GE + LD + QY V EF+GLRAL+
Sbjct: 890 ISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGETSILDTRQPQYDVGVREFQGLRALI 949
Query: 933 IDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE 992
ID+ IRAEVTRYHLQRL ++V + S Q A YLS+T T QLA++LID+D+WDK+
Sbjct: 950 IDNSCIRAEVTRYHLQRLGISVDITLSAQSAYQYLSNTSHTRASTQLAMILIDRDIWDKK 1009
Query: 993 IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSV 1051
+GL H++ K+ + G ++ N PK+F+LAT S + +ELKS G V +L+KPL+L
Sbjct: 1010 MGLKFHHLFKEHVDRSGTDVQMNGPKLFVLATPKSSNEHNELKSSGHVNNVLSKPLQLDA 1069
Query: 1052 LIGCFQEDPESSKKLQQKRKKPS-LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTC 1110
L+ CF+E K+ Q KKPS L +LLK K ILVVDDN VN RVAEGALKK+GAIVTC
Sbjct: 1070 LVSCFREAFGIEKRNQVIIKKPSTLRNLLKEKHILVVDDNAVNIRVAEGALKKYGAIVTC 1129
Query: 1111 VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFG 1170
V CG+ AV L PPHNFDACFMDLQMPEMDG++AT Q+R +E +N +I SGE S E
Sbjct: 1130 VKCGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVECGVNAKITSGEVSIE--N 1187
Query: 1171 NVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
N WH PI AMTAD+IQ NE+C+KCGMD YV+KPFE+EQLY+AVARFF
Sbjct: 1188 NKIHWHTPIFAMTADLIQDMNEECLKCGMDGYVAKPFEEEQLYSAVARFF 1237
>gi|449505124|ref|XP_004162383.1| PREDICTED: histidine kinase 2-like [Cucumis sativus]
Length = 1240
Score = 1491 bits (3859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 773/1250 (61%), Positives = 928/1250 (74%), Gaps = 45/1250 (3%)
Query: 3 MAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFLL- 60
M+++CK S++ + A KLKKA E L + + + L + +IV S F
Sbjct: 1 MSLSCKF-SSANGKFPAGFKLKKAKEHLGLLNSTGKWKKKLLCHRIFVLIIVLSSWFSFR 59
Query: 61 --SCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTRE 118
+ + G +++ +++ + L+H NVS NQL ALA+L S+SD+++S+ CT +
Sbjct: 60 WYNVNNGT-----KQKASNLFDEETRTLLRHFNVSKNQLQALASLLSDSDRMSSIGCTND 114
Query: 119 PGSGMLLHNGITCAMKVPYSKKQEFQKQSIWL--AEDVKQMDQCPV-------------- 162
GS NGI CA+++ Y + Q K+ +W +ED + +CP+
Sbjct: 115 FGSDTSQLNGIACALRLLYWE-QGLHKEYVWAEGSED-SNVGECPIPTKKITENSSQLFS 172
Query: 163 EDVNVSWKLDHSV----------LKNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMV 212
+++ V + + SV K A S R H K S L GC+ + ++
Sbjct: 173 DNITVPFATNLSVSLLSAGNQLCRKITEQAGVLSCLLRKHLKNFS-SLLIGCFCVLLEVI 231
Query: 213 VICIIVSLLFKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVF 272
V I K N KH QP+ Q+ ++L++KQ QQ P+ AGKWR +L +F
Sbjct: 232 VFQKISGFHLK-LWNKKHPKSN-QPLDHQQWVLLRRKQHQQVKESPKGAGKWRKVLLRIF 289
Query: 273 VLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFH 332
+++GI SVWLF L + LRR+ETLA+MCDERARMLQDQFNVSMNHVHALA+L STFH
Sbjct: 290 IVVGIVGSVWLFRYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFH 349
Query: 333 HRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQ 392
H K PSA+DQKTFGEYTERTAFERPLTSGVAYALKV HSERE FE HGW IKKMETEDQ
Sbjct: 350 HGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFEVMHGWTIKKMETEDQ 409
Query: 393 TLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLT 452
TLVQDC PENL+PAP++DEYAPVIFSQETV+HIVSIDMMSGKEDRENILRARASGKGVLT
Sbjct: 410 TLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLT 469
Query: 453 PPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLAS 512
PFKLLKSNHLGVVLTFAVY+TDLP DATPEQRIEAT+GYLGASYD+PSLVEKLLHQLAS
Sbjct: 470 SPFKLLKSNHLGVVLTFAVYSTDLPLDATPEQRIEATVGYLGASYDIPSLVEKLLHQLAS 529
Query: 513 KQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWT 572
KQTIVVNVYDTTN SAPINMYG D TDTGLL +S LDFGDP R+HEMHCRFK KPP PWT
Sbjct: 530 KQTIVVNVYDTTNESAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWT 589
Query: 573 AINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHE 632
AIN+S+GV++ITLLVGHIFHAAI+RIA+VENDYH+MM+LK+ AEAADVAKSQFLATVSHE
Sbjct: 590 AINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMDLKSLAEAADVAKSQFLATVSHE 649
Query: 633 IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEF 692
IRTPMNGVLGML++LMDT LD+ QLD+AQTAH SGKDLISLIN VLDQAKIESG LE E
Sbjct: 650 IRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHESGKDLISLINKVLDQAKIESGSLELES 709
Query: 693 VPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKF 752
VPF L D++D V+S FS K+N+KGIELA+YVSD VPEVVIGD GRFRQIIT+LVGNS+KF
Sbjct: 710 VPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSDLVPEVVIGDHGRFRQIITHLVGNSLKF 769
Query: 753 TQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812
T +KGHI VSVHLAD+VR VD D VL++ V S+ T SG PVVDRWKSWE+
Sbjct: 770 THNKGHILVSVHLADEVRGTVDFMDIVLKQGSYIVGDTSNNSCTTFSGLPVVDRWKSWED 829
Query: 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
FK T+ +E+ I++LVTVEDTGVGIP AQ RIFTPFMQADSSTSRTYGGTGIGLS
Sbjct: 830 FKKFGRTDVVEESKMIRILVTVEDTGVGIPQNAQSRIFTPFMQADSSTSRTYGGTGIGLS 889
Query: 873 ISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALV 932
IS+ LV+LM GEIGFVSEPG GSTFSFTV+F +GE + LD + QY V EF+GLRAL+
Sbjct: 890 ISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGETSILDTRQPQYDVGVREFQGLRALI 949
Query: 933 IDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE 992
ID+ IRAEVTRYHLQRL ++V + S Q A YLS+T T QLA++LID+D+WDK+
Sbjct: 950 IDNSCIRAEVTRYHLQRLGISVDITLSAQSAYQYLSNTSHTRASTQLAMILIDRDIWDKK 1009
Query: 993 IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSV 1051
+GL H++ K+ + G ++ N PK+F+LAT S + +ELKS G V +L+KPL+L
Sbjct: 1010 MGLKFHHLFKEHVDRSGTDVQMNGPKLFVLATPKSSNEHNELKSSGHVNNVLSKPLQLDA 1069
Query: 1052 LIGCFQEDPESSKKLQQKRKKPS-LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTC 1110
L+ CF+E K+ Q KKPS L +LLK K ILVVDDN VN RVAEGALKK+GAIVTC
Sbjct: 1070 LVSCFREAFGIEKRNQVIIKKPSTLRNLLKEKHILVVDDNAVNIRVAEGALKKYGAIVTC 1129
Query: 1111 VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFG 1170
V CG+ AV L PPHNFDACFMDLQMPEMDG++AT Q+R +E +N +I SGE S E
Sbjct: 1130 VKCGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVECGVNAKITSGEVSIE--N 1187
Query: 1171 NVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
N WH PI AMTAD+IQ NE+C+KCGMD YV+KPFE+EQLY+AVARFF
Sbjct: 1188 NKIHWHTPIFAMTADLIQDMNEECLKCGMDGYVAKPFEEEQLYSAVARFF 1237
>gi|357495343|ref|XP_003617960.1| Histidine kinase cytokinin receptor [Medicago truncatula]
gi|355519295|gb|AET00919.1| Histidine kinase cytokinin receptor [Medicago truncatula]
Length = 1269
Score = 1467 bits (3799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 754/1206 (62%), Positives = 906/1206 (75%), Gaps = 50/1206 (4%)
Query: 38 RRSTLAFLWLLGF-VIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQ 96
R+ L W+ G V++GS+ F+ S + E +CEK AQ LQ NVS Q
Sbjct: 34 RKLFLLLFWVFGVAVVIGSVWFVFSTFNFKHLIKE-----TACEKSAQTLLQRYNVSKKQ 88
Query: 97 LHALATLFSESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQ 156
LH LA+LFS SDQI S C E MLL + I ++ K + QK+ ++AE V
Sbjct: 89 LHVLASLFSGSDQILS-NCIDERRLQMLLSSDIINTPQLMCPKNLDLQKEHRYVAESV-- 145
Query: 157 MDQCPVEDVNVSWKLDHSV-----LKNISHARTWSNCTRDHFKILSFC----------LF 201
+QCP+ D V +L S + +S + K++ C L
Sbjct: 146 -EQCPILDDFVHMRLGLSFPWKAYVTLVSALLSDLVSVLLRGKVMRVCAVVDNVNLSSLI 204
Query: 202 KGCWWFICGMVV------ICIIVSLLFKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTP 255
KGC + G+++ C++ RRN K K + P + Q+++ Q
Sbjct: 205 KGCCLVLIGIILSHKLSGFCLL-------RRNQKQKVVKEHPTAPQKRI-----QHCMLG 252
Query: 256 HPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFN 315
H ++ G R K+LV+F+ +GI S WLF + + RR+E LA+MCDERARMLQDQFN
Sbjct: 253 HS-KATGWRRKKLLVIFMSVGILGSAWLFRYMSSDIAQRREEMLATMCDERARMLQDQFN 311
Query: 316 VSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQ 375
VSMNHVHALAILVSTFHH KHPSAVDQK FGEYTE +AFERPLTSGVAYALKVLHS+R
Sbjct: 312 VSMNHVHALAILVSTFHHGKHPSAVDQKIFGEYTESSAFERPLTSGVAYALKVLHSDRMH 371
Query: 376 FEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKE 435
FEKQHGW IKKMETE++ LVQ+C PENLDPAP+QDEYAPV+F+QETVSHIVSIDMMSGKE
Sbjct: 372 FEKQHGWTIKKMETENEALVQECIPENLDPAPIQDEYAPVVFAQETVSHIVSIDMMSGKE 431
Query: 436 DRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGA 495
DRENILRARASGKGVLT PFKLLKSN+LGVVLTFAVY++ LP DATPEQRIEAT+GYLGA
Sbjct: 432 DRENILRARASGKGVLTSPFKLLKSNYLGVVLTFAVYDSKLPPDATPEQRIEATVGYLGA 491
Query: 496 SYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSR 555
SYDVPSLV+KLLHQLAS+QTI VNVYDTTNAS PI MYG DV DTGLL +S LDFGDP R
Sbjct: 492 SYDVPSLVDKLLHQLASQQTIAVNVYDTTNASDPITMYGTDVLDTGLLHISGLDFGDPLR 551
Query: 556 KHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARA 615
KHEMHCRFK PP PWTA AS+GV VIT L+G+IF+AAINRIA+VE+DY +M ELK RA
Sbjct: 552 KHEMHCRFKHTPPFPWTAFWASVGVFVITFLLGYIFYAAINRIAKVEDDYCQMRELKVRA 611
Query: 616 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIN 675
EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT+LD Q+D+AQTAH SGKDLIS+I+
Sbjct: 612 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDNQMDFAQTAHTSGKDLISVIS 671
Query: 676 DVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDP 735
+VL QAKIE+G+LE E V FH H +LD VLSLFS K+++KGIEL++Y S++VPEVVIGDP
Sbjct: 672 EVLYQAKIEAGKLELEAVAFHPHAILDEVLSLFSEKSDEKGIELSVYASNQVPEVVIGDP 731
Query: 736 GRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVY 795
RFRQIITNLVGNS+KF +KGH+FVS+HLA++V++ + + D VL + LN Q S++
Sbjct: 732 KRFRQIITNLVGNSLKFIHNKGHVFVSIHLANEVKNPLHIMDAVLRECLNLNQDMSERTC 791
Query: 796 NTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855
NTLSGFPV +RWKSWE F+ L+ + E I+LLVTVEDTG+GIP +AQ RIFTPFMQ
Sbjct: 792 NTLSGFPVGNRWKSWEKFQKLNLAHESET---IQLLVTVEDTGIGIPTDAQSRIFTPFMQ 848
Query: 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKW 915
ADSSTSRTYGGTGIGLSIS+CLV+LMGGEIGFVSEP GSTFSFT F +GE S+D KW
Sbjct: 849 ADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPEIGSTFSFTGNFRKGETESVDEKW 908
Query: 916 QQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSV 975
Q+ P SEF+GLRALVID + IRAEVTRYHLQRL M+V V +S+Q AC LSDTC++S+
Sbjct: 909 QKNNPLASEFQGLRALVIDRRKIRAEVTRYHLQRLGMSVDVNSSLQSACFSLSDTCNSSM 968
Query: 976 LPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELK 1035
L QLA++LIDKD WDKE ++ Y +K+Q + G S N PKIFLLAT +S +R ELK
Sbjct: 969 LTQLAMILIDKDSWDKESSIL--YAIKKQGQNGVKGDSLNFPKIFLLATHLSPNERKELK 1026
Query: 1036 SDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNR 1094
S GI+ +L KPL SVLI ++E + +K ++K L +LL K+ILVVDDN VNR
Sbjct: 1027 SVGIIDDVLMKPLWQSVLIRYYRESLGTGRKQIDRKKVSQLENLLIHKRILVVDDNAVNR 1086
Query: 1095 RVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENE 1154
+VAEG L+K+GA+VTCVD G+AA+ L PPHNFDACFMDLQMPEMDGF+ T +IR++ENE
Sbjct: 1087 KVAEGVLRKYGAVVTCVDGGKAALKVLKPPHNFDACFMDLQMPEMDGFEVTRRIRYMENE 1146
Query: 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYT 1214
+NE+IA GE AEMFGN+ WH+PILAMTADV QASNE+C KCGMDD+VSKPFE+EQLYT
Sbjct: 1147 VNEKIACGEELAEMFGNISYWHIPILAMTADVTQASNEECKKCGMDDFVSKPFEEEQLYT 1206
Query: 1215 AVARFF 1220
AVA F
Sbjct: 1207 AVACVF 1212
>gi|297805122|ref|XP_002870445.1| hypothetical protein ARALYDRAFT_493633 [Arabidopsis lyrata subsp.
lyrata]
gi|297316281|gb|EFH46704.1| hypothetical protein ARALYDRAFT_493633 [Arabidopsis lyrata subsp.
lyrata]
Length = 1176
Score = 1422 bits (3680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 736/1237 (59%), Positives = 917/1237 (74%), Gaps = 83/1237 (6%)
Query: 3 MAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNRRSTLAFLWLLGFVIVGSICFLLSC 62
M++TC+L +S KKA E G + + L FL L G +++ + F
Sbjct: 1 MSITCELSNLTS---------KKAKESRSGKKWLKK--PLLFLILCGSLVIVLVVF---- 45
Query: 63 DGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGSG 122
+++G ++E SC +A++ +H NV+ +++H L +LFS+SDQ+ S +C++E G
Sbjct: 46 ---SWLGRSQKEETSSCNGEAKVLYRHQNVTRSEIHDLVSLFSDSDQVLSFECSKESRPG 102
Query: 123 MLLHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSVLKNISHA 182
M + GITC++ + S+KQE + W + W L+ L ++H+
Sbjct: 103 MWENYGITCSLNM-RSEKQETR----W-----------------IPWNLN---LSGLAHS 137
Query: 183 RTWSNCTRDHFKI------------------LSFCLFKGCWWFICGMVVICIIVSLLFKS 224
+ ++C D+ + LS CL WW + V++C + +F S
Sbjct: 138 ISSTSCICDNLEASLQQPEKSENLEEELEQSLSTCLRNAWWWCLILGVLVCHKI-YVFHS 196
Query: 225 RRNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLF 284
+ K K + V Q + +++QQ+ + AGKWR IL++ +L G++ SVW F
Sbjct: 197 KAPAKRK----EKVHLQEPLAQKKQQQRAQT-SSKGAGKWRKNILLLGILGGVSFSVWWF 251
Query: 285 WLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKT 344
W E++ ++R+ETLA+MCDERAR+LQDQFNVS+NHVHAL+ILVSTFHH K PSA+DQKT
Sbjct: 252 WNTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHVHALSILVSTFHHGKTPSAIDQKT 311
Query: 345 FGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLD 404
F EYTERT FERPLTSGVAYALKV HSERE+FEK+HGW IKKMETEDQT+VQDC PEN D
Sbjct: 312 FEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHGWTIKKMETEDQTVVQDCVPENFD 371
Query: 405 PAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLG 464
PAP+Q EYAPVIF+QETVSHIVS+DMMSG+EDRENILRARASGKGVLT PFKLLKSN+LG
Sbjct: 372 PAPIQAEYAPVIFAQETVSHIVSVDMMSGEEDRENILRARASGKGVLTSPFKLLKSNNLG 431
Query: 465 VVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTT 524
VVLTFAVY+T LP DAT EQR+ AT+GYLGASYD+PSLVEKLLHQLASKQTI V+VYDTT
Sbjct: 432 VVLTFAVYDTSLPPDATEEQRVGATIGYLGASYDMPSLVEKLLHQLASKQTIAVDVYDTT 491
Query: 525 NASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVIT 584
N S I MYG ++ D +S+LDFGDPSR HEMHCRFK K P+PWTAI SI V+VIT
Sbjct: 492 NTSGLIKMYGSEIGDISEQHISSLDFGDPSRNHEMHCRFKHKLPIPWTAITTSILVLVIT 551
Query: 585 LLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGML 644
LVG+IF+ AINRIA VE D +M ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGML
Sbjct: 552 FLVGYIFNEAINRIATVEEDCQKMRELKARAEAADVAKSQFLATVSHEIRTPMNGVLGML 611
Query: 645 QMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNV 704
+MLMDT+LDA Q+DYAQTAH SGKDL SLIN+VLDQAKIESGRLE E VPF + +LDNV
Sbjct: 612 KMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQAKIESGRLELENVPFDMRFILDNV 671
Query: 705 LSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH 764
SL S KAN+KGIELA+YVS +VP+VV+GDP RFRQIITNLVGNSIKFTQ++GHIF+SVH
Sbjct: 672 SSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRFRQIITNLVGNSIKFTQERGHIFISVH 731
Query: 765 LADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQ 824
LA +VR ++++D VL++ L +S + T+SGFP V+ W SW+NFK +T
Sbjct: 732 LAAEVREPLNIEDAVLKQRLALGCSESGE---TVSGFPAVNAWGSWKNFKTCYSTENHNS 788
Query: 825 LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGE 884
+IKLLVTVEDTGVGIP++AQ RIFTPFMQADSSTSRTYGGTGIGLSIS+ LVELM GE
Sbjct: 789 -DKIKLLVTVEDTGVGIPVDAQGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGE 847
Query: 885 IGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR 944
+GFVSEPG GSTFSFTV F + + N+ K +++ + EF+GLRALVID+++IRAEVT
Sbjct: 848 MGFVSEPGIGSTFSFTVVFGKAQTNTSITKLERFDLAIQEFKGLRALVIDNRNIRAEVTS 907
Query: 945 YHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004
YHLQRL ++ + +S+++AC+ S S L LA+VLIDKD W+K+ VL + +
Sbjct: 908 YHLQRLGISADIVSSLRMACT------SVSKLENLAMVLIDKDAWNKKDFSVLDELFTRS 961
Query: 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESS 1063
+ + +R +PKI LLATS + T+R E+KS G++ ++ KPLR+SVLI C QE +
Sbjct: 962 K----VTFTR-VPKIILLATSATLTERSEMKSSGLIDEVVIKPLRMSVLICCLQETLVNG 1016
Query: 1064 KKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP 1123
KK Q RK+ +LGHLL+ KQILVVDDN+VNRRVAEGALKK+GAIVTCV+ G+AA+ L P
Sbjct: 1017 KKRQPNRKRRNLGHLLREKQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKP 1076
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
PHNFDACFMDLQMPEMDGF+AT ++R LE EIN++IASGE SAEMF WHVPILAMT
Sbjct: 1077 PHNFDACFMDLQMPEMDGFEATRRVRDLEREINKKIASGEVSAEMFCKFSSWHVPILAMT 1136
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
ADVIQA++E+CMKCGMD YVSKPFE+E LYTAVARFF
Sbjct: 1137 ADVIQATHEECMKCGMDGYVSKPFEEEVLYTAVARFF 1173
>gi|18421494|ref|NP_568532.1| histidine kinase 2 [Arabidopsis thaliana]
gi|75168995|sp|Q9C5U2.1|AHK2_ARATH RecName: Full=Histidine kinase 2; AltName: Full=Arabidopsis histidine
kinase 2; Short=AtHK2; AltName: Full=Protein AUTHENTIC
HIS-KINASE 2
gi|13537196|dbj|BAB40774.1| histidine kinase [Arabidopsis thaliana]
gi|332006631|gb|AED94014.1| histidine kinase 2 [Arabidopsis thaliana]
Length = 1176
Score = 1417 bits (3669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/1182 (60%), Positives = 893/1182 (75%), Gaps = 41/1182 (3%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
L FL L G +++ + FL +G ++E SC + ++ +H NV+ +++H L
Sbjct: 30 LFFLILCGSLVIVLVMFLR-------LGRSQKEETDSCNGEEKVLYRHQNVTRSEIHDLV 82
Query: 102 TLFSESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQ--KQSIWLAEDVKQMDQ 159
+LFS+SDQ+ S +C +E GM + GITC++ V S KQE + ++ L +
Sbjct: 83 SLFSDSDQVTSFECHKESSPGMWTNYGITCSLSV-RSDKQETRGLPWNLGLGHSISST-S 140
Query: 160 CPVEDVNVSWKLDHSVLKNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMVVICIIVS 219
C ++ +L+ + ++ + S+ + WW + V++C +
Sbjct: 141 CMCGNL-------EPILQQPENLEEENHEEGLEQGLSSY--LRNAWWCLILGVLVCHKIY 191
Query: 220 LLFKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVFVLLGIAI 279
+ R + + LQ + + +KQQQ+ R AG+WR IL++ +L G++
Sbjct: 192 VSHSKARGERKEKVHLQ------EALAPKKQQQRAQTSSRGAGRWRKNILLLGILGGVSF 245
Query: 280 SVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSA 339
SVW FW E++ ++R+ETLA+MCDERAR+LQDQFNVS+NHVHAL+ILVSTFHH K PSA
Sbjct: 246 SVWWFWDTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHVHALSILVSTFHHGKIPSA 305
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCT 399
+DQ+TF EYTERT FERPLTSGVAYALKV HSERE+FEK+HGW IKKMETEDQT+VQDC
Sbjct: 306 IDQRTFEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHGWAIKKMETEDQTVVQDCV 365
Query: 400 PENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLK 459
PEN DPAP+QDEYAPVIF+QETVSHIVS+DMMSG+EDRENILRARASGKGVLT PFKLLK
Sbjct: 366 PENFDPAPIQDEYAPVIFAQETVSHIVSVDMMSGEEDRENILRARASGKGVLTSPFKLLK 425
Query: 460 SNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVN 519
SNHLGVVLTFAVY+T LP DAT EQR+EAT+GYLGASYD+PSLVEKLLHQLASKQTI V+
Sbjct: 426 SNHLGVVLTFAVYDTSLPPDATEEQRVEATIGYLGASYDMPSLVEKLLHQLASKQTIAVD 485
Query: 520 VYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIG 579
VYDTTN S I MYG ++ D +S+LDFGDPSR HEMHCRFK K P+PWTAI SI
Sbjct: 486 VYDTTNTSGLIKMYGSEIGDISEQHISSLDFGDPSRNHEMHCRFKHKLPIPWTAITPSIL 545
Query: 580 VVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNG 639
V+VIT LVG+I + AINRIA VE D +M ELKARAEAAD+AKSQFLATVSHEIRTPMNG
Sbjct: 546 VLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAADIAKSQFLATVSHEIRTPMNG 605
Query: 640 VLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699
VLGML+MLMDT+LDA Q+DYAQTAH SGKDL SLIN+VLDQAKIESGRLE E VPF +
Sbjct: 606 VLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQAKIESGRLELENVPFDMRF 665
Query: 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHI 759
+LDNV SL S KAN+KGIELA+YVS +VP+VV+GDP RFRQIITNLVGNSIKFTQ++GHI
Sbjct: 666 ILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRFRQIITNLVGNSIKFTQERGHI 725
Query: 760 FVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNT 819
F+SVHLAD+V+ + ++D VL++ L +S + T+SGFP V+ W SW+NFK +T
Sbjct: 726 FISVHLADEVKEPLTIEDAVLKQRLALGCSESGE---TVSGFPAVNAWGSWKNFKTCYST 782
Query: 820 NTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVE 879
+ + +IKLLVTVEDTGVGIP++AQ RIFTPFMQADSSTSRTYGGTGIGLSIS+ LVE
Sbjct: 783 ES-QNSDQIKLLVTVEDTGVGIPVDAQGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVE 841
Query: 880 LMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIR 939
LM GE+GFVSEPG GSTFSFT F + E N+ K +++ + EF GLRALVID+++IR
Sbjct: 842 LMQGEMGFVSEPGIGSTFSFTGVFGKAETNTSITKLERFDLAIQEFTGLRALVIDNRNIR 901
Query: 940 AEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHY 999
AEVTRY L+RL ++ + +S+++AC TC S L LA++LIDKD W+KE VL
Sbjct: 902 AEVTRYELRRLGISADIVSSLRMAC-----TCCISKLENLAMILIDKDAWNKEEFSVLDE 956
Query: 1000 MLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQE 1058
+ + + + +R +PKIFLLATS + T+R E+KS G++ ++ KPLR+SVLI C QE
Sbjct: 957 LFTRSK----VTFTR-VPKIFLLATSATLTERSEMKSTGLIDEVVIKPLRMSVLICCLQE 1011
Query: 1059 DPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
+ KK Q R++ +LGHLL+ KQILVVDDN+VNRRVAEGALKK+GAIVTCV+ G+AA+
Sbjct: 1012 TLVNGKKRQPNRQRRNLGHLLREKQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAAL 1071
Query: 1119 DKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
L PPHNFDACFMDLQMPEMDGF+AT ++R LE EIN++IASGE SAEMF WHVP
Sbjct: 1072 AMLKPPHNFDACFMDLQMPEMDGFEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVP 1131
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
ILAMTADVIQA++E+CMKCGMD YVSKPFE+E LYTAVARFF
Sbjct: 1132 ILAMTADVIQATHEECMKCGMDGYVSKPFEEEVLYTAVARFF 1173
>gi|9758650|dbj|BAB09274.1| histidine kinase-like protein [Arabidopsis thaliana]
Length = 1173
Score = 1406 bits (3639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 716/1182 (60%), Positives = 890/1182 (75%), Gaps = 44/1182 (3%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
L FL L G +++ + FL +G ++E SC + ++ +H NV+ +++H L
Sbjct: 30 LFFLILCGSLVIVLVMFLR-------LGRSQKEETDSCNGEEKVLYRHQNVTRSEIHDLV 82
Query: 102 TLFSESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQ--KQSIWLAEDVKQMDQ 159
+LFS+SDQ+ S +C +E GM + GITC++ V S KQE + ++ L +
Sbjct: 83 SLFSDSDQVTSFECHKESSPGMWTNYGITCSLSV-RSDKQETRGLPWNLGLGHSISST-S 140
Query: 160 CPVEDVNVSWKLDHSVLKNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMVVICIIVS 219
C ++ +L+ + ++ + S+ + WW + V++C +
Sbjct: 141 CMCGNL-------EPILQQPENLEEENHEEGLEQGLSSY--LRNAWWCLILGVLVCHKIY 191
Query: 220 LLFKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVFVLLGIAI 279
+ R + + LQ + + +KQQQ+ R AG+WR IL++ +L G++
Sbjct: 192 VSHSKARGERKEKVHLQ------EALAPKKQQQRAQTSSRGAGRWRKNILLLGILGGVSF 245
Query: 280 SVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSA 339
SVW FW E++ ++R+ETLA+MCDERAR+LQDQFNVS+NHVHAL+ILVSTFHH K PSA
Sbjct: 246 SVWWFWDTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHVHALSILVSTFHHGKIPSA 305
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCT 399
+DQ+TF EYTERT FERPLTSGVAYALKV HSERE+FEK+HGW IKKMETEDQT+VQDC
Sbjct: 306 IDQRTFEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHGWAIKKMETEDQTVVQDCV 365
Query: 400 PENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLK 459
PEN DPAP+QDEYAPVIF+QETVSHIVS+DMMSG+EDRENILRARASGKGVLT PFKLLK
Sbjct: 366 PENFDPAPIQDEYAPVIFAQETVSHIVSVDMMSGEEDRENILRARASGKGVLTSPFKLLK 425
Query: 460 SNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVN 519
SNHLGVVLTFAVY+T LP DAT EQR+EAT+GYLGASYD+PSLVEKLLHQLASKQTI V+
Sbjct: 426 SNHLGVVLTFAVYDTSLPPDATEEQRVEATIGYLGASYDMPSLVEKLLHQLASKQTIAVD 485
Query: 520 VYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIG 579
VYDTTN S I MYG ++ D +S+LDFGDPSR HEMHCRFK K P+PWTAI SI
Sbjct: 486 VYDTTNTSGLIKMYGSEIGDISEQHISSLDFGDPSRNHEMHCRFKHKLPIPWTAITPSIL 545
Query: 580 VVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNG 639
V+VIT LVG+I + AINRIA VE D +M ELKARAEAAD+AKSQFLATVSHEIRTPMNG
Sbjct: 546 VLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAADIAKSQFLATVSHEIRTPMNG 605
Query: 640 VLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699
VLGML+MLMDT+LDA Q+DYAQTAH SGKDL SLIN+VLDQAKIESGRLE E VPF +
Sbjct: 606 VLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQAKIESGRLELENVPFDMRF 665
Query: 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHI 759
+LDNV SL S KAN+KGIELA+YVS +VP+VV+GDP RFRQIITNLVGNSIK ++GHI
Sbjct: 666 ILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRFRQIITNLVGNSIK---ERGHI 722
Query: 760 FVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNT 819
F+SVHLAD+V+ + ++D VL++ L +S + T+SGFP V+ W SW+NFK +T
Sbjct: 723 FISVHLADEVKEPLTIEDAVLKQRLALGCSESGE---TVSGFPAVNAWGSWKNFKTCYST 779
Query: 820 NTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVE 879
+ + +IKLLVTVEDTGVGIP++AQ RIFTPFMQADSSTSRTYGGTGIGLSIS+ LVE
Sbjct: 780 ES-QNSDQIKLLVTVEDTGVGIPVDAQGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVE 838
Query: 880 LMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIR 939
LM GE+GFVSEPG GSTFSFT F + E N+ K +++ + EF GLRALVID+++IR
Sbjct: 839 LMQGEMGFVSEPGIGSTFSFTGVFGKAETNTSITKLERFDLAIQEFTGLRALVIDNRNIR 898
Query: 940 AEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHY 999
AEVTRY L+RL ++ + +S+++AC TC S L LA++LIDKD W+KE VL
Sbjct: 899 AEVTRYELRRLGISADIVSSLRMAC-----TCCISKLENLAMILIDKDAWNKEEFSVLDE 953
Query: 1000 MLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQE 1058
+ + + + +R +PKIFLLATS + T+R E+KS G++ ++ KPLR+SVLI C QE
Sbjct: 954 LFTRSK----VTFTR-VPKIFLLATSATLTERSEMKSTGLIDEVVIKPLRMSVLICCLQE 1008
Query: 1059 DPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
+ KK Q R++ +LGHLL+ KQILVVDDN+VNRRVAEGALKK+GAIVTCV+ G+AA+
Sbjct: 1009 TLVNGKKRQPNRQRRNLGHLLREKQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAAL 1068
Query: 1119 DKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
L PPHNFDACFMDLQMPEMDGF+AT ++R LE EIN++IASGE SAEMF WHVP
Sbjct: 1069 AMLKPPHNFDACFMDLQMPEMDGFEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVP 1128
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
ILAMTADVIQA++E+CMKCGMD YVSKPFE+E LYTAVARFF
Sbjct: 1129 ILAMTADVIQATHEECMKCGMDGYVSKPFEEEVLYTAVARFF 1170
>gi|22353121|gb|AAM14700.1| cytokinin receptor [Catharanthus roseus]
Length = 1041
Score = 1401 bits (3627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 713/1037 (68%), Positives = 823/1037 (79%), Gaps = 5/1037 (0%)
Query: 189 TRDHFKILSFCLFKGCWWFICGMVVICIIVSLLFKSRRNHKHKHDQLQPVSQQRQMILQQ 248
TRD K CW G+ + C + K R K K + QP++QQ +LQ
Sbjct: 8 TRDQCDNFWLRTLKMCWCVHFGVALSCQVPKCCGKVWRYQKQKSVEEQPLNQQ-PQLLQH 66
Query: 249 KQQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERAR 308
QQQ + RS GKW +LVVFVL GI S+WLFW L E LRRKETLASMCDERAR
Sbjct: 67 FHQQQIQNTSRSTGKWWKTLLVVFVLAGIFGSMWLFWYLSEDSKLRRKETLASMCDERAR 126
Query: 309 MLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKV 368
MLQDQFNVS+NHVHALAILVSTF+H K P A+DQ+TF +YTE+TAFERPLTSGVAYAL+V
Sbjct: 127 MLQDQFNVSLNHVHALAILVSTFYHGKEPWALDQQTFEDYTEKTAFERPLTSGVAYALRV 186
Query: 369 LHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSI 428
LHSERE+FEKQ GW I+KM+TE QTL QD PE L+PAPVQ EYAPVIF+Q+TVSHIVSI
Sbjct: 187 LHSEREKFEKQQGWIIRKMDTEVQTLGQDLVPEKLEPAPVQTEYAPVIFAQKTVSHIVSI 246
Query: 429 DMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEA 488
DMMSGKEDRENILRARASGKGVLT PFKLLKSNHLGVVLTFAVYNTDLP +AT EQRI A
Sbjct: 247 DMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPEATREQRINA 306
Query: 489 TLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNL 548
T+GYLGASYDVPSLVEKLLHQLASKQTI VNVYDTT+ SAPI MYG DTGL R+S L
Sbjct: 307 TVGYLGASYDVPSLVEKLLHQLASKQTIAVNVYDTTDKSAPIKMYGDAANDTGLPRISQL 366
Query: 549 DFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEM 608
DFGDPSRKHEMHCRFKQKPP PWTAI AS+GV+VITLL+GHIFHAAINRIA+VE DY EM
Sbjct: 367 DFGDPSRKHEMHCRFKQKPPPPWTAIIASVGVLVITLLLGHIFHAAINRIAKVERDYREM 426
Query: 609 MELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGK 668
M LK RAEAAD+AKSQFLATVSHEIRTPM GVLGMLQMLM T LD QLDYA+TAH SGK
Sbjct: 427 MALKHRAEAADIAKSQFLATVSHEIRTPMVGVLGMLQMLMGTNLDVKQLDYAETAHASGK 486
Query: 669 DLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVP 728
DLISLIN+VLDQAKIESGRLE E VPF L LD V+SL S K+++K IELA+YVSD+VP
Sbjct: 487 DLISLINEVLDQAKIESGRLELEAVPFDLRADLDKVVSLLSGKSHEKDIELAVYVSDQVP 546
Query: 729 EVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788
EVVIGDPGRFRQIITNLVGNSIKFT+DKGHIFVSVHLAD+V+S +D+KD+VL++SL +Q
Sbjct: 547 EVVIGDPGRFRQIITNLVGNSIKFTKDKGHIFVSVHLADEVKSPLDIKDEVLKQSLTLIQ 606
Query: 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
+S +NTLSGFPVVDRW+SWE FK L + E+ +IKLLVTVEDTG GI +AQ R
Sbjct: 607 DRSTASFNTLSGFPVVDRWRSWEKFKNL--SGMPEESKKIKLLVTVEDTGDGIVYDAQDR 664
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
IFTPF+QADSSTSR YGGTGIGLSIS+ LV+L+GGEIGFVSEPGTGSTFSFT FT+ E
Sbjct: 665 IFTPFVQADSSTSRKYGGTGIGLSISKRLVDLVGGEIGFVSEPGTGSTFSFTAAFTKAET 724
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
+ KW+QY VSEFRGL+ALV+D+KSIRAEVTRY L+RLE++V +A++++ A S+LS
Sbjct: 725 ITGITKWEQYDLAVSEFRGLKALVVDEKSIRAEVTRYQLKRLEVSVDIASTVEAAYSHLS 784
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
++S ++++VLID+D WD EI LK+ + PKIFLLA S
Sbjct: 785 ADVNSSASERVSMVLIDEDSWDNEIMARYVGCLKKSDQTASRPSMGMNPKIFLLANPKSF 844
Query: 1029 TDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS-LGHLLKGKQILV 1086
+D ELKS G+V +LTKPLRLS+LI C QE + Q R PS +G+LLKGK++LV
Sbjct: 845 SDCIELKSTGLVDNVLTKPLRLSILISCLQESIGFGRTRQVTRSNPSTIGNLLKGKRMLV 904
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
VDDN VNR+VAE AL+K+GA+VTC G AA+ +L PPH+FDACFMDLQMPEMDGF+AT
Sbjct: 905 VDDNPVNRKVAELALRKYGAVVTCEASGEAALQRLKPPHDFDACFMDLQMPEMDGFEATQ 964
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
+IRHLE E NE + SGE + + WH PILAMTAD+IQA+NE+C KCGMD YVSKP
Sbjct: 965 KIRHLEREYNENVKSGEIGTDKSTDEAYWHTPILAMTADLIQATNEKCRKCGMDGYVSKP 1024
Query: 1207 FEDEQLYTAVARFFMSG 1223
F+DEQLY+AVA FF SG
Sbjct: 1025 FDDEQLYSAVAPFFKSG 1041
Score = 41.6 bits (96), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 79 CEKKAQIFLQHSNVSHNQLHALATLFSES---------DQIASLKCTREPGSGMLLHNGI 129
C+++A++ NVS N +HALA L S DQ T + L +G+
Sbjct: 121 CDERARMLQDQFNVSLNHVHALAILVSTFYHGKEPWALDQQTFEDYTEKTAFERPLTSGV 180
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMD 158
A++V +S++++F+KQ W+ +++MD
Sbjct: 181 AYALRVLHSEREKFEKQQGWI---IRKMD 206
>gi|255581802|ref|XP_002531702.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223528678|gb|EEF30693.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 922
Score = 1400 bits (3624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/923 (74%), Positives = 775/923 (83%), Gaps = 11/923 (1%)
Query: 303 CDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGV 362
C+E+A++L FNVS + + AL VS F S DQKTFGEYTERTAFERPLTSGV
Sbjct: 9 CEEKAQVLLQHFNVSKSQLQAL---VSLF------SESDQKTFGEYTERTAFERPLTSGV 59
Query: 363 AYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETV 422
AYALKVLHSEREQFEK+HGW I+KMETEDQTLVQDC PE LDPAP+QDEYAPVIFSQETV
Sbjct: 60 AYALKVLHSEREQFEKKHGWTIRKMETEDQTLVQDCIPEKLDPAPIQDEYAPVIFSQETV 119
Query: 423 SHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATP 482
+HIVSIDMMSGKEDRENILRARASGKGVLT PFKLLKSNHLGVVLTFAVYN DLP +ATP
Sbjct: 120 AHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPLNATP 179
Query: 483 EQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGL 542
E+RIEAT+GYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPI MYG D DTGL
Sbjct: 180 EERIEATVGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPILMYGTDYVDTGL 239
Query: 543 LRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVE 602
L +SNLDFGDP R+HEMHC FKQKP +PWTAINAS+GV+VITLLVGHIF+AAI+RIA+VE
Sbjct: 240 LHISNLDFGDPMRRHEMHCSFKQKPTLPWTAINASVGVLVITLLVGHIFYAAISRIAKVE 299
Query: 603 NDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQT 662
DY EMM LK RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT+LDA Q+D+AQT
Sbjct: 300 EDYREMMMLKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDANQMDFAQT 359
Query: 663 AHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIY 722
AH SGKDLISLIN+VLDQAKIESGRLE E V F L VLDN+LSLFS K+N+KGIELAIY
Sbjct: 360 AHASGKDLISLINEVLDQAKIESGRLELEAVSFDLRSVLDNILSLFSGKSNEKGIELAIY 419
Query: 723 VSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEK 782
VS +VPEVVIGDPGRFRQIITNLVGNS+KFT+DKGHIFVSVHLAD+VRS ++V+D VL++
Sbjct: 420 VSSQVPEVVIGDPGRFRQIITNLVGNSVKFTRDKGHIFVSVHLADEVRSTLNVRDAVLKQ 479
Query: 783 SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIP 842
LN VQ +++ NTLSG PVVDRWKSW NFK L++ +TME+ I+LLVTVEDTGVGIP
Sbjct: 480 GLNLVQDMQNEIDNTLSGCPVVDRWKSWANFKRLNSKDTMEESEMIRLLVTVEDTGVGIP 539
Query: 843 LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902
L+A RIF+PFMQADSSTSRTYGGTGIGLSIS+CLV+LMGGEIGFVSEPGTGSTFSFT +
Sbjct: 540 LDAHSRIFSPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGTGSTFSFTAS 599
Query: 903 FTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
F +G+ SLD KWQ Y P E +G RALVID +SIRAEVTRYHLQRL + +A+S++
Sbjct: 600 FRKGDLRSLDTKWQPYDPTGLELQGWRALVIDKRSIRAEVTRYHLQRLGITADMASSLKS 659
Query: 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
ACSY S TS LVLIDKD W E G +LK+ ++ GG E+ +LPKIFLL
Sbjct: 660 ACSYQSGGRHTSAPADFGLVLIDKDAWHNETGFAFRQLLKESKQNGGTEMIIDLPKIFLL 719
Query: 1023 ATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS-LGHLLK 1080
AT+I+ +R EL S G+V ++ KPLRLSVL CFQE S KK Q R+KPS L +LL+
Sbjct: 720 ATTINPEERRELLSAGLVDNIIMKPLRLSVLFSCFQEAIGSGKKSQVNRRKPSTLQNLLR 779
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
K+ILVVDDN VNRRVAEGALKK+GAIVTCV+ G+ A++ L PPH FDACFMD MPE+D
Sbjct: 780 EKRILVVDDNKVNRRVAEGALKKYGAIVTCVESGKEALELLKPPHTFDACFMDRHMPELD 839
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
GF+AT QIR E + NEQIASGE S EMFGNV WH PILAMTADVIQA+NE+C KCGMD
Sbjct: 840 GFEATRQIRARERQFNEQIASGEVSMEMFGNVAYWHTPILAMTADVIQATNEECRKCGMD 899
Query: 1201 DYVSKPFEDEQLYTAVARFFMSG 1223
D+VSKPFE+EQLY AVA FF SG
Sbjct: 900 DFVSKPFEEEQLYNAVAPFFESG 922
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 78 SCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGSGMLLHNGITCAMKVPY 137
SCE+KAQ+ LQH NVS +QL AL +LFSESDQ + T L +G+ A+KV +
Sbjct: 8 SCEEKAQVLLQHFNVSKSQLQALVSLFSESDQKTFGEYTERTAFERPLTSGVAYALKVLH 67
Query: 138 SKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSVLKNISHARTWSNCTRDHFKILS 197
S++++F+K+ W ++ DQ V+D + KLD + +++ +S T H I+S
Sbjct: 68 SEREQFEKKHGWTIRKMETEDQTLVQDC-IPEKLDPAPIQDEYAPVIFSQETVAH--IVS 124
Query: 198 FCLFKG 203
+ G
Sbjct: 125 IDMMSG 130
>gi|302121695|gb|ADK92861.1| histidine kinase 1 [Hypericum perforatum]
Length = 1199
Score = 1399 bits (3622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 743/1237 (60%), Positives = 890/1237 (71%), Gaps = 56/1237 (4%)
Query: 5 MTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFLLSCD 63
M CKL + + +++AS K++K + ++V + R F+ L V+ + LL
Sbjct: 1 MACKL-PNLNGKIAASYKMRKGKDSSHAVNQVRKCRKNALFMCALTSVVFVGVLLLLLLG 59
Query: 64 GGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTR-----E 118
+ + E +CE++AQ+ Q N S QLHALA+L SE DQ++ L+
Sbjct: 60 SRSGAYRTKAETSSTCEEEAQVLKQSLNFSGEQLHALASLCSELDQVSCLQKPELMQQDR 119
Query: 119 PGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAE-------DVKQMDQCPVEDVNVSWKL 171
P + L H G + P K KQ LAE + C +D+ L
Sbjct: 120 PAADCLEHKG-----QCPVPDKHPLLKQECLLAEKSSAVVSEATTSSSCLEQDM-----L 169
Query: 172 DHSVLKNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMVVICIIVSLLFKSRRNHKHK 231
HS L +S D +LSF K CW + G+++ C+I K K
Sbjct: 170 PHS-LNEVS--------GEDQCILLSFTFAKACWCVLVGVILSCVISGFGMKVLVKEKKM 220
Query: 232 HDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKM 291
++ + LQQ+Q Q H P+S GKWR KIL++FVLLGI S+WLFW L +
Sbjct: 221 E------AKLEALPLQQQQLLQIAHGPKSYGKWRKKILLIFVLLGIFASIWLFWHLSGSI 274
Query: 292 HLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTER 351
L+R +TLASMC ERARMLQDQFNVSMNHVHALAILVSTFHH K+PSA+DQ TFGEYTER
Sbjct: 275 ALKRVDTLASMCGERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQITFGEYTER 334
Query: 352 TAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDE 411
TAFERPLTSGVAYA+KVLHSEREQFEKQ GW IKKME+EDQTLVQDC+PENLDPAP+QDE
Sbjct: 335 TAFERPLTSGVAYAVKVLHSEREQFEKQQGWTIKKMESEDQTLVQDCSPENLDPAPLQDE 394
Query: 412 YAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAV 471
YAPVI +QETVSHIVSIDMMSGK+DRENILRARASGKGVLT PFKLLKSNHLGVVLTFAV
Sbjct: 395 YAPVILTQETVSHIVSIDMMSGKDDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAV 454
Query: 472 YNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPIN 531
YNT+LP DATPEQ+IEA +GYLGASYDVPSLVEKLL QLASKQTIVVNVYDTTNAS I
Sbjct: 455 YNTELPLDATPEQKIEACVGYLGASYDVPSLVEKLLQQLASKQTIVVNVYDTTNASNAIL 514
Query: 532 MYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIF 591
MYG DV DT L+ VSNLDFGDPSR+HEM C FKQK +PWTAINAS V +IT+LVG+IF
Sbjct: 515 MYGSDVIDTDLVHVSNLDFGDPSRRHEMRCWFKQKASLPWTAINASAAVFIITVLVGYIF 574
Query: 592 HAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
HAAI RI +VE + HEM++L RAEAADVAKS+FLATVSHEIRTPMNGVLGMLQMLMDTE
Sbjct: 575 HAAIKRIVEVEAECHEMLKLTVRAEAADVAKSKFLATVSHEIRTPMNGVLGMLQMLMDTE 634
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
LD +Q DYA+TAH SG++LISLI DVLDQAKIESGRLE E VPF LH VLD+VLS+FS +
Sbjct: 635 LDTSQEDYAKTAHASGRELISLIGDVLDQAKIESGRLELEAVPFDLHSVLDSVLSMFSGR 694
Query: 712 ANQKGIE-LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDK-GHIFVSVHLADDV 769
+++KGIE LA+Y S+ V E+VIGDP RFRQII NLVGNSIKFT+D GHIFV+VHL ++V
Sbjct: 695 SSEKGIEKLAVYASNCVSEIVIGDPERFRQIIQNLVGNSIKFTRDNGGHIFVTVHLVEEV 754
Query: 770 RSKVDVKDKVL-EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRI 828
++D KD VL S+ + S+ V TLSG+PVV+RWKSWENFK +N N+M++ +
Sbjct: 755 TGQLDTKDAVLVNGSVPVDRDPSNSVCETLSGYPVVNRWKSWENFKK-NNINSMKESDVV 813
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
++LVTVEDTGVGI +AQ RIFTPF+Q DSSTSRTYGGTGIGLSIS+CLVELM GEIGFV
Sbjct: 814 RVLVTVEDTGVGISPDAQSRIFTPFVQGDSSTSRTYGGTGIGLSISKCLVELMDGEIGFV 873
Query: 889 SEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQ 948
SE GSTFSFTV+ GE +L K P + EF+G R+L++D++ IRAEVT+YHL+
Sbjct: 874 SEANIGSTFSFTVSLKRGESRTLGTKSPLRDPSLLEFQGQRSLIVDNRRIRAEVTKYHLR 933
Query: 949 RLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008
RL + + ++ AC+Y LALVLID +VWDKE G ++ + G
Sbjct: 934 RLGVHADIVPDLKSACTYRYPA-------NLALVLIDTEVWDKEAGSAFRSVINASKPNG 986
Query: 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQ 1067
G EI PK+FLLA +R ELKS +V ++ KPLR SVL FQE S +K Q
Sbjct: 987 GAEI----PKVFLLANFTGSEERVELKSARLVDDIVIKPLRSSVLAAAFQETVGSGRKNQ 1042
Query: 1068 QKRKKPS-LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN 1126
+K PS LG+L++GKQILVVDDNMVNRRVAEGALKK+GAIVTC + G AV L PPH
Sbjct: 1043 VHKKTPSALGNLVRGKQILVVDDNMVNRRVAEGALKKYGAIVTCANNGSEAVKMLEPPHR 1102
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
FDACFMD MPEMDG +AT +IR +E +N +IASGE MFGNV WH PILAMTADV
Sbjct: 1103 FDACFMDRHMPEMDGLEATQRIRSMEELVNGRIASGEVPMVMFGNVAYWHTPILAMTADV 1162
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
IQ +NE+C++CGMDD+VSKPFE+ QLY A+ARFF SG
Sbjct: 1163 IQGANEECLRCGMDDFVSKPFEEAQLYNALARFFESG 1199
>gi|118790684|tpd|FAA00249.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 1187
Score = 1174 bits (3036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/985 (60%), Positives = 737/985 (74%), Gaps = 10/985 (1%)
Query: 240 QQRQMILQQKQQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETL 299
+Q + Q ++ QTP + + KW + L++ VL+G+ SVW+F + + RR E L
Sbjct: 200 KQANELCQHEKLLQTPSV-KISRKWSKRALLLGVLVGLCSSVWIFSSMHADVVARRIENL 258
Query: 300 ASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLT 359
+MCDERARMLQDQFNVSMNHVHALAILVSTFHH K+PSA+DQKTF ++T RT FERPL
Sbjct: 259 ENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLM 318
Query: 360 SGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQ 419
SGVAYALKVLHSERE FE++ GWKIKKMETEDQ+LV D PE L P+PVQDEYAPVIFSQ
Sbjct: 319 SGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQ 378
Query: 420 ETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQD 479
ETV HI+S+DMMSGKEDR+NILR+RA+GKG LT PF LLKSNHLGVVLTF VY DLP D
Sbjct: 379 ETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYKYDLPPD 438
Query: 480 ATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD 539
ATPE+RIEATLGYLGAS+DVPSLVE+LL QLASKQ IVV +YD TN + P MY DV
Sbjct: 439 ATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMYDSDVIA 498
Query: 540 TGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIA 599
+ L +SN+DFGDP+RKH MHCRFK P +PW+AI S V +I LLVG+I +A +N +
Sbjct: 499 SDDLHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVLLVGYIIYATLNSLE 558
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+ E++Y M +LK RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD Q D+
Sbjct: 559 EAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDF 618
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
TA SGK LI+LIN+VLD AKIESG++E E V F + D+LDNV+SLFS K+ KGIEL
Sbjct: 619 VVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIEL 678
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
A+ VSD+VP+V+IGDP RFRQIITNLVGNS+KFT+ +GHIF+ VHL ++V+ K++ D
Sbjct: 679 AVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTE-QGHIFIRVHLIEEVKRKMEALDDT 737
Query: 780 LEKSLN-SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTG 838
+++ + K+ YNTLSG V + K+ E+F+M +++ + + + LLVTVEDTG
Sbjct: 738 SPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKDSS--DAIDSVNLLVTVEDTG 795
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
+GI +AQ RIFTPFMQAD STSRTYGGTGIGLSI++ LVELMGGEIGFVS+PG STFS
Sbjct: 796 IGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSSTFS 855
Query: 899 FTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
FT F E ++ D K P +F+G+RALV+D + RAEVT YHL+RL + +A
Sbjct: 856 FTAIFKENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLGIQCDLAA 915
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
+ + A S L ++C++SV L +VL+DK+ W ++ GL L R KG L+ + +PK
Sbjct: 916 TSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLKSWQTMPK 975
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS---L 1075
FLLA SI+ D D L+ G + KPLRLS + C + L +R + + L
Sbjct: 976 FFLLAGSITPADSDCLRLAGYSNSIRKPLRLSTVAACLSK--ALGVGLTGRRSRDNSLVL 1033
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
+L GK ILVVDDN VNR VA GALKK+GAIVTCVD G+ A+ +L PPH FDACFMD+Q
Sbjct: 1034 RSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFMDVQ 1093
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MPEMDGF+AT +R +E++IN+ I +GE S+E++GN WHVPILAMTADVIQA+ E CM
Sbjct: 1094 MPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADVIQATFEGCM 1153
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARFF 1220
+CGMD YV+KPFE++QLY+AVA F
Sbjct: 1154 ECGMDGYVAKPFEEQQLYSAVAHFL 1178
>gi|162461250|ref|NP_001104867.1| histidine kinase3 [Zea mays]
gi|38347688|dbj|BAD01585.1| histidine kinase 3 [Zea mays]
Length = 1201
Score = 1166 bits (3016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 636/1199 (53%), Positives = 796/1199 (66%), Gaps = 88/1199 (7%)
Query: 68 VGNEEEEGRMSCEKKAQ----IFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGSGM 123
VG E G C + A+ + + N+S +QL AL L S + + +C G
Sbjct: 39 VGGSERSG---CGRVAEHHGVVRVGQFNLSRSQLQALVFLLSSTQK----ECMVNSG--- 88
Query: 124 LLHNG-----------ITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPV---------- 162
++H+G I C Y KQ + K +I L E D+ +
Sbjct: 89 MVHDGNQVNGAPFIPDIRCIRDRIYDGKQNWLKDAI-LQESCTAQDKYGLNSHAPAVLED 147
Query: 163 --------EDVNVSWKLDH---SVLKNISHARTWSNCTRDHFKILSFCLFKGCWWFICGM 211
ED+N + + + + IS N + + CL G
Sbjct: 148 KLLQNVIQEDINSTTQCNPHECDLCTGISGVNVVQNIGSSSNRTIILCLSA-----FLGS 202
Query: 212 VVICIIVSLLFKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVV 271
+VI I+ + + + HK D+ + Q P + + KW + L++
Sbjct: 203 IVISIVKTTHKRGIQTHKLYADE---------------KVLQAP-STKISRKWSKRALLI 246
Query: 272 FVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTF 331
VL G+ S+ +F + + RR E LA+MCDERARMLQDQFNVSMNHVHALAILVS+F
Sbjct: 247 GVLFGLCSSLCIFSCMYADVVARRIENLANMCDERARMLQDQFNVSMNHVHALAILVSSF 306
Query: 332 HHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETED 391
HH K PSA+DQKTF ++T RT FERPL SGVAYALKVLH+ER+QFE+QHGWKIKKME D
Sbjct: 307 HHGKDPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHNERQQFEEQHGWKIKKMEDGD 366
Query: 392 QTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVL 451
Q+LV D E L+P+PVQDEYAPVIFSQETV HI+S+DMMSGKED +NILR+R++GKG L
Sbjct: 367 QSLVHDYNLEKLEPSPVQDEYAPVIFSQETVKHIISVDMMSGKEDHDNILRSRSTGKGAL 426
Query: 452 TPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLA 511
T PFKLLKSNHLGVVLTF VY DLP +ATP++RI ATLGYLGAS+DVPSLV+KLL QLA
Sbjct: 427 TSPFKLLKSNHLGVVLTFTVYKYDLPPNATPQERIHATLGYLGASFDVPSLVDKLLEQLA 486
Query: 512 SKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPW 571
SK+ IVVN+YDTTN ++PI MYG D T +G L +S++DFGDP+RKHEMHCRFK +P +PW
Sbjct: 487 SKRKIVVNLYDTTNHTSPIEMYGSDFTPSGDLHISSIDFGDPTRKHEMHCRFKHEPSLPW 546
Query: 572 TAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSH 631
+AI S V +I LLVGHI +A +N + + E+DY M ELK +AEAADVAKSQFLATVSH
Sbjct: 547 SAIIISTAVAIIVLLVGHIIYATLNSLEKAEHDYRVMRELKGQAEAADVAKSQFLATVSH 606
Query: 632 EIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691
EIRTPMNGVLGMLQMLMDTELD Q D+ TA SGK LI+LIN+VLD AKIESGR+E E
Sbjct: 607 EIRTPMNGVLGMLQMLMDTELDTTQQDFVVTAQESGKVLINLINEVLDLAKIESGRIELE 666
Query: 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIK 751
VPF + D+LDNV+SLF K+ KGIELA+ VSD+VP+V+IGDP RFRQIITNLVGNS+K
Sbjct: 667 AVPFDVRDILDNVISLFYEKSQAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMK 726
Query: 752 FTQDKGHIFVSVHLADDVRSK----VDV---KDKVLEKSLNSVQHKSDKVYNTLSGFPVV 804
FT+ +GHIFV VHL ++ K DV ++L S NS+ ++NTLSG V
Sbjct: 727 FTE-QGHIFVQVHLVKELSRKGNNFCDVSAHNREILYDSDNSM------LWNTLSGLEVA 779
Query: 805 DRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTY 864
D W+S ENF M N+N + I+L V VEDTG+GI +AQ+RIFTPFMQADSSTSRTY
Sbjct: 780 DSWRSLENFTMFKNSNG--ETDTIRLAVRVEDTGIGITKDAQMRIFTPFMQADSSTSRTY 837
Query: 865 GGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE 924
GGTGIGLSI++ LVELMGGEIGF S+ G GSTFSFT F E D K P +
Sbjct: 838 GGTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAIFKENRGCPGDMKRYYSEPTPLD 897
Query: 925 FRGLRALVIDDKSIRAEVTRYHLQRL--EMAVHVANSMQLACSYLSDTCSTSVLPQLALV 982
F+G+RAL+ID +S RAEVT YHL+RL + ++ + + A S L C TS +V
Sbjct: 898 FQGMRALIIDGRSARAEVTMYHLRRLGIQCSLVATSESESASSALMKAC-TSSKNNPDMV 956
Query: 983 LIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTL 1042
L+D + W K GL ++ + KG + S+ +PK LL +SIS + D L+ G
Sbjct: 957 LVDTEAWGKGSGLAFYHRFVDCQLKGAHKFSQPMPKTILLGSSISPVESDYLRLTGFGDC 1016
Query: 1043 LTKPLRLSVLIGCFQEDPESSKKLQQKRKKP-SLGHLLKGKQILVVDDNMVNRRVAEGAL 1101
+ KPLRLS ++ C ++ QQ R + L +L GKQILVVDDN VNR+VA G+L
Sbjct: 1017 IRKPLRLSTIVACLRKTLGVGVTRQQSRDQSLVLQSVLTGKQILVVDDNAVNRKVAAGSL 1076
Query: 1102 KKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161
KK+G+ VTCVD G A+D L PPH FDACFMD+QMPEMDGF+AT IR +E +IN+ I
Sbjct: 1077 KKYGSTVTCVDSGSDAIDMLKPPHTFDACFMDVQMPEMDGFEATRLIRSIEKKINDMIMM 1136
Query: 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
GE SA +GN WHVPILAMTADVIQA+ E+CM+CGMD YVSKPFE++QLY+AVA F
Sbjct: 1137 GEISANNYGNKAHWHVPILAMTADVIQATFEKCMQCGMDGYVSKPFEEQQLYSAVAHFL 1195
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 22 KLKKASEPLQGPD-RVNRR-STLAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSC 79
KL + LQ P +++R+ S A L + F + S+C + SC V E C
Sbjct: 220 KLYADEKVLQAPSTKISRKWSKRALLIGVLFGLCSSLC-IFSCMYADVVARRIENLANMC 278
Query: 80 EKKAQIFLQHSNVSHNQLHALATLFSES---------DQIASLKCTREPGSGMLLHNGIT 130
+++A++ NVS N +HALA L S DQ T L +G+
Sbjct: 279 DERARMLQDQFNVSMNHVHALAILVSSFHHGKDPSAIDQKTFEDFTARTTFERPLMSGVA 338
Query: 131 CAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNV 167
A+KV ++++Q+F++Q W + ++ DQ V D N+
Sbjct: 339 YALKVLHNERQQFEEQHGWKIKKMEDGDQSLVHDYNL 375
>gi|110331743|dbj|BAE97709.1| cytokinin receptor histidine kinase [Oryza sativa Japonica Group]
gi|222612690|gb|EEE50822.1| hypothetical protein OsJ_31230 [Oryza sativa Japonica Group]
Length = 942
Score = 1165 bits (3014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/931 (62%), Positives = 708/931 (76%), Gaps = 9/931 (0%)
Query: 294 RRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTA 353
RR E L +MCDERARMLQDQFNVSMNHVHALAILVSTFHH K+PSA+DQKTF ++T RT
Sbjct: 8 RRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTT 67
Query: 354 FERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYA 413
FERPL SGVAYALKVLHSERE FE++ GWKIKKMETEDQ+LV D PE L P+PVQDEYA
Sbjct: 68 FERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYA 127
Query: 414 PVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYN 473
PVIFSQETV HI+S+DMMSGKEDR+NILR+RA+GKG LT PF LLKSNHLGVVLTF VY
Sbjct: 128 PVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYK 187
Query: 474 TDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMY 533
DLP DATPE+RIEATLGYLGAS+DVPSLVE+LL QLASKQ IVV +YD TN + P MY
Sbjct: 188 YDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMY 247
Query: 534 GPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHA 593
DV + L +SN+DFGDP+RKH MHCRFK P +PW+AI S V +I LLVG+I +A
Sbjct: 248 DSDVIASDDLHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVLLVGYIIYA 307
Query: 594 AINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 653
+N + + E++Y M +LK RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD
Sbjct: 308 TLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 367
Query: 654 AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKAN 713
Q D+ TA SGK LI+LIN+VLD AKIESG++E E V F + D+LDNV+SLFS K+
Sbjct: 368 TTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSW 427
Query: 714 QKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773
KGIELA+ VSD+VP+V+IGDP RFRQIITNLVGNS+KFT+ +GHIF+ VHL ++V+ K+
Sbjct: 428 AKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTE-QGHIFIRVHLIEEVKRKM 486
Query: 774 DVKDKVLEKSLN-SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
+ D +++ + K+ YNTLSG V + K+ E+F+M +++ + + + LLV
Sbjct: 487 EALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKDSS--DAIDSVNLLV 544
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
TVEDTG+GI +AQ RIFTPFMQAD STSRTYGGTGIGLSI++ LVELMGGEIGFVS+PG
Sbjct: 545 TVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPG 604
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM 952
STFSFT F E ++ D K P +F+G+RALV+D + RAEVT YHL+RL +
Sbjct: 605 VSSTFSFTAIFKENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLGI 664
Query: 953 AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
+A + + A S L ++C++SV L +VL+DK+ W ++ GL L R KG L+
Sbjct: 665 QCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLKS 724
Query: 1013 SRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK 1072
+ +PK FLLA SI+ D D L+ G + KPLRLS + C + L +R +
Sbjct: 725 WQTMPKFFLLAGSITPADSDCLRLAGYSNSIRKPLRLSTVAACLSK--ALGVGLTGRRSR 782
Query: 1073 PS---LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
+ L +L GK ILVVDDN VNR VA GALKK+GAIVTCVD G+ A+ +L PPH FDA
Sbjct: 783 DNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDA 842
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
CFMD+QMPEMDGF+AT +R +E++IN+ I +GE S+E++GN WHVPILAMTADVIQA
Sbjct: 843 CFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADVIQA 902
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ E CM+CGMD YV+KPFE++QLY+AVA F
Sbjct: 903 TFEGCMECGMDGYVAKPFEEQQLYSAVAHFL 933
Score = 40.4 bits (93), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 79 CEKKAQIFLQHSNVSHNQLHALATLFS---------ESDQIASLKCTREPGSGMLLHNGI 129
C+++A++ NVS N +HALA L S DQ T L +G+
Sbjct: 17 CDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLMSGV 76
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVN 166
A+KV +S+++ F+++ W + ++ DQ V D N
Sbjct: 77 AYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYN 113
>gi|218184380|gb|EEC66807.1| hypothetical protein OsI_33219 [Oryza sativa Indica Group]
Length = 942
Score = 1165 bits (3013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/931 (62%), Positives = 708/931 (76%), Gaps = 9/931 (0%)
Query: 294 RRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTA 353
RR E L +MCDERARMLQDQFNVSMNHVHALAILVSTFHH K+PSA+DQKTF ++T RT
Sbjct: 8 RRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTT 67
Query: 354 FERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYA 413
FERPL SGVAYALKVLHSERE FE++ GWKIKKMETEDQ+LV D PE L P+PVQDEYA
Sbjct: 68 FERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYA 127
Query: 414 PVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYN 473
PVIFSQETV HI+S+DMMSGKEDR+NILR+RA+GKG LT PF LLKSNHLGVVLTF VY
Sbjct: 128 PVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYK 187
Query: 474 TDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMY 533
DLP DATPE+RIEATLGYLGAS+DVPSLVE+LL QLASKQ IVV +YD TN + P MY
Sbjct: 188 YDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMY 247
Query: 534 GPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHA 593
DV + L +SN+DFGDP+RKH MHCRFK P +PW+AI S V +I LLVG+I +A
Sbjct: 248 DSDVIASDDLHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVLLVGYIIYA 307
Query: 594 AINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 653
+N + + E++Y M +LK RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD
Sbjct: 308 TLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 367
Query: 654 AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKAN 713
Q D+ TA SGK LI+LIN+VLD AKIESG++E E V F + D+LDNV+SLFS K+
Sbjct: 368 TTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSW 427
Query: 714 QKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773
KGIELA+ VSD+VP+V+IGDP RFRQIITNLVGNS+KFT+ +GHIF+ VHL ++V+ K+
Sbjct: 428 AKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTE-QGHIFIRVHLIEEVKRKM 486
Query: 774 DVKDKVLEKSLN-SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
+ D +++ + K+ YNTLSG V + K+ E+F+M +++ + + + LLV
Sbjct: 487 EALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKDSS--DAIDSVNLLV 544
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
TVEDTG+GI +AQ RIFTPFMQAD STSRTYGGTGIGLSI++ LVELMGGEIGFVS+PG
Sbjct: 545 TVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPG 604
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM 952
STFSFT F E ++ D K P +F+G+RALV+D + RAEVT YHL+RL +
Sbjct: 605 VSSTFSFTAIFKENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCTRAEVTMYHLRRLGI 664
Query: 953 AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
+A + + A S L ++C++SV L +VL+DK+ W ++ GL L R KG L+
Sbjct: 665 QCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLKS 724
Query: 1013 SRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK 1072
+ +PK FLLA SI+ D D L+ G + KPLRLS + C + L +R +
Sbjct: 725 WQTMPKFFLLAGSITPADSDCLRLAGYSNSIRKPLRLSTVAACLSK--ALGVGLTGRRSR 782
Query: 1073 PS---LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
+ L +L GK ILVVDDN VNR VA GALKK+GAIVTCVD G+ A+ +L PPH FDA
Sbjct: 783 DNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDA 842
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
CFMD+QMPEMDGF+AT +R +E++IN+ I +GE S+E++GN WHVPILAMTADVIQA
Sbjct: 843 CFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADVIQA 902
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ E CM+CGMD YV+KPFE++QLY+AVA F
Sbjct: 903 TFEGCMECGMDGYVAKPFEEQQLYSAVAHFL 933
Score = 40.4 bits (93), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 79 CEKKAQIFLQHSNVSHNQLHALATLFS---------ESDQIASLKCTREPGSGMLLHNGI 129
C+++A++ NVS N +HALA L S DQ T L +G+
Sbjct: 17 CDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLMSGV 76
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVN 166
A+KV +S+++ F+++ W + ++ DQ V D N
Sbjct: 77 AYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYN 113
>gi|413934338|gb|AFW68889.1| putative histidine kinase family protein [Zea mays]
Length = 1201
Score = 1161 bits (3003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 635/1199 (52%), Positives = 794/1199 (66%), Gaps = 88/1199 (7%)
Query: 68 VGNEEEEGRMSCEKKAQ----IFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGSGM 123
VG E G C + A+ + + N+S +QL AL L S + + +C G
Sbjct: 39 VGGSERSG---CGRVAEHHGVVRVGQFNLSRSQLQALVFLLSSTHK----ECMVNSG--- 88
Query: 124 LLHNG-----------ITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPV---------- 162
++H+G I C Y KQ + K +I L E D+ +
Sbjct: 89 MVHDGNQVNGASFIPDIRCIRDRIYDGKQNWLKDAI-LQESCTAQDKYGLNSHAPAVLED 147
Query: 163 --------EDVNVSWKLDHS---VLKNISHARTWSNCTRDHFKILSFCLFKGCWWFICGM 211
ED+N + + + + IS N + + CL G
Sbjct: 148 KLLQNVIQEDINSTTQCNPDECDLCAGISGVNVVQNIGSSSNRTIILCLSA-----FLGS 202
Query: 212 VVICIIVSLLFKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVV 271
+VI I+ + + + HK D+ + Q P + + KW + L++
Sbjct: 203 IVISIVKTTHKRGIQTHKLYADE---------------KVLQAP-STKISRKWSKRALLI 246
Query: 272 FVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTF 331
VL G+ SV +F + + RR E LA+MCDERARMLQDQFNVSMNHVHALAILVS+F
Sbjct: 247 GVLFGLCSSVCIFSCMYADVVARRIENLANMCDERARMLQDQFNVSMNHVHALAILVSSF 306
Query: 332 HHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETED 391
HH K PSA+DQKTF ++T RT FERPL SGVAYALKVLH+ER+QFE+QHGWKIKKME D
Sbjct: 307 HHGKDPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHNERQQFEEQHGWKIKKMEDGD 366
Query: 392 QTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVL 451
Q+LV D E L+P+PVQDEYAPVIFSQETV HI+S+DMMSGKED +NILR+ ++GKG L
Sbjct: 367 QSLVHDYNLEKLEPSPVQDEYAPVIFSQETVKHIISVDMMSGKEDHDNILRSWSTGKGAL 426
Query: 452 TPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLA 511
T PFKLLKSNHLGVVLTF VY DLP +ATP++RI ATLGYLGAS+DVPSLV+KLL QLA
Sbjct: 427 TSPFKLLKSNHLGVVLTFTVYKYDLPPNATPQERIHATLGYLGASFDVPSLVDKLLEQLA 486
Query: 512 SKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPW 571
SK+ IVVN+YDTTN ++PI MYG D T +G L +S++DFGDP+RKHEMHCRFK +P +PW
Sbjct: 487 SKRKIVVNLYDTTNHTSPIEMYGSDFTPSGDLHISSIDFGDPTRKHEMHCRFKHEPSLPW 546
Query: 572 TAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSH 631
+AI S V +I LLVGHI +A +N + + E+DY M ELK +AEAAD+AKSQFLATVSH
Sbjct: 547 SAIIISTAVAIIVLLVGHIIYATLNSLEKAEHDYRVMRELKGQAEAADIAKSQFLATVSH 606
Query: 632 EIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691
EIRTPMNGVLGMLQMLMDTELD Q D+ TA SGK LI+LIN+VLD AKIESGR+E E
Sbjct: 607 EIRTPMNGVLGMLQMLMDTELDTTQQDFVVTAQESGKVLINLINEVLDLAKIESGRIELE 666
Query: 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIK 751
VPF + D+LDNV+SLF K+ KGIELA+ VSD+VP+V+IGDP RFRQIITNLVGNS+K
Sbjct: 667 AVPFDVRDILDNVISLFYDKSQAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMK 726
Query: 752 FTQDKGHIFVSVHLADDVRSK----VDV---KDKVLEKSLNSVQHKSDKVYNTLSGFPVV 804
FT+ +GHIFV VHL ++ K DV ++L S NS+ ++NTLSG V
Sbjct: 727 FTE-QGHIFVQVHLVKELNRKGNNFCDVSAHNREILYDSDNSM------LWNTLSGLEVA 779
Query: 805 DRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTY 864
D W+S ENF M N+N + I+L V VEDTG+GI +AQ+RIFTPFMQADSSTSRTY
Sbjct: 780 DSWRSLENFTMFKNSNG--ETDTIRLAVRVEDTGIGITKDAQMRIFTPFMQADSSTSRTY 837
Query: 865 GGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE 924
GGTGIGLSI++ LVELMGGEIGF S+ G GSTFSFT F E D K P +
Sbjct: 838 GGTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAIFKENRGCPGDMKRYYSEPTPLD 897
Query: 925 FRGLRALVIDDKSIRAEVTRYHLQRL--EMAVHVANSMQLACSYLSDTCSTSVLPQLALV 982
F+G+RAL+ID +S RAEVT YHL+RL + ++ + + A S L C TS +V
Sbjct: 898 FQGMRALIIDGRSARAEVTMYHLRRLGIQCSLVATSESESASSALMKAC-TSSKNNPDMV 956
Query: 983 LIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTL 1042
L+D + W K GL ++ + KG + S+ +PK LL +SIS + D L+ G
Sbjct: 957 LVDTEAWGKGSGLAFYHRFVDCQLKGAHKFSQPMPKTILLGSSISPVESDYLRLTGFGDC 1016
Query: 1043 LTKPLRLSVLIGCFQEDPESSKKLQQKRKKP-SLGHLLKGKQILVVDDNMVNRRVAEGAL 1101
+ KPLRLS ++ C ++ QQ R + L +L GKQILVVDDN VNR+VA G+L
Sbjct: 1017 IRKPLRLSTIVACLRKTLGVGVTRQQSRDQSLVLQSVLTGKQILVVDDNAVNRKVAAGSL 1076
Query: 1102 KKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161
KK+G+ VTCVD G A+D L PPH FDACFMD+QMPEMDGF+AT IR +E +IN+ I
Sbjct: 1077 KKYGSKVTCVDSGSDAIDMLKPPHTFDACFMDVQMPEMDGFEATRLIRSIEKKINDMIMM 1136
Query: 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
GE SA +GN WHVPILAMTADVIQA+ E+CM+CGMD YVSKPFE++QLY AVA F
Sbjct: 1137 GEISANNYGNKAHWHVPILAMTADVIQATFEKCMQCGMDGYVSKPFEEQQLYFAVAHFL 1195
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 22 KLKKASEPLQGPD-RVNRR-STLAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSC 79
KL + LQ P +++R+ S A L + F + S+C + SC V E C
Sbjct: 220 KLYADEKVLQAPSTKISRKWSKRALLIGVLFGLCSSVC-IFSCMYADVVARRIENLANMC 278
Query: 80 EKKAQIFLQHSNVSHNQLHALATLFSES---------DQIASLKCTREPGSGMLLHNGIT 130
+++A++ NVS N +HALA L S DQ T L +G+
Sbjct: 279 DERARMLQDQFNVSMNHVHALAILVSSFHHGKDPSAIDQKTFEDFTARTTFERPLMSGVA 338
Query: 131 CAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNV 167
A+KV ++++Q+F++Q W + ++ DQ V D N+
Sbjct: 339 YALKVLHNERQQFEEQHGWKIKKMEDGDQSLVHDYNL 375
>gi|255547688|ref|XP_002514901.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223545952|gb|EEF47455.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 1005
Score = 1145 bits (2963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/968 (59%), Positives = 712/968 (73%), Gaps = 37/968 (3%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W K+L+ +V+ I +S+W+FW + + +RKE LASMCDERARMLQDQFNVSMNHV A
Sbjct: 56 WWRKLLMAWVIGWIMVSLWIFWYMSSQATEKRKEALASMCDERARMLQDQFNVSMNHVQA 115
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
++IL+STFHH K+PSA+DQ+TF YTERTAFERPLTSGVAYA++VLHSEREQFE+Q GW
Sbjct: 116 MSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFERQQGWT 175
Query: 384 IKKMETEDQTLVQ--DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENIL 441
IKKM+T +Q V D PE L+P+P+Q+EYAPVIF+Q+T+SH+VSIDM+SGKEDREN+L
Sbjct: 176 IKKMDTLEQNPVHKDDYIPELLEPSPIQEEYAPVIFAQDTISHVVSIDMLSGKEDRENVL 235
Query: 442 RARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPS 501
RAR SG GVLT PF+LLK+N LGV+LTFAVY DLP +ATP +RI+AT GYLG +D+ S
Sbjct: 236 RARESGTGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIES 295
Query: 502 LVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHC 561
LVEKLL QLASKQTI+V+VYDTTN S PI+MYG +V+D GL VS L+FGDP RKHEMHC
Sbjct: 296 LVEKLLQQLASKQTILVDVYDTTNESHPISMYGSNVSDNGLQHVSALNFGDPHRKHEMHC 355
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
RFKQK P PW AI SIGV+VI LL+GHIFHA +NRIA+VE+DYHEMMELK RAEAAD+A
Sbjct: 356 RFKQKAPWPWLAITTSIGVLVIVLLIGHIFHATVNRIAKVEDDYHEMMELKKRAEAADIA 415
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNGVLGML MLMDT LD Q DY +TA SGK L+SLIN+VLDQA
Sbjct: 416 KSQFLATVSHEIRTPMNGVLGMLHMLMDTNLDVTQQDYVRTAQASGKALVSLINEVLDQA 475
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIESG+LE E V F+L +LD+VL LFS KA KG+ELA+Y+SD VPE++IGDPGRFRQI
Sbjct: 476 KIESGKLELENVQFNLRAILDDVLPLFSEKAQVKGVELAVYISDSVPELLIGDPGRFRQI 535
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
I NL+GNSIKFT +GH+FV+VHL ++V +DV+ + NT+SGF
Sbjct: 536 IINLMGNSIKFTH-QGHVFVTVHLVEEVIDSIDVETGSSSR-------------NTVSGF 581
Query: 802 PVVDRWKSWENFKMLDNTNTMEQL----GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
PV DR +SW F+ + L I L+V+VEDTG GIPLEAQ RIF PFMQ
Sbjct: 582 PVADRRRSWAGFRTFSQEGSNRALLPSSDHINLIVSVEDTGEGIPLEAQPRIFIPFMQVG 641
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQ 917
STSR YGGTGIGLSIS+CLV LM GEIGFVS P G+TF+FT F G N+ + Q+
Sbjct: 642 PSTSRKYGGTGIGLSISKCLVGLMNGEIGFVSIPRIGTTFTFTAVFANGCSNTNECNSQK 701
Query: 918 YVPD----VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
SEFRG+ AL++D + +RA+V+RYH+QRL M V V + + A LS S
Sbjct: 702 ISSQSNTITSEFRGMTALIVDSRPVRAKVSRYHVQRLGMHVEVVSDLNQA---LSSINSG 758
Query: 974 SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
++L + +VLI+++VWDK+ + ++ ++ G+ PK+FLLA SI+ + +
Sbjct: 759 NIL--INVVLIEQEVWDKDSSISALFVNNTRKIDHGVS-----PKLFLLANSINSSRANA 811
Query: 1034 LKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMV 1092
+ S +++ KPLR S+L Q K + L +LL G++IL+VDDN V
Sbjct: 812 VASAVYTPSVIMKPLRASMLAASLQRAMGVGNKGNAHNGE--LSNLLLGRKILIVDDNSV 869
Query: 1093 NRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLE 1152
N +VA GALKK+GA V C++ G A+ LTPPH FDACFMD+QMPEMDGF+AT +IR E
Sbjct: 870 NLKVAAGALKKYGADVVCIESGEKAIKLLTPPHQFDACFMDIQMPEMDGFEATRRIRDRE 929
Query: 1153 NEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
+ I SG+ + + N+ WHVPILAMTADVIQA++E+C KCGMD YVSKPFE EQL
Sbjct: 930 HNFKNSIQSGDKTVGGYENLPNWHVPILAMTADVIQATHEECSKCGMDGYVSKPFEAEQL 989
Query: 1213 YTAVARFF 1220
Y V+ FF
Sbjct: 990 YREVSSFF 997
Score = 44.7 bits (104), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
L W++G+++V S+ A +E M C+++A++ NVS N + A++
Sbjct: 60 LLMAWVIGWIMV-SLWIFWYMSSQATEKRKEALASM-CDERARMLQDQFNVSMNHVQAMS 117
Query: 102 TLF---------SESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAE 152
L S DQ + T L +G+ A++V +S++++F++Q W +
Sbjct: 118 ILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFERQQGWTIK 177
Query: 153 DVKQMDQCPV 162
+ ++Q PV
Sbjct: 178 KMDTLEQNPV 187
>gi|225425392|ref|XP_002276961.1| PREDICTED: histidine kinase 3 [Vitis vinifera]
gi|297738469|emb|CBI27670.3| unnamed protein product [Vitis vinifera]
Length = 1039
Score = 1139 bits (2947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/979 (59%), Positives = 721/979 (73%), Gaps = 42/979 (4%)
Query: 259 RSAGK-WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVS 317
+ GK W K+L +VL+ I +S+W+F L + +RKETL SMCDERARMLQDQFNVS
Sbjct: 78 KKVGKTWWRKLLFTWVLMWIMVSLWIFSYLSLQASEKRKETLGSMCDERARMLQDQFNVS 137
Query: 318 MNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFE 377
MNHV A++IL+STFHH K+PSA+DQ TF YTERTAFERPLTSGVAYA++VLHSEREQFE
Sbjct: 138 MNHVQAMSILISTFHHGKNPSAIDQGTFARYTERTAFERPLTSGVAYAVRVLHSEREQFE 197
Query: 378 KQHGWKIKKMETEDQTLVQ--DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKE 435
KQ GW IK+M+T +QT V + ENL+P+PVQ+EYAPVIF+Q+TVSH++S+DM+SGKE
Sbjct: 198 KQQGWTIKRMDTPEQTPVHEDNHASENLEPSPVQEEYAPVIFAQDTVSHVISLDMLSGKE 257
Query: 436 DRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGA 495
DREN+LRARASGK VLT PF+L K+N LGV+LTFAVY +DL +ATP +RI+AT GYLG
Sbjct: 258 DRENVLRARASGKAVLTAPFRLFKTNSLGVILTFAVYKSDLLSNATPNERIQATHGYLGG 317
Query: 496 SYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSR 555
+ + SLVEKLL QLASKQTI+VNVYDTT+ PI+MYG +V+D GL VS L+FGDP R
Sbjct: 318 VFHIESLVEKLLQQLASKQTILVNVYDTTDTDHPISMYGSNVSDDGLQHVSALNFGDPFR 377
Query: 556 KHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARA 615
KHEM CRFKQK P PW AI S G++VI LLVGHIFHA +NRIA+VE DY +MM LK RA
Sbjct: 378 KHEMRCRFKQKAPWPWLAITTSTGILVIALLVGHIFHATVNRIAKVEEDYRDMMMLKKRA 437
Query: 616 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIN 675
EAADVAKSQFLATVSHEIRTPMNGVLGML ML+DT+LD Q DY +TA SGK L+SLIN
Sbjct: 438 EAADVAKSQFLATVSHEIRTPMNGVLGMLHMLIDTDLDVTQQDYVRTAQASGKALVSLIN 497
Query: 676 DVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDP 735
+VLDQAKIESG+LE E + F L +LD+VLSLFS K+ +KG+ELA+Y+SDRVP+++IGDP
Sbjct: 498 EVLDQAKIESGKLELEELQFDLQAILDDVLSLFSGKSQEKGVELAVYISDRVPKMLIGDP 557
Query: 736 GRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVY 795
GRFRQIITNL+GNSIKFT+ KGHIFV++HL +++ ++V+ + K
Sbjct: 558 GRFRQIITNLMGNSIKFTE-KGHIFVTIHLVEELMDSIEVETESSSK------------- 603
Query: 796 NTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR-----IKLLVTVEDTGVGIPLEAQVRIF 850
NTLSG PV DR SWE F+ + I L+V+VEDTGVGIP EAQ R+F
Sbjct: 604 NTLSGLPVADRRCSWEGFRTFNQEGLTSPFSSSSSDLIHLIVSVEDTGVGIPEEAQSRVF 663
Query: 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNS 910
TPFMQ S SR +GGTGIGLSIS+CLV LM GEIGFVS P GSTF+FT F+ G S
Sbjct: 664 TPFMQVGPSISRIHGGTGIGLSISKCLVGLMNGEIGFVSRPNVGSTFTFTAVFSGGCSKS 723
Query: 911 LDPKWQ----QYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+ K Q Q SEF+G+ ALV+D +RA+V+RYH+QRL + V V + + S
Sbjct: 724 NEYKCQPTNNQSNAVSSEFQGMAALVVDPNPVRAKVSRYHIQRLGIRVEVTSDLNQVFSS 783
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
+S + + +VL+++DVWDK+ L + + +K LE+ PK+FLLA SI
Sbjct: 784 ISSGNTA-----INMVLVEQDVWDKDSN--LSALFGNKLKKLDLEVP---PKLFLLANSI 833
Query: 1027 SETDRDELKSDGIV--TLLTKPLRLSVLIGCFQED-PESSKKLQQKRKKPSLG--HLLKG 1081
S T R+ G+ T++ KPLR S+L Q +K + Q + PSL +LL+G
Sbjct: 834 SST-RNSAAISGVYNPTVIMKPLRASMLAASLQRALGVGNKGVCQNGEHPSLSLRNLLRG 892
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++ILVVDDN VN RVA GALKK+GA V C D G++A+ L PPH+FDACFMD+QMPEMDG
Sbjct: 893 RKILVVDDNNVNLRVAAGALKKYGADVVCADSGKSAIPLLKPPHDFDACFMDIQMPEMDG 952
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
F+AT IR +E +N +I GE S E + N+ WH+PILAMTADVIQA++E+C++CGMD
Sbjct: 953 FEATGIIREMERNVNSRIQHGEVSVEAYANISNWHLPILAMTADVIQATHEECLRCGMDG 1012
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YVSKPFE EQLY V+RFF
Sbjct: 1013 YVSKPFEAEQLYREVSRFF 1031
Score = 45.4 bits (106), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 42 LAFLWLLGFVIVGSICF-LLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHAL 100
L F W+L +++V F LS A +E G M C+++A++ NVS N + A+
Sbjct: 88 LLFTWVLMWIMVSLWIFSYLSLQ--ASEKRKETLGSM-CDERARMLQDQFNVSMNHVQAM 144
Query: 101 ATLFSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLA 151
+ L S DQ + T L +G+ A++V +S++++F+KQ W
Sbjct: 145 SILISTFHHGKNPSAIDQGTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTI 204
Query: 152 EDVKQMDQCPV-EDVNVSWKLDHS 174
+ + +Q PV ED + S L+ S
Sbjct: 205 KRMDTPEQTPVHEDNHASENLEPS 228
>gi|190148357|gb|ACE63261.1| histidine kinase 3 [Betula pendula]
Length = 1053
Score = 1131 bits (2926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/981 (58%), Positives = 716/981 (72%), Gaps = 41/981 (4%)
Query: 259 RSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSM 318
R +W K+L+ +V +S+W+FW L + +RKE+LASMCDERARMLQDQFNVSM
Sbjct: 79 RVPKEWWRKLLITWVFGWTIVSLWIFWYLSSQATEKRKESLASMCDERARMLQDQFNVSM 138
Query: 319 NHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEK 378
NH+ A++I++S FHH K+PSA+DQ+TF YTERTAFERPLTSGVAYA++VLHSEREQFEK
Sbjct: 139 NHIQAMSIMISIFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEK 198
Query: 379 QHGWKIKKMETEDQTLVQ--DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKED 436
Q GW IK+M+T +Q V D PE L+P+P+Q+EYAPVIF+Q+T+SH+VS+DM+SGKED
Sbjct: 199 QQGWTIKRMDTLEQNPVHEDDYAPEALEPSPIQEEYAPVIFAQDTISHVVSLDMLSGKED 258
Query: 437 RENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGAS 496
REN+L AR SGKGVLT PFKLLK+N LGV+LTFAVY TDLP +ATP +RI+AT GYLG
Sbjct: 259 RENVLLARESGKGVLTAPFKLLKTNRLGVILTFAVYKTDLPSNATPNERIQATDGYLGGV 318
Query: 497 YDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRK 556
+D+ SLVEKLL QLASKQTI+VNVYDTTN S PI+MYG +V+D GL S L+FGDP RK
Sbjct: 319 FDIESLVEKLLQQLASKQTILVNVYDTTNHSHPISMYGSNVSDDGLQHGSALNFGDPFRK 378
Query: 557 HEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAE 616
HEMHCRFKQKPP PW AI SIG++VI LLVG+IFHA +NRIA+VE+D +M ELK +AE
Sbjct: 379 HEMHCRFKQKPPWPWLAITTSIGILVIALLVGYIFHATVNRIAKVEDDCQKMTELKKQAE 438
Query: 617 AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIND 676
AADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD Q DY +TA +SGK L+SLIN+
Sbjct: 439 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTDLDVTQQDYVRTAQDSGKALVSLINE 498
Query: 677 VLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPG 736
VLDQAKIESGRLE E V F L +LD+VLSLFS K+ G+ELA+Y+SD+VPE++IGD G
Sbjct: 499 VLDQAKIESGRLELEAVQFDLRAILDDVLSLFSGKSPGNGVELAVYISDQVPEMLIGDAG 558
Query: 737 RFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYN 796
RFRQIITNL+GNSIKFT+ KGHIFV+VHL ++V ++V+ E S N N
Sbjct: 559 RFRQIITNLMGNSIKFTE-KGHIFVTVHLVEEVIGSIEVET---ESSSN----------N 604
Query: 797 TLSGFPVVDRWKSWENFKMLDNTNTMEQLGR-----IKLLVTVEDTGVGIPLEAQVRIFT 851
TLSGFPV DR SW+ F+ + L I L+V+VEDTGVGIP EAQ R+FT
Sbjct: 605 TLSGFPVADRKSSWDGFRTFSQEGSTCPLSSSSSDLINLIVSVEDTGVGIPREAQSRVFT 664
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG----- 906
PFMQ S SRT+GGTGIGLSIS+CLV LM GEIGFVS P TGSTF+FT FT
Sbjct: 665 PFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSIPNTGSTFTFTAVFTNASSHPN 724
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
E SL Q SEF+G+ ALV+D + +RA+V+RYH+QRL + V + + +
Sbjct: 725 EYKSLQIN-NQSKSTSSEFQGMTALVVDPRPVRAKVSRYHIQRLGIRVELVPDLNQGFAN 783
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
+S + + +VL++++VWD++ G+ + ++ K ++ SR PK+FLLA I
Sbjct: 784 ISSGNTA-----IDMVLVEQEVWDRDSGIAVLFINKFKK-----SYSRIPPKLFLLANPI 833
Query: 1027 -SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK---PSLGHLLKGK 1082
S R D ++ KPLR S+L Q K + + SL +LL G+
Sbjct: 834 GSSKTRAATSDDYTPPVIMKPLRASMLSASLQRAMGVGNKGNPRNGELPGSSLRNLLLGR 893
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+IL+VDDN VN RVA GALKK+GA V C + G+ A+ L PPH+FDACFMD+QMPE+DGF
Sbjct: 894 KILIVDDNNVNLRVAAGALKKYGADVVCAESGKKAISLLKPPHHFDACFMDIQMPEIDGF 953
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+AT +IR +E+ IN I GE S E + WHVPILAMTADVIQA++E+ +KCGMD Y
Sbjct: 954 EATRRIRDMEHNINNSIQRGEVSVEGPQTISNWHVPILAMTADVIQATHEESIKCGMDGY 1013
Query: 1203 VSKPFEDEQLYTAVARFFMSG 1223
VSKPFE +QLY V+RFF S
Sbjct: 1014 VSKPFEAQQLYREVSRFFQSA 1034
Score = 45.1 bits (105), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
L W+ G+ IV S+ A +E M C+++A++ NVS N + A++
Sbjct: 88 LLITWVFGWTIV-SLWIFWYLSSQATEKRKESLASM-CDERARMLQDQFNVSMNHIQAMS 145
Query: 102 TLFS---------ESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAE 152
+ S DQ + T L +G+ A++V +S++++F+KQ W +
Sbjct: 146 IMISIFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIK 205
Query: 153 DVKQMDQCPVED 164
+ ++Q PV +
Sbjct: 206 RMDTLEQNPVHE 217
>gi|356525172|ref|XP_003531201.1| PREDICTED: histidine kinase 3-like [Glycine max]
Length = 1030
Score = 1125 bits (2911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/1051 (55%), Positives = 736/1051 (70%), Gaps = 53/1051 (5%)
Query: 193 FKILSFCLFKGCW--------WFICGMVVICIIVSLLFKSRRNHKHKHDQLQPVSQQRQM 244
K+ L CW WF+ +++ + HK + +S Q
Sbjct: 11 LKVGHLLLVLCCWVVSVVYLNWFLSSGIIMDTKMGGGGGGGSKMWHK-KWWEKISGQGCK 69
Query: 245 ILQQKQQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCD 304
I QQ Q + A WR K+L+ +V+ +S+ +F + + +RKETLASMCD
Sbjct: 70 IHQQYYQYIGSKKVKRA-LWR-KLLLTWVVGWFIVSLRIFCYMSSQGTEKRKETLASMCD 127
Query: 305 ERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAY 364
ERARMLQDQFNVSMNH+ A++IL+STFHH K PSA+DQKTF +YTERTAFERPLTSGVAY
Sbjct: 128 ERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQKTFAKYTERTAFERPLTSGVAY 187
Query: 365 ALKVLHSEREQFEKQHGWKIKKMETEDQTLVQ--DCTPENLDPAPVQDEYAPVIFSQETV 422
A++VLHSEREQFEKQ GW IK+M+T +Q V D PE L+P+PVQ+EYAPVIF+Q+T+
Sbjct: 188 AVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDTI 247
Query: 423 SHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATP 482
+H++S++++SGKEDREN+LRAR SGKGVLT PF+LLK+N LGV+LTFAVY DLP + TP
Sbjct: 248 AHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNTTP 307
Query: 483 EQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGL 542
+RI+AT GYLG +DV SLVEKLL QLASKQT++V+VYDTTN + PI MYG + +
Sbjct: 308 NERIQATDGYLGGVFDVESLVEKLLQQLASKQTVIVHVYDTTNRTHPIAMYGSNESGDFF 367
Query: 543 LRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVE 602
VS L+FGDP RKHEMHCRFKQKPP PW AI SIG++VI LLVG+IFHA +NRIA+VE
Sbjct: 368 YHVSTLNFGDPFRKHEMHCRFKQKPPWPWVAITTSIGILVIALLVGYIFHATVNRIAKVE 427
Query: 603 NDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQT 662
+DY EMMELK RAEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD Q +Y +T
Sbjct: 428 DDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRT 487
Query: 663 AHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIY 722
A SGK L+SLIN+VLDQAKIE G+LE E V F + +LD+VLSLFS K+ K +ELA+Y
Sbjct: 488 AQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKRVELAVY 547
Query: 723 VSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEK 782
VSD VPE++IGDPGRFRQIITNL+GNSIKFT DKGHIFV++HL ++V ++V +K
Sbjct: 548 VSDHVPELLIGDPGRFRQIITNLMGNSIKFT-DKGHIFVTIHLVEEVVRSIEV-----DK 601
Query: 783 SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR-----IKLLVTVEDT 837
NS NTLSG PV D +SWE FK + + L+V+VEDT
Sbjct: 602 ESNS--------ENTLSGSPVADSRRSWEGFKAFSQEGPLGSFSSPSNDLVNLIVSVEDT 653
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G GIPLE+Q IFTPFMQ SS SR +GGTGIGLSIS+CLV LM GEIGFVS P GSTF
Sbjct: 654 GEGIPLESQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKIGSTF 713
Query: 898 SFTVTFTEGERNSLDPKWQQY----VPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
+FT FT G R+S + K QQ SEF G+ AL+ID +S+RAEV+ YH+QRL +
Sbjct: 714 TFTAVFTNGHRSSSECKIQQINNQPQSASSEFEGMTALIIDPRSVRAEVSGYHIQRLGIH 773
Query: 954 VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
V + + ++ S +S+ + +VLI+++VWD+++GL H++ +R G+
Sbjct: 774 VEMVSDLKQGLSTISNGNVV-----VNMVLIEQEVWDRDLGLSSHFVNNTRRIDHGVP-- 826
Query: 1014 RNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP 1073
PK+F+L S S T++TKPLR S+L Q K R+
Sbjct: 827 ---PKLFILVNSSSSFKASVNLGVHNPTVITKPLRASMLAASLQRAMGVQNKGAPHRELQ 883
Query: 1074 SLG--HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
SL HLL+G++IL+VDDN VNR VA GALKK+GA V CV G+ A+ L PPH FDACF
Sbjct: 884 SLSLRHLLRGRKILIVDDNGVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACF 943
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMPEMDGF+AT +IR +E+ +N ++ S + F N+ WHVPILAMTADVIQA++
Sbjct: 944 MDIQMPEMDGFEATKRIREMEDSVNREV-----SMDDFENITNWHVPILAMTADVIQATH 998
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
E+C++CGMD YVSKPFE EQLY V+RFF S
Sbjct: 999 EECLRCGMDGYVSKPFEAEQLYREVSRFFQS 1029
Score = 47.4 bits (111), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 32 GPDRVNRR--STLAFLWLLGFVIVG--SICFLLSCDGGAFVGNEEEEGRMS--CEKKAQI 85
G +V R L W++G+ IV C++ S G E+ + ++ C+++A++
Sbjct: 79 GSKKVKRALWRKLLLTWVVGWFIVSLRIFCYMSSQ------GTEKRKETLASMCDERARM 132
Query: 86 FLQHSNVSHNQLHALATLFSES---------DQIASLKCTREPGSGMLLHNGITCAMKVP 136
NVS N + A++ L S DQ K T L +G+ A++V
Sbjct: 133 LQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQKTFAKYTERTAFERPLTSGVAYAVRVL 192
Query: 137 YSKKQEFQKQSIWLAEDVKQMDQCPV 162
+S++++F+KQ W + + ++Q PV
Sbjct: 193 HSEREQFEKQQGWTIKRMDTLEQNPV 218
>gi|356512385|ref|XP_003524900.1| PREDICTED: histidine kinase 3-like [Glycine max]
Length = 1030
Score = 1120 bits (2896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/1051 (55%), Positives = 735/1051 (69%), Gaps = 53/1051 (5%)
Query: 193 FKILSFCLFKGCW--------WFICGMVVICIIVSLLFKSRRNHKHKHDQLQPVSQQRQM 244
K+ L CW WFI ++ ++ HK + +S Q
Sbjct: 11 LKVGHLLLVLCCWVVSVVYLNWFISSGIMETKMMGGGGGGGGKMWHK-KWWENISGQGCK 69
Query: 245 ILQQKQQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCD 304
I QQ Q + A WR KIL+ +V+ +S+W+F + + +RKETLASMCD
Sbjct: 70 IHQQYYQYIGSKKVKRA-LWR-KILLTWVVGWFIVSLWIFSYMSLQGTEKRKETLASMCD 127
Query: 305 ERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAY 364
ERARMLQDQFNVSMNH+ A++IL+STFHH K PSA+DQKTF +YTERTAFERPLTSGVAY
Sbjct: 128 ERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQKTFAKYTERTAFERPLTSGVAY 187
Query: 365 ALKVLHSEREQFEKQHGWKIKKMETEDQTLVQ--DCTPENLDPAPVQDEYAPVIFSQETV 422
A++VLHSEREQFEKQ GW IK+M+T +Q V D PE L+P+PVQ+EYAPVIF+Q+T+
Sbjct: 188 AVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDTI 247
Query: 423 SHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATP 482
+H++S++++SGKEDREN+LRAR SGKGVLT PF+LLK+N LGV+LTFAVY DLP +ATP
Sbjct: 248 AHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATP 307
Query: 483 EQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGL 542
+RI+AT GYLG +DV SLVEKLL QLASKQ+++VNVYDTTN + PI MYG + +
Sbjct: 308 NERIQATDGYLGGVFDVESLVEKLLQQLASKQSVIVNVYDTTNHTHPIAMYGSNESGDVF 367
Query: 543 LRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVE 602
VS L+FGDP RKHEMHCRFKQKPP PW AI SIG++VI LLVGHIFHA +NRIA+VE
Sbjct: 368 FHVSTLNFGDPFRKHEMHCRFKQKPPWPWVAITTSIGILVIALLVGHIFHATVNRIAEVE 427
Query: 603 NDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQT 662
+DY + MELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD Q +Y +T
Sbjct: 428 DDYRKEMELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRT 487
Query: 663 AHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIY 722
A SGK L+SLIN+VLDQAKIE G+LE E V F + +LD+VLSLFS K+ KG+ELA+Y
Sbjct: 488 AQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVY 547
Query: 723 VSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEK 782
VSD VPE++IGDPGRFRQIITNL+GNSIKFT DKGHIFV++HL ++V ++V +K
Sbjct: 548 VSDHVPELLIGDPGRFRQIITNLMGNSIKFT-DKGHIFVTIHLVEEVVRSIEV-----DK 601
Query: 783 SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR-----IKLLVTVEDT 837
NS NTLSG PV D +SWE FK + + L+V+VEDT
Sbjct: 602 ESNS--------ENTLSGSPVADSRRSWEGFKAFSQEGPLGSFSSPSSDLVNLIVSVEDT 653
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G GIPLE+Q I+TPFMQ S SR +GGTGIGLSIS+CLV LM GEIGFVS P TGSTF
Sbjct: 654 GEGIPLESQPLIYTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKTGSTF 713
Query: 898 SFTVTFTEGERNSLDPKWQQYVPD----VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
+FT FT G +S + K QQ SEF G+ AL+ID +S+RA+V+RYH+QRL +
Sbjct: 714 TFTAVFTNGHCSSNECKVQQINNQPHSASSEFEGMTALIIDPRSVRAKVSRYHIQRLGIH 773
Query: 954 VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
V + + ++ S +S+ + +VLI+++VWD+++GL H++ +R G+
Sbjct: 774 VEMVSDLKQGLSTISNGNII-----INMVLIEQEVWDRDLGLSSHFVNNTRRIDQGVP-- 826
Query: 1014 RNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP 1073
PK+F+L S S ++TKPLR S+L Q K R+
Sbjct: 827 ---PKLFILVNSSSSFKASVNLGVHNPIVITKPLRASMLAASLQRAMGVQNKGAPHRELQ 883
Query: 1074 SLG--HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
SL HLL+G++IL+VDDN VNR VA GALKK+GA V CV G+ A+ L PPH FDACF
Sbjct: 884 SLSLRHLLRGRKILIVDDNSVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACF 943
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMPEMDGF+AT ++R +E+ +N ++ S + F N+ WHVPILAMTADVI A++
Sbjct: 944 MDIQMPEMDGFEATKRVREMEDSVNREV-----SMDDFENITNWHVPILAMTADVIHATH 998
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
E+C+K GMD YVSKPFE EQLY V+RFF S
Sbjct: 999 EECLKWGMDGYVSKPFEAEQLYREVSRFFQS 1029
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 46 WLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMS--CEKKAQIFLQHSNVSHNQLHALATL 103
W++G+ IV F + G E+ + ++ C+++A++ NVS N + A++ L
Sbjct: 95 WVVGWFIVSLWIFSYM----SLQGTEKRKETLASMCDERARMLQDQFNVSMNHIQAMSIL 150
Query: 104 FSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDV 154
S DQ K T L +G+ A++V +S++++F+KQ W + +
Sbjct: 151 ISTFHHAKSPSAIDQKTFAKYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRM 210
Query: 155 KQMDQCPV 162
++Q PV
Sbjct: 211 DTLEQNPV 218
>gi|190148361|gb|ACE63263.1| histidine kinase 3B [Populus trichocarpa]
Length = 1019
Score = 1118 bits (2892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/974 (58%), Positives = 708/974 (72%), Gaps = 63/974 (6%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W K+LV +++ I +SVW+FW + + +RKETLASMCDERARMLQDQFNVSMNHV A
Sbjct: 84 WWRKLLVAWIVGWITVSVWIFWYMSSQAFEKRKETLASMCDERARMLQDQFNVSMNHVQA 143
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
++IL+STFHH K+PSA+DQ+TF YTERTAFERPLTSGVAYA++V+HSEREQFE Q GW
Sbjct: 144 MSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVMHSEREQFENQQGWT 203
Query: 384 IKKMETEDQTLVQ--DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENIL 441
IK+M+T +Q+ VQ D + L+P+P+Q+EYAPVIF+Q+TV+H+VS+DM+SG EDREN+L
Sbjct: 204 IKRMDTFEQSPVQKDDNVAKALEPSPIQEEYAPVIFAQDTVAHVVSLDMLSGTEDRENVL 263
Query: 442 RARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPS 501
RARASGKGVLT PF+LLK+N LGV+LTFAVY TDLP +A P +RI+AT GYLG +D+ S
Sbjct: 264 RARASGKGVLTAPFRLLKTNRLGVILTFAVYKTDLPSNAMPNERIQATDGYLGGIFDIES 323
Query: 502 LVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHC 561
LVEKLL QLASKQTI+VNVYD TN S PI+MYG +V+D GL VS L+FGDP RKHEM C
Sbjct: 324 LVEKLLQQLASKQTILVNVYDITNQSHPISMYGSNVSDDGLEHVSALNFGDPFRKHEMRC 383
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
RFKQKPP PW AI SIG++VI LL+G+IFHA +NRIA+VE+DY+EMMELK RAEAADVA
Sbjct: 384 RFKQKPPWPWLAITTSIGILVIALLIGYIFHATMNRIAKVEDDYNEMMELKKRAEAADVA 443
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNGVLGML MLMDTELDA Q DY +TA +SGK L+SLIN+VLDQA
Sbjct: 444 KSQFLATVSHEIRTPMNGVLGMLHMLMDTELDATQQDYVRTAQDSGKALVSLINEVLDQA 503
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIESG++E E + F L ++D VL+LFS KA++KG+ELA+YVSD VPE++IGDPGRFRQI
Sbjct: 504 KIESGKIELEAMQFDLRAIMDEVLALFSGKAHEKGVELAVYVSDGVPEILIGDPGRFRQI 563
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
ITNL+GNSIKFT+ KGHIF++VHL ++V +DV+ + + NTLSG
Sbjct: 564 ITNLMGNSIKFTK-KGHIFLTVHLVEEVMDSIDVETESSSR-------------NTLSGL 609
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGR-----IKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856
PV DR +SW FK + + L I L+V+VEDTG GIPLEAQ R+FTPFMQ
Sbjct: 610 PVADRCRSWVGFKTFNPEGSSHTLSPSSSDLINLIVSVEDTGEGIPLEAQPRVFTPFMQV 669
Query: 857 DSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQ 916
D S SR YGGTGIGLSIS+CLV LM G+IGFVS P GSTF+FT F+ G NS D K Q
Sbjct: 670 DPSISRKYGGTGIGLSISKCLVGLMNGDIGFVSIPDIGSTFTFTAVFSNGCSNSNDSKLQ 729
Query: 917 ------QYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDT 970
Q S+F+G+ ALV+D K +RA+V+RY +QRL + V + + S +S+
Sbjct: 730 KQRLKTQTNTMSSKFQGMTALVVDPKPVRAKVSRYQIQRLGIHVELVLDLNQGLSSISNE 789
Query: 971 CSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
+ +V I+++VWDK+ + ++ K Q+ G+ K+FLL S+S
Sbjct: 790 NKV-----VNMVFIEQEVWDKDSSISALFVNKLQKIVSGVST-----KLFLLGNSLSS-- 837
Query: 1031 RDELKSDGIVT--LLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG--HLLKGKQILV 1086
R + G+ T ++TKPL+ S+L Q +K + PSL LL G+++L+
Sbjct: 838 RTNTATSGVYTPSVITKPLKASMLAASLQRAMGGNKGNPCNGEHPSLSLRKLLVGRKMLI 897
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
VDDN VN VA ALKK+GA V C D G+ A+ L PPH FDACFMD+QMPEMDGF+AT
Sbjct: 898 VDDNKVNLMVAAAALKKYGADVVCADSGQKAIKLLKPPHKFDACFMDIQMPEMDGFEATR 957
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
+IR +E+ WH+PILAMTADVIQA+ E+C +CGMD YVSKP
Sbjct: 958 RIRDMESN--------------------WHIPILAMTADVIQATYEECQRCGMDGYVSKP 997
Query: 1207 FEDEQLYTAVARFF 1220
FE EQLY V+RF
Sbjct: 998 FEAEQLYHEVSRFL 1011
Score = 48.1 bits (113), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
L W++G++ V S+ AF +E M C+++A++ NVS N + A++
Sbjct: 88 LLVAWIVGWITV-SVWIFWYMSSQAFEKRKETLASM-CDERARMLQDQFNVSMNHVQAMS 145
Query: 102 TLF---------SESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAE 152
L S DQ + T L +G+ A++V +S++++F+ Q W +
Sbjct: 146 ILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVMHSEREQFENQQGWTIK 205
Query: 153 DVKQMDQCPVE-DVNVSWKLDHSVLK 177
+ +Q PV+ D NV+ L+ S ++
Sbjct: 206 RMDTFEQSPVQKDDNVAKALEPSPIQ 231
>gi|224075549|ref|XP_002304678.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222842110|gb|EEE79657.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1029
Score = 1110 bits (2871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/984 (57%), Positives = 708/984 (71%), Gaps = 73/984 (7%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W K+LV +++ I +SVW+FW + + +RKETLASMCDERARMLQDQFNVSMNHV A
Sbjct: 84 WWRKLLVAWIVGWITVSVWIFWYMSSQAFEKRKETLASMCDERARMLQDQFNVSMNHVQA 143
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
++IL+STFHH K+PSA+DQ+TF YTERTAFERPLTSGVAYA++V+HSEREQFE Q GW
Sbjct: 144 MSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVMHSEREQFENQQGWT 203
Query: 384 IKKMETEDQTLVQ--DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENIL 441
IK+M+T +Q+ VQ D + L+P+P+Q+EYAPVIF+Q+TV+H+VS+DM+SG EDREN+L
Sbjct: 204 IKRMDTFEQSPVQKDDNVAKALEPSPIQEEYAPVIFAQDTVAHVVSLDMLSGTEDRENVL 263
Query: 442 RARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLG---------- 491
RARASGKGVLT PF+LLK+N LGV+LTFAVY TDLP +A P +RI+AT G
Sbjct: 264 RARASGKGVLTAPFRLLKTNRLGVILTFAVYKTDLPSNAMPNERIQATDGSSDLLMTPIR 323
Query: 492 YLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFG 551
YLG +D+ SLVEKLL QLASKQTI+VNVYD TN S PI+MYG +V+D GL VS L+FG
Sbjct: 324 YLGGIFDIESLVEKLLQQLASKQTILVNVYDITNQSHPISMYGSNVSDDGLEHVSALNFG 383
Query: 552 DPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMEL 611
DP RKHEM CRFKQKPP PW AI SIG++VI LL+G+IFHA +NRIA+VE+DY+EMMEL
Sbjct: 384 DPFRKHEMRCRFKQKPPWPWLAITTSIGILVIALLIGYIFHATMNRIAKVEDDYNEMMEL 443
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RAEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELDA Q DY +TA +SGK L+
Sbjct: 444 KKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDATQQDYVRTAQDSGKALV 503
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
SLIN+VLDQAKIESG++E E + F L ++D VL+LFS KA++KG+ELA+YVSD VPE++
Sbjct: 504 SLINEVLDQAKIESGKIELEAMQFDLRAIMDEVLALFSGKAHEKGVELAVYVSDGVPEIL 563
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDPGRFRQIITNL+GNSIKFT+ KGHIF++VHL ++V +DV+ + +
Sbjct: 564 IGDPGRFRQIITNLMGNSIKFTK-KGHIFLTVHLVEEVMDSIDVETESSSR--------- 613
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR-----IKLLVTVEDTGVGIPLEAQ 846
NTLSG PV DR +SW FK + + L I L+V+VEDTG GIPLEAQ
Sbjct: 614 ----NTLSGLPVADRCRSWVGFKTFNPEGSSHTLSPSSSDLINLIVSVEDTGEGIPLEAQ 669
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+FTPFMQ D S SR YGGTGIGLSIS+CLV LM G+IGFVS P GSTF+FT F+ G
Sbjct: 670 PRVFTPFMQVDPSISRKYGGTGIGLSISKCLVGLMNGDIGFVSIPDIGSTFTFTAVFSNG 729
Query: 907 ERNSLDPKWQ------QYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
NS D K Q Q S+F+G+ ALV+D K +RA+V+RY +QRL + V + +
Sbjct: 730 CSNSNDSKLQKQRLKTQTNTMSSKFQGMTALVVDPKPVRAKVSRYQIQRLGIHVELVLDL 789
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
S +S+ + +V I+++VWDK+ + ++ K Q+ G+ K+F
Sbjct: 790 NQGLSSISNENKV-----VNMVFIEQEVWDKDSSISALFVNKLQKIVSGVST-----KLF 839
Query: 1021 LLATSISETDRDELKSDGIVT--LLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG-- 1076
LL S+S R + G+ T ++TKPL+ S+L Q +K + PSL
Sbjct: 840 LLGNSLSS--RTNTATSGVYTPSVITKPLKASMLAASLQRAMGGNKGNPCNGEHPSLSLR 897
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
LL G+++L+VDDN VN VA ALKK+GA V C D G+ A+ L PPH FDACFMD+QM
Sbjct: 898 KLLVGRKMLIVDDNKVNLMVAAAALKKYGADVVCADSGQKAIKLLKPPHKFDACFMDIQM 957
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PEMDGF+AT +IR +E+ WH+PILAMTADVIQA+ E+C +
Sbjct: 958 PEMDGFEATRRIRDMESN--------------------WHIPILAMTADVIQATYEECQR 997
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
CGMD YVSKPFE EQLY V+RF
Sbjct: 998 CGMDGYVSKPFEAEQLYHEVSRFL 1021
Score = 48.1 bits (113), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
L W++G++ V S+ AF +E M C+++A++ NVS N + A++
Sbjct: 88 LLVAWIVGWITV-SVWIFWYMSSQAFEKRKETLASM-CDERARMLQDQFNVSMNHVQAMS 145
Query: 102 TLF---------SESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAE 152
L S DQ + T L +G+ A++V +S++++F+ Q W +
Sbjct: 146 ILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVMHSEREQFENQQGWTIK 205
Query: 153 DVKQMDQCPVE-DVNVSWKLDHSVLK 177
+ +Q PV+ D NV+ L+ S ++
Sbjct: 206 RMDTFEQSPVQKDDNVAKALEPSPIQ 231
>gi|297845680|ref|XP_002890721.1| hypothetical protein ARALYDRAFT_472928 [Arabidopsis lyrata subsp.
lyrata]
gi|297336563|gb|EFH66980.1| hypothetical protein ARALYDRAFT_472928 [Arabidopsis lyrata subsp.
lyrata]
Length = 1039
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/956 (59%), Positives = 705/956 (73%), Gaps = 43/956 (4%)
Query: 280 SVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSA 339
S+W+FW + +RKETLASMCDERARMLQDQFNVSMNHV A++IL+STFHH K PSA
Sbjct: 108 SIWMFWYFSSQAMEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSA 167
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQ--D 397
+DQ+TF EYT+RT+FERPLTSGVAYA++VLHSERE+FE+Q GW I+KM + +Q V D
Sbjct: 168 IDQRTFSEYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDD 227
Query: 398 CTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKL 457
E L+P+PVQ+EYAPVIF+Q+TVSH+VS+DM+SGKEDREN+LRAR+SGKGVLT PF L
Sbjct: 228 YDLEALEPSPVQEEYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPL 287
Query: 458 LKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIV 517
+K+N LGV+LTFAVY DLP +ATP++RIEAT GYLG +D+ SLVE LL QLASKQTI+
Sbjct: 288 IKTNRLGVILTFAVYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTIL 347
Query: 518 VNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINAS 577
VNVYDTTN S PI+MYG +V+ GL RVS L FGDP RKHEM CRFKQKPP P ++ S
Sbjct: 348 VNVYDTTNHSQPISMYGSNVSADGLERVSPLIFGDPFRKHEMRCRFKQKPPWPVLSMVTS 407
Query: 578 IGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPM 637
G++VI LLV HI HA ++RI +VE D +M +LK +AEAADVAKSQFLATVSHEIRTPM
Sbjct: 408 FGILVIALLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPM 467
Query: 638 NGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHL 697
NGVLGML MLMDTELD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE E V F L
Sbjct: 468 NGVLGMLHMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEEVRFDL 527
Query: 698 HDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKG 757
+LD+VLSLFSSK+ QKG+ELA+Y+SDRVP+++IGDPGRFRQI+TNL+GNSIKFT+ KG
Sbjct: 528 RGILDDVLSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIKFTE-KG 586
Query: 758 HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLD 817
HIFV+VHL +++ +D + +S TLSG PV DR +SWENFK
Sbjct: 587 HIFVTVHLVEELFESIDGETASSPES-------------TLSGLPVADRQRSWENFKAFS 633
Query: 818 NTNTMEQLG--RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISR 875
N + + I L+V+VEDTGVGIPLEAQ RIFTPFMQ S SRT+GGTGIGLSIS+
Sbjct: 634 NEHRSFEPSPLDINLIVSVEDTGVGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISK 693
Query: 876 CLVELMGGEIGFVSEPGTGSTFSFTVTFTEG----ERNSLDPKWQQYVPDVSEFRGLRAL 931
CLV LM GEIGF S P GSTF+FT F+ G ER + DP+ P SEFRG++A+
Sbjct: 694 CLVGLMKGEIGFSSTPKVGSTFTFTAVFSNGMQTTERKN-DPQ-NNNQPIFSEFRGMKAV 751
Query: 932 VIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDK 991
V+D + RA+V+ YH QRL + V V ++ A YL +T + ++LI++++W+K
Sbjct: 752 VVDHRPARAKVSWYHFQRLGIRVEVVPRVEQALRYLKIGTTT-----VNMILIEQEIWNK 806
Query: 992 EIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGI--VTLLTKPLRL 1049
E + + ++ +K L +S PK+ LLA S+ E+ E GI ++ KPLR
Sbjct: 807 EAEVFI-----KKLQKDPLFLS---PKLILLANSV-ESSISEALCTGIDPPIVIVKPLRA 857
Query: 1050 SVLIGCFQEDPESSKKLQQKRKKPS---LGHLLKGKQILVVDDNMVNRRVAEGALKKHGA 1106
S+L Q + + K P L +LL G++IL+VDDN VN RVA GALKK+GA
Sbjct: 858 SMLAATLQRGLGIGIREPPQHKGPPALILRNLLLGRKILIVDDNNVNLRVAAGALKKYGA 917
Query: 1107 IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSA 1166
V C + G A+ L PPH FDACFMD+QMPEMDGF+AT +IR +E E+N++I +GE+
Sbjct: 918 DVVCAESGIKAISLLKPPHEFDACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALI 977
Query: 1167 EMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
GN WH+P+LAMTADVIQA++E+C+KCGMD YVSKPFE EQLY V+RFF S
Sbjct: 978 VENGNKTSWHLPVLAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFNS 1033
Score = 42.4 bits (98), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 79 CEKKAQIFLQHSNVSHNQLHALATLFSES---------DQIASLKCTREPGSGMLLHNGI 129
C+++A++ NVS N + A++ L S DQ + T L +G+
Sbjct: 131 CDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTFSEYTDRTSFERPLTSGV 190
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPV 162
AM+V +S+++EF++Q W + ++Q PV
Sbjct: 191 AYAMRVLHSEREEFERQQGWTIRKMYSLEQNPV 223
>gi|224053503|ref|XP_002297846.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|190148359|gb|ACE63262.1| histidine kinase 3A [Populus trichocarpa]
gi|222845104|gb|EEE82651.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1020
Score = 1095 bits (2833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/980 (57%), Positives = 703/980 (71%), Gaps = 64/980 (6%)
Query: 259 RSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSM 318
R + W K+LV +++ I +SVW+FW + + +RKETL SMCDERARMLQDQFNVSM
Sbjct: 79 RISKTWWRKLLVAWIVGWITVSVWIFWYMSSQAFEKRKETLTSMCDERARMLQDQFNVSM 138
Query: 319 NHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEK 378
NHV A++IL+STFHH K+PSA+DQ+TF YTERTAFERPLTSGVAYA++VLHSEREQFEK
Sbjct: 139 NHVQAMSILISTFHHAKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEK 198
Query: 379 QHGWKIKKMETEDQTLVQ--DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKED 436
Q GW IK+M++ +Q V D P+ L+P+P+Q+EYAPVIF+Q+TV+H+VS+DM+SG ED
Sbjct: 199 QQGWTIKRMDSFEQNPVHKDDNAPKALEPSPIQEEYAPVIFAQDTVAHVVSLDMLSGTED 258
Query: 437 RENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGAS 496
REN+LRARASGKGVLT PF+LLK+ LGV+LTFAVY TDLP +ATP +RI+AT GYLG
Sbjct: 259 RENVLRARASGKGVLTAPFRLLKTKRLGVILTFAVYKTDLPSNATPNERIQATDGYLGGI 318
Query: 497 YDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRK 556
+D+ SLVEKLL QLASKQTI+VNVYDTTN S PI+MYG +V+D GL VS L+ DP RK
Sbjct: 319 FDIESLVEKLLQQLASKQTILVNVYDTTNQSCPISMYGSNVSDDGLEHVSALNLEDPFRK 378
Query: 557 HEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAE 616
HEM CRFKQKPP PW AI SIG++VI LL+G+IFHA +NRIA+VE+D H+MMEL +AE
Sbjct: 379 HEMRCRFKQKPPWPWLAITTSIGILVIALLIGYIFHATMNRIAKVEDDCHKMMELTKQAE 438
Query: 617 AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIND 676
AADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LDA Q DY +TA +SGK L+SLIN+
Sbjct: 439 AADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDANQQDYVRTAQDSGKALVSLINE 498
Query: 677 VLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPG 736
VLDQAKIESG++E E + F L ++D+VL+LFS KA++KGIELA+YVSD VPE++IGDPG
Sbjct: 499 VLDQAKIESGKIELEEMQFDLRAIMDDVLALFSGKAHEKGIELAVYVSDGVPEMLIGDPG 558
Query: 737 RFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYN 796
RFRQIITNL+GNSIKFT+ KGHIF++VH ++V +DV+ + N
Sbjct: 559 RFRQIITNLMGNSIKFTK-KGHIFLTVHPVEEVMDSIDVETE-------------SSSLN 604
Query: 797 TLSGFPVVDRWKSWENFKMLDNTNTMEQLGR-----IKLLVTVEDTGVGIPLEAQVRIFT 851
TLSG PV DR +S FK+ + L + L+V+VEDTG GIPLEAQ R+FT
Sbjct: 605 TLSGLPVADRRRSCAGFKIFSREGSSHTLSPSSSDLVNLIVSVEDTGEGIPLEAQPRVFT 664
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
PFMQ D S SR YGGTGIGLSIS+CLV LM GEIGF S P TGSTF+FT F G NS
Sbjct: 665 PFMQVDPSISRKYGGTGIGLSISKCLVGLMNGEIGFASIPDTGSTFTFTAVFRNGCSNSN 724
Query: 912 DPKWQ------QYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
D K Q Q SEF+ + ALV+D K +RA V+RY +QRL + V + + + S
Sbjct: 725 DSKQQKQRIKNQCNTTPSEFQDMTALVVDPKPVRANVSRYQIQRLGIHVELVSDLNQGLS 784
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
+S+ ++ ++++VW+K+ + H++ Q+ + G+ K+FLL S
Sbjct: 785 IISNENRI-----FKMIFVEQEVWEKDSSISAHFVNNLQKIERGVS-----SKLFLLGNS 834
Query: 1026 ISETDRDELKSDGIVTL--LTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSL---GHLLK 1080
+S + R + G TL +TKPL+ S+L Q +K + + PSL HL+
Sbjct: 835 LS-SSRTNTATSGAYTLSVITKPLKASMLAASLQRAMGGNKGNPRNGEHPSLSLCNHLV- 892
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
G++IL+VDDN VN VA ALKK+GA V C D G+ A+ L PPH FDACFMD+QMPEMD
Sbjct: 893 GRKILIVDDNKVNLIVAAAALKKYGAEVICADSGKMAIKLLKPPHQFDACFMDIQMPEMD 952
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
GF+AT +IR +E+ H+PILAMTADVIQA+ E+C +CGMD
Sbjct: 953 GFEATRRIRDMESN--------------------GHIPILAMTADVIQATYEECQRCGMD 992
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
YVSKPFE EQLY V+RF
Sbjct: 993 GYVSKPFEAEQLYQEVSRFL 1012
Score = 45.8 bits (107), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
L W++G++ V S+ AF +E M C+++A++ NVS N + A++
Sbjct: 88 LLVAWIVGWITV-SVWIFWYMSSQAFEKRKETLTSM-CDERARMLQDQFNVSMNHVQAMS 145
Query: 102 TLFSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAE 152
L S DQ + T L +G+ A++V +S++++F+KQ W +
Sbjct: 146 ILISTFHHAKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIK 205
Query: 153 DVKQMDQCPV 162
+ +Q PV
Sbjct: 206 RMDSFEQNPV 215
>gi|449445544|ref|XP_004140532.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
gi|449518188|ref|XP_004166125.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
Length = 1010
Score = 1092 bits (2824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/975 (57%), Positives = 714/975 (73%), Gaps = 41/975 (4%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W ++LV +VL I S+W+F + + +RKE L SMCDERARMLQDQFNVSMNH+ A
Sbjct: 55 WWRRLLVAWVLSSILASLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQA 114
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
++IL+STFHH K+PSA+DQ+TF YTERTAFERPLTSGVAYA++VLHS+RE+FEKQ GW
Sbjct: 115 MSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSDRERFEKQQGWT 174
Query: 384 IKKMETEDQTLVQ--DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENIL 441
IK+M+ +Q+ V D PE+L+P+P QDEYAPVIF+Q+T+SH+VS+DM+SG EDR N+L
Sbjct: 175 IKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRNNVL 234
Query: 442 RARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPS 501
RARASGKGVLT PFKL+K+N LGV+LTFAVY DLP +ATP +RI+AT GYLG +D+ S
Sbjct: 235 RARASGKGVLTAPFKLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIES 294
Query: 502 LVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHC 561
LVEKLL QLAS QTI+VNVYDTTN S PI+MYG DV++ GL VS L+FGDP RKHEM C
Sbjct: 295 LVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGLQHVSPLNFGDPDRKHEMRC 354
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
RFKQK P PW A+ SIG+++I LL+G+IFHA +NRIA+VE+DYHEMM LK RAE AD+A
Sbjct: 355 RFKQKQPWPWLAMTTSIGILIIALLLGYIFHATLNRIAKVEDDYHEMMVLKKRAEDADIA 414
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNGVLGML +LMDT+LD Q DY +TA +SGK L+SLIN+VLDQA
Sbjct: 415 KSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQA 474
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIESG+LE E +PF+L LD++LSLFS K+ +KG+ELA+YVSD VPE ++GDPGRFRQI
Sbjct: 475 KIESGKLELEAIPFNLRADLDDILSLFSGKSQEKGLELAVYVSDSVPETLVGDPGRFRQI 534
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
ITNLVGNSIKFT+ KGHIFV+V+L +V +D++ +E S NS TLSG+
Sbjct: 535 ITNLVGNSIKFTE-KGHIFVTVNLVKEVIESIDLE---IESSKNS----------TLSGY 580
Query: 802 PVVDRWKSWENFKMLDNTNT------MEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855
PV +R SW F+ + I L+V+VEDTGVGIPLEAQ RIFTPFMQ
Sbjct: 581 PVANRRLSWAGFRTFSQEGSTACHFMTSPPDLINLMVSVEDTGVGIPLEAQSRIFTPFMQ 640
Query: 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKW 915
S SRT+GGTGIGLSIS+CLV LM GEIGFVS P GSTF+FT FT +S
Sbjct: 641 VRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTNCSNSSEYNNT 700
Query: 916 QQY----VPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
QQ + SEF+G+RALV+D + IRA+V+RYH+QRL + V V + + S + +
Sbjct: 701 QQIKNTSISATSEFKGMRALVVDHQPIRAKVSRYHIQRLAINVEVLSDLNQCLSTTTISG 760
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
ST + ++ +++ +WD+ + H+ +K R + PK+FLL +SIS +
Sbjct: 761 ST-----VNMIFVEQKLWDQNVSTSDHF-IKNLRNSYAVP-----PKLFLLTSSISSSKA 809
Query: 1032 DELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK-P--SLGHLLKGKQILVV 1087
SD T++ KPLR +L K + + P SL +LL G++ILV+
Sbjct: 810 STTVSDVFTPTVILKPLRAGMLAASLHRVMNVGIKGNPRNGELPVLSLRNLLLGRKILVI 869
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
DDN VNR VA GAL+++GA V C + GR A+ LTPPH+FDACFMD+QMPEMDGF+AT +
Sbjct: 870 DDNKVNRIVAAGALQRYGADVVCENSGRDAIQLLTPPHHFDACFMDIQMPEMDGFEATRR 929
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR +E+ IN+ I GE S E + N W VPILAMTADVIQA++E+C++CGMD YVSKPF
Sbjct: 930 IREIEHRINDGIQVGELSKEAYENTCYWRVPILAMTADVIQATHEECLRCGMDGYVSKPF 989
Query: 1208 EDEQLYTAVARFFMS 1222
E E+LY V++FF S
Sbjct: 990 EVERLYREVSQFFHS 1004
Score = 43.5 bits (101), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
L W+L I+ S+ A +E G M C+++A++ NVS N + A++
Sbjct: 59 LLVAWVLS-SILASLWIFHYMSSQATEKRKEALGSM-CDERARMLQDQFNVSMNHIQAMS 116
Query: 102 TLFSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAE 152
L S DQ + T L +G+ A++V +S ++ F+KQ W +
Sbjct: 117 ILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSDRERFEKQQGWTIK 176
Query: 153 DVKQMDQCPVED 164
+ +++Q PV +
Sbjct: 177 RMDKIEQSPVHE 188
>gi|18396292|ref|NP_564276.1| histidine kinase 3 [Arabidopsis thaliana]
gi|75168994|sp|Q9C5U1.1|AHK3_ARATH RecName: Full=Histidine kinase 3; AltName: Full=Arabidopsis histidine
kinase 3; Short=AtHK3; AltName: Full=Protein AUTHENTIC
HIS-KINASE 3; AltName: Full=Protein ORESARA 12
gi|13537198|dbj|BAB40775.1| histidine kinase [Arabidopsis thaliana]
gi|332192685|gb|AEE30806.1| histidine kinase 3 [Arabidopsis thaliana]
Length = 1036
Score = 1087 bits (2812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/953 (58%), Positives = 698/953 (73%), Gaps = 39/953 (4%)
Query: 280 SVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSA 339
S+W FW + +RKETLASMCDERARMLQDQFNVSMNHV A++IL+STFHH K PSA
Sbjct: 107 SIWTFWYFSSQAMEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSA 166
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQ--D 397
+DQ+TF EYT+RT+FERPLTSGVAYA++VLHSERE+FE+Q GW I+KM + +Q V D
Sbjct: 167 IDQRTFSEYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDD 226
Query: 398 CTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKL 457
E L+P+PVQ+EYAPVIF+Q+TVSH+VS+DM+SGKEDREN+LRAR+SGKGVLT PF L
Sbjct: 227 YDLEALEPSPVQEEYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPL 286
Query: 458 LKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIV 517
+K+N LGV+LTFAVY DLP +ATP++RIEAT GYLG +D+ SLVE LL QLASKQTI+
Sbjct: 287 IKTNRLGVILTFAVYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTIL 346
Query: 518 VNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINAS 577
VNVYD TN S PI+MYG +V+ GL RVS L FGDP RKHEM CRFKQKPP P ++ S
Sbjct: 347 VNVYDITNHSQPISMYGTNVSADGLERVSPLIFGDPLRKHEMRCRFKQKPPWPVLSMVTS 406
Query: 578 IGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPM 637
G++VI LLV HI HA ++RI +VE D +M +LK +AEAADVAKSQFLATVSHEIRTPM
Sbjct: 407 FGILVIALLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPM 466
Query: 638 NGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHL 697
NGVLGML MLMDTELD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE E V F L
Sbjct: 467 NGVLGMLHMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEEVRFDL 526
Query: 698 HDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKG 757
+LD+VLSLFSSK+ QKG+ELA+Y+SDRVP+++IGDPGRFRQI+TNL+GNSIKFT+ KG
Sbjct: 527 RGILDDVLSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIKFTE-KG 585
Query: 758 HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLD 817
HIFV+VHL D++ +D + +S TLSG PV DR +SWENFK
Sbjct: 586 HIFVTVHLVDELFESIDGETASSPES-------------TLSGLPVADRQRSWENFKAFS 632
Query: 818 NTNTME---QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSIS 874
+ I L+V+VEDTGVGIP+EAQ RIFTPFMQ S SRT+GGTGIGLSIS
Sbjct: 633 SNGHRSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTPFMQVGPSISRTHGGTGIGLSIS 692
Query: 875 RCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVID 934
+CLV LM GEIGF S P GSTF+FT F+ G + + + K P SEFRG++A+V+D
Sbjct: 693 KCLVGLMKGEIGFSSTPKVGSTFTFTAVFSNGMQPA-ERKNDNNQPIFSEFRGMKAVVVD 751
Query: 935 DKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIG 994
+ RA+V+ YH QRL + V V ++ A YL +T + ++LI++++W++E
Sbjct: 752 HRPARAKVSWYHFQRLGIRVEVVPRVEQALHYLKIGTTT-----VNMILIEQEIWNREAD 806
Query: 995 LVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGI--VTLLTKPLRLSVL 1052
+ ++ +K L +S PK+ LLA S+ E+ E GI ++ KPLR S+L
Sbjct: 807 DFI-----KKLQKDPLFLS---PKLILLANSV-ESSISEALCTGIDPPIVIVKPLRASML 857
Query: 1053 IGCFQEDPESSKKLQQKRKKPS---LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVT 1109
Q + + K P L +LL G++IL+VDDN VN RVA GALKK+GA V
Sbjct: 858 AATLQRGLGIGIREPPQHKGPPALILRNLLLGRKILIVDDNNVNLRVAAGALKKYGADVV 917
Query: 1110 CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMF 1169
C + G A+ L PPH FDACFMD+QMPEMDGF+AT +IR +E E+N++I +GE+
Sbjct: 918 CAESGIKAISLLKPPHEFDACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVEN 977
Query: 1170 GNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
GN WH+P+LAMTADVIQA++E+C+KCGMD YVSKPFE EQLY V+RFF S
Sbjct: 978 GNKTSWHLPVLAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFNS 1030
Score = 42.4 bits (98), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 79 CEKKAQIFLQHSNVSHNQLHALATLFSES---------DQIASLKCTREPGSGMLLHNGI 129
C+++A++ NVS N + A++ L S DQ + T L +G+
Sbjct: 130 CDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTFSEYTDRTSFERPLTSGV 189
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPV 162
AM+V +S+++EF++Q W + ++Q PV
Sbjct: 190 AYAMRVLHSEREEFERQQGWTIRKMYSLEQNPV 222
>gi|110288960|gb|AAP53311.2| histidine kinase 3, putative, expressed [Oryza sativa Japonica Group]
Length = 1186
Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/936 (59%), Positives = 692/936 (73%), Gaps = 11/936 (1%)
Query: 240 QQRQMILQQKQQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETL 299
+Q + Q ++ QTP + + KW + L++ VL+G+ SVW+F + + RR E L
Sbjct: 216 KQANELCQHEKLLQTPSV-KISRKWSKRALLLGVLVGLCSSVWIFSSMHADVVARRIENL 274
Query: 300 ASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLT 359
+MCDERARMLQDQFNVSMNHVHALAILVSTFHH K+PSA+DQKTF ++T RT FERPL
Sbjct: 275 ENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLM 334
Query: 360 SGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQ 419
SGVAYALKVLHSERE FE++ GWKIKKMETEDQ+LV D PE L P+PVQDEYAPVIFSQ
Sbjct: 335 SGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQ 394
Query: 420 ETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQD 479
ETV HI+S+DMMSGKEDR+NILR+RA+GKG LT PF LLKSNHLGVVLTF VY DLP D
Sbjct: 395 ETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYKYDLPPD 454
Query: 480 ATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD 539
ATPE+RIEATLGYLGAS+DVPSLVE+LL QLASKQ IVV +YD TN + P MY DV
Sbjct: 455 ATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMYDSDVIA 514
Query: 540 TGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIA 599
+ L +SN+DFGDP+RKH MHCRFK P +PW+AI S V +I LLVG+I +A +N +
Sbjct: 515 SDDLHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVLLVGYIIYATLNSLE 574
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+ E++Y M +LK RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD Q D+
Sbjct: 575 EAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDF 634
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
TA SGK LI+LIN+VLD AKIESG++E E V F + D+LDNV+SLFS K+ KGIEL
Sbjct: 635 VVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIEL 694
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
A+ VSD+VP+V+IGDP RFRQIITNLVGNS+KFT+ +GHIF+ VHL ++V+ K++ D
Sbjct: 695 AVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTE-QGHIFIRVHLIEEVKRKMEALDDT 753
Query: 780 LEKSLN-SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTG 838
+++ + K+ YNTLSG V + K+ E+F+M +++ + + + LLVTVEDTG
Sbjct: 754 SPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKDSS--DAIDSVNLLVTVEDTG 811
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
+GI +AQ RIFTPFMQAD STSRTYGGTGIGLSI++ LVELMGGEIGFVS+PG STFS
Sbjct: 812 IGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSSTFS 871
Query: 899 FTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
FT F E ++ D K P +F+G+RALV+D + RAEVT YHL+RL + +A
Sbjct: 872 FTAIFKENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLGIQCDLAA 931
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
+ + A S L ++C++SV L +VL+DK+ W ++ GL L R KG L+ + +PK
Sbjct: 932 TSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLKSWQTMPK 991
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS---L 1075
FLLA SI+ D D L+ G + KPLRLS + C + L +R + + L
Sbjct: 992 FFLLAGSITPADSDCLRLAGYSNSIRKPLRLSTVAACLSK--ALGVGLTGRRSRDNSLVL 1049
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
+L GK ILVVDDN VNR VA GALKK+GAIVTCVD G+ A+ +L PPH FDACFMD+Q
Sbjct: 1050 RSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFMDVQ 1109
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGN 1171
MPEMDGF+AT +R +E++IN+ I + S+ FG+
Sbjct: 1110 MPEMDGFEATRLVRSVESKINDTIQAA-SAKNPFGD 1144
>gi|116109353|gb|ABJ74169.1| histidine kinase 1 [Medicago sativa]
Length = 1027
Score = 1080 bits (2793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/978 (57%), Positives = 705/978 (72%), Gaps = 52/978 (5%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
WR K+L+ +VL +S+W+F + +RKETLASMCDERARMLQDQFNVSMNH+ A
Sbjct: 82 WR-KLLLAWVLGWFIVSLWIFCGINLHNTEKRKETLASMCDERARMLQDQFNVSMNHIQA 140
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
++IL+STFHH K+PSA+DQKTF +YTERTAFERPLTSGVAYA++VL SEREQFEKQ GW
Sbjct: 141 MSILISTFHHAKNPSAIDQKTFAKYTERTAFERPLTSGVAYAVRVLQSEREQFEKQQGWS 200
Query: 384 IKKMETEDQTLVQ--DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENIL 441
IK+M+T +Q V D P+ L+P P+ +EYAPVIF+Q+T+SH++SID++SGKEDREN+L
Sbjct: 201 IKRMDTMEQNPVHEDDYVPDELEPPPIHEEYAPVIFAQDTISHVISIDVLSGKEDRENVL 260
Query: 442 RARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPS 501
RAR SGKGVLT PF+LLK+N LGV+LTFAVY DLP +ATP +RI+AT GYLG +++ S
Sbjct: 261 RARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFEIES 320
Query: 502 LVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHC 561
LVEKLL QLASKQT++VNVYDTTN + PI MYG DV+ VS L+FGDP RKHEMHC
Sbjct: 321 LVEKLLQQLASKQTVLVNVYDTTNQTHPIPMYGSDVSGDEFYHVSFLNFGDPFRKHEMHC 380
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
RFKQKPP P A SIG++VITLLVGHI HA ++RIA+VE+DY EMM LK RAEAADVA
Sbjct: 381 RFKQKPPFPRLATGTSIGILVITLLVGHICHATVSRIAKVESDYQEMMVLKKRAEAADVA 440
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNGVLGM+ MLMDT+LD Q +Y +TA SGK L+S+IN+VLDQA
Sbjct: 441 KSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDQA 500
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIESG++E E V F + ++D+VLSLFS K+ KG+ELA+YVSD+VP+ +IGDPGRFRQI
Sbjct: 501 KIESGKIELEAVLFDIRAIMDDVLSLFSEKSQGKGVELAVYVSDQVPQQLIGDPGRFRQI 560
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
ITNL+GNSIKFT DKGHIFV++HL ++V ++V+ E + +H TLSGF
Sbjct: 561 ITNLMGNSIKFT-DKGHIFVTIHLVEEVFHSIEVER---ESTSKDAEH-------TLSGF 609
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGR------IKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855
PV D +SWE F+ + + I L+V+VEDTG GIPLE+Q IFTPFMQ
Sbjct: 610 PVADGRRSWEGFRAFSHEGPLGSFSSTSSNDLISLIVSVEDTGDGIPLESQPMIFTPFMQ 669
Query: 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKW 915
S SR +GGTGIGLSIS+CLV LM GEIGFVSEP GSTF+FT FT NS + +
Sbjct: 670 VGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGSTFTFTAVFTNACPNSNELQT 729
Query: 916 QQYV----PDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
QQ P SEF G+ ALVID + +RAEV+RYH QRL + V + + ++ S ++D
Sbjct: 730 QQINNQPHPATSEFNGMAALVIDPRPVRAEVSRYHRQRLGVRVEIVSDLKQGLSTVTDGD 789
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHY---MLKQQRRKGGLEISRNLPKIFLLATSISE 1028
++ + +VLI+++VW+++ + H+ + K G EI PK+F+L S S
Sbjct: 790 AS-----INMVLIEQEVWERDSSISSHFVNNIRKIVEVDKGKEIP---PKLFILVNSSSS 841
Query: 1029 TDRDELKSD-GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP---SLGHLLKGKQI 1084
S T++TKPLR S+L Q K + + SL HLL G++I
Sbjct: 842 FRASSTASCLHNPTVVTKPLRASMLAASLQRAMGVGNKGNPRNGEHQGLSLKHLLSGRKI 901
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+VDDN VNR VA GALKK+GA V CV G A+ L PPH FDACFMD+QMPEMDGF+A
Sbjct: 902 LIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLRPPHQFDACFMDIQMPEMDGFEA 961
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T +IR +EN + ++ E+F H+PILAMTADV+QA++++C KCGMD YVS
Sbjct: 962 TRRIREIENNVKDR--------ELF-----VHLPILAMTADVMQATHQECSKCGMDGYVS 1008
Query: 1205 KPFEDEQLYTAVARFFMS 1222
KPFE EQLY V++FF S
Sbjct: 1009 KPFEAEQLYREVSKFFQS 1026
Score = 49.3 bits (116), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 17 LSASSKLKKASEPLQGPDRVNRR--STLAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEE 74
L ++ K+ + G RV R+ L W+LG+ IV F C + +E
Sbjct: 58 LGSTCKIHQQYYQCIGSKRVRRKLWRKLLLAWVLGWFIVSLWIF---CGINLHNTEKRKE 114
Query: 75 GRMS-CEKKAQIFLQHSNVSHNQLHALATLFS---------ESDQIASLKCTREPGSGML 124
S C+++A++ NVS N + A++ L S DQ K T
Sbjct: 115 TLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFAKYTERTAFERP 174
Query: 125 LHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVED 164
L +G+ A++V S++++F+KQ W + + M+Q PV +
Sbjct: 175 LTSGVAYAVRVLQSEREQFEKQQGWSIKRMDTMEQNPVHE 214
>gi|357462961|ref|XP_003601762.1| Histidine kinase [Medicago truncatula]
gi|355490810|gb|AES72013.1| Histidine kinase [Medicago truncatula]
Length = 1047
Score = 1078 bits (2787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/990 (56%), Positives = 710/990 (71%), Gaps = 63/990 (6%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
WR K+L+ +VL S+W+F + +RKETLASMCDERARMLQDQFNVSMNH+ A
Sbjct: 89 WR-KLLLAWVLGWFIASLWIFCGINLHNTEKRKETLASMCDERARMLQDQFNVSMNHIQA 147
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
++IL+STFHH K+PSA+DQKTF +YTERTAFERPLTSGVAYA++VL SEREQFEKQ GW
Sbjct: 148 MSILISTFHHAKNPSAIDQKTFAKYTERTAFERPLTSGVAYAVRVLQSEREQFEKQQGWS 207
Query: 384 IKKMETEDQTLVQ--DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENIL 441
IK+M+T +Q V D P+ L+P+P+ +EYAPVIF+Q+T+SH++SID++SGKEDREN+L
Sbjct: 208 IKRMDTMEQNPVHEDDYVPDELEPSPIHEEYAPVIFAQDTISHVISIDVLSGKEDRENVL 267
Query: 442 RARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPS 501
RAR SGKGVLT PF+LLK+N LGV+LTFAVY DLP +ATP +RI+AT GYLG +++ S
Sbjct: 268 RARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFEIES 327
Query: 502 LVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHC 561
LVEKLL QLASKQT++VNVYDTTN + I MYG DV+ VS L+FGDP RKHEMHC
Sbjct: 328 LVEKLLQQLASKQTVLVNVYDTTNQTHSIPMYGSDVSGDEFYHVSFLNFGDPFRKHEMHC 387
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
RFKQKPP P A SIG++VI LLVGHIFHA ++RIA+VE+DY EMM LK RAEAADVA
Sbjct: 388 RFKQKPPFPRLATGTSIGILVIALLVGHIFHATVSRIAKVEDDYQEMMVLKKRAEAADVA 447
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNGVLGM+ MLMDT+LD Q +Y +TA SGK L+S+IN+VLDQA
Sbjct: 448 KSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDQA 507
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIE-------------LAIYVSDRVP 728
KIESG++E E V F + ++D+VLSLFS K+ KG+E LA+YVSD+VP
Sbjct: 508 KIESGKIELEAVLFDIRSIMDDVLSLFSEKSQGKGVEALRVWFYSFLGAKLAVYVSDQVP 567
Query: 729 EVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788
+ +IGDPGRFRQIITNL+GNSIKFT DKGHIFV++HL ++V ++V+ E + +
Sbjct: 568 QQLIGDPGRFRQIITNLMGNSIKFT-DKGHIFVTIHLVEEVFHSIEVER---ESTSKDAE 623
Query: 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR------IKLLVTVEDTGVGIP 842
H TLSGFPV D +SWE F+ + + I L+V+VEDTG GIP
Sbjct: 624 H-------TLSGFPVADGRRSWEGFRAFSHEGPLGSFSSTSSNDLISLIVSVEDTGDGIP 676
Query: 843 LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902
LE+Q IFTPFMQ S SR +GGTGIGLSIS+CLV LM GEIGFVSEP GSTF+FT
Sbjct: 677 LESQPMIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGSTFTFTAV 736
Query: 903 FTEGERNSLDPKWQQYV----PDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
FT NS + K QQ P SEF G+ ALVID + +RAEV+RYH+QRL + V + +
Sbjct: 737 FTNACPNSNELKTQQINNQPHPATSEFNGMAALVIDPRPVRAEVSRYHIQRLGVRVEIVS 796
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL-P 1017
++ S ++D ++ + ++LI+++VWD++ + H+ + R+ ++ + + P
Sbjct: 797 DLKQGLSTVTDGDAS-----VNMILIEQEVWDRDSSISSHF-VNNIRKVVEIDKGKGIPP 850
Query: 1018 KIFLLATSISETDRDELKSDGI--VTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP-- 1073
K+F+L S S + R + + T++TKPLR S+L Q K + +
Sbjct: 851 KLFILVNS-SSSFRAGSTASCLHNPTVVTKPLRASMLAASLQRAMGVGNKGNPRNGEHQG 909
Query: 1074 -SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
SL HLL G++IL+VDDN VNR VA GALKK+GA V CV G A+ L PPH FDACFM
Sbjct: 910 LSLKHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLRPPHQFDACFM 969
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMPEMDGF+AT +IR +EN + ++ E+F H+PILAMTADV+QA+++
Sbjct: 970 DIQMPEMDGFEATRRIREIENSVKDR--------ELF-----VHLPILAMTADVMQATHQ 1016
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+C KCGMD YVSKPFE EQLY V++FF S
Sbjct: 1017 ECSKCGMDGYVSKPFEAEQLYREVSKFFQS 1046
Score = 47.4 bits (111), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 17 LSASSKLKKASEPLQGPDRVNRR--STLAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEE 74
L ++ K+ + G RV R L W+LG+ I F C + +E
Sbjct: 65 LGSTCKIHQQYYQCIGSKRVRRELWRKLLLAWVLGWFIASLWIF---CGINLHNTEKRKE 121
Query: 75 GRMS-CEKKAQIFLQHSNVSHNQLHALATLFSES---------DQIASLKCTREPGSGML 124
S C+++A++ NVS N + A++ L S DQ K T
Sbjct: 122 TLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFAKYTERTAFERP 181
Query: 125 LHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVED 164
L +G+ A++V S++++F+KQ W + + M+Q PV +
Sbjct: 182 LTSGVAYAVRVLQSEREQFEKQQGWSIKRMDTMEQNPVHE 221
>gi|20279446|gb|AAM18726.1|AC092548_4 putative histidine kinase [Oryza sativa Japonica Group]
Length = 925
Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/882 (61%), Positives = 663/882 (75%), Gaps = 10/882 (1%)
Query: 294 RRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTA 353
RR E L +MCDERARMLQDQFNVSMNHVHALAILVSTFHH K+PSA+DQKTF ++T RT
Sbjct: 8 RRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTT 67
Query: 354 FERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYA 413
FERPL SGVAYALKVLHSERE FE++ GWKIKKMETEDQ+LV D PE L P+PVQDEYA
Sbjct: 68 FERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYA 127
Query: 414 PVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYN 473
PVIFSQETV HI+S+DMMSGKEDR+NILR+RA+GKG LT PF LLKSNHLGVVLTF VY
Sbjct: 128 PVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYK 187
Query: 474 TDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMY 533
DLP DATPE+RIEATLGYLGAS+DVPSLVE+LL QLASKQ IVV +YD TN + P MY
Sbjct: 188 YDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMY 247
Query: 534 GPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHA 593
DV + L +SN+DFGDP+RKH MHCRFK P +PW+AI S V +I LLVG+I +A
Sbjct: 248 DSDVIASDDLHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIVLLVGYIIYA 307
Query: 594 AINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 653
+N + + E++Y M +LK RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD
Sbjct: 308 TLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 367
Query: 654 AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKAN 713
Q D+ TA SGK LI+LIN+VLD AKIESG++E E V F + D+LDNV+SLFS K+
Sbjct: 368 TTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSW 427
Query: 714 QKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773
KGIELA+ VSD+VP+V+IGDP RFRQIITNLVGNS+KFT+ +GHIF+ VHL ++V+ K+
Sbjct: 428 AKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTE-QGHIFIRVHLIEEVKRKM 486
Query: 774 DVKDKVLEKSLN-SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
+ D +++ + K+ YNTLSG V + K+ E+F+M +++ + + + LLV
Sbjct: 487 EALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKDSS--DAIDSVNLLV 544
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
TVEDTG+GI +AQ RIFTPFMQAD STSRTYGGTGIGLSI++ LVELMGGEIGFVS+PG
Sbjct: 545 TVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPG 604
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM 952
STFSFT F E ++ D K P +F+G+RALV+D + RAEVT YHL+RL +
Sbjct: 605 VSSTFSFTAIFKENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLGI 664
Query: 953 AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
+A + + A S L ++C++SV L +VL+DK+ W ++ GL L R KG L+
Sbjct: 665 QCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLKS 724
Query: 1013 SRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK 1072
+ +PK FLLA SI+ D D L+ G + KPLRLS + C + L +R +
Sbjct: 725 WQTMPKFFLLAGSITPADSDCLRLAGYSNSIRKPLRLSTVAACLSK--ALGVGLTGRRSR 782
Query: 1073 PS---LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
+ L +L GK ILVVDDN VNR VA GALKK+GAIVTCVD G+ A+ +L PPH FDA
Sbjct: 783 DNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDA 842
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGN 1171
CFMD+QMPEMDGF+AT +R +E++IN+ I + S+ FG+
Sbjct: 843 CFMDVQMPEMDGFEATRLVRSVESKINDTIQAA-SAKNPFGD 883
Score = 40.4 bits (93), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 79 CEKKAQIFLQHSNVSHNQLHALATLFS---------ESDQIASLKCTREPGSGMLLHNGI 129
C+++A++ NVS N +HALA L S DQ T L +G+
Sbjct: 17 CDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLMSGV 76
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVN 166
A+KV +S+++ F+++ W + ++ DQ V D N
Sbjct: 77 AYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYN 113
>gi|255573224|ref|XP_002527541.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223533091|gb|EEF34850.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 1011
Score = 1061 bits (2745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/980 (56%), Positives = 695/980 (70%), Gaps = 43/980 (4%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W K+L+++V+ +S +F + + +RRKETL+SMCD+RARMLQDQF+VS+NHVHA
Sbjct: 44 WLPKLLLLWVMFVAFVSYSIFNNMDAQNKVRRKETLSSMCDQRARMLQDQFSVSVNHVHA 103
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
LAILVSTFH+ K+PSA+DQ+TF EYT RT+FERPL SGVAYA +V++SERE+FE QHGW
Sbjct: 104 LAILVSTFHYNKNPSAIDQETFAEYTARTSFERPLLSGVAYAQRVVNSEREEFESQHGWT 163
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
IK ME E P+P++DEYAPVIFSQETVS+I S+DMMSG+EDRENIL A
Sbjct: 164 IKTMEKE--------------PSPLRDEYAPVIFSQETVSYIESLDMMSGEEDRENILNA 209
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
RA+GK VLT PF+LL S+HLGVVLTF VY + LP + T QRIEA+ GYLG ++DV SLV
Sbjct: 210 RATGKAVLTSPFRLLNSHHLGVVLTFPVYKSKLPPNPTVSQRIEASAGYLGGAFDVESLV 269
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLDFGDPSRKHEMHC 561
E LL QLA Q I+VNVYD TNAS P+ MYG D L+ S LDFGDP RKH+M C
Sbjct: 270 ENLLGQLAGNQAILVNVYDVTNASDPLIMYGVQNQDGDMSLVHESKLDFGDPFRKHQMIC 329
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R+ +K P WTA+ + VI LLVG+I + A N I +VE+D+HEM ELK RAEAADVA
Sbjct: 330 RYHEKAPTSWTALTTAFLFSVIGLLVGYILYGAANHIVKVEDDFHEMQELKVRAEAADVA 389
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNG+LGML +L+DT+L + Q DYAQTA GK LI+LIN+VLD+A
Sbjct: 390 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKALIALINEVLDRA 449
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+LE E VPF L +LD+VLSLFS K+ KGIELA++VSD+VPE+V+GDPGRFRQI
Sbjct: 450 KIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGIELAVFVSDKVPEIVLGDPGRFRQI 509
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK-DKVLEKSLNSVQHKSDKVYNTLSG 800
ITNLVGNS+KFT+ +GHIFV VHL ++ ++ K D L + V + TLSG
Sbjct: 510 ITNLVGNSVKFTE-RGHIFVKVHLDENAKATAFAKADSCLNGGSSDVIVSDSCQFKTLSG 568
Query: 801 FPVVDRWKSWENFK------------MLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
F D WE FK L+ T + + L+V+VEDTG+GIPL AQ R
Sbjct: 569 FEAADDRNGWEAFKHLVADEDFQSNGSLNVLTTNDACENVTLVVSVEDTGIGIPLHAQDR 628
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
+F PFMQADSSTSR YGGTGIGLSIS+CLVELMGG I FVS P GSTFSFT F ++
Sbjct: 629 VFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGHISFVSRPQVGSTFSFTAAFGRCKK 688
Query: 909 NSLDPKWQQYVPDV-SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
N + ++ D+ S FRGL+A+V+D K +RA VT YHL+RL + VA+S+++A
Sbjct: 689 NKFNKMEKRNSEDLPSSFRGLKAIVVDGKPVRAAVTTYHLKRLGILAEVASSLKVAAFTC 748
Query: 968 SDTCSTSVLPQLALVLIDKDVW-DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
+ S Q ++L++KD W E G ++L +R++ G LPK+ LLAT+I
Sbjct: 749 AKNGSLKSSAQPDIILVEKDSWISGEDGGSSVWLL--ERKQNGHVF--KLPKMILLATNI 804
Query: 1027 SETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS----LGHLLKG 1081
S + ++ K+ G T++ KPLR S++ C Q+ K Q + P+ L LL G
Sbjct: 805 SSDEFNKAKAAGFADTVIMKPLRASMVGACLQQVMGMGKTRPQGKDVPNGSSFLQSLLYG 864
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+ILVVDDNMVNRRVA GALKK GA V C D G+AA+ L PH+FDACFMD+QMPEMDG
Sbjct: 865 KKILVVDDNMVNRRVAAGALKKFGANVECADSGKAALKLLQLPHSFDACFMDIQMPEMDG 924
Query: 1142 FQATWQIRHLENEINEQIASGESSAE-MFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
F+AT +IR +E++ NEQI +G+S AE G WHVPILAMTADVI A+ ++C+K GMD
Sbjct: 925 FEATRRIRQMESQANEQI-NGQSMAEGGAARKGEWHVPILAMTADVIHATYDECLKSGMD 983
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
YVSKPFE+E LY AVA+FF
Sbjct: 984 GYVSKPFEEENLYQAVAKFF 1003
>gi|359473065|ref|XP_002285117.2| PREDICTED: histidine kinase 4-like [Vitis vinifera]
Length = 1003
Score = 1061 bits (2743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/989 (56%), Positives = 699/989 (70%), Gaps = 55/989 (5%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W K LV +++L S +++ + RR+E L SMCD+RARMLQDQF+VS+NHVHA
Sbjct: 34 WLPKFLVFWIMLMAVFSNFVYNKMDAANKERREEVLVSMCDQRARMLQDQFSVSVNHVHA 93
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
LAILVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA +V +SERE+FEKQHGW
Sbjct: 94 LAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVAYSERERFEKQHGWT 153
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
IK M+ E +P++DEYAPVIFSQETVS+I S+DMMSG+EDRENILRA
Sbjct: 154 IKTMKRE--------------ASPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRA 199
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
RA+GK VLT PF+LL S+HLGVVLTF VY + LP + T EQRIEAT GYLG ++DV SLV
Sbjct: 200 RATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTVEQRIEATAGYLGGAFDVESLV 259
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYGPDV--TDTGLLRVSNLDFGDPSRKHEMHC 561
E LL QLA Q I+VNVYD TN+S P+ MYG D LL S LDFGDP RKH+M C
Sbjct: 260 ENLLGQLAGNQAILVNVYDVTNSSDPLVMYGRQYQDVDMSLLHESKLDFGDPFRKHQMIC 319
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R+ QK P WT++ + VI LLVG+I + A I +VE+D+HEM ELK RAEAADVA
Sbjct: 320 RYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVA 379
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNG+LGML +L+DT+L + Q DYAQTA GK LI+LIN+VLD+A
Sbjct: 380 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKALITLINEVLDRA 439
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+LE E VPF+L +LD+VLSLFS K+ KG+ELA++VSD+VPE+VIGDPGRFRQI
Sbjct: 440 KIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPEMVIGDPGRFRQI 499
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN-----SVQHKSDKVYN 796
ITNLVGNS+KFT+ +GHIFV VHLA+ ++ +D K E LN + +
Sbjct: 500 ITNLVGNSVKFTE-RGHIFVQVHLAEHTKALMDAK---AETCLNGGSDEGLVSNGGSQFR 555
Query: 797 TLSGFPVVDRWKSWENFKML--------DNTNTM----EQLGRIKLLVTVEDTGVGIPLE 844
TLSG D SW+ FK L D +N M E ++ L+V+VEDTG+GIPL
Sbjct: 556 TLSGCEAADDQNSWDRFKHLIFDEDLRSDASNIMTVTSEASEKVTLMVSVEDTGIGIPLR 615
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CLVELMGG+I F+S P GSTFSFT F
Sbjct: 616 AQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIKFISRPQIGSTFSFTADFG 675
Query: 905 EGERNSLDPKWQQYVPDVS-EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ-- 961
++N+L + D+ FRGL+A+V+D + +RA VT+YHL+RL + V VANS++
Sbjct: 676 RCKKNALSDLKKSNSDDLPIGFRGLKAIVVDGRPVRAIVTKYHLKRLGILVEVANSIKKA 735
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYML---KQQRRKGGLEISRNLPK 1018
+A + + + ++ Q ++L++KD W E L+ L KQ R + LPK
Sbjct: 736 VAITGKNGSLTSGSGNQPDMILVEKDSWISEEDADLNLRLLDWKQNRH------TLKLPK 789
Query: 1019 IFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRK----KP 1073
+ LLAT+IS + D+ K+ G T++ KPLR S++ C Q+ KK QQ +
Sbjct: 790 MILLATNISSAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGLGKKRQQGKDMLNGSA 849
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L LL GK+ILVVDDN VNRRVA GALKK GA V C + G+AA+ L PHNFDACFMD
Sbjct: 850 FLQSLLCGKKILVVDDNKVNRRVAAGALKKFGADVECAESGKAALQLLQLPHNFDACFMD 909
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMPEMDGF+AT +IR +E++ NEQ+ +G + E G WHVPILAMTADVI A+ ++
Sbjct: 910 IQMPEMDGFEATRRIRLIESKANEQM-NGGCTPEGAATKGEWHVPILAMTADVIHATYDK 968
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
C+KCGMD YVSKPFE+E LY AVA+FF S
Sbjct: 969 CLKCGMDGYVSKPFEEENLYQAVAKFFKS 997
Score = 41.6 bits (96), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 79 CEKKAQIFLQHSNVSHNQLHALATLFS---------ESDQIASLKCTREPGSGMLLHNGI 129
C+++A++ +VS N +HALA L S DQ + T L +G+
Sbjct: 73 CDQRARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGV 132
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVED 164
A +V YS+++ F+KQ W + +K+ + P+ D
Sbjct: 133 AYAQRVAYSERERFEKQHGWTIKTMKR-EASPIRD 166
>gi|38347753|dbj|BAD01586.1| histidine kinase 3 [Zea mays]
Length = 1049
Score = 1061 bits (2743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/889 (60%), Positives = 658/889 (74%), Gaps = 20/889 (2%)
Query: 342 QKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPE 401
KTF ++T RT FERPL SGVAYALKVLH+ER+QFE+QHGWKIKKME DQ+LV D E
Sbjct: 165 NKTFEDFTARTTFERPLMSGVAYALKVLHNERQQFEEQHGWKIKKMEDGDQSLVHDYNLE 224
Query: 402 NLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSN 461
L+P+PVQDEYAPVIFSQETV HI+S+DMMSGKED +NILR+R++GKG LT PFKLLKSN
Sbjct: 225 KLEPSPVQDEYAPVIFSQETVKHIISVDMMSGKEDHDNILRSRSTGKGALTSPFKLLKSN 284
Query: 462 HLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVY 521
HLGVVLTF VY DLP +ATP++RI ATLGYLGAS+DVPSLV+KLL QLASK+ IVVN+Y
Sbjct: 285 HLGVVLTFTVYKYDLPPNATPQERIHATLGYLGASFDVPSLVDKLLEQLASKRKIVVNLY 344
Query: 522 DTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVV 581
DTTN ++PI MYG D T +G L +S++DFGDP+RKHEMHCRFK +P +PW+AI S V
Sbjct: 345 DTTNHTSPIEMYGSDFTPSGDLHISSIDFGDPTRKHEMHCRFKHEPSLPWSAIIISTAVA 404
Query: 582 VITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVL 641
+I LLVGHI +A +N + + E+DY M ELK +AEAADVAKSQFLATVSHEIRTPMNGVL
Sbjct: 405 IIVLLVGHIIYATLNSLEKAEHDYRVMRELKGQAEAADVAKSQFLATVSHEIRTPMNGVL 464
Query: 642 GMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVL 701
GMLQMLMDTELD Q D+ TA SGK LI+LIN+VLD AKIESGR+E E VPF + D+L
Sbjct: 465 GMLQMLMDTELDTTQQDFVVTAQESGKVLINLINEVLDLAKIESGRIELEAVPFDVRDIL 524
Query: 702 DNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFV 761
DNV+SLF K+ KGIELA+ VSD+VP+V+IGDP RFRQIITNLVGNS+KFT+ +GHIFV
Sbjct: 525 DNVISLFYEKSQAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTE-QGHIFV 583
Query: 762 SVHLADDVRSK----VDV---KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFK 814
VHL ++ K DV ++L S NS+ ++NTLSG V D W+S ENF
Sbjct: 584 QVHLVKELSRKGNNFCDVSAHNREILYDSDNSM------LWNTLSGLEVADSWRSLENFT 637
Query: 815 MLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSIS 874
M N+N + I+L V VEDTG+GI +AQ+RIFTPFMQADSSTSRTYGGTGIGLSI+
Sbjct: 638 MFKNSNG--ETDTIRLAVRVEDTGIGITKDAQMRIFTPFMQADSSTSRTYGGTGIGLSIT 695
Query: 875 RCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVID 934
+ LVELMGGEIGF S+ G GSTFSFT F E D K P +F+G+RAL+ID
Sbjct: 696 KRLVELMGGEIGFTSKSGVGSTFSFTAIFKENRGCPGDMKRYYSEPTPLDFQGMRALIID 755
Query: 935 DKSIRAEVTRYHLQRL--EMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE 992
+S RAEVT YHL+RL + ++ + + A S L C TS +VL+D + W K
Sbjct: 756 GRSARAEVTMYHLRRLGIQCSLVATSESESASSALMKAC-TSSKNNPDMVLVDTEAWGKG 814
Query: 993 IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL 1052
GL ++ + KG + S+ +PK LL +SIS + D L+ G + KPLRLS +
Sbjct: 815 SGLAFYHRFVDCQLKGAHKFSQPMPKTILLGSSISPVESDYLRLTGFGDCIRKPLRLSTI 874
Query: 1053 IGCFQEDPESSKKLQQKRKKP-SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCV 1111
+ C ++ QQ R + L +L GKQILVVDDN VNR+VA G+LKK+G+ VTCV
Sbjct: 875 VACLRKTLGVGVTRQQSRDQSLVLQSVLTGKQILVVDDNAVNRKVAAGSLKKYGSTVTCV 934
Query: 1112 DCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGN 1171
D G A+D L PPH FDACFMD+QMPEMDGF+AT IR +E +IN+ I GE SA +GN
Sbjct: 935 DSGSDAIDMLKPPHTFDACFMDVQMPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGN 994
Query: 1172 VGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
WHVPILAMTADVIQA+ E+CM+CGMD YVSKPFE++QLY+AVA F
Sbjct: 995 KAHWHVPILAMTADVIQATFEKCMQCGMDGYVSKPFEEQQLYSAVAHFL 1043
>gi|224108221|ref|XP_002314765.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|190148365|gb|ACE63265.1| cytokinin receptor 1B [Populus trichocarpa]
gi|222863805|gb|EEF00936.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1006
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/986 (55%), Positives = 694/986 (70%), Gaps = 49/986 (4%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W KIL+++V+ S+ ++ + +RRKE L+SMCD+RARMLQDQFNVS+NHVHA
Sbjct: 37 WLPKILLLWVMAMALFSLTIYNGMDADNRVRRKEVLSSMCDQRARMLQDQFNVSVNHVHA 96
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
LAILVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA +V++SER +FE+QHGW
Sbjct: 97 LAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERLEFERQHGWT 156
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
IK ME E P+P++DEYAPVIFSQETVS+I S+DMMSG+EDRENILRA
Sbjct: 157 IKTMERE--------------PSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRA 202
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
RASGK VLT PF+LL S+HLGVVLTF VY + LP T QRIEAT GYLG ++DV SLV
Sbjct: 203 RASGKAVLTGPFRLLGSHHLGVVLTFPVYKSKLPPSPTVAQRIEATAGYLGGAFDVESLV 262
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLDFGDPSRKHEMHC 561
E LL QLA Q I+VNVYD TN+S + MYG D LL S LDFGDP R+H M C
Sbjct: 263 ENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNQDGDMSLLHESKLDFGDPFRRHLMTC 322
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R+ +K P WTA+ + VI LLVG+I + A I +VE+D+HEM +LK +AEAADVA
Sbjct: 323 RYHEKAPTSWTALTTTFLFFVIGLLVGYILYEAAIHIVKVEDDFHEMQDLKVQAEAADVA 382
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNG+LGML +L+DT+L + Q DYAQTA GK LI+LIN+VLD+A
Sbjct: 383 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQVCGKALIALINEVLDRA 442
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+LE E VPFH+ ++D+VLSLFS K+ KGIELA++VSD+VPE+V+GDPGRFRQI
Sbjct: 443 KIEAGKLELEAVPFHIRSIVDDVLSLFSEKSRNKGIELAVFVSDKVPEIVVGDPGRFRQI 502
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK--VLEKSLNSVQHKSDKVYNTLS 799
ITNLVGNS+KFT+ +GH FV VHL + ++ D K ++ S SV + + TLS
Sbjct: 503 ITNLVGNSVKFTE-RGHTFVKVHLYEHAKATTDTKADTCLIGGSNESVLISGSQKFKTLS 561
Query: 800 GFPVVDRWKSWENFKMLDN--------TNTM---EQLGRIKLLVTVEDTGVGIPLEAQVR 848
G D SW+ FK L + N M E I L+V VEDTG+GIPL+AQ R
Sbjct: 562 GCEAADDQNSWDVFKHLSDEDFRFDASINVMTSNEASENITLMVCVEDTGIGIPLKAQSR 621
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
+F PF+QADSSTSR YGGTGIGLSIS+CLVELMGG+I F+S P GSTFSFT F+ ++
Sbjct: 622 VFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGQISFISRPEVGSTFSFTAVFSTCKK 681
Query: 909 NSLDPKWQQYVPDV-SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
N+ ++ D+ S FRGL+ALV+D K +RA VTRYHL+RL + V +++++A
Sbjct: 682 NAFTKMEKRNAEDLPSGFRGLKALVVDGKPVRAAVTRYHLKRLGILAEVVSNLKVAAGSC 741
Query: 968 ----SDTCSTSVLPQLALVLIDKDVW-DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
S T + + P ++L++KD W E G+ + L ++ + PK+ LL
Sbjct: 742 GKNGSLTSGSKIQPD--MILVEKDTWISGEDGVSNVWKLDWKQNGHAFK----FPKMILL 795
Query: 1023 ATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS----LGH 1077
AT+I+ ++ D+ K+ G T++ KPLR S++ C + KK Q + P+ L
Sbjct: 796 ATNITNSEFDKAKAAGFADTVIMKPLRASMVAACLLQVLGMGKKRSQGKCMPNGSSFLQS 855
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
LL GK+ILVVDDN VNRRVA GALKK GA V C D G+ A+ L PH FDACFMD+QMP
Sbjct: 856 LLCGKKILVVDDNRVNRRVAAGALKKFGADVECADSGKEALKLLQLPHTFDACFMDIQMP 915
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAE-MFGNVGLWHVPILAMTADVIQASNEQCMK 1196
EMDGF+AT +IR +E++ NEQ+ +GES E G WH+PILAMTADVI A++++C+K
Sbjct: 916 EMDGFEATRRIRQMESQANEQM-NGESMVEGGTARKGQWHIPILAMTADVIHATHDECLK 974
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFFMS 1222
CGMD YVSKPFE+E LY AVARFF S
Sbjct: 975 CGMDGYVSKPFEEENLYQAVARFFDS 1000
>gi|190148353|gb|ACE63259.1| cytokinin receptor 1 [Betula pendula]
Length = 1004
Score = 1041 bits (2691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/985 (55%), Positives = 695/985 (70%), Gaps = 48/985 (4%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W K L++++L+ +S ++ + + +RRKE L SMCD+RARMLQDQF+VS+NHVHA
Sbjct: 36 WLPKFLLLWILVMAFLSTMIYNSMDDDNKVRRKEILGSMCDQRARMLQDQFSVSVNHVHA 95
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
LAILVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA +V++SERE FE+QHGW
Sbjct: 96 LAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERESFERQHGWI 155
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
IK ME E P+PV+D YAPVIF+QE+VS+I S+DMMSG+EDRENILRA
Sbjct: 156 IKTMERE--------------PSPVRDVYAPVIFTQESVSYIESLDMMSGEEDRENILRA 201
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
A+GK VLT PF+LL S+HLGVVLTF VY + L ++ IEAT GY+G ++DV SLV
Sbjct: 202 TATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLSSSPAMQELIEATAGYVGGAFDVESLV 261
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDT--GLLRVSNLDFGDPSRKHEMHC 561
E LL QLA Q I+VNVYD TN+S P+ MYG D+ L S LDFGDP R+H+M C
Sbjct: 262 ENLLGQLAGNQAILVNVYDVTNSSDPLIMYGHQYQDSDLSLFHESKLDFGDPFRRHQMIC 321
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R+ QK P+ WTA+ + VI LLVG+I + A I +VE+D+HEM ELK RAEAADVA
Sbjct: 322 RYHQKAPMSWTALTTAFLFFVIGLLVGYILYGAGIHIVKVEDDFHEMEELKVRAEAADVA 381
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNG+LGML +L+DTEL + Q DYAQTA GK LI+LIN+VLD+A
Sbjct: 382 KSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQICGKALIALINEVLDRA 441
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KI++G+LE E VPF L +LD+VLSLFS K+ KGIELA++VSD+VPE+V+GDPGRFRQI
Sbjct: 442 KIDAGKLELEAVPFVLRSILDDVLSLFSEKSRHKGIELAVFVSDKVPEIVMGDPGRFRQI 501
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS-----DKVYN 796
+TNLVGNS+KFT+ +GHIFV VHLA+ + V+ K E LN +S + +
Sbjct: 502 VTNLVGNSVKFTE-RGHIFVKVHLAEHTMAMVNAK---AETCLNGGSDRSLFLSGGREFK 557
Query: 797 TLSGFPVVDRWKSWENFKML------------DNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
TLSG V D SW+ FK L + NT E + L+V VEDTG+GIPL
Sbjct: 558 TLSGCEVADERNSWDIFKHLVADEELRSEASRNMMNTNEASEHVTLMVCVEDTGIGIPLC 617
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
AQ R+F PFMQADSSTSR YGGTGIGLSIS+CLVELMGG+I F+S P GSTFSFT F
Sbjct: 618 AQDRVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVFG 677
Query: 905 EGERNSLDPKWQQYVPDV-SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
++N+ + D+ S FRGL+ALV+D+K +RA VTRYHL+RL + V VA+S ++A
Sbjct: 678 RCKKNAFSDVKKPISEDLPSGFRGLKALVVDEKPVRAAVTRYHLKRLGILVEVASSFKIA 737
Query: 964 CSYLSDTCSTSVLP-QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
+ S ++ Q LVL++KD W L+ L ++ G + LPK+ LL
Sbjct: 738 VAMTGKKGSLTLRKFQPDLVLVEKDSWMSAEEGGLNGWLLDWKQNGHI---FQLPKMILL 794
Query: 1023 ATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRK----KPSLGH 1077
AT+I + + D+ K+ G T++ KPLR S++ C Q+ KK QQ++ L
Sbjct: 795 ATNIDKAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGIGKKRQQEKDMLNGSSFLQS 854
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
LL GK+ILVVDDN VNRRVAEGALKK GA V C + G+AA+ L PHNFDACFMD+QMP
Sbjct: 855 LLCGKKILVVDDNRVNRRVAEGALKKFGADVECAESGKAALALLQLPHNFDACFMDIQMP 914
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EMDGF+AT QIR +E++ NEQI +G ++ E WHVPILAMTADVI A+ ++C+KC
Sbjct: 915 EMDGFEATRQIRVMESKENEQI-NGGATDEGAIRKREWHVPILAMTADVIHATYDECLKC 973
Query: 1198 GMDDYVSKPFEDEQLYTAVARFFMS 1222
GMD YVSKPFE+E LY AVA+FF S
Sbjct: 974 GMDGYVSKPFEEENLYQAVAKFFKS 998
Score = 40.4 bits (93), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 44 FLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATL 103
LW+L + ++ + S D V +E G M C+++A++ +VS N +HALA L
Sbjct: 42 LLWILVMAFLSTMIYN-SMDDDNKVRRKEILGSM-CDQRARMLQDQFSVSVNHVHALAIL 99
Query: 104 F---------SESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDV 154
S DQ + T L +G+ A +V S+++ F++Q W+ + +
Sbjct: 100 VSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERESFERQHGWIIKTM 159
Query: 155 KQMDQCPVEDV 165
++ + PV DV
Sbjct: 160 ER-EPSPVRDV 169
>gi|9802528|gb|AAF99730.1|AC004557_9 F17L21.11 [Arabidopsis thaliana]
Length = 1092
Score = 1041 bits (2691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/965 (56%), Positives = 682/965 (70%), Gaps = 71/965 (7%)
Query: 280 SVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSA 339
S+W FW + +RKETLASMCDERARMLQDQFNVSMNHV A++IL+STFHH K PSA
Sbjct: 107 SIWTFWYFSSQAMEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSA 166
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQ--D 397
+DQ+TF EYT+RT+FERPLTSGVAYA++VLHSERE+FE+Q GW I+KM + +Q V D
Sbjct: 167 IDQRTFSEYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDD 226
Query: 398 CTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKL 457
E L+P+PVQ+EYAPVIF+Q+TVSH+VS+DM+SGKEDREN+LRAR+SGKGVLT PF L
Sbjct: 227 YDLEALEPSPVQEEYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPL 286
Query: 458 LKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIV 517
+K+N LGV+LTFAVY DLP +ATP++RIEAT GYLG +D+ SLVE LL QLASKQTI+
Sbjct: 287 IKTNRLGVILTFAVYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTIL 346
Query: 518 VNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCR--------------- 562
VNVYD TN S PI+MYG +V+ GL RVS L FGDP RKHEM CR
Sbjct: 347 VNVYDITNHSQPISMYGTNVSADGLERVSPLIFGDPLRKHEMRCRYLQLAHTYVCNFFLF 406
Query: 563 -----------------FKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDY 605
FKQKPP P ++ S G++VI LLV HI HA ++RI +VE D
Sbjct: 407 ARIQVLTFCCELLPLCRFKQKPPWPVLSMVTSFGILVIALLVAHIIHATVSRIHKVEEDC 466
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
+M +LK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD Q DY +TA
Sbjct: 467 DKMKQLKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQQDYVRTAQA 526
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
SGK L+SLIN+VLDQAKIESG+LE E V F L +LD+VLSLFSSK+ QKG+ELA+Y+SD
Sbjct: 527 SGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYISD 586
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
RVP+++IGDPGRFRQI+TNL+GNSIKFT+ KGHIFV+VHL D++ +D + +S
Sbjct: 587 RVPDMLIGDPGRFRQILTNLMGNSIKFTE-KGHIFVTVHLVDELFESIDGETASSPES-- 643
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME---QLGRIKLLVTVEDTGVGIP 842
TLSG PV DR +SWENFK + I L+V+VEDTGVGIP
Sbjct: 644 -----------TLSGLPVADRQRSWENFKAFSSNGHRSFEPSPPDINLIVSVEDTGVGIP 692
Query: 843 LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902
+EAQ RIFTPFMQ S SRT+GGTGIGLSIS+CLV LM GEIGF S P GSTF+FT
Sbjct: 693 VEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSTPKVGSTFTFTAV 752
Query: 903 FTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
F+ G + + + K P SEFRG++A+V+D + RA+V+ YH QRL + V V ++
Sbjct: 753 FSNGMQPA-ERKNDNNQPIFSEFRGMKAVVVDHRPARAKVSWYHFQRLGIRVEVVPRVEQ 811
Query: 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
A YL +T + ++LI++++W++E + ++ +K L +S PK+ LL
Sbjct: 812 ALHYLKIGTTT-----VNMILIEQEIWNREADDFI-----KKLQKDPLFLS---PKLILL 858
Query: 1023 ATSISETDRDELKSDGI--VTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS---LGH 1077
A S+ E+ E GI ++ KPLR S+L Q + + K P L +
Sbjct: 859 ANSV-ESSISEALCTGIDPPIVIVKPLRASMLAATLQRGLGIGIREPPQHKGPPALILRN 917
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
LL G++IL+VDDN VN RVA GALKK+GA V C + G A+ L PPH FDACFMD+QMP
Sbjct: 918 LLLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESGIKAISLLKPPHEFDACFMDIQMP 977
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EMDGF+AT +IR +E E+N++I +GE+ GN WH+P+LAMTADVIQA++E+C+KC
Sbjct: 978 EMDGFEATRRIRDMEEEMNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQATHEECLKC 1037
Query: 1198 GMDDY 1202
GMD Y
Sbjct: 1038 GMDGY 1042
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 79 CEKKAQIFLQHSNVSHNQLHALATLFSES---------DQIASLKCTREPGSGMLLHNGI 129
C+++A++ NVS N + A++ L S DQ + T L +G+
Sbjct: 130 CDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTFSEYTDRTSFERPLTSGV 189
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPV 162
AM+V +S+++EF++Q W + ++Q PV
Sbjct: 190 AYAMRVLHSEREEFERQQGWTIRKMYSLEQNPV 222
>gi|449450139|ref|XP_004142821.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
gi|449523071|ref|XP_004168548.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
Length = 985
Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/986 (55%), Positives = 694/986 (70%), Gaps = 64/986 (6%)
Query: 264 WRMKILVVFVLLGIA-ISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVH 322
W K L+ F ++G+A IS+ ++ + +RR E L SMC++RARMLQDQF+VS+NHVH
Sbjct: 32 WLRKYLL-FWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEQRARMLQDQFSVSVNHVH 90
Query: 323 ALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGW 382
ALA+LVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA +V+HSER+ FEKQHGW
Sbjct: 91 ALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGW 150
Query: 383 KIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILR 442
IK M+ E P+P++DEYAPVIFSQETVS+I S+DMMSG+EDRENILR
Sbjct: 151 MIKTMKRE--------------PSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILR 196
Query: 443 ARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSL 502
ARA+GK VLT PF+LL S+HLGVVLTF VY + LP T E RIEAT GY+G ++DV SL
Sbjct: 197 ARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSKPTEEDRIEATAGYVGGAFDVESL 256
Query: 503 VEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDT--GLLRVSNLDFGDPSRKHEMH 560
VE LL QLA Q I+VNVYD TN+S P+ MYG D LL S+LDFGDP RKH M
Sbjct: 257 VENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDLSLLHESSLDFGDPFRKHLMI 316
Query: 561 CRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADV 620
CR++Q+ P WTA+ + VI LLVG+I + A I +VE+D+H M LK RAEAAD+
Sbjct: 317 CRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHILKVEDDFHAMQILKVRAEAADI 376
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKSQFLATVSHEIRTPMNG+LGML +L+DT+L + Q DYAQTA GK LI+LIN+VLD+
Sbjct: 377 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDR 436
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
AKIE+G+LE E VPF + +LD+VLSLFS K+ QKG+ELA++VSD+VPE+VIGDPGRFRQ
Sbjct: 437 AKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQ 496
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
IITNLVGNS+KFT+ +GHIFV VHLA+ + +D K V S + + + + TLSG
Sbjct: 497 IITNLVGNSVKFTE-RGHIFVKVHLAEHSKGSIDSK-YVNGISDSDLFISGGRDFQTLSG 554
Query: 801 FPVVDRWKSWENFK--------MLDNT-NTM----EQLGRIKLLVTVEDTGVGIPLEAQV 847
D W+NFK L+ T N+M E G + L+V+VEDTG+GI L AQ
Sbjct: 555 CEAADDQNGWDNFKHIIADEDFQLNATPNSMVVANEGCGHVTLMVSVEDTGIGILLHAQN 614
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R+F PFMQADSSTSR YGGTGIGLSIS+CLVELMGG+I F+S P GSTFSFT F + +
Sbjct: 615 RVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVFGKCK 674
Query: 908 RNSLD----PKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
+NS++ P ++ P FRG++A+++D K +RA VTRYHL+RL + V V +S+ +A
Sbjct: 675 KNSINDLKKPNSEELPP---SFRGMKAIIVDRKHVRASVTRYHLKRLGIKVEVTSSVNMA 731
Query: 964 CSYLSDTCST----SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
S + ST ++LP + LV D D+E G + LK S LPK+
Sbjct: 732 ASLSRENGSTIPGNAILPDMILVEKDTLNSDEECGTIHQLNLKLNGN------SFKLPKL 785
Query: 1020 FLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS---- 1074
LLAT+I+ + D+ K+ G T++ KPLR S++ C Q+ K ++ R P+
Sbjct: 786 ILLATNITTAELDKAKAVGFADTVIMKPLRASMVAACLQQ-VLGVKNQRRGRGVPNGSAF 844
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
L LL GK+IL+VDDN VNRRVA GALKK GA V C D G+AA+ L PHNFDACFMD+
Sbjct: 845 LQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDI 904
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMPEMDGF+AT IR +EN+ NE GES + G WH+PILAMTADVI A+ ++C
Sbjct: 905 QMPEMDGFEATRLIRMMENKENE----GES----YAGEGKWHMPILAMTADVIHATYDEC 956
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFF 1220
+KCGMD YVSKPFE+E LY VA+FF
Sbjct: 957 LKCGMDGYVSKPFEEENLYKEVAKFF 982
Score = 43.1 bits (100), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Query: 34 DRVNRRSTLAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVS 93
+R R L F W++G + S+ D V E G M CE++A++ +VS
Sbjct: 29 NRAWLRKYLLF-WIMGMAFI-SMLIYNGMDADNKVRRNEVLGSM-CEQRARMLQDQFSVS 85
Query: 94 HNQLHALATLF---------SESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQ 144
N +HALA L S DQ + T L +G+ A +V +S++ F+
Sbjct: 86 VNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFE 145
Query: 145 KQSIWLAEDVKQMDQCPVED 164
KQ W+ + +K+ + P+ D
Sbjct: 146 KQHGWMIKTMKR-EPSPIRD 164
>gi|116109372|gb|ABJ74170.1| histidine kinase 1 [Lupinus albus]
Length = 1043
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/992 (54%), Positives = 683/992 (68%), Gaps = 66/992 (6%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W+ K+ V +++ +S+ +F + + +R+ETLASMCDERARML DQFNVSMNH+ A
Sbjct: 84 WK-KLFVAWLVGLTMLSLCIFCCMSFQATEKRRETLASMCDERARMLHDQFNVSMNHIQA 142
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
L+IL+ST HH PSA+DQ+TF YTERTAFER L V K SEREQFEKQ GW
Sbjct: 143 LSILISTLHHATSPSAIDQRTFARYTERTAFER-LLQVVCICCKGTPSEREQFEKQQGWT 201
Query: 384 IKKMET--EDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENIL 441
IK+M+T E Q D PE L+P+ +Q+EYAPVIF+Q+T+SH++S+D +SGK DREN++
Sbjct: 202 IKRMDTVEEKQVHKDDYDPEKLEPSHIQEEYAPVIFAQDTLSHVISVDTLSGKGDRENVV 261
Query: 442 RARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPS 501
RAR SGKGVLT PF+LLK+N LGV+LTFAVY+ DLP +ATP +RI+AT GYLG +DV S
Sbjct: 262 RARESGKGVLTAPFRLLKTNRLGVILTFAVYSRDLPSNATPNERIQATNGYLGGVFDVES 321
Query: 502 LVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHC 561
LVEKLL QLASKQT++VNVYD TN + I MY +V VS L+FGDP RKHEM+C
Sbjct: 322 LVEKLLQQLASKQTVIVNVYDITNHTHHIPMYSSNVLGDTFYHVSTLNFGDPFRKHEMYC 381
Query: 562 R-----------------FKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVEND 604
R FKQKPP PW +I SIG++VI LLVGHIF+A +NRIA+VE+D
Sbjct: 382 RKSNAAKGACIFILLQNRFKQKPPRPWLSITTSIGILVIALLVGHIFYATVNRIAKVEDD 441
Query: 605 YHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAH 664
EM ELK RAEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD Q ++ +TA
Sbjct: 442 CREMRELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEFVRTAQ 501
Query: 665 NSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724
SGK L+SLIN+VLDQAKIE+G+LE E V F L +LD+VLSLFS K+ +KG+EL +YVS
Sbjct: 502 VSGKALMSLINEVLDQAKIEAGKLELEAVLFDLRAILDDVLSLFSEKSQEKGVELGVYVS 561
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV--RSKVDVKDKVLEK 782
D+VPE++IGDPGRFRQI TNL+GNSIKFT DKGH+FV+VHL ++V +KVD
Sbjct: 562 DQVPELLIGDPGRFRQITTNLMGNSIKFT-DKGHVFVTVHLVEEVVYSTKVD-------- 612
Query: 783 SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR-----IKLLVTVEDT 837
K NTLSGFPV D +SWE FK + I L+V+VEDT
Sbjct: 613 -------KESTSENTLSGFPVADSRRSWEGFKAFSQEGPLGSFSSSSGDLINLIVSVEDT 665
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G GIPLEAQ IFTPFMQ S SR +GGTGIGLSIS+CLV LM GEIGFVS P GSTF
Sbjct: 666 GEGIPLEAQPHIFTPFMQVGPSISRKHGGTGIGLSISKCLVHLMSGEIGFVSIPKIGSTF 725
Query: 898 SFTVTFTEGERNSLDPKWQQYV----PDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
+FT FT G +S + K QQ + P SEF+G+ A++ID + +RA+V+RYH+QRL +
Sbjct: 726 TFTAIFTNGLPSSNECKTQQIINQPHPASSEFKGMTAMIIDHRPVRAKVSRYHIQRLGIH 785
Query: 954 VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
V + + + LS+ + +++ + ++LI+++VWD++ G+ H++ + +
Sbjct: 786 VEMVSDLNQG---LSNVANANIV--INMILIEQEVWDRDSGMSSHFVDNICKI-----VH 835
Query: 1014 RNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE-SSKKLQQKRKK 1072
PK+F+L S + S T++TKPLR S+L Q +K +
Sbjct: 836 VVPPKMFILVKSTRSRASAVISSVHDPTVITKPLRASMLAASLQRSMGFQNKGTHRNSDL 895
Query: 1073 PSLG--HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
PSL HLL+G++IL+VDDN VNR VA ALKK+GA V CV G+ A+ L PPH FDAC
Sbjct: 896 PSLSLRHLLRGRRILIVDDNSVNRMVAAAALKKYGAEVVCVSSGKEAISSLKPPHQFDAC 955
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
FMD+QMPE+DGF+AT IR +E +N E S NV WHVPIL MTADVIQA+
Sbjct: 956 FMDIQMPEIDGFEATRTIRDMELSVN-----SEMSVYDIDNVSNWHVPILTMTADVIQAT 1010
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
E C++CGMD YVSKPFE EQLY V+RFF S
Sbjct: 1011 QEACLRCGMDGYVSKPFEAEQLYIEVSRFFQS 1042
>gi|444737612|emb|CCL97997.1| histidine kinase 2, putative, expressed [Musa balbisiana]
Length = 999
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/952 (56%), Positives = 680/952 (71%), Gaps = 59/952 (6%)
Query: 262 GKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHV 321
G W K+L ++++ S+W+FW + + +R+E LASMCDERARMLQDQFNVSMNH+
Sbjct: 66 GTWWRKLLFLWIIGWFLGSLWIFWFMNSQAVEKRREMLASMCDERARMLQDQFNVSMNHL 125
Query: 322 HALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHG 381
ALAIL+STFHH K PSA+DQ TF Y ERTAFERPLTSGVAYA+KVL SEREQFEKQ
Sbjct: 126 QALAILISTFHHAKDPSAIDQITFARYAERTAFERPLTSGVAYAVKVLRSEREQFEKQQR 185
Query: 382 WKIKKMETEDQTLV--QDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDREN 439
WKIK+M++ +Q +D EN +DEYAPVIF+Q+T H++S DM++GKEDREN
Sbjct: 186 WKIKRMDSTEQPPAREEDADLEN------RDEYAPVIFAQDTYKHVISFDMLTGKEDREN 239
Query: 440 ILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDV 499
ILRAR SGKGVLT PF+LLKS LGV+LT+AVY ++L ATP +RI+A +GYLG +DV
Sbjct: 240 ILRARESGKGVLTAPFRLLKSRRLGVILTYAVYKSELTSKATPAERIQAAIGYLGGIFDV 299
Query: 500 PSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEM 559
+LV+KLLHQLA K +++VNVYD TN PI MYG ++T+ GL +S L+FGDP RKHEM
Sbjct: 300 EALVDKLLHQLACKHSMMVNVYDKTNPDEPIIMYGSNMTNVGLYHISTLNFGDPIRKHEM 359
Query: 560 HCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAAD 619
HCRFKQK P+PW AI SIG +VI LLVG+IFHA ++RIA+VE+DY +MMELK RAEAAD
Sbjct: 360 HCRFKQKSPLPWLAITTSIGTLVIALLVGYIFHATVSRIAKVEDDYRQMMELKKRAEAAD 419
Query: 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLD 679
VAKSQFLATVSHEIRTPMNGVLGMLQMLMDT+LD Q DY +TA SGK L+SLIN+VLD
Sbjct: 420 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDITQEDYVRTAQASGKALVSLINEVLD 479
Query: 680 QAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFR 739
QAKIESG+LE E VPF L VLD++LSLF KA +KG+ELA+YVSD+VP+V++GD GR R
Sbjct: 480 QAKIESGKLELEAVPFDLRAVLDDILSLFYGKAQEKGLELAVYVSDQVPDVLVGDHGRIR 539
Query: 740 QIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLS 799
QIITNL+GNSIKFT+ +GHI+++VH+ ++V + +D + +V H +D TL
Sbjct: 540 QIITNLMGNSIKFTE-RGHIYLTVHIFEEVLNSLDKEIEV---------HSTD----TLC 585
Query: 800 GFPVVDRWKSWENFKML-------DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTP 852
GFPV +R +SWE+FK D + I L+++VEDTGVGIPLEAQ R+FTP
Sbjct: 586 GFPVANRRRSWESFKNFKLELPASDPSLLSTSSNHINLIISVEDTGVGIPLEAQSRVFTP 645
Query: 853 FMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLD 912
FMQ S SR +GGTGIGLSIS+CLV LM GEIGFVS+P GSTF+FTV T NS +
Sbjct: 646 FMQVGPSISRIHGGTGIGLSISKCLVGLMKGEIGFVSQPQIGSTFTFTVVLTRACTNSNE 705
Query: 913 PKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCS 972
K SEF G+ ALV+D + RA+VT+YHLQRL + + S L+ S
Sbjct: 706 YK-------SSEFHGMIALVVDHRPARAKVTKYHLQRLGVNAILEIDPNQVLSRLTSGTS 758
Query: 973 TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
T + +VL++K+ W K+ + + + KG ++PKI LLA S + +
Sbjct: 759 T-----INMVLVEKETWSKDSSI---WPFIISKLKGN---QLDIPKILLLANPTSSVNNN 807
Query: 1033 ELKS-DGIVTLLTKPLRLSVL-------IGCFQEDPESSKKLQQKRKKPSLGHLLKGKQI 1084
S + I T++TKPLR S+L +GC + + +L Q SL LL KQI
Sbjct: 808 TSSSMEYISTIITKPLRASMLQVSLRRAMGCGDGEHSRNGRLPQL----SLRGLLHEKQI 863
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
LVVDDN+VN RVA GALKK+GA VTC + G+ A+ L PPH FDACFMD+QMPEMDGF+A
Sbjct: 864 LVVDDNIVNLRVAYGALKKYGAEVTCAESGKKAIGMLKPPHKFDACFMDIQMPEMDGFEA 923
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
T +IR +E +IN+QI E E NV WHVPILAMTADVIQA++E+C++
Sbjct: 924 TKRIREMEADINKQIECREVPVETSENVLHWHVPILAMTADVIQATHEECLR 975
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
L FLW++G+ + GS+ + A E M C+++A++ NVS N L ALA
Sbjct: 72 LLFLWIIGWFL-GSLWIFWFMNSQAVEKRREMLASM-CDERARMLQDQFNVSMNHLQALA 129
Query: 102 TLFSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAE 152
L S DQI + L +G+ A+KV S++++F+KQ W +
Sbjct: 130 ILISTFHHAKDPSAIDQITFARYAERTAFERPLTSGVAYAVKVLRSEREQFEKQQRWKIK 189
Query: 153 DVKQMDQCPVED 164
+ +Q P +
Sbjct: 190 RMDSTEQPPARE 201
>gi|190148363|gb|ACE63264.1| cytokinin receptor 1A [Populus trichocarpa]
Length = 1006
Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/987 (55%), Positives = 689/987 (69%), Gaps = 55/987 (5%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W K+L+++V+ S+ ++ + +RRKE L SMCD+RARMLQDQF+VS+NHVHA
Sbjct: 37 WLPKVLLLWVMAMALFSLTIYNGMDADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHA 96
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
LAILVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA +V+ SER +FE+QHGW
Sbjct: 97 LAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYARRVIDSERHEFERQHGWT 156
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
IK ME E P+P++DEYAPVIFSQETVS+I S+DMMSG+EDRENILRA
Sbjct: 157 IKTMERE--------------PSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRA 202
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
RA+GK VLT PF+LL S+HLGVVLTF VY + LP T QRIEAT GYLG ++D+ SLV
Sbjct: 203 RATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPSPTVAQRIEATAGYLGGAFDIESLV 262
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDT--GLLRVSNLDFGDPSRKHEMHC 561
E LL QLA Q I+VNVYD TN+S + MYG D LL S LDFGDP RKH M C
Sbjct: 263 ENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNLDGDLSLLHESKLDFGDPFRKHLMTC 322
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R+ +K P WTA++ + VI LLVG+I + A I +VE+D+HEM ELK RAEAADVA
Sbjct: 323 RYHEKAPTSWTALSTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVA 382
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNGVLGML +L+DT+L + Q DYAQTA GK LI+LIN+VLD+A
Sbjct: 383 KSQFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDYAQTAQVCGKALIALINEVLDRA 442
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+LE E VPF + +LD+VLSLFS K+ KGIELA++VSD+VPE+V+GDPGRFRQI
Sbjct: 443 KIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVPEIVVGDPGRFRQI 502
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK-DKVLEKSLN-SVQHKSDKVYNTLS 799
ITNLVGNS+KFT+ +GHIFV VHL ++ ++ D K D L N SV + + TLS
Sbjct: 503 ITNLVGNSVKFTE-RGHIFVKVHLYENAKAITDTKVDTCLNGGSNESVLTSGSQKFKTLS 561
Query: 800 GFPVVDRWKSWENFK--------------MLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
G D SW+ FK ++ N E +G L+V VEDTG+GIPL+A
Sbjct: 562 GCEAADDQNSWDVFKHFSDEDFRFDASINVMTNNEASEDVG---LMVCVEDTGIGIPLKA 618
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q R+F PF+QADSSTSR YGGTGIGLSIS+CLVELMGG+I F+S P GSTFSFT F
Sbjct: 619 QGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQINFISRPEVGSTFSFTAVFGT 678
Query: 906 GERNSLDPKWQQYVPDV-SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
++N+ + ++ ++ S FRGL+ALV+D +RA VTRYHL+RL + V +S++LA
Sbjct: 679 CKKNTFNNMEKRNAEELPSGFRGLKALVVDGNPVRATVTRYHLKRLGILAEVVSSLKLAA 738
Query: 965 ----SYLSDTCSTSVLPQLALVLIDKDVW-DKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
S T + P ++L++KD W E G+ + L ++ + LPK+
Sbjct: 739 IGCGKNGSLTSGGKIHPD--IILVEKDSWISGEDGVSSVWQLDSKQNGHAFK----LPKM 792
Query: 1020 FLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS---- 1074
LLAT+I+ ++ D K G T++ KPLR S++ C + KK Q + P+
Sbjct: 793 ILLATNITNSEFDIAKGAGFADTVILKPLRSSMVAACLLQVLGMGKKRSQGKGMPNGSSF 852
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
L LL GK+ILVVDDN VNRRVA GALKK GA C + G+ A+ L PPH +DACFMD+
Sbjct: 853 LQSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKLLQPPHTYDACFMDI 912
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL-WHVPILAMTADVIQASNEQ 1193
QMPEMDGF+AT +IR +E++ NEQ+ +GES E + WH+PILAMTADVI A++++
Sbjct: 913 QMPEMDGFEATRRIRQMESQANEQM-NGESMVEEGTARKVQWHIPILAMTADVIHATHDE 971
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARFF 1220
C+K GMD YVSKPFE+E LY AVARFF
Sbjct: 972 CLKSGMDGYVSKPFEEENLYQAVARFF 998
>gi|224101927|ref|XP_002312478.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222852298|gb|EEE89845.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1007
Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/986 (55%), Positives = 687/986 (69%), Gaps = 52/986 (5%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W K+L+++V+ S+ ++ + +RRKE L SMCD+RARMLQDQF+VS+NHVHA
Sbjct: 37 WLPKVLLLWVMAMALFSLTIYNGMDADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHA 96
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
LAILVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA +V+ SER +FE+QHGW
Sbjct: 97 LAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYARRVIDSERHEFERQHGWT 156
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
IK ME E P+P++DEYAPVIFSQETVS+I S+DMMSG+EDRENILRA
Sbjct: 157 IKTMERE--------------PSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRA 202
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
RA+GK VLT PF+LL S+HLGVVLTF VY + LP T QRIEAT GYLG ++D+ SLV
Sbjct: 203 RATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPSPTVAQRIEATAGYLGGAFDIESLV 262
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDT--GLLRVSNLDFGDPSRKHEMHC 561
E LL QLA Q I+VNVYD TN+S + MYG D LL S LDFGDP RKH M C
Sbjct: 263 ENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNLDGDLSLLHESKLDFGDPFRKHLMTC 322
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R+ +K P WTA++ + VI LLVG+I + A I +VE+D+HEM ELK RAEAADVA
Sbjct: 323 RYHEKAPTSWTALSTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVA 382
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNGVLGML +L+DT+L + Q DYAQTA GK LI+LIN+VLD+A
Sbjct: 383 KSQFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDYAQTAQVCGKALIALINEVLDRA 442
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+LE E VPF + +LD+VLSLFS K+ KGIELA++VSD+VPE+V+GDPGRFRQI
Sbjct: 443 KIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVPEIVVGDPGRFRQI 502
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK-DKVLEKSLN-SVQHKSDKVYNTLS 799
ITNLVGNS+KFT+ +GHIFV VHL ++ ++ D K D L N SV + + TLS
Sbjct: 503 ITNLVGNSVKFTE-RGHIFVKVHLYENAKAITDTKVDTCLNGGSNESVLTSGSQKFKTLS 561
Query: 800 GFPVVDRWKSWENFK--------------MLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
G D SW+ FK ++ N E +G L+V VEDTG+GIPL+A
Sbjct: 562 GCEAADDQNSWDVFKHFSDEDFRFDASINVMTNNEASEDVG---LMVCVEDTGIGIPLKA 618
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q R+F PF+QADSSTSR YGGTGIGLSIS+CLVELMGG+I F+S P GSTFSFT F
Sbjct: 619 QGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQINFISRPEVGSTFSFTAVFGT 678
Query: 906 GERNSLDPKWQQYVPDV-SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA- 963
++N+ + ++ ++ S FRGL+ALV+D +RA VTRYHL+RL + V +S++LA
Sbjct: 679 CKKNTFNNMEKRNAEELPSGFRGLKALVVDGNPVRATVTRYHLKRLGILAEVVSSLKLAA 738
Query: 964 --CSYLSDTCSTSVLPQLALVLIDKDVW-DKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
C S ++L++KD W E G+ + L ++ + LPK+
Sbjct: 739 IGCGKNGSLTSGRGKIHPDIILVEKDSWISGEDGVSSVWQLDSKQNGHAFK----LPKMI 794
Query: 1021 LLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS----L 1075
LLAT+I+ ++ D K G T++ KPLR S++ C + KK Q + P+ L
Sbjct: 795 LLATNITNSEFDIAKGAGFADTVILKPLRSSMVAACLLQVLGMGKKRSQGKGMPNGSSFL 854
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
LL GK+ILVVDDN VNRRVA GALKK GA C + G+ A+ L PPH +DACFMD+Q
Sbjct: 855 QSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKLLQPPHTYDACFMDIQ 914
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL-WHVPILAMTADVIQASNEQC 1194
MPEMDGF+AT +IR +E++ NEQ+ +GES E + WH+PILAMTADVI A++++C
Sbjct: 915 MPEMDGFEATRRIRQMESQANEQM-NGESMVEEGTARKVQWHIPILAMTADVIHATHDEC 973
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFF 1220
+K GMD YVSKPFE+E LY AVARFF
Sbjct: 974 LKSGMDGYVSKPFEEENLYQAVARFF 999
>gi|88319749|emb|CAF31355.1| putative histidine kinase [Cucurbita maxima]
Length = 981
Score = 1029 bits (2660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/985 (55%), Positives = 693/985 (70%), Gaps = 66/985 (6%)
Query: 264 WRMKILVVFVLLGIA-ISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVH 322
W K L+ F ++G+A IS+ ++ + + +RR E L SMC++RARMLQDQFNVS+NHVH
Sbjct: 32 WLRKYLL-FWIMGMAFISMLIYNGMDADIKVRRNEVLGSMCEQRARMLQDQFNVSVNHVH 90
Query: 323 ALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGW 382
ALA+LVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA +V+HSER+ FEKQHGW
Sbjct: 91 ALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGW 150
Query: 383 KIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILR 442
I+ ME E P+P +DEYAPVIFSQETVS+I S+DMMSG+EDRENILR
Sbjct: 151 MIRTMEKE--------------PSPDRDEYAPVIFSQETVSYIESLDMMSGEEDRENILR 196
Query: 443 ARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSL 502
ARA+GK VLT PF+LL S+HLGVVLTF VY LP T E+RIEAT GY+G ++DV SL
Sbjct: 197 ARATGKAVLTRPFRLLGSHHLGVVLTFPVYKFKLPSIPTEEERIEATAGYVGGAFDVESL 256
Query: 503 VEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDT--GLLRVSNLDFGDPSRKHEMH 560
VE LL QLA Q I+VNVYD TN+S + MYG D L S+LDFGDP RKH M
Sbjct: 257 VENLLGQLAGNQAILVNVYDVTNSSDLLVMYGHQYQDGDLSLSHESSLDFGDPFRKHLMI 316
Query: 561 CRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADV 620
CR++Q+ P WTA+ + VI LLVG+I + A I +VE+D+HEM LK RAEAADV
Sbjct: 317 CRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQVLKVRAEAADV 376
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKSQFLATVSHEIRTPMNG+LGML +L+DT+L + Q DYAQTA GK LI+LIN+VLD+
Sbjct: 377 AKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDR 436
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
AKIE+G+LE E VPF + +LD+VLSLFS K+ QKG+ELA++VSD+VPE+VIGDPGRFRQ
Sbjct: 437 AKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQ 496
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSD-KVYNTLS 799
IITNLVGNS+KFT+ +GHIFV VHLA++ SKV + + + +S D + + TLS
Sbjct: 497 IITNLVGNSVKFTE-RGHIFVKVHLAEN--SKVSMDSEYVNGISDSGLFVLDGREFQTLS 553
Query: 800 GFPVVDRWKSWENFKML-----------DNTNTMEQLG--RIKLLVTVEDTGVGIPLEAQ 846
G D SW+NFK L N + + G + L+V+VEDTG+GI L AQ
Sbjct: 554 GREAADDQNSWDNFKHLIADDNFQSNAASNNSAVTNKGCDHVTLMVSVEDTGIGILLHAQ 613
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+FTPFMQADSSTSR YGGTGIGLSIS+CLVELMGG+I F+S P GSTFSFT F +
Sbjct: 614 NRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVFGKC 673
Query: 907 ERNSLD----PKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
++NS++ P ++ P FRG++A+V+D K +RA VTRYHL+RL + V V NS+ +
Sbjct: 674 KKNSMNDMKKPNSEELPP---SFRGMKAIVVDSKHVRASVTRYHLKRLGIIVEVTNSINM 730
Query: 963 ACSYLSDTCST----SVLPQLALVLIDKDVW--DKEIGLVLHYMLKQQRRKGGLEISRNL 1016
A S + ST ++LP ++L++KD+ D+E G++ H K S
Sbjct: 731 AASLFRENGSTLPRNTILPD--MILVEKDILNSDEECGIIHHLNWKPNGS------SVKF 782
Query: 1017 PKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSL 1075
PK+ LLAT+I+ + D+ ++ G T++ KPLR +++ C Q+ K ++ L
Sbjct: 783 PKLILLATNIATAELDKARAAGFADTVIMKPLRATMVAACLQQ-VLGVKNQRRPNGSAFL 841
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
LL GK+IL+VDDN VNRRVA GALKK GA V C D G++A+ L PHNFDACFMD+Q
Sbjct: 842 QSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLLQLPHNFDACFMDIQ 901
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MPEMDGF+AT +IR +E E N+ G S+ E G +PILAMTADVI A+ E+C+
Sbjct: 902 MPEMDGFEATRRIRTMEVEANK---GGLSATE-----GKRPIPILAMTADVIHATYEECL 953
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARFF 1220
KCGM+ YVSKPFE+E LY VARFF
Sbjct: 954 KCGMNGYVSKPFEEENLYKEVARFF 978
Score = 44.7 bits (104), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 15/140 (10%)
Query: 34 DRVNRRSTLAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVS 93
+R R L F W++G + S+ D V E G M CE++A++ NVS
Sbjct: 29 NRAWLRKYLLF-WIMGMAFI-SMLIYNGMDADIKVRRNEVLGSM-CEQRARMLQDQFNVS 85
Query: 94 HNQLHALATLFSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQ 144
N +HALA L S DQ + T L +G+ A +V +S++ F+
Sbjct: 86 VNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFE 145
Query: 145 KQSIWLAEDVKQMDQCPVED 164
KQ W+ ++ M++ P D
Sbjct: 146 KQHGWM---IRTMEKEPSPD 162
>gi|356499590|ref|XP_003518621.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 988
Score = 1026 bits (2654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/963 (56%), Positives = 678/963 (70%), Gaps = 58/963 (6%)
Query: 285 WLLKEKM----HLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAV 340
W + KM +RRKE L S+CD+RARMLQDQF+VS+NHVHALAILVSTFH+ +PSA+
Sbjct: 53 WCIYSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYSYPSAI 112
Query: 341 DQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTP 400
DQ+TF EYT RTAFERPL SGVAYA +V++SERE+FEK+HGW IK ME +
Sbjct: 113 DQETFAEYTARTAFERPLLSGVAYAQRVVNSERERFEKEHGWVIKTMERKSSL------- 165
Query: 401 ENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKS 460
V+DEYAPVIF+Q+TVS++ SIDMMSG+EDRENILRARA+GK VLT PF+LL S
Sbjct: 166 -------VRDEYAPVIFAQQTVSYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLGS 218
Query: 461 NHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNV 520
+HLGVVLTF VY + LPQ T E+RIEAT GY+G S+DV SLV+ LL QL Q I+VNV
Sbjct: 219 HHLGVVLTFPVYKSKLPQKPTVEERIEATAGYVGGSFDVESLVKNLLGQLDGNQAILVNV 278
Query: 521 YDTTNASAPINMYGPDVT--DTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASI 578
YD TN + P+ MYG D L S LDFGDP RKH+M CR+ QK P W A+ +
Sbjct: 279 YDVTNYTNPLIMYGNQYQEGDMSLAHESKLDFGDPYRKHQMICRYHQKAPTNWIALTTAF 338
Query: 579 GVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMN 638
VI LVG+I ++A N I +VE+D+HEM ELK RAEAADVAKSQFLATVSHEIRTPMN
Sbjct: 339 LFFVILFLVGYILYSAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMN 398
Query: 639 GVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698
G+LGML +L+DTEL + Q DYAQTA GK LI+LIN+VLD+AKIE+G+LE E VPF L
Sbjct: 399 GILGMLALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLR 458
Query: 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGH 758
++D+VLSLFS K+ KG+ELA++VSD+VP++V+GDPGRFRQIITNLVGNS+KFT+ +GH
Sbjct: 459 SIIDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTE-QGH 517
Query: 759 IFVSVHLADDVRSKVDVK-DKVLEKSLNSVQHKS-DKVYNTLSGFPVVDRWKSWENFKML 816
IFV VHLAD+ +S ++ K + L + V + S D + TLSG D SW+NFK L
Sbjct: 518 IFVKVHLADNRKSMMNGKHETFLNGESDEVFYISGDYHFKTLSGCEAADERNSWDNFKHL 577
Query: 817 ---------DNTNTM---EQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTY 864
+ TM E ++ L V VEDTG+GIP AQ RIF PF+QADSSTSR Y
Sbjct: 578 IADKEYGLDSSRETMAACESSEQVTLRVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNY 637
Query: 865 GGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE 924
GGTGIGLSIS+CLVELMGG+I F+S P GSTFSFT +++S+ K + S
Sbjct: 638 GGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVCGAFKKSSVTDKKENLEDLPSN 697
Query: 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCS-TSVLPQLALVL 983
FRG++ +V+D K +RA VTRYHL+RL + V VANS+ A + T S TS + Q +++
Sbjct: 698 FRGMKVIVVDGKPVRASVTRYHLKRLGILVKVANSISKAVALCGKTGSLTSGMFQPDIIM 757
Query: 984 IDKDVW-DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-T 1041
++KD W E G+ + KQ R +PK+ LLAT+I + D+ K+ G T
Sbjct: 758 VEKDTWISGEDGIF--NIWKQNGRM------FKMPKMILLATNIISAEFDKAKATGFTDT 809
Query: 1042 LLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS--LGHLLKGKQILVVDDNMVNRRVAEG 1099
++ KPLR S++ C Q+ K+ Q + P+ L LL GK+ILVVDDN VNRRVA G
Sbjct: 810 VIMKPLRASMVAACLQQVLGMGKRRQLGKDMPNGFLHSLLYGKKILVVDDNGVNRRVAAG 869
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
ALKK GA V C + G+AA++ L PHNFDACFMD+QMPEMDGF+AT +IR +E++ NE++
Sbjct: 870 ALKKFGADVKCAESGKAALEMLQLPHNFDACFMDIQMPEMDGFEATSRIRMMESKANEEM 929
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+G WHVPILAMTADVI A+ ++CMKCGMD YVSKPFE+E LY VA+F
Sbjct: 930 NNGNE----------WHVPILAMTADVIHATYDKCMKCGMDGYVSKPFEEENLYQEVAKF 979
Query: 1220 FMS 1222
F S
Sbjct: 980 FKS 982
>gi|449445312|ref|XP_004140417.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
Length = 1004
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/986 (54%), Positives = 691/986 (70%), Gaps = 53/986 (5%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W K L+++VLL IS+ ++ + +RRKE L SMCD+RARMLQDQF+VS+NHVHA
Sbjct: 35 WLPKFLLLWVLLVAFISMLIYKGMDADNKVRRKEVLGSMCDQRARMLQDQFSVSVNHVHA 94
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
LAIL+STFH+ K+ SA+DQ+TF EYT RTAFERPL SGVA+A +V+H ERE+FEKQHGW
Sbjct: 95 LAILISTFHYSKNVSAIDQETFAEYTARTAFERPLLSGVAFAQRVVHFEREKFEKQHGWT 154
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
IK ME E P+P++DEYAPVIFSQETVS+I S+DMMSG+EDRENILR+
Sbjct: 155 IKTMERE--------------PSPIKDEYAPVIFSQETVSYIESLDMMSGEEDRENILRS 200
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
R +GK VLT PF+LL S+HLGVVLT VY T LP + T ++R AT GYLG ++DV SLV
Sbjct: 201 RETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPLNPTMDERTRATAGYLGGAFDVESLV 260
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLDFGDPSRKHEMHC 561
E LL QLA Q I+VNVYD TN S P+ MYG D L S LDFGDP RKH+M C
Sbjct: 261 ENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLSHESKLDFGDPFRKHQMIC 320
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R+ QK P WTA+ + VI LLVG+I + A I +VE+D+HEM ELK RAEAAD+A
Sbjct: 321 RYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADIA 380
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNG+LGML +L+DTEL + Q DYAQTA GK LI+LIN+VLD+A
Sbjct: 381 KSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALIALINEVLDRA 440
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+LE E VPF L +LD+VLSLFS K+ KG+ELA++VSD+VPE+V+GDPGRFRQ+
Sbjct: 441 KIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQV 500
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK--VLEKSLNSVQHKSDKVYNTLS 799
ITNLVGNS+KFT+ GHIFV V LA+ ++K + V S + H + + TLS
Sbjct: 501 ITNLVGNSVKFTE-HGHIFVKVQLAEQSMVSTNIKSETHVNGNSEDGASHNKHQ-FETLS 558
Query: 800 GFPVVDRWKSWENFKMLDN-------------TNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
GF D SW+ FK L N TN + + + ++++VEDTG+GIPL AQ
Sbjct: 559 GFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNEISDI--VTVMISVEDTGIGIPLSAQ 616
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F FMQADSSTSR YGGTGIGL IS+CLVELMGG+I FVS+P GSTFSFT F
Sbjct: 617 GRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKPQVGSTFSFTAVFGRC 676
Query: 907 ERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
E+ +++ K S FRGL+A+V+D K +RA VT+YHL+RL + V VA+S+++A +
Sbjct: 677 EKKATVNIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILVEVASSVKMAAA 736
Query: 966 YLSDTCS--TSVLPQLALVLIDKDVW--DKEIGL--VLHYMLKQQRRKGGLEISRNLPKI 1019
S +S + Q ++L++KD++ ++E G +LH + +Q + LPK+
Sbjct: 737 LWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQLDWKQNGH-----TLKLPKL 791
Query: 1020 FLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL 1078
LLAT +S + D+ K G TL+ KPLR S++ C Q+ S KK Q + + +
Sbjct: 792 ILLATCMSTVEFDKAKEMGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDMANGSNF 851
Query: 1079 LK----GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
LK GK+ILVVDDN VNRRVA GALKK GA V CV+ G+AA+ L PH+FDACFMD+
Sbjct: 852 LKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALALLQLPHSFDACFMDI 911
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMPEMDGF+AT +IR +E++ NE + ES+ + WHVPILAMTADVI A+ ++C
Sbjct: 912 QMPEMDGFEATRRIRMMESKENEVLIR-ESNGKENARKDEWHVPILAMTADVIHATYDEC 970
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFF 1220
+KCGMD YVSKPFE+E LY AVA+FF
Sbjct: 971 LKCGMDGYVSKPFEEENLYQAVAKFF 996
>gi|89892466|gb|ABD79028.1| histidine kinase SHK278 [Striga asiatica]
Length = 1002
Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/977 (54%), Positives = 677/977 (69%), Gaps = 73/977 (7%)
Query: 259 RSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSM 318
R W K L+ ++ +GI +S+ FW + + + +RKETLASMCDERARMLQDQFNVSM
Sbjct: 79 REKNNWWRKFLIGWLAMGIIVSLSAFWYMSSQANEKRKETLASMCDERARMLQDQFNVSM 138
Query: 319 NHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEK 378
NH+ A+++++S FHH K+PSA+DQ TF YTERT+FERPLTSGVAYA++VLHSEREQFE
Sbjct: 139 NHIQAMSVMISIFHHGKNPSAIDQSTFARYTERTSFERPLTSGVAYAVRVLHSEREQFEA 198
Query: 379 QHGWKIKKMETEDQTLVQD--CTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKED 436
Q GW IK+M+ ++ V D +L+P+ VQ+EYAPVIF+QETV+H++S+DM+SGKED
Sbjct: 199 QQGWTIKRMDKIEKNPVHDDKYNQADLEPSLVQEEYAPVIFAQETVAHVISVDMLSGKED 258
Query: 437 RENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGAS 496
REN+LRAR SGKGVLT PF+LLK+N LGV+LTFAVY +LP DA RI+ T G
Sbjct: 259 RENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRELPPDAKLSDRIQETAGV---- 314
Query: 497 YDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRK 556
+ E LHQLASKQTI+VNVYD TN++ PI+MYG + + GL RVS+L+FGDP RK
Sbjct: 315 ----ACGENSLHQLASKQTILVNVYDMTNSTDPISMYGSNPSSDGLHRVSSLNFGDPFRK 370
Query: 557 HEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAE 616
HEMHCRFKQK P P AI S+G++VI +LV I +A +NRIA+VE+DYH+MMELK RAE
Sbjct: 371 HEMHCRFKQKQPWPLAAIFTSVGILVIDMLVAQIIYATVNRIAKVEDDYHQMMELKRRAE 430
Query: 617 AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIND 676
AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT LD Q DY +TA SGK L+SLIN+
Sbjct: 431 AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTRLDETQQDYVRTARESGKALVSLINE 490
Query: 677 VLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPG 736
VLDQAKIESG+LE E V F L +LD+VLSLFS K+ K +ELA+YVS +VP +IGDPG
Sbjct: 491 VLDQAKIESGKLELEAVSFDLRAILDDVLSLFSGKSQDKKVELAVYVSSKVPSTLIGDPG 550
Query: 737 RFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYN 796
RFRQI+TNLVGNSIKFT DKGHIFV+V+L ++ V + +
Sbjct: 551 RFRQIVTNLVGNSIKFT-DKGHIFVTVYLVEE------------------VMETEAETGS 591
Query: 797 TLSGFPVVDRWKSWENFKMLDNTNTMEQLG----RIKLLVTVEDTGVGIPLEAQVRIFTP 852
+LSG PVVDR +SW F++ N G ++ ++V+VEDTG GIP+EAQ R+F P
Sbjct: 592 SLSGLPVVDRRRSWSRFRVFSQDNNTPLAGSSPDQVNVMVSVEDTGQGIPVEAQSRVFNP 651
Query: 853 FMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLD 912
FMQ S +RT+GGTGIGLSIS+CLV+LM GEIG S P GSTF+FT FT ++
Sbjct: 652 FMQVGPSITRTHGGTGIGLSISKCLVQLMKGEIGLASTPQVGSTFTFTAVFTAEQQQQ-- 709
Query: 913 PKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCS 972
QQ P+ SEF G RAL++D +RA+V+RYH+QRL + V V +
Sbjct: 710 ---QQQQPNSSEFHGTRALLVDSNPVRAKVSRYHIQRLGIQVEVVPEVGPGLKK------ 760
Query: 973 TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
+ +V +++++W++ + ++ KG + PKI +L+ S
Sbjct: 761 ----KPVQIVFVEEEMWERNV---------EELGKGSWQ-----PKILILSNSPGIGPPP 802
Query: 1033 ELKSDGIVTLLTKPLRLSVLIGCFQ------EDPESSKKLQQKRKKPSLGHLLKGKQILV 1086
++ KPLR+S++ Q ++ L K K SL LL+G++ILV
Sbjct: 803 VPAV----AVVVKPLRVSMVGATLQRAMGGLRGNRGTQDLLHK-KLSSLSGLLQGRRILV 857
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
VDDN VN RVA G LKK+GA V + G+ A+ LTPPH F ACFMD+QMPEMDGF+AT
Sbjct: 858 VDDNRVNLRVAAGCLKKYGADVVHAERGKEAISLLTPPHLFHACFMDIQMPEMDGFEATR 917
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
+IR +E+ IN+ I G S E +GNV WHVPILAMTADVIQA++E+C KCGMD YVSKP
Sbjct: 918 RIRDIESGINKGIEDGRLSLESYGNVSNWHVPILAMTADVIQATSEECSKCGMDGYVSKP 977
Query: 1207 FEDEQLYTAVARFFMSG 1223
FE +QLY V+RFF +G
Sbjct: 978 FEADQLYREVSRFFHTG 994
Score = 43.1 bits (100), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 46 WLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMS--CEKKAQIFLQHSNVSHNQLHALATL 103
+L+G++ +G I L + + NE+ + ++ C+++A++ NVS N + A++ +
Sbjct: 88 FLIGWLAMGIIVSLSAFWYMSSQANEKRKETLASMCDERARMLQDQFNVSMNHIQAMSVM 147
Query: 104 F---------SESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDV 154
S DQ + T L +G+ A++V +S++++F+ Q W + +
Sbjct: 148 ISIFHHGKNPSAIDQSTFARYTERTSFERPLTSGVAYAVRVLHSEREQFEAQQGWTIKRM 207
Query: 155 KQMDQCPVED 164
++++ PV D
Sbjct: 208 DKIEKNPVHD 217
>gi|125528916|gb|EAY77030.1| hypothetical protein OsI_04985 [Oryza sativa Indica Group]
Length = 1023
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/957 (55%), Positives = 674/957 (70%), Gaps = 51/957 (5%)
Query: 280 SVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSA 339
S +LF + + +R+++LASMCDERARMLQDQFNVSMNH+ ALAILVSTFHH K PSA
Sbjct: 95 SFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKTPSA 154
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCT 399
+DQ TF Y ERTAFERPLTSGVAYA++V H EREQFE+Q GW IKKM +
Sbjct: 155 IDQMTFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPG 214
Query: 400 PENLDPAPVQ-----DEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPP 454
P D A + +EYAPVIF+Q+ H++S DM+SG EDR+NILRAR SGKGVLT P
Sbjct: 215 PGPGDAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAP 274
Query: 455 FKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQ 514
FKLL +N LGV+LT+ VY +LP A P +RI+A +GYLG +D+ +LVEKLL QLAS++
Sbjct: 275 FKLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQE 333
Query: 515 TIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAI 574
+I+VNVYDTTN S PI+MYG D T +G+ VS L+FGDPSRKHEMHCRF++KPP PW AI
Sbjct: 334 SIMVNVYDTTNES-PISMYGDD-TGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAI 391
Query: 575 NASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIR 634
+S G +VI LL GHIF A ++RIA+VE+D+H+M ELK RAE ADVAKSQFLATVSHEIR
Sbjct: 392 TSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHEIR 451
Query: 635 TPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVP 694
TPMNGVLGMLQMLMDT+LD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE E VP
Sbjct: 452 TPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELETVP 511
Query: 695 FHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQ 754
F L V D++LSLF KA +KG+ELA+YVSD+VP+++IGDPGR RQIITNLVGNSIKFT+
Sbjct: 512 FDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTE 571
Query: 755 DKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFK 814
+GHI+++VH+ ++V S ++V+ + + NTLSG+PV +R +SWE+ +
Sbjct: 572 -RGHIYLTVHVVEEVMSCLEVETGI-------------QNTNTLSGYPVANRRRSWESIR 617
Query: 815 MLDNT-NTMEQ------LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGT 867
+ + ++ E+ I L+++VEDTGVGIP EAQ R+FTPFMQ S +R +GGT
Sbjct: 618 LFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGT 677
Query: 868 GIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927
GIGLSIS+CLV LM GEIGF S+P GSTF+FT D K SEF+G
Sbjct: 678 GIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIK-------SSEFKG 730
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
+ ALV+D + +RA+VT+YHLQRL + + + S L+ T+ LVLIDK+
Sbjct: 731 INALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTA-----KLVLIDKE 785
Query: 988 VWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE-TDRDELKSDGIVTLLTKP 1046
W KE +L + R S PK+FLL +S S + + + ++ KP
Sbjct: 786 TWLKESHCT--PLLVNKLRNNDKPDS---PKLFLLGSSASSPKGGSDTSREHNLNVIMKP 840
Query: 1047 LRLSVLIGCFQEDPESSKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKK 1103
LR S+L + K+ + +LG LL KQI+VVDDN+VN +VA GALKK
Sbjct: 841 LRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKK 900
Query: 1104 HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163
+GA VTC D G+ A+ L PPHNFDACFMD+QMPEMDGF+AT +IR +E ++NE+I GE
Sbjct: 901 YGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGE 960
Query: 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ E ++ W PILAMTADVIQA++E+C+K MD YVSKPFE EQLY+ VARFF
Sbjct: 961 APPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFF 1016
>gi|118790678|tpd|FAA00248.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 1023
Score = 1019 bits (2635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/957 (55%), Positives = 673/957 (70%), Gaps = 51/957 (5%)
Query: 280 SVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSA 339
S +LF + + +R+++LASMCDERARMLQDQFNVSMNH+ ALAILVSTFHH K PSA
Sbjct: 95 SFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKTPSA 154
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCT 399
+DQ TF Y ERTAFERPLTSGVAYA++V H EREQFE+Q GW IKKM +
Sbjct: 155 IDQMTFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPG 214
Query: 400 PENLDPAPVQ-----DEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPP 454
P D A + +EYAPVIF+Q+ H++S DM+SG EDR+NILRAR SGKGVLT P
Sbjct: 215 PGPGDAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAP 274
Query: 455 FKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQ 514
FKLL +N LGV+LT+ VY +LP A P +RI+A +GYLG +D+ +LVEKLL QLAS++
Sbjct: 275 FKLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQE 333
Query: 515 TIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAI 574
+I+VNVYDTTN S PI+MYG D T +G+ VS L+FGDPSRKHEMHCRF++KPP PW AI
Sbjct: 334 SIMVNVYDTTNES-PISMYGDD-TGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAI 391
Query: 575 NASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIR 634
+S G +VI LL GHIF A ++RIA+VE+D+H+M ELK RAE ADVAKSQFLATVSHEIR
Sbjct: 392 TSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHEIR 451
Query: 635 TPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVP 694
TPMNGVLGMLQMLMDT+LD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE E VP
Sbjct: 452 TPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELETVP 511
Query: 695 FHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQ 754
F L V D++LSLF KA +KG+ELA+YVSD+VP+++IGDPGR RQIITNLVGNSIKFT+
Sbjct: 512 FDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTE 571
Query: 755 DKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFK 814
+GHI+++VH+ ++V S ++V+ + + NTLSG+PV +R SWE+ +
Sbjct: 572 -RGHIYLTVHVVEEVMSCLEVETGI-------------QNTNTLSGYPVANRRCSWESIR 617
Query: 815 MLDNT-NTMEQ------LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGT 867
+ + ++ E+ I L+++VEDTGVGIP EAQ R+FTPFMQ S +R +GGT
Sbjct: 618 LFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGT 677
Query: 868 GIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927
GIGLSIS+CLV LM GEIGF S+P GSTF+FT D K SEF+G
Sbjct: 678 GIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIK-------SSEFKG 730
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
+ ALV+D + +RA+VT+YHLQRL + + + S L+ T+ LVLIDK+
Sbjct: 731 INALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTA-----KLVLIDKE 785
Query: 988 VWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE-TDRDELKSDGIVTLLTKP 1046
W KE +L + R S PK+FLL +S S + + + ++ KP
Sbjct: 786 TWLKESHCT--PLLVNKLRNNDKPDS---PKLFLLGSSASSPKGGSDTSREHNLNVIMKP 840
Query: 1047 LRLSVLIGCFQEDPESSKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKK 1103
LR S+L + K+ + +LG LL KQI+VVDDN+VN +VA GALKK
Sbjct: 841 LRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKK 900
Query: 1104 HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163
+GA VTC D G+ A+ L PPHNFDACFMD+QMPEMDGF+AT +IR +E ++NE+I GE
Sbjct: 901 YGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGE 960
Query: 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ E ++ W PILAMTADVIQA++E+C+K MD YVSKPFE EQLY+ VARFF
Sbjct: 961 APPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFF 1016
>gi|413951477|gb|AFW84126.1| putative histidine kinase family protein [Zea mays]
Length = 1007
Score = 1019 bits (2634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/977 (54%), Positives = 686/977 (70%), Gaps = 54/977 (5%)
Query: 259 RSAGKWRMKILVVF-VLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVS 317
R + W + + V+F VLL I +W+ + +R+E+LASMCDERARMLQDQFNVS
Sbjct: 63 RDSSSWLIPLWVLFWVLLASVICLWM----SNQAVAKRRESLASMCDERARMLQDQFNVS 118
Query: 318 MNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFE 377
+NH+ ALAILVSTFHH K PSA+DQ TF Y ERTAFERPLTSGVAY ++V H+EREQFE
Sbjct: 119 VNHLQALAILVSTFHHSKTPSAIDQTTFARYAERTAFERPLTSGVAYGVRVTHAEREQFE 178
Query: 378 KQHGWKIKKMETEDQTLVQDCTPENLDPAPVQD---EYAPVIFSQETVSHIVSIDMMSGK 434
+Q GW IKKM + +T Q P N + A V++ EYAPVIF+Q+ H++S D++SG
Sbjct: 179 RQQGWSIKKMYS-SKTKKQSQGPGNAEDAEVREPAEEYAPVIFAQDAYKHVISFDLLSGA 237
Query: 435 EDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLG 494
+DR+N+LRAR SGKGVLT PFKLL +N LGV+ T+AVY +LP +A P++RI+A +GYLG
Sbjct: 238 DDRDNVLRARESGKGVLTAPFKLL-NNRLGVISTYAVYKYELPPNARPQERIQAAIGYLG 296
Query: 495 ASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPS 554
+D+ +LV+KLLHQLA KQ+I+VNVYDTTN I+MYG + T +G+ +VS L+FGDPS
Sbjct: 297 GIFDIEALVDKLLHQLAGKQSIMVNVYDTTN-DRRISMYGSNDTGSGMCQVSTLNFGDPS 355
Query: 555 RKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKAR 614
RKHEMHCRF Q PP PW AI SIG +VI LL+G+I +A RIA+VE+D+ EM LK R
Sbjct: 356 RKHEMHCRFIQSPPWPWMAITTSIGTLVIALLIGYIIYATAKRIARVEDDFQEMSVLKKR 415
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE AD+AKSQFLATVSHEIRTPMNGVLGMLQMLMDT+LD Q DY +TA SGK L+SLI
Sbjct: 416 AEDADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLI 475
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
N+VLDQAKIESG+LE E VPF L V D++LSLF KA +KG+ELA++VSD+VP+ +IGD
Sbjct: 476 NEVLDQAKIESGKLELEAVPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVPQALIGD 535
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
PGR RQIITNLVGNSIKFT+ KGHI+++VH+ +++ + ++V+ +
Sbjct: 536 PGRIRQIITNLVGNSIKFTE-KGHIYLTVHVVEEIMNCLEVE-------------TGTQS 581
Query: 795 YNTLSGFPVVDRWKSWENFKMLD---NTNTME----QLGRIKLLVTVEDTGVGIPLEAQV 847
NTLSG+PV +R +SWENF++ N++ M I L+++VEDTGVGIP +AQ
Sbjct: 582 ANTLSGYPVANRKRSWENFRVFSRELNSSEMPFAPIASDSISLIISVEDTGVGIPFDAQS 641
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R+FTPFMQ S +R +GGTGIGLSIS+CLV LM GEIGF S+P GSTF+FT T
Sbjct: 642 RVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEIGFASKPQVGSTFTFTAVLTRAH 701
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
+ + K SEF+G+ ALV+D + +RA+VTRYHLQRL + + + S +
Sbjct: 702 SSRNENK-------SSEFKGINALVVDHRPVRAKVTRYHLQRLGVQTELTTDLDQYISKI 754
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+ C + + LVLIDK+ W KE + ++ + R K + + K+FLL S
Sbjct: 755 N--CGSQI---AKLVLIDKETWLKE-SHSMPLLVTKLRNKDQPDST----KLFLLENPKS 804
Query: 1028 ETDRDE-LKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKR---KKPSLGHLLKGKQ 1083
+ + + + ++ KPLR S+L KL + +LG LL K+
Sbjct: 805 TAKSNSHIFREFNLNVIMKPLRASMLQVSLHRALGGIDKLHCRNGVLGNSTLGSLLHKKR 864
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
ILVVDDN+VN +VA GALKK+GA VTC D G+ A+ +L PPH+FDACFMD+QMPEMDGF+
Sbjct: 865 ILVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITQLKPPHSFDACFMDIQMPEMDGFE 924
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT +IR +E ++NEQI GE+ E G + W PILAMTADVIQA++EQC+K MD YV
Sbjct: 925 ATKRIRVMERDLNEQIERGEAPPECAG-LRQWRTPILAMTADVIQATHEQCLKSEMDGYV 983
Query: 1204 SKPFEDEQLYTAVARFF 1220
SKPFE EQLY VARFF
Sbjct: 984 SKPFEGEQLYREVARFF 1000
Score = 43.5 bits (101), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 20/145 (13%)
Query: 40 STLAFLWLLGFVIVGS-ICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLH 98
S L LW+L +V++ S IC +S V E C+++A++ NVS N L
Sbjct: 67 SWLIPLWVLFWVLLASVICLWMSNQA---VAKRRESLASMCDERARMLQDQFNVSVNHLQ 123
Query: 99 ALATLF---------SESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIW 149
ALA L S DQ + L +G+ ++V ++++++F++Q W
Sbjct: 124 ALAILVSTFHHSKTPSAIDQTTFARYAERTAFERPLTSGVAYGVRVTHAEREQFERQQGW 183
Query: 150 -----LAEDVKQMDQCP--VEDVNV 167
+ K+ Q P ED V
Sbjct: 184 SIKKMYSSKTKKQSQGPGNAEDAEV 208
>gi|113911568|gb|ABI48270.1| histidine kinase 2 [Lotus japonicus]
Length = 996
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/994 (54%), Positives = 689/994 (69%), Gaps = 67/994 (6%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W L ++VLL IS ++ + + +RRKE L S+CD+RARMLQDQF+VS+NHVHA
Sbjct: 29 WLPWFLFMWVLLMAFISWNIYSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHA 88
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
LAILVSTFH+ ++PSA+D++TF EYT RTAFERPL SGVAYA +V++SERE+FEKQHGW
Sbjct: 89 LAILVSTFHYYRNPSAIDEETFAEYTARTAFERPLLSGVAYAQRVINSERERFEKQHGWV 148
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
IK ME E + V+DEYAPVIF+QETVS++ S+DMMSG+ED+ENILRA
Sbjct: 149 IKTMERES--------------SQVRDEYAPVIFAQETVSYLESLDMMSGEEDQENILRA 194
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
RA+GK VLT PF+LL S+HLGVVLTF VY + LP T E+RIEAT GY+G S+DV SLV
Sbjct: 195 RATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTLEERIEATAGYVGGSFDVESLV 254
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYG--PDVTDTGLLRVSNLDFGDPSRKHEMHC 561
E LL QLA Q I+VNVYD TN S P+ MYG + D L S LDFGDP R H+M C
Sbjct: 255 ENLLGQLAGNQAILVNVYDITNCSNPLTMYGNHSEEADMSLSYESKLDFGDPYRIHQMIC 314
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R+ QK P W A+ ++ VI +LVG+I + A N I +VE+D+HEM +LK RAEAADVA
Sbjct: 315 RYHQKEPTNWVALTTAVLFFVILILVGYILYEAGNHIVKVEDDFHEMQDLKVRAEAADVA 374
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNG+LGM+ +L+DTEL + Q DYAQTA GK LI+LIN+VLD+A
Sbjct: 375 KSQFLATVSHEIRTPMNGILGMMALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRA 434
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+LE E VPF L +LD+VLSLFS K+ K +ELA++VSD+VP++++GDPGRFRQI
Sbjct: 435 KIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKSLELAVFVSDKVPDILMGDPGRFRQI 494
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK-DKVLEKSLNSVQHKS-DKVYNTLS 799
ITNLVGNS+KFT+ +GHIFV VHL D++ ++ K + +L + V H S D + TLS
Sbjct: 495 ITNLVGNSVKFTE-QGHIFVKVHLEDNINPVMNGKHETILNGESDEVFHLSGDCHFKTLS 553
Query: 800 GFPVVDRWKSWENFKML--------DNTNTM----EQLGRIKLLVTVEDTGVGIPLEAQV 847
G VD SWENFK L D ++ M E ++KL V VEDTG GIP AQ
Sbjct: 554 GCEAVDEQNSWENFKHLIANEERYFDCSSKMAATSESSEQVKLRVCVEDTGTGIPFSAQD 613
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
IF PF+QADSSTSR YGGTGIGLSIS+CLVELMGG+I F S P GSTFSFT F +
Sbjct: 614 TIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFTSRPQVGSTFSFTAAFGMFK 673
Query: 908 RNSLDPKWQQYVPDV-SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+NS+ + + D+ S FRGL+ +V+D K +RA VTRY L+RL + V VANS+ A +
Sbjct: 674 KNSVSDMKKLNLEDLPSSFRGLKVIVVDGKPVRAAVTRYLLKRLGILVKVANSISQAVAL 733
Query: 967 LSDTCS-TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR----------N 1015
S TS + Q +++++KD W GG I +
Sbjct: 734 CGKNGSLTSGMFQPDIIMVEKDTW-------------ISGEHGGFNIWKLDFKQNGHVFK 780
Query: 1016 LPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRK--- 1071
+PK+ LLAT+I T+ D+ K+ G T++ KPLR S++ C Q+ KK Q +
Sbjct: 781 MPKMILLATNIKNTEFDQAKATGFTDTVIMKPLRSSMVAACLQQVLGIGKKRQLGQDMLN 840
Query: 1072 -KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
L LL GK+ILVVDDN+VNRRVA GALKK GA V CV+ G+AA++ L PH FDAC
Sbjct: 841 GSSFLQSLLYGKKILVVDDNVVNRRVAAGALKKFGADVKCVESGKAALEMLQLPHCFDAC 900
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNV--GLWHVPILAMTADVIQ 1188
FMD+QMPEMDGF+AT +IR +E + NEQ+ +GE GN WHVPILAMTADVI
Sbjct: 901 FMDIQMPEMDGFEATSKIRMMERKANEQV-NGELGE---GNTRKSEWHVPILAMTADVIH 956
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
A+ ++C+KCGMD YVSKPFE+++LY VA+FF S
Sbjct: 957 ATYDKCLKCGMDGYVSKPFEEQKLYQEVAKFFKS 990
>gi|162461092|ref|NP_001104866.1| histidine kinase2 [Zea mays]
gi|38347686|dbj|BAD01584.1| histidine kinase 2 [Zea mays]
Length = 1007
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/949 (55%), Positives = 674/949 (71%), Gaps = 61/949 (6%)
Query: 294 RRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTA 353
+R+E+LASMCDERARMLQDQFNVSMNH+ ALAILVSTFHH K PSA+DQKTF Y ERTA
Sbjct: 95 KRRESLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKTPSAIDQKTFARYAERTA 154
Query: 354 FERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQD--- 410
FERPLTSGVAY ++V H+EREQFE+Q GW IKKM + +T Q P N + A V++
Sbjct: 155 FERPLTSGVAYGVRVTHAEREQFERQQGWSIKKMYS-SKTKNQSQGPGNAEDAEVREPAE 213
Query: 411 EYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFA 470
EYAPVIF+Q+ H++S D++SG +DR+N+LRAR SGKGVLT PFKLL +N LGV+ T+A
Sbjct: 214 EYAPVIFAQDAYKHVISFDLLSGADDRDNVLRARESGKGVLTAPFKLL-NNRLGVIFTYA 272
Query: 471 VYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPI 530
VY +LP +A P++RI+A +GYLG +D+ +LV+KLLHQLA KQ+I+VNVYDTTN PI
Sbjct: 273 VYKYELPANARPQERIQAAIGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTN-ERPI 331
Query: 531 NMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHI 590
+MYG + T +G+ +VS L+FGDPSRKH MHCRF Q PP PW AI SIG +VI LL+G+I
Sbjct: 332 SMYGSNDTGSGMCQVSTLNFGDPSRKHVMHCRFIQSPPWPWMAITTSIGTLVIALLIGYI 391
Query: 591 FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
HA RIA+VE+D+ EM LK RAE AD+AKSQFLATVSHEIRTPMNGVLGMLQMLMDT
Sbjct: 392 VHATAKRIARVEDDFQEMSLLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 451
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
+LD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE E VPF L V D++LSLF
Sbjct: 452 DLDTTQQDYVRTAQASGKTLVSLINEVLDQAKIESGKLELEVVPFDLRTVCDDILSLFCG 511
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
KA +KG+ELA++VSD+VP+ +IGDPGR RQIITNLVGNSIKFT+ KGHI+++VH+ +++
Sbjct: 512 KAQEKGLELAVFVSDQVPQTLIGDPGRIRQIITNLVGNSIKFTE-KGHIYLTVHVVEEIM 570
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLD---NTNTME---- 823
++V+ + + NTLSG+PV +R +SWENF++ N++ M
Sbjct: 571 HCLEVETGI-------------QYTNTLSGYPVANRKRSWENFRLFSRELNSSEMPFAPI 617
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
I L+++VEDTG GIP +AQ R+FTPFMQ S +R +GGTGIGLSIS+CLV LM G
Sbjct: 618 ASDSISLMISVEDTGAGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKG 677
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
EIGF S+P GSTF+FT T + + K SEF+ + ALV+D + +RA+VT
Sbjct: 678 EIGFASKPQVGSTFTFTAVLTRVHSSRNENK-------SSEFKEINALVVDHRPVRAKVT 730
Query: 944 RYHLQRLEMAVHVANSMQLACSYLS-DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLK 1002
+YHLQRL + + + Y+S + C + + LVLIDK+ W KE + ++
Sbjct: 731 KYHLQRLGVQTELTTDLD---QYISKNNCGSQI---AKLVLIDKETWLKE-SHSMPLLVT 783
Query: 1003 QQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV------TLLTKPLRLSVLIGCF 1056
+ R K + + K+FLL E + +KS+ + ++ KPLR S+L
Sbjct: 784 KLRNKDQPDST----KLFLL-----ENPKSSVKSNSHIFREYNLNVIMKPLRASMLQVSL 834
Query: 1057 QEDPESSKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDC 1113
Q KL + +LG LL K+I+VVDDN+VN +VA GALKK+GA VTC D
Sbjct: 835 QRALGGIDKLHCRNGVVGNSTLGSLLHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADS 894
Query: 1114 GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVG 1173
G+ A+ L PPHNFDACFMD+QMPEMDGF+AT +IR +E ++NEQI GE+ E G V
Sbjct: 895 GKEAITLLKPPHNFDACFMDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPECVG-VR 953
Query: 1174 LWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
W PILAMTADVIQA++EQC+K MD YVSKPFE EQLY VARFF++
Sbjct: 954 QWRTPILAMTADVIQATHEQCLKSEMDGYVSKPFEGEQLYREVARFFLN 1002
Score = 46.6 bits (109), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 45 LWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLF 104
LW+ +V+V S+ +L C VG E C+++A++ NVS N L ALA L
Sbjct: 72 LWVSSWVLVASLIYL--CMSYQAVGKRRESLASMCDERARMLQDQFNVSMNHLQALAILV 129
Query: 105 ---------SESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIW 149
S DQ + L +G+ ++V ++++++F++Q W
Sbjct: 130 STFHHSKTPSAIDQKTFARYAERTAFERPLTSGVAYGVRVTHAEREQFERQQGW 183
>gi|82466315|gb|ABB76249.1| hybrid type histidine kinase isoform a [Oryza sativa Indica Group]
Length = 1023
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/957 (55%), Positives = 674/957 (70%), Gaps = 51/957 (5%)
Query: 280 SVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSA 339
S +LF + + +R+++LASMCDERARMLQDQFNVSMNH+ ALAILVSTFHH K PSA
Sbjct: 95 SFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKTPSA 154
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCT 399
+DQ TF Y ERTAFERPLTSGVAYA++V H E+EQFE+Q GW IKKM +
Sbjct: 155 IDQMTFARYAERTAFERPLTSGVAYAVRVTHGEQEQFERQQGWAIKKMYSSSNKKQSSPG 214
Query: 400 PENLDPAPVQ-----DEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPP 454
P D A + +EYAPVIF+Q+ H++S DM+SG EDR+NILRAR SGKGVLT P
Sbjct: 215 PGPGDAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAP 274
Query: 455 FKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQ 514
FKLL +N LGV+LT+ VY +LP A P +RI+A +GYLG +D+ +LVEKLL QLAS++
Sbjct: 275 FKLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQE 333
Query: 515 TIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAI 574
+I+VNVYDTTN S PI+MYG D T +G+ VS L+FGDPSRKHEMHCRF++KPP PW AI
Sbjct: 334 SIMVNVYDTTNES-PISMYGDD-TGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAI 391
Query: 575 NASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIR 634
+S G +VI LL GHIF A ++RIA+VE+D+H+M ELK RAE ADVAKSQFLATVSHEIR
Sbjct: 392 TSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHEIR 451
Query: 635 TPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVP 694
TPMNGVLGMLQMLMDT+LD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE E VP
Sbjct: 452 TPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELETVP 511
Query: 695 FHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQ 754
F L V D++LSLF KA +KG+ELA+YVSD+VP+++IGDPGR RQIITNL+GNSIKFT+
Sbjct: 512 FDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRVRQIITNLIGNSIKFTE 571
Query: 755 DKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFK 814
+GHI+++VH+ ++V S ++V+ + + NTLSG+PV +R +SWE+ +
Sbjct: 572 -RGHIYLTVHVVEEVMSCLEVETGI-------------QNTNTLSGYPVANRRRSWESIR 617
Query: 815 MLDNT-NTMEQ------LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGT 867
+ + ++ E+ I L+++VEDTGVGIP EAQ R+FTPFMQ S +R +GGT
Sbjct: 618 LFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGT 677
Query: 868 GIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927
GIGLSIS+CLV LM GEIGF S+P GSTF+FT D K SEF+G
Sbjct: 678 GIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIK-------SSEFKG 730
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
+ ALV+D + +RA+VT+YHLQRL + + + S L+ T+ LVLIDK+
Sbjct: 731 INALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTA-----KLVLIDKE 785
Query: 988 VWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE-TDRDELKSDGIVTLLTKP 1046
W KE +L + R S PK+FLL +S S + + + ++ KP
Sbjct: 786 TWLKESHCT--PLLVNKLRNNDKPDS---PKLFLLGSSASSPKGGSDTSREHNLNVIMKP 840
Query: 1047 LRLSVLIGCFQEDPESSKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKK 1103
LR S+L + K+ + +LG LL KQI+VVDDN+VN +VA GALKK
Sbjct: 841 LRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKK 900
Query: 1104 HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163
+GA VTC D G+ A+ L PPHNFDACFMD+QMPEMDGF+AT +IR +E ++NE+I GE
Sbjct: 901 YGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGE 960
Query: 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ E ++ W PILAMTADVIQA++E+C+K MD YVSKPFE EQLY+ VARFF
Sbjct: 961 APPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFF 1016
>gi|222619783|gb|EEE55915.1| hypothetical protein OsJ_04593 [Oryza sativa Japonica Group]
Length = 1001
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/960 (55%), Positives = 675/960 (70%), Gaps = 57/960 (5%)
Query: 280 SVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSA 339
S +LF + + +R+++LASMCDERARMLQDQFNVSMNH+ ALAILVSTFHH K PSA
Sbjct: 73 SFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKTPSA 132
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCT 399
+DQ TF Y ERTAFERPLTSGVAYA++V H EREQFE+Q GW IKKM +
Sbjct: 133 IDQMTFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPG 192
Query: 400 PENLDPAPVQ-----DEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPP 454
P + A + +EYAPVIF+Q+ H++S DM+SG EDR+NILRAR SGKGVLT P
Sbjct: 193 PGPGEAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAP 252
Query: 455 FKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQ 514
FKLL +N LGV+LT+ VY +LP A P +RI+A +GYLG +D+ +LVEKLL QLAS++
Sbjct: 253 FKLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQE 311
Query: 515 TIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAI 574
+I+VNVYDTTN S PI+MYG D T +G+ VS L+FGDPSRKHEMHCRF++KPP PW AI
Sbjct: 312 SIMVNVYDTTNES-PISMYGDD-TGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAI 369
Query: 575 NASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIR 634
+S G +VI LL GHIF A ++RIA+VE+D+H+M ELK RAE ADVAKSQFLATVSHEIR
Sbjct: 370 TSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHEIR 429
Query: 635 TPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVP 694
TPMNGVLGMLQMLMDT+LD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE E VP
Sbjct: 430 TPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELETVP 489
Query: 695 FHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQ 754
F L V D++LSLF KA +KG+ELA+YVSD+VP+++IGDPGR RQIITNLVGNSIKFT+
Sbjct: 490 FDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTE 549
Query: 755 DKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFK 814
+GHI+++VH+ ++V S ++V+ + + NTLSG+PV +R SWE+ +
Sbjct: 550 -RGHIYLTVHVVEEVMSCLEVETGI-------------QNTNTLSGYPVANRRCSWESIR 595
Query: 815 MLDNT-NTMEQ------LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGT 867
+ + ++ E+ I L+++VEDTGVGIP EAQ R+FTPFMQ S +R +GGT
Sbjct: 596 LFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGT 655
Query: 868 GIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927
GIGLSIS+CLV LM GEIGF S+P GSTF+FT D K SEF+G
Sbjct: 656 GIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIK-------SSEFKG 708
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
+ ALV+D + +RA+VT+YHLQRL + + + S L+ T+ LVLIDK+
Sbjct: 709 INALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTA-----KLVLIDKE 763
Query: 988 VWDKE---IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE-TDRDELKSDGIVTLL 1043
W KE L+++ + + + PK+FLL +S S + + + ++
Sbjct: 764 TWLKESHCTPLLVNKLRNNDK--------PDSPKLFLLGSSASSPKGGSDTSREHNLNVI 815
Query: 1044 TKPLRLSVLIGCFQEDPESSKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGA 1100
KPLR S+L + K+ + +LG LL KQI+VVDDN+VN +VA GA
Sbjct: 816 MKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGA 875
Query: 1101 LKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160
LKK+GA VTC D G+ A+ L PPHNFDACFMD+QMPEMDGF+AT +IR +E ++NE+I
Sbjct: 876 LKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLNERIE 935
Query: 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
GE+ E ++ W PILAMTADVIQA++E+C+K MD YVSKPFE EQLY+ VARFF
Sbjct: 936 RGEAPPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFF 994
>gi|414878942|tpg|DAA56073.1| TPA: putative histidine kinase family protein [Zea mays]
Length = 1007
Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/949 (55%), Positives = 673/949 (70%), Gaps = 61/949 (6%)
Query: 294 RRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTA 353
+R+E+LASMCDERARMLQDQFNVSMNH+ ALAILVSTFHH K PSA+DQKTF Y ERTA
Sbjct: 95 KRRESLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKTPSAIDQKTFARYAERTA 154
Query: 354 FERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQD--- 410
FERPLTSGVAY ++V H+EREQFE+Q GW IKKM + +T Q P N + A V++
Sbjct: 155 FERPLTSGVAYGVRVTHAEREQFERQQGWSIKKMYS-SKTKNQSQGPGNAEDAEVREPAE 213
Query: 411 EYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFA 470
EYAPVIF+Q+ H++S D++SG +DR+N+LRAR SGKGVLT PFKLL +N LGV+ T+A
Sbjct: 214 EYAPVIFAQDAYKHVISFDLLSGADDRDNVLRARESGKGVLTAPFKLL-NNRLGVIFTYA 272
Query: 471 VYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPI 530
VY +LP +A P++RI+A +GYLG +D+ +LV+KLLHQLA KQ+I+VNVYDTTN PI
Sbjct: 273 VYKYELPANARPQERIQAAIGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTN-ERPI 331
Query: 531 NMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHI 590
+MYG + T +G+ +VS L+FGDPSRKH MHCRF Q PP PW AI SIG +VI LL+G+I
Sbjct: 332 SMYGSNDTGSGMCQVSTLNFGDPSRKHVMHCRFIQSPPWPWMAITTSIGTLVIALLIGYI 391
Query: 591 FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
HA RIA+VE+D+ EM LK RAE AD+AKSQFLATVSHEIRTPMNGVLGMLQMLMDT
Sbjct: 392 VHATAKRIARVEDDFQEMSLLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 451
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
+LD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE E VPF L V D++LSLF
Sbjct: 452 DLDTTQQDYVRTAQASGKTLVSLINEVLDQAKIESGKLELEVVPFDLRTVCDDILSLFCG 511
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
KA +KG+ELA++VSD+VP+ +IGDPGR RQIITNLVGNSIKFT+ KGHI+++VH+ +++
Sbjct: 512 KAQEKGLELAVFVSDQVPQTLIGDPGRIRQIITNLVGNSIKFTE-KGHIYLTVHVVEEIM 570
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLD---NTNTME---- 823
++V+ + NTLSG+PV +R +SWENF++ N++ M
Sbjct: 571 HCLEVE-------------TGTQYTNTLSGYPVANRKRSWENFRLFSRELNSSEMPFAPI 617
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
I L+++VEDTG GIP +AQ R+FTPFMQ S +R +GGTGIGLSIS+CLV LM G
Sbjct: 618 ASDSISLMISVEDTGAGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKG 677
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
EIGF S+P GSTF+FT T + + K SEF+ + ALV+D + +RA+VT
Sbjct: 678 EIGFSSKPQVGSTFTFTAVLTRVHSSRNENK-------SSEFKEINALVVDHRPVRAKVT 730
Query: 944 RYHLQRLEMAVHVANSMQLACSYLS-DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLK 1002
+YHLQRL + + + Y+S + C + + LVLIDK+ W KE + ++
Sbjct: 731 KYHLQRLGVQTELTTDLD---QYISKNNCGSQI---AKLVLIDKETWLKE-SHSMPLLVT 783
Query: 1003 QQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV------TLLTKPLRLSVLIGCF 1056
+ R K + + K+FLL E + +KS+ + ++ KPLR S+L
Sbjct: 784 KLRNKDQPDST----KLFLL-----ENPKSSVKSNSHIFREYNLNVIMKPLRASMLQVSL 834
Query: 1057 QEDPESSKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDC 1113
Q KL + +LG LL K+I+VVDDN+VN +VA GALKK+GA VTC D
Sbjct: 835 QRALGGIDKLHCRNGVVGNSTLGSLLHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADS 894
Query: 1114 GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVG 1173
G+ A+ L PPHNFDACFMD+QMPEMDGF+AT +IR +E ++NEQI GE+ E G V
Sbjct: 895 GKEAITLLKPPHNFDACFMDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPPECVG-VR 953
Query: 1174 LWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
W PILAMTADVIQA++EQC+K MD YVSKPFE EQLY VARFF++
Sbjct: 954 QWRTPILAMTADVIQATHEQCLKSEMDGYVSKPFEGEQLYREVARFFLN 1002
Score = 46.6 bits (109), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 45 LWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLF 104
LW+ +V+V S+ +L C VG E C+++A++ NVS N L ALA L
Sbjct: 72 LWVSSWVLVASLIYL--CMSYQAVGKRRESLASMCDERARMLQDQFNVSMNHLQALAILV 129
Query: 105 ---------SESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIW 149
S DQ + L +G+ ++V ++++++F++Q W
Sbjct: 130 STFHHSKTPSAIDQKTFARYAERTAFERPLTSGVAYGVRVTHAEREQFERQQGW 183
>gi|356521173|ref|XP_003529232.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 987
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/963 (55%), Positives = 673/963 (69%), Gaps = 59/963 (6%)
Query: 285 WLLKEKM----HLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAV 340
W + KM +RRKE L S+CD+RARMLQDQF+VS+NHVHALAILVSTFH+ ++PSA+
Sbjct: 53 WCIYSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRYPSAI 112
Query: 341 DQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTP 400
DQ+TF EYT RTAFERPL SGVAYA +V++SERE+FEK+HGW IK ME +
Sbjct: 113 DQETFAEYTARTAFERPLLSGVAYAQRVVNSERERFEKEHGWVIKTMERKSSL------- 165
Query: 401 ENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKS 460
V+DEYAPVIF+QETVS++ S+DMMSG+EDRENILRARA+GK VLT PF LL S
Sbjct: 166 -------VRDEYAPVIFAQETVSYLESLDMMSGEEDRENILRARATGKAVLTSPFSLLGS 218
Query: 461 NHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNV 520
+HLGVVLTF VY + LPQ T E+RIEAT GY+G S+DV SLV+ LL QL Q I+VNV
Sbjct: 219 HHLGVVLTFPVYKSKLPQKPTVEERIEATAGYVGGSFDVESLVKNLLGQLDGNQAILVNV 278
Query: 521 YDTTNASAPINMYGP--DVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASI 578
YD TN + P+ MYG + D L+ S LDFGDP RKH+M CR+ QK P W A+ +
Sbjct: 279 YDITNYTNPLVMYGNLYEEGDMSLVHESKLDFGDPYRKHQMICRYHQKAPTNWIALTTAF 338
Query: 579 GVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMN 638
VI LVG+I + A N I +VE+D+H M ELK RAEAAD+AKSQFLATVSHEIRTPMN
Sbjct: 339 LFFVILFLVGYILYGAGNHIVKVEDDFHAMEELKVRAEAADIAKSQFLATVSHEIRTPMN 398
Query: 639 GVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698
G+LGML +L+DTEL + Q DYAQTA GK LI+LIN+VLD+AKIE+G+LE E VPF L
Sbjct: 399 GILGMLALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLR 458
Query: 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGH 758
++D+VLSLFS K+ KG+ELA++VSD+VP++V+GDPGRFRQIITNLVGNS+KFT+ +GH
Sbjct: 459 SIIDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTE-QGH 517
Query: 759 IFVSVHLADDVRSKVDVK-DKVLEKSLNSVQHKS-DKVYNTLSGFPVVDRWKSWENFKML 816
IFV VHLAD+ +S ++ K D L + V H S D + TLSG D SW+NFK L
Sbjct: 518 IFVKVHLADNRKSIMNGKHDTFLNGESDEVFHISGDYHFKTLSGCEAADERNSWDNFKHL 577
Query: 817 ---------DNTNTM---EQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTY 864
+ TM E ++ L V VEDTG+GIP AQ IF PF+QADSSTSR Y
Sbjct: 578 IADEEYGLDSSRETMAACESSEQVTLRVCVEDTGIGIPFSAQDGIFMPFVQADSSTSRNY 637
Query: 865 GGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE 924
GGTGIGLSIS+CLVELMGG+I F+S P GSTFSFT +++S+ K + S
Sbjct: 638 GGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVCEAFKKSSVTNKKKNLEDLPSS 697
Query: 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCS-TSVLPQLALVL 983
FRG++ +V+D K +RA VTRYHL+RL + V VAN + A + + S S + Q +++
Sbjct: 698 FRGMKVIVVDGKPVRAAVTRYHLKRLGILVKVANRISKAVALCGKSGSLKSGMFQPDIIM 757
Query: 984 IDKDVW-DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-T 1041
++KD W E G+ + + G I +PK+ LLAT+IS + D+ K G T
Sbjct: 758 VEKDTWITGEDGIFNTW------KHNGRTI--KMPKMILLATNISNAEFDKAKFTGFTDT 809
Query: 1042 LLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS--LGHLLKGKQILVVDDNMVNRRVAEG 1099
++ KPLR S++ C Q+ KK Q + P+ L LL GK+ILVVDDN VNRRVA G
Sbjct: 810 VIMKPLRASMVAACLQQVLGMGKKRQLGKDMPNGFLHSLLYGKKILVVDDNGVNRRVAAG 869
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
ALKK GA V C + G+ A++ L PHNFDACFMD+QMPEMDGF+AT +IR +E++ NE++
Sbjct: 870 ALKKFGADVKCAESGKVALEMLQLPHNFDACFMDIQMPEMDGFEATSRIRMMESKANEEM 929
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E WHVPILAMTADVI A+ ++C+KCGMD YVSKPFE+E LY VA+F
Sbjct: 930 NGSE-----------WHVPILAMTADVILATYDKCVKCGMDGYVSKPFEEENLYQEVAKF 978
Query: 1220 FMS 1222
F S
Sbjct: 979 FKS 981
>gi|242038337|ref|XP_002466563.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
gi|241920417|gb|EER93561.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
Length = 996
Score = 1013 bits (2618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/987 (54%), Positives = 685/987 (69%), Gaps = 51/987 (5%)
Query: 263 KWRMK------ILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNV 316
+W MK +++++L+ I V+L W ++ + +E L SMC+ERARMLQDQF V
Sbjct: 32 RWTMKEKLIAAAVLLWMLVAATIGVFLHWSIRHAALRKEEEGLVSMCEERARMLQDQFAV 91
Query: 317 SMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQF 376
S+NHVHALAILV+TFH+ KHP A+DQ TF EYT RT+FERPL SGVAYA +V H++RE F
Sbjct: 92 SVNHVHALAILVATFHYEKHPPALDQDTFAEYTARTSFERPLLSGVAYAQRVEHADREGF 151
Query: 377 EKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKED 436
E+Q GW IK M+ E P+PVQDEYAPV++SQETVS+I +DMMSG+ED
Sbjct: 152 ERQQGWIIKTMKHE--------------PSPVQDEYAPVVYSQETVSYIEGLDMMSGEED 197
Query: 437 RENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGAS 496
RENILR+RASGK VLT PF+L+ SNHLGVVLTF VY+ DLP DA E+R+ AT GYLG S
Sbjct: 198 RENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHVDLPPDAKEEERVAATAGYLGGS 256
Query: 497 YDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGL---LRVSNLDFGDP 553
+DV SLVE LL QLA Q +VVNVYD TN+S P+ MYG +V G+ + LDFGDP
Sbjct: 257 FDVESLVENLLRQLAGNQELVVNVYDVTNSSDPLVMYGSEVP-LGIPSPWHICMLDFGDP 315
Query: 554 SRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKA 613
RKH M CR++ KPP+PW+AI+ GV VI +LVG+I AA +R V+ D +M ELK
Sbjct: 316 FRKHHMVCRYRNKPPLPWSAISTPSGVFVICMLVGYIVFAAWSRYDNVKEDCRKMEELKK 375
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+AEAADVAKSQFLATVSHEIRTPMNGVLGML ML+DT+L + Q D+AQTA GK LISL
Sbjct: 376 QAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISL 435
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IN+VLD+AKIE+G+L+ E VPF L +LD+V++LFSSK+ +KGIELA+YVS+RVPE+++G
Sbjct: 436 INEVLDRAKIEAGKLDLESVPFDLRSILDDVIALFSSKSREKGIELAVYVSERVPEILLG 495
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
DPGRFRQIITNLVGNSIKFT+ +GHIFV VHLAD + + + + +N HK +K
Sbjct: 496 DPGRFRQIITNLVGNSIKFTE-RGHIFVQVHLADHSNLATESEVEPVANGMNG--HKDEK 552
Query: 794 V-------YNTLSGFPVVDRWKSWENFKML----DNTNTMEQLG-RIKLLVTVEDTGVGI 841
NTLSGF D SWENFK+L N E + ++ L+V+VEDTG+GI
Sbjct: 553 TAVATGVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGI 612
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
PL+AQ ++FTPFMQADSSTSRTYGGTGIGLSIS+CLVELMGG+I FVS P GSTF+FT
Sbjct: 613 PLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISQCLVELMGGQINFVSRPQVGSTFTFTA 672
Query: 902 TFTEGERNSL-DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
+R+++ D K P S F+GL AL++D + +RA VT+YHLQRL +A V ++
Sbjct: 673 VLQRCDRSAIGDSKPVMLHPLPSSFKGLSALLVDTRPVRATVTKYHLQRLGIACDVVATI 732
Query: 961 QLACSYLSDTCSTSVLP--QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
LA LS +S+ Q ++LI+ D W +I + L L + ++ G + LPK
Sbjct: 733 DLALGVLSGRNGSSLTSTKQPCMLLIESDSWGFKIDVSLRSRLLEMKQDGHTNL---LPK 789
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC-FQEDPESSKKLQQKRKKPSLGH 1077
I LLA + S + D ++ TKPL+ S L C FQ + +++ SL
Sbjct: 790 IILLAAAESSKLKAHYAVDSVI---TKPLKASALAACLFQTLGITQSSNERRDNSGSLHG 846
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
LL GK ILVVDDN VN RVA G LKK GA V CV+ G+ A+ L P+ F C MD+QMP
Sbjct: 847 LLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVPYKFHLCLMDIQMP 906
Query: 1138 EMDGFQATWQIRHLENEINEQ-IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
EMDGF+AT QIR +E + NEQ +A +S + WH+P+LAMTADVIQA++E+C K
Sbjct: 907 EMDGFEATQQIRTMEAKANEQAVACDDSETDGATRAAKWHLPVLAMTADVIQATHEECTK 966
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFFMSG 1223
GMD YV+KPFE++QL+ A+ +F G
Sbjct: 967 YGMDGYVTKPFEEKQLFQALQKFLDPG 993
Score = 41.6 bits (96), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 44 FLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMS-CEKKAQIFLQHSNVSHNQLHALAT 102
LW+L +G + S A +EEEG +S CE++A++ VS N +HALA
Sbjct: 45 LLWMLVAATIG-VFLHWSIRHAAL--RKEEEGLVSMCEERARMLQDQFAVSVNHVHALAI 101
Query: 103 LFSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAED 153
L + DQ + T L +G+ A +V ++ ++ F++Q W+ +
Sbjct: 102 LVATFHYEKHPPALDQDTFAEYTARTSFERPLLSGVAYAQRVEHADREGFERQQGWIIKT 161
Query: 154 VKQMDQCPVED 164
+K + PV+D
Sbjct: 162 MKH-EPSPVQD 171
>gi|215878091|gb|ACJ63457.1| putative histidine kinase [Brassica rapa subsp. pekinensis]
Length = 1070
Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/980 (54%), Positives = 676/980 (68%), Gaps = 65/980 (6%)
Query: 267 KILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAI 326
K L+++ ++ IS ++ + + +RR+E L SMCD+RARMLQDQF+VS+NHVHALAI
Sbjct: 117 KGLILWTIIVGFISRGIYQWMDDTSKVRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 176
Query: 327 LVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKK 386
LVSTFH+ K+PSA+DQ TF +YT RTAFERPL SGVAYA KV+++ERE FE QH W IK
Sbjct: 177 LVSTFHYHKNPSAIDQGTFADYTARTAFERPLLSGVAYAEKVVNAEREMFESQHNWVIKT 236
Query: 387 METEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARAS 446
M+T + P+PV+DEYAPVIFSQ++VS++ S+DMMSG+EDRENILRAR +
Sbjct: 237 MDTGE-------------PSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARET 283
Query: 447 GKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKL 506
GK VLT PF+LL S+HLGVVLTF VY LP++ T ++RI AT GYLG ++DV SLVE L
Sbjct: 284 GKAVLTSPFRLLASHHLGVVLTFPVYKASLPKNPTVQERIAATAGYLGGAFDVESLVENL 343
Query: 507 LHQLASKQTIVVNVYDTTNASAPINMYG--PDVTDTGLLRVSNLDFGDPSRKHEMHCRFK 564
L QLA Q IVV+VYD TNAS P+ MYG + DT L S LDFGDP RKH+M CR+
Sbjct: 344 LGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEGDTSLYHESKLDFGDPFRKHKMICRYL 403
Query: 565 QKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQ 624
QK P+P + I LVG+I + A I +VE+D+HEM ELK RAEAADVAKSQ
Sbjct: 404 QKAPIPLNVLTTVPLFFAIGFLVGYILYGAAVHIVKVEDDFHEMQELKVRAEAADVAKSQ 463
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FLATVSHEIRTPMNG+LGML ML+DTEL + Q DYAQTA GK LI+LIN+VLD+AKIE
Sbjct: 464 FLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIE 523
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G+LE E VPF + +LD+VLSLFS ++ KGIELA++VSD+VPE+V GD GRFRQII N
Sbjct: 524 AGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIIN 583
Query: 745 LVGNSIKFTQDKGHIFVSVHLA----DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
LVGNS+KFT+ KGHIFV VHLA D SK + V + + + S YNTLSG
Sbjct: 584 LVGNSVKFTE-KGHIFVKVHLAEQSKDGAESKPALNGGVASEDITAASKPSS--YNTLSG 640
Query: 801 FPVVDRWKSWENFKMLDNTNTM------EQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
+ D SW++FK L ++ + E ++L+V++EDTG+GIPL AQ R+F PFM
Sbjct: 641 YEAADGRNSWDSFKHLLSSEELLTSSEFEASSNVRLMVSIEDTGIGIPLTAQGRVFMPFM 700
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSSTSRTYGGTGIGLSIS+CLVELM G+I FVS P GSTF FT F ++ SL
Sbjct: 701 QADSSTSRTYGGTGIGLSISKCLVELMRGQISFVSRPRVGSTFWFTAVFERCDKCSLKKP 760
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
+ +P S FRG+RA+V+D K +RA VTRYH++RL ++V V S++ A S S + S
Sbjct: 761 TVENLP--SSFRGMRAIVVDAKPVRAAVTRYHMKRLGISVDVMTSLRTAVSTASGR-NGS 817
Query: 975 VLP----QLALVLIDKDVW------DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
LP +L ++L++KD W D EI +Q + + PK+ L AT
Sbjct: 818 PLPSGTTKLDMILVEKDSWISTEDIDAEI--------RQMNSRTNGNVRHKTPKLALFAT 869
Query: 1025 SISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS---LGHLLK 1080
+I+ ++ D KS G T++ KPLR S++ C Q+ E K QQ + S L LL
Sbjct: 870 NITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKARQQHPEGSSPATLKSLLT 929
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
GK+ILV+DDNMVNRRVA GALKK GA V C + G+ A+ L PH+FDACFMD+QMP+MD
Sbjct: 930 GKKILVIDDNMVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHSFDACFMDIQMPQMD 989
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
GF+AT QIR +E E E+ WH+PILAMTADVI A+ E+C+K GMD
Sbjct: 990 GFEATRQIRMMEKEAKEKTKLE------------WHLPILAMTADVIHATYEECLKSGMD 1037
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
YVSKPFE+E LY +VA+ F
Sbjct: 1038 GYVSKPFEEENLYKSVAKSF 1057
>gi|357126560|ref|XP_003564955.1| PREDICTED: histidine kinase 3-like [Brachypodium distachyon]
Length = 1019
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/962 (54%), Positives = 671/962 (69%), Gaps = 63/962 (6%)
Query: 280 SVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSA 339
S W+F+ + +R+E+LASMCDERARMLQDQFNVSMNH+ ALAILVSTFHH + PSA
Sbjct: 93 SCWIFYYENSQAVEKRRESLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHAQTPSA 152
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLV---- 395
++Q TF Y ERTAFERPLTSGVAYA++V H ER+QFE+Q GW IKKM + +
Sbjct: 153 INQATFARYAERTAFERPLTSGVAYAVRVTHGERDQFERQQGWSIKKMYSSKKKSPGPGP 212
Query: 396 -QDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPP 454
T E +PA +EYAPVIF+Q+ H++S DM+SG +DRENILRAR SGKGVLT P
Sbjct: 213 GDAATAEIREPA---EEYAPVIFAQDAYKHVLSFDMLSGDDDRENILRARESGKGVLTAP 269
Query: 455 FKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQ 514
FKLL +N LGV+ T+ VY ++ P A P++RI+A +GYLG +D+ +LV+KLLHQLA KQ
Sbjct: 270 FKLL-NNRLGVISTYTVYKSEFPAYARPQERIQAAIGYLGGIFDIEALVDKLLHQLAGKQ 328
Query: 515 TIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAI 574
+I+VNVYDTTN PI+MYG + T G+ S L+FGDPSR+HEMHCRF QKPP+PW AI
Sbjct: 329 SIMVNVYDTTN-EKPISMYGSNDTGGGMYHNSTLNFGDPSRRHEMHCRFMQKPPLPWLAI 387
Query: 575 NASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIR 634
+S+G +VI LL G+IFHA ++RIA+VE+DY MMELK RAEAAD+AKSQFLATVSHEIR
Sbjct: 388 TSSLGTLVIALLTGYIFHATVHRIAKVEDDYQNMMELKKRAEAADIAKSQFLATVSHEIR 447
Query: 635 TPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVP 694
TPMNGVLGMLQMLMDT+LD Q D+ +TA SGK L+SLIN+VLDQAKIESG+LE E VP
Sbjct: 448 TPMNGVLGMLQMLMDTDLDTTQQDFVRTAQASGKALVSLINEVLDQAKIESGKLELEAVP 507
Query: 695 FHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQ 754
F L V D++LSLF KA +KG+ELA+YVSD+VP+ +IGDPGR RQIITNL+ NSIKFT+
Sbjct: 508 FDLRIVCDDILSLFCGKAQEKGLELAVYVSDQVPQTLIGDPGRMRQIITNLMSNSIKFTE 567
Query: 755 DKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFK 814
+GHI+++VH+ ++V ++VK NTLSG+PV +R +SWE+F+
Sbjct: 568 -RGHIYLTVHVVEEVMGCLEVK-------------TGTHYTNTLSGYPVANRRRSWESFR 613
Query: 815 MLDNTNTMEQL-------GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGT 867
+ D ++ I+L+++VEDTG GIP EAQ RIFTP+MQ S +R +GGT
Sbjct: 614 LFDMDLHSSEMPFTPVTPDTIRLIISVEDTGAGIPFEAQYRIFTPYMQVGPSIARIHGGT 673
Query: 868 GIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927
GIGLSIS+CLV LM GEIGFVS+P GSTFSFT T + N + S F+G
Sbjct: 674 GIGLSISKCLVHLMKGEIGFVSKPHVGSTFSFTAVLTRAQSNG-------NLNKSSGFKG 726
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM-----QLACSYLSDTCSTSVLPQLALV 982
+ ALV+D + +RA+V +YHLQRL + + + +L C L+ LV
Sbjct: 727 INALVVDHRPVRAKVAKYHLQRLGVQTELTTDVNQIIPKLNCGPLA----------AKLV 776
Query: 983 LIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT-SISETDRDELKSDGIVT 1041
L+DK+ W KE + H + K + + + PK FLL + S + S+ +
Sbjct: 777 LVDKETWLKESHSMPHLVSKLRNKD-----QADPPKFFLLENPTSSIKSSSHISSEHNLN 831
Query: 1042 LLTKPLRLSVLIGCFQEDPESSKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAE 1098
++ KPLR S+L ++ K+ K +LG LL KQI+VVDDN VN +VA
Sbjct: 832 VIKKPLRASMLQVSLRQALGGVDKVHCKNGVVGNSTLGSLLHKKQIIVVDDNAVNLKVAA 891
Query: 1099 GALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ 1158
GALKK+GA+VTC D G+ A+ L+PPH FDACFMD+QMPEMDGFQAT +IR +E+++NE+
Sbjct: 892 GALKKYGAVVTCADSGKKAIAYLSPPHIFDACFMDIQMPEMDGFQATKEIRKMESKLNEK 951
Query: 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
I SG+ E NV W PILAMTADVIQA+ E+C+KC MD YVSKPFE EQLY V R
Sbjct: 952 IESGDVPPECV-NVRRWRTPILAMTADVIQATYEECLKCEMDGYVSKPFEGEQLYREVTR 1010
Query: 1219 FF 1220
FF
Sbjct: 1011 FF 1012
>gi|356513022|ref|XP_003525213.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 1011
Score = 1010 bits (2612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/984 (55%), Positives = 689/984 (70%), Gaps = 53/984 (5%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W K L++++LL I +++ + +RRKE L S+CD+RARMLQDQF+VS+NHVHA
Sbjct: 38 WLPKFLMLWILLMALIGCFIYSKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHA 97
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
LAILVSTFH+ + PSA+DQ+TF EYT RTAFERPL SGVAYA +V++SER FEKQHGW
Sbjct: 98 LAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERGTFEKQHGWV 157
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
IK ME E P+ V+DEYAPVIF+QET+S++ S+DMMSG+EDRENILRA
Sbjct: 158 IKTMERE--------------PSLVRDEYAPVIFAQETLSYLESLDMMSGEEDRENILRA 203
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
RA+GK VLT PF LL S+HLGVVLTF VY + LP T E+RI+AT GY+G S+DV SLV
Sbjct: 204 RATGKAVLTSPFNLLGSHHLGVVLTFPVYKSKLPPKPTMEERIKATAGYVGGSFDVESLV 263
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYGP--DVTDTGLLRVSNLDFGDPSRKHEMHC 561
E LL QLA Q I+VNVYD TN++ P+ MYG + D L+ S LDFGDP R H M C
Sbjct: 264 ENLLGQLAGHQAILVNVYDITNSTNPLIMYGNQNEEGDMSLVHESKLDFGDPYRNHTMIC 323
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R+ QK P W A+ + VI LLVG+I + A N I +VE+D+H+M ELK RAEAADVA
Sbjct: 324 RYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHQMEELKVRAEAADVA 383
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNG+LGML +L+ TEL + Q DYAQTA GK LI+LIN+VLD+A
Sbjct: 384 KSQFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYAQTAQACGKALIALINEVLDRA 443
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+LE E VPF + +LD+VLSLFS K+ KG+ELA++VSD+VP++V+GDPGRFRQI
Sbjct: 444 KIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELAVFVSDKVPDIVMGDPGRFRQI 503
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK-DKVLEKSLNSVQHKSDKVYN--TL 798
+TNLVGNS+KFT+ +GHIFV VHL+++ S ++ K +K + + H S YN TL
Sbjct: 504 VTNLVGNSVKFTE-RGHIFVKVHLSENSMSTMNGKTEKFINRGSGEPVHMSG-AYNSKTL 561
Query: 799 SGFPVVDRWKSWENFKMLDNTNTM-----------EQLGRIKLLVTVEDTGVGIPLEAQV 847
SG+ D SW+NFK L E ++ L+V+VEDTG+GIP AQ
Sbjct: 562 SGYEAADERNSWDNFKHLIADEEFFFDASVKKAASESYEQVTLMVSVEDTGIGIPFSAQD 621
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
RIF PF+QADSSTSR YGGTGIGLSIS+CLVELMGGEI F+S+ GSTFSFT F E
Sbjct: 622 RIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISQLQVGSTFSFTAGFGTIE 681
Query: 908 RNSLDPKWQQYVPDV-SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+N++ + + D+ S FRGL+A+V+D K +RA VTRYHL+RL + VANS+ A S
Sbjct: 682 KNAITDMKKHNLEDLPSNFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSL 741
Query: 967 LSDTCS-TSVLPQLALVLIDKDVW---DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
S TSVL Q ++ ++KD W + EI V KQ +P++ LL
Sbjct: 742 CGKNGSLTSVLFQPDIIFVEKDSWVCGEDEIFNVWQLDWKQNGHM------FKIPQMILL 795
Query: 1023 ATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQ-KRKKPS----LG 1076
AT+I + D+ K+ G T++ KPLR S++ C Q+ + KK Q K KP+ +
Sbjct: 796 ATNIGNAEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQHGKDMKPNGSTLVR 855
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
LL GK+ILVVDDN+VNRRVA GALK GA VTC + G+ A++ L PHNFDACFMD+QM
Sbjct: 856 SLLCGKKILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEMLQLPHNFDACFMDIQM 915
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PEMDGFQAT +IR +E + NEQ +GE + G +H+PILAMTADVI A+ ++C+K
Sbjct: 916 PEMDGFQATQRIRMMETKANEQQMNGEGN----GWKDKYHIPILAMTADVIHATYDECVK 971
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
GMD YVSKPFE+E LY AVA+FF
Sbjct: 972 YGMDGYVSKPFEEENLYQAVAKFF 995
Score = 43.1 bits (100), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 45 LWLLGFVIVGSICFLLS-CDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATL 103
LW+L ++G CF+ S D V +E G + C+++A++ +VS N +HALA L
Sbjct: 45 LWILLMALIG--CFIYSKMDADTKVRRKEVLGSL-CDQRARMLQDQFSVSVNHVHALAIL 101
Query: 104 FSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDV 154
S DQ + T L +G+ A +V S++ F+KQ W+ +
Sbjct: 102 VSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERGTFEKQHGWV---I 158
Query: 155 KQMDQCP 161
K M++ P
Sbjct: 159 KTMEREP 165
>gi|356524638|ref|XP_003530935.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 1016
Score = 1010 bits (2611), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/982 (55%), Positives = 688/982 (70%), Gaps = 45/982 (4%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W K L++++LL I ++F + +RRKE L S+CD+RARMLQDQF+VS+NHVHA
Sbjct: 38 WLPKFLMLWILLMALIGCFIFSKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHA 97
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
LAILVSTFH+ + PSA+DQ+TF EYT RTAFERPL SGVAYA +V++SERE FEKQHGW
Sbjct: 98 LAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERETFEKQHGWV 157
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
IK ME E P+ V+DEYAPVIF QET+S++ SIDMMSG+EDRENILRA
Sbjct: 158 IKTMERE--------------PSLVRDEYAPVIFVQETLSYLESIDMMSGEEDRENILRA 203
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
RA+GK VLT PF+LL S+HLGVVLTF VY + LP T E+RI+AT GY+G S+DV SLV
Sbjct: 204 RATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTMEERIKATAGYVGGSFDVESLV 263
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYGP--DVTDTGLLRVSNLDFGDPSRKHEMHC 561
E LL QLA Q I+VNVYD TN++ + MYG + D L+ S LDFGD RKH M C
Sbjct: 264 ENLLGQLAGHQAILVNVYDITNSTDHLIMYGNQNEEGDMSLVHESKLDFGDSYRKHTMIC 323
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R+ QK P W A+ + VI LLVG+I + A N I +VE+D+H+M ELK RAEAA VA
Sbjct: 324 RYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHQMEELKVRAEAAHVA 383
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNG+LGML +L+ TEL + Q DYAQTA GK LI+LIN+VLD+A
Sbjct: 384 KSQFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYAQTAQACGKALIALINEVLDRA 443
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+LE E VPF + +LD+VLSLFS K+ KG+ELA++VSD+VP++V+GDPGRFRQI
Sbjct: 444 KIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELAVFVSDKVPDIVMGDPGRFRQI 503
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK-DKVLEKSLNSVQHKSDKVYN--TL 798
+TNLVGNS+KFT+ +GH+FV VHL+++ S ++ K +K L L+ H S YN TL
Sbjct: 504 VTNLVGNSVKFTE-RGHVFVKVHLSENRMSTMNGKIEKFLNGGLDEPVHMSGG-YNSKTL 561
Query: 799 SGFPVVDRWKSWENFKMLDNTNTM-----------EQLGRIKLLVTVEDTGVGIPLEAQV 847
SG+ D SW+NFK L E ++ L+V+VEDTG+GIP AQ
Sbjct: 562 SGYEAADERNSWDNFKHLIADEEFFYDASVKRVASESYEQVTLMVSVEDTGIGIPFSAQD 621
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
RIF PF+QADSSTSR YGGTGIGLSIS+CLVELMGGEI F+S+P GSTFSFT F +
Sbjct: 622 RIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISQPQVGSTFSFTADFGTIK 681
Query: 908 RNSLDPKWQQYVPDV-SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+N++ + + D+ S FRGL+A+V+D K +RA VTRYHL+RL + VANS A S
Sbjct: 682 KNAITDMKKHNLEDLPSNFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSFNKAVSL 741
Query: 967 LS-DTCSTSVLPQLALVLIDKDVWD-KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
+ C TS L Q ++ ++KD W E G+ + L ++ + +I P++ LLAT
Sbjct: 742 CGKNGCLTSGLFQPDIIFVEKDSWVCVEDGIFNVWQLDWKQNRHIFKI----PQMILLAT 797
Query: 1025 SISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG-----HL 1078
+I + D+ K+ G T++ KPLR S++ C Q+ + KK Q + G L
Sbjct: 798 NIGNDEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQHGKDMNPNGSTFVRSL 857
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L GK+ILVVDDN+VNRRVA GALK GA VTC + G+ A++ L PHNFDACFMD+QMPE
Sbjct: 858 LCGKKILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEMLQLPHNFDACFMDIQMPE 917
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDGF+AT QIR +E + NEQ +GE +H+PILAMTADVI A+ ++C+KCG
Sbjct: 918 MDGFEATRQIRMMETKANEQQMNGECGEGNGWKDKKYHIPILAMTADVIHATYDECVKCG 977
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
MD YVSKPFE+E LY AVA+FF
Sbjct: 978 MDGYVSKPFEEENLYQAVAKFF 999
Score = 44.7 bits (104), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 16/127 (12%)
Query: 45 LWLLGFVIVGSICFLLS-CDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATL 103
LW+L ++G CF+ S D V +E G + C+++A++ +VS N +HALA L
Sbjct: 45 LWILLMALIG--CFIFSKMDADTKVRRKEVLGSL-CDQRARMLQDQFSVSVNHVHALAIL 101
Query: 104 FSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDV 154
S DQ + T L +G+ A +V S+++ F+KQ W+ +
Sbjct: 102 VSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERETFEKQHGWV---I 158
Query: 155 KQMDQCP 161
K M++ P
Sbjct: 159 KTMEREP 165
>gi|370988691|dbj|BAL43559.1| cytokinin receptor histidine protein kinase [Petunia x hybrida]
Length = 985
Score = 1010 bits (2611), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/974 (53%), Positives = 693/974 (71%), Gaps = 48/974 (4%)
Query: 267 KILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAI 326
K+ ++++ +S+ +++ + +RKE L SMCD+RARMLQDQF+VS+NHVHALAI
Sbjct: 36 KMFALWIIFCTFVSIGVYFYMDANQKEKRKEGLVSMCDQRARMLQDQFSVSVNHVHALAI 95
Query: 327 LVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKK 386
LVSTFH+ K+PSA+DQKTF EYT RTAFERPL SGVAYA +VL+SERE+FE++HGW I+
Sbjct: 96 LVSTFHYEKNPSALDQKTFAEYTARTAFERPLLSGVAYAERVLNSEREEFEREHGWTIRT 155
Query: 387 METEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARAS 446
ME E P+P++DEY+PVIFSQETVS+I S+DMMSG+EDRENILRARAS
Sbjct: 156 MERE--------------PSPIRDEYSPVIFSQETVSYIESLDMMSGEEDRENILRARAS 201
Query: 447 GKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKL 506
GK VLT PF+LL S+HLGVVLTF VY + LP + T ++R+EAT GYLG ++DV SLVE L
Sbjct: 202 GKAVLTNPFRLLGSHHLGVVLTFPVYKSKLPPNPTEQERVEATAGYLGGAFDVESLVESL 261
Query: 507 LHQLASKQTIVVNVYDTTNASAPINMYGPD--VTDTGLLRVSNLDFGDPSRKHEMHCRFK 564
L QLA+ I+VNVYD TN+S + MYG D L VS LDFGDP RKHEM CR+
Sbjct: 262 LGQLAANHPIIVNVYDVTNSSDSLIMYGHQNPKGDASLKHVSKLDFGDPFRKHEMICRYL 321
Query: 565 QKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQ 624
P+ A+ +I + I +L+G+ + + + I +VE+D+H+M ELK +AEAADVAKSQ
Sbjct: 322 HDAPISRGAVTTAIFIFTIFVLIGYTGYKSASHINKVEDDFHKMQELKVQAEAADVAKSQ 381
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FLATVSHEIRTPMNG+LGML +L+DT+L + Q DYAQTA GK LI+LIN+VLD+AKIE
Sbjct: 382 FLATVSHEIRTPMNGILGMLALLLDTDLRSTQRDYAQTAQACGKSLITLINEVLDRAKIE 441
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G+LE E VPF L +LD+VLSLFS ++ +KG+ELA++VSD+VP +V+GDPGRFRQ+ITN
Sbjct: 442 AGKLELEAVPFDLRSILDDVLSLFSDESRRKGVELAVFVSDKVPGIVMGDPGRFRQVITN 501
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVV 804
LVGNS+KFT+ +GHIFV VHLA+ + V K+ + +S+ VY TLSG+
Sbjct: 502 LVGNSVKFTE-QGHIFVQVHLAEQTKDGV--------KNNTCLTGESESVYETLSGYETA 552
Query: 805 DRWKSWENFK--MLDNTNTMEQLGR---------IKLLVTVEDTGVGIPLEAQVRIFTPF 853
+W++ K + DN + + + ++V+VEDTG+GIP++AQ R+FTPF
Sbjct: 553 ASQNTWDSLKHTIADNGLYYKSATKEANDDLSQNVTVMVSVEDTGIGIPIQAQDRVFTPF 612
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
MQADSSTSR YGGTGIGLSIS+CLVELMGG+IGF+S P GSTFSFT+ E+ ++
Sbjct: 613 MQADSSTSRNYGGTGIGLSISKCLVELMGGQIGFISRPQIGSTFSFTLNLLRCEKYAVSD 672
Query: 914 KWQQYVPDV-SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCS 972
+ + D+ + F+GL A+++D K +RA VT YHL+RL + VA S++ A + L S
Sbjct: 673 LKKSHSDDLPTSFKGLNAIIVDGKPVRAAVTGYHLKRLGIRAEVAGSIKKAAAALGRNGS 732
Query: 973 -TSVLPQLALVLIDKDVW-DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
S +L ++L++K++W +++ L LH L + G + +PK+ LLAT+++ ++
Sbjct: 733 VVSNDRKLDMILVEKELWLSEDVDLNLH--LPDIKPNGHV---YKIPKMILLATNLTNSE 787
Query: 1031 RDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKR--KKPSLGHLLKGKQILVVD 1088
++ K+ G ++ KPLR S++ C ++ K + K SL LL GK+ILVVD
Sbjct: 788 DEKAKAVGFAVIM-KPLRASMMAACLKQLIGIGNKREGKDMCNGSSLRGLLCGKKILVVD 846
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQI 1148
DN+VNRRVA GALKK GA V C D G+AA+ L PHNFDACFMD+QMPEMDGF+AT +I
Sbjct: 847 DNLVNRRVAAGALKKFGADVECADSGKAALSLLQIPHNFDACFMDIQMPEMDGFEATRRI 906
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
R LE NEQ+ G +S + WH+PILAMTADVI A+ E+C+KCGMD YVSKPFE
Sbjct: 907 RDLERVANEQLNGGLNS-DGATKWRKWHMPILAMTADVIHATLEKCLKCGMDGYVSKPFE 965
Query: 1209 DEQLYTAVARFFMS 1222
+E LY AV++FF S
Sbjct: 966 EENLYQAVSKFFES 979
>gi|89242035|dbj|BAE80688.1| histidine kinase [Zea mays]
Length = 995
Score = 1007 bits (2603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/988 (54%), Positives = 681/988 (68%), Gaps = 50/988 (5%)
Query: 261 AGKWRMKI------LVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQF 314
G W +K ++V+VL +A+ V+L + + +E L SMC+ERARMLQDQF
Sbjct: 30 GGGWTLKAKLIAVAVLVWVLGALALGVFLHSYFRHAALRKAEEGLVSMCEERARMLQDQF 89
Query: 315 NVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSERE 374
VS+NHVHALAILV+TFH+ K P A+DQ TF +YT RT+FERPL SGVAYA +V+H +RE
Sbjct: 90 AVSVNHVHALAILVATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRE 149
Query: 375 QFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGK 434
FE+Q GW IK M+ E P+PVQDEYAPV++SQETVS+I +DMMSG+
Sbjct: 150 SFERQQGWIIKTMKHE--------------PSPVQDEYAPVVYSQETVSYIEGLDMMSGE 195
Query: 435 EDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLG 494
EDRENILR+RASGK VLT PF+L+ SNHLGVVLTF VY+ DL DA E R+ AT GYLG
Sbjct: 196 EDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHVDLSSDAKEEDRVAATAGYLG 254
Query: 495 ASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVT--DTGLLRVSNLDFGD 552
S+DV SLVE LL QLA Q +VVNVYD TN+S P+ MYG +V+ + + LDFGD
Sbjct: 255 GSFDVESLVENLLRQLAGNQELVVNVYDVTNSSNPLVMYGSEVSLGNPSPSHICMLDFGD 314
Query: 553 PSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELK 612
P RKH M CR++ KP +PW+AI++S GV VI +LVG+I AA +R V+ D +M ELK
Sbjct: 315 PFRKHHMVCRYRNKPQLPWSAISSSSGVFVICMLVGYIVGAAWSRYDNVKEDCRKMEELK 374
Query: 613 ARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLIS 672
+AEAADVAKSQFLATVSHEIRTPMNGVLGML ML+DT+L + Q D+AQTA GK LIS
Sbjct: 375 KQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALIS 434
Query: 673 LINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVI 732
LIN+VLD+AKIE+G+L+ E VPF L +LD+V+SLFSSK+ +KGIELA+YVS+RVPE+++
Sbjct: 435 LINEVLDRAKIEAGKLDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPELLL 494
Query: 733 GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSD 792
GDPGRFRQIITNLVGNSIKFT+ +GHIFV VHLAD + K + + +N HK +
Sbjct: 495 GDPGRFRQIITNLVGNSIKFTE-RGHIFVQVHLADHSNLATESKVESVANGMNG--HKDE 551
Query: 793 KV-------YNTLSGFPVVDRWKSWENFKML----DNTNTMEQLG-RIKLLVTVEDTGVG 840
K NTLSGF D SWENFK+L N E + ++ L+V+VEDTG+G
Sbjct: 552 KTAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIG 611
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
IPL+AQ ++FTPFMQADSSTSRTYGGTGIGLSIS+CLVELMGG+I FVS P GSTF+FT
Sbjct: 612 IPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFT 671
Query: 901 VTFTEGERNSL-DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
+R+++ D K P S F+GL AL++D + +RA VT+YHLQRL +A V +
Sbjct: 672 AALQRCDRSAIGDSKPVMLHPLPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVAT 731
Query: 960 MQLACSYLSDTCSTSVLP--QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
++LA LS +S+ Q ++LI+ D W +I + L L + ++ G LP
Sbjct: 732 IELALGVLSGRNGSSLTSTKQPCMLLIESDSWGFKIDVPLRSRLLEMKQNG----PPGLP 787
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC-FQEDPESSKKLQQKRKKPSLG 1076
K LLA + S + D ++ TKPL+ S L C FQ + +++ SL
Sbjct: 788 KTILLAAAESGKLKAHYAVDSVI---TKPLKASGLAACLFQTLGITQSSNERRDNSGSLH 844
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
LL GK ILVVDDN VN RVA G LKK GA V CV+ G+ A+ L PH F C MD+QM
Sbjct: 845 GLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLMDIQM 904
Query: 1137 PEMDGFQATWQIRHLENEINEQ-IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
PEMDGF+AT QIR +E + NEQ +A +S + WH+P+LAMTADVIQA++E+C
Sbjct: 905 PEMDGFEATKQIRAMEAKANEQAVACDDSDTDGATRAARWHLPVLAMTADVIQATHEECT 964
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
K GMD YV+KPFE++QL+ A+ +F G
Sbjct: 965 KYGMDGYVTKPFEEKQLFQALQKFLDPG 992
Score = 41.2 bits (95), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 44 FLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMS-CEKKAQIFLQHSNVSHNQLHALAT 102
+W+LG + +G FL S A + + EEG +S CE++A++ VS N +HALA
Sbjct: 45 LVWVLGALALG--VFLHSYFRHAAL-RKAEEGLVSMCEERARMLQDQFAVSVNHVHALAI 101
Query: 103 LFSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAED 153
L + DQ T L +G+ A +V + ++ F++Q W+ +
Sbjct: 102 LVATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQGWIIKT 161
Query: 154 VKQMDQCPVED 164
+K + PV+D
Sbjct: 162 MKH-EPSPVQD 171
>gi|414872484|tpg|DAA51041.1| TPA: putative histidine kinase family protein [Zea mays]
Length = 997
Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/974 (54%), Positives = 677/974 (69%), Gaps = 44/974 (4%)
Query: 269 LVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILV 328
++V+VL +A+ V+L + + +E L SMC+ERARMLQDQF VS+NHVHALAILV
Sbjct: 46 VLVWVLGALALGVFLHSYFRHAALRKAEEGLVSMCEERARMLQDQFAVSVNHVHALAILV 105
Query: 329 STFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKME 388
+TFH+ K P A+DQ TF +YT RT+FERPL SGVAYA +V+H +RE FE+Q GW IK M+
Sbjct: 106 ATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQGWIIKTMK 165
Query: 389 TEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGK 448
E P+PVQDEYAPV++SQETVS+I +DMMSG+EDRENILR+RASGK
Sbjct: 166 HE--------------PSPVQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASGK 211
Query: 449 GVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLH 508
VLT PF+L+ SNHLGVVLTF VY+ DL DA E R+ AT GYLG S+DV SLVE LL
Sbjct: 212 AVLTRPFRLM-SNHLGVVLTFPVYHVDLSSDAKEEDRVAATAGYLGGSFDVESLVENLLR 270
Query: 509 QLASKQTIVVNVYDTTNASAPINMYGPDVT--DTGLLRVSNLDFGDPSRKHEMHCRFKQK 566
QLA Q +VVNVYD TN+S P+ MYG +V+ + + LDFGDP RKH M CR++ K
Sbjct: 271 QLAGNQELVVNVYDVTNSSNPLVMYGSEVSLGNPSPSHICMLDFGDPFRKHHMVCRYRNK 330
Query: 567 PPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFL 626
P +PW+AI++S GV VI +LVG+I AA +R V+ D +M ELK +AEAADVAKSQFL
Sbjct: 331 PQLPWSAISSSSGVFVICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFL 390
Query: 627 ATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESG 686
ATVSHEIRTPMNGVLGML ML+DT+L + Q D+AQTA GK LISLIN+VLD+AKIE+G
Sbjct: 391 ATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAG 450
Query: 687 RLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLV 746
+L+ E VPF L +LD+V+SLFSSK+ +KGIELA+YVS+RVPE+++GDPGRFRQIITNLV
Sbjct: 451 KLDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLV 510
Query: 747 GNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV-------YNTLS 799
GNSIKFT+ +GHIFV VHLAD + K + + +N HK +K NTLS
Sbjct: 511 GNSIKFTE-RGHIFVQVHLADHSNLATEPKVESVANGMNG--HKDEKTAVATSVSLNTLS 567
Query: 800 GFPVVDRWKSWENFKML----DNTNTMEQLG-RIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
GF D SWENFK+L N E + ++ L+V+VEDTG+GIPL+AQ ++FTPFM
Sbjct: 568 GFEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFM 627
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL-DP 913
QADSSTSRTYGGTGIGLSIS+CLVELMGG+I FVS P GSTF+FT +R+++ D
Sbjct: 628 QADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQRCDRSAIGDS 687
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
K P S F+GL AL++D + +RA VT+YHLQRL +A V +++LA LS +
Sbjct: 688 KPVMLHPLPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRNGS 747
Query: 974 SVLP--QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
S+ Q ++LI+ D W +I + L L + ++ G LPK LLA + S +
Sbjct: 748 SLTSTKQPCMLLIESDSWGFKIDVPLRSRLLEMKQNG----PPGLPKTILLAAAESGKLK 803
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGC-FQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDN 1090
D ++ TKPL+ S L C FQ + +++ SL LL GK ILVVDDN
Sbjct: 804 AHYAVDSVI---TKPLKASGLAACLFQTLGITQSSNERRDNSGSLHGLLLGKNILVVDDN 860
Query: 1091 MVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRH 1150
VN RVA G LKK GA V CV+ G+ A+ L PH F C MD+QMPEMDGF+AT QIR
Sbjct: 861 KVNLRVAAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGFEATKQIRA 920
Query: 1151 LENEINEQ-IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
+E + NEQ +A +S + WH+P+LAMTADVIQA++E+C K GMD YV+KPFE+
Sbjct: 921 MEAKANEQAVACDDSETDGATRAARWHLPVLAMTADVIQATHEECTKYGMDGYVTKPFEE 980
Query: 1210 EQLYTAVARFFMSG 1223
+QL+ A+ +F G
Sbjct: 981 KQLFQALQKFLDPG 994
Score = 41.2 bits (95), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 44 FLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMS-CEKKAQIFLQHSNVSHNQLHALAT 102
+W+LG + +G FL S A + + EEG +S CE++A++ VS N +HALA
Sbjct: 47 LVWVLGALALG--VFLHSYFRHAAL-RKAEEGLVSMCEERARMLQDQFAVSVNHVHALAI 103
Query: 103 LFSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAED 153
L + DQ T L +G+ A +V + ++ F++Q W+ +
Sbjct: 104 LVATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQGWIIKT 163
Query: 154 VKQMDQCPVED 164
+K + PV+D
Sbjct: 164 MKH-EPSPVQD 173
>gi|162458745|ref|NP_001105858.1| LOC732762 [Zea mays]
gi|89242033|dbj|BAE80687.1| histidine kinase [Zea mays]
Length = 995
Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/982 (54%), Positives = 679/982 (69%), Gaps = 48/982 (4%)
Query: 265 RMKILVVFVLLGI----AISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNH 320
+ K++ V VLL + A+ V+L + + +E L SMC+ERARMLQDQF VS+NH
Sbjct: 36 KAKLIAVAVLLWVLGAAALGVFLHSYFRHAALRKAEEGLVSMCEERARMLQDQFAVSVNH 95
Query: 321 VHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQH 380
VHALAILV+TFH+ K P A+DQ TF +YT RT+FERPL SGVAYA +V+H +RE FE+Q
Sbjct: 96 VHALAILVATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQ 155
Query: 381 GWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENI 440
GW IK M+ E P+PVQDEYAPV++SQETVS+I +DMMSG+EDRENI
Sbjct: 156 GWIIKTMKHE--------------PSPVQDEYAPVVYSQETVSYIEGLDMMSGEEDRENI 201
Query: 441 LRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVP 500
LR+RASGK VLT PF+L+ SNHLGVVLTF VY+ DL DA E R+ AT GYLG S+DV
Sbjct: 202 LRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHVDLSSDAKEEDRVAATAGYLGGSFDVE 260
Query: 501 SLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVT--DTGLLRVSNLDFGDPSRKHE 558
SLVE LL QLA Q +VVNVYD TN+S P+ MYG +V+ + + LDFGDP RKH
Sbjct: 261 SLVENLLRQLAGNQELVVNVYDVTNSSNPLVMYGSEVSLGNPSPSHICMLDFGDPFRKHH 320
Query: 559 MHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAA 618
M CR++ KP +PW+AI++S GV VI +LVG+I AA +R V+ D +M ELK +AEAA
Sbjct: 321 MVCRYRNKPQLPWSAISSSSGVFVICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAA 380
Query: 619 DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVL 678
DVAKSQFLATVSHEIRTPMNGVLGML ML+DT+L + Q D+AQTA GK LISLIN+VL
Sbjct: 381 DVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVL 440
Query: 679 DQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRF 738
D+AKIE+G+L+ E VPF L +LD+V+SLFSSK+ +KGIELA+YVS+RVPE+++GDPGRF
Sbjct: 441 DRAKIEAGKLDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRF 500
Query: 739 RQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV---- 794
RQIITNLVGNSIKFT+ +GHIFV VHLAD + K + + +N HK +K
Sbjct: 501 RQIITNLVGNSIKFTE-RGHIFVQVHLADHSNLATEPKVESVANGMNG--HKDEKTAVAT 557
Query: 795 ---YNTLSGFPVVDRWKSWENFKML----DNTNTMEQLG-RIKLLVTVEDTGVGIPLEAQ 846
NTLSGF D SWENFK+L N E + ++ L+V+VEDTG+GIPL+AQ
Sbjct: 558 SVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQ 617
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
++FTPFMQADSSTSRTYGGTGIGLSIS+CLVELMGG+I FVS P GSTF+FT
Sbjct: 618 AKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQRC 677
Query: 907 ERNSL-DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
+R+++ D K P S F+GL AL++D + +RA VT+YHLQRL +A V +++LA
Sbjct: 678 DRSAIGDSKPVMLHPLPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALG 737
Query: 966 YLSDTCSTSVLP--QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
LS +S+ Q ++LI+ D W +I + L L + ++ G LPK LLA
Sbjct: 738 VLSGRNGSSLTSTKQPCMLLIESDSWGFKIDVPLRSRLLEMKQNG----PPGLPKTILLA 793
Query: 1024 TSISETDRDELKSDGIVTLLTKPLRLSVLIGC-FQEDPESSKKLQQKRKKPSLGHLLKGK 1082
+ S + D ++ TKPL+ S L C FQ + +++ SL LL GK
Sbjct: 794 AAESGKLKAHYAVDSVI---TKPLKASGLAACLFQTLGITQSSNERRDNSGSLHGLLLGK 850
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
ILVVDDN VN RVA G LKK GA V CV+ G+ A+ L PH F C MD+QMPEMDGF
Sbjct: 851 NILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGF 910
Query: 1143 QATWQIRHLENEINEQ-IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+AT QIR +E + NEQ +A +S + WH+P+LAMTADVIQA++E+C K GMD
Sbjct: 911 EATKQIRAMEAKANEQAVACDDSETDGATRAARWHLPVLAMTADVIQATHEECTKYGMDG 970
Query: 1202 YVSKPFEDEQLYTAVARFFMSG 1223
YV+KPFE++QL+ A+ +F G
Sbjct: 971 YVTKPFEEKQLFQALQKFLDPG 992
Score = 42.0 bits (97), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 44 FLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMS-CEKKAQIFLQHSNVSHNQLHALAT 102
LW+LG +G FL S A + + EEG +S CE++A++ VS N +HALA
Sbjct: 45 LLWVLGAAALG--VFLHSYFRHAAL-RKAEEGLVSMCEERARMLQDQFAVSVNHVHALAI 101
Query: 103 LFSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAED 153
L + DQ T L +G+ A +V + ++ F++Q W+ +
Sbjct: 102 LVATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQGWIIKT 161
Query: 154 VKQMDQCPVED 164
+K + PV+D
Sbjct: 162 MKH-EPSPVQD 171
>gi|118790698|tpd|FAA00250.1| TPA: histidine kinase [Oryza sativa Japonica Group]
gi|222625684|gb|EEE59816.1| hypothetical protein OsJ_12359 [Oryza sativa Japonica Group]
Length = 1005
Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/1000 (53%), Positives = 681/1000 (68%), Gaps = 65/1000 (6%)
Query: 261 AGK----WRMKI------LVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARML 310
AGK WR+K+ +V +VL A+ L W + + +E L MC+ERARML
Sbjct: 25 AGKGRRWWRVKVKLSTVAVVAWVLASAALWAGLHWRFRRAALHKAEEALVCMCEERARML 84
Query: 311 QDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLH 370
QDQF VS+NHVHALAILV+TFH+ KHP A+DQ TF Y RT+FERPL SGVAYA +V+H
Sbjct: 85 QDQFAVSVNHVHALAILVATFHYDKHPPALDQDTFAVYAARTSFERPLLSGVAYAQRVVH 144
Query: 371 SEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDM 430
++RE FE+Q GW IK M+ E P+P QDEYAPVI+SQET+S+I +D+
Sbjct: 145 ADRESFERQQGWIIKTMKHE--------------PSPAQDEYAPVIYSQETISYIEGLDV 190
Query: 431 MSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATL 490
MSG+EDRENILRARA+GK VLT PF+L+ SNHLGVVLTF VY DLP D E R+ AT
Sbjct: 191 MSGEEDRENILRARATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPNDTAVEDRVAATA 249
Query: 491 GYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSN--- 547
GYLG ++DV SLVE LL QLA Q +VVNVYD TN S P+ MYG +V G+ S+
Sbjct: 250 GYLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNHSNPLVMYGSEVP-LGIPSPSHTYT 308
Query: 548 LDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHE 607
LDFGDP RKH+M CR++ K V W+AI GV VI +LVG+I +AA +R V+ D +
Sbjct: 309 LDFGDPLRKHQMVCRYRNKLHVSWSAITTPSGVFVICMLVGYIIYAAWSRYDNVKEDCRK 368
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
M LK RAEAAD+AKSQFLATVSHEIRTPMNGVLGML ML+DTEL + Q DYAQTA G
Sbjct: 369 MEALKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVCG 428
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
K LISLIN+VLD+AKIE+G+++ E VPF L +LD+V+SLFSSK+ +KGIELA+YVS+RV
Sbjct: 429 KALISLINEVLDRAKIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERV 488
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
PE+++GDPGRFRQIITNLVGNSIKFT+ +GHIFV VHLAD + K + + +N
Sbjct: 489 PEILLGDPGRFRQIITNLVGNSIKFTE-RGHIFVQVHLADHSNLATEAKIEPVVNGMNG- 546
Query: 788 QHKSDKV-------YNTLSGFPVVDRWKSWENFKMLDNTNTME-----QLGRIKLLVTVE 835
HK + + +NTLSGF D +WENFK+L + E ++ L+V+VE
Sbjct: 547 -HKDEAIAIPTSGSHNTLSGFEAADSRNNWENFKLLLSYEKNEMPYESDSDKVTLVVSVE 605
Query: 836 DTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGS 895
DTG+GIPL AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CLVE+MGG+I FVS P GS
Sbjct: 606 DTGIGIPLHAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGS 665
Query: 896 TFSFTVTFTEGERNSL-DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
TF+FT ++N++ D K P S F+GL AL++D + +RA VT+YHLQRL +
Sbjct: 666 TFTFTAVLRRCDKNAISDSKTVALHPLPSSFKGLSALLVDKRPVRATVTKYHLQRLGITS 725
Query: 955 HVANSMQLACSYLSDTCSTSVLP----QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL 1010
V ++ LS +S+ Q ++LI+ D W ++ + LH L++ ++ +
Sbjct: 726 EVVGTIDPTFGVLSGRNGSSLTSIGKKQPCMLLIESDSWGPQMDVSLHARLQEMKQSDRI 785
Query: 1011 EISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC-FQ---------EDP 1060
+ LPK+FLL S +E+D+ + K + +++ KPL+ S L C FQ E
Sbjct: 786 HV---LPKVFLL--SAAESDKVK-KIHAVDSVIPKPLKASALAACLFQALGITQPSHEKR 839
Query: 1061 ESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
+ S L + SL LL GK ILVVDDN VN RVA G LKK+GA V CV+ G+ A+
Sbjct: 840 DDSGSLHGRDGSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSL 899
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
L PH FD C MD+QMPEMDGF+AT QIR +E + NEQ ES +E+ WH+PIL
Sbjct: 900 LQVPHKFDLCLMDIQMPEMDGFEATRQIRAMEGKANEQADDSESGSEIAAKTAKWHLPIL 959
Query: 1181 AMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
AMTADVIQA++E+C KCGMD YVSKPFE++QL+ AV +F
Sbjct: 960 AMTADVIQATHEECTKCGMDGYVSKPFEEKQLFQAVQKFL 999
>gi|357521451|ref|XP_003631014.1| Histidine kinase [Medicago truncatula]
gi|355525036|gb|AET05490.1| Histidine kinase [Medicago truncatula]
Length = 1029
Score = 1001 bits (2588), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/1039 (52%), Positives = 708/1039 (68%), Gaps = 82/1039 (7%)
Query: 240 QQRQMILQQKQQQQTPHPP----RSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRR 295
Q + L K Q+QT + ++ W +K++ +++LL IS ++ + +RR
Sbjct: 10 QNQHHPLASKLQEQTGNKRYTFIQAHRAWLLKLMFLWILLMALISRIIYSKMDVGTKVRR 69
Query: 296 KETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFE 355
KE L S+CD+RARMLQDQF+VS+NHVHALAILVSTFH+ ++PSA+DQ+TF EYT RTAFE
Sbjct: 70 KEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFE 129
Query: 356 RPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPV 415
RPL SGVAYA +V++SEREQFEKQHG IK ME E +PV+DEYAPV
Sbjct: 130 RPLLSGVAYAQRVVNSEREQFEKQHGVVIKTMERE--------------ASPVRDEYAPV 175
Query: 416 IFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTD 475
IF+QETVS++ SIDMMSG+EDRENI+RARA+GK VLT PF+LL S+HLGVVLTF VY +
Sbjct: 176 IFAQETVSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSK 235
Query: 476 LPQDATPEQRIEATLG--------------------------YLGASYDVPSLVEKLLHQ 509
LP + T E+ I+AT G Y+G S+DV SLVE LL Q
Sbjct: 236 LPPNPTTEELIKATAGVIDTTSIIELKKTVSVTRLVFGYILLYVGGSFDVESLVENLLGQ 295
Query: 510 LASKQTIVVNVYDTTNASAPINMYGPDVT--DTGLLRVSNLDFGDPSRKHEMHCRFKQKP 567
LA Q I+VNVYD TN+S P+ MYG D L+ S LDFGDP RKH+M CR+ QK
Sbjct: 296 LAGHQAILVNVYDVTNSSDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKA 355
Query: 568 PVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLA 627
P WTA++ +I VI LL+G+I + A N I +VE+D+HEM ELK RAEAADVAKSQFLA
Sbjct: 356 PPNWTALSTAILFFVILLLIGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLA 415
Query: 628 TVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR 687
TVSHEIRTPMNG+LGML +L+ TEL++ Q DYAQTA GK LI+LIN+VLD+AKIE+G+
Sbjct: 416 TVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGK 475
Query: 688 LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVG 747
LE E VPF L +LD+VLSLFS K+ KG+ELA++VSD+VP++V+GDPGRFRQI+TNLVG
Sbjct: 476 LELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVG 535
Query: 748 NSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYN--TLSGFPVVD 805
NS+KFT+ +GHIFV VHL+++ + + K + + + YN TLSG+ D
Sbjct: 536 NSVKFTE-RGHIFVKVHLSENRKPVTNGKHETYRNGGSEEVVHASGGYNLKTLSGYEAAD 594
Query: 806 RWKSWENFKML------------DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
+W+NF L + E ++ L+V VEDTG+GIP AQ RIF PF
Sbjct: 595 ERNNWDNFNHLIADEEFFCDASTKKVASNEFYEQVTLMVCVEDTGIGIPFSAQDRIFMPF 654
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL-D 912
+QADSSTSR YGGTGIGLSIS+CLVELMGG+I F+S P GSTFSFT F ++N + +
Sbjct: 655 VQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITE 714
Query: 913 PKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS-DTC 971
K Y S FRGL+A+V+D K +RA VTRYHL+RL + V VAN++ A S +
Sbjct: 715 VKKVNYEDLPSSFRGLKAVVVDGKPVRAAVTRYHLKRLGIQVKVANAINKAVSLCGKNGA 774
Query: 972 STSVLPQLALVLIDKDVWD-KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
S++ L Q ++ ++KD W E G+ + ++Q K I + +P++ LLAT+IS +
Sbjct: 775 SSTGLFQPDIIFVEKDSWVCGEDGI---FSVRQLDWKQNGHIFK-MPQMILLATNISNDE 830
Query: 1031 RDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP----SLGHLLKGKQIL 1085
D+ KS G T++ KPLR S++ C Q+ + KK Q ++ P S+ LL GK+IL
Sbjct: 831 FDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKEMPNGSTSVRSLLFGKKIL 890
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
VVDDN+VNRRVA GALK GA V C D G+AA++ L PH FDACFMD+QMPEMDGF+AT
Sbjct: 891 VVDDNVVNRRVAAGALKNFGADVKCADSGKAALEMLQFPHKFDACFMDIQMPEMDGFEAT 950
Query: 1146 WQIRHLENEINEQIAS--GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
+IR +E NE+ S GE +E +H+PILAMTADVI A+ E+C+KCGMD YV
Sbjct: 951 RRIREMERTANEETNSECGERKSE-------FHLPILAMTADVIHATYEECLKCGMDGYV 1003
Query: 1204 SKPFEDEQLYTAVARFFMS 1222
SKPFE+E LY AVA+FF +
Sbjct: 1004 SKPFEEENLYQAVAKFFQT 1022
Score = 41.2 bits (95), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
L FLW+L ++ I + D G V +E G + C+++A++ +VS N +HALA
Sbjct: 42 LMFLWILLMALISRIIYS-KMDVGTKVRRKEVLGSL-CDQRARMLQDQFSVSVNHVHALA 99
Query: 102 TLFSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAE 152
L S DQ + T L +G+ A +V S++++F+KQ + +
Sbjct: 100 ILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSEREQFEKQHGVVIK 159
Query: 153 DVKQMDQCPVED 164
+++ + PV D
Sbjct: 160 TMER-EASPVRD 170
>gi|108710768|gb|ABF98563.1| cytokinin receptor CRE1b, putative, expressed [Oryza sativa Japonica
Group]
Length = 1013
Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/1007 (53%), Positives = 680/1007 (67%), Gaps = 71/1007 (7%)
Query: 261 AGK----WRMKI------LVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARML 310
AGK WR+K+ +V +VL A+ L W + + +E L MC+ERARML
Sbjct: 25 AGKGRRWWRVKVKLSTVAVVAWVLASAALWAGLHWRFRRAALHKAEEALVCMCEERARML 84
Query: 311 QDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLH 370
QDQF VS+NHVHALAILV+TFH+ KHP A+DQ TF Y RT+FERPL SGVAYA +V+H
Sbjct: 85 QDQFAVSVNHVHALAILVATFHYDKHPPALDQDTFAVYAARTSFERPLLSGVAYAQRVVH 144
Query: 371 SEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDM 430
++RE FE+Q GW IK M+ E P+P QDEYAPVI+SQET+S+I +D+
Sbjct: 145 ADRESFERQQGWIIKTMKHE--------------PSPAQDEYAPVIYSQETISYIEGLDV 190
Query: 431 MSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATL 490
MSG+EDRENILRARA+GK VLT PF+L+ SNHLGVVLTF VY DLP D E R+ AT
Sbjct: 191 MSGEEDRENILRARATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPNDTAVEDRVAATA 249
Query: 491 GYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSN--- 547
GYLG ++DV SLVE LL QLA Q +VVNVYD TN S P+ MYG +V G+ S+
Sbjct: 250 GYLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNHSNPLVMYGSEVP-LGIPSPSHTYT 308
Query: 548 LDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHE 607
LDFGDP RKH+M CR++ K V W+AI GV VI +LVG+I +AA +R V+ D +
Sbjct: 309 LDFGDPLRKHQMVCRYRNKLHVSWSAITTPSGVFVICMLVGYIIYAAWSRYDNVKEDCRK 368
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
M LK RAEAAD+AKSQFLATVSHEIRTPMNGVLGML ML+DTEL + Q DYAQTA G
Sbjct: 369 MEALKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVCG 428
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
K LISLIN+VLD+AKIE+G+++ E VPF L +LD+V+SLFSSK+ +KGIELA+YVS+RV
Sbjct: 429 KALISLINEVLDRAKIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERV 488
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFT-------QDKGHIFVSVHLADDVRSKVDVKDKVL 780
PE+++GDPGRFRQIITNLVGNSIK T ++GHIFV VHLAD + K + +
Sbjct: 489 PEILLGDPGRFRQIITNLVGNSIKITIFTLSQFTERGHIFVQVHLADHSNLATEAKIEPV 548
Query: 781 EKSLNSVQHKSDKV-------YNTLSGFPVVDRWKSWENFKMLDNTNTME-----QLGRI 828
+N HK + + +NTLSGF D +WENFK+L + E ++
Sbjct: 549 VNGMNG--HKDEAIAIPTSGSHNTLSGFEAADSRNNWENFKLLLSYEKNEMPYESDSDKV 606
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
L+V+VEDTG+GIPL AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CLVE+MGG+I FV
Sbjct: 607 TLVVSVEDTGIGIPLHAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFV 666
Query: 889 SEPGTGSTFSFTVTFTEGERNSL-DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHL 947
S P GSTF+FT ++N++ D K P S F+GL AL++D + +RA VT+YHL
Sbjct: 667 SRPLVGSTFTFTAVLRRCDKNAISDSKTVALHPLPSSFKGLSALLVDKRPVRATVTKYHL 726
Query: 948 QRLEMAVHVANSMQLACSYLSDTCSTSVLP----QLALVLIDKDVWDKEIGLVLHYMLKQ 1003
QRL + V ++ LS +S+ Q ++LI+ D W ++ + LH L++
Sbjct: 727 QRLGITSEVVGTIDPTFGVLSGRNGSSLTSIGKKQPCMLLIESDSWGPQMDVSLHARLQE 786
Query: 1004 QRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC-FQ----- 1057
++ + + LPK+FLL S +E+D+ + K + +++ KPL+ S L C FQ
Sbjct: 787 MKQSDRIHV---LPKVFLL--SAAESDKVK-KIHAVDSVIPKPLKASALAACLFQALGIT 840
Query: 1058 ----EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDC 1113
E + S L + SL LL GK ILVVDDN VN RVA G LKK+GA V CV+
Sbjct: 841 QPSHEKRDDSGSLHGRDGSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVES 900
Query: 1114 GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVG 1173
G+ A+ L PH FD C MD+QMPEMDGF+AT QIR +E + NEQ ES +E+
Sbjct: 901 GKDALSLLQVPHKFDLCLMDIQMPEMDGFEATRQIRAMEGKANEQADDSESGSEIAAKTA 960
Query: 1174 LWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
WH+PILAMTADVIQA++E+C KCGMD YVSKPFE++QL+ AV +F
Sbjct: 961 KWHLPILAMTADVIQATHEECTKCGMDGYVSKPFEEKQLFQAVQKFL 1007
>gi|162461543|ref|NP_001105913.1| histidine kinase [Zea mays]
gi|89242037|dbj|BAE80689.1| histidine kinase [Zea mays]
Length = 996
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/1002 (53%), Positives = 679/1002 (67%), Gaps = 56/1002 (5%)
Query: 254 TPHPPRSAGK-------WRMKI------LVVFVLLGIAISVWLFWLLKEKMHLRRKETLA 300
P P AGK W +K ++V+VL A+ V+L + + +E L
Sbjct: 16 APVPAEEAGKDAEEGGGWTVKAKLIAAAVLVWVLGSAALWVFLHSYFRHAALRKAEEALV 75
Query: 301 SMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTS 360
SMC+ERARMLQDQF VS+NHVHALAILV+TFH+ KHP A+DQ TF +YT RT+FERPL S
Sbjct: 76 SMCEERARMLQDQFAVSVNHVHALAILVATFHYEKHPPALDQNTFADYTARTSFERPLLS 135
Query: 361 GVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQE 420
GVAYA +V+H++RE FE+ GW IK M+ E P+P QDEYAPV++SQE
Sbjct: 136 GVAYAQRVVHADREGFERHQGWIIKTMKHE--------------PSPAQDEYAPVVYSQE 181
Query: 421 TVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDA 480
TVS+I +DMMSG+EDRENILR+RASGK VLT PF+L+ SNHLGVVLTF VY+ DLP DA
Sbjct: 182 TVSYIEGLDMMSGEEDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHADLPSDA 240
Query: 481 TPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVT-- 538
E R+ AT GYLG ++DV SLVE LL QLA Q +V+NVYD TN S P+ MYG +V
Sbjct: 241 KEEDRVAATAGYLGGAFDVESLVENLLRQLAGNQELVINVYDVTNISNPLVMYGSEVPLG 300
Query: 539 DTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRI 598
+ + LDFGDP RKH M CR++ KP VPW+AI+ GV VI +LVG+I AA +R
Sbjct: 301 NPSPSHICMLDFGDPFRKHHMVCRYRNKPHVPWSAISTPSGVFVICMLVGYIAGAAWSRY 360
Query: 599 AQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLD 658
V+ D +M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML ML+DT+L + Q D
Sbjct: 361 DNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRD 420
Query: 659 YAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIE 718
+AQTA GK LISLIN+VLD+AKIE+ +L+ E VPF L +LD+V+SLFSSK+ +KGIE
Sbjct: 421 FAQTAQVCGKALISLINEVLDRAKIEARKLDLESVPFDLRSILDDVISLFSSKSREKGIE 480
Query: 719 LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778
L +YVS+RVPE+++GDPGRFRQIITNLVGNSIKFT+ +GHIFV VHLAD + K +
Sbjct: 481 LDVYVSERVPEILLGDPGRFRQIITNLVGNSIKFTE-RGHIFVQVHLADHSNLATESKVE 539
Query: 779 VLEKSLNSVQHKSDKV-------YNTLSGFPVVDRWKSWENFKMLDNTNTMEQ-----LG 826
+ +N H ++K NTLSGF D SWENFK+L + E
Sbjct: 540 PVANGMNG--HTNEKTAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKSEMPYESVSD 597
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
++ L+V+VEDTG+GIPL+AQ ++FTPFMQADSSTSRTYGGTGIGLSIS+CLVELMGG+I
Sbjct: 598 KVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQIN 657
Query: 887 FVSEPGTGSTFSFTVTFTEGERNSL-DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRY 945
FVS P GSTF+FT +R+++ D K P S F+GL AL++D + +RA VT+Y
Sbjct: 658 FVSRPHVGSTFTFTAVLKRCDRSAIGDSKPVMLHPLPSSFKGLSALLVDRRPVRATVTKY 717
Query: 946 HLQRLEMAVHVANSMQLACSYLS--DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
HLQRL +A V +++LA LS + S + + Q ++LI+ D W I + L L +
Sbjct: 718 HLQRLGIACDVVATIELALGVLSGRNGSSLTSMKQPCMLLIESDSWGFNIDVSLQSRLLE 777
Query: 1004 QRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC-FQEDPES 1062
++ G + LPKI LLA + S ++ D ++ TKPL+ S L C FQ
Sbjct: 778 MKQNGHTHV---LPKIILLAAAESGKLKEHYAVDSVI---TKPLKASALAACLFQTLGIK 831
Query: 1063 SKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
++ SL LL GK ILVVDDN VN RVA G LKK GA V CV+ G+ A+ L
Sbjct: 832 QSSNERSDNSGSLYGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLH 891
Query: 1123 PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ-IASGESSAEMFGNVGLWHVPILA 1181
P+ F C MD+QMPEMDGF+AT QIR +E + NEQ +A +S + W +P+LA
Sbjct: 892 VPYKFHLCLMDIQMPEMDGFEATKQIRAMEAKANEQAVACDDSEIDGTTRAARWRLPVLA 951
Query: 1182 MTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
MTADVIQA++E+C KCGMD YV+KPFE++QL+ A+ +F G
Sbjct: 952 MTADVIQATHEECTKCGMDGYVTKPFEEKQLFQALQKFLDPG 993
>gi|13359155|dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thaliana]
Length = 1057
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/981 (53%), Positives = 681/981 (69%), Gaps = 65/981 (6%)
Query: 267 KILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAI 326
K L++++++ IS ++ + + +RR+E L SMCD+RARMLQDQF+VS+NHVHALAI
Sbjct: 106 KALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 165
Query: 327 LVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKK 386
LVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA KV++ ERE FE+QH W IK
Sbjct: 166 LVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKT 225
Query: 387 METEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARAS 446
M+ + P+PV+DEYAPVIFSQ++VS++ S+DMMSG+EDRENILRAR +
Sbjct: 226 MDRGE-------------PSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARET 272
Query: 447 GKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKL 506
GK VLT PF+LL+++HLGVVLTF VY + LP++ T E+RI AT GYLG ++DV SLVE L
Sbjct: 273 GKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENL 332
Query: 507 LHQLASKQTIVVNVYDTTNASAPINMYG--PDVTDTGLLRVSNLDFGDPSRKHEMHCRFK 564
L QLA Q IVV+VYD TNAS P+ MYG + D L S LDFGDP RKH+M CR+
Sbjct: 333 LGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYH 392
Query: 565 QKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQ 624
QK P+P + I LVG+I + A I +VE+D+HEM ELK RAEAADVAKSQ
Sbjct: 393 QKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQ 452
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FLATVSHEIRTPMNG+LGML ML+DTEL + Q DYAQTA GK LI+LIN+VLD+AKIE
Sbjct: 453 FLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIE 512
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G+LE E VPF + +LD+VLSLFS ++ KGIELA++VSD+VPE+V GD GRFRQII N
Sbjct: 513 AGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIIN 572
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV---LEKSLNSVQHKSDKVYNTLSGF 801
LVGNS+KFT+ KGHIFV VHLA+ + + + K+ + + + + V +S YNTLSG+
Sbjct: 573 LVGNSVKFTE-KGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSS--YNTLSGY 629
Query: 802 PVVDRWKSWENFKML----DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
D SW++FK L + + + ++L+V++EDTG+GIPL AQ R+F PFMQAD
Sbjct: 630 EAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQAD 689
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER----NSLDP 913
SSTSR YGGTGIGLSIS+CLVELM G+I F+S P GSTF FT + ++ N +
Sbjct: 690 SSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKK 749
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL----ACSYLSD 969
+++P S F+G++A+V+D K +RA VTRYH++RL + V V S++ A ++ +
Sbjct: 750 PNVEHLP--STFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERN 807
Query: 970 TCSTSVLPQLALVLIDKDVW------DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
PQL ++L++KD W D EI L+ R G + PK+ L A
Sbjct: 808 GSPLPTKPQLDMILVEKDSWISTEDNDSEIRLL------NSRTNGN--VHHKSPKLALFA 859
Query: 1024 TSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS---LGHLL 1079
T+I+ ++ D KS G T++ KPLR S++ C Q+ E K QQ + S L LL
Sbjct: 860 TNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLL 919
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
GK+ILVVDDN+VNRRVA GALKK GA V C + G+ A+ L PH FDACFMD+QMP+M
Sbjct: 920 TGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQM 979
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DGF+AT QIR +E E E+ ++ E WH+PILAMTADVI A+ E+C+K GM
Sbjct: 980 DGFEATRQIRMMEKEAKEK-----TNLE-------WHLPILAMTADVIHATYEECLKSGM 1027
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
D YVSKPFE+E LY +VA+ F
Sbjct: 1028 DGYVSKPFEEENLYKSVAKSF 1048
>gi|13359157|dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thaliana]
Length = 1080
Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/981 (53%), Positives = 681/981 (69%), Gaps = 65/981 (6%)
Query: 267 KILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAI 326
K L++++++ IS ++ + + +RR+E L SMCD+RARMLQDQF+VS+NHVHALAI
Sbjct: 129 KALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 188
Query: 327 LVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKK 386
LVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA KV++ ERE FE+QH W IK
Sbjct: 189 LVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKT 248
Query: 387 METEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARAS 446
M+ + P+PV+DEYAPVIFSQ++VS++ S+DMMSG+EDRENILRAR +
Sbjct: 249 MDRGE-------------PSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARET 295
Query: 447 GKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKL 506
GK VLT PF+LL+++HLGVVLTF VY + LP++ T E+RI AT GYLG ++DV SLVE L
Sbjct: 296 GKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENL 355
Query: 507 LHQLASKQTIVVNVYDTTNASAPINMYG--PDVTDTGLLRVSNLDFGDPSRKHEMHCRFK 564
L QLA Q IVV+VYD TNAS P+ MYG + D L S LDFGDP RKH+M CR+
Sbjct: 356 LGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYH 415
Query: 565 QKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQ 624
QK P+P + I LVG+I + A I +VE+D+HEM ELK RAEAADVAKSQ
Sbjct: 416 QKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQ 475
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FLATVSHEIRTPMNG+LGML ML+DTEL + Q DYAQTA GK LI+LIN+VLD+AKIE
Sbjct: 476 FLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIE 535
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G+LE E VPF + +LD+VLSLFS ++ KGIELA++VSD+VPE+V GD GRFRQII N
Sbjct: 536 AGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIIN 595
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV---LEKSLNSVQHKSDKVYNTLSGF 801
LVGNS+KFT+ KGHIFV VHLA+ + + + K+ + + + + V +S YNTLSG+
Sbjct: 596 LVGNSVKFTE-KGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSS--YNTLSGY 652
Query: 802 PVVDRWKSWENFKML----DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
D SW++FK L + + + ++L+V++EDTG+GIPL AQ R+F PFMQAD
Sbjct: 653 EAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQAD 712
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER----NSLDP 913
SSTSR YGGTGIGLSIS+CLVELM G+I F+S P GSTF FT + ++ N +
Sbjct: 713 SSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKK 772
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL----ACSYLSD 969
+++P S F+G++A+V+D K +RA VTRYH++RL + V V S++ A ++ +
Sbjct: 773 PNVEHLP--STFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERN 830
Query: 970 TCSTSVLPQLALVLIDKDVW------DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
PQL ++L++KD W D EI L+ R G + PK+ L A
Sbjct: 831 GSPLPTKPQLDMILVEKDSWISTEDNDSEIRLL------NSRTNGN--VHHKSPKLALFA 882
Query: 1024 TSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS---LGHLL 1079
T+I+ ++ D KS G T++ KPLR S++ C Q+ E K QQ + S L LL
Sbjct: 883 TNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLL 942
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
GK+ILVVDDN+VNRRVA GALKK GA V C + G+ A+ L PH FDACFMD+QMP+M
Sbjct: 943 TGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQM 1002
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DGF+AT QIR +E E E+ ++ E WH+PILAMTADVI A+ E+C+K GM
Sbjct: 1003 DGFEATRQIRMMEKEAKEK-----TNLE-------WHLPILAMTADVIHATYEECLKSGM 1050
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
D YVSKPFE+E LY +VA+ F
Sbjct: 1051 DGYVSKPFEEENLYKSVAKSF 1071
>gi|18379305|ref|NP_565277.1| histidine kinase 4 [Arabidopsis thaliana]
gi|42570645|ref|NP_973396.1| histidine kinase 4 [Arabidopsis thaliana]
gi|11595487|emb|CAC18521.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|11595489|emb|CAC18522.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|11595491|emb|CAC18523.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|20198055|gb|AAD21777.2| putative histidine kinase [Arabidopsis thaliana]
gi|82569501|gb|ABB83393.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-SSRE-GFP]
gi|82569506|gb|ABB83397.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP]
gi|330250412|gb|AEC05506.1| histidine kinase 4 [Arabidopsis thaliana]
gi|330250413|gb|AEC05507.1| histidine kinase 4 [Arabidopsis thaliana]
Length = 1057
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/981 (53%), Positives = 680/981 (69%), Gaps = 65/981 (6%)
Query: 267 KILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAI 326
K L++++++ IS ++ + + +RR+E L SMCD+RARMLQDQF+VS+NHVHALAI
Sbjct: 106 KALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 165
Query: 327 LVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKK 386
LVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA KV++ ERE FE+QH W IK
Sbjct: 166 LVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKT 225
Query: 387 METEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARAS 446
M+ + P+PV+DEYAPVIFSQ++VS++ S+DMMSG+EDRENILRAR +
Sbjct: 226 MDRGE-------------PSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARET 272
Query: 447 GKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKL 506
GK VLT PF+LL+++HLGVVLTF VY + LP++ T E+RI AT GYLG ++DV SLVE L
Sbjct: 273 GKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENL 332
Query: 507 LHQLASKQTIVVNVYDTTNASAPINMYG--PDVTDTGLLRVSNLDFGDPSRKHEMHCRFK 564
L QLA Q IVV+VYD TNAS P+ MYG + D L S LDFGDP RKH+M CR+
Sbjct: 333 LGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYH 392
Query: 565 QKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQ 624
QK P+P + I LVG+I + A I +VE+D+HEM ELK RAEAADVAKSQ
Sbjct: 393 QKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQ 452
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FLATVSHEIRTPMNG+LGML ML+DTEL + Q DYAQTA GK LI+LIN+VLD+AKIE
Sbjct: 453 FLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIE 512
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G+LE E VPF + +LD+VLSLFS ++ K IELA++VSD+VPE+V GD GRFRQII N
Sbjct: 513 AGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVPEIVKGDSGRFRQIIIN 572
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV---LEKSLNSVQHKSDKVYNTLSGF 801
LVGNS+KFT+ KGHIFV VHLA+ + + + K+ + + + + V +S YNTLSG+
Sbjct: 573 LVGNSVKFTE-KGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSS--YNTLSGY 629
Query: 802 PVVDRWKSWENFKML----DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
D SW++FK L + + + ++L+V++EDTG+GIPL AQ R+F PFMQAD
Sbjct: 630 EAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQAD 689
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER----NSLDP 913
SSTSR YGGTGIGLSIS+CLVELM G+I F+S P GSTF FT + ++ N +
Sbjct: 690 SSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKK 749
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL----ACSYLSD 969
+++P S F+G++A+V+D K +RA VTRYH++RL + V V S++ A ++ +
Sbjct: 750 PNVEHLP--STFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERN 807
Query: 970 TCSTSVLPQLALVLIDKDVW------DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
PQL ++L++KD W D EI L+ R G + PK+ L A
Sbjct: 808 GSPLPTKPQLDMILVEKDSWISTEDNDSEIRLL------NSRTNGN--VHHKSPKLALFA 859
Query: 1024 TSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS---LGHLL 1079
T+I+ ++ D KS G T++ KPLR S++ C Q+ E K QQ + S L LL
Sbjct: 860 TNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLL 919
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
GK+ILVVDDN+VNRRVA GALKK GA V C + G+ A+ L PH FDACFMD+QMP+M
Sbjct: 920 TGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQM 979
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DGF+AT QIR +E E E+ ++ E WH+PILAMTADVI A+ E+C+K GM
Sbjct: 980 DGFEATRQIRMMEKETKEK-----TNLE-------WHLPILAMTADVIHATYEECLKSGM 1027
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
D YVSKPFE+E LY +VA+ F
Sbjct: 1028 DGYVSKPFEEENLYKSVAKSF 1048
>gi|30677959|ref|NP_849925.1| histidine kinase 4 [Arabidopsis thaliana]
gi|75168993|sp|Q9C5U0.1|AHK4_ARATH RecName: Full=Histidine kinase 4; AltName: Full=Arabidopsis histidine
kinase 4; Short=AtHK4; AltName: Full=Cytokinin receptor
CYTOKININ RESPONSE 1; Short=AtCRE1; Short=Cytokinin
receptor CRE1; AltName: Full=Phosphoprotein phosphatase
AHK4; AltName: Full=Protein AUTHENTIC HIS-KINASE 4;
AltName: Full=Protein ROOT AS IN WOL 1; AltName:
Full=Protein WOODEN LEG
gi|13537200|dbj|BAB40776.1| histidine kinase [Arabidopsis thaliana]
gi|330250411|gb|AEC05505.1| histidine kinase 4 [Arabidopsis thaliana]
Length = 1080
Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/981 (53%), Positives = 680/981 (69%), Gaps = 65/981 (6%)
Query: 267 KILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAI 326
K L++++++ IS ++ + + +RR+E L SMCD+RARMLQDQF+VS+NHVHALAI
Sbjct: 129 KALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 188
Query: 327 LVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKK 386
LVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA KV++ ERE FE+QH W IK
Sbjct: 189 LVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKT 248
Query: 387 METEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARAS 446
M+ + P+PV+DEYAPVIFSQ++VS++ S+DMMSG+EDRENILRAR +
Sbjct: 249 MDRGE-------------PSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARET 295
Query: 447 GKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKL 506
GK VLT PF+LL+++HLGVVLTF VY + LP++ T E+RI AT GYLG ++DV SLVE L
Sbjct: 296 GKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENL 355
Query: 507 LHQLASKQTIVVNVYDTTNASAPINMYG--PDVTDTGLLRVSNLDFGDPSRKHEMHCRFK 564
L QLA Q IVV+VYD TNAS P+ MYG + D L S LDFGDP RKH+M CR+
Sbjct: 356 LGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYH 415
Query: 565 QKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQ 624
QK P+P + I LVG+I + A I +VE+D+HEM ELK RAEAADVAKSQ
Sbjct: 416 QKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQ 475
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FLATVSHEIRTPMNG+LGML ML+DTEL + Q DYAQTA GK LI+LIN+VLD+AKIE
Sbjct: 476 FLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIE 535
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G+LE E VPF + +LD+VLSLFS ++ K IELA++VSD+VPE+V GD GRFRQII N
Sbjct: 536 AGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVPEIVKGDSGRFRQIIIN 595
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV---LEKSLNSVQHKSDKVYNTLSGF 801
LVGNS+KFT+ KGHIFV VHLA+ + + + K+ + + + + V +S YNTLSG+
Sbjct: 596 LVGNSVKFTE-KGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSS--YNTLSGY 652
Query: 802 PVVDRWKSWENFKML----DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
D SW++FK L + + + ++L+V++EDTG+GIPL AQ R+F PFMQAD
Sbjct: 653 EAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQAD 712
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER----NSLDP 913
SSTSR YGGTGIGLSIS+CLVELM G+I F+S P GSTF FT + ++ N +
Sbjct: 713 SSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKK 772
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL----ACSYLSD 969
+++P S F+G++A+V+D K +RA VTRYH++RL + V V S++ A ++ +
Sbjct: 773 PNVEHLP--STFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERN 830
Query: 970 TCSTSVLPQLALVLIDKDVW------DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
PQL ++L++KD W D EI L+ R G + PK+ L A
Sbjct: 831 GSPLPTKPQLDMILVEKDSWISTEDNDSEIRLL------NSRTNGN--VHHKSPKLALFA 882
Query: 1024 TSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS---LGHLL 1079
T+I+ ++ D KS G T++ KPLR S++ C Q+ E K QQ + S L LL
Sbjct: 883 TNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLL 942
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
GK+ILVVDDN+VNRRVA GALKK GA V C + G+ A+ L PH FDACFMD+QMP+M
Sbjct: 943 TGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQM 1002
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DGF+AT QIR +E E E+ ++ E WH+PILAMTADVI A+ E+C+K GM
Sbjct: 1003 DGFEATRQIRMMEKETKEK-----TNLE-------WHLPILAMTADVIHATYEECLKSGM 1050
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
D YVSKPFE+E LY +VA+ F
Sbjct: 1051 DGYVSKPFEEENLYKSVAKSF 1071
>gi|357138197|ref|XP_003570684.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
Length = 970
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/986 (53%), Positives = 677/986 (68%), Gaps = 64/986 (6%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
WR V +VLL +A S L W L+ + R ++ L SMC+ERARMLQ+QF V++NHVHA
Sbjct: 11 WRRLAAVAWVLLAVACSAALHWQLRWETMERAEQRLVSMCEERARMLQEQFGVTVNHVHA 70
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
LAIL+STFH K+PSA+DQ TF +YT RT+FERPL +GVAYA ++ E+E FE+QHGW
Sbjct: 71 LAILISTFHFEKNPSAIDQDTFAKYTARTSFERPLLNGVAYAQRIFPHEKETFERQHGWN 130
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
+K M N + AP+QDEYAPVIFSQ+TVS++ +DM SG+EDRENILRA
Sbjct: 131 MKTM--------------NQEAAPLQDEYAPVIFSQDTVSYLARMDMYSGEEDRENILRA 176
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
RA+GK VLT PF+LL SNHLGVVLTFAVY DL DA+ E+R+EAT GYLG ++DV SLV
Sbjct: 177 RATGKPVLTNPFRLLGSNHLGVVLTFAVYRPDLAADASVEERVEATAGYLGGAFDVESLV 236
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLDFGDPSRKHEMHC 561
E LL +LA Q I+VNVYD TN+S P+ MYGP D GLL VS LDFGDP R+HEM C
Sbjct: 237 ENLLSKLAGNQDILVNVYDVTNSSEPMAMYGPQSPDGKVGLLHVSMLDFGDPFRRHEMRC 296
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R++QKPP+PW+AI +G VI +LVG+I AA +R +V D +M ELK +AEAADVA
Sbjct: 297 RYRQKPPMPWSAITNPLGAFVIWMLVGYIICAAWSRYDKVTEDCRKMEELKTQAEAADVA 356
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNGVLGML ML+ T+L Q D+AQTA G+ LI+LINDVLD+A
Sbjct: 357 KSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDFAQTAQMCGRALITLINDVLDRA 416
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+GRLE E VPF L ++D+V+SLFSSK+ +K IELA++V D VP++V+GDP RFRQI
Sbjct: 417 KIEAGRLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKLVVGDPWRFRQI 476
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS----VQHKSDKVYNT 797
+TNLVGN++KFT D+GH+FV V LA++ S V+ ++VL +LN V+ ++ NT
Sbjct: 477 LTNLVGNAVKFT-DRGHVFVRVCLAEN--SNVEA-NQVLNVTLNGKDGKVESTANGALNT 532
Query: 798 LSGFPVVDRWKSWENFKML--DNTNTMEQL----------GRIKLLVTVEDTGVGIPLEA 845
LSGF D SWE FK+L D + +L + L++++EDTGVGIPL A
Sbjct: 533 LSGFQAADERNSWEYFKLLLSDKESLSNELEGEKSNQNDSDHVTLMISIEDTGVGIPLHA 592
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q R+FTPFMQADSSTSR YGGTGIGLSIS+CL LMGG+I F S P GSTF+F+
Sbjct: 593 QDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAGLMGGQISFTSRPSIGSTFTFSAVVKR 652
Query: 906 GERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
++ S D K + F G++A+++D +++R+ VTRYHL RL + V V N+M +
Sbjct: 653 SCKDTSSDSKRSLSETLPTAFSGMKAILVDGRAVRSAVTRYHLNRLGIIVQVVNNMSVGI 712
Query: 965 SYLS-DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
S + + +++ I+ D W E + L L + R G + LPK+ LL
Sbjct: 713 QAFSGQNGAAEPREKPSILFIENDTWRPETDIQLLNRLHKPRMNGQVH---ELPKLILLD 769
Query: 1024 TSISETDRDELKSDGIVT-LLTKPLRLSVLIGCFQ-----EDPESSKKLQQKRKKPS-LG 1076
T SE D+D K+ I ++ KP+R S + C Q E PE ++ + +PS L
Sbjct: 770 T--SEADKD--KNGSIFNVVMCKPIRASTIASCLQQLLKVEIPER----KENQNRPSFLR 821
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
LL GK ILVVDDN VN RVA ALKK+GA V CV+ G+ A+ L PPH+FDACFMD+QM
Sbjct: 822 SLLVGKNILVVDDNKVNLRVAAAALKKYGAKVHCVESGKDAISLLQPPHHFDACFMDVQM 881
Query: 1137 PEMDGFQATWQIRHLENEINEQ---IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
PEMDGF+AT QIR +E + NE+ + S E S + WH P+LAMTADVIQA+ E+
Sbjct: 882 PEMDGFEATRQIREMEKKANEEQKKLTSTEGSTFV-----EWHSPVLAMTADVIQATYEK 936
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
CMK GMD YVSKPF++EQLY AV+R
Sbjct: 937 CMKSGMDGYVSKPFDEEQLYQAVSRL 962
>gi|297817796|ref|XP_002876781.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
gi|297322619|gb|EFH53040.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
Length = 1060
Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/972 (53%), Positives = 673/972 (69%), Gaps = 48/972 (4%)
Query: 267 KILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAI 326
K L++++++ IS ++ + + +RR+E L SMCD+RARMLQDQF+VS+NHVHALAI
Sbjct: 110 KALILWIIIVGFISSGIYQWMDDTNKVRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 169
Query: 327 LVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKK 386
LVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA KV++ ERE FE+QH W IK
Sbjct: 170 LVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKT 229
Query: 387 METEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARAS 446
M+ + P+PV+DEYAPVIFSQ+++S++ S+DMMSG+EDRENILRAR +
Sbjct: 230 MDRGE-------------PSPVRDEYAPVIFSQDSLSYLESLDMMSGEEDRENILRARET 276
Query: 447 GKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKL 506
GK VLT PF+LL+++HLGVVLTF VY + LP++ T ++RI AT GYLG ++DV SLVE L
Sbjct: 277 GKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVQERIAATAGYLGGAFDVESLVENL 336
Query: 507 LHQLASKQTIVVNVYDTTNASAPINMYG--PDVTDTGLLRVSNLDFGDPSRKHEMHCRFK 564
L QLA Q IVV+VYD TNAS P+ MYG + DT L S LDFGDP RKH+M CR+
Sbjct: 337 LGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEGDTSLSHESKLDFGDPFRKHKMICRYH 396
Query: 565 QKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQ 624
QK P+P + I LVG+I + A I +VE+D+HEM ELK RAEAADVAKSQ
Sbjct: 397 QKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQ 456
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FLATVSHEIRTPMNG+LGML ML+DTEL + Q DYAQTA GK LI+LIN+VLD+AKIE
Sbjct: 457 FLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIE 516
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G+LE E VPF + +LD+VLSLFS ++ KGIELA++VSD+VPE+V GD GRFRQII N
Sbjct: 517 AGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIIN 576
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVV 804
LVGNS+KFT+ +GHIFV VHL + + + + K + S + YNTLSG+
Sbjct: 577 LVGNSVKFTE-RGHIFVKVHLVEQSKDEAEPKTALNGVSEEMIVVSKPSSYNTLSGYEAA 635
Query: 805 DRWKSWENFKML----DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
D SW++FK L + + + ++L+V++EDTG+GIPL AQ R+ PFMQADSST
Sbjct: 636 DGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLAAQGRVLMPFMQADSST 695
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER----NSLDPKWQ 916
SR YGGTGIGLSIS+CLVELM G+I F+S P GSTF FT + ++ N L
Sbjct: 696 SRNYGGTGIGLSISKCLVELMRGQIHFISRPHIGSTFWFTAVLEKCDKCSAINHLKKPNV 755
Query: 917 QYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL----ACSYLSDTCS 972
+++P S F+G+RA+V+D K +RA VT+YH++RL + V V S++ A ++ +
Sbjct: 756 EHLP--STFKGMRAIVVDAKPVRAAVTKYHMKRLGINVDVVTSLKTAVVAAAAFGRNGSP 813
Query: 973 TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
PQL ++L++KD W + + R G + + PK+ L AT+I+ ++ D
Sbjct: 814 LPTKPQLDMILVEKDSWISTEDIDSEIRVLNSRFNGNVHLKS--PKLALFATNITNSEFD 871
Query: 1033 ELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS---LGHLLKGKQILVVD 1088
KS G T++ KPLR S++ C Q+ E K QQ + S L LL K+ILVVD
Sbjct: 872 RAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTEKKILVVD 931
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQI 1148
DN+VNRRVA GALKK GA V C + G+ A+ L PHNFDACFMD+QMP+MDGF+AT QI
Sbjct: 932 DNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHNFDACFMDIQMPQMDGFEATRQI 991
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
R +E E E+ ++ E WH+PILAMTADVI A+ E+C+K GMD YVSKPFE
Sbjct: 992 RMMEIEAKEK-----TNLE-------WHLPILAMTADVIHATYEECLKSGMDGYVSKPFE 1039
Query: 1209 DEQLYTAVARFF 1220
+E LY +VA+ F
Sbjct: 1040 EENLYKSVAKSF 1051
>gi|109631212|gb|ABG35782.1| SHK300 [Striga asiatica]
Length = 974
Score = 988 bits (2555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/986 (53%), Positives = 669/986 (67%), Gaps = 84/986 (8%)
Query: 258 PRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVS 317
PR G W M +L V S ++ + E+ +RKE L SMC++RARMLQDQF+VS
Sbjct: 35 PRILGFWIMFMLFV--------SSCVYENMDEEQKEKRKEVLVSMCEQRARMLQDQFSVS 86
Query: 318 MNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFE 377
+NHVHALAILVSTFH K+PSA+DQ+TF EYT RTAFERPL SGVAYA ++L SERE+FE
Sbjct: 87 INHVHALAILVSTFHFYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRILFSEREEFE 146
Query: 378 KQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDR 437
+QHGW I+ ME E P+PV+DEYAPVIF QETVS+I S+D+MSG+EDR
Sbjct: 147 RQHGWTIRTMEKE--------------PSPVRDEYAPVIFLQETVSYIGSLDVMSGEEDR 192
Query: 438 ENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASY 497
ENILRARA+GK VLT PF+LL S HLGVVLTF VY + LP + T E+RIEAT GYLG +
Sbjct: 193 ENILRARATGKAVLTSPFRLLNS-HLGVVLTFPVYKSKLPLNPTVEERIEATAGYLGGPF 251
Query: 498 DVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVT--DTGLLRVSNLDFGDPSR 555
DV SL+E LL QLA Q IVVNVYD TN+S + MYG + D L VS LDFGDP R
Sbjct: 252 DVESLIENLLGQLAGNQAIVVNVYDATNSSDLLIMYGHHLQHGDMSLKHVSKLDFGDPFR 311
Query: 556 KHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARA 615
KHEM CR+ Q+ P W A+ + V +I L+G++ ++A++ I +VE+D+++M ELK +A
Sbjct: 312 KHEMVCRYLQEAPTSWHALQTAALVFMIGFLIGYMAYSAVSHIVKVEDDFNKMQELKVQA 371
Query: 616 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIN 675
EAADVAKSQFLATVSHEIRTPMNG+LGMLQ+L+DTEL + Q D+AQTA G+ LI+LIN
Sbjct: 372 EAADVAKSQFLATVSHEIRTPMNGILGMLQLLLDTELSSTQRDFAQTAQGCGEALITLIN 431
Query: 676 DVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDP 735
+VLD+AKIE+G+LE E VPF L +LD+VLSLFS K+ QKGIELA++VSD+VPE+V+GDP
Sbjct: 432 EVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRQKGIELAVFVSDKVPEIVVGDP 491
Query: 736 GRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS-DKV 794
GRFRQ+I NLVGNS+KFT++ GHIFV VHL + D K + L KS +
Sbjct: 492 GRFRQVIINLVGNSVKFTEE-GHIFVQVHLTAQSKPTKDAKLENLSNGEAEATPKSYSRS 550
Query: 795 YNTLSGFPVVDRWKSWENFKMLD------------NTNTMEQLGRIKLLVTVEDTGVGIP 842
+NTLSG D SWE + LD N N + + L V VEDTG+GIP
Sbjct: 551 FNTLSGKQAADNRSSWEILRHLDEKLLYNPSSKAENDNNPKS-ESVSLTVCVEDTGIGIP 609
Query: 843 LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902
+AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CLVELMGG + F+S P GSTFSFTV
Sbjct: 610 EQAQKRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGRMSFISLPQVGSTFSFTVE 669
Query: 903 FTEGERNSLDPKWQQYVPDV--SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
F ERN ++ + + D +GLRA+V+D +RA VT+YHL+RL + S+
Sbjct: 670 FQSCERNEVNNCVSKTISDELNVALKGLRAVVVDGNPVRAAVTKYHLRRLGIQAEAIGSI 729
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVW---DKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+S++ + + L++KD W ++E E+ N P
Sbjct: 730 H--AGLISNSGKVA-----DIFLVEKDAWISGEEE------------------EMPTNRP 764
Query: 1018 KIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
K+ LLAT+I+ ++ + K+ G T++ KPLR ++ C Q+ +K Q R LG
Sbjct: 765 KMILLATNITPSESERAKAAGFAETVVMKPLRSRMVAACLQQVLGIDQKTQNGRSS-GLG 823
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
LL GK+ILVVDDN+VNRRVA GAL K GA V C + G A+ L PH+FDACFMD+QM
Sbjct: 824 RLLSGKKILVVDDNVVNRRVAAGALNKFGAEVKCAESGHEALAFLQIPHDFDACFMDIQM 883
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PEMDGF+AT IR +E + A+M NV WH+PILAMTADVI A+ ++C+K
Sbjct: 884 PEMDGFEATRLIREVEMK-----------AKMEKNVE-WHMPILAMTADVIHATLDECLK 931
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFFMS 1222
CGMD YVSKPF+++ LY AVA+FF S
Sbjct: 932 CGMDGYVSKPFQEKTLYQAVAKFFSS 957
Score = 40.0 bits (92), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 22/134 (16%)
Query: 45 LWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMS-----CEKKAQIFLQHSNVSHNQLHA 99
W++ F++ S C + D E++E R CE++A++ +VS N +HA
Sbjct: 40 FWIM-FMLFVSSCVYENMD------EEQKEKRKEVLVSMCEQRARMLQDQFSVSINHVHA 92
Query: 100 LATLF---------SESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWL 150
LA L S DQ + T L +G+ A ++ +S+++EF++Q W
Sbjct: 93 LAILVSTFHFYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRILFSEREEFERQHGWT 152
Query: 151 AEDVKQMDQCPVED 164
+++ + PV D
Sbjct: 153 IRTMEK-EPSPVRD 165
>gi|113911570|gb|ABI48271.1| histidine kinase 1 [Lotus japonicus]
gi|118140476|emb|CAL18381.1| cytokinin receptor 1 [Lotus japonicus]
gi|118140478|emb|CAL18382.1| cytokinin receptor 1 [Lotus japonicus]
Length = 993
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/982 (53%), Positives = 673/982 (68%), Gaps = 54/982 (5%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W + +L V+ ++ A ++ + + +RRKE L S+CD+RARMLQDQF+VS+NHVHA
Sbjct: 37 WFLPLLFVWFIVMAAFGACIYHKMDAETKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHA 96
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
LAILVSTFH+ ++ SA+DQ+TF EYT RTAFERPL SGVAYA +V+HSERE+FEKQHGW
Sbjct: 97 LAILVSTFHYYRNTSAIDQETFAEYTARTAFERPLMSGVAYAQRVVHSERERFEKQHGWV 156
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
IK ME P+ V+DEYA VIF+QETVS++ SIDMMSG+EDRENILRA
Sbjct: 157 IKTMERV--------------PSGVRDEYAAVIFAQETVSYLESIDMMSGEEDRENILRA 202
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
RA+GK VLT PF+LL S+HLGVVLTF VY + LP + T E+ I+A GY+G S+DV SLV
Sbjct: 203 RATGKAVLTSPFRLLDSHHLGVVLTFPVYKSKLPPEPTTEEVIKAIAGYIGGSFDVESLV 262
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVT--DTGLLRVSNLDFGDPSRKHEMHC 561
E LL QLA Q I+V VYD TN+S P+ MYG D L+ S LDFGDP RKH M C
Sbjct: 263 ENLLGQLAGNQAILVKVYDITNSSDPLIMYGSQYEEGDMSLVHESKLDFGDPYRKHHMIC 322
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R+ Q+ P W A + VI LVG+I +AA I +VE+DY+ M +LK +AEAAD+A
Sbjct: 323 RYHQQAPTNWIAYTTAFLFFVILCLVGYILYAAGTHIVKVEDDYNAMQDLKVKAEAADIA 382
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNG+LGML +L+ TEL + Q DYAQTA GK LI+LIN+VLD+A
Sbjct: 383 KSQFLATVSHEIRTPMNGILGMLGLLLRTELSSTQRDYAQTAQACGKALIALINEVLDRA 442
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+LE E VPF L +LD+VLSLFS K+ KG+ELA++VSD+VP++V+GDPGRFRQI
Sbjct: 443 KIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQI 502
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK-DKVLEKSLNSVQHKSDKVYN--TL 798
+TNLVGNS+KFT+ +GHIFV VHLA+ + ++ K + L + V H S YN TL
Sbjct: 503 VTNLVGNSVKFTE-RGHIFVKVHLAEKRQCTMNGKCETFLNGGCDDVLHVSGS-YNLKTL 560
Query: 799 SGFPVVDRWKSWENFK------------MLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
SG+ D SW+NFK + + E ++ L+V+VEDTG+GI AQ
Sbjct: 561 SGYEAADERNSWDNFKHHIADEEFFFDASVKKLASSESYEQVTLMVSVEDTGIGISFSAQ 620
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
IF PF+QADSSTSR YGGTGIGLSIS+CLVELMGG+I F+S P GSTFSFT F
Sbjct: 621 DSIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGTF 680
Query: 907 ERNS-LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
++NS D K + S FRGL+A+V+D K +RA VTRYHL+RL + VA S+ A S
Sbjct: 681 KKNSTTDMKKLNFEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVAISINKAVS 740
Query: 966 YLSDTCS-TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
S TS L Q ++ ++KD W GG+ + +P++ LLAT
Sbjct: 741 LCGKNGSLTSALFQPDIIFVEKDSW-------------VSGEDGGIFNAFKMPQMILLAT 787
Query: 1025 SISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKR---KKPSLGHLLK 1080
+I + D+ K+ G T++ KPLR S+L C Q+ + K Q + S+ LL
Sbjct: 788 NICNAEFDKAKAAGFSDTVIMKPLRASMLAACLQQVFGTGKTRQFGKDMSNGSSVRSLLC 847
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
GK+ILVVDDN+VNRRVA GALK GA V C G+AA++ L PH+FDACFMD+QMPEMD
Sbjct: 848 GKKILVVDDNLVNRRVAAGALKNFGADVKCAASGKAALEMLQYPHDFDACFMDIQMPEMD 907
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
GF+AT +IR +E E +EQ+ S S E G +H+PILAMTADVI A+ ++C+ CGMD
Sbjct: 908 GFEATRRIRMMEREASEQLKS--ESGEENGKKSEFHMPILAMTADVIHATYDKCLNCGMD 965
Query: 1201 DYVSKPFEDEQLYTAVARFFMS 1222
YVSKPFE+E LY AVA+FF S
Sbjct: 966 GYVSKPFEEENLYQAVAKFFKS 987
Score = 44.7 bits (104), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
L F+W + G+ C D V +E G + C+++A++ +VS N +HALA
Sbjct: 41 LLFVWFIVMAAFGA-CIYHKMDAETKVRRKEVLGSL-CDQRARMLQDQFSVSVNHVHALA 98
Query: 102 TLFSES---------DQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAE 152
L S DQ + T L +G+ A +V +S+++ F+KQ W+
Sbjct: 99 ILVSTFHYYRNTSAIDQETFAEYTARTAFERPLMSGVAYAQRVVHSERERFEKQHGWV-- 156
Query: 153 DVKQMDQCP 161
+K M++ P
Sbjct: 157 -IKTMERVP 164
>gi|88714405|gb|ABD49494.1| cytokinin receptor 1 [Physcomitrella patens]
Length = 1075
Score = 986 bits (2550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/1037 (51%), Positives = 686/1037 (66%), Gaps = 86/1037 (8%)
Query: 248 QKQQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERA 307
+ +Q+ + R W +++V+ A+SV +++ ++ M RR+E LA+MC+ RA
Sbjct: 59 KPKQKDSEAGSRYGHNWHTIAFIMWVVFMGAVSVSVYFAMRFDMLERRRENLANMCEGRA 118
Query: 308 RMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALK 367
RML++QF SMNHV AL L++TFH K PSA++Q+TF Y ERTAFERPL SGVAYA +
Sbjct: 119 RMLEEQFKASMNHVRALTALLTTFHLGKQPSAINQETFATYAERTAFERPLMSGVAYAER 178
Query: 368 VLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVS 427
VLH+ R FE +HGW IK+M ++++ +D DEYAP +QET+SH+ S
Sbjct: 179 VLHANRNLFESKHGWTIKEMFSKEKQ--RDF-----------DEYAPTTMTQETLSHLTS 225
Query: 428 IDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIE 487
+DMMSG+EDRENI+RAR SGKG LT PF+LL+S HLGVV TFAVY TDLP+DAT E RI+
Sbjct: 226 LDMMSGQEDRENIIRARESGKGALTNPFRLLESKHLGVVFTFAVYTTDLPEDATKEDRIK 285
Query: 488 ATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYG-PDVTDTGLLRVS 546
AT GYLG ++DV +LVE LL Q+A Q I VNVYD TN + P+ MYG +V VS
Sbjct: 286 ATAGYLGGAFDVETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGYTNVEKMQSTYVS 345
Query: 547 NLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYH 606
+LDFGDP+R+HEM CRFK+ PWTAI+ SIG+ VI LVGH+ HA+ NRI +VE +
Sbjct: 346 DLDFGDPARRHEMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDKVEENCR 405
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
ELK RA+ A +AKSQFLATVSHEIRTPMNGVLGMLQML+DT L+ AQLDYAQTA S
Sbjct: 406 IFQELKMRADDAVIAKSQFLATVSHEIRTPMNGVLGMLQMLIDTPLNPAQLDYAQTALAS 465
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
GK LI+LIN+VLDQAKIESGRLE E VPF L +LD+VLSLF K+ GIELA+YVS R
Sbjct: 466 GKALINLINEVLDQAKIESGRLEFEHVPFDLRAILDDVLSLFHGKSRASGIELAVYVSAR 525
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK----DKVLEK 782
VP++++GDPGRFRQIITNLVGNSIKFT+ GHIFV VHL +DV +D D ++
Sbjct: 526 VPKILVGDPGRFRQIITNLVGNSIKFTE-AGHIFVCVHLNEDVNMVMDGSGGDADDTMDG 584
Query: 783 SLNSVQHKSDKVY--NTLSGFPVVDRWKSWENFKML--------DNTNTMEQLGRIKLLV 832
+ S +D Y NTLSG D SWE F+ L D + + + L+V
Sbjct: 585 EVESAGPLNDMNYRFNTLSGRETADYRNSWEMFERLLAQEQSHNDTWSYSDSSDVVNLVV 644
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
+VEDTGVGIPL Q R+FTPFMQADSSTSR YGGTGIGLSISRCLVELM GE+GFVS P
Sbjct: 645 SVEDTGVGIPLHVQDRVFTPFMQADSSTSRNYGGTGIGLSISRCLVELMSGEMGFVSRPK 704
Query: 893 TGSTFSFTV------------TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRA 940
GSTF+FTV EG RNS + Q P + F+G+R LV+D + +R
Sbjct: 705 VGSTFTFTVELQRVPANIPERILREG-RNS----YLQTPPLTTCFQGMRVLVVDGRKVRC 759
Query: 941 EVTRYHLQRLEMAVHVANSMQLACSYLS-----DTCST-----SVLPQLALVLIDKDVWD 990
EVTR+HL+RL + V VA+++ A LS TCS+ S+ + ++ +DKD W
Sbjct: 760 EVTRHHLKRLGLQVEVAHTVSEAAEILSTVADQGTCSSRGSRGSLAGNIEMIFVDKDAWG 819
Query: 991 KEIGLVLHYMLK----------------QQRRKG----GLEISRNLPKIFLLATSISETD 1030
G+ +L Q R G G + +++ ++ L+ATS+++ +
Sbjct: 820 PGTGMNFRSLLGESAIGHLGYQSSRTSYQYRTSGRIPFGYPVIQSMKRMVLVATSMTDME 879
Query: 1031 RDELKSDGIV-TLLTKPLRLSVLIGCFQE-----DPESSKKLQQKRKKPSLGHLLKGKQI 1084
+K+ G V T++ KPLR S++ C ++ D ++ + + SL LL GK+I
Sbjct: 880 LGMVKASGFVDTVVRKPLRASLIAACLKQILGVGDRSRDQEQELRSGVTSLQTLLYGKRI 939
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
LVVDDN VNR+VA GAL K+GA V CV GRAA+ KL PPHNFDACFMD+QMPEMDGF+A
Sbjct: 940 LVVDDNPVNRKVAAGALHKYGAQVECVYSGRAAIQKLKPPHNFDACFMDVQMPEMDGFEA 999
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T IR + E + F HVPILAMTADVIQA++E+CM+CGMD YV+
Sbjct: 1000 TGLIR--KAEAAAAERGQAAGLPTFKR--RLHVPILAMTADVIQATSEECMRCGMDGYVA 1055
Query: 1205 KPFEDEQLYTAVARFFM 1221
KPF++ QLY AVA+ F
Sbjct: 1056 KPFDEHQLYQAVAKHFF 1072
>gi|326487932|dbj|BAJ89805.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1019
Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/940 (54%), Positives = 656/940 (69%), Gaps = 48/940 (5%)
Query: 294 RRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTA 353
+R+++LASMCDERARMLQDQFNVSMNH+ ALAILV+TFHH + PSA+ Q TF Y ERTA
Sbjct: 108 KRRDSLASMCDERARMLQDQFNVSMNHLQALAILVNTFHHSQTPSAITQATFARYAERTA 167
Query: 354 FERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETE--DQTLVQDCTPENLDPAPVQDE 411
FERPLTSGVAYA++V H+ER+QFE+Q GW IKKM + Q E PA DE
Sbjct: 168 FERPLTSGVAYAVRVTHAERDQFERQQGWSIKKMYSSPSSQGPGDAAVAEIRGPA---DE 224
Query: 412 YAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAV 471
YAPVIF+Q+ +++S DM+SG +DRENI+RAR SGKGVLT PF+LL + LGV+LT++V
Sbjct: 225 YAPVIFAQDAYKNVISFDMLSGADDRENIIRARESGKGVLTAPFQLL-NGRLGVILTYSV 283
Query: 472 YNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPIN 531
Y ++ P +A P++RI+A +GYLG +D+ +LV+KLLHQLA KQ+I+VNVYDTT PI+
Sbjct: 284 YKSEPPANARPQERIQAAVGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTTKEKPIS 343
Query: 532 MYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIF 591
MYG + T G+ S L+ GDPSR+HEMHCRF QKPP+PW AI +S+G+ VI LL+G+I
Sbjct: 344 MYGSNDTGGGMYHNSTLNSGDPSRRHEMHCRFMQKPPLPWLAITSSLGIYVIFLLIGYII 403
Query: 592 HAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
+A ++RIA+VE+D M +LK RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT+
Sbjct: 404 YATVHRIAKVEDDLQIMKDLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTD 463
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
LD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE + VP + V D++LSLF K
Sbjct: 464 LDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELDAVPLDVRLVCDDILSLFCGK 523
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
A +KG+ELA+YVSD+VP+ +IGDP R RQIITNL+GNSIKFT+ +GHI+++VH+ ++V
Sbjct: 524 AQEKGLELAVYVSDQVPQTLIGDPNRMRQIITNLMGNSIKFTE-RGHIYLTVHVVEEVMC 582
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG----- 826
+DV+ ++ YNTLSG V R SW++F++ + +L
Sbjct: 583 SLDVETEI------------QNTYNTLSGCEVAKRRLSWQSFRLFNMDLHSSELPFAPIM 630
Query: 827 --RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGE 884
I+L+++VEDTGVGIPLEAQ RIFTPFMQ S +RT+GGTGIGLSIS+CLV LM GE
Sbjct: 631 PETIRLIISVEDTGVGIPLEAQSRIFTPFMQVGPSIARTHGGTGIGLSISKCLVHLMKGE 690
Query: 885 IGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR 944
IGFVS+ GSTFSFT + N+ V F+G+ ALV+D + +RA VT+
Sbjct: 691 IGFVSKHHVGSTFSFTAVLSRARPNA-------NVNKSPGFKGVSALVVDHRPVRANVTK 743
Query: 945 YHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004
YHLQRL + + N + ++ C++ V LVL+DK+ W KE + +L +
Sbjct: 744 YHLQRLGVKTELTNDVSQVIPKMN--CASLV---TRLVLVDKETWLKE-SHSMPQLLSKL 797
Query: 1005 RRKGGLEISRNLPKIFLLAT-SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESS 1063
R K + PK+FLL + S + + + ++ KPLR S+L +
Sbjct: 798 RSKD----QSDPPKVFLLENPTNSIKSSSNISREHNLNVIMKPLRASMLEASLRRVLGGV 853
Query: 1064 KKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
K K +LG LL ++I+VVDDN VN +VA GALKK+GA V C D G+ A+
Sbjct: 854 DKAHVKNGLVGNSALGSLLHKRKIIVVDDNAVNLKVAAGALKKYGAEVICADSGKKAIAL 913
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
L PPH+FDACFMD+QMPEMDGF+AT +IR +E E+NE++ GE+ E NV W PIL
Sbjct: 914 LKPPHSFDACFMDIQMPEMDGFEATKRIRMMERELNERVERGEAPPEC-ANVRRWRTPIL 972
Query: 1181 AMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
AMTADVIQA+ E C+KC MD YVSKPFE EQLY V RFF
Sbjct: 973 AMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRFF 1012
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
+A LW++G+ ++ F S + GA + M C+++A++ NVS N L ALA
Sbjct: 82 MAMLWVVGWTLICLQVFRYS-NSGAVEKRRDSLASM-CDERARMLQDQFNVSMNHLQALA 139
Query: 102 TLF---------SESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAE 152
L S Q + L +G+ A++V ++++ +F++Q W
Sbjct: 140 ILVNTFHHSQTPSAITQATFARYAERTAFERPLTSGVAYAVRVTHAERDQFERQQGW--- 196
Query: 153 DVKQMDQCP 161
+K+M P
Sbjct: 197 SIKKMYSSP 205
>gi|109631214|gb|ABG35783.1| SHK279 [Striga asiatica]
Length = 984
Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/988 (53%), Positives = 677/988 (68%), Gaps = 65/988 (6%)
Query: 258 PRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVS 317
PR G W M +L S ++ + E+ +RKE L SMC++RARMLQDQF+VS
Sbjct: 34 PRILGFWIMAMLFA--------SSCVYEYMDEEQKEKRKEVLVSMCEQRARMLQDQFSVS 85
Query: 318 MNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFE 377
+NHVHALAILVSTFH K+PSA+DQ+TF EYT RTAFERPL SGVAYA ++L SERE+FE
Sbjct: 86 VNHVHALAILVSTFHFDKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRILLSEREEFE 145
Query: 378 KQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDR 437
+QHGW I+ ME + P+PV+DEYAPVIFSQET+S++ S+D+MSG+EDR
Sbjct: 146 RQHGWTIRTMEKK--------------PSPVRDEYAPVIFSQETLSYLGSLDVMSGQEDR 191
Query: 438 ENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASY 497
ENILRARA+GK VLT PF+LL S HLGVVLTF VY LP + T E+RI+AT GYLG ++
Sbjct: 192 ENILRARATGKAVLTNPFRLLNS-HLGVVLTFPVYKFKLPPNPTVEERIDATAGYLGGAF 250
Query: 498 DVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLDFGDPSR 555
DV SLVE LL QLA Q IVVNVYDTTN+S P+ MYG + D L VS LDFGDP R
Sbjct: 251 DVESLVENLLGQLAGNQAIVVNVYDTTNSSDPLIMYGHNSQDGDMSLKHVSKLDFGDPFR 310
Query: 556 KHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARA 615
KHEM CR+ + P W A+ + V +I L+G++ ++A++ I +VE+D+++M ELK +A
Sbjct: 311 KHEMICRYLMEAPTSWHALQTAALVFMIGFLIGYMAYSAVSHIVKVEDDFNKMQELKVQA 370
Query: 616 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIN 675
EAADVAKSQFLATVSHEIRTPMNG+LGMLQ+L+DTEL + Q D+AQTA G+ LI+LIN
Sbjct: 371 EAADVAKSQFLATVSHEIRTPMNGILGMLQLLLDTELSSTQRDFAQTAQGCGEALITLIN 430
Query: 676 DVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDP 735
+VLD+AKIE+G+LE E VPF L +LD+VLSLFS K+ QKGIELA++VSD+VPE+V+GDP
Sbjct: 431 EVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRQKGIELAVFVSDKVPEIVVGDP 490
Query: 736 GRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK-V 794
GRFRQ+I NLVGNS+KFT++ GHIFV VHLA+ + D K + + KS
Sbjct: 491 GRFRQVIINLVGNSVKFTEE-GHIFVQVHLAEQRKPTKDAKIETYSNGDSETTPKSQSWS 549
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNT---NTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+NTLSG V D S + + D T N + ++L V+VEDTG+GIP +AQ R+FT
Sbjct: 550 FNTLSGKQVADNCSSLDEEFLYDPTRDENNNAKSESVRLTVSVEDTGIGIPEQAQKRVFT 609
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
PFMQADSSTSR YGGTGIGLSIS+CLVELMGG++ F S P GST SFTV F ER+ +
Sbjct: 610 PFMQADSSTSRNYGGTGIGLSISKCLVELMGGQMSFNSRPQVGSTSSFTVEFQRSERSEV 669
Query: 912 DPKWQQYVPDVS-EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDT 970
+ +V+ +GLRA+VID K +RA VT YHL+RL + S+++ ++ +
Sbjct: 670 ICLSKSISDEVNVALKGLRAVVIDGKPVRAAVTMYHLRRLGIQSEAVGSIRIGLAFYAKH 729
Query: 971 CSTSVLPQLALVLIDKDVW---DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
S + + +++KD W ++E G ++ R+ G LPK+ LLAT+I+
Sbjct: 730 GSLNDEKVPDMFIVEKDAWISSEEEDG-----PMQLSSRQNGFNC--KLPKMILLATNIT 782
Query: 1028 ETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKR------KKPSLGHLLK 1080
T+ + K+ G T++ KPLR S++ C Q+ K+Q K LL+
Sbjct: 783 PTESNRSKTAGFADTVIMKPLRSSMVAACLQQVLGIGHKIQNSSPRNGAIAKAKAKGLLR 842
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
GK+ILVVDDN+VNRRVA GAL K GA V CV G A+ L PH+FDACFMD+QMP+MD
Sbjct: 843 GKKILVVDDNVVNRRVAAGALNKFGAEVRCVGSGHEALACLQIPHDFDACFMDIQMPQMD 902
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGN-----VGLW-HVPILAMTADVIQASNEQC 1194
GF+AT IR + ES A+M N +G W H+PILAMTADVI A+ ++C
Sbjct: 903 GFEATRLIREM-----------ESKAKMGNNNKSDGIGEWRHMPILAMTADVIHATLDEC 951
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+KCGMD YV KPF+++ LY AVA+FF S
Sbjct: 952 LKCGMDGYVPKPFKEKSLYQAVAKFFDS 979
Score = 39.7 bits (91), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 19/129 (14%)
Query: 47 LLGFVIVGSICFLLSCDGGAFVGNEEEEGRMS-----CEKKAQIFLQHSNVSHNQLHALA 101
+LGF I+ ++ F SC ++ E++E R CE++A++ +VS N +HALA
Sbjct: 36 ILGFWIM-AMLFASSCVY-EYMDEEQKEKRKEVLVSMCEQRARMLQDQFSVSVNHVHALA 93
Query: 102 TLF---------SESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAE 152
L S DQ + T L +G+ A ++ S+++EF++Q W
Sbjct: 94 ILVSTFHFDKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRILLSEREEFERQHGWT-- 151
Query: 153 DVKQMDQCP 161
++ M++ P
Sbjct: 152 -IRTMEKKP 159
>gi|357117708|ref|XP_003560605.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
Length = 997
Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/964 (53%), Positives = 666/964 (69%), Gaps = 43/964 (4%)
Query: 278 AISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHP 337
A+ + L W + + +E + MC+ERARMLQDQF VS+NHVHALAILV+TFH+ K P
Sbjct: 50 ALWLGLHWRFRRAALRKAEEGIVCMCEERARMLQDQFAVSVNHVHALAILVATFHYEKQP 109
Query: 338 SAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQD 397
A+DQ TF +YT RT+FERPL SGVAYA +V++++RE FE+Q GW IK M+ E
Sbjct: 110 PALDQDTFADYTARTSFERPLLSGVAYAQRVMNADRESFERQQGWIIKTMKHE------- 162
Query: 398 CTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKL 457
P+PVQDEYAPVI+SQETVS+I +DMMSG+EDRENILR+RA+GK VLT PF+L
Sbjct: 163 -------PSPVQDEYAPVIYSQETVSYIEGLDMMSGEEDRENILRSRATGKAVLTRPFRL 215
Query: 458 LKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIV 517
+ SNHLGVVLTF VY DLP DA E R+ AT GYLG ++DV SLVE LL QLA Q +V
Sbjct: 216 M-SNHLGVVLTFPVYLVDLPPDAKVEDRVAATAGYLGGAFDVESLVENLLRQLAGNQELV 274
Query: 518 VNVYDTTNASAPINMYGPDVT--DTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAIN 575
VNVYD TN S P+ MYG +V + LDFGDP RKH M CR++ K VPW+AI
Sbjct: 275 VNVYDVTNHSNPLVMYGSEVPLGAPSPSHICMLDFGDPFRKHHMICRYRNKHHVPWSAIT 334
Query: 576 ASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRT 635
GV VI +LVG+I +AA V+ D +M LK RAEAADVAKSQFLATVSHEIRT
Sbjct: 335 TPSGVFVICMLVGYIIYAAWTHYDNVKEDCRKMEALKKRAEAADVAKSQFLATVSHEIRT 394
Query: 636 PMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPF 695
PMNGVLGML ML+DTEL + Q DYAQTA GK LISLIN+VLD+AKIE+ +LE E VPF
Sbjct: 395 PMNGVLGMLDMLLDTELKSTQRDYAQTAQVCGKALISLINEVLDRAKIEARKLELESVPF 454
Query: 696 HLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQD 755
L +LD+V+SLFSSK+++KGIELA+YVS+RVPE+++GDPGRFRQIITNLVGNSIKFT+
Sbjct: 455 DLRSILDDVVSLFSSKSSEKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSIKFTE- 513
Query: 756 KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV-----YNTLSGFPVVDRWKSW 810
+GHIFV VHLAD + K + + +N + ++ + +NTLSGF D SW
Sbjct: 514 RGHIFVQVHLADHSNLATEAKVEPVVNGINGHKDETSTISSSVSHNTLSGFEAADSRNSW 573
Query: 811 ENFKMLDNTNTME-----QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYG 865
ENFK+L + T E + ++ L+V+VEDTG+GIP+ AQ R+FTPFMQADSSTSR YG
Sbjct: 574 ENFKLLLSYETNEMPYGSESDKVTLVVSVEDTGIGIPIHAQDRVFTPFMQADSSTSRNYG 633
Query: 866 GTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLD-PKWQQYVPDVSE 924
GTGIGLSIS+CLVELMGG+I FVS P GSTF+FT ERN++ K P S
Sbjct: 634 GTGIGLSISQCLVELMGGQINFVSRPQVGSTFTFTAVLQRCERNAISVSKSALLHPLPSS 693
Query: 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST--SVLP--QLA 980
F+GL +L++D + +RA VT+YHLQRL +A +++LA LS + + +P Q++
Sbjct: 694 FKGLSSLLVDKRPVRATVTKYHLQRLGIASKSVGTIELALGALSGRNGSLLTSMPRKQIS 753
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV 1040
++LI+ D W ++ + LH L + ++ G + P + LLA++ S+ + + D ++
Sbjct: 754 MLLIESDSWGLKMDVPLHTRLLEMKQNGSETV---FPPVILLASAESDKMKAKYAVDSVI 810
Query: 1041 TLLTKPLRLSVLIGC-FQEDPESSKKLQQKRKKPS--LGHLLKGKQILVVDDNMVNRRVA 1097
TKPL+ S L C FQ S + +++ S L LL GK ILVVDDN VN RVA
Sbjct: 811 ---TKPLKASTLAACLFQALGISITQAHREKHHDSSPLHGLLLGKNILVVDDNKVNLRVA 867
Query: 1098 EGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE 1157
G LKK+GA V CV+ G+ A+ L PH FD C MD+QMPEMDGF+AT QIR +E + ++
Sbjct: 868 AGTLKKYGAKVECVESGKDALALLQVPHKFDLCLMDIQMPEMDGFEATRQIRAMEAKAHD 927
Query: 1158 QIASG-ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
Q S A+ WH+P+LAMTADVIQA++E+C K GMD YVSKPFE++QL+ AV
Sbjct: 928 QEDDAYNSEADSTAKRAEWHLPVLAMTADVIQATHEECTKFGMDGYVSKPFEEKQLFQAV 987
Query: 1217 ARFF 1220
+F
Sbjct: 988 EKFL 991
>gi|168018438|ref|XP_001761753.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
gi|162687124|gb|EDQ73509.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
Length = 1022
Score = 981 bits (2535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/1026 (51%), Positives = 681/1026 (66%), Gaps = 84/1026 (8%)
Query: 248 QKQQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERA 307
+ +Q+ + R W +++V+ A+SV +++ ++ M RR+E LA+MC+ RA
Sbjct: 24 KPKQKDSEAGSRYGHNWHTIAFIMWVVFMGAVSVSVYFAMRFDMLERRRENLANMCEGRA 83
Query: 308 RMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALK 367
RML++QF SMNHV AL L++TFH K PSA++Q+TF Y ERTAFERPL SGVAYA +
Sbjct: 84 RMLEEQFKASMNHVRALTALLTTFHLGKQPSAINQETFATYAERTAFERPLMSGVAYAER 143
Query: 368 VLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVS 427
VLH+ R FE +HGW IK+M ++++ +D DEYAP +QET+SH+ S
Sbjct: 144 VLHANRNLFESKHGWTIKEMFSKEKQ--RDF-----------DEYAPTTMTQETLSHLTS 190
Query: 428 IDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIE 487
+DMMSG+EDRENI+RAR SGKG LT PF+LL+S HLGVV TFAVY TDLP+DAT E RI+
Sbjct: 191 LDMMSGQEDRENIIRARESGKGALTNPFRLLESKHLGVVFTFAVYTTDLPEDATKEDRIK 250
Query: 488 ATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYG-PDVTDTGLLRVS 546
AT GYLG ++DV +LVE LL Q+A Q I VNVYD TN + P+ MYG +V VS
Sbjct: 251 ATAGYLGGAFDVETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGYTNVEKMQSTYVS 310
Query: 547 NLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYH 606
+LDFGDP+R+HEM CRFK+ PWTAI+ SIG+ VI LVGH+ HA+ NRI +VE +
Sbjct: 311 DLDFGDPARRHEMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDKVEENCR 370
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
ELK RA+ A +AKSQFLATVSHEIRTPMNGVLGMLQML+DT L+ AQLDYAQTA S
Sbjct: 371 IFQELKMRADDAVIAKSQFLATVSHEIRTPMNGVLGMLQMLIDTPLNPAQLDYAQTALAS 430
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
GK LI+LIN+VLDQAKIESGRLE E VPF L +LD+VLSLF K+ GIELA+YVS R
Sbjct: 431 GKALINLINEVLDQAKIESGRLEFEHVPFDLRAILDDVLSLFHGKSRASGIELAVYVSAR 490
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIK---------------FTQDKGHIFVSVHLADDVRS 771
VP++++GDPGRFRQIITNLVGNSIK FT+ GHIFV VHL +DV
Sbjct: 491 VPKILVGDPGRFRQIITNLVGNSIKVIICSKCLNLLYMSHFTE-AGHIFVCVHLNEDVNM 549
Query: 772 KVDVK----DKVLEKSLNSVQHKSDKVY--NTLSGFPVVDRWKSWENFKML--------D 817
+D D ++ + S +D Y NTLSG D SWE F+ L D
Sbjct: 550 VMDGSGGDADDTMDGEVESAGPLNDMNYRFNTLSGRETADYRNSWEMFERLLAQEQSHND 609
Query: 818 NTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCL 877
+ + + L+V+VEDTGVGIPL Q R+FTPFMQADSSTSR YGGTGIGLSISRCL
Sbjct: 610 TWSYSDSSDVVNLVVSVEDTGVGIPLHVQDRVFTPFMQADSSTSRNYGGTGIGLSISRCL 669
Query: 878 VELMGGEIGFVSEPGTGSTFSFTV------------TFTEGERNSLDPKWQQYVPDVSEF 925
VELM GE+GFVS P GSTF+FTV EG RNS + Q P + F
Sbjct: 670 VELMSGEMGFVSRPKVGSTFTFTVELQRVPANIPERILREG-RNS----YLQTPPLTTCF 724
Query: 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS-----DTCSTSVLPQLA 980
+G+R LV+D + +R EVTR+HL+RL + V VA+++ A LS TCS+ +
Sbjct: 725 QGMRVLVVDGRKVRCEVTRHHLKRLGLQVEVAHTVSEAAEILSTVADQGTCSSRGSRNIE 784
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV 1040
++ +DKD W G+ +L E+ +++ ++ L+ATS+++ + +K+ G V
Sbjct: 785 MIFVDKDAWGPGTGMNFRSLLG--------EMIQSMKRMVLVATSMTDMELGMVKASGFV 836
Query: 1041 -TLLTKPLRLSVLIGCFQE-----DPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNR 1094
T++ KPLR S++ C ++ D ++ + + SL LL GK+ILVVDDN VNR
Sbjct: 837 DTVVRKPLRASLIAACLKQILGVGDRSRDQEQELRSGVTSLQTLLYGKRILVVDDNPVNR 896
Query: 1095 RVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENE 1154
+VA GAL K+GA V CV GRAA+ KL PPHNFDACFMD+QMPEMDGF+AT IR + E
Sbjct: 897 KVAAGALHKYGAQVECVYSGRAAIQKLKPPHNFDACFMDVQMPEMDGFEATGLIR--KAE 954
Query: 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYT 1214
+ F HVPILAMTADVIQA++E+CM+CGMD YV+KPF++ QLY
Sbjct: 955 AAAAERGQAAGLPTFKR--RLHVPILAMTADVIQATSEECMRCGMDGYVAKPFDEHQLYQ 1012
Query: 1215 AVARFF 1220
AVA+ F
Sbjct: 1013 AVAKHF 1018
>gi|297737593|emb|CBI26794.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 979 bits (2530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/926 (55%), Positives = 638/926 (68%), Gaps = 105/926 (11%)
Query: 309 MLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKV 368
MLQDQF+VS+NHVHALAILVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA +V
Sbjct: 1 MLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRV 60
Query: 369 LHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSI 428
+SERE+FEKQHGW IK M+ E +P++DEYAPVIFSQETVS+I S+
Sbjct: 61 AYSERERFEKQHGWTIKTMKRE--------------ASPIRDEYAPVIFSQETVSYIESL 106
Query: 429 DMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEA 488
DMMSG+EDRENILRARA+GK VLT PF+LL S+HLGVVLTF VY + LP + T EQRIEA
Sbjct: 107 DMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTVEQRIEA 166
Query: 489 TLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDV--TDTGLLRVS 546
T GYLG ++DV SLVE LL QLA Q I+VNVYD TN+S P+ MYG D LL S
Sbjct: 167 TAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGRQYQDVDMSLLHES 226
Query: 547 NLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYH 606
LDFGDP RKH+M CR+ QK P WT++ + VI LLVG+I + A I +VE+D+H
Sbjct: 227 KLDFGDPFRKHQMICRYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFH 286
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EM ELK RAEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L + Q DYAQTA
Sbjct: 287 EMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQAC 346
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
GK LI+LIN+VLD+AKIE+G+LE E VPF+L +LD+VLSLFS K+ KG+ELA++VSD+
Sbjct: 347 GKALITLINEVLDRAKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDK 406
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VPE+VIGDPGRFRQIITNLVGNS+KFT+ +GHIFV VHLA+ ++ +D K
Sbjct: 407 VPEMVIGDPGRFRQIITNLVGNSVKFTE-RGHIFVQVHLAEHTKALMDAK---------- 455
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ S+KV L+V+VEDTG+GIPL AQ
Sbjct: 456 AETSSEKV----------------------------------TLMVSVEDTGIGIPLRAQ 481
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+FTPFMQADSSTSR YGGTGIGLSIS+CLVELMGG+I F+S P GSTFSFT F
Sbjct: 482 GRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIKFISRPQIGSTFSFTADFGR- 540
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ--LAC 964
D + +RA VT+YHL+RL + V VANS++ +A
Sbjct: 541 --------------------------FDGRPVRAIVTKYHLKRLGILVEVANSIKKAVAI 574
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYML---KQQRRKGGLEISRNLPKIFL 1021
+ + + ++ Q ++L++KD W E L+ L KQ R + LPK+ L
Sbjct: 575 TGKNGSLTSGSGNQPDMILVEKDSWISEEDADLNLRLLDWKQNRH------TLKLPKMIL 628
Query: 1022 LATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRK----KPSLG 1076
LAT+IS + D+ K+ G T++ KPLR S++ C Q+ KK QQ + L
Sbjct: 629 LATNISSAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGLGKKRQQGKDMLNGSAFLQ 688
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
LL GK+ILVVDDN VNRRVA GALKK GA V C + G+AA+ L PHNFDACFMD+QM
Sbjct: 689 SLLCGKKILVVDDNKVNRRVAAGALKKFGADVECAESGKAALQLLQLPHNFDACFMDIQM 748
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PEMDGF+AT +IR +E++ NEQ+ +G + E G WHVPILAMTADVI A+ ++C+K
Sbjct: 749 PEMDGFEATRRIRLIESKANEQM-NGGCTPEGAATKGEWHVPILAMTADVIHATYDKCLK 807
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFFMS 1222
CGMD YVSKPFE+E LY AVA+FF S
Sbjct: 808 CGMDGYVSKPFEEENLYQAVAKFFKS 833
>gi|218193648|gb|EEC76075.1| hypothetical protein OsI_13298 [Oryza sativa Indica Group]
Length = 923
Score = 977 bits (2526), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/942 (54%), Positives = 652/942 (69%), Gaps = 55/942 (5%)
Query: 309 MLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKV 368
MLQDQF VS+NHVHALAILV+TFH+ KHP A+DQ TF Y RT+FERPL SGVAYA +V
Sbjct: 1 MLQDQFAVSVNHVHALAILVATFHYDKHPPALDQDTFAVYAARTSFERPLLSGVAYAQRV 60
Query: 369 LHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSI 428
+H++RE FE+Q GW IK M+ E P+P QDEYAPVI+SQET+S+I +
Sbjct: 61 VHADRESFERQQGWIIKTMKHE--------------PSPAQDEYAPVIYSQETISYIEGL 106
Query: 429 DMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEA 488
D+MSG+EDRENILRARA+GK VLT PF+L+ SNHLGVVLTF VY DLP D E R+ A
Sbjct: 107 DVMSGEEDRENILRARATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPNDTAVEDRVAA 165
Query: 489 TLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSN- 547
T GYLG ++DV SLVE LL QLA Q +VVNVYD TN S P+ MYG +V G+ S+
Sbjct: 166 TAGYLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNHSNPLVMYGSEVP-LGIPSPSHT 224
Query: 548 --LDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDY 605
LDFGDP RKH+M CR++ K V W+AI GV VI +LVG+I +AA +R V+ D
Sbjct: 225 YTLDFGDPLRKHQMVCRYRNKLHVSWSAITTPSGVFVICMLVGYIIYAAWSRYDNVKEDC 284
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
+M LK RAEAAD+AKSQFLATVSHEIRTPMNGVLGML ML+DTEL + Q DYAQTA
Sbjct: 285 RKMEALKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQV 344
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
GK LISLIN+VLD+AKIE+G+++ E VPF L +LD+V+SLFSSK+ +KGIELA+YVS+
Sbjct: 345 CGKALISLINEVLDRAKIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSE 404
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
RVPE+++GDPGRFRQIITNLVGNSIKFT+ +GHIFV VHLAD + K + + +N
Sbjct: 405 RVPEILLGDPGRFRQIITNLVGNSIKFTE-RGHIFVQVHLADHSNLATEAKIEPVVNGMN 463
Query: 786 SVQHKSDKV-------YNTLSGFPVVDRWKSWENFKMLDNTNTME-----QLGRIKLLVT 833
HK + + +NTLSGF D +WENFK+L + E ++ L+V+
Sbjct: 464 G--HKDEAIAIPTSGSHNTLSGFEAADSRNNWENFKLLLSYEKNEMPYESDSDKVTLVVS 521
Query: 834 VEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGT 893
VEDTG+GIPL AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CLVE+MGG+I FVS P
Sbjct: 522 VEDTGIGIPLHAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLV 581
Query: 894 GSTFSFTVTFTEGERNSL-DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM 952
GSTF+FT ++N++ D K P S F+GL AL++D + +RA VT+YHLQRL +
Sbjct: 582 GSTFTFTAVLRRCDKNAISDSKTVALHPLPSSFKGLSALLVDKRPVRATVTKYHLQRLGI 641
Query: 953 AVHVANSMQLACSYLSDTCSTSVLP----QLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008
V ++ LS +S+ Q ++LI+ D W ++ + LH L++ ++
Sbjct: 642 TSEVVGTIDPTFGVLSGRNGSSLTSIGKKQPCMLLIESDSWGPQMDVSLHARLQEMKQSD 701
Query: 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC-FQ---------E 1058
+ + LPK+FLL S +E+D+ + K + +++ KPL+ S L C FQ E
Sbjct: 702 RIHV---LPKVFLL--SAAESDKVK-KIHAVDSVIPKPLKASALAACLFQALGITQPSHE 755
Query: 1059 DPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
+ S L + SL LL GK ILVVDDN VN RVA G LKK+GA V CV+ G+ A+
Sbjct: 756 KRDDSGSLHGRDGSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDAL 815
Query: 1119 DKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
L PH FD C MD+QMPEMDGF+AT QIR +E + NEQ ES +E+ WH+P
Sbjct: 816 SLLQVPHKFDLCLMDIQMPEMDGFEATRQIRAMEGKANEQADDSESGSEIAAKTAKWHLP 875
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
ILAMTADVIQA++E+C KCGMD YVSKPFE++QL+ AV +F
Sbjct: 876 ILAMTADVIQATHEECTKCGMDGYVSKPFEEKQLFQAVQKFL 917
>gi|302768761|ref|XP_002967800.1| cytokinin receptor [Selaginella moellendorffii]
gi|300164538|gb|EFJ31147.1| cytokinin receptor [Selaginella moellendorffii]
Length = 965
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/977 (53%), Positives = 651/977 (66%), Gaps = 105/977 (10%)
Query: 294 RRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTA 353
RR+ETLA+MC ERA MLQDQFN SMNHV +L LV+TFH K PSA+DQ +T +
Sbjct: 44 RRRETLANMCKERAWMLQDQFNSSMNHVRSLTALVTTFHLAKQPSALDQARQFFWT---S 100
Query: 354 FERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYA 413
FERPL SGVAYA KV H +R FE++ GW IK+M + N A DEYA
Sbjct: 101 FERPLMSGVAYAHKVEHWQRRAFEEEMGWSIKEMRS------------NAPRAQNLDEYA 148
Query: 414 PVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYN 473
P + SQ T++H+ S+DMMSG+EDRENILR+RASGKG LT PF+LL+S+HLGVVLTF VY
Sbjct: 149 PTVLSQNTLAHLASVDMMSGEEDRENILRSRASGKGALTSPFRLLESDHLGVVLTFTVYK 208
Query: 474 TDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMY 533
TDLP DATP QRI+AT GY+G ++D SLVE LL QL+ QTI+VNV D TN S P+ MY
Sbjct: 209 TDLPDDATPAQRIQATAGYVGGAFDFESLVENLLRQLSESQTIIVNVNDVTNKSNPLVMY 268
Query: 534 GPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHA 593
GP++ D + V L+FGDP RKHEM CRF ++ V WTAI + G+VVI LLV IF+A
Sbjct: 269 GPNIPDGNEIEVCQLEFGDPFRKHEMRCRFNKEASVVWTAITTTFGIVVIVLLVAQIFYA 328
Query: 594 AINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 653
A NRIA+VE DY +M +LK RAE+ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD
Sbjct: 329 AGNRIAKVEEDYRKMEDLKVRAESADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 388
Query: 654 AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKAN 713
+ Q DYA TA SGK LI LIN+VLDQAKIESGR+E E VPF L +LD++L+LFS++
Sbjct: 389 STQRDYAHTALESGKQLIKLINEVLDQAKIESGRMELETVPFKLRTILDDILTLFSAENK 448
Query: 714 QKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773
KGIELA YVS+RVP+VV+GDP R QI+TNLVGNSIKFT D+GHIFVSVHL +DV++ +
Sbjct: 449 DKGIELAAYVSERVPDVVLGDPVRLHQIVTNLVGNSIKFT-DRGHIFVSVHLEEDVKAAM 507
Query: 774 DVKDKVLEKSLNSVQHKSDKVY--------NTLSGFPVVDRWKSWENFKMLDN------T 819
+ + K + Q SDK+ +TLSG DR +WE FK++ T
Sbjct: 508 SAQCEACSKQVTETQDHSDKLNTVDAAGSCSTLSGLEAADRRNNWETFKLILKQEKSRLT 567
Query: 820 NTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVE 879
+ + +KL+ +VEDTGVGIP+ AQ R+F+PFMQADSSTSR YGGTGIGLSIS+CLVE
Sbjct: 568 THKQPVDTVKLVFSVEDTGVGIPVHAQERVFSPFMQADSSTSRNYGGTGIGLSISKCLVE 627
Query: 880 LMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP-------KWQQY----VPDVSEFRGL 928
LM GEIGFVS G G+TF FTV F G+ +L+ K Q+ P ++ GL
Sbjct: 628 LMKGEIGFVSSLGVGTTFWFTVNFKVGDLEALEAAHSAECSKQQRAAHSSTPLTTQLSGL 687
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
+ALV+D + +R+EVTRYHL+RL + V VA+ + A ++ L ++LIDKD
Sbjct: 688 KALVVDGRPVRSEVTRYHLRRLGIQVDVASDVSSALAHQRS-------KNLDMILIDKDA 740
Query: 989 WDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPL 1047
W GL +K+ G ++ PK+ LLA + D + K+ G ++ KPL
Sbjct: 741 WGSSTGLSYPSKIKE----AGPTLA---PKLVLLAF---DDDEHKAKAAGFSDNVIKKPL 790
Query: 1048 RLSVLIGCFQEDPESSKKLQQKRK------------------------KPSLGHLLKGKQ 1083
R S + E + L KR+ +L LL GK
Sbjct: 791 RASYIANHL----EKALGLDLKRRTRESSTPTSSSSDTSASINSGSGSSNNLHSLLTGKW 846
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
ILVVDDN VNRRVA GAL+K+GA V CV+ GR A++KL PPH FDACFMD+QMPEMDGF+
Sbjct: 847 ILVVDDNKVNRRVAAGALQKYGARVECVESGRLAIEKLEPPHKFDACFMDIQMPEMDGFE 906
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT +IR E G HVPILAMTADVIQA+ ++C +CGMDDYV
Sbjct: 907 ATRRIRCFEKR------------------GGSHVPILAMTADVIQATYDECRRCGMDDYV 948
Query: 1204 SKPFEDEQLYTAVARFF 1220
SKPFE++QLY AVA+FF
Sbjct: 949 SKPFEEKQLYRAVAKFF 965
>gi|118790708|tpd|FAA00251.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 970
Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/993 (52%), Positives = 674/993 (67%), Gaps = 66/993 (6%)
Query: 258 PRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVS 317
P + WR +VL+ +A + ++ W L+ + R +E L SMC+ERARMLQ+QF V+
Sbjct: 4 PEARSGWRNAAAAAWVLVAVACAAYMHWHLRRETMDRAEERLVSMCEERARMLQEQFGVT 63
Query: 318 MNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFE 377
+NHVHALAIL+STFH K PSA+DQ TF +YT RT+FERPL +GVAYA ++ H ERE FE
Sbjct: 64 VNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTSFERPLLNGVAYAQRIFHHEREMFE 123
Query: 378 KQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDR 437
Q GW +K M+ + AP QDEYAPVIFSQ+TVS++ IDMMSG+EDR
Sbjct: 124 NQQGWIMKTMKRQ--------------AAPPQDEYAPVIFSQDTVSYLARIDMMSGEEDR 169
Query: 438 ENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASY 497
ENILRARA+GK VLT PF+LL SNHLGVVLTFAVY L DA+ E+R+EAT GYLG ++
Sbjct: 170 ENILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVEATAGYLGGAF 229
Query: 498 DVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLDFGDPSR 555
DV SLVE LL +LA Q IVVNVYD TNAS P+ MYGP D L VS LDFGDP R
Sbjct: 230 DVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQSPDGKVSLFHVSTLDFGDPFR 289
Query: 556 KHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARA 615
HEM CR++QKPP+PW+AI +G VI +LVG+I AA +R +V D +M ELK +A
Sbjct: 290 AHEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCRKMEELKTQA 349
Query: 616 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIN 675
EAADVAKSQFLATVSHEIRTPMNGVLGML ML+ T+L Q DYAQTA G+ LI+LIN
Sbjct: 350 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLSMTQKDYAQTAQMCGRALITLIN 409
Query: 676 DVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDP 735
DVLD+AKIE+G+LE E VPF L ++D+V+SLFSSK+ +K IELA++V D VP+VVIGDP
Sbjct: 410 DVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKVVIGDP 469
Query: 736 GRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS----VQHKS 791
R+RQI+TNLVGN++KFT+ +GH+FV V LA++ SKV+ ++VL ++N V+ +
Sbjct: 470 WRYRQILTNLVGNAVKFTE-RGHVFVRVCLAEN--SKVEA-NQVLNGTMNGKDGKVETTA 525
Query: 792 DKVYNTLSGFPVVDRWKSWENFKML--DNTNTMEQL----------GRIKLLVTVEDTGV 839
+ +NTLSGF D +W+ FK+L D M++L + L++++EDTGV
Sbjct: 526 NGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCDCVTLMISIEDTGV 585
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GIPL AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CL ELMGG+I F S P GSTF+F
Sbjct: 586 GIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGSTFTF 645
Query: 900 TVTFTEGERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
+ ++ S D K + F+G++A+++D + +R VTRYHL RL + V V N
Sbjct: 646 SAVLKRSCKDTSSDSKRSLSEALPTAFKGMKAILVDGRPVRGAVTRYHLNRLGIVVKVVN 705
Query: 959 SMQLACSYLSDTCST-SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
++ + L+ +L+++ I+ D+W E ++L L + + G + LP
Sbjct: 706 NLSMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDILLLNRLHELKNNGQVH---ELP 762
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE-----DPESSKKLQQKRKK 1072
K+ LL T SE D+D S ++ KP+R S + C Q+ PE +K Q R
Sbjct: 763 KLVLLVT--SEADKDRYGS-AFDIVMYKPIRASTIASCLQQLLKVVMPE--RKDNQNR-- 815
Query: 1073 PS-LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
PS L LL GK IL+VDDN VN RVA ALKK+GA V CV+ G+ AV L PH FDACF
Sbjct: 816 PSFLRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDAVSLLQQPHCFDACF 875
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQ-----IASGESSAEMFGNVGLWHVPILAMTADV 1186
MD+QMPEMDGF+AT QIR +E + NE+ + G + E H+P+LAMTADV
Sbjct: 876 MDVQMPEMDGFEATRQIRQMEVKANEERKALDLMEGSTFVES-------HLPVLAMTADV 928
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
IQA+ E+C+K GMD YVSKPF++EQLY AV+R
Sbjct: 929 IQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 961
>gi|224029415|gb|ACN33783.1| unknown [Zea mays]
gi|413938768|gb|AFW73319.1| putative histidine kinase family protein [Zea mays]
Length = 974
Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/984 (51%), Positives = 670/984 (68%), Gaps = 50/984 (5%)
Query: 259 RSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSM 318
R+ WR +VL + S + W L+ R +E L SMC+ERARMLQ+QF V++
Sbjct: 9 RTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTV 68
Query: 319 NHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEK 378
NHVHA+AIL+STF+ K P A+DQ TF +YT RT+FERPL +GVA+A +V H ERE FE
Sbjct: 69 NHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFES 128
Query: 379 QHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRE 438
Q GW + M+ E PAP Q EYAPVIFSQ+TVS++ IDMMSG+EDRE
Sbjct: 129 QQGWVMNTMQRE--------------PAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRE 174
Query: 439 NILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYD 498
NI RAR +GK VLT PF+LL SNHLGVVLTFAVY DLP DA+ EQR+EAT+GYLG ++D
Sbjct: 175 NIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFD 234
Query: 499 VPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLDFGDPSRK 556
V SLVE LL +LA Q IVVNVYD TNAS + +YGP D L VS LDFGDP RK
Sbjct: 235 VESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRK 294
Query: 557 HEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAE 616
HEM CR++QK P+PW+AI +G VI +L+G+ AA +R +V D +M ELK +AE
Sbjct: 295 HEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAE 354
Query: 617 AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIND 676
AADVAKSQFLATVSHEIRTPMNGVLGML ML+ T+L Q DYAQTA G+ LI+LIND
Sbjct: 355 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLIND 414
Query: 677 VLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPG 736
VLD+AKIE+G+LE E VPF L ++D+V+SLFSSK+ +K IELA++V D VP+VVIGDP
Sbjct: 415 VLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPW 474
Query: 737 RFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS----VQHKSD 792
RFRQI+TNLVGN++KFT+ +GH+FV V LA++ S V+ ++VL ++N V+ ++
Sbjct: 475 RFRQILTNLVGNAVKFTE-RGHVFVRVCLAEN--SNVEA-NQVLHGAMNGKGGRVESTTN 530
Query: 793 KVYNTLSGFPVVDRWKSWENFKML-------------DNTNTMEQLGRIKLLVTVEDTGV 839
+NTLSGF DR SW+ FK+L +N+N + + L +++EDTGV
Sbjct: 531 GAFNTLSGFEAADRRNSWQYFKLLLSDKESLLDDLEGENSNQSDS-NHVTLAISIEDTGV 589
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GIPL+AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CL ELMGG+I F S P GSTF+F
Sbjct: 590 GIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 649
Query: 900 TVTFTEGERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
+ T ++ S+D + F+G++A+++D + +R+ VTRYHL+RL + + V N
Sbjct: 650 SATLKHSYKDISVDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVN 709
Query: 959 SMQLAC-SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+M ++ +T + +++ I+ D W E + L L++Q + G L
Sbjct: 710 NMNAVVKAFPGQNGATGSREKASILFIESDFWRPETDVQLLNHLREQ-KNGQLSDGH--- 765
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKPSL 1075
K+ LL T SE D+D+ S + ++ KP+R S + Q+ E +++ + + L
Sbjct: 766 KVVLLVT--SEADKDKYGSIFDI-VMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFL 822
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
LL GK ILVVDDN VN RVA ALKK+GA V+CV+ G+ A+ L PPH FDACFMD+Q
Sbjct: 823 RSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQ 882
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MPEMDGF+AT QIR +E + NE+ + +S E +H+P+LAMTADVIQA+ E+C+
Sbjct: 883 MPEMDGFEATGQIRQMELKANEERKNKLASIEG-STTAEYHLPVLAMTADVIQATYEECI 941
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARF 1219
K GMD YVSKPF++EQLY AV+R
Sbjct: 942 KSGMDGYVSKPFDEEQLYQAVSRL 965
>gi|242066054|ref|XP_002454316.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
gi|241934147|gb|EES07292.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
Length = 973
Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/983 (51%), Positives = 671/983 (68%), Gaps = 49/983 (4%)
Query: 259 RSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSM 318
R+ +WR +VL+ +A + + W + + R +E L SMC+ERARMLQ+QF V++
Sbjct: 9 RTNRRWRGLAAAAWVLIAVAGAAVMHWTQRRQSMDRAEERLVSMCEERARMLQEQFGVTV 68
Query: 319 NHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEK 378
NHVHA+AIL++TF++ K P A+D TF YT RT+FERPL +GVAYA +V H ERE FE
Sbjct: 69 NHVHAIAILIATFNYEKSPPAIDPDTFATYTARTSFERPLLNGVAYAQRVFHHEREMFES 128
Query: 379 QHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRE 438
Q GW + M+ E PAP +DEYAPVIFSQ+TVS++ IDMMSG+ED+E
Sbjct: 129 QQGWIMNTMQRE--------------PAPPRDEYAPVIFSQDTVSYLARIDMMSGEEDQE 174
Query: 439 NILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYD 498
NILRAR +GK VLT PF+LL SNHLGVVLTFAVY DLP DA+ EQR+EAT+GYLG +D
Sbjct: 175 NILRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGGFD 234
Query: 499 VPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGL-LRVSNLDFGDPSRKH 557
V SLVE LL +LA Q IVVNVYD TNAS P+ +YGP + D + L VS LDFGDP R+H
Sbjct: 235 VESLVENLLSKLAGNQDIVVNVYDVTNASEPMALYGPSILDEQVPLHVSMLDFGDPFRRH 294
Query: 558 EMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEA 617
EM CR++QKPP+PW+ I +G+ VI +L+G+ AA +R +V D +M ELK +AEA
Sbjct: 295 EMRCRYRQKPPIPWSTITNPLGLFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEA 354
Query: 618 ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDV 677
ADVAKSQFLATVSHEIRTPMNGVLGML ML+ T+L Q DYAQTA G+ LI+LINDV
Sbjct: 355 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDV 414
Query: 678 LDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGR 737
LD+AKIE+G+LE E VPF L ++D+V+SLFSSK+ +K IELA++V D VP+VV+GDP R
Sbjct: 415 LDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKVVLGDPWR 474
Query: 738 FRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS----VQHKSDK 793
FRQI+TNLVGN++KFT+ +GH+FV V LA++ + ++VL ++N V+ ++
Sbjct: 475 FRQILTNLVGNAVKFTE-RGHVFVRVCLAENSNMEA---NQVLHGTMNGKDGKVESTTNG 530
Query: 794 VYNTLSGFPVVDRWKSWENFKML-------------DNTNTMEQLGRIKLLVTVEDTGVG 840
+NTLSGF DR SW+ FK+L +N+N + + L +++EDTGVG
Sbjct: 531 AFNTLSGFEAADRRNSWQYFKLLLSNKESLLDDLEGENSN-LSDSDHVTLAISIEDTGVG 589
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
IPL+AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CL ELMGG+I F S P GSTF+F+
Sbjct: 590 IPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGSTFTFS 649
Query: 901 VTFTEGERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
T ++ S+D + F+G++A++ID + +R+ VT+YHL+RL + V V N+
Sbjct: 650 ATLKRSYKDISVDSSRSLSEALPTAFKGMKAILIDGRPVRSAVTKYHLKRLGIIVQVVNN 709
Query: 960 MQLAC-SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
M ++ +T + ++ I+ D W E + L L++ K GL + PK
Sbjct: 710 MSTVVKAFPGQNGATVSREKATMLFIESDFWRPETDVQLLNHLREH--KNGL--LSDAPK 765
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKPSLG 1076
+ LL T SE D+D S + ++ KP+R S + Q+ E K+ + + + L
Sbjct: 766 VVLLVT--SEADKDNYGSIFDI-VMCKPIRASTIASSIQQLLKVEMPKRKENQNRPSFLR 822
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
LL GK ILVVDDN VN RVA ALKK+GA V+CV+ G+ A+ L PPH+F ACFMD+QM
Sbjct: 823 SLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHSFHACFMDVQM 882
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PEMDGF+AT QIR +E + NE+ + S E V + +P+LAMTADVIQA+ E+C+K
Sbjct: 883 PEMDGFEATRQIRQMEMKANEERKNKLSLTEASTFVE-YRLPVLAMTADVIQATYEECIK 941
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GMD YVSKPF++EQL V+R
Sbjct: 942 SGMDGYVSKPFDEEQLCQVVSRL 964
>gi|162459625|ref|NP_001104859.1| histidine kinase 1 [Zea mays]
gi|12060392|dbj|BAB20583.1| histidine kinase 1 [Zea mays]
Length = 974
Score = 968 bits (2503), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/979 (51%), Positives = 664/979 (67%), Gaps = 50/979 (5%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
WR +VL + S + W L+ R +E L SMC+ERARMLQ+QF V++NHVHA
Sbjct: 14 WRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHA 73
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
+AIL+STF+ K P A+DQ TF +YT RT+FERPL +GVA+A +V H ERE FE Q GW
Sbjct: 74 IAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWV 133
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
+ M+ E PAP Q EYAPVIFSQ+TVS++ IDMMSG+EDRENI RA
Sbjct: 134 MNTMQRE--------------PAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRA 179
Query: 444 RASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLV 503
R +GK VLT PF+LL SNHLGVVLTFAVY DLP DA+ EQR+EAT+GYLG ++DV SLV
Sbjct: 180 RTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLV 239
Query: 504 EKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLDFGDPSRKHEMHC 561
E LL +LA Q IVVNVYD TNAS + +YGP D L VS LDFGDP RKHEM C
Sbjct: 240 ENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRC 299
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
R++QK P+PW+AI +G VI +L+G+ AA +R +V D +M ELK +AEAADVA
Sbjct: 300 RYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVA 359
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLAT SHEIRTPMNGVLGML ML+ T+L Q DYAQTA G+ LI+LINDVLD+A
Sbjct: 360 KSQFLATASHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDRA 419
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+LE E VPF L ++D+V+SLFSSK+ +K IELA++V D VP+VVIGDP RFRQI
Sbjct: 420 KIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQI 479
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS----VQHKSDKVYNT 797
+TNLVGN++KFT+ +GH+FV V LA++ + ++VL ++N V+ ++ +NT
Sbjct: 480 LTNLVGNAVKFTE-RGHVFVRVCLAENSNMEA---NQVLHGAMNGKGGRVESTANGAFNT 535
Query: 798 LSGFPVVDRWKSWENFKML-------------DNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
LSGF DR SW+ FK+L +N+N + R+ L +++EDTGVGIPL+
Sbjct: 536 LSGFEAADRRNSWQYFKLLLSDKESLLDDLESENSNQSDS-DRVTLAISIEDTGVGIPLQ 594
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CL ELMGG+I F S P GSTF+F+ T
Sbjct: 595 AQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLK 654
Query: 905 EGERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
++ S D + F+G++A+++D + +R+ VTRYHL+RL + + V N+M
Sbjct: 655 HSHKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAV 714
Query: 964 C-SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
++ + + +++ I+ D W E + L L++Q + G L K+ LL
Sbjct: 715 VKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQ-KNGQLSDGH---KVVLL 770
Query: 1023 ATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKPSLGHLLK 1080
T SE D+D+ S + ++ KP+R S + Q+ E +++ + + L LL
Sbjct: 771 VT--SEADKDKYGSIFDI-VMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLV 827
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
GK ILVVDDN VN RVA ALKK+GA V+CV+ G+ A+ L PPH FDACFMD+QMPEMD
Sbjct: 828 GKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMD 887
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
GF+AT QIR +E + NE+ + +S E +H+P+LAMTADVIQA+ E+C+K GMD
Sbjct: 888 GFEATGQIRQMELKANEERKNKLASIEG-STTAEYHLPVLAMTADVIQATYEECIKSGMD 946
Query: 1201 DYVSKPFEDEQLYTAVARF 1219
YVSKPF++EQLY AV+R
Sbjct: 947 GYVSKPFDEEQLYQAVSRL 965
>gi|218191539|gb|EEC73966.1| hypothetical protein OsI_08865 [Oryza sativa Indica Group]
Length = 985
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/1008 (51%), Positives = 674/1008 (66%), Gaps = 81/1008 (8%)
Query: 258 PRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVS 317
P + WR +VL+ +A + ++ W L+ + R +E L SMC+ERARMLQ+QF V+
Sbjct: 4 PEARSGWRNAAAAAWVLVAVACAAYMHWHLRRETMDRAEERLVSMCEERARMLQEQFGVT 63
Query: 318 MNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFE 377
+NHVHALAIL+STFH K PSA+DQ TF +YT RT+FERPL +GVAYA ++ H ERE FE
Sbjct: 64 VNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTSFERPLLNGVAYAQRIFHHEREMFE 123
Query: 378 KQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDR 437
Q GW +K M+ + AP QDEYAPVIFSQ+TVS++ IDMMSG+EDR
Sbjct: 124 NQQGWIMKTMKRQ--------------AAPPQDEYAPVIFSQDTVSYLARIDMMSGEEDR 169
Query: 438 ENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLG------ 491
ENILRARA+GK VLT PF+LL SNHLGVVLTFAVY L DA+ E+R+EAT G
Sbjct: 170 ENILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVEATAGCLVVVV 229
Query: 492 ---------YLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--T 540
YLG ++DV SLVE LL +LA Q IVVNVYD TNAS P+ MYGP D
Sbjct: 230 SSNQIPTNRYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQSPDGKV 289
Query: 541 GLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQ 600
L VS LDFGDP R HEM CR++QKPP+PW+AI +G VI +LVG+I AA +R +
Sbjct: 290 SLFHVSTLDFGDPFRAHEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDK 349
Query: 601 VENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
V D +M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML ML+ T+L Q DYA
Sbjct: 350 VSEDCRKMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLSMTQKDYA 409
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
QTA G+ LI+LINDVLD+AKIE+G+LE E VPF L ++D+V+SLFSSK+ +K IELA
Sbjct: 410 QTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELA 469
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
++V D VP+VVIGDP R+RQI+TNLVGN++KFT+ +GH+FV V LA++ SKV+ ++VL
Sbjct: 470 VFVCDDVPKVVIGDPWRYRQILTNLVGNAVKFTE-RGHVFVRVCLAEN--SKVEA-NQVL 525
Query: 781 EKSLNS----VQHKSDKVYNTLSGFPVVDRWKSWENFKML--DNTNTMEQL--------- 825
++N V+ ++ +NTLSGF D +W+ FK+L D M++L
Sbjct: 526 NGTMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQND 585
Query: 826 -GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGE 884
+ L++++EDTGVGIPL AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CL ELMGG+
Sbjct: 586 CDCVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 645
Query: 885 IGFVSEPGTGSTFSFTVTFTEGERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
I F S P GSTF+F+ ++ S D K + F+G++A+++D + +R VT
Sbjct: 646 ISFTSRPFVGSTFTFSAVLKRSCKDTSSDSKRSLSEALPTAFKGMKAILVDGRPVRGAVT 705
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCST-SVLPQLALVLIDKDVWDKEIGLVLHYMLK 1002
RYHL RL + V V N++ + L+ +L+++ I+ D+W E ++L L
Sbjct: 706 RYHLNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDILLLNRLH 765
Query: 1003 QQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE---- 1058
+ + G + LPK+ LL T SE D+D S ++ KP+R S + C Q+
Sbjct: 766 ELKNNGQVH---ELPKLVLLVT--SEADKDRYGS-AFDIVMYKPIRASTIASCLQQLLKV 819
Query: 1059 -DPESSKKLQQKRKKPS-LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRA 1116
PE +K Q R PS L LL GK IL+VDDN VN RVA ALKK+GA V CV+ G+
Sbjct: 820 VMPE--RKDNQNR--PSFLRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKD 875
Query: 1117 AVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ-----IASGESSAEMFGN 1171
AV L PH FDACFMD+QMPEMDGF+AT QIR +E + NE+ + G + E
Sbjct: 876 AVSLLQQPHCFDACFMDVQMPEMDGFEATRQIRQMEVKANEERKALDLMEGSTFVES--- 932
Query: 1172 VGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
H+P+LAMTADVIQA+ E+C+K GMD YVSKPF++EQLY AV+R
Sbjct: 933 ----HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 976
>gi|413923913|gb|AFW63845.1| putative histidine kinase family protein [Zea mays]
Length = 975
Score = 962 bits (2486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/991 (51%), Positives = 672/991 (67%), Gaps = 68/991 (6%)
Query: 263 KWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVH 322
+WR +VL+ +A S + W ++ + R +E L SMC+ERARMLQ+QF V++NHVH
Sbjct: 14 RWRGLAAAAWVLVAVACSAVMHWTMRRESMDRAEERLVSMCEERARMLQEQFGVTVNHVH 73
Query: 323 ALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGW 382
A+AIL++TF++ K PSA+DQ TF +YT RT+FERPL +GVAYA +V H ERE FE Q GW
Sbjct: 74 AIAILIATFNYDKSPSAIDQDTFAKYTARTSFERPLLNGVAYAQRVFHHEREMFESQQGW 133
Query: 383 KIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILR 442
+ M+ E PAP Q EYAPVIFSQ+TVS++ IDMMSG+EDRENILR
Sbjct: 134 IMNTMQRE--------------PAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENILR 179
Query: 443 ARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSL 502
AR +GK VLT PF+LL SNHLGVVLTFAVY DLP DA+ EQR+EAT+GYLG ++DV SL
Sbjct: 180 ARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESL 239
Query: 503 VEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLDFGDPSRKHEMH 560
VE LL +LA Q IVVNVYD TNAS + +YGP +D L VS LDFGDP R+HEM
Sbjct: 240 VENLLSKLAGNQDIVVNVYDVTNASEAMVLYGPSSSDERVPFLHVSMLDFGDPFRRHEMR 299
Query: 561 CRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADV 620
CR++QK P+ W+AI +G VI +L+G+ AA +R +V D +M ELK +AEAADV
Sbjct: 300 CRYRQKLPMQWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADV 359
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKSQFLATVSHEIRTPMNGVLGML ML+ T+L Q DYAQTA G+ LI+LINDVLD+
Sbjct: 360 AKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDR 419
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
AKIE+G+LE E VPF L ++D+V+SLFSSK+ +K IELA++V D VP+ V+GDP RFRQ
Sbjct: 420 AKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPKDVLGDPWRFRQ 479
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS----VQHKSDKVYN 796
I+TNLVGN++KFT+ +GH+FV V LAD+ + +VL ++N V ++ +N
Sbjct: 480 ILTNLVGNAVKFTE-RGHVFVRVCLADNSNMEA---GQVLNGAMNGKDGRVDSTTNGAFN 535
Query: 797 TLSGFPVVDRWKSWENFKML--DNTNTMEQL----------GRIKLLVTVEDTGVGIPLE 844
TLSGF DR SW+ FKML D + ++ L + L +++EDTGVGIPL+
Sbjct: 536 TLSGFEAADRRNSWQYFKMLLSDKESLLDDLEGTNSDQSDSDHVTLAISIEDTGVGIPLQ 595
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CL ELMGG+I FVS P GSTF+F+ T
Sbjct: 596 AQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFVSRPFVGSTFTFSTTLK 655
Query: 905 EGERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
++ S+D + F+G++A++ID + +R+ VTRYHL+RL + V V N+M
Sbjct: 656 RSYKDISVDSSRSLLEALPTAFKGMKAILIDGRPVRSAVTRYHLKRLGIIVQVVNNMSAV 715
Query: 964 CSYLSDTCSTSVLPQLALVL-IDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
+V + A +L I+ D W E + L L++ + + ++S + K+ LL
Sbjct: 716 VKAFPGQNGATVSREKATILFIESDFWRPETDVQLLNHLREHKNR---QLS-DGHKVVLL 771
Query: 1023 ATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ-----EDPESSKKLQQKRKKPS-LG 1076
T SE D+D+ S + ++ KP+R S++ Q E PE + +PS L
Sbjct: 772 VT--SEADKDKYGSIFDI-VMCKPIRASMIASSIQQLLKVEMPER----RNNHNRPSFLR 824
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
LL GK ILVVDDN VN RVA ALKK+GA V+CV+ G+ A+ L PPH FDACFMD+QM
Sbjct: 825 SLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHCFDACFMDVQM 884
Query: 1137 PEMDGFQATWQIRHLENEINEQ------IASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
PEMDGF+AT QIR E +NE+ + G + E +H+P+LAMTADVIQA+
Sbjct: 885 PEMDGFEATRQIRQTEMRVNEERKNKLVLIEGSTFVE-------YHLPVLAMTADVIQAT 937
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221
E+C+K GMD YVSKPF++EQLY AV+R +
Sbjct: 938 YEKCIKSGMDGYVSKPFDEEQLYQAVSRLIV 968
>gi|46390553|dbj|BAD16039.1| putative histidine kinase 1 [Oryza sativa Japonica Group]
Length = 984
Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/1007 (51%), Positives = 674/1007 (66%), Gaps = 80/1007 (7%)
Query: 258 PRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVS 317
P + WR +VL+ +A + ++ W L+ + R +E L SMC+ERARMLQ+QF V+
Sbjct: 4 PEARSGWRNAAAAAWVLVAVACAAYMHWHLRRETMDRAEERLVSMCEERARMLQEQFGVT 63
Query: 318 MNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFE 377
+NHVHALAIL+STFH K PSA+DQ TF +YT RT+FERPL +GVAYA ++ H ERE FE
Sbjct: 64 VNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTSFERPLLNGVAYAQRIFHHEREMFE 123
Query: 378 KQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDR 437
Q GW +K M+ + AP QDEYAPVIFSQ+TVS++ IDMMSG+EDR
Sbjct: 124 NQQGWIMKTMKRQ--------------AAPPQDEYAPVIFSQDTVSYLARIDMMSGEEDR 169
Query: 438 ENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASY 497
ENILRARA+GK VLT PF+LL SNHLGVVLTFAVY L DA+ E+R+EAT GYLG ++
Sbjct: 170 ENILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVEATAGYLGGAF 229
Query: 498 DVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLDFGDPSR 555
DV SLVE LL +LA Q IVVNVYD TNAS P+ MYGP D L VS LDFGDP R
Sbjct: 230 DVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQSPDGKVSLFHVSTLDFGDPFR 289
Query: 556 KHEMHC--RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKA 613
HEM C R++QKPP+PW+AI +G VI +LVG+I AA +R +V D +M ELK
Sbjct: 290 AHEMRCRSRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCRKMEELKT 349
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVL------------GMLQMLMDTELDAAQLDYAQ 661
+AEAADVAKSQFLATVSHEIRTPMNGVL GML ML+ T+L Q DYAQ
Sbjct: 350 QAEAADVAKSQFLATVSHEIRTPMNGVLVVQRSKILPFDVGMLDMLLGTDLSMTQKDYAQ 409
Query: 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
TA G+ LI+LINDVLD+AKIE+G+LE E VPF L ++D+V+SLFSSK+ +K IELA+
Sbjct: 410 TAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAV 469
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLE 781
+V D VP+VVIGDP R+RQI+TNLVGN++KFT+ +GH+FV V LA++ SKV+ ++VL
Sbjct: 470 FVCDDVPKVVIGDPWRYRQILTNLVGNAVKFTE-RGHVFVRVCLAEN--SKVEA-NQVLN 525
Query: 782 KSLNS----VQHKSDKVYNTLSGFPVVDRWKSWENFKML--DNTNTMEQL---------- 825
++N V+ ++ +NTLSGF D +W+ FK+L D M++L
Sbjct: 526 GTMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDC 585
Query: 826 GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
+ L++++EDTGVGIPL AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CL ELMGG+I
Sbjct: 586 DCVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 645
Query: 886 GFVSEPGTGSTFSFTVTFTEGERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR 944
F S P GSTF+F+ ++ S D K + F+G++A+++D + +R VTR
Sbjct: 646 SFTSRPFVGSTFTFSAVLKRSCKDTSSDSKRSLSEALPTAFKGMKAILVDGRPVRGAVTR 705
Query: 945 YHLQRLEMAVHVANSMQLACSYLSDTCST-SVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
YHL RL + V V N++ + L+ +L+++ I+ D+W E ++L L +
Sbjct: 706 YHLNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDILLLNRLHE 765
Query: 1004 QRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE----- 1058
+ G + LPK+ LL T SE D+D S ++ KP+R S + C Q+
Sbjct: 766 LKNNGQVH---ELPKLVLLVT--SEADKDRYGS-AFDIVMYKPIRASTIASCLQQLLKVV 819
Query: 1059 DPESSKKLQQKRKKPS-LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
PE +K Q R PS L LL GK IL+VDDN VN RVA ALKK+GA V CV+ G+ A
Sbjct: 820 MPE--RKDNQNR--PSFLRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDA 875
Query: 1118 VDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ-----IASGESSAEMFGNV 1172
V L PH FDACFMD+QMPEMDGF+AT QIR +E + NE+ + G + E
Sbjct: 876 VSLLQQPHCFDACFMDVQMPEMDGFEATRQIRQMEVKANEERKALDLMEGSTFVES---- 931
Query: 1173 GLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
H+P+LAMTADVIQA+ E+C+K GMD YVSKPF++EQLY AV+R
Sbjct: 932 ---HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 975
>gi|162458665|ref|NP_001105857.1| histidine kinase [Zea mays]
gi|89242031|dbj|BAE80686.1| histidine kinase [Zea mays]
Length = 975
Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/989 (51%), Positives = 671/989 (67%), Gaps = 68/989 (6%)
Query: 263 KWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVH 322
+WR +VL+ +A S + W ++ + R +E L SMC+ERARMLQ+QF V++NHVH
Sbjct: 14 RWRGLAAAAWVLVAVACSAVMHWTMRRESMDRAEERLVSMCEERARMLQEQFGVTVNHVH 73
Query: 323 ALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGW 382
A+AIL++TF++ K PSA+DQ TF +YT RT+FERPL +GVAYA +V H ERE FE Q GW
Sbjct: 74 AIAILIATFNYDKSPSAIDQDTFAKYTARTSFERPLLNGVAYAQRVFHHEREMFESQQGW 133
Query: 383 KIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILR 442
+ M+ E PAP Q EYAPVIFSQ+TVS++ IDMMSG+EDRENILR
Sbjct: 134 IMNTMQRE--------------PAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENILR 179
Query: 443 ARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSL 502
AR +GK VLT PF+LL SNHLGVVLTFAVY DLP DA+ EQR+EAT+GYLG ++DV SL
Sbjct: 180 ARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESL 239
Query: 503 VEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLDFGDPSRKHEMH 560
VE LL +LA Q IVVNVYD TNAS + +YGP +D L VS LDFGDP R+HEM
Sbjct: 240 VENLLSKLAGNQDIVVNVYDVTNASEAMVLYGPSSSDERVPFLHVSMLDFGDPFRRHEMR 299
Query: 561 CRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADV 620
CR++QK P+ W+AI +G VI +L+G+ AA +R +V D +M ELK +AEAADV
Sbjct: 300 CRYRQKLPMQWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADV 359
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKSQFLATVSHEIRTPMNGVLGML ML+ T+L Q DYAQTA G+ LI+LINDVLD+
Sbjct: 360 AKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDR 419
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
AKIE+G+LE E VPF L ++D+V+SLFSSK+ +K IELA++V D VP+ V+GDP RFRQ
Sbjct: 420 AKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPKDVLGDPWRFRQ 479
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS----VQHKSDKVYN 796
I+TNLVGN++KFT+ +GH+FV V LAD+ + +VL ++N V ++ +N
Sbjct: 480 ILTNLVGNAVKFTE-RGHVFVRVCLADNSNMEA---GQVLNGAMNGKDGRVDSTTNGAFN 535
Query: 797 TLSGFPVVDRWKSWENFKML--DNTNTMEQL----------GRIKLLVTVEDTGVGIPLE 844
TLSGF DR SW+ FKML D + ++ L + L +++EDTGVGIPL+
Sbjct: 536 TLSGFEAADRRNSWQYFKMLLSDKESLLDDLEGTNSDQSDSDHVTLAISIEDTGVGIPLQ 595
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CL ELMGG+I FVS P GSTF+F+ T
Sbjct: 596 AQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFVSRPFVGSTFTFSTTLK 655
Query: 905 EGERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
++ S+D + F+G++A++ID + +R+ VTRYHL+RL + V N+M
Sbjct: 656 RSYKDISVDSSRSLSEALPTAFKGMKAILIDGRPVRSAVTRYHLKRLGITVQAVNNMSAV 715
Query: 964 CSYLSDTCSTSVLPQLALVL-IDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
+V + A +L I+ D W E + L L++ + + ++S + K+ LL
Sbjct: 716 VKAFPGQNGATVSREKATILFIESDFWRPETDVQLLNHLREHKNR---QLS-DGHKVVLL 771
Query: 1023 ATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ-----EDPESSKKLQQKRKKPS-LG 1076
T SE D+D+ S + ++ KP+R S++ Q E PE + + +PS L
Sbjct: 772 VT--SEADKDKYGSIFDI-VMCKPIRASMIASSIQQLLKVEMPER----RDNQNRPSFLR 824
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
LL GK ILVVDDN VN RVA ALKK+GA V+CV+ G+ A+ L PPH FDACFMD+QM
Sbjct: 825 SLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHCFDACFMDVQM 884
Query: 1137 PEMDGFQATWQIRHLENEINEQ------IASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
PEMDGF+AT QIR E +NE+ + G + E +H+P+LAMTADVIQA+
Sbjct: 885 PEMDGFEATRQIRQTEMRVNEERKNKLVLIEGSTFVE-------YHLPVLAMTADVIQAT 937
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+C+K GMD YVSKPF++EQLY AV+R
Sbjct: 938 YEKCIKSGMDGYVSKPFDEEQLYQAVSRL 966
>gi|88714407|gb|ABD49495.1| cytokinin receptor 2 [Physcomitrella patens]
Length = 1082
Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/1031 (50%), Positives = 666/1031 (64%), Gaps = 87/1031 (8%)
Query: 259 RSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSM 318
R W K VV+V+ A+S+ +F ++ M RR+E LA+MC+ RARML++QF SM
Sbjct: 70 RYGHNWHTKAFVVWVVFMGAVSLSVFLAMRFDMLERRRENLANMCEGRARMLEEQFKASM 129
Query: 319 NHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEK 378
NHV AL L++TFH K PSA++Q+TF Y ERTAFERPL SGVA+A +VLH+ R+ FE
Sbjct: 130 NHVRALTALLTTFHLGKQPSAINQETFATYAERTAFERPLMSGVAFAERVLHANRKLFES 189
Query: 379 QHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRE 438
HGW IK+M ++D L QD DEYAP SQ+++S++ S+DMMSG+EDRE
Sbjct: 190 AHGWTIKEMYSKD--LQQDF-----------DEYAPTTMSQKSLSYLTSLDMMSGQEDRE 236
Query: 439 NILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYD 498
NI+RAR GKG LT PF+LL+S HLGVV TFAVY TDL DA E RI+AT GYLG ++D
Sbjct: 237 NIIRARELGKGALTKPFRLLESKHLGVVFTFAVYCTDLHDDAKKEDRIKATAGYLGGAFD 296
Query: 499 VPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYG-PDVTDTGLLRVSNLDFGDPSRKH 557
V +LVE LL Q+A Q I VNVYD TN + P+ MYG +V + VS+LDFGDP+R+H
Sbjct: 297 VETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGHTNVEKSKNTYVSSLDFGDPARRH 356
Query: 558 EMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEA 617
EM CRFK+ PWTAI+ SIG+ VI LVGH+ HA+ NRI +VE + ELK RA+
Sbjct: 357 EMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQELKMRADD 416
Query: 618 ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDV 677
A +AKSQFLATVSHEIRTPMNGVLGML ML +T L+ AQLDYA+TA SGK LI+LIN+V
Sbjct: 417 AVIAKSQFLATVSHEIRTPMNGVLGMLNMLTNTRLNPAQLDYARTALASGKALINLINEV 476
Query: 678 LDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGR 737
LDQAKIESGR+E E VPF L +LD+VLSLF ++ GIELA+YVS +VP++++GDPGR
Sbjct: 477 LDQAKIESGRVELEHVPFDLRAILDDVLSLFHGQSRDSGIELAVYVSAKVPKILVGDPGR 536
Query: 738 FRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVD----VKDKVLEKSLNSVQHKSDK 793
FRQIITNLVGNSIKFT+ GHIFV VHL +DV + +D D L+ + S +D
Sbjct: 537 FRQIITNLVGNSIKFTE-AGHIFVCVHLNEDVNNLMDGDEGEADDTLDGEVESAGPLTDM 595
Query: 794 VY--NTLSGFPVVDRWKSWENFKML-------------DNTNTMEQLGRIKLLVTVEDTG 838
Y NTLSG D SWE F+ L D N + G + L+++VEDTG
Sbjct: 596 NYRFNTLSGRETADYRNSWEMFERLLAQEKSHRSGVDQDTRNYCDLNGAVNLVISVEDTG 655
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
VGIPL Q R+F PFMQADSSTSR YGGTGIGLSISR LV+LM GE+ FVS P GSTF+
Sbjct: 656 VGIPLHVQDRVFMPFMQADSSTSRNYGGTGIGLSISRSLVDLMSGEMEFVSHPKVGSTFT 715
Query: 899 FTVTFTEGERNSLDPK---------WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQR 949
FT N P+ + Q P + F+G+R LV+D + +R EVTR+HLQR
Sbjct: 716 FTAELQRVPANV--PEHILREGRNCYLQTPPLTTCFQGMRVLVVDGRKVRCEVTRHHLQR 773
Query: 950 LEMAVHVANSMQLACSYLSDTCS----------TSVLPQLALVLIDKDVW---------- 989
L + V VA++ A L+ T S + L+ +DKD W
Sbjct: 774 LGLRVEVAHTPGEAAELLTTTVDRGNRGSRDSQRSFATDIELIFVDKDAWGPGTWVNFRS 833
Query: 990 ---DKEIGLVLH---------YMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSD 1037
+ IG + H Y R G ++ K+ L+ATS++E + +K+
Sbjct: 834 LLTESFIGQLSHNQSGLTSYQYRSAAGRLPNGYPTLNSMKKMVLVATSMNEMELSVVKAS 893
Query: 1038 GIV-TLLTKPLRLSVLIGCFQE-----DPESSKKLQQKRKKPSLGHLLKGKQILVVDDNM 1091
G V T++ KPLR S++ +E D + + SL +LL GK+ILVVDDN
Sbjct: 894 GFVDTVVRKPLRASLVAASLEEILGVGDGGRDQGQNLQGGINSLQNLLTGKRILVVDDNP 953
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
VNR+VA GAL K+GA V CV+ GRAA+ L PPHN+DACFMD+QMPEMDGF+AT IR
Sbjct: 954 VNRKVAAGALNKYGAQVDCVNSGRAAIQSLKPPHNYDACFMDVQMPEMDGFEATRLIRKA 1013
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
E + +G S+ FG HVPILAMTADVIQA++E+CM+CGMD YV+KPF++
Sbjct: 1014 EAAAVDNWQAGRFSS--FGR--RLHVPILAMTADVIQATSEECMRCGMDGYVAKPFDEHH 1069
Query: 1212 LYTAVARFFMS 1222
LY AVA+ F
Sbjct: 1070 LYQAVAKHFFG 1080
>gi|302810422|ref|XP_002986902.1| hypothetical protein SELMODRAFT_158365 [Selaginella moellendorffii]
gi|300145307|gb|EFJ11984.1| hypothetical protein SELMODRAFT_158365 [Selaginella moellendorffii]
Length = 905
Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/947 (53%), Positives = 643/947 (67%), Gaps = 79/947 (8%)
Query: 294 RRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTA 353
R +E L +MCDERA MLQDQF SMNHV ALA L+ TFH K PS +DQ+TF YT+RT
Sbjct: 8 RHRELLDNMCDERAWMLQDQFTASMNHVKALAALLRTFHLGKQPSVLDQETFAVYTKRTE 67
Query: 354 FERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYA 413
FERPL +GVAYA ++ HSERE FE+++GW+IK M T+ VQ +P Q EYA
Sbjct: 68 FERPLMTGVAYAQRLFHSEREAFERRYGWEIKTMTTKK---VQ--SP--------QAEYA 114
Query: 414 PVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYN 473
P +F+Q ++S++ S+DM+SGK + +NILRAR+SGKGVLT P +LL+SNHLG+V+TF VY
Sbjct: 115 PAVFTQNSLSYLESLDMLSGKANCDNILRARSSGKGVLTTPMRLLESNHLGIVVTFTVYK 174
Query: 474 TDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMY 533
DLP+DA+ E+RI A+ GY+G ++D LV LL QLA Q+I+VNVYD TN S P+ MY
Sbjct: 175 EDLPEDASEEERIAASAGYVGGAFDFELLVTNLLKQLAGSQSIIVNVYDVTNESKPLLMY 234
Query: 534 GPDVTDTGL-LRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFH 592
GPD G + V+ LDF DP+RKHE+ CRF P+ W+AI S+G++VI LVGHI H
Sbjct: 235 GPDAYLEGRDVHVTELDFRDPARKHEIRCRFHNPLPISWSAITTSVGILVIVFLVGHILH 294
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
AAINRI +VE DY M +LK AE+AD+AKSQFLATVSHEIRTPMNGVLGMLQMLMDT+L
Sbjct: 295 AAINRIQKVEEDYRRMEDLKVLAESADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDL 354
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
D Q DYA TAH SGK LI LIN+VLDQAKIESGR+E E VPF L +LD++L LFS++
Sbjct: 355 DPTQRDYAGTAHESGKQLIKLINEVLDQAKIESGRMELEMVPFDLRTILDDILCLFSAEI 414
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
KGIELA++VS++VP+V++GDP R QIITNLVGNS+KFT+ +GHIFV VH+ D++ +
Sbjct: 415 KDKGIELAVFVSEKVPDVLVGDPARLHQIITNLVGNSVKFTE-RGHIFVCVHMEDELTTV 473
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKM----LDNTNTMEQLGRI 828
E+ +S NTLSG D SW++FK L++ N E L +
Sbjct: 474 SK------EEGFDSC--------NTLSGMKAADPRLSWDSFKSLVGGLEDRNCGE-LTDV 518
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
+++ VEDTGVGIPL AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CLVELM G + FV
Sbjct: 519 RIVFNVEDTGVGIPLLAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMQGSMDFV 578
Query: 889 SEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE-------FRGLRALVIDDKSIRAE 941
S+PG G+TF F+V F GE + ++ P S+ + +RALV+D + +R++
Sbjct: 579 SQPGIGATFRFSVVFKRGEMKMPEARYPHISPKHSQMARLTPCLKNMRALVVDGRPVRSQ 638
Query: 942 VTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYML 1001
+TRYHLQRL M V V N + A S +++ S L +VL+DKD W GLV+ L
Sbjct: 639 ITRYHLQRLGMQVEVVNDIPAALSGGANSRS------LDMVLVDKDSWGPGSGLVVPQKL 692
Query: 1002 KQQRRKGGLEISRNLPKIFLLATSISETDRDELKS--DGIVTLLTKPLRLSVLIGCFQED 1059
K GG +N I L ++I D + LK+ G + KP+R S F E
Sbjct: 693 KD---AGGR--FKNAKFILLAGSAI---DNEPLKTAPSGFIATHHKPVRASSF-ATFLEK 743
Query: 1060 --PESSKKLQQKR--KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
SK+L + + L LL GKQILVVDDN VNRRVA GAL K+GA V CV+ G+
Sbjct: 744 VFGFGSKRLNGREISQGSRLHSLLSGKQILVVDDNKVNRRVAAGALTKYGARVECVESGK 803
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
AA+ +L P H FDACFMD+QMPEMDGF+AT +IR E G+
Sbjct: 804 AAIARLQPSHEFDACFMDVQMPEMDGFEATRKIREAE-----------------GHDCKC 846
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+PILAMTAD+IQA+ ++C KCGMD YVSKPFE+EQLY AVA++F S
Sbjct: 847 RLPILAMTADLIQATRDECTKCGMDGYVSKPFEEEQLYKAVAKYFES 893
>gi|302792032|ref|XP_002977782.1| WOL, cytokinin response 1 [Selaginella moellendorffii]
gi|300154485|gb|EFJ21120.1| WOL, cytokinin response 1 [Selaginella moellendorffii]
Length = 905
Score = 944 bits (2441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/947 (53%), Positives = 643/947 (67%), Gaps = 79/947 (8%)
Query: 294 RRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTA 353
R +E L +MCDERA MLQDQF SMNHV ALA L+ TFH K PS +DQ+TF YT+RT
Sbjct: 8 RHRELLDNMCDERAWMLQDQFTASMNHVKALAALLRTFHLGKQPSVLDQETFAVYTKRTE 67
Query: 354 FERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYA 413
FERPL +GVAYA ++ HSERE FE+++GW+IK M T+ VQ +P Q EYA
Sbjct: 68 FERPLMTGVAYAQRLFHSEREAFERRYGWEIKTMTTKK---VQ--SP--------QAEYA 114
Query: 414 PVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYN 473
P +F+Q ++S++ S+DM+SGK + +NILRAR+SGKGVLT P +LL+SNHLG+V+TF VY
Sbjct: 115 PAVFTQNSLSYLESLDMLSGKANCDNILRARSSGKGVLTTPMRLLESNHLGIVVTFTVYK 174
Query: 474 TDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMY 533
DLP+DA+ E+RI A+ GY+G ++D LV LL QLA Q+I+VNVYD TN S P+ MY
Sbjct: 175 EDLPEDASEEERIAASAGYVGGAFDFELLVTNLLKQLAGSQSIIVNVYDVTNESKPLLMY 234
Query: 534 GPDVTDTGL-LRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFH 592
GPD G + V+ LDF DP+RKHE+ CRF P+ W+AI S+G++VI LVGHI H
Sbjct: 235 GPDAYLEGRDVHVTELDFRDPARKHEIRCRFHNPLPISWSAITTSVGILVIVFLVGHILH 294
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
AAINRI +VE DY M +LK AE+AD+AKSQFLATVSHEIRTPMNGVLGMLQMLMDT+L
Sbjct: 295 AAINRIQKVEEDYRRMEDLKVLAESADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDL 354
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
D Q DYA TAH SGK LI LIN+VLDQAKIESGR+E E VPF L +LD++L LFS++
Sbjct: 355 DPTQRDYAGTAHESGKQLIKLINEVLDQAKIESGRMELEMVPFDLRTILDDILCLFSAEI 414
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
KGIELA++VS++VP+V++GDP R QIITNLVGNS+KFT+ +GHIFV VH+ D++ +
Sbjct: 415 KDKGIELAVFVSEKVPDVLVGDPARLHQIITNLVGNSVKFTE-QGHIFVCVHMEDELTTV 473
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKM----LDNTNTMEQLGRI 828
E+ +S NTLSG D SW++FK L++ N E L +
Sbjct: 474 SK------EEGFDSC--------NTLSGVKAADLRLSWDSFKSLVGGLEDRNCGE-LTDV 518
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
+++ VEDTGVGIPL AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CLVELM G + FV
Sbjct: 519 RIVFNVEDTGVGIPLLAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMQGSMDFV 578
Query: 889 SEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE-------FRGLRALVIDDKSIRAE 941
S+PG G+TF F+V F GE + ++ P S+ + +RALV+D + +R++
Sbjct: 579 SQPGIGATFRFSVVFKRGEMKMPEARYPHISPKHSQMARLTPCLKNMRALVVDGRPVRSQ 638
Query: 942 VTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYML 1001
+TRYHLQRL M V V N + A S +++ S L +VL+DKD W GLV+ L
Sbjct: 639 ITRYHLQRLGMQVEVVNDIPSALSGGANSRS------LDMVLVDKDSWGPGSGLVVPQKL 692
Query: 1002 KQQRRKGGLEISRNLPKIFLLATSISETDRDELKS--DGIVTLLTKPLRLSVLIGCFQED 1059
K GG +N I L ++I D + LK+ G + KP+R S F E
Sbjct: 693 KD---AGGR--FKNAKFILLAGSAI---DNEPLKTAPSGFIATHHKPVRASSF-ATFLEK 743
Query: 1060 --PESSKKLQQKR--KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
SK+L + + L LL GKQILVVDDN VNRRVA GAL K+GA V CV+ G+
Sbjct: 744 VFGFGSKRLNGREISQGSRLHSLLSGKQILVVDDNKVNRRVAAGALTKYGARVECVESGK 803
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
AA+ +L P H FDACFMD+QMPEMDGF+AT +IR E G+
Sbjct: 804 AAIARLQPSHEFDACFMDVQMPEMDGFEATRKIREAE-----------------GHDCKC 846
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+PILAMTAD+IQA+ ++C KCGMD YVSKPFE+EQLY AVA++F S
Sbjct: 847 RLPILAMTADLIQATRDECTKCGMDGYVSKPFEEEQLYKAVAKYFES 893
>gi|302821913|ref|XP_002992617.1| hypothetical protein SELMODRAFT_430773 [Selaginella moellendorffii]
gi|300139581|gb|EFJ06319.1| hypothetical protein SELMODRAFT_430773 [Selaginella moellendorffii]
Length = 1096
Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/1010 (51%), Positives = 641/1010 (63%), Gaps = 152/1010 (15%)
Query: 294 RRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVD------------ 341
RR+ETLA+MC ERA MLQDQFN SMNHV +L LV+TFH K PSA+D
Sbjct: 156 RRRETLANMCKERAWMLQDQFNSSMNHVRSLTALVTTFHLAKQPSALDQARQFFCFSLKN 215
Query: 342 ---------------------QKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQH 380
Q+TF YT RT+FERPL SGVAYA V H +R FE++
Sbjct: 216 KASFRAFGVGTLAQLSWLVALQETFAAYTARTSFERPLMSGVAYAHNVEHWQRRAFEEEM 275
Query: 381 GWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENI 440
GW IK+M + N A DEYAP + SQ T++H+ S+DMMSG+EDRENI
Sbjct: 276 GWSIKEMRS------------NAPRAQNLDEYAPTVLSQNTLAHLASVDMMSGEEDRENI 323
Query: 441 LRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVP 500
LR+RASGKG LT PF+LL+S+HLGVVLTF VY TDLP DATP QRI+AT G L S
Sbjct: 324 LRSRASGKGALTSPFRLLESDHLGVVLTFTVYKTDLPDDATPAQRIQATAGSLSES---- 379
Query: 501 SLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMH 560
QTI+VNV D TN S P+ MYGP++ D + V L+FGDP RKHEM
Sbjct: 380 -------------QTIIVNVNDVTNKSNPLVMYGPNIPDGNEIEVCQLEFGDPFRKHEMR 426
Query: 561 CRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADV 620
CRF ++ V WTAI + G+VVI LLV IF+AA NRIA+VE DY +M +LK RAE+ADV
Sbjct: 427 CRFNKEASVVWTAITTTFGIVVIVLLVAQIFYAAGNRIAKVEEDYRKMEDLKVRAESADV 486
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD+ Q DYA TA SGK LI LIN+VLDQ
Sbjct: 487 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDSTQRDYAHTALESGKQLIKLINEVLDQ 546
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
AKIESGR+E E VPF L +LD++L+ FS++ KGIELA YVS+RVP+VV+GDP R Q
Sbjct: 547 AKIESGRMELETVPFKLRTILDDILTPFSAENKDKGIELAAYVSERVPDVVLGDPVRLHQ 606
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVY----- 795
I+TNLVGNSIKFT D+GHIFVSVHL +DV++ + + + K + Q SDK+
Sbjct: 607 IVTNLVGNSIKFT-DRGHIFVSVHLEEDVKAAMSAQCEACSKQVTETQDHSDKLNTVDAA 665
Query: 796 ---NTLSGFPVVDRWKSWENFKMLDN------TNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+TLSG DR +WE FK++ T + + +KL+ +VEDTGVGIP+ AQ
Sbjct: 666 GSCSTLSGLEAADRRNNWETFKLILKQEKSRLTTHKQPVDTVKLVFSVEDTGVGIPVHAQ 725
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F+PFMQADSSTSR YGGTGIGLSIS+CLVELM GEIGFVS G G+TF FTV F G
Sbjct: 726 ERVFSPFMQADSSTSRNYGGTGIGLSISKCLVELMKGEIGFVSSLGVGTTFWFTVNFKVG 785
Query: 907 ERNSLDP-------KWQQY----VPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH 955
+ +L+ K Q+ P ++ GL+ALV+D + +R+EVTRYHL+RL + V
Sbjct: 786 DLEALEAAHSAECSKQQRAAHSSTPLTTQLSGLKALVVDGRPVRSEVTRYHLRRLGIQVD 845
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
VA+ + A ++ L ++LIDKD W GL +K+ G ++
Sbjct: 846 VASDVSSALAHQRSK-------NLDMILIDKDAWGSSTGLSYPSKIKE----AGPTLA-- 892
Query: 1016 LPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRK--- 1071
PK+ LLA + D + K+ G ++ KPLR S + E + L KR+
Sbjct: 893 -PKLVLLAF---DDDEHKAKAAGFSDNVIKKPLRASHIANHL----EKALGLDLKRRTRE 944
Query: 1072 ---------------------KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTC 1110
+L LL GK ILVVDDN VNRRVA GAL+K+GA V C
Sbjct: 945 SSTPTSSSSDTSASINSGSGSSNNLHSLLTGKWILVVDDNKVNRRVAAGALQKYGARVEC 1004
Query: 1111 VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFG 1170
V+ GR A++KL PPH FDACFMD+QMPEMDGF+AT +IR E
Sbjct: 1005 VESGRLAIEKLEPPHKFDACFMDIQMPEMDGFEATRRIRCFEKR---------------- 1048
Query: 1171 NVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
G HVPILAMTADVIQA+ ++C +CGMDDYVSKPFE++QLY AVA+FF
Sbjct: 1049 --GGSHVPILAMTADVIQATYDECRRCGMDDYVSKPFEEKQLYRAVAKFF 1096
>gi|168046338|ref|XP_001775631.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
gi|162673049|gb|EDQ59578.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
Length = 1008
Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/1001 (51%), Positives = 656/1001 (65%), Gaps = 66/1001 (6%)
Query: 259 RSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSM 318
R W K VV+V+ A+S+ +F ++ M RR+E LA+MC+ RARML++QF SM
Sbjct: 35 RYGHNWHTKAFVVWVVFMGAVSLSVFLAMRFDMLERRRENLANMCEGRARMLEEQFKASM 94
Query: 319 NHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEK 378
NHV AL L++TFH K PSA++Q+TF Y ERTAFERPL SGVA+A +VLH+ R+ FE
Sbjct: 95 NHVRALTALLTTFHLGKQPSAINQETFATYAERTAFERPLMSGVAFAERVLHANRKLFES 154
Query: 379 QHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRE 438
HGW IK+M ++D L QD DEYAP SQ+++S++ S+DMMSG+EDRE
Sbjct: 155 AHGWTIKEMYSKD--LQQDF-----------DEYAPTTMSQKSLSYLTSLDMMSGQEDRE 201
Query: 439 NILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYD 498
NI+RAR GKG LT PF+LL+S HLGVV TFAVY TDL DA E RI+AT GYLG ++D
Sbjct: 202 NIIRARELGKGALTKPFRLLESKHLGVVFTFAVYCTDLHDDAKKEDRIKATAGYLGGAFD 261
Query: 499 VPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYG-PDVTDTGLLRVSNLDFGDPSRKH 557
V +LVE LL Q+A Q I VNVYD TN + P+ MYG +V + VS+LDFGDP+R+H
Sbjct: 262 VETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGHTNVEKSKNTYVSSLDFGDPARRH 321
Query: 558 EMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEA 617
EM CRFK+ PWTAI+ SIG+ VI LVGH+ HA+ NRI +VE + ELK RA+
Sbjct: 322 EMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQELKMRADD 381
Query: 618 ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDV 677
A +AKSQFLATVSHEIRTPMNGVLGML ML +T L+ AQLDYA+TA SGK LI+LIN+V
Sbjct: 382 AVIAKSQFLATVSHEIRTPMNGVLGMLNMLTNTRLNPAQLDYARTALASGKALINLINEV 441
Query: 678 LDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGR 737
LDQAKIESGR+E E VPF L +LD+VLSLF ++ GIELA+YVS +VP++++GDPGR
Sbjct: 442 LDQAKIESGRVELEHVPFDLRAILDDVLSLFHGQSRDSGIELAVYVSAKVPKILVGDPGR 501
Query: 738 FRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVD----VKDKVLEKSLNSVQHKSDK 793
FRQIITNLVGNSIKFT+ GHIFV VHL +DV + +D D L+ + S +D
Sbjct: 502 FRQIITNLVGNSIKFTE-AGHIFVCVHLNEDVNNLMDGDEGEADDTLDGEVESAGPLTDM 560
Query: 794 VY--NTLSGFPVVDRWKSWENFKML-------------DNTNTMEQLGRIKLLVTVEDTG 838
Y NTLSG D SWE F+ L D N + G + L+++VEDTG
Sbjct: 561 NYRFNTLSGRETADYRNSWEMFERLLAQEKSHRSGVDQDTRNYCDLNGAVNLVISVEDTG 620
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
VGIPL Q R+F PFMQADSSTSR YGGTGIGLSISR LV+LM GE+ FVS P GSTF+
Sbjct: 621 VGIPLHVQDRVFMPFMQADSSTSRNYGGTGIGLSISRSLVDLMSGEMEFVSHPKVGSTFT 680
Query: 899 FTVTFTEGERNSLDPK---------WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQR 949
FT N P+ + Q P + F+G+R LV+D + +R EVTR+HLQR
Sbjct: 681 FTAELQRVPANV--PEHILREGRNCYLQTPPLTTCFQGMRVLVVDGRKVRCEVTRHHLQR 738
Query: 950 LEMAV--HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007
L + V V+ S + V+ + L+ +DKD W + +L +
Sbjct: 739 LGLRVLPSVSCSSIFFSIFKELLIYCEVISDIELIFVDKDAWGPGTWVNFRSLLTESFIG 798
Query: 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQE-----DPE 1061
++S N TS++E + +K+ G V T++ KPLR S++ +E D
Sbjct: 799 ---QLSHN------QTTSMNEMELSVVKASGFVDTVVRKPLRASLVAASLEEILGVGDGG 849
Query: 1062 SSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL 1121
+ + SL +LL GK+ILVVDDN VNR+VA GAL K+GA V CV+ GRAA+ L
Sbjct: 850 RDQGQNLQGGINSLQNLLTGKRILVVDDNPVNRKVAAGALNKYGAQVDCVNSGRAAIQSL 909
Query: 1122 TPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILA 1181
PPHN+DACFMD+QMPEMDGF+AT IR E + +G S+ FG HVPILA
Sbjct: 910 KPPHNYDACFMDVQMPEMDGFEATRLIRKAEAAAVDNWQAGRFSS--FGR--RLHVPILA 965
Query: 1182 MTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
MTADVIQA++E+CM+CGMD YV+KPF++ LY AVA+ F
Sbjct: 966 MTADVIQATSEECMRCGMDGYVAKPFDEHHLYQAVAKHFFG 1006
>gi|168053506|ref|XP_001779177.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
gi|162669436|gb|EDQ56023.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
Length = 1123
Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/1060 (49%), Positives = 666/1060 (62%), Gaps = 126/1060 (11%)
Query: 258 PRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVS 317
PR W K+ V +V+ A+S+ +++ ++ M RR+E LA+MC+ RARML+DQF S
Sbjct: 91 PRYGHNWHTKVFVFWVVFMGAVSLSVYFAMRFDMLERRRENLANMCEGRARMLEDQFKAS 150
Query: 318 MNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFE 377
MNHV AL L++TFH K PSA++Q+TF Y RTAFERPL SGVAYA +VLH+ R FE
Sbjct: 151 MNHVRALTALLTTFHLGKQPSAINQETFATYAARTAFERPLMSGVAYAERVLHANRAMFE 210
Query: 378 KQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDR 437
HGW IK+M ++++ QD DEYAP SQETV ++ S+DMMSG+EDR
Sbjct: 211 LTHGWTIKEMFSKERQ--QDF-----------DEYAPTTMSQETVFYLTSLDMMSGQEDR 257
Query: 438 ENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLG------ 491
ENI+RAR SGKG LT PF+LL+S HLGVV TFAVY+TDLP DAT E RI+AT G
Sbjct: 258 ENIIRARESGKGALTNPFRLLESKHLGVVFTFAVYSTDLPFDATKEDRIKATAGLQIGNR 317
Query: 492 --------------------------------YLGASYDVPSLVEKLLHQLASKQTIVVN 519
YLG ++DV +LVE LL Q+A Q I VN
Sbjct: 318 IILVQYMESSRTSCTITWKLCLNFLGIHDCRSYLGGAFDVETLVENLLRQMAGSQIIAVN 377
Query: 520 VYDTTNASAPINMYG-PDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASI 578
VYD TN + P+ MYG +V + VS LDFGDP R HEM CRFK+ PWTAI+ SI
Sbjct: 378 VYDITNDTMPLVMYGHTNVERSDNTYVSLLDFGDPLRNHEMRCRFKEDALPPWTAISTSI 437
Query: 579 GVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMN 638
G+ VI LVGH+ HA+ NRI +VE + ELK RA+ A +AKSQFLATVSHEIRTPMN
Sbjct: 438 GIFVIAFLVGHMLHASRNRIDKVEENCRIFQELKMRADDAVIAKSQFLATVSHEIRTPMN 497
Query: 639 GVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698
GVLGMLQMLMDT L++ QLDYA+TA SGK LI+LIN+VLDQAKIESGRLE E VPF L
Sbjct: 498 GVLGMLQMLMDTPLNSTQLDYARTAQASGKALITLINEVLDQAKIESGRLELEHVPFDLR 557
Query: 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGH 758
+LD+VLSLF K+ GIELA+YVS++VP+++IGDPGRFRQII NLVGNSIKFT+ GH
Sbjct: 558 AILDDVLSLFHGKSRASGIELAVYVSEKVPKILIGDPGRFRQIIINLVGNSIKFTE-AGH 616
Query: 759 IFVSVHLADDVRSKVDV----KDKVLEKSLNSVQHKSDK--VYNTLSGFPVVDRWKSWEN 812
IFV VHL +DV + D L+ + S + +K +NTLSG D SWE
Sbjct: 617 IFVCVHLNEDVNMVMGWDGGDADDTLDGEVESARPLIEKGHQFNTLSGRETADLRNSWEM 676
Query: 813 F-KMLDNTNTMEQLGR-----------IKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
F ++L + G ++L+V+VEDTGVGIPL Q R+FTPFMQADSST
Sbjct: 677 FERLLTQEQSYRSAGDRETWNYDSNDVVELVVSVEDTGVGIPLHVQDRVFTPFMQADSST 736
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQ---- 916
SRTYGGTGIGLSISRCLVELM GE+ FVS PG GSTF+FT F N + +
Sbjct: 737 SRTYGGTGIGLSISRCLVELMSGEMDFVSSPGVGSTFTFTAEFQRVPANVPESILREGSN 796
Query: 917 ---QYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
Q P + F+G+R LV+D + + EV + E+ V N S +
Sbjct: 797 CLLQTPPLPTCFQGMRVLVVDGRQV--EVAHSVPEAAELLTTVVNR----GSRGTRNSRG 850
Query: 974 SVLPQLALVLIDKDVWDKEIGLVL----------------------HYMLKQQRRKGGLE 1011
S+ + ++ +DKD W G+ Y L R G +
Sbjct: 851 SISADIEMIFVDKDAWGPGTGMNFRSLLSECYMESPSSYHNARASYQYRLTAGRLPIGFQ 910
Query: 1012 ISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQE--------DPES 1062
+ ++ K+ L+ATS++ + + +K+ G V T++ KPLR S++ C ++ DP
Sbjct: 911 V-HSMQKMVLVATSMNGLELEMVKASGFVDTVIRKPLRASLVAACLKQILGVGDGRDPGQ 969
Query: 1063 SKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
+ + SL +LL GK+ILVVDDN VNR+VA GAL K+GA V CV GRAA+ KL
Sbjct: 970 ----ELRGGVNSLQNLLSGKRILVVDDNPVNRKVAAGALNKYGAQVECVHSGRAAIQKLK 1025
Query: 1123 PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ-IASGESSAEMFGNVGLWHVPILA 1181
PPHNFDACFMD+QMPEMDGFQAT IR E +Q +A+G + FG +HVPILA
Sbjct: 1026 PPHNFDACFMDVQMPEMDGFQATGLIRKAETLAADQWLAAGLPT---FGV--RFHVPILA 1080
Query: 1182 MTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221
MTADVIQA++E+CM+CGMD YV+KPF++ QLY AVA+ F
Sbjct: 1081 MTADVIQATSEECMRCGMDGYVAKPFDEHQLYQAVAKHFF 1120
>gi|57900198|dbj|BAD88305.1| putative histidine kinase 2 [Oryza sativa Japonica Group]
gi|57900221|dbj|BAD88327.1| putative histidine kinase 2 [Oryza sativa Japonica Group]
Length = 866
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/896 (54%), Positives = 623/896 (69%), Gaps = 57/896 (6%)
Query: 344 TFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENL 403
TF Y ERTAFERPLTSGVAYA++V H EREQFE+Q GW IKKM + P
Sbjct: 2 TFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPGPGPG 61
Query: 404 DPAPVQ-----DEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLL 458
D A + +EYAPVIF+Q+ H++S DM+SG EDR+NILRAR SGKGVLT PFKLL
Sbjct: 62 DAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAPFKLL 121
Query: 459 KSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVV 518
+N LGV+LT+ VY +LP A P +RI+A +GYLG +D+ +LVEKLL QLAS+++I+V
Sbjct: 122 -NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIMV 180
Query: 519 NVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASI 578
NVYDTTN S PI+MYG D T +G+ VS L+FGDPSRKHEMHCRF++KPP PW AI +S
Sbjct: 181 NVYDTTNES-PISMYGDD-TGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITSSF 238
Query: 579 GVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMN 638
G +VI LL GHIF A ++RIA+VE+D+H+M ELK RAE ADVAKSQFLATVSHEIRTPMN
Sbjct: 239 GTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTPMN 298
Query: 639 GVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698
GVLGMLQMLMDT+LD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE E VPF L
Sbjct: 299 GVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELETVPFDLR 358
Query: 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGH 758
V D++LSLF KA +KG+ELA+YVSD+VP+++IGDPGR RQIITNLVGNSIKFT+ +GH
Sbjct: 359 TVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTE-RGH 417
Query: 759 IFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDN 818
I+++VH+ ++V S ++V+ + + NTLSG+PV +R SWE+ ++ +
Sbjct: 418 IYLTVHVVEEVMSCLEVETGI-------------QNTNTLSGYPVANRRCSWESIRLFNR 464
Query: 819 T-NTMEQ------LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGL 871
++ E+ I L+++VEDTGVGIP EAQ R+FTPFMQ S +R +GGTGIGL
Sbjct: 465 ELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGL 524
Query: 872 SISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRAL 931
SIS+CLV LM GEIGF S+P GSTF+FT D K SEF+G+ AL
Sbjct: 525 SISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIK-------SSEFKGINAL 577
Query: 932 VIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDK 991
V+D + +RA+VT+YHLQRL + + + S L+ T+ LVLIDK+ W K
Sbjct: 578 VVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTA-----KLVLIDKETWLK 632
Query: 992 E---IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE-TDRDELKSDGIVTLLTKPL 1047
E L+++ + + + PK+FLL +S S + + + ++ KPL
Sbjct: 633 ESHCTPLLVNKLRNNDK--------PDSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPL 684
Query: 1048 RLSVLIGCFQEDPESSKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKH 1104
R S+L + K+ + +LG LL KQI+VVDDN+VN +VA GALKK+
Sbjct: 685 RASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKY 744
Query: 1105 GAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGES 1164
GA VTC D G+ A+ L PPHNFDACFMD+QMPEMDGF+AT +IR +E ++NE+I GE+
Sbjct: 745 GAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEA 804
Query: 1165 SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E ++ W PILAMTADVIQA++E+C+K MD YVSKPFE EQLY+ VARFF
Sbjct: 805 PPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFF 859
>gi|198387188|gb|ACH87040.1| hybrid type histidine kinase isoform b [Oryza sativa Indica Group]
Length = 865
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/896 (53%), Positives = 621/896 (69%), Gaps = 58/896 (6%)
Query: 344 TFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENL 403
TF Y RTAFERPLTSGVAYA++V H ERE FE+Q GW IKKM + P
Sbjct: 2 TFARYAVRTAFERPLTSGVAYAVRVTHGEREHFERQQGWTIKKMYSSSNKKQSSSGPGPG 61
Query: 404 DPAPVQ-----DEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLL 458
D A + +EYAPVIF+Q+ H++S DM+SG EDR+NIL +R SGKGVLT PFKLL
Sbjct: 62 DAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRKNILYSRKSGKGVLTAPFKLL 121
Query: 459 KSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVV 518
+N LGV+ T+ VY ++LP +A P +RI+A +GYLG +D+ +LVEKLL QLAS+++I+V
Sbjct: 122 -NNRLGVISTYTVYKSELPANARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIMV 180
Query: 519 NVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASI 578
NVYDTTN + PI+MYG D T +G+ VS L+FGDPSRKHEMHCRF++KPP PW AI +S
Sbjct: 181 NVYDTTNEN-PISMYGDD-TGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITSSF 238
Query: 579 GVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMN 638
G +VI LL GHIF A ++RIA+VE+D+H+M ELK RAE ADVAKSQFLATVSHEIRTPMN
Sbjct: 239 GTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTPMN 298
Query: 639 GVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698
GVLGMLQMLMDT+LD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE E VPF L
Sbjct: 299 GVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELETVPFDLR 358
Query: 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGH 758
V D++LSLF KA +KG+ELA+YVSD+VP+++IGDPGR RQIITNLVGNSIKFT+ +GH
Sbjct: 359 TVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTE-RGH 417
Query: 759 IFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDN 818
I+++VH+ ++V S ++V+ + + NTLSG+PV +R SWE+ ++ +
Sbjct: 418 IYLTVHVVEEVMSCLEVETGI-------------QNTNTLSGYPVANRRCSWESIRLFNR 464
Query: 819 T-NTMEQ------LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGL 871
++ E+ I L+++VEDTGVGIP EAQ R+FTPFMQ S +R +GGTGIGL
Sbjct: 465 ELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGL 524
Query: 872 SISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRAL 931
SIS+CLV LM GEIGF S+P GSTF+FT D K SEF+G+ AL
Sbjct: 525 SISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIK-------SSEFKGINAL 577
Query: 932 VIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDK 991
V+D + +RA+VT+YHLQRL + + + S L+ T+ LVLIDK+ W K
Sbjct: 578 VVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTA-----KLVLIDKETWLK 632
Query: 992 E---IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE-TDRDELKSDGIVTLLTKPL 1047
E L+++ + + + PK+FLL +S S + + + ++ KPL
Sbjct: 633 ESHCTPLLVNKLRNNDK--------PDSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPL 684
Query: 1048 RLSVLIGCFQEDPESSKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKH 1104
R S+L + K+ + +LG LL KQI+VVDDN+VN +VA GALKK+
Sbjct: 685 RASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVA-GALKKY 743
Query: 1105 GAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGES 1164
GA VTC D G+ A+ L PPHNFDACFMD+QMPEMDGF+AT +IR +E ++NE+I GE+
Sbjct: 744 GAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEA 803
Query: 1165 SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E ++ W PILAMTADVIQA++E+C+K MD YVSKPFE EQLY+ VARFF
Sbjct: 804 PPEC-ASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFF 858
>gi|413933250|gb|AFW67801.1| putative histidine kinase family protein [Zea mays]
Length = 966
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/936 (52%), Positives = 617/936 (65%), Gaps = 76/936 (8%)
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCT 399
V Q TF +YT RT+FERPL SGVAYA +V+H++RE FE+ GW IK M+ E
Sbjct: 52 VLQNTFADYTARTSFERPLLSGVAYAQRVVHADREGFERHQGWIIKTMKHE--------- 102
Query: 400 PENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSG-------------------------- 433
P+P QDEYAPV++SQETVS+I +DMMSG
Sbjct: 103 -----PSPAQDEYAPVVYSQETVSYIEGLDMMSGEVCGDVSRSFLADGLQLFSAGVGSEP 157
Query: 434 -------KEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRI 486
+EDRENILR+RASGK VLT PF+L+ SNHLGVVLTF VY+ DLP DA E R+
Sbjct: 158 GCVSVVLQEDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHADLPSDAKEEDRV 216
Query: 487 EATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVT--DTGLLR 544
AT GYLG ++DV SLVE LL QLA Q +VVNVYD TN S P+ MYG +V +
Sbjct: 217 AATAGYLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEVPLGNPSPSH 276
Query: 545 VSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVEND 604
+ LDFGDP RKH M CR++ KP VPW+AI+ GV VI +LVG+I AA +R V+ D
Sbjct: 277 ICMLDFGDPFRKHHMVCRYRNKPHVPWSAISTPSGVFVICMLVGYIAGAAWSRYDNVKED 336
Query: 605 YHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAH 664
+M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML ML+DT+L + Q D+AQTA
Sbjct: 337 CRKMEELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQ 396
Query: 665 NSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724
GK LISLIN+VLD+AKIE+ +L+ E VPF L +LD+V+SLFSSK+ +KGIEL +YVS
Sbjct: 397 VCGKALISLINEVLDRAKIEARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVS 456
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSL 784
+RVPE+++GDPGRFRQIITNLVGNSIKFT+ +GHIFV VHLAD + K + + +
Sbjct: 457 ERVPEILLGDPGRFRQIITNLVGNSIKFTE-RGHIFVQVHLADHSNLATESKVEPVANGM 515
Query: 785 NSVQHKSDKV-------YNTLSGFPVVDRWKSWENFKML----DNTNTMEQLG-RIKLLV 832
N H +K NTLSGF D SWENFK+L N E + ++ L+V
Sbjct: 516 NG--HTDEKTAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVV 573
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
+VEDTG+GIPL+AQ ++FTPFMQADSSTSRTYGGTGIGLSIS+CLVELMGG+I FVS P
Sbjct: 574 SVEDTGIGIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPH 633
Query: 893 TGSTFSFTVTFTEGERNSL-DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
GSTF+FT +R+++ D K P S F+GL AL++D + +RA VT+YHLQRL
Sbjct: 634 VGSTFTFTAVLKRCDRSAIGDSKPVMLHPLPSSFKGLSALLVDRRPVRATVTKYHLQRLG 693
Query: 952 MAVHVANSMQLACSYLS--DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009
+A V +++LA LS + S + + Q ++LI+ D W I + L L + ++ G
Sbjct: 694 IACDVVATIELALGVLSGRNGSSLTSMKQPCMLLIESDSWGFNIDVSLRSRLLEMKQNGH 753
Query: 1010 LEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC-FQEDPESSKKLQQ 1068
+ LPKI LLA + S ++ D ++ TKPL+ S L C FQ ++
Sbjct: 754 THV---LPKIILLAAAESGKLKEHYAVDSVI---TKPLKASALAACLFQTLGIKQSSNER 807
Query: 1069 KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
SL LL GK ILVVDDN VN RVA G LKK GA V CV+ G+ A+ L P+ F
Sbjct: 808 SDNSGSLYGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVPYKFH 867
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQ-IASGESSAEMFGNVGLWHVPILAMTADVI 1187
C MD+QMPEMDGF+AT QIR +E + NEQ +A S + W +P+LAMTADVI
Sbjct: 868 LCLMDIQMPEMDGFEATKQIRAMEAKANEQAVACDNSEIDGATRAARWRLPVLAMTADVI 927
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
QA++E+C KCGMD YV+KPFE++QL+ A+ +F G
Sbjct: 928 QATHEECTKCGMDGYVTKPFEEKQLFQALQKFLDPG 963
>gi|27311849|gb|AAO00890.1| histidine kinase-like protein [Arabidopsis thaliana]
gi|30725488|gb|AAP37766.1| At5g35750 [Arabidopsis thaliana]
Length = 652
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/663 (65%), Positives = 530/663 (79%), Gaps = 15/663 (2%)
Query: 559 MHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAA 618
MHCRFK K P+PWTAI SI V+VIT LVG+I + AINRIA VE D +M ELKARAEAA
Sbjct: 1 MHCRFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAA 60
Query: 619 DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVL 678
D+AKSQFLATVSHEIRTPMNGVLGML+MLMDT+LDA Q+DYAQTAH SGKDL SLIN+VL
Sbjct: 61 DIAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVL 120
Query: 679 DQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRF 738
DQAKIESGRLE E VPF + +LDNV SL S KAN+KGIELA+YVS +VP+VV+GDP RF
Sbjct: 121 DQAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRF 180
Query: 739 RQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTL 798
RQIITNLVGNSIKFTQ++GHIF+SVHLAD+V+ + ++D VL++ L +S + T+
Sbjct: 181 RQIITNLVGNSIKFTQERGHIFISVHLADEVKEPLTIEDAVLKQRLALGCSESGE---TV 237
Query: 799 SGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858
SGFP V+ W SW+NFK +T + + +IKLLVTVEDTGVGIP++AQ RIFTPFMQADS
Sbjct: 238 SGFPAVNAWGSWKNFKTCYSTES-QNSDQIKLLVTVEDTGVGIPVDAQGRIFTPFMQADS 296
Query: 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQY 918
STSRTYGGTGIGLSIS+ LVELM GE+GFVSEPG GSTFSFT F + E N+ K +++
Sbjct: 297 STSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVFGKAETNTSITKLERF 356
Query: 919 VPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQ 978
+ EF GLRALVID+++IRAEVTRY L+RL ++ + +S+++AC TC S L
Sbjct: 357 DLAIQEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLRMAC-----TCCISKLEN 411
Query: 979 LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDG 1038
LA++LIDKD W+KE VL + + + + +R +PKIFLLATS + T+R E+KS G
Sbjct: 412 LAMILIDKDAWNKEEFSVLDELFTRSK----VTFTR-VPKIFLLATSATLTERSEMKSTG 466
Query: 1039 IV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVA 1097
++ ++ KPLR+SVLI C QE + KK Q R++ +LGHLL+ KQILVVDDN+VNRRVA
Sbjct: 467 LIDEVVIKPLRMSVLICCLQETLVNGKKRQPNRQRRNLGHLLREKQILVVDDNLVNRRVA 526
Query: 1098 EGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE 1157
EGALKK+GAIVTCV+ G+AA+ L PPHNFDACFMDLQMPEMDGF+AT ++R LE EIN+
Sbjct: 527 EGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGFEATRRVRELEREINK 586
Query: 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
+IASGE SAEMF WHVPILAMTADVIQA++E+CMKCGMD YVSKPFE+E LYTAVA
Sbjct: 587 KIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMDGYVSKPFEEEVLYTAVA 646
Query: 1218 RFF 1220
RFF
Sbjct: 647 RFF 649
>gi|413933249|gb|AFW67800.1| putative histidine kinase family protein [Zea mays]
Length = 806
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/813 (54%), Positives = 556/813 (68%), Gaps = 29/813 (3%)
Query: 430 MMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEAT 489
MMSG+EDRENILR+RASGK VLT PF+L+ SNHLGVVLTF VY+ DLP DA E R+ AT
Sbjct: 1 MMSGEEDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHADLPSDAKEEDRVAAT 59
Query: 490 LGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVT--DTGLLRVSN 547
GYLG ++DV SLVE LL QLA Q +VVNVYD TN S P+ MYG +V + +
Sbjct: 60 AGYLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEVPLGNPSPSHICM 119
Query: 548 LDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHE 607
LDFGDP RKH M CR++ KP VPW+AI+ GV VI +LVG+I AA +R V+ D +
Sbjct: 120 LDFGDPFRKHHMVCRYRNKPHVPWSAISTPSGVFVICMLVGYIAGAAWSRYDNVKEDCRK 179
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML ML+DT+L + Q D+AQTA G
Sbjct: 180 MEELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCG 239
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
K LISLIN+VLD+AKIE+ +L+ E VPF L +LD+V+SLFSSK+ +KGIEL +YVS+RV
Sbjct: 240 KALISLINEVLDRAKIEARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERV 299
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
PE+++GDPGRFRQIITNLVGNSIKFT+ +GHIFV VHLAD + K + + +N
Sbjct: 300 PEILLGDPGRFRQIITNLVGNSIKFTE-RGHIFVQVHLADHSNLATESKVEPVANGMNG- 357
Query: 788 QHKSDKV-------YNTLSGFPVVDRWKSWENFKML----DNTNTMEQLG-RIKLLVTVE 835
H +K NTLSGF D SWENFK+L N E + ++ L+V+VE
Sbjct: 358 -HTDEKTAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVSDKVTLVVSVE 416
Query: 836 DTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGS 895
DTG+GIPL+AQ ++FTPFMQADSSTSRTYGGTGIGLSIS+CLVELMGG+I FVS P GS
Sbjct: 417 DTGIGIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGS 476
Query: 896 TFSFTVTFTEGERNSL-DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
TF+FT +R+++ D K P S F+GL AL++D + +RA VT+YHLQRL +A
Sbjct: 477 TFTFTAVLKRCDRSAIGDSKPVMLHPLPSSFKGLSALLVDRRPVRATVTKYHLQRLGIAC 536
Query: 955 HVANSMQLACSYLS--DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
V +++LA LS + S + + Q ++LI+ D W I + L L + ++ G +
Sbjct: 537 DVVATIELALGVLSGRNGSSLTSMKQPCMLLIESDSWGFNIDVSLRSRLLEMKQNGHTHV 596
Query: 1013 SRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC-FQEDPESSKKLQQKRK 1071
LPKI LLA + S ++ D ++ TKPL+ S L C FQ ++
Sbjct: 597 ---LPKIILLAAAESGKLKEHYAVDSVI---TKPLKASALAACLFQTLGIKQSSNERSDN 650
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
SL LL GK ILVVDDN VN RVA G LKK GA V CV+ G+ A+ L P+ F C
Sbjct: 651 SGSLYGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVPYKFHLCL 710
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQ-IASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMPEMDGF+AT QIR +E + NEQ +A S + W +P+LAMTADVIQA+
Sbjct: 711 MDIQMPEMDGFEATKQIRAMEAKANEQAVACDNSEIDGATRAARWRLPVLAMTADVIQAT 770
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
+E+C KCGMD YV+KPFE++QL+ A+ +F G
Sbjct: 771 HEECTKCGMDGYVTKPFEEKQLFQALQKFLDPG 803
>gi|449518427|ref|XP_004166243.1| PREDICTED: histidine kinase 4-like, partial [Cucumis sativus]
Length = 756
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/758 (53%), Positives = 518/758 (68%), Gaps = 39/758 (5%)
Query: 492 YLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLD 549
YLG ++DV SLVE LL QLA Q I+VNVYD TN S P+ MYG D L S LD
Sbjct: 1 YLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLSHESKLD 60
Query: 550 FGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMM 609
FGDP RKH+M CR+ QK P WTA+ + VI LLVG+I + A I +VE+D+HEM
Sbjct: 61 FGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQ 120
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
ELK RAEAAD+AKSQFLATVSHEIRTPMNG+LGML +L+DTEL + Q DYAQTA GK
Sbjct: 121 ELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKA 180
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
LI+LIN+VLD+AKIE+G+LE E VPF L +LD+VLSLFS K+ KG+ELA++VSD+VPE
Sbjct: 181 LIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPE 240
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK--VLEKSLNSV 787
+V+GDPGRFRQ+ITNLVGNS+KFT+ GHIFV V LA+ ++K + V S +
Sbjct: 241 IVMGDPGRFRQVITNLVGNSVKFTE-HGHIFVKVQLAEQSMVSTNIKSETHVNGNSEDGA 299
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDN-------------TNTMEQLGRIKLLVTV 834
H + + TLSGF D SW+ FK L N TN + + + ++++V
Sbjct: 300 SHNKHQ-FETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNEISDI--VTVMISV 356
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
EDTG+GIPL AQ R+F FMQADSSTSR YGGTGIGL IS+CLVELMGG+I FVS+P G
Sbjct: 357 EDTGIGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKPQVG 416
Query: 895 STFSFTVTFTEGERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
STFSFT F E+ +++ K S FRGL+A+V+D K +RA VT+YHL+RL +
Sbjct: 417 STFSFTAVFGRCEKKATVNIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGIL 476
Query: 954 VHVANSMQLACSYLSDTCS--TSVLPQLALVLIDKDVW--DKEIGL--VLHYMLKQQRRK 1007
V VA+S+++A + S +S + Q ++L++KD++ ++E G +LH + +Q
Sbjct: 477 VEVASSVKMAAALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQLDWKQNGH 536
Query: 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKL 1066
+ LPK+ LLAT +S + D+ K G TL+ KPLR S++ C Q+ S KK
Sbjct: 537 -----TLKLPKLILLATCMSTVEFDKAKEMGFSDTLIMKPLRASMIGACLQQVLGSGKKR 591
Query: 1067 QQKRKKPSLGHLLK----GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
Q + + + LK GK+ILVVDDN VNRRVA GALKK GA V CV+ G+AA+ L
Sbjct: 592 QLGKDMANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALALLQ 651
Query: 1123 PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAM 1182
PH+FDACFMD+QMPEMDGF+AT +IR +E++ NE + ES+ + WHVPILAM
Sbjct: 652 LPHSFDACFMDIQMPEMDGFEATRRIRMMESKENEVLIR-ESNGKENARKDEWHVPILAM 710
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
TADVI A+ ++C+KCGMD YVSKPFE+E LY AVA+FF
Sbjct: 711 TADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFF 748
>gi|357521453|ref|XP_003631015.1| Histidine kinase [Medicago truncatula]
gi|355525037|gb|AET05491.1| Histidine kinase [Medicago truncatula]
Length = 760
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/757 (53%), Positives = 522/757 (68%), Gaps = 38/757 (5%)
Query: 492 YLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGP--DVTDTGLLRVSNLD 549
Y+G S+DV SLVE LL QLA Q I+VNVYD TN+S P+ MYG + D L+ S LD
Sbjct: 9 YVGGSFDVESLVENLLGQLAGHQAILVNVYDVTNSSDPLIMYGNQYEEGDVSLVHESKLD 68
Query: 550 FGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMM 609
FGDP RKH+M CR+ QK P WTA++ +I VI LL+G+I + A N I +VE+D+HEM
Sbjct: 69 FGDPYRKHQMICRYHQKAPPNWTALSTAILFFVILLLIGYILYGAGNHIVKVEDDFHEMQ 128
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
ELK RAEAADVAKSQFLATVSHEIRTPMNG+LGML +L+ TEL++ Q DYAQTA GK
Sbjct: 129 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKA 188
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
LI+LIN+VLD+AKIE+G+LE E VPF L +LD+VLSLFS K+ KG+ELA++VSD+VP+
Sbjct: 189 LIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPD 248
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
+V+GDPGRFRQI+TNLVGNS+KFT+ +GHIFV VHL+++ + + K + +
Sbjct: 249 IVMGDPGRFRQIVTNLVGNSVKFTE-RGHIFVKVHLSENRKPVTNGKHETYRNGGSEEVV 307
Query: 790 KSDKVYN--TLSGFPVVDRWKSWENFKML------------DNTNTMEQLGRIKLLVTVE 835
+ YN TLSG+ D +W+NF L + E ++ L+V VE
Sbjct: 308 HASGGYNLKTLSGYEAADERNNWDNFNHLIADEEFFCDASTKKVASNEFYEQVTLMVCVE 367
Query: 836 DTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGS 895
DTG+GIP AQ RIF PF+QADSSTSR YGGTGIGLSIS+CLVELMGG+I F+S P GS
Sbjct: 368 DTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGS 427
Query: 896 TFSFTVTFTEGERNSL-DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
TFSFT F ++N + + K Y S FRGL+A+V+D K +RA VTRYHL+RL + V
Sbjct: 428 TFSFTADFGIFKKNPITEVKKVNYEDLPSSFRGLKAVVVDGKPVRAAVTRYHLKRLGIQV 487
Query: 955 HVANSMQLACSYLS-DTCSTSVLPQLALVLIDKDVWD-KEIGLVLHYMLKQQRRKGGLEI 1012
VAN++ A S + S++ L Q ++ ++KD W E G+ + ++Q K I
Sbjct: 488 KVANAINKAVSLCGKNGASSTGLFQPDIIFVEKDSWVCGEDGI---FSVRQLDWKQNGHI 544
Query: 1013 SRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+ +P++ LLAT+IS + D+ KS G T++ KPLR S++ C Q+ + KK Q ++
Sbjct: 545 FK-MPQMILLATNISNDEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKE 603
Query: 1072 KP----SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
P S+ LL GK+ILVVDDN+VNRRVA GALK GA V C D G+AA++ L PH F
Sbjct: 604 MPNGSTSVRSLLFGKKILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEMLQFPHKF 663
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIAS--GESSAEMFGNVGLWHVPILAMTAD 1185
DACFMD+QMPEMDGF+AT +IR +E NE+ S GE +E +H+PILAMTAD
Sbjct: 664 DACFMDIQMPEMDGFEATRRIREMERTANEETNSECGERKSE-------FHLPILAMTAD 716
Query: 1186 VIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
VI A+ E+C+KCGMD YVSKPFE+E LY AVA+FF +
Sbjct: 717 VIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFQT 753
>gi|297610356|ref|NP_001064436.2| Os10g0362300 [Oryza sativa Japonica Group]
gi|255679337|dbj|BAF26350.2| Os10g0362300 [Oryza sativa Japonica Group]
Length = 598
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 321/583 (55%), Positives = 417/583 (71%), Gaps = 9/583 (1%)
Query: 642 GMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVL 701
GMLQMLMDTELD Q D+ TA SGK LI+LIN+VLD AKIESG++E E V F + D+L
Sbjct: 12 GMLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDIL 71
Query: 702 DNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFV 761
DNV+SLFS K+ KGIELA+ VSD+VP+V+IGDP RFRQIITNLVGNS+KFT+ +GHIF+
Sbjct: 72 DNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTE-QGHIFI 130
Query: 762 SVHLADDVRSKVDVKDKVLEKSLN-SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTN 820
VHL ++V+ K++ D +++ + K+ YNTLSG V + K+ E+F+M +++
Sbjct: 131 RVHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKDSS 190
Query: 821 TMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVEL 880
+ + + LLVTVEDTG+GI +AQ RIFTPFMQAD STSRTYGGTGIGLSI++ LVEL
Sbjct: 191 --DAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVEL 248
Query: 881 MGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRA 940
MGGEIGFVS+PG STFSFT F E ++ D K P +F+G+RALV+D + RA
Sbjct: 249 MGGEIGFVSKPGVSSTFSFTAIFKENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARA 308
Query: 941 EVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYM 1000
EVT YHL+RL + +A + + A S L ++C++SV L +VL+DK+ W ++ GL
Sbjct: 309 EVTMYHLRRLGIQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRC 368
Query: 1001 LKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDP 1060
L R KG L+ + +PK FLLA SI+ D D L+ G + KPLRLS + C +
Sbjct: 369 LIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYSNSIRKPLRLSTVAACLSK-- 426
Query: 1061 ESSKKLQQKRKKPS---LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
L +R + + L +L GK ILVVDDN VNR VA GALKK+GAIVTCVD G+ A
Sbjct: 427 ALGVGLTGRRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEA 486
Query: 1118 VDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177
+ +L PPH FDACFMD+QMPEMDGF+AT +R +E++IN+ I +GE S+E++GN WHV
Sbjct: 487 ISRLQPPHKFDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHV 546
Query: 1178 PILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
PILAMTADVIQA+ E CM+CGMD YV+KPFE++QLY+AVA F
Sbjct: 547 PILAMTADVIQATFEGCMECGMDGYVAKPFEEQQLYSAVAHFL 589
>gi|413938769|gb|AFW73320.1| putative histidine kinase family protein [Zea mays]
Length = 505
Score = 593 bits (1530), Expect = e-166, Method: Compositional matrix adjust.
Identities = 299/508 (58%), Positives = 368/508 (72%), Gaps = 17/508 (3%)
Query: 259 RSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSM 318
R+ WR +VL + S + W L+ R +E L SMC+ERARMLQ+QF V++
Sbjct: 9 RTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTV 68
Query: 319 NHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEK 378
NHVHA+AIL+STF+ K P A+DQ TF +YT RT+FERPL +GVA+A +V H ERE FE
Sbjct: 69 NHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFES 128
Query: 379 QHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRE 438
Q GW + M+ E PAP Q EYAPVIFSQ+TVS++ IDMMSG+EDRE
Sbjct: 129 QQGWVMNTMQRE--------------PAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRE 174
Query: 439 NILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYD 498
NI RAR +GK VLT PF+LL SNHLGVVLTFAVY DLP DA+ EQR+EAT+GYLG ++D
Sbjct: 175 NIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFD 234
Query: 499 VPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--TGLLRVSNLDFGDPSRK 556
V SLVE LL +LA Q IVVNVYD TNAS + +YGP D L VS LDFGDP RK
Sbjct: 235 VESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRK 294
Query: 557 HEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAE 616
HEM CR++QK P+PW+AI +G VI +L+G+ AA +R +V D +M ELK +AE
Sbjct: 295 HEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAE 354
Query: 617 AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIND 676
AADVAKSQFLATVSHEIRTPMNGVLGML ML+ T+L Q DYAQTA G+ LI+LIND
Sbjct: 355 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLIND 414
Query: 677 VLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPG 736
VLD+AKIE+G+LE E VPF L ++D+V+SLFSSK+ +K IELA++V D VP+VVIGDP
Sbjct: 415 VLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPW 474
Query: 737 RFRQIITNLVGNSIKFTQDKGHIFVSVH 764
RFRQI+TNLVGN++K + ++ VS H
Sbjct: 475 RFRQILTNLVGNAVKVSSQFWYL-VSSH 501
>gi|413951478|gb|AFW84127.1| putative histidine kinase family protein [Zea mays]
Length = 564
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 296/594 (49%), Positives = 390/594 (65%), Gaps = 53/594 (8%)
Query: 643 MLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLD 702
MLQMLMDT+LD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE E VPF L V D
Sbjct: 1 MLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEAVPFDLRTVCD 60
Query: 703 NVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVS 762
++LSLF KA +KG+ELA++VSD+VP+ +IGDPGR RQIITNLVGNSIKFT+ KGHI+++
Sbjct: 61 DILSLFCGKAQEKGLELAVFVSDQVPQALIGDPGRIRQIITNLVGNSIKFTE-KGHIYLT 119
Query: 763 VHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLD---NT 819
VH+ +++ + ++V+ + NTLSG+PV +R +SWENF++ N+
Sbjct: 120 VHVVEEIMNCLEVE-------------TGTQSANTLSGYPVANRKRSWENFRVFSRELNS 166
Query: 820 NTME----QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISR 875
+ M I L+++VEDTGVGIP +AQ R+FTPFMQ S +R +GGTGIGLSIS+
Sbjct: 167 SEMPFAPIASDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISK 226
Query: 876 CLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDD 935
CLV LM GEIGF S+P GSTF+FT T + + K SEF+G+ ALV+D
Sbjct: 227 CLVGLMRGEIGFASKPQVGSTFTFTAVLTRAHSSRNENKS-------SEFKGINALVVDH 279
Query: 936 KSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGL 995
+ +RA+VTRYHLQRL + + + S ++ C + + LVLIDK+ W KE
Sbjct: 280 RPVRAKVTRYHLQRLGVQTELTTDLDQYISKIN--CGSQI---AKLVLIDKETWLKE-SH 333
Query: 996 VLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV------TLLTKPLRL 1049
+ ++ + R K + + K+FLL E + KS+ + ++ KPLR
Sbjct: 334 SMPLLVTKLRNKDQPDST----KLFLL-----ENPKSTAKSNSHIFREFNLNVIMKPLRA 384
Query: 1050 SVLIGCFQEDPESSKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGA 1106
S+L KL + +LG LL K+ILVVDDN+VN +VA GALKK+GA
Sbjct: 385 SMLQVSLHRALGGIDKLHCRNGVLGNSTLGSLLHKKRILVVDDNIVNLKVAAGALKKYGA 444
Query: 1107 IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSA 1166
VTC D G+ A+ +L PPH+FDACFMD+QMPEMDGF+AT +IR +E ++NEQI GE+
Sbjct: 445 EVTCADSGKKAITQLKPPHSFDACFMDIQMPEMDGFEATKRIRVMERDLNEQIERGEAPP 504
Query: 1167 EMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E G + W PILAMTADVIQA++EQC+K MD YVSKPFE EQLY VARFF
Sbjct: 505 ECAG-LRQWRTPILAMTADVIQATHEQCLKSEMDGYVSKPFEGEQLYREVARFF 557
>gi|13129468|gb|AAK13126.1|AC083945_1 Histidine-kinase like protein [Oryza sativa Japonica Group]
Length = 627
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/478 (52%), Positives = 333/478 (69%), Gaps = 9/478 (1%)
Query: 719 LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778
+A+ VSD+VP+V+IGDP RFRQIITNLVGNS+KFT+ +GHIF+ VHL ++V+ K++ D
Sbjct: 1 MAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTE-QGHIFIRVHLIEEVKRKMEALDD 59
Query: 779 VLEKSLN-SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+++ + K+ YNTLSG V + K+ E+F+M +++ + + + LLVTVEDT
Sbjct: 60 TSPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKDSS--DAIDSVNLLVTVEDT 117
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI +AQ RIFTPFMQAD STSRTYGGTGIGLSI++ LVELMGGEIGFVS+PG STF
Sbjct: 118 GIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSSTF 177
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
SFT F E ++ D K P +F+G+RALV+D + RAEVT YHL+RL + +A
Sbjct: 178 SFTAIFKENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLGIQCDLA 237
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ + A S L ++C++SV L +VL+DK+ W ++ GL L R KG L+ + +P
Sbjct: 238 ATSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLKSWQTMP 297
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS--- 1074
K FLLA SI+ D D L+ G + KPLRLS + C + L +R + +
Sbjct: 298 KFFLLAGSITPADSDCLRLAGYSNSIRKPLRLSTVAACLSK--ALGVGLTGRRSRDNSLV 355
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
L +L GK ILVVDDN VNR VA GALKK+GAIVTCVD G+ A+ +L PPH FDACFMD+
Sbjct: 356 LRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFMDV 415
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
QMPEMDGF+AT +R +E++IN+ I +GE S+E++GN WHVPILAMTADVIQA+ E
Sbjct: 416 QMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHVPILAMTADVIQATFE 473
>gi|63095199|gb|AAY32330.1| AHK1 [Phyllostachys praecox]
Length = 409
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/413 (58%), Positives = 302/413 (73%), Gaps = 22/413 (5%)
Query: 493 LGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTG--LLRVSNLDF 550
LG ++DV SLVE LL +LA Q IVVNVYD TNA P+ MYGP D LL VS LD
Sbjct: 1 LGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNALEPMVMYGPQSPDGKVLLLHVSMLDL 60
Query: 551 GDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMME 610
GDP R+HEM CR+ QKPP+PW+AI +G VI +LVG+I AA +R +V D +M E
Sbjct: 61 GDPFRRHEMRCRYWQKPPMPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCRKMEE 120
Query: 611 LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDL 670
LK +AEAADVAKSQFLATVSHEIRTPMNGVLGML ML+ T+L Q D+AQTA G+ L
Sbjct: 121 LKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTLTQKDHAQTAQMCGRAL 180
Query: 671 ISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV 730
I+LINDVLD+AKIE+G+LE E VPF L ++D+V+SLFSSK+ +K IELA++V D VPEV
Sbjct: 181 ITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPEV 240
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS---- 786
VIGDP RFRQI+TNLVGN++KFT+ +GH+FV V LA++ S V+ D+VL +LN
Sbjct: 241 VIGDPWRFRQILTNLVGNAVKFTE-RGHVFVRVCLAEN--SNVE-DDQVLNGTLNGKDGK 296
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKML--DNTNTMEQL----------GRIKLLVTV 834
++ ++ NTLSGF D SWE FK+L D + +++L + L++++
Sbjct: 297 IESTANGALNTLSGFQAADERNSWEYFKLLLSDKESLLDELEGEKSNQNDSDSVTLMISI 356
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF 887
EDTGVGIPL AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CL ELMGG+I F
Sbjct: 357 EDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 409
>gi|28916441|gb|AAO59549.1| histidine kinase [Oryza sativa Indica Group]
Length = 497
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/524 (46%), Positives = 337/524 (64%), Gaps = 49/524 (9%)
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
KA +KG+ELA+YVSD+VP+++IGDPGR RQIITNLVGNSIKFT+ +GHI+++VH+ ++V
Sbjct: 2 KAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTE-RGHIYLTVHVVEEVM 60
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNT-NTMEQL---- 825
S ++V+ + + NTLSG+PV +R +SWE+ ++ + ++ E+
Sbjct: 61 SCLEVETGI-------------QNTNTLSGYPVANRRRSWESIRLFNRELHSSEKSFAPI 107
Query: 826 --GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
I L+++VEDTGVGIP EAQ R+FTPFMQ S +R +GGTGIGLSIS+CLV LM G
Sbjct: 108 ASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKG 167
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
EIGF S+P GSTF+FT D K SEF+G+ ALV+D + +RA+VT
Sbjct: 168 EIGFASKPHVGSTFTFTAVLMRAHCKGNDIKS-------SEFKGINALVVDHRPVRAKVT 220
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE---IGLVLHYM 1000
+YHLQRL + + + S L+ T+ LVLIDK+ W KE L+++ +
Sbjct: 221 KYHLQRLGVKTELTAELNQFISKLNSGSLTA-----KLVLIDKETWLKESHCTPLLVNKL 275
Query: 1001 LKQQRRKGGLEISRNLPKIFLLATSISE-TDRDELKSDGIVTLLTKPLRLSVLIGCFQED 1059
+ + PK+FLL +S S + + + ++ KPLR S+L +
Sbjct: 276 RNNDKP--------DSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRA 327
Query: 1060 PESSKKLQQKRK---KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRA 1116
K+ + +LG LL KQI+VVDDN+VN +VA GALKK+GA VTC D G+
Sbjct: 328 LGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKK 387
Query: 1117 AVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH 1176
A+ L PPHNFDACFMD+QMPEMDGF+AT +IR +E ++NE+I GE+ E ++ W
Sbjct: 388 AITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPEC-ASIQRWR 446
Query: 1177 VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
PILAMTADVIQA++E+C+K MD YVSKPFE EQLY+ VARFF
Sbjct: 447 TPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFF 490
>gi|28916434|gb|AAO59548.1| histidine kinase [Oryza sativa Indica Group]
Length = 488
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/516 (46%), Positives = 330/516 (63%), Gaps = 49/516 (9%)
Query: 719 LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778
LA+YVSD+VP+++IGDPGR RQIITNLVGNSIKFT+ +GHI+++VH+ ++V S ++V+
Sbjct: 1 LAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTE-RGHIYLTVHVVEEVMSCLEVETG 59
Query: 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNT-NTMEQL------GRIKLL 831
+ + NTLSG+PV +R +SWE+ ++ + ++ E+ I L+
Sbjct: 60 I-------------QNTNTLSGYPVANRRRSWESIRLFNRELHSSEKSFAPIASDSISLV 106
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
++VEDTGVGIP EAQ R+FTPFMQ S +R +GGTGIGLSIS+CLV LM GEIGF S+P
Sbjct: 107 ISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKP 166
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
GSTF+FT D K SEF+G+ ALV+D + +RA+VT+YHLQRL
Sbjct: 167 HVGSTFTFTAVLMRAHCKGNDIKS-------SEFKGINALVVDHRPVRAKVTKYHLQRLG 219
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE---IGLVLHYMLKQQRRKG 1008
+ + + S L+ T+ LVLIDK+ W KE L+++ + +
Sbjct: 220 VKTELTAELNQFISKLNSGSLTA-----KLVLIDKETWLKESHCTPLLVNKLRNNDKP-- 272
Query: 1009 GLEISRNLPKIFLLATSISE-TDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQ 1067
+ PK+FLL +S S + + + ++ KPLR S+L + K+
Sbjct: 273 ------DSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVH 326
Query: 1068 QKRK---KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
+ +LG LL KQI+VVDDN+VN +VA GALKK+GA VTC D G+ A+ L PP
Sbjct: 327 CRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPP 386
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
HNFDACFMD+QMPEMDGF+AT +IR +E ++NE+I GE+ E ++ W PILAMTA
Sbjct: 387 HNFDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPEC-ASIQRWRTPILAMTA 445
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
DVIQA++E+C+K MD YVSKPFE EQLY+ VARFF
Sbjct: 446 DVIQATHEECLKSEMDGYVSKPFEGEQLYSEVARFF 481
>gi|168061325|ref|XP_001782640.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162665873|gb|EDQ52543.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1123
Score = 434 bits (1117), Expect = e-118, Method: Compositional matrix adjust.
Identities = 332/1042 (31%), Positives = 505/1042 (48%), Gaps = 138/1042 (13%)
Query: 269 LVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILV 328
LVVF+ +G ++ + +L R + CD +L+ + ++N L+
Sbjct: 115 LVVFIFVGWVLASIIGVVLYNSSLKSRNREFSLKCDNHKEILRSEVENNLNASFVALGLI 174
Query: 329 STFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKME 388
+ + V+ + +T RT F RP + Y +VL S+R +FE+++ I
Sbjct: 175 AGVPY------VNDSIWKNFTRRTLFLRPNVRTLVYCERVLASQRSEFERKYNATI---- 224
Query: 389 TEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGK 448
T++ + T PA DEYAPV+F E V + D S E +++AR +G
Sbjct: 225 ---VTILPNGTRWKRGPA---DEYAPVVFQTEDVD-LYMYDAGSSPILDEALVKARDTGL 277
Query: 449 GVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLH 508
L+PP + +G L + D + R A +GY+ D+ + +L
Sbjct: 278 FTLSPPSPRQSTFQMGAYLAYYGPGKDSRSFLSAAARKSACVGYVATVLDIVEVFGAVLS 337
Query: 509 Q-LASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDP-------------- 553
+ +A++ VV VY+ + P Y T L+ L DP
Sbjct: 338 RFIANEDMDVVAVYNVDPNTTPHVSYNCSTT----LKPCVLPLFDPANRSKEHSDVFVAW 393
Query: 554 ---SRKHEMHC--RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEM 608
S+ E+ C R K + + + + ++ L I + + R+ +E D M
Sbjct: 394 EVGSQNFELRCLPRSNMKLLAFRSVVAWPLLLAMVVLFCAIIVYLVLKRMLVIEKDVSLM 453
Query: 609 MELKAR-------AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQ 661
++ A+ AEAA+ AKS FLATVSHEIRTPMNGV+GM +LM TEL+A Q +Y +
Sbjct: 454 EKVNAKLTAATMAAEAAEKAKSSFLATVSHEIRTPMNGVIGMTNLLMGTELNAQQREYVK 513
Query: 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
A SGK L++LINDVLD +KIE+G++E E V + + D + S K + +E+
Sbjct: 514 IAQASGKALLALINDVLDLSKIEAGKMEVESVKLDIRNEFDEIFSFLDEKDSNNHLEMVA 573
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV------------ 769
+ D VP ++GDP R RQI+ NLV NS+KFT+ +G IF+ V + D
Sbjct: 574 LIHDAVPSCLMGDPTRIRQILFNLVSNSMKFTK-QGSIFICVRMLDSCHSDRLHPPPEVI 632
Query: 770 ----RSKVDV-----KDKVLEKS---------------------------LNSVQHKSDK 793
RSK+ +V+ KS ++ V +
Sbjct: 633 YDLSRSKLFFLGSVNNTQVVPKSPSGSDTTGMVGSDRDTICRGGSTRLSEMHLVAPRLSM 692
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
V LS V W+ WE + ++ T + + L+++VEDTG+ +PL R+F PF
Sbjct: 693 VPGPLSSREAVAAWRRWEPKRSVETTES----NPVTLVISVEDTGIDVPLHLHNRLFQPF 748
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
+QADSS+SR YGGTG+GLSI + L LM G++ S PG GS F TVT + P
Sbjct: 749 LQADSSSSREYGGTGVGLSICKKLAMLMKGDLTVSSNPGEGSVFELTVTLGRAPQ----P 804
Query: 914 KWQ----------QYVPDVSE-FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
K Q P SE RG R +++D +R E +L+RL + V +
Sbjct: 805 KCSNSSGCCTTPDQRPPLESEKLRGFRVILVDTHPVRQEAYASYLRRLGVVVEETEDLDG 864
Query: 963 ACSYLSDTCSTSVLPQLALVL--IDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
+ ++S + +VL +D+++ EIG ++ R + G E LP I
Sbjct: 865 TLELVRRKENSSSAQAIIVVLQGVDREL-TMEIG-------QRVRTEPGYE---TLPIIA 913
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK 1080
L T + DELK+ G + + KPLR + + + ++ K+ P+ LL
Sbjct: 914 LTCTPLP----DELKTAGYSSTIFKPLRHATVATILLQALGVRFQMSTKKVAPN-PKLLT 968
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL---TPPHNFDACFMDLQMP 1137
GK++LVVDDNMVNRRVA L ++GA V V+ G AV+ + P +D MD+QMP
Sbjct: 969 GKRLLVVDDNMVNRRVATSMLARYGATVVKVNGGMEAVNAVRNQKPDEAYDLVLMDIQMP 1028
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EMDG++AT QIR LE E EQ A E+S E+F H+PI+A+TADV+ ++E C
Sbjct: 1029 EMDGYEATRQIRKLEIENCEQCADSEASEELFKCFH-HHLPIVAVTADVMNGTHELCFDA 1087
Query: 1198 GMDDYVSKPFEDEQLYTAVARF 1219
GMDDY+SKP + +QLY+ + F
Sbjct: 1088 GMDDYISKPLDQKQLYSLLEHF 1109
>gi|222623641|gb|EEE57773.1| hypothetical protein OsJ_08314 [Oryza sativa Japonica Group]
Length = 891
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 245/531 (46%), Positives = 336/531 (63%), Gaps = 50/531 (9%)
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
+LA++V D VP+VVIGDP R+RQI+TNLVGN++KFT+ +GH+FV V LA++ SKV+ +
Sbjct: 373 QLAVFVCDDVPKVVIGDPWRYRQILTNLVGNAVKFTE-RGHVFVRVCLAEN--SKVEA-N 428
Query: 778 KVLEKSLNS----VQHKSDKVYNTLSGFPVVDRWKSWENFKML--DNTNTMEQL------ 825
+VL ++N V+ ++ +NTLSGF D +W+ FK+L D M++L
Sbjct: 429 QVLNGTMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSY 488
Query: 826 ----GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELM 881
+ L++++EDTGVGIPL AQ R+FTPFMQADSSTSR YGGTGIGLSIS+CL ELM
Sbjct: 489 QNDCDCVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 548
Query: 882 GGEIGFVSEPGTGSTFSFTVTFTEGERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRA 940
GG+I F S P GSTF+F+ ++ S D K + F+G++A+++D + +R
Sbjct: 549 GGQISFTSRPFVGSTFTFSAVLKRSCKDTSSDSKRSLSEALPTAFKGMKAILVDGRPVRG 608
Query: 941 EVTRYHLQRLEMAVHVANSMQLACSYLSDTCST-SVLPQLALVLIDKDVWDKEIGLVLHY 999
VTRYHL RL + V V N++ + L+ +L+++ I+ D+W E ++L
Sbjct: 609 AVTRYHLNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDILLLN 668
Query: 1000 MLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE- 1058
L + + G + LPK+ LL T SE D+D S ++ KP+R S + C Q+
Sbjct: 669 RLHELKNNGQVH---ELPKLVLLVT--SEADKDRYGS-AFDIVMYKPIRASTIASCLQQL 722
Query: 1059 ----DPESSKKLQQKRKKPS-LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDC 1113
PE +K Q R PS L LL GK IL+VDDN VN RVA ALKK+GA V CV+
Sbjct: 723 LKVVMPE--RKDNQNR--PSFLRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVES 778
Query: 1114 GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ-----IASGESSAEM 1168
G+ AV L PH FDACFMD+QMPEMDGF+AT QIR +E + NE+ + G + E
Sbjct: 779 GKDAVSLLQQPHCFDACFMDVQMPEMDGFEATRQIRQMEVKANEERKALDLMEGSTFVES 838
Query: 1169 FGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
H+P+LAMTADVIQA+ E+C+K GMD YVSKPF++EQLY AV+R
Sbjct: 839 -------HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 882
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/393 (54%), Positives = 265/393 (67%), Gaps = 31/393 (7%)
Query: 258 PRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVS 317
P + WR +VL+ +A + ++ W L+ + R +E L SMC+ERARMLQ+QF V+
Sbjct: 4 PEARSGWRNAAAAAWVLVAVACAAYMHWHLRRETMDRAEERLVSMCEERARMLQEQFGVT 63
Query: 318 MNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFE 377
+NHVHALAIL+STFH K PSA+DQ TF +YT RT+FERPL +GVAYA ++ H ERE FE
Sbjct: 64 VNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTSFERPLLNGVAYAQRIFHHEREMFE 123
Query: 378 KQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDR 437
Q GW +K M+ + AP QDEYAPVIFSQ+TVS++ IDMMSG+EDR
Sbjct: 124 NQQGWIMKTMKRQ--------------AAPPQDEYAPVIFSQDTVSYLARIDMMSGEEDR 169
Query: 438 ENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLG------ 491
ENILRARA+GK VLT PF+LL SNHLGVVLTFAVY L DA+ E+R+EAT G
Sbjct: 170 ENILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVEATAGCLVVVV 229
Query: 492 ---------YLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTD--T 540
YLG ++DV SLVE LL +LA Q IVVNVYD TNAS P+ MYGP D
Sbjct: 230 SSNQIPTNRYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQSPDGKV 289
Query: 541 GLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQ 600
L VS LDFGDP R HEM CR++QKPP+PW+AI +G VI +LVG+I AA +R +
Sbjct: 290 SLFHVSTLDFGDPFRAHEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDK 349
Query: 601 VENDYHEMMELKARAEAADVAKSQFLATVSHEI 633
V D +M ELK +AEAADVAKSQ V ++
Sbjct: 350 VSEDCRKMEELKTQAEAADVAKSQLAVFVCDDV 382
>gi|168028033|ref|XP_001766533.1| CKI3b AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
gi|162682178|gb|EDQ68598.1| CKI3b AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
Length = 1098
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 316/956 (33%), Positives = 472/956 (49%), Gaps = 122/956 (12%)
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETE-DQTLVQDC 398
VDQ T+ +TE+T F RP + Y L+VL +++ E ++ K M ++T+V +
Sbjct: 153 VDQDTWMAFTEQTVFLRPHVKSLVYCLRVLPQQKQAVEMKYN---KTMYINVNKTIVTNY 209
Query: 399 TPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLL 458
+EY PV +S + +D+ R ++ +AR SG L+ P+ +
Sbjct: 210 AK--------AEEYTPVFLQSANISMFM-LDIFGYPIFRSSLTQARDSGNFSLSAPY-VN 259
Query: 459 KSNHLGVVLTFAVYNTDLPQDA--TPEQRIEATLGYLGA-------SYDVPSLVEKLLHQ 509
+ L + +F Y ++ D T E R + +GY+ SY+V L
Sbjct: 260 EGKELWRMGSFLPYYGEVDPDTLKTVEARRASCVGYVVTVLSVQERSYEVYPLGRFKDPD 319
Query: 510 LASKQTIVVN-------VYDTTNASAP--INMYGPDVTDTGLLRVSNLDFGDPSRKHEMH 560
L T VN Y+ + + P + YG + GL V + F S E+
Sbjct: 320 LDISATAKVNPSLGLNAYYNCSVDANPCEVRFYGNHLKSKGLEAV-GVPFSYGSLDIELQ 378
Query: 561 CRFKQ-------KPPVPWTAINASIGV---VVITLLVGHIFHAAINRIAQVENDYHEMME 610
C + + + W + ++ V V + L++ + A I+ + + E + ++
Sbjct: 379 CWYNHNIRLHVLREMIAWPLLMLAMVVFCTVAVYLVLKKMSAAEID-VDKREKIHAQLRA 437
Query: 611 LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDL 670
K +AEAAD AKS FLATVSHEIRTPMNGV+GM +LM T+L QL+Y + A SG L
Sbjct: 438 AKLKAEAADTAKSSFLATVSHEIRTPMNGVIGMTNLLMGTDLSPQQLEYVKIAQASGNAL 497
Query: 671 ISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV 730
++LI+DVLD +KIE+GR+E E VPF + + LDN+LSLF K QK +E++ V D VP+
Sbjct: 498 VALISDVLDLSKIEAGRMEIETVPFDIREELDNILSLFEDKVYQKKLEISALVHDTVPQW 557
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD------------------DVRSK 772
+ GDPGR RQ++ NLVGN+IKFT+ G+IF+ V L D D R +
Sbjct: 558 LYGDPGRLRQVLINLVGNAIKFTK-HGNIFLCVRLVDPQFFATVSSSNEQFLDLIDTRHR 616
Query: 773 ----VDVKDKVLEKSLNSVQHKSDKVYNT----------------LSGFPVVDRWKSWEN 812
+ D SL V ++ LS V W++W+
Sbjct: 617 HNPETESADGSHNTSLQGVMAVRSNLFRARHPKMAPPRLSMKPGPLSTSACVAEWRNWKP 676
Query: 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
L + + ++++ED+G+GIP Q R+F PF+QADSSTSR YGGTGIGLS
Sbjct: 677 SGSL-------EFDEVACVISIEDSGIGIPKFMQSRLFEPFVQADSSTSREYGGTGIGLS 729
Query: 873 ISRCLVELMGGEIGFVSEPGTGSTFSFTVTF-TEGERNSLDP---KWQQYVPDVSE--FR 926
I + LV L G+I SEPG GS F F++ T G+R L ++ D+ + R
Sbjct: 730 ICQKLVRLTRGDITVESEPGEGSVFKFSLVLPTSGQRGDLRKLAFTMKRTPSDLEDERIR 789
Query: 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDK 986
G+R L++D +R EV +L+R+ + A +A L+ P V++D
Sbjct: 790 GIRVLLVDANPVRQEVAATYLRRVGALIEYAEDGSIALELLTRDEG----PPFQAVIVDL 845
Query: 987 DVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD--RDELKSDGIVTLLT 1044
D + L LK+ + KI +LA SI + EL+ G ++
Sbjct: 846 QGMDHMTAIQLVQRLKESV----------VNKIPVLALSIPPESELQSELQKAGYQHIVH 895
Query: 1045 KPLRLSVLI-GCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKK 1103
KPLR + LI G Q + RK+ + +L GK++LVVDDNMVNRRVA L++
Sbjct: 896 KPLRCNALISGLLQT--LGIEVTNPSRKQNANAEMLAGKRLLVVDDNMVNRRVASSILQR 953
Query: 1104 HGAIVTCVDCGRAAVD---KLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160
+GA V V+ G A++ K FD MD+QMPEMDG++AT IR E Q
Sbjct: 954 NGATVVTVNGGIQAINIVKKQDADKQFDMILMDIQMPEMDGYEATRLIREWEVGKCHQCQ 1013
Query: 1161 SGES---SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLY 1213
+ E + +PI+A+TADV++ ++E C GMDDY+ K F +LY
Sbjct: 1014 ALERIKYDYQELKECPHHRIPIVAVTADVMKGTHEMCFSAGMDDYIPK-FCASRLY 1068
>gi|168005127|ref|XP_001755262.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
gi|162693390|gb|EDQ79742.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
Length = 1218
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 327/1045 (31%), Positives = 497/1045 (47%), Gaps = 131/1045 (12%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W M+IL + + I V + + K + +R+E + C+ R + + + + ++
Sbjct: 162 WWMRILCILCACTLVIVVGVV-VYKNGLSNKRQE-IQLKCENRKEVFKSEVDNNLGASFV 219
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
+ LV++ VD +T+ +T++T F RP +AY L+VL +R+ EK++
Sbjct: 220 ILGLVTSVPD------VDPQTWLAFTDQTLFLRPHVRSLAYCLRVLPEQRQAVEKKYNAT 273
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
+ + + P EYAPVI VS + +D + +I++A
Sbjct: 274 MYTYQNRIKL-----------PRKPDVEYAPVILESAGVSSYM-MDTFGYPILKSSIIQA 321
Query: 444 RASGKGVLTPPFKLLKSNHLGVVL-TFAVYNT-DLPQDATPEQR----------IEATLG 491
R +G L+ P+ +G L + ++ L +A R +E G
Sbjct: 322 RDTGSFSLSAPYLQSGLWRMGSFLPNYGDFDPLTLKNEAVRRARCVGYVATVLNVEEVFG 381
Query: 492 ------YLGASYDVPSLVE----KLLHQLASKQTIVVNVYDTTNASAPIN-----MYGPD 536
++ S++V +L L +K +++ N SA N YG +
Sbjct: 382 SVVSSHFMTCSHEVHNLDRFRDADLYISAIAKVDSALDLNSYYNCSANTNPCEVRFYG-N 440
Query: 537 VTDTGLLRVSNLDFGDPSRKHEMHCRFKQ-------KPPVPWTAINASIGV--VVITLLV 587
T + + ++ F ++ + C + + + W + ++ V V LV
Sbjct: 441 RTRSKSVEAVSVPFTYGTQYIVLECWYNYNIRLHVLREMIAWPLLMLAVVVFCTVAVYLV 500
Query: 588 GHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
AA Q E + ++ K +AEAAD AKS FLATVSHEIRTPMNGV+GM +L
Sbjct: 501 LKRMSAAEKDAYQREKIHAQLRAAKVKAEAADTAKSSFLATVSHEIRTPMNGVIGMTNLL 560
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
M T+L QL+Y + A SG L++LI+DVLD +KIE+GR+E E VPF + + LDN+LSL
Sbjct: 561 MGTDLTPQQLEYVKIAQASGNALVALISDVLDLSKIEAGRMEIETVPFDIREELDNILSL 620
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
F K +QK +E++ V D VP + GDPGR RQ++ NLVGN+IKFT+ +G IF+ V L D
Sbjct: 621 FEEKVHQKKLEISALVHDSVPRWLYGDPGRLRQVLINLVGNAIKFTK-QGSIFLCVRLVD 679
Query: 768 -------------------DVRSK----VDVKDKVLEKSLNSV------------QHKSD 792
D R + ++ D + SL V H +
Sbjct: 680 PYFYETVSPPSSQQFLDLVDTRRRRIPEAELPDGNHDASLKGVIAVRSNLFRPRHPHMAP 739
Query: 793 KVYNTLSG----FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
+ SG V W++W+ LD + ++++ED+G+GIP Q R
Sbjct: 740 PRLSMKSGPSSTSACVAEWRNWKPIGGLD-------FDEVICVISIEDSGIGIPKFMQNR 792
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF-TEGE 907
+F PF+QADSSTSR YGGTGIGLSI + LV GG+I SEPG GS F F++ T G+
Sbjct: 793 LFEPFVQADSSTSREYGGTGIGLSICQKLVRFTGGDIVVESEPGEGSVFKFSLVLPTSGQ 852
Query: 908 RNSLDP-----KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
R L K RG+R L++D +R EV +L+R+ + A+ +
Sbjct: 853 RGDLQKLAFAMKRSPSGLGDERIRGIRVLLVDANPVRQEVAATYLRRVGALIEYADDVDT 912
Query: 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
A L+ P V++D D + + L LK K ++ ++P L
Sbjct: 913 ALELLTRENG----PPFQAVIVDLQGMDHKSSIQLVQRLKVSTAKTFPVLALSIPPDIAL 968
Query: 1023 ATSISETDRDELKSDGIVTLLTKPLRLSVLI-GCFQEDPESSKKLQQKRKKPSLGHLLKG 1081
T EL G ++ KPLR + LI G Q L RK+ + +L G
Sbjct: 969 QT--------ELHEAGYQHIVHKPLRCTTLISGLLQTLGMQVTNL--SRKQNANAEMLTG 1018
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRA---AVDKLTPPHNFDACFMDLQMPE 1138
K +LVVDDNMVN VA L+++GA V V+ G AV + FD MD+QMPE
Sbjct: 1019 KCLLVVDDNMVNSTVASSMLQRYGATVVTVNGGNQAIIAVKQQESDKQFDMILMDIQMPE 1078
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFG---NVGLWHVPILAMTADVIQASNEQCM 1195
MDG++AT IR E + EQ + E +G +PI+A+TADV++ ++E C
Sbjct: 1079 MDGYEATRLIRKWEVDKCEQCRALEKIEYDYGEPKECPHHRIPIVAVTADVMKGTHEMCF 1138
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARFF 1220
GMDDY+ KP + QL + RF
Sbjct: 1139 SAGMDDYIPKPLDQRQLQLLLERFL 1163
>gi|168047701|ref|XP_001776308.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162672403|gb|EDQ58941.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1148
Score = 395 bits (1014), Expect = e-106, Method: Compositional matrix adjust.
Identities = 315/1011 (31%), Positives = 495/1011 (48%), Gaps = 107/1011 (10%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
W ++L F+ LG ++ + LL + ++ C R +L+ + ++N A
Sbjct: 85 WTARVL--FIALGWMLACGVGALLWKDALRSMEQEFRLKCVNRKEVLKSEVENNLNASFA 142
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
+ L ++ + ++ + + Y RT F RP + + Y +V+ SER FE++
Sbjct: 143 IVGLTASLPN------LNNEIWMTYARRTLFLRPYVTRLLYVERVIASERAAFERKWNSS 196
Query: 384 IKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRA 443
I + ++ + + P+N EY+P++F E H + +D + R I A
Sbjct: 197 ILYVTPQNTVIRR---PDN------DTEYSPIVFETED-EHYLFVDSGAYPRYRSAIDAA 246
Query: 444 RASGKGVLTPPFKLLKSN-HLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSL 502
R +G L+P K++ +G L + DL ++ +R +A GY+G +V L
Sbjct: 247 RDTGLFTLSPVTPRAKNSWQMGAYLAYYGRGRDLTNFSSVAERRQACKGYVGTVMNVTEL 306
Query: 503 VEKLLHQLASKQTI----------VVNVYDTTNASAP-----INMYGPDVTDTGLLRVSN 547
++L Q + + +Y N SA + ++ P + +
Sbjct: 307 FHRVLFQFTDDVDMDVVAVFVVNPMSGLYSYYNCSASASDCTVVLFDPARRAHEVSKAVA 366
Query: 548 L-DFGDPSRKHEMHCRFKQ-------KPPVPWTAINASIGVV--VITLLVGHIFHAAINR 597
L D+G ++ + C KQ + + W + + + + +I LV A
Sbjct: 367 LWDYG--TQSFSVRCFPKQNLTLLALRAIIAWPLLMSLVVIFCFIIVCLVLKRMQAIEKD 424
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+A +E ++ K AEAAD AKS FLATVSHEIRTPMNGV+GM +LM T+L QL
Sbjct: 425 VAVMEKMDEDLKVAKVAAEAADKAKSNFLATVSHEIRTPMNGVIGMTNLLMGTDLTDQQL 484
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
+Y + A SG LI+LINDVLD +KIE+GR+E E VPF++ +D V LF QK +
Sbjct: 485 EYVKIAQASGNALIALINDVLDLSKIEAGRMELEAVPFNIRKEVDCVFHLFDETVQQKKL 544
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS------ 771
E+++ V + VP VIGDPGRFRQI+ NL+GN++KFT++ G I V V + D +
Sbjct: 545 EMSMLVHNTVPTCVIGDPGRFRQILGNLIGNALKFTKE-GSILVCVRVMDPNQGSSSDFT 603
Query: 772 --KVD------------VKDKVLEKSLNSVQHKSDKVYNTLSGFP--------VVDRWKS 809
VD + + + E L ++ + LS P V+ W+
Sbjct: 604 AINVDQNSPDTHSSQGLITETLSEVELEGLRLRGGSTAPRLSIQPGTEFNSREAVESWRK 663
Query: 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGI 869
W N K + + ++ +VEDTG+GIP + R+F PF QA+SSTSR +GGTGI
Sbjct: 664 W-NLKT--SALNCKPPSHFTIIASVEDTGIGIPQHLEKRLFQPFSQANSSTSREHGGTGI 720
Query: 870 GLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLR 929
GLSI LV+LM GEI S G GS F F + + P ++ G+
Sbjct: 721 GLSICEKLVKLMNGEITVTSNVGVGSVFEFFLPVKFHDALEGKPCCSKFPAGDKRLSGMH 780
Query: 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVW 989
+++D+ +R EVT +LQ L++ V + M+ L ++ L +L+D +
Sbjct: 781 VVLVDNNLVRQEVTANYLQCLDIYVDLVEDMESTLELLRIKGTS-----LQAILVDLE-- 833
Query: 990 DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRL 1049
GL L + + + LP + L+ ++ EL+ G+ ++ KPLR
Sbjct: 834 ----GLSLASIADLTSTVRNMPSFKALP-VLGLSLALPPLIEKELRDAGVSYMVKKPLRH 888
Query: 1050 SVLIGCFQEDPESSKKLQQKRK-KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIV 1108
S L E + KR K LL K+ILVVDDNMVNRRVA LKK+GAIV
Sbjct: 889 SSLACVLLEAMNLTPTPATKRAVKVDDSKLLSDKRILVVDDNMVNRRVATSMLKKYGAIV 948
Query: 1109 TCVDCGRAAVDKL---TPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESS 1165
+ V+ G AVD + D MD+QMPEMDG++AT +IR+ E E N I ++
Sbjct: 949 SSVNGGAEAVDAVKNRKEDEKLDLIVMDIQMPEMDGWEATRRIRNWEVE-NCFICRTKNI 1007
Query: 1166 AEMFGNVGLW----HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
+ W +PI+A+TADV++ ++ +C+ GMDDY++K + +Q+
Sbjct: 1008 S--------WCRHHRLPIVAVTADVLKGTHTECINSGMDDYLTKADQKKQI 1050
>gi|168041528|ref|XP_001773243.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
gi|162675438|gb|EDQ61933.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
Length = 1020
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 316/1022 (30%), Positives = 491/1022 (48%), Gaps = 121/1022 (11%)
Query: 268 ILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAIL 327
I V+ V+LG ++ + +L R++ C+ R +L+ Q ++N + L
Sbjct: 36 IRVLVVVLGWIVACGVGAVLWRAALKFREQEFDLKCENRKEVLKSQVENNLNASFVIVGL 95
Query: 328 VSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKM 387
+++ V + + RT F RP + Y +V + R FE++ I +
Sbjct: 96 LASVPE------VSADMWVNFATRTLFLRPTVKRLVYVERVPAANRAAFERKWNTSILYI 149
Query: 388 ETEDQTLVQDCTPENLDPAPVQDEYAPVIF-SQETVSHIVSIDMMSGKEDRENILRARAS 446
+ T V+ EY+PV+F + + V + +D + R I AR +
Sbjct: 150 NHSNVTEVRSAN---------DTEYSPVVFETDDKVPKYLFVDAGAYPAYRSAIDAARDT 200
Query: 447 GKGVLTPPFKLLKSN-HLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEK 505
G L+P +G L + D ++ E R +A GY+G +V +
Sbjct: 201 GLFTLSPVTPRRDGTWQMGAYLAYYGPGRDYTSFSSTEARRQACRGYVGIVMNVTDVFHG 260
Query: 506 LLHQLASKQTIV----VNV------YDTTNASAP-------INMYGPDVTDTGLLRVS-N 547
+L + + NV +D+ N SA + ++ P + + +
Sbjct: 261 VLSRFTDVDDMDVVAVFNVNSKLESFDSYNCSAAASSKSCAVPLFDPAGRASEFSKAAVT 320
Query: 548 LDFGDPSRKHEMHCRFKQKPPVPWTAINASIG----VVVITLLVGHIFHAAINRIAQVEN 603
++G ++ E+ C K+ + A+ A+I + ++ + I + + R+ +E
Sbjct: 321 WEYG--TQHFEVRCLPKRN--LKLLALRAAIAWPLLMSLVVIFFSIIVYLVLKRMQAIEE 376
Query: 604 DYHEMMEL-------KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
+ M ++ K AEAAD AKS FLATVSHEIRTPMNGV+GM +LM T L Q
Sbjct: 377 EVRLMEKMNEDLNVAKLAAEAADKAKSNFLATVSHEIRTPMNGVIGMTNLLMGTNLTTQQ 436
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
L+Y + SG LI+LINDVLD +KIE+GR+E E V + + +D V LF +A Q
Sbjct: 437 LEYVKVVQASGNTLIALINDVLDLSKIEAGRMELESVAYDIRKEVDGVFLLFDDRAQQNK 496
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH------------ 764
IEL++ V D VP ++GDPGRF QI+ N+V N++KFT++ G+I V V
Sbjct: 497 IELSMLVHDAVPNYIVGDPGRFHQILANVVSNALKFTRE-GNILVCVRAMRVSQGNKALF 555
Query: 765 --LADDVRSKV--DVK-DKVL-EKSLNSVQHKSDKVYNTLSGFP--------------VV 804
+ D S V DV+ +VL ++ + V K+Y P +
Sbjct: 556 TAITIDQNSAVPGDVQPSQVLPDEPFSLVGSDGMKLYEDQDVAPRLSIQPGSESNRSEAL 615
Query: 805 DRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTY 864
D W+ WE +K L ++ + + L+V+VEDTG GIP + R+F PF QADS++SR +
Sbjct: 616 DLWRKWE-WKNLSGSHC-KPPNQFILIVSVEDTGPGIPCHMEPRLFQPFSQADSNSSREH 673
Query: 865 GGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV--TFTEGERNSLDPKWQQYVPDV 922
GGTGIGL IS+ L++LM G I +SEPG GS F FT+ +F + S K Q + D
Sbjct: 674 GGTGIGLFISQKLIKLMNGTIRVMSEPGKGSVFEFTLPASFADTAGGS---KPQLPMED- 729
Query: 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALV 982
+GL ++D + E+T L+ M V +A+ +Q L T P L V
Sbjct: 730 KRLKGLHVALVDTDLVHREITASFLRYSGMHVELADDVQSTMEILQRTGG----PTLQAV 785
Query: 983 LIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTL 1042
++D GL ++ R + L + L + +S ELK G+ +
Sbjct: 786 MVDIK------GLPSAPAVELARSIRSTPSLKALSVLVLTSNPVSPPGEKELKDAGVSFI 839
Query: 1043 LTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALK 1102
++K LRLS E + K+K LL GK++LVVDDNMVN+RVA LK
Sbjct: 840 ISKSLRLSTGSSVLLEAMGLKPQAPVKKKANDNVKLLLGKRLLVVDDNMVNQRVATSMLK 899
Query: 1103 KHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162
++GAIV+ V+ G DK D MD+QM EMDG+QAT IR+ E E +
Sbjct: 900 RYGAIVSSVNSG--IEDK-----KLDLVLMDIQMSEMDGWQATRHIRNWEVENCDTCCK- 951
Query: 1163 ESSAEMFGNVGLW----HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
NV W +PI+A+TAD ++ ++ +C GMDDY++KP + +QL + + R
Sbjct: 952 -------SNVN-WCRHNRLPIVAVTADAMKGTHAECFSSGMDDYITKPLDQKQLQSLLER 1003
Query: 1219 FF 1220
F
Sbjct: 1004 FI 1005
>gi|168024653|ref|XP_001764850.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683886|gb|EDQ70292.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1114
Score = 375 bits (962), Expect = e-100, Method: Compositional matrix adjust.
Identities = 309/964 (32%), Positives = 469/964 (48%), Gaps = 124/964 (12%)
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCT 399
+D + ++T +T F RP + Y +VL+ +R FEK+ I +
Sbjct: 163 LDDTVWRKFTHQTLFLRPNVKRLLYMERVLNKDRAAFEKKWNGTIGYL-----------V 211
Query: 400 PENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLK 459
+ P EY+P+I + + H + +D I AR +G L
Sbjct: 212 GNVVHPRGNDSEYSPIIHEKSDLQHAL-VDPAHYPVFASAIHAARDTGLFTLWLATGDPS 270
Query: 460 SNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQ---------- 509
S +G L + + AT E+R A LGY+G +V + +LL +
Sbjct: 271 SWQMGAYLAYYGPGKEGSSFATIEERRAACLGYVGTVLNVSEIFARLLSRFIDDVDMDVV 330
Query: 510 ---LASKQTIVVNVYDTTNASAP--INMYGPDVTDTGLLRVSNLDFGDPSRKHEMHC--R 562
L Q + Y+ +N + P + +Y P V+++++ + ++ C +
Sbjct: 331 FVYLVDPQATLF--YNCSNTAVPCVVALYDPARRSRDGKPVASVNWDYGTLMFQLRCLPK 388
Query: 563 FKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYH-------EMMELKARA 615
K I + + V+ L I + R+ +E D ++ K A
Sbjct: 389 HNSKLIALRNIIAWPLLMSVVVLFFSIIVFLVLRRMQAIEKDVSIIEKMNVDLKAAKVAA 448
Query: 616 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIN 675
EAAD AKS FLATVSHEIRTPMNGV+GM +LM T+L + QLDY + A +SG LI+LIN
Sbjct: 449 EAADKAKSSFLATVSHEIRTPMNGVIGMTNLLMGTDLSSQQLDYVKVAQSSGNALIALIN 508
Query: 676 DVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDP 735
DVLD +KIE+G++E E V F+L +D+V +LF K QK +E+ + V + VP V GDP
Sbjct: 509 DVLDLSKIEAGKMELESVSFNLRKEVDSVFTLFDEKLQQKKLEVFMLVHEAVPTCVTGDP 568
Query: 736 GRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD----------KVLEKSLN 785
GRFRQI+ NLV N++KFT++ G I VSV + D S+ D +D +K+
Sbjct: 569 GRFRQILVNLVSNALKFTKE-GSILVSVRVMDP-HSEADDQDYPSSDSVYILDPAQKASG 626
Query: 786 SVQHKS-------DKVYN---------------------TLSGFP--------VVDRWKS 809
S+Q K YN LS P V W++
Sbjct: 627 SIQMSQMVPNASPKKSYNYPQIEGVKRDESDLARGNTAPRLSMHPGDEANTREAVAAWRA 686
Query: 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGI 869
W+ + N + ++V+VEDTG+GIPL Q R+F PF QADSSTSR YGGTGI
Sbjct: 687 WK-LTTISGRNACKPPKNFTVIVSVEDTGIGIPLHLQNRLFQPFSQADSSTSREYGGTGI 745
Query: 870 GLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT--EGERNSLDPKWQQYVPDVSEFRG 927
GLSI + LV+LM G + S+PG GS F FT+ + E + L + D ++ RG
Sbjct: 746 GLSICQKLVKLMNGALTVKSKPGEGSVFEFTLPLSVPEESGDKLSCCVKASPEDKTKLRG 805
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
+ ++D +R EVT +L+ L + + S+ D +T L + ++
Sbjct: 806 MHVALVDSNIVRQEVTASYLRCLGICID---------SFTEDVPTT-------LQFLQRE 849
Query: 988 VWDKEIGLVLHYMLKQQRRKGGLEIS---RNLPKI-----FLLATSISETDRDELKSDGI 1039
K +V+ LK + LE++ RN+P + L+ ++ T ELK GI
Sbjct: 850 EKTKVHAVVVD--LKGLPHEDILELTRSIRNIPSLKALPMLALSMGLTPTGEIELKETGI 907
Query: 1040 VTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
++ KPLR + L E + K+ + +L G+++LVVDDNMVNRRVA
Sbjct: 908 SHIIRKPLRYTTLAAVLLETIGIPARAPMKKINLN-AIMLSGRRLLVVDDNMVNRRVASS 966
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPP---HNFDACFMDLQMPEMDGFQATWQIRHLENEIN 1156
L ++GAIV+ V+ G AV+ + FD MD+QMPEMDG++AT +IR E +
Sbjct: 967 MLTRYGAIVSTVNGGVEAVNAVKNQKIGKEFDLVLMDIQMPEMDGWEATRRIRRWELDCC 1026
Query: 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
+ ++ E F +P++A+TADV+ + C GMDDY++KP + +QL+ +
Sbjct: 1027 KLCL---NTCEDF--CPHHRLPVVAVTADVVVQTRSMCFAAGMDDYITKPLDQKQLHALL 1081
Query: 1217 ARFF 1220
RF
Sbjct: 1082 DRFL 1085
>gi|194706202|gb|ACF87185.1| unknown [Zea mays]
Length = 438
Score = 371 bits (952), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 210/444 (47%), Positives = 279/444 (62%), Gaps = 41/444 (9%)
Query: 796 NTLSGFPVVDRWKSWENFKMLD---NTNTME----QLGRIKLLVTVEDTGVGIPLEAQVR 848
NTLSG+PV +R +SWENF++ N++ M I L+++VEDTG GIP +AQ R
Sbjct: 14 NTLSGYPVANRKRSWENFRLFSRELNSSEMPFAPIASDSISLMISVEDTGAGIPFDAQSR 73
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
+FTPFMQ S +R +GGTGIGLSIS+CLV LM GEIGF S+P GSTF+FT T
Sbjct: 74 VFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFSSKPQVGSTFTFTAVLTRVHS 133
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
+ + K SEF+ + ALV+D + +RA+VT+YHLQRL + + + Y+S
Sbjct: 134 SRNENK-------SSEFKEINALVVDHRPVRAKVTKYHLQRLGVQTELTTDLD---QYIS 183
Query: 969 -DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+ C + + LVLIDK+ W KE + ++ + R K + + K+FLL
Sbjct: 184 KNNCGSQIA---KLVLIDKETWLKE-SHSMPLLVTKLRNKDQPDST----KLFLL----- 230
Query: 1028 ETDRDELKSDGIV------TLLTKPLRLSVLIGCFQEDPESSKKLQQKRK---KPSLGHL 1078
E + +KS+ + ++ KPLR S+L Q KL + +LG L
Sbjct: 231 ENPKSSVKSNSHIFREYNLNVIMKPLRASMLQVSLQRALGGIDKLHCRNGVVGNSTLGSL 290
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L K+I+VVDDN+VN +VA GALKK+GA VTC D G+ A+ L PPHNFDACFMD+QMPE
Sbjct: 291 LHKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFMDIQMPE 350
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDGF+AT +IR +E ++NEQI GE+ E G V W PILAMTADVIQA++EQC+K
Sbjct: 351 MDGFEATKRIRVMERDLNEQIERGEAPPECVG-VRQWRTPILAMTADVIQATHEQCLKSE 409
Query: 1199 MDDYVSKPFEDEQLYTAVARFFMS 1222
MD YVSKPFE EQLY VARFF++
Sbjct: 410 MDGYVSKPFEGEQLYREVARFFLN 433
>gi|115488474|ref|NP_001066724.1| Os12g0454800 [Oryza sativa Japonica Group]
gi|113649231|dbj|BAF29743.1| Os12g0454800, partial [Oryza sativa Japonica Group]
Length = 959
Score = 369 bits (946), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 191/361 (52%), Positives = 243/361 (67%), Gaps = 19/361 (5%)
Query: 260 SAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMN 319
SA W +L VF S+W+ ++ + R TLA MCDERAR+LQDQ VSMN
Sbjct: 7 SACHWMALLLWVFSC--SLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKVSMN 64
Query: 320 HVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQ 379
H+ ALAILVSTFHH K PSA+DQ TF Y ERTAFERPLTSG+AYA +V HSERE FE+Q
Sbjct: 65 HLQALAILVSTFHHSKSPSAIDQTTFARYVERTAFERPLTSGLAYAARVTHSERELFERQ 124
Query: 380 HGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDREN 439
W I+ M + P +EYAPVIF+Q+ H+VSIDM+SG EDR N
Sbjct: 125 QAWSIRAMNFSSKR-------------PRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGN 171
Query: 440 ILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDV 499
+LRAR SGK VLT PF+LL + +GVVLT+AVY ++LP +AT RI++++GYLG +D+
Sbjct: 172 LLRARESGKVVLTAPFQLL-NKRIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDI 230
Query: 500 PSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYG-PDVTDTGLLRVSNLDFGDPSRKHE 558
V+KLL +LA K+ + VN+YDTT S I MYG + + +G+ VS LDFGDP RKHE
Sbjct: 231 EGHVDKLLEKLAGKEPMTVNIYDTTGESM-IRMYGSSNESASGMCHVSTLDFGDPLRKHE 289
Query: 559 MHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEM-MELKARAEA 617
MHCRF Q PP PW A+ +S G +VI+LLVG+IFH IA+VE+ Y M++ A+ E
Sbjct: 290 MHCRFTQGPPWPWLAVASSYGTLVISLLVGYIFHFTDKWIAKVEDGYKATDMQMPAKDEF 349
Query: 618 A 618
A
Sbjct: 350 A 350
>gi|45861625|gb|AAS78641.1| putative cytokinin receptor [Oryza sativa]
gi|77555555|gb|ABA98351.1| CHASE domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|110331745|dbj|BAE97710.1| receptor-like serine/threonin kinase [Oryza sativa Japonica Group]
gi|125579248|gb|EAZ20394.1| hypothetical protein OsJ_36000 [Oryza sativa Japonica Group]
Length = 948
Score = 368 bits (945), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/352 (53%), Positives = 241/352 (68%), Gaps = 17/352 (4%)
Query: 269 LVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILV 328
L+++V S+W+ ++ + R TLA MCDERAR+LQDQ VSMNH+ ALAILV
Sbjct: 3 LLLWVFSCSLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKVSMNHLQALAILV 62
Query: 329 STFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKME 388
STFHH K PSA+DQ TF Y ERTAFERPLTSG+AYA +V HSERE FE+Q W I+ M
Sbjct: 63 STFHHSKSPSAIDQTTFARYVERTAFERPLTSGLAYAARVTHSERELFERQQAWSIRAMN 122
Query: 389 TEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGK 448
+ P +EYAPVIF+Q+ H+VSIDM+SG EDR N+LRAR SGK
Sbjct: 123 FSSKR-------------PRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGNLLRARESGK 169
Query: 449 GVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLH 508
VLT PF+LL + +GVVLT+AVY ++LP +AT RI++++GYLG +D+ V+KLL
Sbjct: 170 VVLTAPFQLL-NKRIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLE 228
Query: 509 QLASKQTIVVNVYDTTNASAPINMYG-PDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKP 567
+LA K+ + VN+YDTT S I MYG + + +G+ VS LDFGDP RKHEMHCRF Q P
Sbjct: 229 KLAGKEPMTVNIYDTTGESM-IRMYGSSNESASGMCHVSTLDFGDPLRKHEMHCRFTQGP 287
Query: 568 PVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEM-MELKARAEAA 618
P PW A+ +S G +VI+LLVG+IFH IA+VE+ Y M++ A+ E A
Sbjct: 288 PWPWLAVASSYGTLVISLLVGYIFHFTDKWIAKVEDGYKATDMQMPAKDEFA 339
>gi|125536525|gb|EAY83013.1| hypothetical protein OsI_38233 [Oryza sativa Indica Group]
Length = 1019
Score = 367 bits (943), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 187/352 (53%), Positives = 241/352 (68%), Gaps = 17/352 (4%)
Query: 269 LVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILV 328
L+++V S+W+ ++ + R TLA MCDERAR+LQDQ VSMNH+ ALAILV
Sbjct: 3 LLLWVFSCSLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKVSMNHLQALAILV 62
Query: 329 STFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKME 388
STFHH K PSA+DQ TF Y ERTAFERPLTSG+AYA +V HSERE FE+Q W I+ M
Sbjct: 63 STFHHSKSPSAIDQTTFARYMERTAFERPLTSGLAYAARVTHSERELFERQQAWSIRAMN 122
Query: 389 TEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGK 448
+ P +EYAPVIF+Q+ H+VSIDM+SG EDR N+LRAR SGK
Sbjct: 123 FSSKR-------------PRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGNLLRARESGK 169
Query: 449 GVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLH 508
VLT PF+LL + +GVVLT+AVY ++LP +AT RI++++GYLG +D+ V+KLL
Sbjct: 170 VVLTAPFQLL-NKRIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLE 228
Query: 509 QLASKQTIVVNVYDTTNASAPINMYG-PDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKP 567
+LA K+ + VN+YDTT S I MYG + + +G+ VS LDFGDP RKHEMHCRF Q P
Sbjct: 229 KLAGKEPMTVNIYDTTGESM-IRMYGSSNESASGMCHVSTLDFGDPLRKHEMHCRFTQGP 287
Query: 568 PVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEM-MELKARAEAA 618
P PW A+ +S G +VI+LLVG+IFH IA+VE+ Y M++ A+ E A
Sbjct: 288 PWPWLAVASSYGTLVISLLVGYIFHFTDKWIAKVEDGYKATDMQMPAKDEFA 339
>gi|226875177|gb|ACO88936.1| cytokinin histidine-kinase receptor 1 [Vitis vinifera]
Length = 235
Score = 364 bits (935), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 181/235 (77%), Positives = 201/235 (85%)
Query: 640 VLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699
VLGML+MLMD+ LDA Q DYA+TAH SGKDLISLIN+VLDQAKIESGRLE E VPF L
Sbjct: 1 VLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEAVPFDLRA 60
Query: 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHI 759
LDNVLSLFS K+++KGIELA+Y+SD+VPE VIGDPGRFRQIITNLVGNSIKFT DKGHI
Sbjct: 61 ALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHI 120
Query: 760 FVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNT 819
FVSVHLAD+V D++D+VL +SLN V S+ YNTLSGFPVV+RWKSWE FK L T
Sbjct: 121 FVSVHLADEVVGPPDLRDEVLRQSLNIVHDSSNNSYNTLSGFPVVNRWKSWEKFKKLSCT 180
Query: 820 NTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSIS 874
++ME+ IKLLVTVEDTGVGIP EAQ RIF PFMQADSSTSRTYGGTGIGLSIS
Sbjct: 181 DSMEETSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSIS 235
>gi|349587786|pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
gi|349587787|pdb|3T4J|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
gi|349587788|pdb|3T4K|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
gi|349587789|pdb|3T4K|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
gi|349587790|pdb|3T4L|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
gi|349587791|pdb|3T4L|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
gi|349587792|pdb|3T4O|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
gi|349587793|pdb|3T4O|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
gi|349587794|pdb|3T4Q|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
gi|349587795|pdb|3T4Q|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
gi|349587796|pdb|3T4S|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
gi|349587797|pdb|3T4S|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
gi|349587798|pdb|3T4T|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
gi|349587799|pdb|3T4T|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
Length = 270
Score = 358 bits (919), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 176/276 (63%), Positives = 214/276 (77%), Gaps = 15/276 (5%)
Query: 293 LRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERT 352
+RR+E L SMCD+RARMLQDQF+VS+NHVHALAILVSTFH+ K+PSA+DQ+TF EYT RT
Sbjct: 7 IRREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTART 66
Query: 353 AFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEY 412
AFERPL SGVAYA KV++ ERE FE+QH W IK M+ + P+PV+DEY
Sbjct: 67 AFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGE-------------PSPVRDEY 113
Query: 413 APVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVY 472
APVIFSQ++VS++ S+DMMSG+EDRENILRAR +GK VLT PF+LL+++HLGVVLTF VY
Sbjct: 114 APVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVY 173
Query: 473 NTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINM 532
+ LP++ T E+RI AT GYLG ++DV SLVE LL QLA Q IVV+VYD TNAS P+ M
Sbjct: 174 KSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVM 233
Query: 533 YG--PDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQK 566
YG + D L S LDFGDP RKH+M CR+ QK
Sbjct: 234 YGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQK 269
>gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
Length = 1069
Score = 335 bits (858), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 234/684 (34%), Positives = 343/684 (50%), Gaps = 129/684 (18%)
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
AA I + + E+ E K +AEAA AKS+F+A +SHEIRTPMNGV+GM ++L+DT L
Sbjct: 300 AAARDITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDTPL 359
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
Q +YA+T +SG+ L++++ND+LD +KIE+GRL E +PF +H ++ V+SL + +A
Sbjct: 360 TPEQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRA 419
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+ KG+EL ++ VP ++ GDP R RQ++TNL+GN+IKFT++ G + VSV L+ + +S
Sbjct: 420 HAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEE-GEVVVSVSLSKEEKSA 478
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
P +R G I+L
Sbjct: 479 -----------------------------PAGERG------------------GEIELRF 491
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
V+D+G+GI E Q +F F QAD+ST+R YGGTG+GL+ISR LVE+MGGEIG S P
Sbjct: 492 EVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVEMMGGEIGLKSSPK 551
Query: 893 TGSTFSFTVTFT---------------EGE-RNSLDPKWQQYVPDVSEFRGLRALVIDDK 936
GSTF F+ F EGE + + ++ GLR LV+DD
Sbjct: 552 EGSTFHFSARFVLPEEEEEKSPKTPPEEGEGGGARRTREEEERGRRESLAGLRVLVVDDN 611
Query: 937 SIRAEVTRYHLQRLEMAVHVANSMQLACSYL--SDTCSTSVLPQLALVLIDKDVWDKEIG 994
+ + L+ M Q A L S T S LV++D + + + G
Sbjct: 612 ATNRTILCRQLEAWRMEPKSVGGAQEAIRELEASGTFLASSSSGYDLVILDMQMPETD-G 670
Query: 995 LVLHYMLK------QQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPL 1047
L L +K +++R G R +L TS+ ++++K+ G V L KP+
Sbjct: 671 LELARRIKSRLQEEEEKRGGAFSALR-----LMLLTSMDPQTKEKIKASGTVEACLQKPV 725
Query: 1048 RLSVLIGC----FQEDPESSKKLQQKRKKPSLGHLLKGKQ-------ILVVDDNMVNRRV 1096
R S L FQ KK +++R P H + ++ IL+ +DN VN++V
Sbjct: 726 RQSQLYDAIATLFQ------KKKEEERPLPLPAHQKEEEKEGKERPLILLAEDNPVNQQV 779
Query: 1097 AEGALKKHGAIVTCVDCGRAAVDKL------------------TPPHNFDACFMDLQMPE 1138
A LKK G V G A+ KL +P + A MD+QMP+
Sbjct: 780 AASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGSPKKKYAAVLMDIQMPK 839
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG +AT +IR E E G + L PI+AM+A +Q E+ +K G
Sbjct: 840 MDGLEATRRIRSKEEE---------------GVLRLPRTPIIAMSAHAMQEDRERALKAG 884
Query: 1199 MDDYVSKPFEDEQLYTAVARFFMS 1222
MD Y+SKP + EQL A+ RF +
Sbjct: 885 MDHYISKPVKKEQLKEALERFVAA 908
>gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
Length = 1369
Score = 334 bits (857), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 233/684 (34%), Positives = 344/684 (50%), Gaps = 127/684 (18%)
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
A + I + + E+ E K +AEAA AKS+F+A +SHEIRTPMNGV+GM ++L+DT L
Sbjct: 604 AQVQDITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDTPL 663
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
Q +YA+T +SG+ L++++ND+LD +KIE+GRL E +PF +H ++ V+SL + +A
Sbjct: 664 TPEQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRA 723
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+ KG+EL ++ VP ++ GDP R RQ++TNL+GN+IKFT++ G + VS L+
Sbjct: 724 HAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEE-GEVVVSASLS------ 776
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
K +K + +G E+ G I+L
Sbjct: 777 -----------------KEEKKKSAPAG----------------------ERGGEIELRF 797
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
V+D+G+GI E Q +F F QAD+ST+R YGGTG+GL+ISR LVE+MGGEIG S P
Sbjct: 798 EVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVEMMGGEIGLKSSPK 857
Query: 893 TGSTFSFTVTFT---------------EGE-RNSLDPKWQQYVPDVSEFRGLRALVIDDK 936
GSTF F+ F EGE + + ++ GLR LV+DD
Sbjct: 858 EGSTFHFSARFVLPEEEEEKSPKTPPEEGEGGGARRTREEEERGRRESLAGLRVLVVDDN 917
Query: 937 SIRAEVTRYHLQRLEMAVHVANSMQLACSYL--SDTCSTSVLPQLALVLIDKDVWDKEIG 994
+ + L+ M Q A L S T S LV++D + + + G
Sbjct: 918 ATNRTILCRQLEAWRMEPKSVGGAQEAIRELEASGTFLASSSSGYDLVILDMQMPETD-G 976
Query: 995 LVLHYMLK------QQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPL 1047
L L +K +++R G R +L TS+ ++++K+ G V L KP+
Sbjct: 977 LELARRIKSRLQEEEEKRGGAFSALR-----LMLLTSMDPQTKEKIKASGTVEACLQKPV 1031
Query: 1048 RLSVLIGC----FQEDPESSKKLQQKRKKPSLGHLLKGKQ-------ILVVDDNMVNRRV 1096
R S L FQ KK +++R P H + ++ IL+ +DN VN++V
Sbjct: 1032 RQSQLYDAIATLFQ------KKKEEERPLPLPAHQKEEEKEGKERPLILLAEDNPVNQQV 1085
Query: 1097 AEGALKKHGAIVTCVDCGRAAVDKL------------------TPPHNFDACFMDLQMPE 1138
A LKK G V G A+ KL +P + A MD+QMP+
Sbjct: 1086 AASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGSPKKKYAAVLMDIQMPK 1145
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG +AT +IR E E G + L PI+AM+A +Q E+ +K G
Sbjct: 1146 MDGLEATRRIRSKEEE---------------GVLRLPRTPIIAMSAHAMQEDRERALKAG 1190
Query: 1199 MDDYVSKPFEDEQLYTAVARFFMS 1222
MD Y+SKP + EQL A+ RF +
Sbjct: 1191 MDHYISKPVKKEQLKEALERFVAA 1214
>gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 816
Score = 318 bits (814), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 221/613 (36%), Positives = 312/613 (50%), Gaps = 104/613 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
KA AE A+VAK +FLA +SHEIRTPMNGV+GM Q+L TEL Q +Y +S L+
Sbjct: 135 KAEAEQANVAKGEFLANMSHEIRTPMNGVIGMAQLLDGTELSVQQREYVSIILHSADTLM 194
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
LINDVLD +KIE+G+LE E +PF L D L + L +++A KG+ELA +V +P+ +
Sbjct: 195 RLINDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAAHKGLELAYHVPVEIPDAL 254
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R RQIITNLVGN+IKFT+ KG + V DVR K
Sbjct: 255 VGDPTRLRQIITNLVGNAIKFTE-KGEVVV------DVRLK------------------- 288
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+ T+T ++L V DTG+GI Q ++FT
Sbjct: 289 -------------------------ETTDT-----DVQLEFEVRDTGIGISKNQQEKVFT 318
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT--VTFTEGERN 909
F QAD+ST+R YGGTG+GL+I+ L E MGG+I SEPG GSTFSF + ER
Sbjct: 319 AFGQADASTTRRYGGTGLGLTIAAQLAEKMGGKIKLESEPGVGSTFSFAPILHLAREER- 377
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
K + D E RG L++DD +T+ L M +A++ A + L
Sbjct: 378 ----KVRTLSSD--ELRGQPVLLVDDNETNRRITQEILVNWGMVPTLASNGAEALAALDR 431
Query: 970 TCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
+ V P+LAL+ DV+ E+ G L ++ ++ E+++ +I +L+++
Sbjct: 432 AIAEGVPPRLALL----DVFMPEMDGFELARRIRTRQ-----ELAQT--RILMLSSAERT 480
Query: 1029 TDRDELKSDGIVTLLTKPLRLSVLIGCFQED-----PESSKKLQQKRKKPSLGHLLKGKQ 1083
+ GI LL KP++ S L+ E PE + +P + +
Sbjct: 481 DGEARMHELGISRLLMKPIKQSDLLNAVTEALGVGLPEPHIPIPSPFTRPG---EIPIRH 537
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+ +D +VN++V L K G V V+ G AV+ + +FD MD+ MP MDG
Sbjct: 538 VLLAEDGVVNQQVTVALLTKRGHPVEVVENGEEAVEAVQ-RGDFDVVLMDVHMPVMDGLA 596
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
A IR E N G H+PI+A+TA +A E+CM GMDDYV
Sbjct: 597 AARMIRERER-----------------NTG-GHIPIIALTASATKADRERCMAAGMDDYV 638
Query: 1204 SKPFEDEQLYTAV 1216
+KPF +LY AV
Sbjct: 639 TKPFRAAELYRAV 651
>gi|298529160|ref|ZP_07016563.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510596|gb|EFI34499.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1154
Score = 316 bits (809), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 221/642 (34%), Positives = 325/642 (50%), Gaps = 77/642 (11%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
Q+E E+ RA+AA AKS+FLA +SHEIRTPMNGV+GM +L++T+L+ Q Y
Sbjct: 395 QMERKTVELDAALTRADAASKAKSEFLANMSHEIRTPMNGVIGMTGLLLETDLNETQRRY 454
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
A+T +SG+ L++L+ND+LD +KIESG+LE E + F L D LDN S+ + KA +KG+E
Sbjct: 455 AETVRSSGQALLALLNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAEEKGLEF 514
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
VP+ +IGDPGR RQI+TNLVGN++KFT+ +G + V V + + + + DK
Sbjct: 515 ICSADPDVPDNLIGDPGRIRQILTNLVGNAVKFTE-RGEVVVRVSIQESGVRRQETGDK- 572
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
Q DK T D+ + E F ML +V DTG+
Sbjct: 573 -------SQETGDKSQET------GDKSQESEEFCMLR--------------FSVRDTGI 605
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GIP + +F F Q D+S +R +GGTG+GL+ISR L ELMGGE+G S G G+TF F
Sbjct: 606 GIPEDKIGLLFQSFSQVDASVTRKFGGTGLGLAISRQLAELMGGEVGVESIEGQGTTFWF 665
Query: 900 TVTFTEGERNSLDPKWQQYVPDVS-EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
TV + E +P +S + RGLRALV+DD + E+ + A
Sbjct: 666 TVPLSLAETCD-------QIPSMSADLRGLRALVVDDNATNREILLTRFLDWGLRPDEAK 718
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
A L + LA++ + D E ++ + R L+ R
Sbjct: 719 DGPTALGRLYTALAEDDPYHLAIIDMQMPGMDGE------FLGRTIRADQKLQDVR---- 768
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ-----EDPESSKKLQQKRKKP 1073
+ +++++ + D +K L KPLR L C ++P+ R++
Sbjct: 769 LVMMSSAGMQGDARRMKDIWFAAFLAKPLRHDELFDCLSLVMAGDEPQDLVTRHSAREEK 828
Query: 1074 SLGHLL----KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL-TPPHNFD 1128
S + + +IL+ +DN+ N++VA LK G V G A+ L T P +D
Sbjct: 829 SRSGKIDFSDRKARILLAEDNITNQQVALAMLKNFGLSADAVANGLEAIKALKTVP--YD 886
Query: 1129 ACFMDLQMPEMDGFQAT-----WQIRHLENEINEQIASGESS-------------AEMFG 1170
MD+QM EMDG AT +IR E E+ +Q ES +
Sbjct: 887 LVLMDVQMLEMDGLAATRRIRAAEIRGRELEVRDQRLKSESQNSSIPESLNPLIPQSLNS 946
Query: 1171 NVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
+ + +PI+A+TA +Q EQC++ GMDDY++KP E QL
Sbjct: 947 RIPEFRIPIIALTAHAMQGYREQCLEAGMDDYLTKPLEPVQL 988
>gi|406952533|gb|EKD82114.1| hypothetical protein ACD_39C01476G0002 [uncultured bacterium]
Length = 976
Score = 315 bits (807), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 227/650 (34%), Positives = 328/650 (50%), Gaps = 120/650 (18%)
Query: 596 NRIAQVENDYHEM-------MELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM 648
N +A++E E+ EL +AE A+VAKS+FLA +SHEIRTPMNG++GM +L+
Sbjct: 296 NMVAKLEAANEELKSVSMQAAELAHQAEQANVAKSEFLANMSHEIRTPMNGIIGMSSLLL 355
Query: 649 DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLF 708
+T L A Q YA +S ++L+SL+ND+LD +KIE+G+L E + F L L++ +
Sbjct: 356 ETTLTAEQKQYADVVRSSCENLLSLVNDILDFSKIEAGKLSLEHINFDLRTTLEDAFEML 415
Query: 709 SSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD 768
+ KA++K IELA V+ P ++ GDPGR RQII NLVGN+IKFT D+G + ++V
Sbjct: 416 AIKAHEKKIELACVVAPETPSLLHGDPGRLRQIILNLVGNAIKFT-DQGEVILNV----- 469
Query: 769 VRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRI 828
KVD +H+ D +
Sbjct: 470 ---KVDE------------EHEHD-----------------------------------V 479
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
L V+DTG+GI + R+FT FMQ D ST+R YGGTG+GL+ISR L ELMGG IG
Sbjct: 480 MLRFVVKDTGIGIAPDHLSRLFTAFMQVDGSTTRKYGGTGLGLAISRQLAELMGGNIGVT 539
Query: 889 SEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQ 948
SEPG GS F FT FT + D + +P +++ G+R L++DD ++
Sbjct: 540 SEPGVGSEFWFTAKFTRQD----DENVPESLP-MADITGIRILIVDDHAV---------N 585
Query: 949 RLEMAVHVANSM-QLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007
RL V+N + C Y + L L + + D + + L+ M R
Sbjct: 586 RL----LVSNLLTSWGCRYSEAADGKAALEMLEIAEAEGDPY--YVALLDMLMPTMDGRA 639
Query: 1008 GGLEISRNLPKI----FLLATSISET-DRDELKSDGIVTLLTKPLRLSVLIGCF------ 1056
+I N PK+ +L TS+ + D + + G LTKPLR S L C
Sbjct: 640 LCEKIKSN-PKLASTRLILLTSLGQRGDAEWIHKVGFAGYLTKPLRQSQLHDCLSMVVGM 698
Query: 1057 ---QEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDC 1113
Q +S+ + + R L + +IL+V+DN+ N+ VA LKK G
Sbjct: 699 TDVQNVSLTSELITRHR---VLEAHRRNVRILLVEDNITNQEVALITLKKLGYRADLATN 755
Query: 1114 GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVG 1173
G A+ +L HN+ MD QMPEMDGF+AT IR N NV
Sbjct: 756 GIEAL-RLLSEHNYSMVLMDCQMPEMDGFEATENIRAGRN-----------------NVL 797
Query: 1174 LWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
VPI+AMTA+ +Q E+C++ GM+DY++KP + +L + ++ SG
Sbjct: 798 NSAVPIIAMTANAMQGDRERCIEAGMNDYIAKPVQPAELLGKLNQWLHSG 847
>gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
Length = 1248
Score = 313 bits (803), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 214/619 (34%), Positives = 312/619 (50%), Gaps = 103/619 (16%)
Query: 612 KARAEAADVA--KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
KAR A + A KS+FLA +SHEIRTPMNG++GM +L+DTEL Q D+ QT +S
Sbjct: 588 KARDAALESARLKSEFLANMSHEIRTPMNGIIGMTGLLLDTELSPKQRDFTQTISSSADA 647
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+++IND+LD +KIE+G L E + F L V++ + L +++A + IELA V VP
Sbjct: 648 LLTIINDILDFSKIEAGMLAFEEIDFQLGTVVEGSVELLAARAASREIELASLVYHDVPT 707
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
+ GDPGR RQ++TNL+GN++KFT DKG
Sbjct: 708 NLRGDPGRLRQVLTNLIGNAVKFT-DKGE------------------------------- 735
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
VV R EN + T+T I+ VT DTG+GI EAQ R+
Sbjct: 736 -------------VVVRANCQENAE----THTT-----IRFSVT--DTGIGISSEAQERL 771
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
F PF+QAD ST+R +GGTG+GL+I + LV MGGEIG SE G GSTF FT F +
Sbjct: 772 FQPFVQADGSTTRRFGGTGLGLAICKQLVARMGGEIGVTSEAGKGSTFWFTARFEKQAGG 831
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
+ P ++ + +R + +DD + + L M A S + A S L
Sbjct: 832 GM------AAPRPAKLKDVRVITVDDNDTNRAILHHLLSNWGMREQQAASGKQALSILQA 885
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
+ LA++ + D GL L +K+ R +I +L + +
Sbjct: 886 EAGRGRMFDLAILDMQMPEMD---GLELARAMKKDPRFAS-------ARIVMLTSVDRQE 935
Query: 1030 DRDELKSDGIVTLLTKPLRLSVLIGCFQ-------EDPESSKKLQQKRKKPSL--GHLLK 1080
D + L+ G+ LTKP++ S L C E E L ++P+ ++
Sbjct: 936 DPEALRETGVDAYLTKPVKQSQLYDCLSLVMSQDVETREIKSGLVALSEQPASLPSEPIE 995
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+IL+ +DN VN++VA L+K G + V+ GR A+D L +D FMD QMPE+D
Sbjct: 996 KLRILIAEDNPVNQKVALYQLQKLGYMADVVENGRRALDALARSR-YDIVFMDCQMPELD 1054
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G++AT +R +E ++ H ++AMTA+ ++ E+C+ GMD
Sbjct: 1055 GYEATRDLRAIEGDVR-------------------HTWVIAMTANSLEGDREKCLNAGMD 1095
Query: 1201 DYVSKPFEDEQLYTAVARF 1219
DYVSKP + E L+ A+ RF
Sbjct: 1096 DYVSKPVKPEVLHAAIRRF 1114
>gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 951
Score = 312 bits (799), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 216/636 (33%), Positives = 318/636 (50%), Gaps = 111/636 (17%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
R ++E E+ A+AA AKSQFLA +SHEIRTPMNG+LGM ++LM T LD Q
Sbjct: 257 RTRELELTVAELQRAMEAAQAASRAKSQFLANMSHEIRTPMNGMLGMAELLMATRLDEQQ 316
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
+ + SG+ L+S+IND+LD +KIE+G+LE E F+L D + +V+ L + A++KG
Sbjct: 317 RRFVSSVRRSGEALLSIINDILDFSKIEAGKLELEETAFNLEDTVADVIELLAETAHRKG 376
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
+E+A V + VP V++GD R Q++ NLVGN++KFT D+G + +S L +
Sbjct: 377 LEIAALVENDVPPVLLGDQVRVHQVLMNLVGNAVKFT-DQGEVIISGMLKE--------- 426
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
+HK + + +L+ V D
Sbjct: 427 -----------EHKEE-----------------------------------VTVLIRVSD 440
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+GI E + RIF F QAD+ST+R YGGTG+GL+I+R LVELMGGEIG SE G GST
Sbjct: 441 TGIGISDEVKGRIFDGFSQADNSTTRKYGGTGLGLTIARQLVELMGGEIGVESEVGRGST 500
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
F FT+ + S P+ + V G RAL++DD S + + L M +
Sbjct: 501 FWFTLKLH--KEASERPRSGEAV----SLAGYRALLVDDNSTNLSIMHHELHAWGMTADM 554
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
A++ A + LA++ D+ E+ G+E++R +
Sbjct: 555 ADNAATALGLMRHAARAESPYDLAIL----DMLMPEM--------------NGIELARAI 596
Query: 1017 ---PKI----FLLATSISE-TDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSK 1064
P + L+ TS+ + D E GI ++KP+R S +I S+
Sbjct: 597 KANPDLAQTRLLMVTSVGQYGDEAEAVKAGIGCYISKPVRQSRLYSAIIDLLGVGMSSAV 656
Query: 1065 KLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
+ QQ + G + ++L+V+DN VN+ VA L+ G V+ + G A+D +T
Sbjct: 657 QPQQSAEP---GPVRLSAEVLLVEDNPVNQDVATAMLECSGCRVSVANNGAEALDVMT-R 712
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
FD FMD QMP MDG+ AT IR E N Q SG + I+A+TA
Sbjct: 713 RRFDLIFMDCQMPVMDGYAATRAIRQCEG--NSQAGSGRRT-------------IIALTA 757
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
++ E+C GMDDY++KPF QL + R+
Sbjct: 758 HAMRGDREECFAAGMDDYLTKPFTQAQLVAVLQRWL 793
>gi|345863470|ref|ZP_08815681.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345125548|gb|EGW55417.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 1149
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 216/648 (33%), Positives = 319/648 (49%), Gaps = 114/648 (17%)
Query: 589 HIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM 648
H F + I+ + E+ E K +AE+A AKS+FLA +SHEIRTPMNGVLGM ++L
Sbjct: 462 HYFSMVMRDISDRKQVERELFEAKEKAESAAKAKSEFLAMMSHEIRTPMNGVLGMAELLA 521
Query: 649 DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLF 708
T+LD Q ++ + SG L+ +IND+LD +K E+G++E E + F L + + + L
Sbjct: 522 GTKLDDEQQEFLEVITQSGNSLLGIINDILDFSKAEAGKIELEAISFDLERTIYDAVRLL 581
Query: 709 SSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD 768
S+ A+ KG+EL I +P V+GD GR RQIITNL GN+IKFTQ +GHI ++V
Sbjct: 582 SANASSKGLELIISYPPELPRQVMGDAGRIRQIITNLAGNAIKFTQ-QGHIAINV----- 635
Query: 769 VRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRI 828
E K D T+
Sbjct: 636 ------------------------------------------ETTKATDGTS-------- 645
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
+ ++V DTG+GIP Q R+F F QADSST+R YGGTG+GL+IS+ LVELMGG IG
Sbjct: 646 RFRISVIDTGIGIPEAQQQRLFKSFTQADSSTTRKYGGTGLGLAISKQLVELMGGSIGVS 705
Query: 889 SEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQ 948
S G GSTF + + P+ D+S L+ L++DD + + R L+
Sbjct: 706 STQGEGSTFWLEIPLGLSQ-----PREPLGHADLSR---LKCLILDDNLLNQRIFRDQLR 757
Query: 949 RLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD---VWDKEIGLVLHYMLKQQR 1005
M +H + A + ++ S + + L+D + + ++I L L M
Sbjct: 758 SCGMQIHTVTTGDEALTLATEMASAN--KPFDIFLLDFNLPGINGEQIALRLRQM----- 810
Query: 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKK 1065
+ P I LL +S + D + G L KP+ +L + S
Sbjct: 811 -----PAYKETPMI-LLTSSGNRGDAKHFEEVGFDAYLIKPVPHQILHEAIE--GVVSNT 862
Query: 1066 LQQKRKK-PSLGHLLKG------------KQILVVDDNMVNRRVAEGALKKHGAIVTCVD 1112
LQ K ++ + H+++G +IL+V+D + N++VA L K G V D
Sbjct: 863 LQHKEQEIITQYHVIEGHTQPSNKTEHIDAKILLVEDLLPNQKVASSVLSKMGCTVEIAD 922
Query: 1113 CGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNV 1172
GR A+++L +FD MD QMPEMDG +AT IR E +
Sbjct: 923 NGRIALERLA-EDSFDIVLMDCQMPEMDGLEATRAIRQRERDTGT--------------- 966
Query: 1173 GLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
H PI+AMTA+ + + +QC++ GMDD++SKPFE EQL + ++
Sbjct: 967 ---HTPIIAMTANNMASDRKQCLEAGMDDFISKPFEREQLAKLLGKWL 1011
>gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1346
Score = 311 bits (796), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 246/739 (33%), Positives = 356/739 (48%), Gaps = 136/739 (18%)
Query: 545 VSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVV-----------------VITLLV 587
VS LD DP R H + +P +G V + LL
Sbjct: 541 VSKLDNNDPFRLHLEFQDIQSLLAIPLMGPEGCLGFVGLDSVRSTRTWSDSEINLFALLA 600
Query: 588 GHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
+ +A + + E D + ME +AE A AKS+FLA +SHEIRTPMNGV+GM +L
Sbjct: 601 KLLVNAQLRQ--SREQDLKDAME---QAEIATQAKSEFLANMSHEIRTPMNGVIGMTDLL 655
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
+DTEL Q A++ +SG+ L++LIND+LD +KIE+GRLE E V F+LH +L+++ SL
Sbjct: 656 LDTELRPEQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVNFNLHYLLEDLASL 715
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
+ +A++KG+EL VP V GDPGR RQI+TNLVGN+IKFT +G + V V +
Sbjct: 716 MAVRADEKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTH-QGEVVVMVQKS- 773
Query: 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR 827
+ RS +KS NS +D V
Sbjct: 774 EARS---------QKSDNS----ADDVL-------------------------------- 788
Query: 828 IKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF 887
LL TV+DTG+G+P + +F F Q D+ST+R +GGTG+GL+ISR L E+MGGE+G
Sbjct: 789 --LLFTVQDTGIGVPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGV 846
Query: 888 VSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV-SEFRGLRALVIDDKSIRAEVTRYH 946
SE G G F FT T L K ++ +P + + G L++DD E+ +
Sbjct: 847 QSEYGRGCKFWFTARLT------LQKKQEEPLPALPQDLHGEHILIVDDNETNLEILKKQ 900
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD-KEIGLVLHYMLKQQR 1005
L+ + V A+ A L S +A++ + D E+G ++
Sbjct: 901 LEAWGVEVEQASEGHEALLILDRVYSEGNYFAMAILDMHMPGMDGAELGRLIR------- 953
Query: 1006 RKGGLEISRNLPKIFLLATSISET-DRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSK 1064
+I ++LP + L TS+ D + G L KP+R S L S+
Sbjct: 954 ---NTDILKDLPLVML--TSLGRPGDAKIFEEQGFNAYLNKPVRQSELFDTLLTVLSSAG 1008
Query: 1065 KL---------QQKRKKPSLGHLLKGK-QILVVDDNMVNRRVAEGALKKHGAIVTCVDCG 1114
K Q + K L+K K +LV +DN VN++VA G L K G VD G
Sbjct: 1009 KAPGHSIITRHQAREIKRQQSELIKFKGHVLVAEDNPVNQKVAVGLLNKMGLSADIVDTG 1068
Query: 1115 RAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLEN-----EINEQI------ASGE 1163
AV+ L ++D MD+QMPEMDG +AT +IR E+ E+ QI ++G+
Sbjct: 1069 LKAVEALQ-NQSYDLVLMDVQMPEMDGLEATRRIRAAEDRNQRSEVRNQISEERNQSTGD 1127
Query: 1164 ---SSAEMFGNVGLWH-------------------VPILAMTADVIQASNEQCMKCGMDD 1201
S + + +H +PI+AMTA + E+C+ GMDD
Sbjct: 1128 RRWESQPLNPSTPEYHNPSIPKSFNPKIPQSLNPKIPIIAMTAGAMHQDRERCLDAGMDD 1187
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV+KP QL T ++R+
Sbjct: 1188 YVTKPVNPGQLATVLSRWL 1206
>gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1625
Score = 310 bits (794), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 228/673 (33%), Positives = 332/673 (49%), Gaps = 114/673 (16%)
Query: 583 ITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLG 642
I + GHI I +++ ++ E + +A+ A AKS+FLA +SHEIRTPMNGV+G
Sbjct: 890 IVRVAGHIMD-----ITELKQSQLDLQEARDKAQEATRAKSEFLANMSHEIRTPMNGVIG 944
Query: 643 MLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLD 702
M +LMDTEL Q A++ +SG+ L++LIND+LD +KIE+GRLE E V F+L +L+
Sbjct: 945 MTDLLMDTELRPEQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVDFNLRYLLE 1004
Query: 703 NVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVS 762
++ SL + +A++KG+EL VP V GDPGR RQI+TNLVGN+IKFT +G + V
Sbjct: 1005 DLASLMAVRADEKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTH-QGEVVVR 1063
Query: 763 VHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTM 822
V RS+V D
Sbjct: 1064 VQ-----RSEVSADD--------------------------------------------- 1073
Query: 823 EQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMG 882
+ LL TV+DTG+GIP + +F F Q D+ST+R +GGTG+GL+ISR L E+MG
Sbjct: 1074 -----VLLLFTVQDTGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMG 1128
Query: 883 GEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV-SEFRGLRALVIDDKSIRAE 941
GE+G SE G G F FT T L K ++ +P + + G L++DD E
Sbjct: 1129 GEVGVQSEYGRGCKFWFTARLT------LQKKQEEPLPALPQDLHGEHILIVDDNETNLE 1182
Query: 942 VTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYML 1001
+ + L+ + V A+ A L S A+ ++D + + G L
Sbjct: 1183 ILKKQLEAWGVEVEQASGGHEALRILDRVYSEG--NSFAMAILDMHMPAMDGG-----EL 1235
Query: 1002 KQQRRKGGLEISRNLPKIFLLATSISET-DRDELKSDGIVTLLTKPLRLSVLIGCFQEDP 1060
Q+ +K G +LP + L TS+ D + G L KP+R S L
Sbjct: 1236 GQRIKKSGK--FNDLPLVML--TSLGRPGDAKIFEEQGFNAYLNKPVRQSELFDTLLTVL 1291
Query: 1061 ESSKKL---------QQKRKKPSLGHLLKGK-QILVVDDNMVNRRVAEGALKKHGAIVTC 1110
S+ K Q + K L+K K +LV +DN VN++VA G L K G
Sbjct: 1292 SSAGKAPGHSIITRHQAREIKRQQSELIKFKGHVLVAEDNPVNQKVAVGLLNKMGLSADI 1351
Query: 1111 VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE-QIASGE---SSA 1166
VD G AV+ L ++D MD+QMPEMDG +AT +IR +E+ E + +G+ S
Sbjct: 1352 VDTGLKAVEALQ-NQSYDLVLMDVQMPEMDGLEATQEIRRMEHGTEEREQRTGDRRWESQ 1410
Query: 1167 EMFGNVGLWH-------------------VPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
+ + +H +PI+AMTA + ++C + GMDDYVSKP
Sbjct: 1411 PLNPSTPEYHNPSIPKSFNPKIPQSLNPKIPIIAMTAGAMNQDRDRCFEAGMDDYVSKPV 1470
Query: 1208 EDEQLYTAVARFF 1220
++L + R+
Sbjct: 1471 SHQELLKVLNRWL 1483
>gi|334343013|ref|YP_004555617.1| integral membrane sensor hybrid histidine kinase [Sphingobium
chlorophenolicum L-1]
gi|334103688|gb|AEG51111.1| integral membrane sensor hybrid histidine kinase [Sphingobium
chlorophenolicum L-1]
Length = 914
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 217/631 (34%), Positives = 308/631 (48%), Gaps = 99/631 (15%)
Query: 596 NRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAA 655
R Q+E E+ K RAE A AKSQFLA +SHEIRTPMNGV+G ++L DT L+A+
Sbjct: 367 ERTIQLEESETELRAAKNRAEEATRAKSQFLANMSHEIRTPMNGVIGAAELLNDTRLNAS 426
Query: 656 QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQK 715
Q +Y S L+ LIND+LD +KIE+GRLE E V F L D L + L F+ +A +K
Sbjct: 427 QREYLTMITQSADALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAFAGRATEK 486
Query: 716 GIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775
GIELA +V+ VP+ + GDP R RQ++ NLVGN+++FT+ +G + + V
Sbjct: 487 GIELACHVALDVPDALEGDPHRLRQVVINLVGNALRFTE-RGEVVMDV------------ 533
Query: 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVE 835
+V+ D+ ++W F V
Sbjct: 534 ----------AVERMEDQ--------------QAWLRF-------------------AVS 550
Query: 836 DTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGS 895
DTG GI + + IF F QAD+S +R +GGTG+GL+I+ LV+LMGG + S G GS
Sbjct: 551 DTGPGIAADKRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGRLELDSCVGRGS 610
Query: 896 TFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH 955
F FT+ F + + P +Q GL L++DD + + ++ M
Sbjct: 611 VFHFTIAFALAQGETPHPPAEQ-----PSLHGLPVLIVDDNATNRRILDEMIRGWGMKPL 665
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
S A + L + L LVL+D + D + G + K+ R GG E
Sbjct: 666 AVESGPKALAALRNAAGIGR--PLRLVLLDMMMPDMD-GFAVA---KEIARGGGDE---- 715
Query: 1016 LPKIFLLATSISETDRDELK----SDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
P + +L S +DE+ + GI L KP+R S L+ + + + +
Sbjct: 716 RPAVIML----SSAQKDEMARRNWATGIAAFLLKPVRQSELLEAIFAVLKVTVREETAPP 771
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
+P+ H +LV +DN VN+R+A L+K G V V G AV+ L +FD
Sbjct: 772 QPA-PHDRPSLHVLVAEDNAVNQRLALRLLEKRGHRVKIVGDGAQAVEALA-QDSFDVVL 829
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMPEMDGFQAT IR E + H+PI+AMTA ++
Sbjct: 830 MDVQMPEMDGFQATAAIRERERGTGQ------------------HMPIVAMTAHAMRGDR 871
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
E+C+ GMDDY+SKP E Y V F S
Sbjct: 872 ERCLAAGMDDYISKPLRAEDFYEVVEGRFAS 902
>gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
Length = 1767
Score = 306 bits (783), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 203/621 (32%), Positives = 314/621 (50%), Gaps = 105/621 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K A+AA AK FLA +SHEIRTPMN ++GM Q+ + TELD Q +Y + +
Sbjct: 1025 ELLVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERA 1084
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K L+S+IND+LD +KIE+G+L+ E VPF L +L+++ +FS KA K +EL V+
Sbjct: 1085 SKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPN 1144
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP + GD R Q++ NL+ N+IKFT+ +G + +S LN
Sbjct: 1145 VPRHLFGDSLRLGQVLINLMNNAIKFTE-RGEVLLS---------------------LNL 1182
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V+ ++D V L +V D+G+G+ E Q
Sbjct: 1183 VEQQNDDVV----------------------------------LRFSVRDSGIGLTAEQQ 1208
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
++F F QAD+ST+R YGGTG+GL+I + LVELMGG IG S+ G GSTF FTV
Sbjct: 1209 AKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFTV----- 1263
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
L Q + E G+ LV DD + ++ R L+ + V S + A +
Sbjct: 1264 ---KLQISSGQKLTVAQELEGMSILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVT- 1319
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
CS + A+ LID + + + G+ +KQ +++N P+I +++
Sbjct: 1320 ---RCSQQ---EYAVALIDWKMPNLD-GIETAKQIKQ--------LAKNAPRILMVSAHA 1364
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK----PSLGHLLKGK 1082
++ ++++ G+ ++KP+ S L+ + L +R P L LKGK
Sbjct: 1365 TQEFLSQIEALGLAGYISKPISASRLLDGIMNSLGRAGVLPVRRNSESIDPKLLLPLKGK 1424
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+IL+V+DN +N VA L++ G I++ G+ A+DKL +FD MD QMP MDG+
Sbjct: 1425 RILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLA-QQSFDLVLMDCQMPVMDGY 1483
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
QAT IR L +P++AMTA+ + E C+K GM+D+
Sbjct: 1484 QATQAIRKRPE--------------------LAELPVIAMTANAMAGDKEMCLKAGMNDH 1523
Query: 1203 VSKPFEDEQLYTAVARFFMSG 1223
++KP E LY + ++ +G
Sbjct: 1524 IAKPIEVNLLYQTLLKYLGAG 1544
>gi|94264445|ref|ZP_01288234.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455135|gb|EAT05357.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1009
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 224/659 (33%), Positives = 331/659 (50%), Gaps = 113/659 (17%)
Query: 566 KPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKAR-AEAADVAKSQ 624
KPP P + A G V + ++ A + + + D E AR A+AA++AKS+
Sbjct: 303 KPPYPLATVLAVGGAVFLITMLFSSLAALLFSWRKWQEDARLKAEEMARDAQAANLAKSE 362
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FLA +SHEIRTP+NGV+GM +L++TEL++ Q YA+T SG+ L+SLIND+LD +KIE
Sbjct: 363 FLANMSHEIRTPLNGVIGMTGLLLETELNSQQRRYAETMLYSGESLLSLINDILDLSKIE 422
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+ +LE E + F L +D+ + + +A+++G+EL S + +V GD GR RQ++ N
Sbjct: 423 ARQLELEEIEFDLAGTIDDFAATMAVRAHERGLELICLFSPGLSPLVKGDCGRLRQVLAN 482
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVV 804
LVGNSIKFT+ KG + + KV +DK E L S +
Sbjct: 483 LVGNSIKFTE-KGEVAI----------KVSSRDKDEENVLLSFE---------------- 515
Query: 805 DRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTY 864
+ DTGVGIP E IF F Q D+ST+R Y
Sbjct: 516 -----------------------------ISDTGVGIPQEKLTTIFEKFSQVDASTTRKY 546
Query: 865 GGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE 924
GGTG+GL+I+R LV+LMGGEI S G+GS FSFTV F K +P E
Sbjct: 547 GGTGLGLAITRQLVDLMGGEITVSSREGSGSVFSFTVLFR---------KVAGEIPTTME 597
Query: 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLI 984
+ + LV+DD + EV +L +M +A A L + A+ L+
Sbjct: 598 LQDVPVLVVDDNATNREVLESYLNSWKMRPTMAEDGATALQKLQQAVAGD--SPFAMALL 655
Query: 985 DKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGI-VTLL 1043
D + + G+ L +K+ + +L TS+ D D+ + + L
Sbjct: 656 DMQMPGMD-GMALARAIKEDSALSATPL--------ILLTSLGSGDGDQAERRHLFAACL 706
Query: 1044 TKPLR---LSVLIGCFQEDPESSKKLQQKRKKPSLGHL---LKGKQ--ILVVDDNMVNRR 1095
KPLR L +I SS K +K +KPS G + L GKQ IL+V+DN++N++
Sbjct: 707 NKPLRQRELRHVISMI-----SSGKAVEKAEKPSFGEMLVSLDGKQPRILLVEDNIINQQ 761
Query: 1096 VAEGALKKHGAIVTCVDCGRAAVDKL-TPPHNFDACFMDLQMPEMDGFQATWQIRHLEN- 1153
VA+ + K G + G+ A+D L + P +D MD+QMP MDG AT +IR +++
Sbjct: 762 VAKAVMAKIGINIHVAANGQEALDALGSIP--YDLVVMDIQMPVMDGLTATRKIRAVDST 819
Query: 1154 EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
+N QI PI+AMTA V++ +C+ GM+DY++KP + L
Sbjct: 820 ALNPQI------------------PIIAMTARVMKGDQAECLAAGMNDYLTKPLVPQAL 860
>gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
Length = 1767
Score = 305 bits (781), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 203/621 (32%), Positives = 313/621 (50%), Gaps = 105/621 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K A+AA AK FLA +SHEIRTPMN ++GM Q+ + TELD Q +Y + +
Sbjct: 1025 ELLVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERA 1084
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K L+S+IND+LD +KIE+G+L+ E VPF L +L+++ +FS KA K +EL V+
Sbjct: 1085 SKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPN 1144
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP + GD R Q++ NL+ N+IKFT+ +G + +S LN
Sbjct: 1145 VPRHLFGDSLRLGQVLINLMNNAIKFTE-RGEVLLS---------------------LNL 1182
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V+ ++D V L +V D+G+G+ E Q
Sbjct: 1183 VEQQNDDVV----------------------------------LRFSVRDSGIGLTAEQQ 1208
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
++F F QAD+ST+R YGGTG+GL+I + LVELMGG IG S+ G GSTF FTV
Sbjct: 1209 AKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFTV----- 1263
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
L Q + E G+ LV DD + ++ R L+ + V S + A +
Sbjct: 1264 ---KLQISSGQKLTVAQELEGMSILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVT- 1319
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
CS + A+ LID + + + G+ +KQ +++N P+I +++
Sbjct: 1320 ---RCSQQ---EYAVALIDWKMPNLD-GIETAKQIKQ--------LAKNAPRILMVSAHA 1364
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK----PSLGHLLKGK 1082
++ ++++ G+ ++KP+ S L+ + L +R P L LKGK
Sbjct: 1365 TQEFLSQIEALGLAGYISKPISASRLLDGIMNSLGRAGVLPVRRNSESIDPKLLLPLKGK 1424
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+IL+V+DN +N VA L++ G I++ G+ A+DKL +FD MD QMP MDG+
Sbjct: 1425 RILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLA-QQSFDLVLMDCQMPVMDGY 1483
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
QAT IR L +P++AMTA+ + E C+K GM+D+
Sbjct: 1484 QATQAIRKRPE--------------------LAELPVIAMTANAMAGDKEMCLKAGMNDH 1523
Query: 1203 VSKPFEDEQLYTAVARFFMSG 1223
++KP E LY + ++ G
Sbjct: 1524 IAKPIEVNLLYQTLLKYLGGG 1544
>gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1209
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 207/611 (33%), Positives = 308/611 (50%), Gaps = 81/611 (13%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
E +A A AKS+FLA +SHEIRTPMN ++GM ++ +TEL Q +Y NS +
Sbjct: 537 EAARQAREASRAKSEFLANMSHEIRTPMNAIMGMTELAGNTELTPEQKEYLSIIQNSSES 596
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L++L+ND+LD +KIE+G+L+ E++ F L + + N + + A+QKG+EL + V + +
Sbjct: 597 LLALLNDILDFSKIEAGKLDLEYIDFSLRETVHNAVYSVAMLAHQKGVELVVRVEPDMED 656
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
GDP R RQ++ NLVGN+IKFTQ +G + V V LA + +QH
Sbjct: 657 GFKGDPDRLRQVLVNLVGNAIKFTQ-QGEVQVEVRLA---------------AAEEMLQH 700
Query: 790 KS-DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
+ D+ Y L ++++L V DTG GI + Q
Sbjct: 701 AARDEGY-----------------------------LSKLQILFRVVDTGSGIAWDKQEG 731
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
IF F+QAD S+ R YGGTG+GLSIS LVE+M G I SEPG GSTFSF + GE
Sbjct: 732 IFEAFVQADGSSRRKYGGTGLGLSISSRLVEMMKGRIWMQSEPGRGSTFSFVLPLEPGE- 790
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
D + +Q + DVS+ +GL+ L++DD + A + L+ M +A S L
Sbjct: 791 ---DAQKEQVLGDVSQLQGLKVLIVDDNANNAGILEESLRYWWMQPAIAQSGGQGLKMLE 847
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
S + ++L+D + + VL M Q ++ P I +L +
Sbjct: 848 HAASAN--DPFQVMLLDMHMPEMNGLDVLEAM---QDMDPSVK-----PVILVLTSGAQL 897
Query: 1029 TDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKG---KQIL 1085
D +L++ G+ L KP++ S L+G + +Q++ + G + G +IL
Sbjct: 898 GDSRKLRTYGVKAYLFKPVKQSKLLGAILDAVSGGMDHEQEQAQEGKGEEIDGLRPLKIL 957
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
+ +DN VN+ +A L + G V V GR AVD L NFD MD+QMP MDG +AT
Sbjct: 958 LAEDNEVNQLLAVRILSQEGHQVRGVHDGREAVDALA-RENFDLVLMDVQMPVMDGLEAT 1016
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
IR E E GL P++A+TA ++ E+C++ GMD YV K
Sbjct: 1017 RLIRAREQE-----------------EGLLRTPVIAITAHALKGDREKCLEAGMDSYVQK 1059
Query: 1206 PFEDEQLYTAV 1216
P L+ +
Sbjct: 1060 PIRKADLFKEI 1070
>gi|144898719|emb|CAM75583.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
Length = 1067
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 209/633 (33%), Positives = 318/633 (50%), Gaps = 100/633 (15%)
Query: 592 HAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
H I QVE+ E +E RAEAA+ AKS+FLAT+SHEIRTPMNG++GM +L+DT+
Sbjct: 382 HKEITDRKQVEDMLKEAVE---RAEAANRAKSEFLATMSHEIRTPMNGIIGMTGLLLDTQ 438
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
L Q+ +A T S + L+S+IND+LD +K+E+GRLE E+ PF + +++ V+ + + +
Sbjct: 439 LTREQMHFANTVRTSAEALLSIINDILDFSKMEAGRLEFEYGPFEIRPLIEGVVDILAPR 498
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
+ +EL V V GD GR RQ++ NL GN+IKFT+ SVH+ +R+
Sbjct: 499 VKGRNVELTYVVPPSARGVFYGDAGRLRQVLLNLAGNAIKFTE-----IGSVHIG--IRA 551
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
+ + D V +L
Sbjct: 552 ETEFDDMV-------------------------------------------------RLR 562
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
+ V DTG+GI A+ R+FT F QADSST+R +GGTG+GL+ISR +V++MGGEIGF S
Sbjct: 563 IEVVDTGIGISDNAKSRLFTMFTQADSSTARRFGGTGLGLAISRRIVDMMGGEIGFDSTE 622
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G GSTF F V+ + + D + ++ G R LV+DD + EV ++ L+
Sbjct: 623 GQGSTFWFQVSLRRSDEQTSD------IEVINPLEGARILVVDDNATNREVFQHQLENWG 676
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
V + + A ++ + LVL+D + GL L +++ L+
Sbjct: 677 AQVDLVDGA--AGGLMAIRQAQHSAHPYQLVLLDHHMPGMS-GLDLAAVVRADPTTADLK 733
Query: 1012 ISRNLPKIFLLATSISETDRDELKSD-GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKR 1070
+ +LA+S + +D +L + + +L+KP+R S L+ C S+ L Q+
Sbjct: 734 L--------VLASSANPSDFRQLNASLRLDDVLSKPVRQSALLDCLMSRLGRSQALPQQT 785
Query: 1071 KKPSLGHLLK---GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
+L L +ILVV+DN +N++VA G L K G D G AV L ++
Sbjct: 786 TLSALSDLPAPALALRILVVEDNPINQQVAVGLLAKLGHRADVADDGAEAV-ALVERGDY 844
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD+QMP MDG AT IR L G V I+AMTA+ +
Sbjct: 845 DLILMDMQMPRMDGLTATGIIRRLP-------------------AGKGEVTIIAMTANAM 885
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ + C+ GM+DY++KP + +L + R+
Sbjct: 886 EGDRDACLAAGMNDYLAKPIDRHRLAAVLQRWI 918
>gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus
capsulatus str. Bath]
gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus
capsulatus str. Bath]
Length = 1177
Score = 303 bits (776), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 198/601 (32%), Positives = 304/601 (50%), Gaps = 95/601 (15%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS FLA +SHEIRTPMNGVLGML++L DT++ Q D +TA NS + L+ +IN +LD +
Sbjct: 521 KSAFLANMSHEIRTPMNGVLGMLELLKDTDMSREQWDLVETASNSAESLLEIINSILDFS 580
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
K+E+G++E E F+L D+++ V +L + +A+ KG+EL ++ +P + IGDP R RQI
Sbjct: 581 KLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQI 640
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+TNL+GNS+KFT+ +G + V V + + D+
Sbjct: 641 LTNLLGNSVKFTE-RGEVSVKVMQGEAGAKRTDL-------------------------- 673
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
+F++ D TG+GI + Q R+F PF QAD STS
Sbjct: 674 ----------SFEIRD-------------------TGIGIAPDVQARLFQPFTQADGSTS 704
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R +GGTG+GLSI R LVELMGG IG S PG GS F FT+ L+P P
Sbjct: 705 RRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTL--------PLEPLPGASAPA 756
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
+ +F R LV+DD + + ++L + V A A + L S + L
Sbjct: 757 LPDFSHRRVLVVDDNATNRVILSHYLTHWGLEVDEAERGDTALNRLRTALHESRPYDIVL 816
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVT 1041
+ + D H + + + GL ++ P++ L +S T EL++ GI
Sbjct: 817 LDLHMPYMDG------HELARAMNAEPGL---KDTPRLLL--SSGGLTGEAELRALGIAR 865
Query: 1042 LLTKPLRLSVLIGCFQEDPESSKKLQQK--RKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
L KP+R S+L E + +Q++ K ++ +G+++LVV+DN VN++V
Sbjct: 866 SLLKPVRQSLLFNAIAEVLAAKATVQRRPAAKTETVLPAYEGRRVLVVEDNRVNQKVIVA 925
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
L K G + D G+AA++ L ++D MD QMP + G++AT ++R E
Sbjct: 926 MLGKFGIVPDVADNGQAALE-LLARSSYDLVLMDCQMPVLGGYEATGELRAREM------ 978
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ G P++A+TA E+C+ GMDDY+SKP ++L A+ R+
Sbjct: 979 -----------SAGGRRTPVVALTAHAATGEREKCLAAGMDDYLSKPISRDRLAEALERW 1027
Query: 1220 F 1220
Sbjct: 1028 L 1028
>gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37]
gi|119863342|gb|ABM02819.1| amino acid-binding domain sensor hybrid histidine kinase
[Psychromonas ingrahamii 37]
Length = 1574
Score = 303 bits (776), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 211/622 (33%), Positives = 318/622 (51%), Gaps = 109/622 (17%)
Query: 618 ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDV 677
A++AKS+FLA +SHEIRTPMN ++G+ ++ ++ ++ DY H+SG L+ +IN +
Sbjct: 823 ANMAKSEFLANMSHEIRTPMNAIIGLSELSLNQDMTPQLRDYLSKIHSSGNSLLGIINGI 882
Query: 678 LDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGR 737
LD +KIE+G+L+ E + F L DVLDN+ + F +K IEL + VP ++GDP R
Sbjct: 883 LDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELITSIDPDVPWHLVGDPLR 942
Query: 738 FRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNT 797
QI TNL+ N+IKFT +KG I + S K DK
Sbjct: 943 TGQIFTNLINNAIKFT-NKGQITICA----------------------SCLEKDDK---- 975
Query: 798 LSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
+++LL +V DTG+GIP + +F PF QAD
Sbjct: 976 -----------------------------QVRLLFSVADTGLGIPKDRIASLFEPFAQAD 1006
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQ 917
STSR +GGTG+GLSI + LVE M G I SE G GS FSF + F + N D K
Sbjct: 1007 GSTSRKHGGTGLGLSICKRLVEEMNGRIWIESEQGKGSVFSFELEFGVSQSNE-DNKL-- 1063
Query: 918 YVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLP 977
+P RGL ALV+DD + +V L L+ V S + A S L + +
Sbjct: 1064 LLPPA--LRGLHALVVDDNPVTLKVIEKMLIHLKFNVTTTESGEKALSVLENALGNNT-- 1119
Query: 978 QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR------NLPKIFLLATSISETDR 1031
+D + D ++G + G+E ++ ++PK+ ++ +S +DR
Sbjct: 1120 ------VDLAIIDWQMGGI-----------DGIETAKKIKENPSIPKMPMVL--MSGSDR 1160
Query: 1032 DEL-----KSDGIVTLLTKPLRLSVLI----GCFQEDPESSKKLQQKRKKPSLG-HLLKG 1081
D L K G + + KP+ S+L+ F + +K L++K K S + G
Sbjct: 1161 DGLLGQKSKQVGFDSFVLKPVNRSILVETILTVFGYRDDINKNLKRKIKVDSARLDAIGG 1220
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+IL+VDDN +NR+VA L+ G +VT GR AV+ + H FDA MD+QMPE+DG
Sbjct: 1221 AKILLVDDNEINRQVAREFLENAGLLVTTATNGREAVNSV-KSHVFDAVLMDVQMPEIDG 1279
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
++AT +IR E ++ ++ G +PI+AMTA ++ E+C+ GM+D
Sbjct: 1280 YEATQKIRRWE----------KTRVDLQPTDGSPVLPIIAMTAHAMEGDKERCLAAGMND 1329
Query: 1202 YVSKPFEDEQLYTAVARFFMSG 1223
YV+KP + QL+ A++R+ G
Sbjct: 1330 YVTKPIDTRQLFEALSRWIKPG 1351
>gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus str. Bath]
Length = 1177
Score = 303 bits (776), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 198/601 (32%), Positives = 304/601 (50%), Gaps = 95/601 (15%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS FLA +SHEIRTPMNGVLGML++L DT++ Q D +TA NS + L+ +IN +LD +
Sbjct: 521 KSAFLANMSHEIRTPMNGVLGMLELLKDTDMSREQWDLVETASNSAESLLEIINSILDFS 580
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
K+E+G++E E F+L D+++ V +L + +A+ KG+EL ++ +P + IGDP R RQI
Sbjct: 581 KLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQI 640
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+TNL+GNS+KFT+ +G + V V + + D+
Sbjct: 641 LTNLLGNSVKFTE-RGEVSVKVMQGEAGAKRTDL-------------------------- 673
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
+F++ D TG+GI + Q R+F PF QAD STS
Sbjct: 674 ----------SFEIRD-------------------TGIGIAPDVQARLFQPFTQADGSTS 704
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R +GGTG+GLSI R LVELMGG IG S PG GS F FT+ L+P P
Sbjct: 705 RRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTL--------PLEPLPGASAPA 756
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
+ +F R LV+DD + + ++L + V A A + L S + L
Sbjct: 757 LPDFSHRRVLVVDDNATNRVILSHYLTHWGLEVDEAERGDTALNRLRTALHESRPYDIVL 816
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVT 1041
+ + D H + + + GL ++ P++ L +S T EL++ GI
Sbjct: 817 LDLHMPYMDG------HELARAMNAEPGL---KDTPRLLL--SSGGLTGEAELRALGIAR 865
Query: 1042 LLTKPLRLSVLIGCFQEDPESSKKLQQK--RKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
L KP+R S+L E + +Q++ K ++ +G+++LVV+DN VN++V
Sbjct: 866 SLLKPVRQSLLFNAIAEVLAAKATVQRRPAAKTETVLPAYEGRRVLVVEDNRVNQKVIVA 925
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
L K G + D G+AA++ L ++D MD QMP + G++AT ++R E
Sbjct: 926 MLGKFGIVPDVADNGQAALE-LLARSSYDLVLMDCQMPVLGGYEATGELRAREM------ 978
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ G P++A+TA E+C+ GMDDY+SKP ++L A+ R+
Sbjct: 979 -----------SAGGRRTPVVALTAHAATGEREKCLAAGMDDYLSKPISRDRLAEALERW 1027
Query: 1220 F 1220
Sbjct: 1028 L 1028
>gi|392373817|ref|YP_003205650.1| Sensor protein [Candidatus Methylomirabilis oxyfera]
gi|258591510|emb|CBE67811.1| putative Sensor protein [Candidatus Methylomirabilis oxyfera]
Length = 1049
Score = 303 bits (776), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 209/624 (33%), Positives = 319/624 (51%), Gaps = 109/624 (17%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
M + K+ AEAA AK +FLA +SHEIRTP+N ++GM ++ +DT L Q ++ Q +S
Sbjct: 506 MQQAKSVAEAASRAKGEFLAKMSHEIRTPLNAIIGMTELTLDTALTTEQREFLQVVQSSS 565
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+++IND+LD ++IE+G++ E FHL +V++ V + S +A +KG+EL YV +
Sbjct: 566 EALLTVINDILDLSRIEAGQMAIEETAFHLREVVEGVAEVLSIRAQKKGLELTCYVDPAL 625
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P V+GDP R RQ++ NLVGN+IKFT+ +G + + V R++V
Sbjct: 626 PSRVLGDPMRLRQVLVNLVGNAIKFTE-RGEVTIQVE-----RTQV-------------- 665
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
E GRI + ++V DTG+GIP Q
Sbjct: 666 -----------------------------------EAPGRIGVHISVADTGIGIPTHQQA 690
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF--SFTVTFTE 905
RIF PF QAD++T+R +GG+G+GLSIS+ L+ELMGG I SE G GSTF VT E
Sbjct: 691 RIFDPFAQADATTARRFGGSGLGLSISKALMELMGGRIWVESEVGKGSTFHCDLVVTVAE 750
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
E ++ + Y PD RG+ LV+DD + R L M V A + A +
Sbjct: 751 PEAETVRAGRETY-PD---LRGVAVLVVDDNPTNRLILRRTLHTWGMTVEEAAGGEEALA 806
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT- 1024
L + + +V++D + D + G + ++Q R + K+ +L++
Sbjct: 807 LLRTSHAG-----YQIVILDHHMPDMD-GAAVARAIRQDPRLQDI-------KLVMLSSW 853
Query: 1025 -SISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQ---KRKKPSLG 1076
+ R++L GI +LTKP++ L +L+G + E+ + + ++P+L
Sbjct: 854 EGLPTATREDL---GITVVLTKPVKQSKLLDMLMGLLRRAEEAEAPAEPSIPEARRPTL- 909
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
+ IL+V+DN+ N+ + L+K G V + AA +D MD+QM
Sbjct: 910 ----QRHILLVEDNVDNQNLVRRILEKVGYWV-VIAGNGAAAVNAVRQARYDLILMDVQM 964
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PEMDGF+AT IR E E G+ VPI+AMTA I EQC++
Sbjct: 965 PEMDGFEATRAIRSWERE-----------------HGVGRVPIIAMTAHAIAGYREQCLE 1007
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
GMDDY+SKP + + L V R+
Sbjct: 1008 QGMDDYLSKPLKKQVLLDTVGRYL 1031
>gi|149190709|ref|ZP_01868976.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
gi|148835475|gb|EDL52445.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
Length = 832
Score = 303 bits (775), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 201/609 (33%), Positives = 301/609 (49%), Gaps = 112/609 (18%)
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FL+T+SHEIRTPMNGV+GM +L+DT+LD Q+ +T NS + L+S+IND+LD +KIE
Sbjct: 305 FLSTMSHEIRTPMNGVIGMTNLLLDTKLDEQQIRMTETTKNSAESLLSIINDILDFSKIE 364
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G+++ E + F L +V+++V ++ A QKGI+L + + GDPGR RQ++ N
Sbjct: 365 AGKIDLELIDFDLGEVVEDVGAMLYFAAEQKGIQLVCPATPVMDLCYRGDPGRIRQVLNN 424
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVV 804
LV N+IKFT+D G + V V V +K L S+
Sbjct: 425 LVSNAIKFTED-GEVAVYVT----------VDEKRLTDSI-------------------- 453
Query: 805 DRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTY 864
L + DTG+GI E Q ++F+ F QADSST+R Y
Sbjct: 454 -------------------------LRFEIRDTGIGISEEQQQKLFSRFSQADSSTTRKY 488
Query: 865 GGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE 924
GGTG+GLSIS+ L E+MGGEIG SE G GSTF FTV + S+ Y+P +
Sbjct: 489 GGTGLGLSISKRLTEIMGGEIGVTSETGKGSTFWFTVCLENSSKQSV-----VYLP-TGD 542
Query: 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLI 984
+ R LV+DD + R E+ VANS + A L+D +A
Sbjct: 543 LKKQRILVVDDNDTNCNLLEQIFTRWEIPYQVANSGEEALRVLADNHKQQQFFTIA---- 598
Query: 985 DKDVWDKEIGLVLHYMLKQQRRKGGLEISR--------NLPKIFLLATSISETDRDELKS 1036
+L Y Q G+E+++ N ++ + ++ + D +++
Sbjct: 599 -----------ILDY---QMPNMDGVELAKQIQDNPDYNDTRLVMFSSVVQRGDAKKMQK 644
Query: 1037 DGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQK----RKKPSLGHLLKGKQILVVDDNMV 1092
G LTKP++ + L+ ++ S + + R P+ + IL+VDD
Sbjct: 645 AGFSGYLTKPMQQADLLSVLEKVSGLSGSDRSEAFVTRHTPAKKTQYNAR-ILIVDDVTT 703
Query: 1093 NRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLE 1152
N+ V + L K G V G A+ L P N+D +MD QMPEMDG++AT +IR+
Sbjct: 704 NQVVLQSLLSKFGIKVDKAKNGLEALAALRTPANYDLVYMDCQMPEMDGYEATREIRNTR 763
Query: 1153 N-EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
N IN I P++AMTA+ +Q E+C++ GMDDY+SKP +
Sbjct: 764 NININHSI------------------PVVAMTANALQGDREKCLEAGMDDYISKPINAKA 805
Query: 1212 LYTAVARFF 1220
L ++ R+
Sbjct: 806 LGESLERWI 814
>gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 1431
Score = 302 bits (774), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 218/617 (35%), Positives = 310/617 (50%), Gaps = 105/617 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E++ K AEAA+VAKS+FLA +SHEIRTP+NGVLGM ++L+ T L A Q +T
Sbjct: 752 QELVSAKEAAEAANVAKSRFLANMSHEIRTPLNGVLGMTELLLSTSLSAKQQSLLETVRR 811
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
SG L+ +IND+LD +KIE+G+LE E V F L V++ + LF+ A K +EL ++
Sbjct: 812 SGVALLEVINDILDFSKIEAGKLELEQVEFGLRQVVEEAVELFAGSAGNKKLELTYFIPA 871
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VP+ ++GD R RQI+ NL+GN+IKFT +G + V+ LA+
Sbjct: 872 DVPDSLVGDAVRLRQILLNLIGNAIKFTA-QGEVTVAFALAE------------------ 912
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
QH +TL+ L V DTG+GIP A
Sbjct: 913 --QHA-----DTLT------------------------------LACRVRDTGIGIPDAA 935
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q ++FT F QAD ST+R +GGTG+GL+I + LV+LMGGE+G VS PG G+TFSFT T T
Sbjct: 936 QAQLFTAFTQADGSTTRRFGGTGLGLAIVKQLVQLMGGEVGLVSAPGQGTTFSFTFTVTR 995
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
G ++ P + G + L++DD E+ HLQ V A S A
Sbjct: 996 GSAHAAYPPLAE-----RHLAGRQILIVDDMRTNLEILATHLQSWGATVFTAESADDALL 1050
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
L Q+ + ++D + ++ G+ L +K+Q +NLP I L +S
Sbjct: 1051 QLEHFRHKQ--QQIDMAILDLRMPGRD-GVDLARSIKEQ------AAYQNLPLIAL--SS 1099
Query: 1026 ISE-TDRDELKSDGIVTLLTKPLRLSVLIGCFQED--------PESSKKLQQKRKKPSLG 1076
+ +D ++ + L KP+R S+L C P S + R +
Sbjct: 1100 VERLSDESDVTHRLFHSFLRKPVRQSLLRDCLTRALGGSAGPVPHSPEFAATPRPRVD-- 1157
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
+IL+ +DN VN+ VA L+ G +T GRAAV+ T FD MD QM
Sbjct: 1158 -----ARILLAEDNPVNQDVASSMLEMLGCRITIAPNGRAAVEAAT-TGRFDLILMDCQM 1211
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PEMDGF AT IR E ++ HVPI+A+TA+ ++ +C+
Sbjct: 1212 PEMDGFTATAAIRRQEATATDR----------------RHVPIIALTANAMEGDRARCLA 1255
Query: 1197 CGMDDYVSKPFEDEQLY 1213
GMDDY++KPF QLY
Sbjct: 1256 AGMDDYLTKPFTVAQLY 1272
>gi|451820687|ref|YP_007456888.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451786666|gb|AGF57634.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 949
Score = 302 bits (773), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 207/616 (33%), Positives = 317/616 (51%), Gaps = 99/616 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+++ K +AEAA+VAKSQFLA +SHEIRTPMNG+ G L++L TEL Q ++ + A ++
Sbjct: 312 ELLKAKEQAEAANVAKSQFLANMSHEIRTPMNGIFGFLELLQTTELSLEQEEFIREAKSA 371
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+ +IND+LD +KIE+ +L E + F+L +++ +SL S KA +KG+E+ + + D
Sbjct: 372 SEILLYIINDILDFSKIEAKKLVMESIKFNLRTTIEDAVSLLSHKAVEKGLEIYVMIKDG 431
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VPE VIGDP R RQI+ NL+ N++KFT+ + D+ VD ++K
Sbjct: 432 VPEEVIGDPSRIRQILNNLISNAVKFTE-----------SGDISVSVDYEEK-------- 472
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
EN D N L V+DTG+GI E
Sbjct: 473 ------------------------EN----DMAN---------LYFEVKDTGIGIRKEDI 495
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
++F F QAD+ST+R YGGTG+GL+IS LV++M GE+ SE G GSTF F V
Sbjct: 496 HKLFQSFNQADASTTRKYGGTGLGLAISSELVKMMDGEMNVESEFGKGSTFKFNVNLKIA 555
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+R+S +PK+ D+ + +G+ LV+D E + + H A+
Sbjct: 556 KRSS-EPKF-----DLEKLKGVNILVVDGNDNNRESIKSYF-------HGADINLFEAKD 602
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
D +T + + ID + D + + Y L + + I++++ K+ LL +S
Sbjct: 603 AGDAITTVIKNSNSKNKIDVAIVDYRMSDMTAYELATTLK--SIPIAKDI-KLILLTSSA 659
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGC------FQEDPESSKKLQQKRKKPSLGHLLK 1080
D K G + L+KP+R LI C +ED E +++ K + H LK
Sbjct: 660 KIVDSKAAKEYGFSSYLSKPIRKDDLISCIAILLGLEEDHEEEQEVVIKHTVKEIKHSLK 719
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
K IL+V+DN +NR++ G LK G AV K ++D FMD QMP MD
Sbjct: 720 PK-ILLVEDNEINRKIVIGILKSREMTCDIAVNGSEAV-KAVLERDYDVVFMDCQMPVMD 777
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G+++T +IR LE E H I+AMTA+ ++ +E+C++ GMD
Sbjct: 778 GYESTARIRELEGEKK-------------------HTTIIAMTANAMEGDSEKCIQAGMD 818
Query: 1201 DYVSKPFEDEQLYTAV 1216
Y+SKP E +++ +
Sbjct: 819 YYISKPINFELMFSMI 834
>gi|345302947|ref|YP_004824849.1| histidine kinase [Rhodothermus marinus SG0.5JP17-172]
gi|345112180|gb|AEN73012.1| histidine kinase [Rhodothermus marinus SG0.5JP17-172]
Length = 1346
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 219/707 (30%), Positives = 337/707 (47%), Gaps = 140/707 (19%)
Query: 561 CRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQ--------VENDYHEMMELK 612
RF+ PP TA A++ V ++ LLVG I I RI Q V+ E+ K
Sbjct: 726 ARFEITPPFWQTAWFAALMVTLLGLLVGGIHRYRIYRIEQQKEQLEALVQERTAELQAQK 785
Query: 613 ARAEA---------------------ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
+ EA A KS+FLA +SHEIRTPMNGVLGM ++L++ +
Sbjct: 786 RQLEATLEDLRRTKEELERANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELLLEMD 845
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
L Q + + H SG+ L++++ND+LD +KIE+GRLE E + F+L + +++V++LF+ +
Sbjct: 846 LTKEQRECVEIIHRSGETLLTILNDILDFSKIEAGRLELENIDFNLQETIEDVITLFAPR 905
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
A K +EL +V +R EV GDP R RQ+++NL+GN+IKFT+ +G +
Sbjct: 906 AAAKQLELICFVEERALEVQ-GDPHRLRQVLSNLIGNAIKFTE-RGEV------------ 951
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
V+E L + + R
Sbjct: 952 -------VVEAELERLDER------------------------------------RAHWR 968
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
++V DTG+GIP + +F PF Q D ST+R YGGTG+GL+IS+ LVE+MGG IG SE
Sbjct: 969 ISVRDTGIGIPPDRLAHLFQPFTQLDGSTTRRYGGTGLGLAISKQLVEMMGGTIGVESEV 1028
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G GSTF+ + F + L+ ++ + + +R L++DD E+ R
Sbjct: 1029 GKGSTFTVRIPFRLSSQRKLNGDERRAL-----LKDVRVLIVDDNEANREILRRQTLGWG 1083
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGL 1010
M +A S A + +LA++ D+ E+ G++L +KQ
Sbjct: 1084 MVPTLARSGAEALEMMRAAARQGHPFELAIL----DLMMPEMDGIMLAREIKQDPSLA-- 1137
Query: 1011 EISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF-------------- 1056
+ P+I L + + D + +L+KP R S L
Sbjct: 1138 ----DTPRILLSSYLFTREDHRAMDETLFAAVLSKPTRQSYLFNTLVRVLQESRPVVAAK 1193
Query: 1057 ---QEDPESSKKLQQKRKKPSLGHLLKGK-QILVVDDNMVNRRVAEGALKKHGAIVTCVD 1112
Q+D ES+ PS G+ +L+ +DN VN++VA L++ G V
Sbjct: 1194 QQAQQD-ESAATPSDSSATPSSTPRPAGRGHLLLAEDNPVNQKVALYHLERLGYTCDVVG 1252
Query: 1113 CGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNV 1172
G+ AV+ +DA MD+ MP MDGF+AT QIR E E+
Sbjct: 1253 DGKQAVEAAL-RGGYDAILMDVHMPVMDGFEATAQIREREAELGR--------------- 1296
Query: 1173 GLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
H PI+AMTA+ ++ E+C++ GMDDY++KPF+ ++L T + R+
Sbjct: 1297 ---HTPIIAMTANALRGERERCLEAGMDDYIAKPFKKDELKTVLERW 1340
>gi|358347444|ref|XP_003637767.1| Histidine kinase [Medicago truncatula]
gi|355503702|gb|AES84905.1| Histidine kinase [Medicago truncatula]
Length = 397
Score = 300 bits (768), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 163/341 (47%), Positives = 207/341 (60%), Gaps = 79/341 (23%)
Query: 404 DPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHL 463
+ +PV+DEYAPVIF EDRENI+RARA+GK V+T PF+LL S+HL
Sbjct: 134 EASPVRDEYAPVIF-----------------EDRENIMRARATGKAVMTSPFRLLGSHHL 176
Query: 464 GVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDT 523
GVVLTF VY + P + T E+ I+AT G + NVYD
Sbjct: 177 GVVLTFPVYKSKFPPNPTTEELIKATAG-------------------------ISNVYDV 211
Query: 524 TNASAPINMYGPDVT--DTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVV 581
TN++ P+ MYG D L+ S LDFGDP RKH+M CR+ QK P WTA++ +I
Sbjct: 212 TNSTDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPPNWTALSTAILFF 271
Query: 582 VITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVL 641
VI LL+G+I + A N I +VE+D+HEM ELK RAEAADVAKSQFLATVSHEIRTPMNG+L
Sbjct: 272 VILLLIGYILYGAGNYIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGIL 331
Query: 642 GMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVL 701
VLD+AKIE+G+LE E VPF L +L
Sbjct: 332 -----------------------------------VLDRAKIEAGKLELEAVPFDLRSIL 356
Query: 702 DNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
D+VLSLFS K+ KG+ELA++VSD+VP++V+GDPG+ +I
Sbjct: 357 DDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGKDNIVI 397
>gi|451947711|ref|YP_007468306.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451907059|gb|AGF78653.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 714
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 206/637 (32%), Positives = 312/637 (48%), Gaps = 113/637 (17%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
++E E+ + K AE+A VAKS+FLA++SHEIRTPMNGV+G +ML+ TELD Q D
Sbjct: 175 EIELQTKELRKAKVAAESASVAKSEFLASMSHEIRTPMNGVIGFTEMLLQTELDEEQRDS 234
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
A+T SG+ L+ LIND+LD +K+E+G++ E++ F +V L + + K IE+
Sbjct: 235 AETIKRSGEALLGLINDILDFSKVEAGQMSLEYIDFDPEITAHDVCELVRPRVSGKPIEV 294
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+ D +P V GDPGRFRQ++ NL+GNS KFT+ KG + ++++
Sbjct: 295 LCKIDDNLPANVCGDPGRFRQVLLNLLGNSAKFTE-KGELELTIN--------------- 338
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
V+ + DK IKL + DTG+
Sbjct: 339 -------VEEEDDK---------------------------------NIKLHALIRDTGI 358
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GI IF F Q D +T+R YGGTG+GLSI R + LM G + S G GSTF F
Sbjct: 359 GIDSSKCESIFEAFKQEDGTTTRKYGGTGLGLSICRKIASLMDGRVWVESTKGKGSTFHF 418
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
T + + Q + G R L++DD + E+ VH+ N+
Sbjct: 419 TAMMRKSSISRAKTLKQL------DLEGTRMLIVDDNAANNEIL----------VHLLNN 462
Query: 960 MQLACSYLSDTCSTSVLPQLAL---VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
+ + L D T + A D + D ++ + + L + R+ L+ SR++
Sbjct: 463 AGIKTTALLDETQTMATLKEAEECGAPFDLAIIDLQMPTITGFELARIIRESNLK-SRDI 521
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLI---------GCFQEDPESSKKL- 1066
P FL TS +E + K G L KP R ++L+ G + DP + KKL
Sbjct: 522 P--FLAYTSSTEKIAKKCKDAGFTAFLNKPARRAILLRTLSRTLGTGGDEIDPAAEKKLV 579
Query: 1067 QQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP-PH 1125
Q + + ++ IL+V+DN+VN+++A L K G V G+ AVD + P
Sbjct: 580 TQYSVREEIKQSIR---ILLVEDNLVNQKLASMILTKAGYNVEVAANGKIAVDMFSSTPD 636
Query: 1126 NFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTAD 1185
FD MD+QMPEMDG++AT QIR L G +PILAMTA+
Sbjct: 637 LFDTILMDVQMPEMDGYEATRQIRKL---------------------GYTSIPILAMTAN 675
Query: 1186 VIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
++ E C++ GM+DY++KP + + ++ + ++ S
Sbjct: 676 AMKGDRELCLEAGMNDYITKPIKRDIVFNMLDKWLNS 712
>gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 1442
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 207/654 (31%), Positives = 318/654 (48%), Gaps = 133/654 (20%)
Query: 590 IFHAAINRIAQ-VENDYHE--MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQM 646
I A N IA+ +E E + + K AE+A+ AKS FLA +SHEIRTPMNG+LG L++
Sbjct: 784 ILKAFSNSIAEAIERSQMEQKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLEL 843
Query: 647 LMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLS 706
L +TEL Q DY Q AH + + L+ LIND+LD +KIE+G+L E +PF + V+++ +S
Sbjct: 844 LGETELSTEQQDYVQEAHRASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTVVEDAVS 903
Query: 707 LFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766
L + KA +KG+E+ + VP+ V+GDP R RQI+ NL+ N++KFT G I V V
Sbjct: 904 LQAPKAREKGLEMHTLIKSNVPDEVVGDPARLRQILNNLLSNAVKFTH-TGEILVIVE-- 960
Query: 767 DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG 826
++ SDK
Sbjct: 961 -------------------TINESSDKA-------------------------------- 969
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
++ V D+G+GI E ++F PF QAD+ST+R YGGTG+GL+IS LV LM G +
Sbjct: 970 --EIAFEVSDSGIGIAPEDMEKLFQPFTQADASTTRKYGGTGLGLAISYELVRLMEGTMQ 1027
Query: 887 FVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH 946
S+ G GS F FT F G R P + P +E +G R L++DD S ++ R +
Sbjct: 1028 VKSKLGQGSKFYFTACFKPGLRKDTLP----FEP--AELKGARVLIVDDNSSNRKIIRTY 1081
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
L+ + V ++S + A + L S S + +V++D Q
Sbjct: 1082 LEDAQCLVEESDSAEKAITIL---LSASAVKSFDVVIVD----------------FQMPA 1122
Query: 1007 KGGLEISRNLPKI--------FLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058
G E++ L I +L ++ + D K G LTKP++ L+ C
Sbjct: 1123 MNGHELAAALKAIPSTRAIHLIMLTSAAQKGDARRAKEHGFSGYLTKPVKRDELLQCIS- 1181
Query: 1059 DPESSKKLQQKRKKPSLGHLLKGK------------QILVVDDNMVNRRVAEGALKKHGA 1106
+ + + SLG + + + L+V+DN +N+++ L+K G
Sbjct: 1182 ------IVLGLKTEASLGDSIVTRYTIKENPIPARPRFLLVEDNEMNQKIIVKMLEKRG- 1234
Query: 1107 IVTC-VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESS 1165
+ C + C A K ++D FMD QMPEMDG++ T +IR +E E
Sbjct: 1235 -MYCDLACSGAEALKALQQKDYDIVFMDCQMPEMDGYETTARIRQMEGEER--------- 1284
Query: 1166 AEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
H I+AMTA+ ++ E+C++ GMDDY+SKP + + L+ + ++
Sbjct: 1285 ----------HTIIVAMTANAMEGDREKCLQAGMDDYISKPVDFQLLFNIIEQY 1328
>gi|344940937|ref|ZP_08780225.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344262129|gb|EGW22400.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 966
Score = 299 bits (766), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 211/632 (33%), Positives = 318/632 (50%), Gaps = 115/632 (18%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+V N E+ E + +A AAD +KS+FL+ +SHEIRTPMN ++GM ++ + T+L A Q DY
Sbjct: 280 KVINRTSELAEARDQAIAADKSKSEFLSMMSHEIRTPMNAIIGMTRLALQTDLTAKQQDY 339
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
S + L+ +IND+LD +KIE+G+LE E + F+L DVL+++ SL S KA +KG+++
Sbjct: 340 LTKVQISSRALLGIINDILDFSKIEAGKLELETIAFNLDDVLNDLFSLMSGKAEEKGLKI 399
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+D VP +IGDP R Q++ NLV N++KFT G + + V LA+
Sbjct: 400 RFITADDVPSDLIGDPLRLGQVLLNLVNNAVKFTSRGGDVDIKVALAE------------ 447
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
E K D +I+L +V+DTG+
Sbjct: 448 -----------------------------GAEQVKSAD---------QIRLEFSVKDTGI 469
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
G+ E +F F QAD ST+R YGGTG+GL+I + +V++MGG I SE G GSTF F
Sbjct: 470 GLTTEQIGGLFQSFNQADKSTTRKYGGTGLGLAICKRMVDMMGGVITVNSEIGQGSTFIF 529
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
T F + S Q+Y FRG++ALV+D HL+ L V ++
Sbjct: 530 TAIFEQPYEVS-----QKYSASHDAFRGVKALVVDSDETSRNALCLHLKSLFFQVTSVST 584
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPK 1018
+ A L + C+ LVL+D ++ + I + H K LEI+ +P
Sbjct: 585 GEQAIQLLENACAED---PYRLVLMDWNLPKMDGISVARHI-------KNSLEIA-CIPH 633
Query: 1019 IFLLATSISE-----TDRDELKSDGIVTLLTKPLRLSVLIGC---------FQEDPESSK 1064
I ++ T E +L DG L KP+ S L F E P S
Sbjct: 634 IIIVTTHSREDVVHVQRSKDLNLDG---FLAKPVHASALFSAVVEAFNQTDFDEYPPS-- 688
Query: 1065 KLQQKRKKPSLG----HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
+ ++P G H +KG ++L+V+DN +N+++A+ L++ G V+ GR AV K
Sbjct: 689 ----QVRRPGTGNEKLHQIKGAKLLLVEDNHINQQIAKETLEQEGFEVSIASDGRDAVQK 744
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
+ + FDA MDL+MP MDG++AT IR S F + +PI+
Sbjct: 745 IRTCY-FDAVLMDLEMPIMDGYEATRIIR---------------SEAQFSD-----LPII 783
Query: 1181 AMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
AMTA + E+C+ GM+ YV+KP + ++L
Sbjct: 784 AMTAHAMNDVREKCLHIGMNGYVTKPIDVDEL 815
>gi|392424053|ref|YP_006465047.1| PAS domain S-box [Desulfosporosinus acidiphilus SJ4]
gi|391354016|gb|AFM39715.1| PAS domain S-box [Desulfosporosinus acidiphilus SJ4]
Length = 1367
Score = 299 bits (766), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 205/616 (33%), Positives = 312/616 (50%), Gaps = 100/616 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ K AEAA+ AKSQFLA +SHEIRTPMNG+ G L++L ++L Q +Y + +S
Sbjct: 843 ELQASKRAAEAANQAKSQFLANMSHEIRTPMNGIFGFLELLNHSQLSQVQREYIREVKSS 902
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+ LIND+LD +KIESG+L E + F+L +++ +SLF A +K +EL +
Sbjct: 903 SETLLHLINDILDLSKIESGKLTLENLNFNLRTTIEDAMSLFVPTAYEKHLELYTQIKAN 962
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP+ V GDP R +QI++NL+ N++KFT++ G + + V +
Sbjct: 963 VPDEVSGDPSRLKQILSNLISNALKFTEN-GEVSIVVE---------------------T 1000
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V+ K+ GF + R++ V DTG+GIP E
Sbjct: 1001 VEEKN--------GFATI-RFE-------------------------VRDTGIGIPKEDT 1026
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
RIF PF QAD+ST+R YGGTG+GL+I++ LV +M G IG S PG GSTF FT F
Sbjct: 1027 KRIFRPFDQADASTTRKYGGTGLGLAITKELVTIMKGTIGVDSVPGQGSTFYFTAKFKIL 1086
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+ ++ K+ VS + ++DD + R +L+ V A S A S
Sbjct: 1087 NKKAVCDKY------VS-LNNVNVFIVDDNDNNRRIVRSYLEDAGCKVMEAKSSDKALST 1139
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
+ + + S ++ LVL+D + G L L + +++L ++ LL +S
Sbjct: 1140 ILNN-AYSENNKIQLVLVDYHMPGIN-GFDLATALNM------IPATKDL-RLILLTSSA 1190
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGC------FQEDPESSKKLQQKRKKPSLGHLLK 1080
D + G LTKP+R L+ C + DPE+S+++ K +LK
Sbjct: 1191 QMGDAGRARELGFSGYLTKPVRRDELLNCMSIVLGLERDPENSREIVTKYTHNENQSVLK 1250
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
K +L+V+DN VNR+V LK G G+ A + + ++D FMD QMP MD
Sbjct: 1251 PK-LLLVEDNEVNRKVVLATLKSRGMTCDVAMDGQEAYEVMLKK-DYDLVFMDCQMPVMD 1308
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G++AT +IR E G H I+AMTA+ + E+C++ GMD
Sbjct: 1309 GYEATKKIREAE--------------------GSKHTKIIAMTANAMMGDKEKCLEAGMD 1348
Query: 1201 DYVSKPFEDEQLYTAV 1216
DY+SKP + E+++ +
Sbjct: 1349 DYISKPIDFEEMFKII 1364
>gi|24372448|ref|NP_716490.1| two component signal transduction system hybrid histidine
kinase/response regulator with PAS sensory domain
[Shewanella oneidensis MR-1]
gi|24346431|gb|AAN53935.1| two component signal transduction system hybrid histidine
kinase/response regulator with PAS sensory domain
[Shewanella oneidensis MR-1]
Length = 1765
Score = 298 bits (764), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 202/618 (32%), Positives = 313/618 (50%), Gaps = 105/618 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K A+AA AK FLA +SHEIRTPMN ++GM Q+ + T+LD Q +Y + +
Sbjct: 1025 ELLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKNYLEKIERA 1084
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+S+IND+LD +KIE+G+L+ E V F L +L+++ +FS +A QK IEL V+
Sbjct: 1085 SQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPN 1144
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP ++GDP R Q++ NL+ N+IKFT+ +G + +S+ L
Sbjct: 1145 VPRHLLGDPLRLGQVLINLMNNAIKFTE-RGEVLLSLSL--------------------- 1182
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V+ ++D V L +V D+G+G+ E Q
Sbjct: 1183 VEQQNDDVV----------------------------------LRFSVRDSGIGLTQEQQ 1208
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
++F F QAD+ST+R YGGTG+GL+IS+ LVELMGG IG S+ G GSTF FTV
Sbjct: 1209 SKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFFTVKLCIS 1268
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
L +V E G+ LV DD + ++ R L+ + V S A
Sbjct: 1269 SGQKL------FVG--QELDGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIM- 1319
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
CS + A+ LID + + + G+ +KQQ ++N P+I +++
Sbjct: 1320 ---RCSQQ---EYAVALIDWKMPNLD-GIETAKQIKQQ--------TKNAPRILMVSAHA 1364
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK----PSLGHLLKGK 1082
++ +++ G+ ++KP+ S L+ S L +R + P L LKGK
Sbjct: 1365 NQDFLTQIEQLGLAGYISKPISASRLLDGIMNALGRSGILPVRRHQDNIAPELLLPLKGK 1424
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+IL+V+DN +N VA L++ G I++ G+ A+DKL +FD MD QMP MDG+
Sbjct: 1425 RILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLA-QQSFDLVLMDCQMPVMDGY 1483
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
QAT IR L +P++AMTA+ + E C++ GM+D+
Sbjct: 1484 QATKAIRQRPE--------------------LAQLPVIAMTANAMAGDKEMCLRAGMNDH 1523
Query: 1203 VSKPFEDEQLYTAVARFF 1220
++KP E LY + ++
Sbjct: 1524 IAKPIEVNLLYQTLLKYL 1541
>gi|372487459|ref|YP_005027024.1| PAS domain S-box [Dechlorosoma suillum PS]
gi|359354012|gb|AEV25183.1| PAS domain S-box [Dechlorosoma suillum PS]
Length = 1306
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 212/622 (34%), Positives = 310/622 (49%), Gaps = 103/622 (16%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ +A AE A AKS FLA +SHEIRTPMN ++GM + M TEL Q DY HN
Sbjct: 563 EELRRARATAEEATEAKSLFLANMSHEIRTPMNAIIGMAHLAMKTELTPKQRDYVGKIHN 622
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
+ L+ +IND+LD +KIE+G+L E+VPF L DVLDNV L KAN+KG+EL V+
Sbjct: 623 AAISLLGIINDILDFSKIEAGKLSLEYVPFSLEDVLDNVSGLLGLKANEKGLELLFNVNA 682
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
P ++GDP R QI+TNLV N+IKFT+ +G I
Sbjct: 683 GTPAGLVGDPLRLNQILTNLVSNAIKFTE-RGQI-------------------------- 715
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG-RIKLLVTVEDTGVGIPLE 844
TL+ PV +Q G R+KL +ED G+G+ E
Sbjct: 716 -----------TLTTRPV-------------------DQAGDRVKLQFWIEDMGIGMSRE 745
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
+ +F F QAD ST+R YGGTG+GLSISR LVE+MGG I S G GSTF FT F
Sbjct: 746 QLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVEMMGGTIWADSTLGEGSTFCFTAWFG 805
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
E + P+ +P + GLR LV DD E+ L+ L++ + S A
Sbjct: 806 RAEELA-RPR---TLP--ASLAGLRVLVADDNGAAREILGEALRHLDLRPDLVASGAEAL 859
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
+ L++ + ++ +D + D + G+ + L+Q + P++ ++
Sbjct: 860 AQLTEMQGGA--DPYRVLFLDWQMPDLD-GVSTLHKLQQALPQA------QWPRVVMVTA 910
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLK 1080
E R + ++ GI +L KP+ S VL+ D + L + +
Sbjct: 911 YDQEELRRQTENLGICGILVKPVSASTLFDVLVSLVDADNAPATPLHIAAPQTR----ID 966
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFDACFMDLQMPE 1138
G +IL+ +DN +N+++A L+ GA VT G AV+ L +P +FD MDLQMP
Sbjct: 967 GMRILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQMPH 1026
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
+DG+ AT ++R ++ A H+PILAMTA + E+C+ G
Sbjct: 1027 LDGYDATERLR-----CQQRFA---------------HLPILAMTAHAMPEERERCLAIG 1066
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
M+D+++KP + L +AR++
Sbjct: 1067 MNDHLAKPIDPTALAATLARWY 1088
>gi|298528353|ref|ZP_07015757.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512005|gb|EFI35907.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1437
Score = 298 bits (762), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 219/656 (33%), Positives = 332/656 (50%), Gaps = 95/656 (14%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + AE A AKS+FLA +SHEIRTPMNGV+GM +L+DT+LD+ Q YA+T +S
Sbjct: 684 ELDAARINAEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDTDLDSEQQHYARTVRSS 743
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+++IND+LD +KIE+GRL+ E V F L +L + + + KA +KG+EL +
Sbjct: 744 AESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMDPN 803
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP +V GD GR RQI+ NLVGN++KFT+ G + + V S++ V D+ E
Sbjct: 804 VPSMVRGDSGRLRQILMNLVGNAVKFTE-HGEVEIKV-------SRM-VNDEC-ENPNAE 853
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q S +Y S F T L + +V DTG+GIP + Q
Sbjct: 854 TQENSHDLYR--SSF-----------------TTQHSCL----MHFSVRDTGIGIPEDKQ 890
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+F F Q D+ST+R +GGTG+GL+ISR L E+MGG G S G GSTF FTV
Sbjct: 891 DSLFESFSQVDASTTRKFGGTGLGLAISRQLAEIMGGTAGLESVEGRGSTFWFTV----- 945
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
R + + QQ P + +G+R L++DD S E R L M A + A S
Sbjct: 946 -RLGIQHEQQQERPAPACLQGVRTLIVDDNSTNRETLRVRLGSWGMRSEEAANGSTALSM 1004
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
L + + ++A++ + D E + + + G L+ +R + +++++
Sbjct: 1005 LHQAKADNDPFEVAVLDMQMPDMDGET------LGRNIKEDGQLKDTR----LIMMSSAT 1054
Query: 1027 SET-DRDELKSDGIVTLLTKPLRLSVLIGCFQED----------PESSKKLQQKRKKPSL 1075
+T D L G +++ KP+ S L C ++ E +++ + + P
Sbjct: 1055 GQTGDAKRLHEAGFDSIMNKPVLPSELYACLEKILAKTDTADLVAEHAEREETPKGYPDF 1114
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFDACFMD 1133
+ILV +DNMVN++VA G LKK G V GR + L P +D MD
Sbjct: 1115 SG--TKARILVAEDNMVNQQVALGILKKMGLRADAVANGREVLHALQNIP---YDLVLMD 1169
Query: 1134 LQMPEMDGFQATWQIRHLE------------NEINEQIASGE-----------SSAEMFG 1170
+QMPEMDG +AT +IR E +E+++Q E SS
Sbjct: 1170 VQMPEMDGLKATRRIRASEVRGQKSEIRSQKSEVSDQRLESESQNSSIPESPNSSTPKSP 1229
Query: 1171 NVGLWH-----VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221
N + +PI+AMTA +Q E+C++ GMDDY +KP ++L + ++ +
Sbjct: 1230 NSSIPESQNPRIPIIAMTAGAMQEDRERCIEAGMDDYTAKPVNPDELARVLEKWLL 1285
>gi|389875458|ref|YP_006373193.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
gi|388530413|gb|AFK55609.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
Length = 1592
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 217/628 (34%), Positives = 311/628 (49%), Gaps = 71/628 (11%)
Query: 599 AQVENDYHEMMEL-------KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
AQ+E E+ L K AE A AKS FLA +SHEIRTPMNGV+GM Q+L+ T
Sbjct: 872 AQLERQASELASLATALERAKVMAETASQAKSDFLANMSHEIRTPMNGVMGMTQILLGTP 931
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
LD Q YA+T +S + L+ +I+D+LD +K+E+ R+E E +PF L +LD V ++ + +
Sbjct: 932 LDDEQRGYAETVRDSAEALLVVIDDILDISKLEADRVELEHLPFDLTGLLDGVAAILAPR 991
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
A KGIE+A +GDP R RQI+ NL GN++KFT+ +GH+ V+V V
Sbjct: 992 ARDKGIEIACMAEPDTGTGWLGDPTRLRQILLNLAGNAVKFTE-RGHVAVTVRDLGPVAC 1050
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
+ D +D V ++S + SG D T + +LL
Sbjct: 1051 E-DCED---------VGNESGEDCEGRSGGA--------------DRPGTDHR----RLL 1082
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
V DTG+G+ + ++F F QAD+S +R +GG+G+GL I LVELMGG I SEP
Sbjct: 1083 FEVRDTGIGMSADQTAKLFHKFAQADASITRRFGGSGLGLVICLKLVELMGGTISVDSEP 1142
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G GS F F V ER +L + + RG RAL++DD + V +HL L
Sbjct: 1143 GRGSVFRFEVPL---ERTTLPAPPEGGEGLEAGLRGRRALIVDDLPLNRRVLAHHLGELG 1199
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
M + A + + L T + LV+ D ++ + G +L L+ R +
Sbjct: 1200 MEISEATDVAESLHLLEKAAQTGT--PVDLVVTDLNLGGMD-GAILGTWLRLHPR---FQ 1253
Query: 1012 ISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
R +LA S + D ++ TKP+R LI S +
Sbjct: 1254 TVRT-----ILAASSPPSAEAARVFDAVI---TKPIRRGELITALARSFGLSPPPAASAE 1305
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
P L G+++L+V+DN VN+ VA L+K G V V+ G A++ +FD F
Sbjct: 1306 APPSAPLTAGRRVLLVEDNTVNQAVASTILEKQGYRVAVVENGAEAIEACR-ADDFDLVF 1364
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP MDG +AT +IR E E G PI+AMTA+ +
Sbjct: 1365 MDVQMPVMDGMEATRRIRTAEAE-----------------SGRPRTPIVAMTANAMAGMR 1407
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ M GMDD+V KPF E+L AR+
Sbjct: 1408 EEYMAAGMDDFVPKPFRAEKLLAMAARW 1435
>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1175
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 217/677 (32%), Positives = 334/677 (49%), Gaps = 113/677 (16%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
++++ K AE A AKS FLA +SHEIRTPMNGV+GM +L+DT+LD+ Q YA+T +
Sbjct: 385 QDLIQAKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLLDTDLDSEQQHYARTVRS 444
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S + L+++IND+LD +KIE+GRL+ E V F L +L + + + KA +KG+EL +
Sbjct: 445 SAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMDP 504
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VP +V GD GR RQI+ NLVGN++KFT+ G + + V ++ VD + +V ++ N
Sbjct: 505 NVPSMVRGDSGRLRQILMNLVGNAVKFTE-HGEVEIRVSKSE----VVDQRSEVSDQPAN 559
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
+ H+ + + +V+ L + DTG+GIP +
Sbjct: 560 RLSHEQTGIKDQYGDSRIVE------------------------LCFQIRDTGIGIPQDK 595
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q +F F Q D+ST+R +GGTG+GL+ISR L E+MGG G S GSTF FTV
Sbjct: 596 QDSLFESFSQVDASTTRKFGGTGLGLAISRQLAEMMGGTAGLESVEDQGSTFWFTV---- 651
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
R + + QQ P + +G+R L++DD S E+ R M A + A S
Sbjct: 652 --RLGVQDEQQQERPVPACLQGVRTLIVDDNSTNREILRVRFGSWGMRPGEAANGSAALS 709
Query: 966 YLSDTCSTS---VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
L + + VL L + + D D G L +K+ G L+ +R + ++
Sbjct: 710 MLHQAKAENDPFVLAVLDMQMPDMD------GETLGRNIKED---GQLKDTR----LIMM 756
Query: 1023 ATSISET-DRDELKSDGIVTLLTKPLRLSVLIGCFQE--------DPESSKKLQQKRKKP 1073
+++ +T D L G ++L KP+ S L ++ D + +K ++
Sbjct: 757 SSATGQTGDSRRLHETGFDSILNKPVLPSELYASLEKILARTGAADLPAGHTEPEKIRQG 816
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFDACF 1131
+ILV +DNMVN++VA G LKK G V G+ A+ L P +D
Sbjct: 817 YPDFSGTKARILVAEDNMVNQQVALGILKKMGLRADAVANGQEALHALENIP---YDLVL 873
Query: 1132 MDLQMPEMDGFQATWQIRHLE-----------------------------------NEIN 1156
MD+QMPEM G +AT +IR +E +E+
Sbjct: 874 MDVQMPEMGGLEATRRIRSMEHGTPVKPLSTTGSPLGCFTGQAGGMEHGAEDKGQRSEVR 933
Query: 1157 EQIASGES-----------SAEMFGNVGL--WHVPILAMTADVIQASNEQCMKCGMDDYV 1203
+Q ES S F N + + +PI+AMTA +Q E+C++ GMDDY
Sbjct: 934 DQRLESESQNTSVPESLNPSIPQFLNSSIPEFRIPIIAMTAGAMQEDRERCIEAGMDDYT 993
Query: 1204 SKPFEDEQLYTAVARFF 1220
+KP ++L + ++
Sbjct: 994 AKPVNPDELARVLEKWL 1010
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 29/141 (20%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV----DKLTPPHNFDACFMDLQMPEM 1139
ILVVDD R + + L+ +V G A+ DK+ D +D+ MP+M
Sbjct: 9 ILVVDDTQTIRHITKKTLEADNYVVLAASNGPEALSIAADKIP-----DLILLDVMMPDM 63
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DGF+ +++ ++ +P++ +TA + + + G
Sbjct: 64 DGFEVCSRLK--------------------ADICTRDIPVVFITASGNKEHEVKGLDLGA 103
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D+V KPF + L V +
Sbjct: 104 EDFVHKPFHEGVLLARVGQIL 124
>gi|149177515|ref|ZP_01856118.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
gi|148843665|gb|EDL58025.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
Length = 1129
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 212/621 (34%), Positives = 301/621 (48%), Gaps = 89/621 (14%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ + K AE A A+ +FLA VSHE+RTPMN +LGML++ + L + DY QTA +
Sbjct: 439 EELSKAKDEAEQATRAQGEFLANVSHELRTPMNAILGMLELTLQENLTPLKRDYLQTAKD 498
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+ L+ND+LD +++E+G E E VPF L ++D + S +A +KG+EL +
Sbjct: 499 SADSLLLLVNDILDFSRLEAGHFELEPVPFSLRVMIDEAVKTLSLRACEKGLELICRIDK 558
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
RVP V+GDP R RQI+TNL GN+IKFT+ +G + V V L + + + EK+L
Sbjct: 559 RVPSQVLGDPVRLRQILTNLAGNAIKFTE-QGEVVVDVKLIEPAGEIPLPRLQPGEKAL- 616
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
L +V DTG+GI +E
Sbjct: 617 --------------------------------------------LEFSVSDTGIGIAVED 632
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q RIF PF QAD+ST+R Y GTG+GL+I L+ LM GE+ SEPG GS FSF V
Sbjct: 633 QKRIFAPFAQADASTTRHYSGTGLGLAICHELIGLMDGEMYLTSEPGEGSCFSFQVILPV 692
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
E + VSE R L LV+DD + L M+ +S + A
Sbjct: 693 AEPE--ESVQGNEKASVSELRDLPVLVVDDNQTNRVILEEMLTNWSMSPTPVDSAREALD 750
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
LS LV++D + + + +ML +Q R+ GL S I +L+++
Sbjct: 751 QLSALSEKE--KSYPLVIVDALMPETD-----GFMLLEQAREEGLLDSAT---ILMLSSA 800
Query: 1026 ISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ---EDP--ESSKKLQQKRKKPSLGHLLK 1080
+ + + I L KP+ S L+ + P ESS Q + K +L
Sbjct: 801 DHQIFSERCQGLDISAFLEKPVSQSDLLDAIMTALKGPQLESSSVSQIRESKQTL----- 855
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
++LV +D N++V LKK G D GR AVD L +FD MD+QMP MD
Sbjct: 856 --RVLVAEDTPANQKVINAILKKRGHQCVIADNGREAVDCLR-NESFDVVLMDVQMPTMD 912
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G QAT IR ENE + H PI+AMTA ++ ++C+ GMD
Sbjct: 913 GLQATAMIR--ENEYGSGV----------------HTPIIAMTAYAMRGDRDKCIAAGMD 954
Query: 1201 DYVSKPFEDEQLYTAVARFFM 1221
Y+SKP + ++L + R M
Sbjct: 955 SYISKPIDAKKLILILERLAM 975
>gi|445494035|ref|ZP_21461079.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
gi|444790196|gb|ELX11743.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
Length = 1016
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 199/611 (32%), Positives = 308/611 (50%), Gaps = 99/611 (16%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A KS FLA +SHEIRTPMNG++GM + + TEL Q +Y + ++ ++L+ +I
Sbjct: 272 AEDATKMKSDFLANMSHEIRTPMNGIIGMTHLALQTELSPKQRNYLEKVESAARNLLGII 331
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+G+L E V F++ DV+ N+ L +A KG+EL ++ VP+V++GD
Sbjct: 332 NDILDFSKIEAGKLAFEQVDFYVEDVMANIADLSVMRAQDKGLELLFDIAPDVPQVLVGD 391
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P RF Q++ NL N+IKFTQ +G I V++ +VLE+ +
Sbjct: 392 PLRFGQVMINLTNNAIKFTQ-QGEIVVTI--------------RVLERLPDE-------- 428
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
R++L + V DTG G+ E Q R+F F
Sbjct: 429 --------------------------------RVRLRIDVRDTGPGLTPEQQARLFQAFT 456
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD+ST+R +GGTG+GL+IS+ LVELM GEIG S+PG GSTF F+ F G P
Sbjct: 457 QADTSTTRHHGGTGLGLTISKRLVELMDGEIGLESQPGVGSTFHFSAVFGIGAVEEPLP- 515
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
+PD+S GLR LV+DD + E+ L + A A+ Q A ++ S
Sbjct: 516 ----LPDIS---GLRVLVVDDNASAREIFMGMLSSMRFAAACADGGQRAIDMVAQARSEG 568
Query: 975 VLPQLALVLIDKDVWDKE--IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
+VL+D W GL ++ Q G++ P ++ + D
Sbjct: 569 --RPFNIVLLD---WQMPGMNGLETLQAIRAQAEADGVDA----PAFIMVTAYNRDVLMD 619
Query: 1033 ELKSDGIVTLLTKPLRLSVLIG----CFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVD 1088
E + I +L KP+ S L+ F +D S ++ +++ + ++G +L+V+
Sbjct: 620 EARGIAIDAMLNKPVSSSTLLDSVSTVFGKDLRSCRRTRRRADHMAAEEAVRGAWLLLVE 679
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQI 1148
DN VN+ VA+ L G V G A+ KL ++D MD QMP MDG+ AT ++
Sbjct: 680 DNEVNQEVAQQILSDAGIRVDIAANGAMALAKLAVA-DYDGVLMDCQMPVMDGYDATRKL 738
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
R + ++P++AMTA+ + E+C+ GM+D+++KP +
Sbjct: 739 RE--------------------DARYANLPVIAMTANAMVGDKEKCLDAGMNDFIAKPID 778
Query: 1209 DEQLYTAVARF 1219
QL+T +AR+
Sbjct: 779 VAQLFTTLARW 789
>gi|182414033|ref|YP_001819099.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177841247|gb|ACB75499.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 812
Score = 296 bits (758), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 211/614 (34%), Positives = 300/614 (48%), Gaps = 109/614 (17%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+FLA +SHEIRTPMNGV+GM +L+DT+LD Q +A++ NS ++L+++IND+LD +
Sbjct: 283 KSEFLANMSHEIRTPMNGVIGMTGLLLDTKLDPEQRQFAESVRNSAENLMTVINDILDFS 342
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+L E + F L + ++ L + + +A KGIEL ++ +VP + GDPGR RQI
Sbjct: 343 KIEAGKLLFEELDFDLVETIEGTLDMLAERAQGKGIELIDGIAPQVPRYLRGDPGRLRQI 402
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+TNL+GN+IKFT+ G + +S L + + V+ F
Sbjct: 403 LTNLLGNAIKFTE-HGEVVLSTTLERETATHAIVR------------------------F 437
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
V D TG+GI + Q R+F F QADSST+
Sbjct: 438 DVTD-------------------------------TGIGISRDVQARLFQSFEQADSSTT 466
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R YGGTG+GL+IS+ LV +M GEIG SE G GSTF FTV F ++ + PK + V
Sbjct: 467 RRYGGTGLGLAISKQLVAMMHGEIGVQSEAGVGSTFWFTVEF---QKQTGAPKRVRRVQ- 522
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
+ LR LV+DD + ++ R+ + M A A + D + +AL
Sbjct: 523 -RDLTSLRVLVVDDNATNRKILRHQIFAWNMQKGSAAGGHEALRLMRDAAAAGEPYDIAL 581
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS-ETDRDELKSDGIV 1040
+ + D GL L +K P ++ TS+ RDEL++ GI
Sbjct: 582 LDMQMPEMD---GLTLARAIKDDPALA--------PTHLIILTSLGHRLTRDELQAAGID 630
Query: 1041 TLLTKPLRLSVL-------IGCFQ------EDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
L KP++ S L IG Q E P SK +P + + LV
Sbjct: 631 AYLVKPVKQSRLFDTLMDAIGVAQVFTRSYETPARSKPNAADTPEPPI------LRALVA 684
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN VN+ VA LKK V V G ++ L+ +D FMD QMPEMDG++AT
Sbjct: 685 EDNQVNQTVAAAQLKKLRCSVDVVANGLEVLEALSRA-PYDVIFMDCQMPEMDGYEATRA 743
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVP--ILAMTADVIQASNEQCMKCGMDDYVSK 1205
IR E + W P I+AMTA + E+C+ GMDDYVSK
Sbjct: 744 IRQREQDRIHPCH--------------WKAPAYIIAMTAHAMHGDREKCLAVGMDDYVSK 789
Query: 1206 PFEDEQLYTAVARF 1219
P +L A+ R+
Sbjct: 790 PMRTAELQAAIERW 803
>gi|333983217|ref|YP_004512427.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333807258|gb|AEF99927.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 926
Score = 295 bits (756), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 203/615 (33%), Positives = 300/615 (48%), Gaps = 98/615 (15%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A+AA+ AKSQFLA +SHEIRTPMNGVLGM ++L+ T L Q +A+ H SG+ L+S+I
Sbjct: 268 AQAANAAKSQFLANMSHEIRTPMNGVLGMTELLLSTSLTPEQKRFAENVHKSGESLLSII 327
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+G L+ E V F L+ +++V+ LFS +A K +EL ++ VPE VIGD
Sbjct: 328 NDILDFSKIEAGHLKLESVDFCLYQTVEDVIELFSERAYNKHLELNYRIAGDVPENVIGD 387
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P R RQI++NL+ N+IKFT +G+I V V L D + + D ++
Sbjct: 388 PTRLRQILSNLLSNAIKFTS-QGNITVDVGLTDTPNNNRIIND--------------ERA 432
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
Y + TV DTG+GI +F PF
Sbjct: 433 YG---------------------------------VRFTVSDTGIGISKGVIPNLFQPFS 459
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSST+R YGGTG+GLSI + LV +M G+I + G G+TF+ + + P
Sbjct: 460 QADSSTTRKYGGTGLGLSICKQLVNMMSGDIEVHARIGEGTTFTVNLPLFASSK-EFKPA 518
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
+ + + GL+ L+I + + H M+V A+S +A L + +T
Sbjct: 519 ---SLSESAGLAGLKLLIIQTTPAYPNILQNHCLSWGMSVDTADSATIALDMLKKSATTP 575
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR------NLPKI-FLLATSIS 1027
LA +ID V D + GLE+ R L +I ++ S
Sbjct: 576 HPYDLA--IIDMPVADMD----------------GLELGRLIISAPGLARIPLIMLPSAP 617
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK---PSLGHLLKGKQI 1084
D K GI L+ KP+R + L +S +L + P+ I
Sbjct: 618 YKDDVAAKRAGITALVKKPVRKADLYQSLLNALGASIRLPHSETRLDMPATAAAQLSAHI 677
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+V+DN +N+ VA+ L G V + G A+ + +D MD MP+MDG++
Sbjct: 678 LLVEDNRINQAVAQAMLNSFGCTVDIAENGLEALQAID-RKAYDLVLMDCMMPKMDGYET 736
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T +IR +N N L PI+A+TA+ I+ E+C+ GMDDY++
Sbjct: 737 TAEIRRRQNCDN-----------------LSRFPIIALTANAIEGDREKCLLAGMDDYLT 779
Query: 1205 KPFEDEQLYTAVARF 1219
KPFE LY ++R+
Sbjct: 780 KPFESAALYKMISRW 794
>gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
Length = 1117
Score = 295 bits (756), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 212/632 (33%), Positives = 315/632 (49%), Gaps = 128/632 (20%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
++ E K AEA + KS+FLAT+SHEIRTPMNGV+GM +L+DT L Q +A+T +
Sbjct: 464 RQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRD 523
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
SG+ L+++IND+LD +K+E+G+L+ ++ F L ++++V+ + + +A+ KGIE+A +
Sbjct: 524 SGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDP 583
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
R+ +V DPGR RQ++ NL GN++KFT+ KG + + V S +D D
Sbjct: 584 RLRMLVRSDPGRLRQVLMNLGGNAVKFTE-KGGVSIEV-------SLLDGPDA------- 628
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
P + R+ V DTG+GIP EA
Sbjct: 629 ----------------PAMARFD-------------------------VRDTGIGIPPEA 647
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q R+F+ F Q D+ST+R YGGTG+GL+ISR L ELMGGE+G S G GS F T+
Sbjct: 648 QGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVGVESAVGRGSRFWITLPLEL 707
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
S P PD+S G R LV+DD + +V L+ + VH
Sbjct: 708 LAPQSAAP------PDLS---GHRVLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMG 758
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA-T 1024
L+ + ++A+V D ++ +V G E+ R + I +LA T
Sbjct: 759 ELTRAAAMGTPWEVAVV-------DSQMPVVT-----------GSEMVRMIHAIPMLAGT 800
Query: 1025 SISETDRDELKSD------GIVTLLTKPLRLSVLIGCF---------QEDPESSKKLQQK 1069
I T + +D I L KPLR S L+ E P + + K
Sbjct: 801 RIVVTSSQGMPADQNDGQPAIDAFLHKPLRQSTLLDTIGRVLGLTGPAERPADHAE-EYK 859
Query: 1070 RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD--KLTPPHNF 1127
+P+ L +ILV +DN VN++VA G L+K G V V G A++ +L P +
Sbjct: 860 ASEPAAKRL----RILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLP---Y 912
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD+QMPEMDG +AT IR L + VPI+AMTA+ +
Sbjct: 913 DVVLMDVQMPEMDGLEATRAIRALP-------------------LAAAQVPIVAMTANAM 953
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ ++ C GMD Y+SKP + +L A+A++
Sbjct: 954 RGDDQMCFDAGMDGYISKPIDRHKLAEALAKY 985
>gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252]
gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252]
Length = 1346
Score = 295 bits (754), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 216/706 (30%), Positives = 335/706 (47%), Gaps = 138/706 (19%)
Query: 561 CRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQ--------VENDYHEMMELK 612
RF+ PP TA A++ V ++ LLVG I I RI Q V+ E+ K
Sbjct: 726 ARFEITPPFWQTAWFAALMVTLLGLLVGGIHRYRIYRIEQQKEQLEALVQERTAELQAQK 785
Query: 613 ARAEA---------------------ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
+ EA A KS+FLA +SHEIRTPMNGVLGM ++L++ +
Sbjct: 786 RQLEATLEDLRRTKEELERANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELLLEMD 845
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
L Q + + H SG+ L++++ND+LD +KIE+GRLE E + F+L + +++V++LF+ +
Sbjct: 846 LTKEQRECVEIIHRSGETLLTILNDILDFSKIEAGRLELENIDFNLQETIEDVITLFAPR 905
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
A K +EL ++ +R EV GDP R RQ+++NL+GN+IKFT+ +G +
Sbjct: 906 AAAKQLELICFIEERALEVQ-GDPHRLRQVLSNLIGNAIKFTE-RGEV------------ 951
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
V+E L + + R
Sbjct: 952 -------VVEAELERLDER------------------------------------RAHWR 968
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
++V DTG+GIP + +F PF Q D ST+R YGGTG+GL+IS+ LVE+MGG IG SE
Sbjct: 969 ISVRDTGIGIPPDRLSHLFQPFTQLDGSTTRRYGGTGLGLAISKQLVEMMGGTIGVESEV 1028
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G GSTF+ + F + L+ ++ + + +R L++DD E+ R +
Sbjct: 1029 GKGSTFTVRIPFRLSSQRKLNGDERRAL-----LKDVRVLIVDDNEANREILRRQTLGWD 1083
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGL 1010
M +A S A + +LA++ D+ E+ G++L +KQ
Sbjct: 1084 MVPTLARSGPEALEMMRAAARQGHPFELAIL----DMMMPEMDGIMLAREIKQDPSLA-- 1137
Query: 1011 EISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQED------- 1059
+ P I L + + D + +L+KP R + L+ QE
Sbjct: 1138 ----DTPLILLSSYLFTREDHRAMDETLFAAVLSKPTRQSYLFNTLVRVLQESRPVAAAK 1193
Query: 1060 -----PESSKKLQQKRKKPSLGHLLKGK-QILVVDDNMVNRRVAEGALKKHGAIVTCVDC 1113
ES+ PS G+ +L+ +DN VN++VA L++ G V
Sbjct: 1194 QQAQQDESAATPSDSSATPSPTPRPAGRGHLLLAEDNPVNQKVALYHLERLGYTCDVVGD 1253
Query: 1114 GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVG 1173
G+ AV+ +DA MD+ MP MDGF+AT QIR E E
Sbjct: 1254 GKQAVEAAL-RGGYDAILMDVHMPVMDGFEATAQIREREAERGR---------------- 1296
Query: 1174 LWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
H PI+AMTA+ ++ E+C++ GMDDY++KPF+ ++L + R+
Sbjct: 1297 --HTPIIAMTANALRGERERCLEAGMDDYIAKPFKKDELKAVLERW 1340
>gi|302755686|ref|XP_002961267.1| hypothetical protein SELMODRAFT_73679 [Selaginella moellendorffii]
gi|300172206|gb|EFJ38806.1| hypothetical protein SELMODRAFT_73679 [Selaginella moellendorffii]
Length = 305
Score = 295 bits (754), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/281 (56%), Positives = 197/281 (70%), Gaps = 4/281 (1%)
Query: 492 YLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFG 551
Y+G ++D SLVE LL QL+ QTI+VNV D N S P+ MYG ++ D + V ++FG
Sbjct: 22 YVGGAFDFKSLVENLLQQLSKSQTIIVNVNDVMNKSNPLVMYGLNILDGNEIEVCQVEFG 81
Query: 552 DPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLL--VGHIFHAAINRIAQVENDYHEMM 609
DP K EM C +K + + +++L + IF+AA N I +VE Y +M
Sbjct: 82 DPFWKDEMRCDAGEKNLHSHRLLCGPPPLELLSLFCWLTQIFYAAGNCITKVEEGYCKME 141
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
+LK RAE+ADVAKSQFLATVSHEIRTPMNG LGMLQMLMD +LD+ Q DY TA SGK
Sbjct: 142 DLKVRAESADVAKSQFLATVSHEIRTPMNGALGMLQMLMDIKLDSTQKDYTHTALESGKQ 201
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
LI IN+VLDQAKIESGR+E E VPF LH +L+N+L+LFS+K K IELA YVS+RVP+
Sbjct: 202 LIKHINEVLDQAKIESGRMELETVPFKLHTILENILTLFSAKDKDKEIELAAYVSERVPD 261
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
V+G P R QI+T+LVGNSIKF D GHIFVS+HL +DV
Sbjct: 262 -VLGHPVRLHQIVTSLVGNSIKFP-DSGHIFVSMHLEEDVN 300
>gi|375104871|ref|ZP_09751132.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
gi|374665602|gb|EHR70387.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
Length = 812
Score = 294 bits (753), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 213/639 (33%), Positives = 301/639 (47%), Gaps = 104/639 (16%)
Query: 599 AQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLD 658
A VE E+ K AE A AKS FLA +SHEIRTPMNGVLGML +L DT L Q
Sbjct: 259 ATVERRTQELRLAKDAAEDASRAKSAFLANMSHEIRTPMNGVLGMLDLLRDTRLSERQRH 318
Query: 659 YAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIE 718
+A TAH+SG+ L++++ND+LD +KIE+GR+ E PF L ++D+ L LF+ A KG+E
Sbjct: 319 FADTAHSSGEALLAILNDILDFSKIEAGRMALEHAPFELAPLVDDALGLFARDAQAKGVE 378
Query: 719 LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778
L V +PE ++GDP R RQI+TNL+ N++KFT +G + V L S D
Sbjct: 379 LLAQVDAALPEHLLGDPLRLRQILTNLLSNAVKFTA-RGEVIVQARL----DSGTD---- 429
Query: 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTG 838
G P W + D+ M+
Sbjct: 430 ---------------------GAP-------WLALAVRDSGVGMDA-------------- 447
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
P A+V F F QAD ST+R YGGTG+GL+I R L LMGGE+ S PG GSTF+
Sbjct: 448 ---PTLARV--FDAFSQADVSTTRRYGGTGLGLTICRRLASLMGGELVATSTPGAGSTFT 502
Query: 899 FTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
+ E S P +P GL+ALV+DD + E+ + LQ + +A H A+
Sbjct: 503 LRLPLAEAPDGSARPAAPAGMPP-----GLKALVVDDNATGREILLHQLQGMGLAAHSAH 557
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
A + L+ P LVL D+ G + L+ R L I+
Sbjct: 558 GGLEALAQLNGAVREG-RPYELLVLDDR--MPGMTGRAVVRALRGDARFADLPIA----- 609
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVL------IGCFQEDPESSKKLQQKRKK 1072
+ TS+ + D L D + LTKP+R L + P L +
Sbjct: 610 ---MLTSVDDRRDDALGPDAVQAWLTKPVRRKTLHETLLRLAAGGAAPSRPAPLGEPSVL 666
Query: 1073 PSLGHLLKGK---------QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP 1123
L + + ++L+ +D+ VN+ VA+ L++ G GR AV +
Sbjct: 667 GGLDDAPRARDGGPSATRPRVLLAEDHPVNQLVAQTRLRELGCDTVLATNGREAVARWR- 725
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
FD MD MPE+DGF AT +IR LE SG+ PI+A+T
Sbjct: 726 EGGFDLVLMDCHMPELDGFDATREIRALEGP------SGDGR----------RTPIIALT 769
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
A+ + E+C+ GMD+++ KPF +QL A+ R+ +
Sbjct: 770 ANAMAGDRERCLAAGMDEHLPKPFTRDQLQAALQRWLQA 808
>gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
Length = 1767
Score = 293 bits (751), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 199/618 (32%), Positives = 312/618 (50%), Gaps = 105/618 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K A+AA AK FLA +SHEIRTPMN ++GM Q+ + T LD Q +Y + +
Sbjct: 1025 ELLVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERA 1084
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K L+S+IND+LD +KIE+G+L+ E VPF L +L+++ +FS KA K +EL V+
Sbjct: 1085 SKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPN 1144
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP + GD R Q++ NL+ N+IKFT+ +G + +S LN
Sbjct: 1145 VPRHLFGDSLRLGQVLINLMNNAIKFTE-RGEVLLS---------------------LNL 1182
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V+ ++D V L +V D+G+G+ + Q
Sbjct: 1183 VEQQNDDVV----------------------------------LRFSVRDSGIGLTADQQ 1208
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
++F F QAD+ST+R YGGTG+GL+I + LVELMGG IG S+ G GSTF FTV
Sbjct: 1209 AKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFTV----- 1263
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
L Q + E G+ LV DD + ++ R L+ + V S + A +
Sbjct: 1264 ---KLQISSGQKLTVAQELEGMPILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVT- 1319
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
C + + A+ LID + + + G+ +KQQ +K P+I +++
Sbjct: 1320 ---RC---IQQEYAVALIDWKMPNLD-GIETAKQIKQQAKKA--------PRILMVSAHA 1364
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK----PSLGHLLKGK 1082
++ +++ G+ ++KP+ S L+ + L +R+ P L LKGK
Sbjct: 1365 NQDFLSQIEELGLAGYISKPISASRLLDGIINSLGRAGVLPVRRQSESIDPKLLLPLKGK 1424
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+IL+V+DN +N VA L++ G I++ G+ A+DKL +FD MD QMP MDG+
Sbjct: 1425 RILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKL-EQQSFDLVLMDCQMPVMDGY 1483
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
QAT +R E+ E +P++AMTA+ + E C++ GM+D+
Sbjct: 1484 QATQALRK-RPELTE-------------------LPVVAMTANAMAGDKEMCLRAGMNDH 1523
Query: 1203 VSKPFEDEQLYTAVARFF 1220
++KP E LY + ++
Sbjct: 1524 IAKPIEVNLLYQTLLKYL 1541
>gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
Length = 921
Score = 292 bits (748), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 208/629 (33%), Positives = 313/629 (49%), Gaps = 109/629 (17%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+V E++ K AEAA AKS FLAT+SHEIRTPMNGVLGM ++L+D+ L+ Q +
Sbjct: 251 EVATRTEELLRAKEAAEAASQAKSDFLATMSHEIRTPMNGVLGMTELLLDSGLNHEQRHF 310
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
A+ NSG+ L+ +IND+LD +KIESG LE E V F L D+L++ L++F+ A +K +EL
Sbjct: 311 AEAVENSGRHLLGIINDILDFSKIESGHLELEAVEFELGDLLEDTLAMFAQPAEKKRLEL 370
Query: 720 AIYVSDRVPEV---VIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
++D PEV V GDP R RQI+ NL N+IKFT+ R +V V+
Sbjct: 371 ---IADLPPEVRRCVRGDPFRLRQIVGNLANNAIKFTE---------------RGEVVVR 412
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
++L + + G+ +L ++VED
Sbjct: 413 ARLLGEGTD--------------GY---------------------------RLRISVED 431
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+GIP AQ +IF F Q D ST+R +GGTG+GL+I R LV LMGGEIG S PG G+
Sbjct: 432 TGIGIPPHAQQKIFEQFSQLDGSTTRQFGGTGLGLAICRRLVGLMGGEIGVDSRPGAGAC 491
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
F + G+ + + DV+ R + ALV+DD + E+ L M V
Sbjct: 492 FHIDLCLPAGQSTA-----EALRCDVALER-VHALVVDDNATNREILLRQLHGWGMQVEC 545
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
+ A L+ + +LA++ + D GL L ++ G+
Sbjct: 546 SADGAGALDRLARAATAGEGFELAVLDMHMPHMD---GLQLATAIRANPALAGV------ 596
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQE-DPESSKKLQQKRK 1071
++ +L +S S E + GI+ + KP+R VL + D +
Sbjct: 597 -RLVVLTSSYSSASVRERERAGILRCVHKPIRQAELFEVLCSALRAVDAVPAATAVADEW 655
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
+P+ +G ++L+ +DN VN++V L K G V + G AV KL FD
Sbjct: 656 RPT-----RGGRVLLAEDNPVNQQVGLAMLAKLGIAVRVANDGEEAV-KLAATEAFDLIL 709
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD MP +DG++A+ IR E+ VPI+A+TA+V++ +
Sbjct: 710 MDCHMPVLDGYEASAAIRASEHA--------------------PRVPIVALTANVMEGNR 749
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E+C+ GMDD+++KP+ EQL + + R+
Sbjct: 750 ERCLAAGMDDFLAKPYALEQLQSTLQRWM 778
>gi|428215970|ref|YP_007089114.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004351|gb|AFY85194.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1277
Score = 292 bits (748), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 222/680 (32%), Positives = 330/680 (48%), Gaps = 77/680 (11%)
Query: 551 GDPSRKHEMH-C-RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEM 608
G+P+ +H C RF+ P + A + I L + +Q+ +
Sbjct: 647 GEPNGTIGLHQCDRFRHWEPQEIELLEAVAVQLGIALAQSQLLERERAARSQLAEQNQSL 706
Query: 609 MELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGK 668
+ + AE A+ AKS+FLAT+SHEIRTPMN V+GM +L+D L Q DY T SG
Sbjct: 707 KQARESAEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMNLTEEQRDYIDTIRTSGD 766
Query: 669 DLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVP 728
L+++IND+LD +KIESG+LE E PF+L ++ L LF+ KA +KG+EL + R P
Sbjct: 767 ALLTIINDILDFSKIESGKLELENHPFNLQTCIEEALDLFAPKAAEKGLELLYQIEVRTP 826
Query: 729 EVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788
+ +I D R RQI+ NL+GNS+KFT G I VSV+ L S
Sbjct: 827 QKIISDVTRLRQILVNLIGNSVKFTH-TGEIVVSVNAT----------------RLTSPT 869
Query: 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
++ +S P S + D + + + ++ DTG+GIP + R
Sbjct: 870 SQAKLATPLVSADPGNGDKPSGLQPRSPDQSPPVA----YEFQFSIRDTGIGIPSHRRDR 925
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
+F PF Q D+ST+R +GGTG+GL+I + L ELMGG + SE G GSTF FT+ +
Sbjct: 926 LFLPFSQVDASTTRQFGGTGLGLAICKRLSELMGGRMWIESEEGVGSTFYFTLIALSNPK 985
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
+ P + Q D S +G + L++DD + ++ Q M H A S A L
Sbjct: 986 ANHSPDYHQS--DRSLLKGKKLLIVDDNATNRQILLKQTQNWGMFPHQAASGSEALDLL- 1042
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
V L ++D + + + GL L ++ Q + ++LP + + E
Sbjct: 1043 -----EVSNHFDLAILDMQMPEMD-GLTLAARIQSQPQ------WQSLPLVMFTSMGKPE 1090
Query: 1029 TDRDELKSDGI----VTLLTKPLRLS----VLIGCFQEDPESS----KKLQQKRKKPSLG 1076
+ L+ DGI + KP++ S LI E P SS + L Q +K SL
Sbjct: 1091 S----LEVDGISIKFAAFINKPIKQSQLYNTLIQILDETPPSSPVKYEPLPQSKK--SLI 1144
Query: 1077 HLLKGKQ----ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
+ KQ IL+ +DN+VN++VA L + G + G ++ L ++D M
Sbjct: 1145 NADMAKQIPLRILLAEDNIVNQKVALRILDRMGYRADVANNGLEVLEALQ-RLSYDVILM 1203
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMPEMDG +AT QI E + L I+AMTA+ +Q E
Sbjct: 1204 DVQMPEMDGLEATRQICKKYGE----------------GLQLNKPKIIAMTANAMQGDRE 1247
Query: 1193 QCMKCGMDDYVSKPFEDEQL 1212
C+ GMDDY++KP E+L
Sbjct: 1248 ICLAAGMDDYITKPIRLEEL 1267
>gi|339484541|ref|YP_004696327.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
gi|338806686|gb|AEJ02928.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
Length = 921
Score = 292 bits (747), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 202/628 (32%), Positives = 318/628 (50%), Gaps = 118/628 (18%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+VE E++ K AEAA AKS+FLAT+SHEIRTPMNG+LGM ++L+DT+LD Q +
Sbjct: 248 EVEKRTAELVLAKESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLDTQLDKDQHRF 307
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
A+T +SG+ L+ +IND+LD +KIES +E E + F L ++++ L++F+ A++KG+EL
Sbjct: 308 AETVQSSGQHLLGIINDILDFSKIESDHMELETIDFDLVKLIEDTLTMFAQPADKKGLEL 367
Query: 720 -AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778
A + ++ GD R RQII NL+ N+IKFT+ +G I + L
Sbjct: 368 IAQFTPPNTAFMLRGDSFRIRQIIANLLNNAIKFTE-QGEIVIRTML------------- 413
Query: 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTG 838
LD + T+ ++ + VEDTG
Sbjct: 414 -------------------------------------LDGSETLTRVS-----ICVEDTG 431
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
+GIP +IF F QAD ST+R YGGTG+GL+I + L+ELM G I S PG GS F
Sbjct: 432 IGIPPVYHEKIFQNFSQADGSTTRQYGGTGLGLTICKKLLELMEGSIHVESSPGHGSKFW 491
Query: 899 FTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
+ E++ L PD+++ RG+RALV+DD E+ + LQ ++ V A
Sbjct: 492 INLRL---EKSKLQ---HSNFPDMTKLRGVRALVVDDNQTNREILKLQLQNWQINVECAE 545
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL-- 1016
Q A +Y++ + + LV++D +H + GL+++R +
Sbjct: 546 DAQQALAYMTQAVAEN--KSFHLVILD-----------MHM-----PQMDGLQLARKIHA 587
Query: 1017 ------PKIFLLATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPE--SSK 1064
++ +L ++ S + E ++ GI+ + KP+R L ++I D + ++
Sbjct: 588 HPDFSKTRMMMLTSTYSNASQLERQNTGILRCVNKPVRQKELLDIIIDVMGRDLDNHATN 647
Query: 1065 KLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
+K +L GK +L+ +DN VN+ VA+ L K G G+ A+ L
Sbjct: 648 PEFEKVSVSTLTQSFHGK-VLLAEDNPVNQEVAKAMLAKLGLDTVIAHDGQQAL-YLIQN 705
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
+ +D MD QMP MDGF+AT IR + FGN I+A+TA
Sbjct: 706 NQYDLILMDCQMPNMDGFEATAHIR-----------------QQFGNSH----TIIALTA 744
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
+ + ++C+ GM+D++SKP+ +QL
Sbjct: 745 NATEDDRKRCLDGGMNDFLSKPYSIDQL 772
>gi|383454339|ref|YP_005368328.1| sensory box histidine kinase/response regulator [Corallococcus
coralloides DSM 2259]
gi|380732170|gb|AFE08172.1| sensory box histidine kinase/response regulator [Corallococcus
coralloides DSM 2259]
Length = 909
Score = 291 bits (746), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 213/632 (33%), Positives = 320/632 (50%), Gaps = 114/632 (18%)
Query: 605 YHEMMEL-KAR--AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQ 661
YH++ +L +AR AE A+ AKS FLATVSHEIRTPMN ++GM +LMDT L Q D+A
Sbjct: 224 YHDVTDLQRARQSAEDANQAKSLFLATVSHEIRTPMNAIIGMAGLLMDTALTPEQRDFAS 283
Query: 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
T SG L+ L+ND+LD +KIE+GR+E E PF+L +++VL L + +A++K ++L
Sbjct: 284 TIRQSGDALLGLLNDMLDFSKIEAGRVELEQQPFNLRQCVESVLDLLAMRASEKSLDLGY 343
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLE 781
+V+D P V+GD R RQ++ NLVGN++KFT+ +G + +S VD + L
Sbjct: 344 HVTDETPVSVVGDGARLRQVLLNLVGNAVKFTE-RGGVSIS----------VDTPRQPLA 392
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
G +L V+DTG+GI
Sbjct: 393 PG------------------------------------------GLFELHFAVQDTGLGI 410
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE--PGTGSTFSF 899
A+ +F PF Q + S SR YGGTG+GL+IS+ LVE MGG + SE PG G+TF F
Sbjct: 411 TEAARAGLFQPFNQLNESVSRRYGGTGLGLAISKRLVEAMGGRLWMESEGVPGKGATFHF 470
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
T E R + PD + G R LV+DD +I ++ L MA+ S
Sbjct: 471 TFQAREAPRGG-----EPLRPDALKLHGRRVLVVDDNAINRKLLGRQLAAWGMAIVEVGS 525
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
A S L + L ++D + + G L ++QQR +R LP
Sbjct: 526 GAEALSKLESGA------RFDLAILDHRMPLMD-GPTLAAHIRQQRD------ARELP-- 570
Query: 1020 FLLATSISETDRDELKSDGIVT-LLTKPLRLS----VLIGCFQEDPESSKKL----QQKR 1070
LL TS + D + G+ T +L +P++ S L+ C +D S++ +
Sbjct: 571 LLLLTSFDQRD---AQPPGLFTAVLPRPVKASHLHDALMTCLAQDLISARPMPVTPAPAT 627
Query: 1071 KKPSLGHLLKGKQ----ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN 1126
++ S+ + G+Q IL+V+DN N+++A L++ G + GR + L
Sbjct: 628 RERSVFNTRPGEQMPLRILLVEDNPTNQKLALLVLERLGYPADTANNGREGL-SLISRKR 686
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
+D MD+QMPE+DG QAT Q+R + ++EQ W ++AMTA+
Sbjct: 687 YDVVLMDVQMPELDGLQATRQLRQ-DMPVSEQP---------------W---VIAMTANA 727
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ A +C+ GMDD++SKP E+L +A+ R
Sbjct: 728 MTADRRECLDAGMDDFLSKPIRVEELISALRR 759
>gi|302803079|ref|XP_002983293.1| hypothetical protein SELMODRAFT_117801 [Selaginella moellendorffii]
gi|300148978|gb|EFJ15635.1| hypothetical protein SELMODRAFT_117801 [Selaginella moellendorffii]
Length = 283
Score = 291 bits (746), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/283 (56%), Positives = 197/283 (69%), Gaps = 10/283 (3%)
Query: 493 LGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGD 552
+G ++D SLVE LL QL+ QTI+VNV D TN S P+ MYG ++ D + V ++FGD
Sbjct: 1 VGGAFDFKSLVENLLQQLSESQTIIVNVNDVTNKSNPLVMYGLNILDGNEIEVCQVEFGD 60
Query: 553 PSRKHEMHCRFKQKP----PVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEM 608
P K EM C +K V WT + G+VVI LLV IF+AA N I +VE Y +M
Sbjct: 61 PFWKDEMRCDAGEKNLHSHSVVWTT---TFGIVVIVLLVAQIFYAAGNCITKVEEGYCKM 117
Query: 609 MELKARAEAADVAKSQFLATVSHEIRTPMNGVLGM-LQMLMDTELDAAQLDYAQTAHNSG 667
+LK RAE+ADVAKSQFLATVSHEIRTPMNG LG+ + +LD+ Q DY TA SG
Sbjct: 118 EDLKVRAESADVAKSQFLATVSHEIRTPMNGALGVHVANAHGIKLDSTQKDYTHTALESG 177
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
K LI IN+VLDQAKIESGR+E E VPF LH +LDN+L+LFS+K K IELA YVS+RV
Sbjct: 178 KQLIKHINEVLDQAKIESGRMELETVPFKLHTILDNILTLFSAKNKDKEIELAAYVSERV 237
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
P+ V+G P R I+T+LVGNSIKFT D GHIFVS+HL ++V
Sbjct: 238 PD-VLGHPVRLHLIVTSLVGNSIKFT-DSGHIFVSMHLEENVN 278
>gi|430748143|ref|YP_007207272.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430019863|gb|AGA31577.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 1519
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 195/599 (32%), Positives = 296/599 (49%), Gaps = 97/599 (16%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+FLA +SHEIRTP+NG++GM ++ +DTEL Q +Y S L+++IND+LD +
Sbjct: 873 KSEFLANMSHEIRTPLNGIIGMTELALDTELTPDQQEYLGMVKLSADHLLTVINDILDFS 932
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+L+ + + FHL D LD+ ++ + +A++KG+ELA +V+ VP+V++GDP R Q+
Sbjct: 933 KIEAGKLDLDIIDFHLRDALDDTMATLAMRAHKKGLELADHVAADVPDVLVGDPHRLCQV 992
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL+GN+IKFT+ +G + V VQ +S++
Sbjct: 993 VVNLIGNAIKFTE-RGEAVLRVE----------------------VQSRSEQ-------- 1021
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
+ L V DTG+GIP E Q ++F F QAD+ST+
Sbjct: 1022 -------------------------GVSLHFAVSDTGIGIPPEQQQKLFKAFSQADTSTT 1056
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R YGGTG+GL+IS LV+LMGGEI S+ G GS F FT+ F P + +
Sbjct: 1057 RKYGGTGLGLAISARLVQLMGGEIWLESQAGQGSIFHFTLPFGL----VCGPVARARPVE 1112
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
+ GL L++DD + + L M + A + L++ AL
Sbjct: 1113 PEQVHGLPVLIVDDNATNRRILEEMLTNWGMKPTTVAGGREAIATLAEARGAG--RPFAL 1170
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVT 1041
VL+D + + G L +KQ G + +L+++ D + G+ T
Sbjct: 1171 VLLDAMMPGMD-GFTLAEQIKQDSALTG-------STLMMLSSANRREDAARCQELGVAT 1222
Query: 1042 LLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK--------QILVVDDNMVN 1093
L KP+R S L+ +S + +P+ + G ++L+ +DN +N
Sbjct: 1223 YLMKPIRESSLLDAIMTTLGASMSDEPYGAQPAAPAMPNGSRRTWKRMLRLLLAEDNAIN 1282
Query: 1094 RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLEN 1153
+R+A LKK G V V+ GR A+ + FDA MD+QMPEMDGF+AT IR E
Sbjct: 1283 QRLAMALLKKQGHQVVVVNNGREALAAMN-GSRFDAVLMDVQMPEMDGFEATAAIRSRE- 1340
Query: 1154 EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
G+ H I+AMTA ++ ++C+ GMD YVSKP E L
Sbjct: 1341 ----------------AGTGV-HTTIIAMTAHALKGDRDRCLDAGMDAYVSKPLRLEDL 1382
>gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
DSM 771]
Length = 1267
Score = 291 bits (745), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 216/640 (33%), Positives = 317/640 (49%), Gaps = 109/640 (17%)
Query: 597 RIAQVENDY-------HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMD 649
RIA V +D + E K AE + KS+FLA +SHEIRTPMNG++G +LM
Sbjct: 479 RIAGVASDVTVRKKLEQALTEAKEEAEYSARVKSEFLANMSHEIRTPMNGIIGFCHLLMQ 538
Query: 650 TELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFS 709
T+L++ QL+Y + + L+ +IND+LD +K+E+G++ E V F+L +V+ ++ L
Sbjct: 539 TQLNSKQLNYLTKIRSQSQHLLGIINDILDFSKLEAGKMSVEHVDFNLEEVIADLFYLLE 598
Query: 710 SKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV 769
++A+QKG+EL V VP + GDP R +Q++ NL N+IKF+ D+G+IF+ V
Sbjct: 599 NQASQKGLELLANVQKGVPAHLKGDPLRLKQVLVNLANNAIKFS-DQGNIFLRVE----- 652
Query: 770 RSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIK 829
K+D D SD+V + S
Sbjct: 653 --KIDQSDS-----------DSDQVIISFS------------------------------ 669
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
VED G+G+ E R+F F QADSST+R YGGTG+GL+IS+ LVELMGGEI S
Sbjct: 670 ----VEDNGIGLTEEQMQRLFNSFSQADSSTTRKYGGTGLGLAISKYLVELMGGEISVSS 725
Query: 890 EPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQR 949
E G GSTFSF++ F L Q D + +G R L++DD E+ +L
Sbjct: 726 EYGVGSTFSFSLPF-----GILASGIQTNQRDNIDLKGSRVLIVDDNEASQEILASYLVD 780
Query: 950 LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009
L V V +S Q A L +++ID W K GL ++ + K
Sbjct: 781 LNFDVTVLSSGQEAIDLLVKEGEA-----FDILVID---W-KMPGLDGVETIRLIKEKMK 831
Query: 1010 LEISRNLPKIFLLATSISETDRDELKSD----GIVTLLTKPLRLSVLIGCFQE---DPES 1062
LE +P I + S D DEL++ GI L KP S L+ + +S
Sbjct: 832 LE---KIPIIIM----ASAYDLDELRNVFSELGIKAFLNKPHTPSQLMDAITMAYVESDS 884
Query: 1063 SKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
+ Q ++ L+G IL+V+DN++N+ VA L+ G V + GR AV+K+
Sbjct: 885 YYRPQDLKENSLFTGKLEGNHILLVEDNLINQMVAVEILESVGISVDVAENGREAVEKVR 944
Query: 1123 PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAM 1182
N+D MDLQMP MDG +AT +R +E + +PI+A+
Sbjct: 945 AG-NYDLVLMDLQMPVMDGMEATRILR------DEPLYR--------------DLPIIAL 983
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
TA I EQC+ GM+D++SKPF E + +++ S
Sbjct: 984 TAHAISGFREQCIGLGMNDFISKPFLPEDMLLILSKCLTS 1023
>gi|445497360|ref|ZP_21464215.1| signal transduction histidine-protein kinase BarA [Janthinobacterium
sp. HH01]
gi|444787355|gb|ELX08903.1| signal transduction histidine-protein kinase BarA [Janthinobacterium
sp. HH01]
Length = 1649
Score = 291 bits (745), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 209/617 (33%), Positives = 311/617 (50%), Gaps = 103/617 (16%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
+ +A AEAA AKS FLA +SHEIRTPMN +LG + +L LDY + +G+
Sbjct: 978 QARANAEAATRAKSDFLANISHEIRTPMNAILGFAGLGTHLDLPPQPLDYFRKIGRAGQS 1037
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+ +INDVLD +KIESG+LE E +PF L D L + LFS +A ++G+EL I+ + VP
Sbjct: 1038 LLEIINDVLDFSKIESGKLELEALPFDLPDTLSQLADLFSWRAAERGLELVIWAAPDVPS 1097
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
++GD R QI+ NLVGN++KFT +GHI + V E+ L++
Sbjct: 1098 NLLGDSLRLSQILVNLVGNALKFTA-RGHIELRV-----------------ERDLHA--- 1136
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
PV G I L VED+G+GI E Q R+
Sbjct: 1137 ------------PVPGD-------------------GYIALRFVVEDSGLGISEEQQARL 1165
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
F F QAD+ST+R YGGTG+GL+IS+ LV MGG I SEPG GS+F F++
Sbjct: 1166 FQAFAQADASTTRLYGGTGLGLAISQQLVRKMGGVIRVDSEPGVGSSFGFSIAVQLASDQ 1225
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
+ P+ P V G R LV+DD +E R+ L+ + ++N A + S
Sbjct: 1226 T--PRAAPLPPSV---LGKRVLVVDD----SEAVRHMLK-----IQLSNLGLKARAVASG 1271
Query: 970 TCSTSV--LPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
T + + L ++L+D D+ D + + QR G E++ +P + +
Sbjct: 1272 TAAVAAMQLDDYDILLMDADMPD------MDGIETLQRIAGDAELA-AVPAVLMTTAYAR 1324
Query: 1028 ETDRDELKSDGIVTLLTKP----LRLSVLIGCFQEDPESSKKLQQKRKKPSLG-HLLKGK 1082
E R + ++ L KP L SV++ ESS+ + PS+ ++G
Sbjct: 1325 EHSRQTGEQSRLMPFLDKPAHPYLLRSVVLAALGL--ESSQPAVRLVAAPSVAVQRIRGA 1382
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+LVVDDN +N++VA L++ G V G A +++ +DA MD+QMP+MDG+
Sbjct: 1383 HVLVVDDNSINQQVASEILQRAGVRVDLAGSGEEAA-RMSAAGRYDAVLMDIQMPDMDGY 1441
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
QAT IR A+ +S+ +PI+AMTA + E+C+ M+DY
Sbjct: 1442 QATALIR----------AAPDSA----------RLPIIAMTAHAVAGYRERCLAMDMNDY 1481
Query: 1203 VSKPFEDEQLYTAVARF 1219
V+KP + + LY +A +
Sbjct: 1482 VTKPIDPDTLYAVLATW 1498
>gi|288942043|ref|YP_003444283.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
gi|288897415|gb|ADC63251.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
Length = 1450
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 199/619 (32%), Positives = 295/619 (47%), Gaps = 95/619 (15%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K +AE A AKS FLA +SHEIRTPMN ++GM + + T LDA Q DY + H S
Sbjct: 689 ELLRAKEQAEEATQAKSNFLANMSHEIRTPMNAIIGMAHLALQTPLDARQRDYIEKVHRS 748
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+ ++ND+LD +KIE+GRL+ E + F L DV+DN+ +L KA KG+EL +
Sbjct: 749 AEALLGILNDILDFSKIEAGRLDIEQIDFRLEDVMDNLANLVGLKAEDKGLELMFDLPPE 808
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP +IGD R QI+TNL N++KFT+ G I + VR + + D
Sbjct: 809 VPTALIGDALRLGQILTNLGNNAVKFTEPGGEILIG------VRVEAEGAD--------- 853
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
W + L V DTG+G+ E
Sbjct: 854 -----------------------W-----------------VCLGFEVRDTGIGMTPEQC 873
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F F QAD ST+R YGGTG+GL+I + L ELMGGEIG SEPG G+ F F+V
Sbjct: 874 GRLFESFSQADMSTTRRYGGTGLGLAICKYLTELMGGEIGVESEPGAGTCFRFSVRLG-- 931
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
R P+ +V E LR LV+DD + + + LQ+L +S A +
Sbjct: 932 -RQRAAPEGALHV--ARELLPLRVLVVDDNASARAILTHMLQQLGFGAEAVSSGAEAIAR 988
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
L + L+L+D W K GL ++ R + + +P + ++
Sbjct: 989 LR---AVETQAPFDLMLLD---W-KMPGLDGVQTIRALRAEAAVS---QVPALIMITAYG 1038
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGCF-----QEDPESSKKLQQKRKKPSLGHLLKG 1081
E R G+ LTKP+ S L+ E E ++ ++ L+G
Sbjct: 1039 REGVRQASADLGVAGFLTKPVAPSALLNTLMHAIGHEVSELTRAASRQEAASEACARLRG 1098
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+L+V+DN +N+ +A L +G V G+ A+D+L FD MD QMP MDG
Sbjct: 1099 AHVLLVEDNELNQELALELLVSNGLSVEIAANGQEALDRLAGESRFDGVLMDCQMPVMDG 1158
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ AT IR E+ G +P++AMTA+V+ E+ + GM+D
Sbjct: 1159 YTATRAIRR--------------RPELAG------LPVIAMTANVMSGDREKALAAGMND 1198
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
++ KP ++T +A++
Sbjct: 1199 HIGKPINVRDMFTTMAKWI 1217
>gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
Length = 1771
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 193/620 (31%), Positives = 312/620 (50%), Gaps = 109/620 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K A+AA AK FLA +SHEIRTPMN ++GM Q+ + T LD Q +Y + +
Sbjct: 1025 ELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERA 1084
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+S+IND+LD +KIE+G+L+ + VPF L +L+++ +FS K K +EL V+
Sbjct: 1085 SQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPN 1144
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP + GD R Q++ NL+ N+IKFT+ +G + +S++L
Sbjct: 1145 VPRHLFGDSLRLGQVLINLMNNAIKFTE-RGEVLLSINL--------------------- 1182
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V+ ++D V L +V D+G+G+ E Q
Sbjct: 1183 VEQQNDDV----------------------------------TLRFSVRDSGIGLTDEQQ 1208
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--T 904
++F F QAD+ST+R YGGTG+GL+I + LVELMGG IG S+ G GSTF FTV +
Sbjct: 1209 AKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYFTVKLQIS 1268
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
G++ ++ E G+ LV+DD + ++ R L+ + V + + A
Sbjct: 1269 SGQKLTVG----------QELEGMSVLVVDDNATARDIMRTALESMGFNVDTVRTGEEAV 1318
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
S C + + A+ LID + + GL ++QQ + P+I +++
Sbjct: 1319 S----RC---IQHEYAVALIDWKMPSMD-GLEAARQIQQQAKAA--------PRILMVSA 1362
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK----PSLGHLLK 1080
+ +++ G+ ++KP+ S L+ + L +R P L LK
Sbjct: 1363 HANHEFLTQIEQLGLAGYISKPISASRLLDGIMNALGRAGILPVRRHNEALDPQLLLPLK 1422
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
GK++L+V+DN +N VA L++ G I++ G+ A+DKL+ ++D MD QMP MD
Sbjct: 1423 GKRVLLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLS-QQSYDLVLMDCQMPVMD 1481
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G+QAT IR L H+P++AMTA+ + E C++ GM+
Sbjct: 1482 GYQATMAIRQRPE--------------------LAHLPVIAMTANAMAGDKEMCLRAGMN 1521
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
D+++KP E LY + ++
Sbjct: 1522 DHIAKPIEVNILYQTLLKYL 1541
>gi|386314949|ref|YP_006011114.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200]
gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200]
Length = 1770
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 193/620 (31%), Positives = 311/620 (50%), Gaps = 109/620 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K A+AA AK FLA +SHEIRTPMN ++GM Q+ + T LD Q +Y + +
Sbjct: 1025 ELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERA 1084
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+S+IND+LD +KIE+G+L+ + VPF L +L+++ +FS K K +EL V+
Sbjct: 1085 SQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPN 1144
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP + GD R Q++ NL+ N+IKFT+ +G + +S++L
Sbjct: 1145 VPRHLFGDSLRLGQVLINLMNNAIKFTE-RGEVLLSINL--------------------- 1182
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V+ ++D V L +V D+G+G+ E Q
Sbjct: 1183 VEQQNDDV----------------------------------TLRFSVRDSGIGLTDEQQ 1208
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--T 904
++F F QAD+ST+R YGGTG+GL+I + LVELMGG IG S+ G GSTF FTV +
Sbjct: 1209 AKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYFTVKLQIS 1268
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
G++ ++ E G+ LV+DD + ++ R L+ + V + + A
Sbjct: 1269 SGQKLTVG----------QELEGMSVLVVDDNATARDIMRTALESMGFNVDTVRTGEEAV 1318
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
S C + A+ LID + + GL ++QQ + P+I +++
Sbjct: 1319 S----RCMQH---EYAVALIDWKMPSMD-GLEAARQIQQQAKAA--------PRILMVSA 1362
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK----PSLGHLLK 1080
+ +++ G+ ++KP+ S L+ + L +R P L LK
Sbjct: 1363 HANHEFLTQIEQLGLAGYISKPISASRLLDGIMNALGRAGILPVRRHNEALDPQLLLPLK 1422
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
GK++L+V+DN +N VA L++ G I++ G+ A+DKL+ ++D MD QMP MD
Sbjct: 1423 GKRVLLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLS-QQSYDLVLMDCQMPVMD 1481
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G+QAT IR L H+P++AMTA+ + E C++ GM+
Sbjct: 1482 GYQATMAIRQRPE--------------------LAHIPVIAMTANAMAGDKEMCLRAGMN 1521
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
D+++KP E LY + ++
Sbjct: 1522 DHIAKPIEVNILYQTLLKYL 1541
>gi|383764048|ref|YP_005443030.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381384316|dbj|BAM01133.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 731
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 221/630 (35%), Positives = 301/630 (47%), Gaps = 117/630 (18%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
Q+E + L AEAA AKS+FLA +SHEIRTP+N V+GM +L+D+ L A Q ++
Sbjct: 185 QLEQALEQARRLAVEAEAASRAKSEFLANISHEIRTPLNAVIGMTTLLLDSALTAEQREF 244
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
A+T SG+ L+SL+NDVLD +KIE+GRLE E +PF ++ +SLF+ +A+ KGIEL
Sbjct: 245 AETIRISGEALLSLLNDVLDFSKIEAGRLELERIPFDAMKCVEEAVSLFARQASAKGIEL 304
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+ + +P+ V+GDP R RQI+ NLV N++KFT + G I VSV
Sbjct: 305 VLLPENVLPDRVMGDPVRLRQILINLVNNAVKFTHE-GEIVVSV---------------- 347
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
W W+ M ME + L +V DTGV
Sbjct: 348 ---------------------------WVEWDA-AMSSPAEAMESVP-CTLRFSVRDTGV 378
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GIP E + R+F F Q DSST+R YGG+G+GL+I+R L LMGG++ SEPG GSTF F
Sbjct: 379 GIPAERRGRLFQAFSQVDSSTTRKYGGSGLGLAIARNLCRLMGGDMWVESEPGVGSTFFF 438
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
TV E ++ P +Q+ S F G LV+DD + + +RL M S
Sbjct: 439 TV---RSEAVAVTPSYQE-----SPFAGRILLVLDDNRAARKAFMFWAERLGMKAVAVAS 490
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
+ A L + LP LALV D D+ L +H RN+P I
Sbjct: 491 EEEAFQILEEA-----LPDLALV--DGDLSPPSAPLSMHLR------------GRNIPAI 531
Query: 1020 FLLATSI-------SETDRDELKSDG--IVTLLTKPLRLSVL-------IGCFQEDPESS 1063
F T+I +ET + I L KP+ + L +G PE
Sbjct: 532 F---TTIQQNGIQQNETQHQNAADNDLRIEIWLRKPVFFASLLEQVRRALGQLPSVPEKR 588
Query: 1064 KKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP 1123
+ + R +LG + IL+V+DN VN++VA L++ G G AV
Sbjct: 589 RSI-ASRLDATLGQ-RRPLSILLVEDNPVNQKVALMMLRRLGYTPDLATNGAEAVAA-QQ 645
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP-ILAM 1182
+D MDL MPEMDGF+A +IR L L P I AM
Sbjct: 646 RREYDLVLMDLHMPEMDGFEAAQRIRRLP---------------------LRRQPLIYAM 684
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
TA V +A + GMD + KP EQL
Sbjct: 685 TAAVTEADLAGVREAGMDGVIPKPVRVEQL 714
>gi|440683655|ref|YP_007158450.1| GAF sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428680774|gb|AFZ59540.1| GAF sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1069
Score = 290 bits (743), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 219/687 (31%), Positives = 334/687 (48%), Gaps = 117/687 (17%)
Query: 563 FKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAK 622
F+Q P + A + I L H+ + ++ + + K AEAA+ AK
Sbjct: 463 FRQWTPEEIELLEAVAAQLGIALAQAHLLEQETRQREELTLKNSALEQAKHAAEAANRAK 522
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S FLA +SHEIRTPMN V+GM +L+DT L Q D+ +T NSG+ L+++IND+LD +K
Sbjct: 523 SDFLAMMSHEIRTPMNAVIGMTGVLLDTNLTVQQQDFVETIRNSGESLLTIINDILDFSK 582
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
IESG+LE E F L + ++ VL + KA +K IELA ++ +VP +IGD R RQI+
Sbjct: 583 IESGKLELEEQSFELRNCVERVLDTLAPKAAEKDIELAYLINSQVPAKIIGDLTRVRQIL 642
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
NLV N+IKFT+ KG + +SVH + + V E H S K Y
Sbjct: 643 MNLVSNAIKFTK-KGEVILSVHAK-------PIANTVAES------HPSPKTY------- 681
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
++L ++DTG+GIP +F PF QADSST+R
Sbjct: 682 --------------------------EILFAIKDTGIGIPANKMNLLFQPFSQADSSTTR 715
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSE------PGT---------------GSTFSFTV 901
YGGTG+GL IS+ L E+MGG + S+ P + GSTFSFT+
Sbjct: 716 KYGGTGLGLVISKRLSEMMGGTLWVESQGSIGGNPSSRWQDEFLISCLPFDQGSTFSFTI 775
Query: 902 TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ 961
T E ++LD ++ D ++ G R L++DD ++ + M ++ S Q
Sbjct: 776 TVPEDINSNLDS--EELSTDSAQLTGKRLLIVDDNPAHCQILSLQARSWNMQIYAVTSAQ 833
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFL 1021
A + + + ++D ++ + + G+ L +++Q + +P + L
Sbjct: 834 QALEQIRQGV------EFDIAILDLNMPEMD-GVTLAQEIRKQSN------CKTIPLVIL 880
Query: 1022 LATSISETDRDELKSD-GIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLG 1076
TS+++ + + SD I LTKP++ S L F P K + + P +
Sbjct: 881 --TSLTKAEISQEYSDIKIAAYLTKPVKQSQLYDALAHVFGNQP--IKAIISPTQIPEID 936
Query: 1077 HLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K +IL+ +D +VN++VA LKK G G + L ++D MD
Sbjct: 937 FHLAEKLPLRILLAEDTVVNQKVALLMLKKIGYRADVAANGLEVLTALQ-RQSYDVVLMD 995
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASG-ESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
+QMPEMDG + T QI I G E+S + I+AMTA+ +Q E
Sbjct: 996 VQMPEMDGLETT-QI----------ICQGWEASQRPY---------IIAMTANAMQGDRE 1035
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARF 1219
C+ GMDDY+SKP + L+ A++R+
Sbjct: 1036 ICLAAGMDDYISKPVQIVDLFHALSRY 1062
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L GK++L+VDDN + ++ + + V + A++++ FD +DL MPE
Sbjct: 797 LTGKRLLIVDDNPAHCQILSLQARSWNMQIYAVTSAQQALEQIRQGVEFDIAILDLNMPE 856
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG +IR N +P++ +T+ +++
Sbjct: 857 MDGVTLAQEIRKQSN--------------------CKTIPLVILTSLTKAEISQEYSDIK 896
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
+ Y++KP + QLY A+A F
Sbjct: 897 IAAYLTKPVKQSQLYDALAHVF 918
>gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
Length = 1705
Score = 290 bits (743), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 206/646 (31%), Positives = 305/646 (47%), Gaps = 112/646 (17%)
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
L G + + + A+VE ++ K AE A AKS FLA +SHEIRTPMN ++G+
Sbjct: 940 LAGTVIDISDRKAAEVE-----LLAAKELAEEATQAKSSFLANMSHEIRTPMNAIIGLSH 994
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
+ + TELDA Q +Y + H S + L+ +IND+LD +KIE+G+L+ E + F L DV+DN+
Sbjct: 995 LALQTELDARQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEHIAFRLEDVMDNLA 1054
Query: 706 SLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
+L KA +KG+EL + VP ++GDP R QI+ NL N++KFT+ G I +SV
Sbjct: 1055 NLVGLKAEEKGVELMFDLPPEVPTALVGDPLRLGQILINLGNNAVKFTEPGGEILISVR- 1113
Query: 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQL 825
V+D+ W
Sbjct: 1114 -------------------------------------VMDQGADW--------------- 1121
Query: 826 GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
++L +V DTG+G+ E Q R+F PF QAD ST+R YGGTG+GL+IS L ELMGGEI
Sbjct: 1122 --VRLGFSVCDTGIGMSAEQQARLFEPFSQADMSTTRKYGGTGLGLTISTRLTELMGGEI 1179
Query: 886 GFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRY 945
S PG GSTF F V + +P E LR LV+DD + E+
Sbjct: 1180 RVESAPGAGSTFGFDVRLGQQSGVVSEPARLTL-----EALSLRILVVDDNATAREILTQ 1234
Query: 946 HLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005
L AV A S + A L L LVL+D + + + + + Q
Sbjct: 1235 MLLAFGFAVESAASGREALDRLR---VVDRLEPFDLVLMDWKMPEMDGIETIRRLCAQT- 1290
Query: 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLI-----------G 1054
EI++ P + ++ E G+ LTKP+ S L+ G
Sbjct: 1291 -----EITQA-PALIMVTAYGHEAAHQVAVELGVSGFLTKPVTSSNLLDAIMHAVGRRGG 1344
Query: 1055 CFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCG 1114
F P Q++ + G L+G +L+V+DN +N+ +A L +G V G
Sbjct: 1345 QFTRMPNR----QEESSEAIAG--LRGAHVLLVEDNELNQELALELLVSNGLSVEIAANG 1398
Query: 1115 RAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL 1174
R A+++L FD MD QMP MDG+ AT IR E+ G
Sbjct: 1399 REALERLAGESRFDGVLMDCQMPVMDGYTATRAIRE--------------QPELAG---- 1440
Query: 1175 WHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+P++AMTA+V+ E+ + GM+D++ KP +++ +A++
Sbjct: 1441 --LPVIAMTANVMSGDREKALAAGMNDHIGKPINVREMFATLAKWI 1484
>gi|372272319|ref|ZP_09508367.1| multi-sensor hybrid histidine kinase [Marinobacterium stanieri S30]
Length = 1153
Score = 290 bits (741), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 213/626 (34%), Positives = 306/626 (48%), Gaps = 121/626 (19%)
Query: 606 HEMMELKARAEA--ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTA 663
+E ++AR EA + AKS+FLA +SHEIRTPMNG+LGML++++D +L Q DY + A
Sbjct: 477 YESQLVQARQEALQSTQAKSEFLANMSHEIRTPMNGILGMLELVLDADLPPEQKDYIRIA 536
Query: 664 HNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYV 723
++SG+ L++L+N +LD +K+E+G++E E + F+L + L+ LF+ +A KG+E+A +
Sbjct: 537 NSSGQTLLALLNSILDLSKVEAGKMELEHLDFNLRETLEETTKLFAPQAQGKGLEIAALI 596
Query: 724 SDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKS 783
D VPE GDP R RQ+ITNL+GN+IKFT D+G I LA DV + D
Sbjct: 597 DDSVPEYANGDPTRLRQVITNLLGNAIKFT-DQGEI----TLAADVTQEAD--------- 642
Query: 784 LNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPL 843
+SW +L + + DTG+GI
Sbjct: 643 ------------------------QSW------------------RLHIGIRDTGIGIAA 660
Query: 844 EAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903
+AQ RIF F QAD ST+R YGGTG+GL++SR + MGG+I S GSTF FT
Sbjct: 661 DAQERIFEGFTQADGSTTRRYGGTGLGLTLSRRIATRMGGQIWLESTLDQGSTFHFTARL 720
Query: 904 TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
+ + +P+ ++P+ + RGLRAL++DDK R LQR A + +
Sbjct: 721 ----KPAKEPEA-LFIPN-EDLRGLRALIVDDKV----TNRVILQRFCDAWGIYHQ---- 766
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP------ 1017
S + L +L L +D VL M+ G+E++R +
Sbjct: 767 ----SADSGVNALAKLELAAEQGKAFD----CVLSDMMMPD--MDGVEVARQIHANAQLG 816
Query: 1018 --KIFLLATSISETDRDELKSDGIVTLLTKPLRL--------SVLIGCFQEDPESSKKLQ 1067
K+ L+ + RD+ + G LL KP+ VL+G Q P S+
Sbjct: 817 DLKLLLITSYTGRGLRDKARLAGFDRLLPKPIGRRELHDALEQVLLGPAQ-TPASAPASG 875
Query: 1068 QKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
+ G G +IL+ +DN VNR+VA L+K G V G A+++ F
Sbjct: 876 ALEHSATPG----GLRILLAEDNQVNRQVASTHLEKFGCTVVSAKNGAEALERFC-QQPF 930
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD QMP MDG +AT IR E G G PI+AMTA
Sbjct: 931 DLVLMDCQMPVMDGLEATRAIRQRE-----------------GEQGSDSTPIIAMTAFSS 973
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLY 1213
+ + C GMD + KPF E LY
Sbjct: 974 EQNLADCRAAGMDGKIGKPFRPEALY 999
Score = 43.1 bits (100), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 24/148 (16%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN----FDACFMDL 1134
L+G + L+VDD + NR + + G D G A+ KL FD D+
Sbjct: 736 LRGLRALIVDDKVTNRVILQRFCDAWGIYHQSADSGVNALAKLELAAEQGKAFDCVLSDM 795
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
MP+MDG + QI N L + +L +T+ + ++
Sbjct: 796 MMPDMDGVEVARQIH--------------------ANAQLGDLKLLLITSYTGRGLRDKA 835
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
G D + KP +L+ A+ + +
Sbjct: 836 RLAGFDRLLPKPIGRRELHDALEQVLLG 863
>gi|389875495|ref|YP_006373230.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
gi|388530450|gb|AFK55646.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
Length = 1552
Score = 290 bits (741), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 208/615 (33%), Positives = 303/615 (49%), Gaps = 108/615 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A+ AKS FLA +SHEIRTPMNGV+GM +L+ T+L Q +A+T S + L+ +I
Sbjct: 902 AETANQAKSDFLANMSHEIRTPMNGVMGMTHILLGTDLTPEQRGHAETVRESAEALLGVI 961
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
+D+LD +K+E+ R+E E +PF L DVL+ V ++ + +A KGIE+A Y + V +GD
Sbjct: 962 DDILDISKLEAERVELEHIPFVLGDVLEGVAAILAPRARDKGIEIACYPDEDAGGVWVGD 1021
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P R RQI+ NL GN++KFT+ +GH+ V + LN
Sbjct: 1022 PTRLRQILLNLAGNAVKFTE-RGHVTVGASVG---------------AGLND-------- 1057
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
RW L V DTG+G+ E R+F F
Sbjct: 1058 ----------GRW---------------------HLRFEVRDTGIGMTAEQAGRLFRKFS 1086
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD+S +R +GGTG+GL+IS+ L++LMGG I S G GS F F V G L P
Sbjct: 1087 QADASITRRFGGTGLGLAISQKLMDLMGGSITVESRIGEGSVFRFDVVLERGTEAPLRPT 1146
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
+ + D RG+RAL++DD ++ + +HL +L M V A+ + + S + + S
Sbjct: 1147 --EEIGD--HLRGMRALIVDDLAVNRRILAHHLVQLGMIVDEASDVASSLSVIEEQRRRS 1202
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
+ + LV+ D ++ G+ L L+ G+ ++ L A+ + D+ L
Sbjct: 1203 QM--IDLVITDYNLGGMN-GVELAEWLRMNSHFRGV-------RLILAASELPTVDK--L 1250
Query: 1035 KS-DGIVTLLTKPLR-------LSVLIGCFQED--PESSKKLQQKRKKPSLGHLLKGKQI 1084
+S D +V KP+R L+ G E+ P SS Q++ G+ +
Sbjct: 1251 QSFDAVV---AKPIRGRELMVALARAFGIRDEETAPSSSAATQERALSGD------GRHV 1301
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+V+DN VN+ VA L G +VT V G AV FD FMD+QMP MDG +A
Sbjct: 1302 LLVEDNAVNQTVARTILSDAGYVVTIVGDGEQAVSACATTQ-FDIVFMDVQMPVMDGMEA 1360
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T +IR E G V I+AMTA+ + E+ + GMDD+V
Sbjct: 1361 TRRIRAAE-----------------AREGRDRVAIVAMTANAMSGMREEYLAVGMDDFVP 1403
Query: 1205 KPFEDEQLYTAVARF 1219
KPF QL A AR+
Sbjct: 1404 KPFAAPQLLEAAARW 1418
>gi|375146975|ref|YP_005009416.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
gi|361061021|gb|AEW00013.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
Length = 1019
Score = 289 bits (740), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 201/635 (31%), Positives = 311/635 (48%), Gaps = 108/635 (17%)
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
AAI RI + ++M K AEAA AKS F+A +SHE+RTPMNG++G +++ T+L
Sbjct: 481 AAIERIQMAQ----QLMAAKENAEAASKAKSDFMANMSHELRTPMNGIIGFTDLVLTTDL 536
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
Q DY + S +L+++IND+LD +KIE+G+L + VPF L ++++ + + S KA
Sbjct: 537 QKTQRDYLKNVSKSAYNLLNIINDILDFSKIEAGKLLIDEVPFDLSELIEETVEILSIKA 596
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+KG+E+ + +P +IGDP R +Q++TNL+GN++KFT + G IFV V
Sbjct: 597 EEKGLEVVCSIDPELPSQLIGDPLRIKQVLTNLMGNAVKFTAE-GEIFVKVQP------- 648
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
N V + + +Y + +
Sbjct: 649 ------------NGVHNCNGNLYMDID--------------------------------I 664
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
TV+DTG+GIP + IF F QAD+ST+R +GGTG+GL+IS+ LVELMGG + S PG
Sbjct: 665 TVKDTGIGIPDDKLHAIFESFTQADNSTTRKFGGTGLGLTISKSLVELMGGRLAVGSIPG 724
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG--LR-ALVIDDKSIRAEVTRYHLQR 949
GS+F+F SL K P V+ + LR LV+DD + R
Sbjct: 725 NGSSFTF----------SLALKVVNGAPPVTFYSKPLLREVLVVDDNETNCNLMRGIFDY 774
Query: 950 LEMAVHVANSMQLACSYLSDTCSTS-----VLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004
L + V S A S ++ + + ++ + ++D KEI +L
Sbjct: 775 LHIPCKVCYSGAEALSVITQSIRDNEPFDLIITDHQMPVMDGITLVKEIKKLL------- 827
Query: 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSK 1064
KG E P I +L++ + E + GI L+KP++L L +
Sbjct: 828 --KGQTE-----PFILMLSSLEKTLYQSEAEKTGINKFLSKPVKLHELNNILSAIFNKAF 880
Query: 1065 KLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
K P + + ++LVV+D +N + L+K G V G+ A+ +
Sbjct: 881 DKGPKESIPVIETMENITRVLVVEDEPMNMLLISEVLRKMGVEVLKAGNGKEAL-VMVAV 939
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
H D FMD+ MP MDGF AT QIR GL +PI+A+TA
Sbjct: 940 HAPDLVFMDVNMPVMDGFAATRQIRT-------------------STTGLSKIPIIALTA 980
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
D ++ E+C++ GM+DY+SKPF+ E++Y+ V ++
Sbjct: 981 DAMEEDKERCLESGMNDYISKPFKLEEIYSVVRKY 1015
>gi|336309925|ref|ZP_08564898.1| sensory box histidine kinase/response regulator [Shewanella sp.
HN-41]
gi|335866485|gb|EGM71463.1| sensory box histidine kinase/response regulator [Shewanella sp.
HN-41]
Length = 1765
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 197/622 (31%), Positives = 311/622 (50%), Gaps = 109/622 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K A+AA AK FLA +SHEIRTPMN ++GM Q+ + TELD Q +Y + +
Sbjct: 1025 ELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERA 1084
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+S+IND+LD +KIE+G+L+ E VPF L +L+++ +FS KA K +EL V+
Sbjct: 1085 SQSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPN 1144
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP + GD R Q++ NL+ N+IKFT+ +G + +S LN
Sbjct: 1145 VPRHLFGDSLRLGQVLINLMNNAIKFTE-RGEVLLS---------------------LNL 1182
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V+ ++D V L +V D+G+G+ E Q
Sbjct: 1183 VEQQNDDV----------------------------------TLRFSVRDSGIGLTDEQQ 1208
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--T 904
++F F QAD+ST+R YGGTG+GL+I + LVELMGG IG S+ G GSTF FTV +
Sbjct: 1209 AKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGSIGVESQFGHGSTFYFTVKLQIS 1268
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
G++ + E G+ LV+DD + ++ R L+ + V S A
Sbjct: 1269 SGQKLVIG----------QELEGMSVLVVDDNATARDIMRTTLEGMGFLVDTVRSGDEAV 1318
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
+ C+ A+ LID + + + GL + QQ ++ P+I +++
Sbjct: 1319 ----NRCTQR---DYAVALIDWKMPNLD-GLDTARQILQQ--------AKTPPRILMVSA 1362
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK----PSLGHLLK 1080
++ +++ G+ ++KP+ S L+ + L +R P L LK
Sbjct: 1363 HANQEFLTQIEQLGLAGYISKPISASRLLDGIMNALGRAGILPVRRHNEALDPQLLLPLK 1422
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
GK+IL+V+DN +N VA L++ G I++ G+ A+DKL +FD MD QMP MD
Sbjct: 1423 GKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLM-QQSFDLVLMDCQMPVMD 1481
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G+QAT +R L +P++AMTA+ + E C++ GM+
Sbjct: 1482 GYQATKALRQRPE--------------------LAELPVIAMTANAMAGDREMCIRAGMN 1521
Query: 1201 DYVSKPFEDEQLYTAVARFFMS 1222
D+++KP E LY + ++ +
Sbjct: 1522 DHIAKPIEVNILYQTLLKYLAA 1543
>gi|440801432|gb|ELR22452.1| hybrid signal transduction histidine kinase j, putative [Acanthamoeba
castellanii str. Neff]
Length = 1342
Score = 289 bits (739), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 207/634 (32%), Positives = 307/634 (48%), Gaps = 106/634 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EM+ A A A+ AK++F+A +SHEIRTPMNG++GM ++ +DT+L++ Q DY + H+S
Sbjct: 789 EMLIKTALANEANRAKTEFMANMSHEIRTPMNGIIGMTELALDTQLNSEQRDYLKLVHSS 848
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+++IND+LD +KIE+G+L+ E + LH+ L + L + KA++KGIEL +
Sbjct: 849 ALGLLTIINDILDFSKIEAGKLDIEHIDMSLHETLGDTLKALALKAHEKGIELLSDIEPT 908
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P+ ++GDP R RQ+I NLVGN+IKFT +G + +SV +
Sbjct: 909 LPDKLVGDPVRLRQVIINLVGNAIKFTS-QGEVVLSVKMQ-------------------- 947
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ K+D V L V DTG+GIP +
Sbjct: 948 -ERKADAVV----------------------------------LHFAVRDTGIGIPPDKL 972
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
IF F QAD S +R YGGTG+GL+IS LV+LM G++ S PG GS F FT TF
Sbjct: 973 SVIFEAFSQADGSITRKYGGTGLGLTISTRLVQLMQGKLTAESNPGKGSLFHFTATFGLA 1032
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
S P+ + + G R LV D + L M V ++++ A
Sbjct: 1033 REESSLPRERS----TAVLGGRRVLVADANETSRRILSQTLLNWRMEPIVVDTVREASQL 1088
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
++ S V VL+ + D GL + + L++ I ++A S
Sbjct: 1089 YAE--SVMVQRPFEYVLLVSQIPDDLEGLTIAQFSES------LQVVTKETTI-IMALSP 1139
Query: 1027 SETDRDEL---KSDGIVTLLTKPLRLSVLIGCFQE-----DPESS----KKLQQKRKKPS 1074
+ T RD + ++KP+ S L+G + +P SS R P
Sbjct: 1140 TATKRDLVSWHSCPPTCAYISKPVGQSELLGALLKPFDLLEPTSSLLPGGPGSAHRGSPH 1199
Query: 1075 LGHLLKG--------KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN 1126
G ++IL+ +DN+VN+++A L++ G VT D GR AVD + +
Sbjct: 1200 ASDGRAGSHGGEKPRQRILLAEDNVVNQKLAIRLLERFGYSVTLADNGRKAVD-IAKTQS 1258
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
FD MD+QMPEM GF+AT +IR LE++ G H PI+AMTA
Sbjct: 1259 FDLILMDVQMPEMGGFEATAKIRGLESK----------------QAGRGHTPIVAMTAHA 1302
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
IQ E+C++ GMD Y+SKP E L + F
Sbjct: 1303 IQGYREKCLEGGMDGYISKPIHAESLKQTIESFL 1336
>gi|374996937|ref|YP_004972436.1| signal transduction histidine kinase [Desulfosporosinus orientis DSM
765]
gi|357215303|gb|AET69921.1| signal transduction histidine kinase [Desulfosporosinus orientis DSM
765]
Length = 1261
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 221/703 (31%), Positives = 338/703 (48%), Gaps = 122/703 (17%)
Query: 532 MYGPDVTDTGLLRVSNLDFGDPSRKHEMH--CRFKQKPPVPWTAINASIGVVVITLLVGH 589
+Y D+ GL V+N+ P + + R K P V W + IG V+ G
Sbjct: 457 VYSQDLNSMGLFNVNNM----PMVGEDFYTEVRLKADPNV-WFSF---IGQVIKKDEDGK 508
Query: 590 I--FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
I F + I + + E+ AE A AKSQFLA +SHEIRTPMN ++G+ +L
Sbjct: 509 IRRFIGVLQNITERKRTEEELKRAMEAAEEASQAKSQFLANMSHEIRTPMNAIMGLAHLL 568
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
++L +Q +Y + K L+ +INDVLD +KIE+G+LE E + F+L VL+NV +L
Sbjct: 569 AQSDLKESQQNYVAKIEGASKTLLRIINDVLDFSKIEAGKLEIENIKFNLDKVLENVANL 628
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
+S A +KGI+L + VP+V+IGDP R Q+++NL+ N+IKFT
Sbjct: 629 YSISAAEKGIDLNFDTGEGVPDVLIGDPLRLEQVLSNLITNAIKFTN------------- 675
Query: 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR 827
R +V+V KVL ++ + V
Sbjct: 676 --RGEVNVSVKVLGENNDEV---------------------------------------- 693
Query: 828 IKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF 887
KL TV DTG+GI E R+F F QAD S +R YGGTG+GL+IS+ LVELM GEI
Sbjct: 694 -KLSFTVSDTGIGITKEHIGRLFRAFTQADGSMTRKYGGTGLGLTISKQLVELMNGEISV 752
Query: 888 VSEPGTGSTFSFTVTFTEGERNSLD---PKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR 944
S G G++F F V F +LD P Y PD+ +G +AL+ID +
Sbjct: 753 ESVYGEGTSFHFIVHF----HKALDLKKPSCSNY-PDL---QGKKALIIDHNKTSLTILE 804
Query: 945 YHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004
L+ + V N A L C L++ID ++ E+ + Y +
Sbjct: 805 RMLRSFSLEVTALNDPFEALERLHREC-------FDLLVIDFNL--PELPGIEFY----K 851
Query: 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSK 1064
R +I+ LPK ++ ET ++K G+ L KP+ S++ +
Sbjct: 852 RIIANPDIA--LPKTIFVSAIGRETHYHQVKQLGVRNFLVKPINQSLMFDAIMNALNGTA 909
Query: 1065 KLQ------QKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
Q + + G L K++LVV+DN +N+ VA+ L++ G +V+ + G A+
Sbjct: 910 LHQGEVIHDEANSRKHRGE-LADKRVLVVEDNDINQLVAKDMLEQAGMLVSIANNGEEAI 968
Query: 1119 DKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
K + F A MD+QMP MDG++AT +R SS+E+ P
Sbjct: 969 -KYVHANKFAAVLMDVQMPVMDGYKATEILR-----------KTYSSSEL---------P 1007
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221
I+AMTA+ ++ E+ + GM+DY+SKP + +L+ + ++ +
Sbjct: 1008 IIAMTANALRGDRERSIAAGMNDYISKPIDPNRLFDTLEKWLL 1050
>gi|308050680|ref|YP_003914246.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
gi|307632870|gb|ADN77172.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
Length = 1756
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 198/619 (31%), Positives = 307/619 (49%), Gaps = 106/619 (17%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
+ + K A+AA AK+ FLA +SHEIRTPMN ++GM Q+ + T+L Q DY + ++
Sbjct: 1025 LRQAKEAADAASKAKTDFLANMSHEIRTPMNAIIGMTQLCLQTDLPPRQADYLRKIDSAS 1084
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +INDVLD +KIE+GRLE E PF L ++L+ + LF+ +A +KG+EL V V
Sbjct: 1085 QSLLGIINDVLDYSKIEAGRLELEQEPFALDELLEQLSDLFAVRAKEKGVELLFAVEPEV 1144
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P + GD R QI+ NL+ N+IKFT D G + +++
Sbjct: 1145 PARLNGDMLRLGQILINLLSNAIKFT-DHGEVVLAIR----------------------- 1180
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
L G P G+ +L +V DTG+G+ E Q
Sbjct: 1181 ---------QLDGAPP----------------------GQTRLTFSVRDTGIGMSPEQQA 1209
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R+F F QADSST+R YGGTG+GL+IS+ LV LMGG+I S G GSTF F++ E
Sbjct: 1210 RLFQSFSQADSSTTRKYGGTGLGLAISQRLVSLMGGQIQVNSAAGAGSTFHFSIELALPE 1269
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
Q P++ E G + L++DD E+ +L V A+S + A + L
Sbjct: 1270 --------QPPQPELFELEGRQVLLVDDNDTALEILERNLSAFGFDVIPAHSAEQALALL 1321
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+ L + LV+ D D+ K GL L +KQQ N + +++
Sbjct: 1322 PE------LSDMVLVITDYDM-PKMNGLELAEAMKQQ--------GHNTAMVLMISAYGD 1366
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP------SLGHLLKG 1081
E + + + GI LL+KP S L+ + + R++ + +
Sbjct: 1367 EALQQQAEQTGIGALLSKPANPSRLLDTILSLLDQRHETTPVRRRAHWQLDDTQRSAIAN 1426
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K++L+V+DN VN+ VA L++ G V+ + G A++KL +D MD QMP MDG
Sbjct: 1427 KRVLLVEDNQVNQEVACEFLRQLGLRVSVAEHGGVALEKLK-SGEYDLVLMDCQMPVMDG 1485
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+QAT IR +++N + P++AMTA+ +Q E+C+ GM++
Sbjct: 1486 YQATRAIR---DQLNMTL------------------PVVAMTANAMQEDREKCLAAGMNE 1524
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
+++KP + QL+ + R+
Sbjct: 1525 HIAKPIDLSQLHRVLWRYL 1543
>gi|254410456|ref|ZP_05024235.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182662|gb|EDX77647.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 2020
Score = 288 bits (736), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 218/682 (31%), Positives = 327/682 (47%), Gaps = 85/682 (12%)
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
RF+Q + A V I L + R ++ + + K AE A+ A
Sbjct: 1251 RFRQWSDDEIELLEAVAAQVGIALAQAQLLEQEKQRREELTLKNLALHKAKREAEVANRA 1310
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+FLA +SHEIRTPMN V+GM +L+DTEL + Q D+A T +SG+ L+++IND+LD +
Sbjct: 1311 KSEFLAMMSHEIRTPMNAVIGMAGLLLDTELTSQQQDFANTISSSGEALLTIINDILDFS 1370
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD--------RVPEVVIG 733
KIESG+LE E PF +H ++ L L +S+A KG+ELA + + P V+G
Sbjct: 1371 KIESGKLELEEHPFDVHVCIEEALDLVASQATAKGLELAYLIEPFGFAQGQPQTPATVVG 1430
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFV-----SVHLADDVRSKVDVKDKVLEKSLNSVQ 788
D R RQI+ NL+ N++KFT ++G + V ++ + +
Sbjct: 1431 DITRLRQILVNLLSNAVKFT-ERGEVVVSVISRALSGEAGGAEGAEGAEGAEGAEGAEGA 1489
Query: 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
+ PV + L+ T E L TV DTG+GIP + R
Sbjct: 1490 GGAGGAEGAGGAVPV----------EHLEAEQTYE------LQFTVRDTGIGIPRDRMNR 1533
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
+F PF Q D+S +R YGGTG+GL+IS+ L E MGG + SE G GSTF FT+ + +
Sbjct: 1534 LFKPFSQVDASMTRNYGGTGLGLAISKRLSERMGGRLWAESEVGKGSTFYFTIV-VKSDP 1592
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
NS+ + P E RG R LV+DD + ++ Q M V A S + A ++L+
Sbjct: 1593 NSVTAELDTPQP---ELRGKRLLVVDDNATNRQIITLQAQSWGMEVTTAASGEQALNWLA 1649
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
D+ L ++D + + + GL L ++ L + LP + +L++ +
Sbjct: 1650 DS------EPFDLAVLDWQMPEMD-GLTLALQIQ------ALPNNEQLP-LVMLSSVGRQ 1695
Query: 1029 TDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK------ 1082
T LTKP++ S L F L ++R G L G
Sbjct: 1696 TPYQPDDMPNFAAFLTKPIKQSQLYNIF------VTILGRRRISVRPGDRLSGTLEAEFA 1749
Query: 1083 -----QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
IL+V+D VN++VA L++ G + G+ A++ L ++ FMD+QMP
Sbjct: 1750 QRLPLSILLVEDVAVNQKVARQMLQRLGYRADVANNGQEALESLR-RKSYQVVFMDVQMP 1808
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EMDG +AT +IR AE W I+AMTA +Q EQC++
Sbjct: 1809 EMDGLEATRRIR----------------AEWSSACQPW---IIAMTAHAMQGDREQCLQV 1849
Query: 1198 GMDDYVSKPFEDEQLYTAVARF 1219
GM+DY+SKP E L A+ +
Sbjct: 1850 GMNDYISKPIRPEALVQALTTY 1871
>gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens
CN-32]
Length = 1771
Score = 288 bits (736), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 192/620 (30%), Positives = 311/620 (50%), Gaps = 109/620 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K A+AA AK FLA +SHEIRTPMN ++GM Q+ + T LD Q +Y + +
Sbjct: 1025 ELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERA 1084
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+S+IND+LD +KIE+G+L+ + VPF L +L+++ +FS K K +EL V+
Sbjct: 1085 SQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPN 1144
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP + GD R Q++ NL+ N+IKFT+ +G + +S++L
Sbjct: 1145 VPRHLFGDSLRLGQVLINLMNNAIKFTE-RGEVLLSINL--------------------- 1182
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V+ ++D V L +V D+G+G+ E Q
Sbjct: 1183 VEQQNDDV----------------------------------TLRFSVRDSGIGLTDEQQ 1208
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--T 904
++F F QAD+ST+R YGGTG+GL+I + LVELMGG IG S+ G GSTF FTV +
Sbjct: 1209 AKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYFTVKLQIS 1268
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
G++ ++ E G+ LV+DD + ++ R L+ + V + + A
Sbjct: 1269 SGQKLTVG----------QELEGMSVLVVDDNATARDIMRTALESMGFNVDTVRTGEEAV 1318
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
S C + + A+ LID + + GL ++QQ + P+I +++
Sbjct: 1319 S----RC---IQHEYAVALIDWKMPSMD-GLEAARQIQQQAKAA--------PRILMVSA 1362
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK----PSLGHLLK 1080
+ +++ G+ ++KP+ S L+ + L +R P L LK
Sbjct: 1363 HANHEFLTQIEQLGLAGYISKPISASRLLDGIMNALGRAGILPVRRHNEALDPQLLLPLK 1422
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
GK++L+V+DN +N VA L++ G I++ G+ A+DKL+ ++D MD QMP MD
Sbjct: 1423 GKRVLLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLS-QQSYDLVLMDCQMPVMD 1481
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G+QAT IR L H+P++AMTA+ + E C++ GM+
Sbjct: 1482 GYQATMAIRQRPE--------------------LAHLPVIAMTANAMAGDKEMCLRAGMN 1521
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
+++KP E LY + ++
Sbjct: 1522 GHIAKPIEVNILYQTLLKYL 1541
>gi|406895332|gb|EKD39927.1| hypothetical protein ACD_75C00243G0001 [uncultured bacterium]
Length = 713
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 207/627 (33%), Positives = 296/627 (47%), Gaps = 109/627 (17%)
Query: 599 AQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLD 658
+++EN E+ + K AE A+VAKSQFLA++SHEIRTPMNGV+G ML+ TELD Q D
Sbjct: 173 SEIENQTQELRKSKKAAEEANVAKSQFLASMSHEIRTPMNGVIGFTDMLLATELDEEQKD 232
Query: 659 YAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIE 718
+A T SG+ L+ LIND+LD +K+E+G++ E++ F +V L + K IE
Sbjct: 233 FALTIKRSGEALLGLINDILDFSKVEAGQMSLEYIDFDPEITAHDVCELIRPRVTGKPIE 292
Query: 719 LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778
+ + D +P + GDPGRFRQ++ NL+GN+ KFT+ +G + +S+ + + + + K
Sbjct: 293 VLCRIEDNLPANIKGDPGRFRQVLVNLLGNAAKFTE-QGELELSLEVMAETEETITLLAK 351
Query: 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTG 838
+ + + + K ++ E FK
Sbjct: 352 IRDTGIGIPEDKFSTIF---------------EAFK------------------------ 372
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
QAD ST+R YGGTG+GLSI R + LMGG I S G G+TF
Sbjct: 373 ----------------QADGSTTRKYGGTGLGLSICRRIAGLMGGRIWVESTLGRGTTFF 416
Query: 899 FTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
FT + S Q+ P G++ LV+DD E+ R L + M V
Sbjct: 417 FTSVM----KKSTSCTAQR--PPAENLGGVKILVVDDNRANNEILRGILGKAGMEVVTLL 470
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
A + L + QLA + D + LV Y L R L P
Sbjct: 471 DSTTAVAELIRAEKENRPFQLA-------ILDLLMPLVSGYDLATGIRTSSLAN----PS 519
Query: 1019 IFLLA-TSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ----------EDPESSKKLQ 1067
I LLA TS +E + K G LTKP R S+L+ E PE K +
Sbjct: 520 IPLLAYTSSTERVAQKCKEAGFTAFLTKPARRSLLLRTLSRILGPGNGAPEMPEEKKFVT 579
Query: 1068 QKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT-PPHN 1126
Q + L ++ IL+ +DN VN+++A L K G VT V G+AAV+ T P
Sbjct: 580 QYSVREELKQSIR---ILLAEDNPVNQKLAMMMLSKAGYQVTVVPNGKAAVETFTGTPDG 636
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
FD MD+QMPEMDG++AT QIR G +PI+AMTA+
Sbjct: 637 FDTILMDIQMPEMDGYEATRQIRR---------------------QGFREIPIIAMTANA 675
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLY 1213
++ E C GM+DY+ KP + E ++
Sbjct: 676 MKGDKELCFAAGMNDYIMKPIKREIVF 702
>gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
Length = 844
Score = 287 bits (734), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 193/618 (31%), Positives = 319/618 (51%), Gaps = 89/618 (14%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++ L + E A +AKS+FLA +SHE+RTPMNGV+GM +L+DTEL Q +Y + +S
Sbjct: 173 LVALNQKLEEATLAKSEFLANMSHEVRTPMNGVIGMTALLLDTELTDEQREYVEATRSSA 232
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
++++IND+LD +KIESG+L+ E PF LH ++ L L + KA +K ++LA V D +
Sbjct: 233 DAMLTIINDILDFSKIESGKLDLESHPFELHTCIEEALDLLAPKAAEKDLDLAYSVDDAI 292
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P++++GD R RQI+ NL+GN++KFT ++G +F+ V K K N
Sbjct: 293 PKILVGDVTRLRQILVNLIGNAVKFT-NEGEVFIQV--------------KPAPKHFND- 336
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
D+ ++++G D W L +V DTGVGIP++ Q
Sbjct: 337 ---RDRSASSITG---PDMWM---------------------LQFSVRDTGVGIPIDKQH 369
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R+F F Q D+ST+R YGGTG+GL+I + L ELMGG+I S+ G GSTF FT+
Sbjct: 370 RLFKSFQQVDASTTRHYGGTGLGLAICKKLSELMGGDIQVESDAGKGSTFHFTIQ-ARAT 428
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
+ + P WQQ P ++ G R L+++D + ++ + ++ M A + + A +
Sbjct: 429 ASVIPPAWQQIQPQLA---GKRVLIVEDNATNRQILSHRCRQWGMLPDEAANAEKALEMV 485
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
++ A++ + +D G+ L ++Q+ ++ N + LL++
Sbjct: 486 ANQKYYDA----AILDVQLPGFD---GIKLAQAIRQR-------LNGNSISLLLLSSVRL 531
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKG------ 1081
+D GI + KP+R S L+ S ++Q+++K P+L +
Sbjct: 532 RSDDTRAAELGITIFVHKPIRPSQLLQALYRG--LSLQIQREKKAPALPCMDSSFANRFP 589
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+IL+ DDN +N++V L++ G + G + L +D +D+QMPE+DG
Sbjct: 590 LRILLADDNPINQKVGLNVLRRLGYRADVANNGLEVLRALD-RQPYDIILLDVQMPELDG 648
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
F+ T IR E+ G+ ++AMT + + E+C+ GMDD
Sbjct: 649 FETTSSIR-------ERWPLGKRPR------------VVAMTGNALLGDREKCLDAGMDD 689
Query: 1202 YVSKPFEDEQLYTAVARF 1219
Y+SKP +L +A+ R+
Sbjct: 690 YISKPIRIGELQSALERW 707
>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
Length = 1702
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 205/611 (33%), Positives = 296/611 (48%), Gaps = 97/611 (15%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AEAA AKS F+A +SHEIRTPMNG++GM + +DTEL+A Q +Y +S L+
Sbjct: 1074 KEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELNAEQREYLTMVQSSAASLL 1133
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +KIE+GRLE + F L +L L + +++QKG+E+ + P+ +
Sbjct: 1134 TIINDILDFSKIEAGRLELDKSDFSLRTILYETLKTLAWRSHQKGLEIICDIIPDTPDHL 1193
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDPGR RQI+TNLVGN+IKFT + G + ++V
Sbjct: 1194 IGDPGRLRQIVTNLVGNAIKFTAE-GEVSLTV---------------------------- 1224
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
K+ D TN G + L +V DTG+GIP E IF
Sbjct: 1225 ----------------------KLEDITN-----GEVTLAFSVADTGIGIPAEKLHLIFE 1257
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD S +R YGGTG+GL+IS LVELMGG++ S PG GS F F F G+ +
Sbjct: 1258 AFSQADGSITRKYGGTGLGLTISTRLVELMGGKLKAESIPGKGSRFDFIAKFPLGQAPTE 1317
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+ K + + L+IDD V L ++ +S A L +
Sbjct: 1318 NSKIM--------LKDVNTLIIDDNKSTRRVLHQMLSEYGVSADTTDSQDSAFHMLREAA 1369
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
+ +D + K+ G ++ +KQ G I I L+ S D
Sbjct: 1370 MKK--QPYEYIFMDAQLNGKD-GFLVAEAIKQDPSFGQASI------IMLICGSGQRGD- 1419
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPES-SKKLQQ-KRKKPSLGHLLKGKQILVVDD 1089
E +S I L+KP+ ++ Q + K+LQQ R P + +IL+ +D
Sbjct: 1420 PENRSSVISGYLSKPVSPVEMLEVIQCSTKPLIKQLQQITRDTPQPAPI--QSEILLAED 1477
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
N+VN+R+A L++ G VT + G AV + +FD MD+QMP M GF+AT IR
Sbjct: 1478 NVVNQRLAIRLLERFGHKVTLAENGLQAV-AASEMKDFDLILMDVQMPHMGGFEATSTIR 1536
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
E +N+ H PI+AMTA +Q E+C+ GMDDY+SKP
Sbjct: 1537 IREKVMNK------------------HTPIIAMTAHALQKDKEKCLNAGMDDYLSKPINP 1578
Query: 1210 EQLYTAVARFF 1220
+QL + ++
Sbjct: 1579 DQLRAVIEKYL 1589
>gi|390958996|ref|YP_006422753.1| PAS domain-containing protein [Terriglobus roseus DSM 18391]
gi|390413914|gb|AFL89418.1| PAS domain S-box [Terriglobus roseus DSM 18391]
Length = 1042
Score = 286 bits (733), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 209/649 (32%), Positives = 311/649 (47%), Gaps = 106/649 (16%)
Query: 576 ASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRT 635
A + V I + +F A ++ + Q + M E + AEAA+ AKS+FLA +SHEIRT
Sbjct: 349 AEMAVSAIVVGEKKMFAAFVHDVTQRKLAERSMEEARITAEAANRAKSEFLANMSHEIRT 408
Query: 636 PMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPF 695
P+NGV+GM + ++TE+ Q +Y T S L+++IND+LD +KIE+G+++ E + F
Sbjct: 409 PLNGVIGMTDLALETEMSREQREYMTTVKFSADSLLTVINDILDFSKIEAGKVDLETISF 468
Query: 696 HLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQD 755
+ + ++ L + +A++KG+EL VS +PEVV+GDPGR RQI+ NLVGN+IKFT
Sbjct: 469 DIRECVETTLKTLALRADEKGLELLCDVSADLPEVVLGDPGRLRQIVVNLVGNAIKFT-G 527
Query: 756 KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKM 815
G + + V LAD D++Y +S
Sbjct: 528 SGEVSLRVGLADP-------------------GEGPDQMYFNVS---------------- 552
Query: 816 LDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISR 875
DTG+GI E +F F QAD+ST+R YGGTG+GL+ISR
Sbjct: 553 --------------------DTGIGISPEKLESVFASFSQADTSTTRQYGGTGLGLTISR 592
Query: 876 CLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE-----FRGLRA 930
LVELMGG I S PG GS F FTV SL P P V G++
Sbjct: 593 RLVELMGGRIWCESTPGKGSQFHFTV--------SLPPVTDATAPVVVPKPLPLLAGVKV 644
Query: 931 LVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD 990
L++DD + L+ M V A A + L +L L D
Sbjct: 645 LIVDDNKTNRRILEGLLRIWGMEVASAPEGDTALAMLHAAGLEGSPYRLLLT-------D 697
Query: 991 KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR-- 1048
+ + +M+ QQ ++ + S LP + +L++ D + + GI L KP+R
Sbjct: 698 MHMPKMDGFMVVQQMKQ---DTSLALPTVMMLSSGGHHGDANRCEQLGISAYLLKPVRRQ 754
Query: 1049 -----LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKK 1103
++ +G + + + Q L ++ IL+ +DN VN+++A L+K
Sbjct: 755 ELQDAIARALGSSMDGIKDKSLITQSTLVADL-PAVRSLHILLAEDNEVNQKLAVRLLQK 813
Query: 1104 HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163
G V + GR AV+ + +D MD+QMPEMDG QAT IR E ++A
Sbjct: 814 RGHSVVVANNGREAVEA-SESRKYDLVLMDVQMPEMDGIQATIAIRAREAGSGARLA--- 869
Query: 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
I+AMTA V++ E+CM MD Y+SKP ++L
Sbjct: 870 ---------------IVAMTALVMKGDRERCMAADMDGYLSKPIRPQEL 903
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 28/151 (18%)
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL------TPPHNFDACF 1131
LL G ++L+VDDN NRR+ EG L+ G V G A+ L P+
Sbjct: 638 LLAGVKVLIVDDNKTNRRILEGLLRIWGMEVASAPEGDTALAMLHAAGLEGSPYRL--LL 695
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
D+ MP+MDGF Q++ + L ++ +++
Sbjct: 696 TDMHMPKMDGFMVVQQMKQ--------------------DTSLALPTVMMLSSGGHHGDA 735
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+C + G+ Y+ KP ++L A+AR S
Sbjct: 736 NRCEQLGISAYLLKPVRRQELQDAIARALGS 766
>gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
Length = 1135
Score = 286 bits (733), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 205/619 (33%), Positives = 301/619 (48%), Gaps = 109/619 (17%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
+ E K AEAA+ AKS FLA +SHEIRTP+N ++GM +++MDT+L AQ DY + SG
Sbjct: 415 LREAKDAAEAANRAKSDFLANMSHEIRTPLNAIIGMTELVMDTDLKVAQRDYLRMVLESG 474
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+GRL + PF L D L + + S++A++K +ELA +VS V
Sbjct: 475 ESLLGIINDILDFSKIEAGRLHVDEQPFRLRDSLGDTMKSLSNRAHRKKLELAFHVSPDV 534
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P+ V GD R RQ+I NL+GN++KFT+ +G + + V +
Sbjct: 535 PDEVRGDAVRVRQVIINLLGNALKFTE-RGEVVLDVSV---------------------- 571
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
+ T EQ + L V+DTG+GI +
Sbjct: 572 ------------------------------ESRTAEQ---VTLHFKVQDTGIGIAKDKFE 598
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
IF F QADSST+R YGGTG+GL+IS LVELM G+I SE G GSTF FT+
Sbjct: 599 SIFEAFEQADSSTTRRYGGTGLGLAISARLVELMQGKIWVESEVGQGSTFHFTLNLGVEA 658
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
S+ P Q+ + GLR L++DD + M +A A L
Sbjct: 659 EGSVQPLAQE-----PQLHGLRVLIVDDNQTNRRILEELTLLWGMRPRIAAGAIEARREL 713
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP--KIFLLATS 1025
+ L++ D + E G L ++ LE N+P +I +L +
Sbjct: 714 QHAIDQG--EPIRLIITDAQM-PGEDGFSLTASIR------SLE---NMPAVEILMLTSG 761
Query: 1026 ISETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPE----SSKKLQQKRKKPSLGH 1077
D + GI L KP++ S L +G + P +S +R S
Sbjct: 762 DRLEDLSRCQQLGIAGYLIKPVKQSELYNSIVGIMGQAPRAVPMASAMAVPERSANS--- 818
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
++IL+ +D++ N+++A G L++ G V G A+++ +FD MD+QMP
Sbjct: 819 ----RRILLAEDSLANQKLALGLLERWGHRVVVASNGIEAIERYR-SESFDLILMDVQMP 873
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
E+DG +AT IR +E E H+PI+AMTA +Q EQC+K
Sbjct: 874 ELDGNEATMAIREIERRTGE------------------HIPIVAMTAHALQGDREQCLKA 915
Query: 1198 GMDDYVSKPFEDEQLYTAV 1216
GMDDY+ KP QL+ +
Sbjct: 916 GMDDYLMKPIRARQLFQMI 934
>gi|411011072|ref|ZP_11387401.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas aquariorum AAK1]
Length = 886
Score = 286 bits (733), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 215/613 (35%), Positives = 304/613 (49%), Gaps = 103/613 (16%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE+A AKS+FLA +SHEIRTPMN +LGM + + T LD QLDY + + L+ +I
Sbjct: 151 AESATRAKSEFLANMSHEIRTPMNAILGMSHLALQTRLDPQQLDYVSKIQRAAQHLLGII 210
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+G+L+ E + F L VL+N+ +L KA KGIEL V ++ ++ GD
Sbjct: 211 NDILDFSKIEAGKLDLERIEFDLDHVLENLATLVGEKAEAKGIELLFEVDHQLDTLLYGD 270
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P R QI+ N N++KFT ++G I VK + LEK V
Sbjct: 271 PLRLGQILINYANNAVKFT-EQGEIL--------------VKVRCLEKLPQEV------- 308
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
L +V+DTG+G+ E Q R+F F
Sbjct: 309 ----------------------------------LLHCSVQDTGIGMSQEQQQRLFQSFQ 334
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSST+R YGGTG+GL+I R L LMGGE+G SEPG GSTF FT G R S
Sbjct: 335 QADSSTTRKYGGTGLGLAICRKLAGLMGGEVGVQSEPGQGSTFWFTARLGRGRRRS---- 390
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
+Y+P + + RG R LV DD + + L+ + V A S Q A ++D
Sbjct: 391 --RYLPSL-DLRGRRMLVADDSASARTILAALLRGMSFVVDTAESGQQALQMIADAEQQG 447
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
+VL+D W + GL ++ RR R ++ + E R E
Sbjct: 448 T--PYEVVLLD---W-RMPGL---DGIETGRRLIARGAGRRPYRVMVTGYGREEIFR-EA 497
Query: 1035 KSDGIVTLLTKPLRLSVL----IGCF-QEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089
+ G +L KP+ SVL IG F Q+ S K Q + G +IL+ +D
Sbjct: 498 DAAGFDRVLVKPVCASVLFDTVIGLFGQQAATLSFKHQATHH-----YRFDGLRILLAED 552
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
N +N++VA L+ GA V+ G A+D T +D MD+QMP MDG AT Q+R
Sbjct: 553 NELNQQVALELLQAVGAKVSVASNGAIALDMATKA-PYDLILMDMQMPVMDGLAATRQLR 611
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
+Q +G+ H+PILAMTA+V+ E+C+ GMDD+++KP +
Sbjct: 612 -------QQEGTGQ------------HIPILAMTANVMAGDRERCLAAGMDDHIAKPIDP 652
Query: 1210 EQLYTAVARFFMS 1222
++LY A+ R+ S
Sbjct: 653 DKLYDALQRWATS 665
>gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4]
gi|122126078|sp|Q54YZ9.2|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J
gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4]
Length = 2062
Score = 286 bits (733), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 205/613 (33%), Positives = 295/613 (48%), Gaps = 105/613 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AEAA AKS F+A +SHEIRTPMNG++GM + +DTEL A Q +Y +S L+
Sbjct: 1337 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAGSLL 1396
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +KIE+GRLE + F L L + L S +A+QK IEL ++ VP+ +
Sbjct: 1397 TIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPDSL 1456
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDPGR RQI+ NLVGN+IKFT + +VD+ KV EKSL+
Sbjct: 1457 IGDPGRLRQIVNNLVGNAIKFTS---------------QGEVDLVVKV-EKSLS------ 1494
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
G + L +V DTG+GIP + IF
Sbjct: 1495 ---------------------------------CGEVVLKFSVIDTGIGIPKDKLHLIFE 1521
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD S +R YGGTG+GL+IS LVELM G++ VS+ G GSTF FT F
Sbjct: 1522 AFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFTAQF-------- 1573
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
P +P + + L++DD +V + L + V+N+ Q A + +
Sbjct: 1574 -PTSPNQLPLTEKLNDVHTLIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKAT 1632
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL----PKIFLLATSIS 1027
T+ + V D ++G L M+ + +N+ KI +L +
Sbjct: 1633 KTTKPFEFIFV-------DAQLGTSLIDMM----------VEKNMNHCKTKIIMLISGGG 1675
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
+ + S+ I L+KP+ S + + + +Q KK L + G IL+
Sbjct: 1676 QRGYPDSSSNFITGYLSKPVSPSEIFDILTRQGITRQIPKQLCKKIQLTSEIFG-DILLA 1734
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN VN+R+A L+K G V + G AV + FD MD+QMP GF+AT Q
Sbjct: 1735 EDNAVNQRLAIRLLEKFGHRVQLAENGLQAVAS-SQLRKFDLILMDVQMPHCGGFEATAQ 1793
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR E+E H PI+AMTA + +C++ GMDDY+SKP
Sbjct: 1794 IRKREHEQG------------------IHTPIIAMTAHALARDRVKCLEAGMDDYISKPI 1835
Query: 1208 EDEQLYTAVARFF 1220
+QL + ++
Sbjct: 1836 NPDQLKAMIEKYL 1848
>gi|423199297|ref|ZP_17185880.1| hypothetical protein HMPREF1171_03912 [Aeromonas hydrophila SSU]
gi|404629292|gb|EKB26053.1| hypothetical protein HMPREF1171_03912 [Aeromonas hydrophila SSU]
Length = 886
Score = 286 bits (733), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 215/613 (35%), Positives = 303/613 (49%), Gaps = 103/613 (16%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE+A AKS+FLA +SHEIRTPMN +LGM + + T LD QLDY + + L+ +I
Sbjct: 151 AESATRAKSEFLANMSHEIRTPMNAILGMSHLALQTRLDPQQLDYVSKIQRAAQHLLGII 210
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+G+L+ E + F L VL+N+ +L KA KGIEL V ++ ++ GD
Sbjct: 211 NDILDFSKIEAGKLDLERIEFDLDHVLENLATLVGEKAEAKGIELLFEVDHQLDTLLYGD 270
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P R QI+ N N++KFT ++G I VK + LEK V
Sbjct: 271 PLRLGQILINYANNAVKFT-EQGEIL--------------VKVRCLEKLPQEV------- 308
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
L +V+DTG+G+ E Q R+F F
Sbjct: 309 ----------------------------------LLHCSVQDTGIGMSQEQQQRLFQSFQ 334
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSST+R YGGTG+GL+I R L LMGGE+G SEPG GSTF FT G R S
Sbjct: 335 QADSSTTRKYGGTGLGLAICRKLAGLMGGEVGVQSEPGQGSTFWFTARLGRGRRRS---- 390
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
+Y+P + + RG R LV DD + + L+ + V A S Q A ++D
Sbjct: 391 --RYLPSL-DLRGRRMLVADDSASARTILAALLRGMSFVVDTAESGQQALQMIADAEQQG 447
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
+VL+D W + GL ++ RR R ++ + E R E
Sbjct: 448 T--PYEVVLLD---W-RMPGL---DGIETGRRLIARGAGRRPYRVMVTGYGREEIFR-EA 497
Query: 1035 KSDGIVTLLTKPLRLSVL----IGCF-QEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089
+ G +L KP+ SVL IG F Q+ S K Q + G QIL+ +D
Sbjct: 498 DAAGFDRVLVKPVCASVLFDTVIGLFGQQAATLSFKHQATHH-----YRFDGLQILLAED 552
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
N +N++VA L+ GA V+ G A+D T +D MD+QMP MDG AT Q+R
Sbjct: 553 NELNQQVALELLQAVGAKVSVASNGAIALDMATKA-PYDLILMDMQMPVMDGLAATRQLR 611
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
+Q +G+ H+PILAMTA+V+ E+C+ GMDD+++KP +
Sbjct: 612 -------QQEGTGQ------------HIPILAMTANVMAGDRERCLAAGMDDHIAKPIDP 652
Query: 1210 EQLYTAVARFFMS 1222
++LY + R+ S
Sbjct: 653 DKLYDVLQRWATS 665
>gi|374311111|ref|YP_005057541.1| multi-sensor hybrid histidine kinase [Granulicella mallensis
MP5ACTX8]
gi|358753121|gb|AEU36511.1| multi-sensor hybrid histidine kinase [Granulicella mallensis
MP5ACTX8]
Length = 931
Score = 286 bits (732), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 214/662 (32%), Positives = 326/662 (49%), Gaps = 115/662 (17%)
Query: 576 ASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKAR-------AEAADVAKSQFLAT 628
A +G+V++T ++ + ++ E Y M+E +A AEA+ AKS+FLA
Sbjct: 234 ALLGIVILTSVLDRRYSLQAVQLELSEQRYR-MIEAEAAGRERVRAAEASSQAKSEFLAN 292
Query: 629 VSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRL 688
+SHEIRTP+NG++GM + ++TEL Q DY +T SG L+++IND+LD +KIE+G++
Sbjct: 293 MSHEIRTPLNGIIGMTDLALETELTQEQRDYLETVKLSGDALLNVINDILDFSKIEAGKI 352
Query: 689 EPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGN 748
E E + F+L + ++ L + +A++KG+EL VS + EVV GDPGR RQI+ N++GN
Sbjct: 353 ELEEIDFNLCNCIEGTLKTLALRADEKGLELLCDVSPHIAEVVSGDPGRLRQILLNVIGN 412
Query: 749 SIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWK 808
+IKFT KG I S++ KSD +++ K
Sbjct: 413 AIKFT-SKGEI--------------------------SLKVKSD----------LIEEKK 435
Query: 809 SWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTG 868
S +F + DTG+GI E IF F QAD+ST+R +GGTG
Sbjct: 436 SILHF-------------------IITDTGIGIAPEKLTTIFDSFNQADTSTTREFGGTG 476
Query: 869 IGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGL 928
+GL+ISRCLVE+MGG++ SE G GS F FT+ + P ++ G+
Sbjct: 477 LGLTISRCLVEMMGGKLWVESEVGVGSQFHFTIPMKYVD----TPIEVDHIVQDKALNGV 532
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
+ L++DD + L R M V + + A + L + V LVL D +
Sbjct: 533 KVLIVDDNRTNRRILEGLLTRWGMVPTVVSGGEEALAKLHAAVQSGV--PYDLVLTDMQM 590
Query: 989 WDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR 1048
+ + G L +KQ+ +IS I +L + D GI L KP+R
Sbjct: 591 PNMD-GFGLVENIKQKA-----DIST--ATIMMLTSGSKRGDTARCAELGIAAYLLKPVR 642
Query: 1049 --------LSVLIGCFQEDPESSKKLQQK-RKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
L VL Q E + Q R++ S +L IL+ +DN +N+++A+
Sbjct: 643 QVELRQAILRVLQAKEQHGEEGNMVTQSTLREELSSAKVL---NILLAEDNAINQKLAKR 699
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
L+K G V+ + G+ A+ L +FD MD+QMPEMDG +AT +R E
Sbjct: 700 LLEKRGHKVSVAENGKEALAAL-EKSSFDLVLMDVQMPEMDGLEATRTLREREKLTG--- 755
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL------Y 1213
+H P++AMTA ++ E+C++ GMD Y+SKP + L Y
Sbjct: 756 ---------------FHCPVVAMTALAMKGDQERCLEAGMDGYLSKPISSQALDAMLEGY 800
Query: 1214 TA 1215
TA
Sbjct: 801 TA 802
>gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum]
Length = 2062
Score = 286 bits (732), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 205/613 (33%), Positives = 295/613 (48%), Gaps = 105/613 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AEAA AKS F+A +SHEIRTPMNG++GM + +DTEL A Q +Y +S L+
Sbjct: 1337 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAGSLL 1396
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +KIE+GRLE + F L L + L S +A+QK IEL ++ VP+ +
Sbjct: 1397 TIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPDSL 1456
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDPGR RQI+ NLVGN+IKFT + +VD+ KV EKSL+
Sbjct: 1457 IGDPGRLRQIVNNLVGNAIKFTS---------------QGEVDLVVKV-EKSLS------ 1494
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
G + L +V DTG+GIP + IF
Sbjct: 1495 ---------------------------------CGEVVLKFSVIDTGIGIPKDKLHLIFE 1521
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD S +R YGGTG+GL+IS LVELM G++ VS+ G GSTF FT F
Sbjct: 1522 AFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFTAQF-------- 1573
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
P +P + + L++DD +V + L + V+N+ Q A + +
Sbjct: 1574 -PTSPNQLPLTEKLNDVHTLIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKAT 1632
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL----PKIFLLATSIS 1027
T+ + V D ++G L M+ + +N+ KI +L +
Sbjct: 1633 KTTKPFEFIFV-------DAQLGTSLIDMM----------VEKNMNHCKTKIIMLISGGG 1675
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
+ + S+ I L+KP+ S + + + +Q KK L + G IL+
Sbjct: 1676 QRGYPDSSSNFITGYLSKPVSPSEIFDILTRQGITRQIPKQLCKKIQLTSEIFG-DILLA 1734
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN VN+R+A L+K G V + G AV + FD MD+QMP GF+AT Q
Sbjct: 1735 EDNAVNQRLAIRLLEKFGHRVQLAENGLQAVAS-SQLRKFDLILMDVQMPHCGGFEATAQ 1793
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR E+E H PI+AMTA + +C++ GMDDY+SKP
Sbjct: 1794 IRKREHEQG------------------IHTPIIAMTAHALARDRVKCLEAGMDDYISKPI 1835
Query: 1208 EDEQLYTAVARFF 1220
+QL + ++
Sbjct: 1836 NPDQLKAMIEKYL 1848
>gi|428218417|ref|YP_007102882.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427990199|gb|AFY70454.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 1669
Score = 286 bits (732), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 241/781 (30%), Positives = 364/781 (46%), Gaps = 123/781 (15%)
Query: 503 VEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMH-C 561
V++LL Q + + NVY N S P+ +L V G P+ +H C
Sbjct: 935 VQQLLSQ--DEAIVASNVYQDQNLS-PVLELAHRFNVKSILAVRTSYQGQPNGAIFLHQC 991
Query: 562 -RFKQKPPVPWT--------AINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELK 612
RF++ WT A++A +G I L + A + ++ + + K
Sbjct: 992 NRFRK-----WTQEEIELLEAVSAQVG---IALAQAQLLERATQQSYELGEKNTALQQAK 1043
Query: 613 ARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLIS 672
AEAA+ AKS+FLA +SHEIRTPMNGV+GM +L+DT L Q +Y + +SG+ L++
Sbjct: 1044 QDAEAANRAKSEFLAMMSHEIRTPMNGVIGMTGLLLDTPLSKVQREYVEIVRSSGESLLT 1103
Query: 673 LINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVI 732
+IND+LD +KIESG+LE E PF L D L + L KA +KG+ L + VP+ +
Sbjct: 1104 IINDILDFSKIESGKLELEEQPFDLLDCLAGSIDLLGPKAVEKGLVLNYLIEPDVPQQIT 1163
Query: 733 GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSD 792
GD R RQI+ NL+ N IKFT+ G + V+V L+ + S + + L + L+S ++D
Sbjct: 1164 GDVTRLRQILVNLIANGIKFTE-AGEVSVTVSLSSAMDSSSSLDGRSLSQ-LDSETDETD 1221
Query: 793 KVYNTLSGFPVVDRW----KSWEN-----FKMLDNTNTMEQLGRIK------------LL 831
+ F + W KS E+ D N +E + ++ +
Sbjct: 1222 E-------FNPANEWGQGAKSGESDQSGELASSDGGNNLEAIAAVEPEHNQSLAHSHTIQ 1274
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
V DTG+GIP E R+F F Q D+S +R YGGTG+GL IS+ L ELMGG + SE
Sbjct: 1275 FAVRDTGIGIPPEKMERLFKAFSQVDASITRQYGGTGLGLVISKRLCELMGGTMRVESEL 1334
Query: 892 GTGSTFSFTVTFT--EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQR 949
GS F FT++ T E S + Q + GL+AL++ D+ + + Q
Sbjct: 1335 DRGSIFYFTLSTTAIASESTSTSINYVQ-----KQLNGLKALIVADREDNRAILSTYTQA 1389
Query: 950 LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009
+ +S A S LSD + LV++D + + + LK +
Sbjct: 1390 WGIETKTTSSGAEALSMLSDRQN------FDLVILD-------LQMPVADELKLAQSMQS 1436
Query: 1010 LEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF------------- 1056
+ +P I L + +S T + + S+ + +L KPL S L
Sbjct: 1437 TVPGKPIPLILLTSVGVS-TKQLQQASNHRIAILAKPLSQSKLHQAIVRIIPDQNIDNVK 1495
Query: 1057 -----QEDPESSKKLQQKRKKPSLGHLLKGK-------------QILVVDDNMVNRRVAE 1098
QE S+ + R P+ + +IL+ +DN VN++VA
Sbjct: 1496 PWQRRQEVTTSTNRAAHDRPNPTTFRSSSNRLENVANLSNQIPIKILLAEDNAVNQKVAI 1555
Query: 1099 GALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ 1158
L+K G V G A++ L +D MD+QMPEMDG +AT QIR
Sbjct: 1556 RMLEKMGYRADLVGNGLEAIEALQ-RQTYDLVLMDVQMPEMDGMEATRQIRD-------- 1606
Query: 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ A+ H I+AMTA+ +Q E C+ GM+DYVSKP ++L A+ R
Sbjct: 1607 ----RTKADT-------HPWIVAMTANAMQGDRENCLAAGMNDYVSKPVSVDELVAAIER 1655
Query: 1219 F 1219
+
Sbjct: 1656 Y 1656
>gi|254442552|ref|ZP_05056028.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198256860|gb|EDY81168.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 931
Score = 286 bits (732), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 213/619 (34%), Positives = 303/619 (48%), Gaps = 99/619 (15%)
Query: 595 INRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA 654
+N+ + E D E RA+ A+ AKS FLA +SHEIRTPMNG++GM +L +T L+
Sbjct: 250 VNKALEAEIDRAEA--FARRAKEAEEAKSNFLANMSHEIRTPMNGIVGMNTVLRETPLND 307
Query: 655 AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQ 714
Q Y +T N + L+ LIND+LD +KIE+G+LE E F L +VL+ V SLF A+Q
Sbjct: 308 MQRRYLETMANCSESLMVLINDILDFSKIEAGKLEVENSAFDLIEVLEEVSSLFGMTASQ 367
Query: 715 KGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVD 774
KGI+L R+ E V GDP R +Q+++NLV N+IKFT++ G I + + ++D
Sbjct: 368 KGIDLICLQDGRMSEPVFGDPHRLKQVLSNLVNNAIKFTEE-GEIEIGL--------RID 418
Query: 775 VKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
G P+ W +
Sbjct: 419 ------------------------EGGPLDSVANIW-----------------------I 431
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+DTG+GIP Q R+F F QAD STSR +GGTG+GL IS+ LVELMGG IG SE G G
Sbjct: 432 QDTGIGIPESVQKRLFKAFSQADESTSRKFGGTGLGLVISQRLVELMGGTIGIESESGVG 491
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
S F + + E P++Q D+ R R L + +SI A+ R L L
Sbjct: 492 SKFWIQIPLSRAE----GPRFQIEDSDLERLRKRRVLFLMTRSILADSLREGLADLLSGS 547
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
VA +A + + S P L V+++ +GL L + R+ G ++SR
Sbjct: 548 EVACDFDVARELMEEADFDS-RPFTDL------VFEEALGLEGTEQLVEARK--GFKLSR 598
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC-FQEDPESSKKLQQKRKKP 1073
+ +LA + S EL G LL P+ L+ C ED + K Q+ P
Sbjct: 599 ----VVMLADAASRKTSLELGLSG-ARLLQAPVTARRLVHCLLSEDASAGVKKLQQEMVP 653
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
+IL+VDDN NR VAE K++G V+ GR A+ T +D FMD
Sbjct: 654 QFPE----AKILLVDDNDANRLVAEELFKRYGICPDIVESGREAI-AATAETCYDIIFMD 708
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
MP++DG+ AT IR SGES + +V I+A+TA+ + E+
Sbjct: 709 CMMPDLDGYDATRLIR-----------SGES------DTLCKNVTIVALTANAMTGDREK 751
Query: 1194 CMKCGMDDYVSKPFEDEQL 1212
C++ GMD+Y+ KP + L
Sbjct: 752 CIEAGMDEYLPKPIRPKAL 770
>gi|350554177|ref|ZP_08923307.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349788353|gb|EGZ42356.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1595
Score = 286 bits (731), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 210/626 (33%), Positives = 304/626 (48%), Gaps = 112/626 (17%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
+L +AE A+ AKS+FLA +SHEIRTPMNGV+GM +L+D+EL+A Q A+T NS +
Sbjct: 915 QLAVQAERANAAKSEFLANMSHEIRTPMNGVIGMTGLLLDSELNAEQRRQAETILNSAES 974
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+SLIND+LD +KIE+G+L+ E + F+L +L++ + + +A +KG+EL ++ P
Sbjct: 975 LLSLINDILDFSKIEAGKLDLEALDFNLQYLLEDFAAALAGRAYEKGLELFCVLAPDTPL 1034
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
+ GDPGR RQI+ NLVGN+IKFT +G + + V L V+H
Sbjct: 1035 YLRGDPGRVRQILNNLVGNAIKFTH-QGEVGIHVSL---------------------VEH 1072
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
+ D V L V DTG+GIP + +
Sbjct: 1073 REDAVL----------------------------------LRFAVTDTGIGIPPDKVSLL 1098
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG-ER 908
F F Q D S +RTYGGTG+GL+IS+ L E+M G+IG S+ G GSTF FT++ G E
Sbjct: 1099 FQKFSQVDGSITRTYGGTGLGLAISKQLAEMMQGDIGVESQEGVGSTFWFTLSLGVGQEP 1158
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
W + +P V RALV+DD I+ E+ L+R + V A + A +
Sbjct: 1159 TDARHAWGEPLPAV------RALVVDDHPIQCELLCAILERRGVPVSSAGNSADALREIY 1212
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
+ QL L + D E L L+ R +L ++ L ++ S
Sbjct: 1213 AALAEHKPYQLLLTDQQMPIMDGE---TLGQTLQADPRLA------DLYRVILPSSMSSA 1263
Query: 1029 TDRDELKSDGIVTLLTKPLRLSVLIGCFQE---------------DPESSKKLQQKRKKP 1073
D + + G L KP+R L Q P + + P
Sbjct: 1264 EDIERYHAAGFHAYLPKPIRQQELFAVLQALLALPPDRLTHTPIISPRGPRAAIHAQVIP 1323
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK-LTPPHNFDACFM 1132
+ ++ IL+V+DN N++VA G L+K G V G+ AV+ + P +D M
Sbjct: 1324 FAPNKVR---ILLVEDNSTNQQVALGILRKLGLKADAVGNGQEAVETVINIP--YDLILM 1378
Query: 1133 DLQMPEMDGFQATWQIRHLEN-EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
D+QMP MDG QAT IR L+ IN I PI+AMTA +Q
Sbjct: 1379 DVQMPVMDGLQATRAIRALDKAAINTDI------------------PIVAMTAHAMQGDK 1420
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVA 1217
E+C+ GM+DY+SKP Q+ +A
Sbjct: 1421 ERCLAAGMNDYLSKPLVPHQVAETLA 1446
>gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding region,ATPase-like:Histidine
kinase A, N-terminal:Hpt [Blastopirellula marina DSM
3645]
gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding region,ATPase-like:Histidine
kinase A, N-terminal:Hpt [Blastopirellula marina DSM
3645]
Length = 837
Score = 285 bits (729), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 204/615 (33%), Positives = 303/615 (49%), Gaps = 97/615 (15%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K A+AA+ AK QFLA +SHEIRTPMNG++GM ++L++TEL Q +Y Q S L+
Sbjct: 164 KESADAANRAKGQFLANMSHEIRTPMNGIIGMTELLLETELAPQQHEYLQMIKTSADCLV 223
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+IND+LD +KIE+G+LE E +PF L + L +++ + +A+ KG+EL +V VP +
Sbjct: 224 SVINDILDFSKIEAGKLEIESIPFQLRENLGDLMKTLAFRAHGKGLELVAHVRPDVPWRM 283
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GDPGR RQI+ NLVGN+IKFT+ G I V +VD+ +
Sbjct: 284 TGDPGRLRQILVNLVGNAIKFTE-HGEIVV----------RVDIDE-------------- 318
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+ T+ + L TV DTG+GIP A +IF
Sbjct: 319 ------------------------ISETDAL-------LHFTVCDTGIGIPEAALQKIFA 347
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD +T+R +GGTG+GLSI LVELM G+I S+ GS F FT + NS
Sbjct: 348 AFEQADGTTTRKFGGTGLGLSICSRLVELMHGKIWVESQVHVGSQFHFTAQLGI-DANSY 406
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
D ++++P + R L L++DD E+ L M V A S ++
Sbjct: 407 D---ERHIPP-DDCRQLNVLIVDDNDTCGEIIAEMLANWGMQPTVIGGAVEAISLYAEEV 462
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
++ P+ L++ID+ + E +L + K R K LL T + +
Sbjct: 463 TS---PKFQLLIIDQQMPVLEGTELLERIQKSPRGAAA--------KSILLTTGTFDKEP 511
Query: 1032 DELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
+ +L+KP++ S L+ Q +P LG G++IL+
Sbjct: 512 TNPLQARVDAILSKPIKQSDLFDTLMNVMGHGVAGDLATQNAGAEPKLGSW--GRRILLA 569
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN+VN+++A L+K G +VT G+ AV+ FD MD+QMP +DG AT +
Sbjct: 570 EDNLVNQKLAVLLLEKRGHLVTVASDGKQAVEAWK-EGGFDLVLMDVQMPILDGMAATTE 628
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR E +I PI+AMTA ++ E+C++ GMD YV+KP
Sbjct: 629 IRRHETRTALRI------------------PIIAMTAHAMKGDRERCLEAGMDGYVTKPI 670
Query: 1208 EDEQLYTAVARFFMS 1222
+ LY A+ +S
Sbjct: 671 NAQALYDAIDEALLS 685
>gi|117618531|ref|YP_854948.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117559938|gb|ABK36886.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 888
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 213/620 (34%), Positives = 299/620 (48%), Gaps = 116/620 (18%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A AKS FLA +SHEIRTPMN +LGM + + T LD Q DY S + L+ +I
Sbjct: 151 AEGATRAKSDFLANMSHEIRTPMNAILGMSHLALQTRLDPQQFDYVSKIQRSAQHLLGII 210
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+G+L+ E + F L VL+N+ +L KA KGIEL V ++ ++ GD
Sbjct: 211 NDILDFSKIEAGKLDLERIEFDLDHVLENLATLVGEKAEAKGIELLFEVDHQLDTLLYGD 270
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P R QI+ N N++KFT ++G I V K LEK
Sbjct: 271 PLRLGQILINYANNAVKFT-EQGEILV--------------KVSCLEK------------ 303
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
Q + L +V+DTG+G+ E Q R+F F
Sbjct: 304 -----------------------------QPQEVLLHCSVQDTGIGMSQEQQQRLFQSFQ 334
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSST+R YGGTG+GL+ISR L ELMGGE+G SEPG GSTF FT G R S
Sbjct: 335 QADSSTTRKYGGTGLGLAISRKLAELMGGEVGVQSEPGRGSTFWFTARLGRGRRRS---- 390
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
+Y+P + + RG R LV DD + + L+ + V A S Q A ++
Sbjct: 391 --RYLPSL-DLRGRRMLVADDSASARTIMAALLRSMSFVVDTAESGQQALQMIAGAEQEG 447
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL--------PKIFLLATSI 1026
+VL+D W GL G+E R L P ++
Sbjct: 448 --QPYEVVLLD---WHMP-GL------------DGIETGRRLIARGMGQRPYRVMVTGYG 489
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPSLGHLLKGK 1082
E + + G +L KP+ SVL IG F + + L K + + + G
Sbjct: 490 REEVFRQADTAGFDRVLVKPVCASVLFDTVIGLFGQ---QASPLTFKPPQATHHYRFDGL 546
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+IL+ +DN +N++VA L+ GA V+ G A++ + H +D MD+QMP MDG
Sbjct: 547 RILLAEDNELNQQVALELLRAVGADVSIAGNGAIALEMVAQTH-YDLILMDMQMPVMDGL 605
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
AT +R E+ VG H PILAMTA+V+ E+C+ GMDD+
Sbjct: 606 AATRLLRERED------------------VG-QHTPILAMTANVMAGDRERCLAAGMDDH 646
Query: 1203 VSKPFEDEQLYTAVARFFMS 1222
++KP + ++LY A+ R+ S
Sbjct: 647 IAKPIDPDRLYAALQRWATS 666
>gi|451949034|ref|YP_007469629.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451908382|gb|AGF79976.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 1041
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 204/612 (33%), Positives = 303/612 (49%), Gaps = 101/612 (16%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A+ A+ AKS FLA +SHEIRTPMN ++GM+ + ++ +L +Y T +S + L+++I
Sbjct: 278 AQTANEAKSSFLANMSHEIRTPMNAIIGMVGLSLNKKLSPKLREYLLTVRSSAESLLAII 337
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+G++ E + F LH + D + LFS +A + IEL I V VP + GD
Sbjct: 338 NDILDFSKIEAGKITLERIDFQLHQLFDKLADLFSDQAAARNIELVIGVEAGVPVALRGD 397
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P R Q+ NL+GN+IKFT+ KG +F V + VD
Sbjct: 398 PLRMEQVFINLLGNAIKFTE-KGVVF--------VHATVD-------------------- 428
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
T+ M +K+L +V DTG+GI E +F PF
Sbjct: 429 ----------------------SETDNM-----VKILFSVSDTGMGISEEQYESLFEPFT 461
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD S +R YGGTG+GLSI R LV L GG+I S+ G G+T FT FT R ++ +
Sbjct: 462 QADGSMTREYGGTGLGLSICRRLVGLHGGDIWVKSKAGEGTTVFFTAEFT---RQPVERE 518
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
Q VP + RGLR L+++D I + +T L+ V V +S +A + +
Sbjct: 519 IQYVVP--ATIRGLRVLIVEDNEIASCITSNILESFHFDVDVVSSCAVAQTRIGGK---- 572
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
+ + L+L+D W + + K + +GG ++P I + A E +
Sbjct: 573 -IEKYNLILMD---WRMPEVDGVECVKKIRAMEGG----DSVPIIMMTAFG-GEREVMLA 623
Query: 1035 KSDGIVTLLTKPLRLSVLIGC------FQEDPESSKKLQQKRKKPSLGHLLKGKQILVVD 1088
+ G LTKP++ S+L + E SS ++ R+ L G +IL+ +
Sbjct: 624 REAGANYFLTKPVKQSLLFDTIMDIFDYPEAMHSSLDDRETRQGVVSSEHLVGVRILLAE 683
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN-FDACFMDLQMPEMDGFQATWQ 1147
DN +N+ VA L+ G IV G+ AV L + FDA MD+QMP MDGFQAT
Sbjct: 684 DNRINQNVARELLESVGVIVEIATNGQEAVHILQDRGDEFDAVLMDVQMPVMDGFQATEA 743
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR N L +P++A+TA +Q E+CM GM+DYV+KP
Sbjct: 744 IRE--------------------NPALTEIPVIAVTAHAMQGDREKCMAIGMNDYVAKPI 783
Query: 1208 EDEQLYTAVARF 1219
E L++ + R+
Sbjct: 784 TPELLFSVLTRW 795
>gi|224371576|ref|YP_002605740.1| BarA [Desulfobacterium autotrophicum HRM2]
gi|223694293|gb|ACN17576.1| BarA [Desulfobacterium autotrophicum HRM2]
Length = 941
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 199/641 (31%), Positives = 316/641 (49%), Gaps = 119/641 (18%)
Query: 589 HIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM 648
H+ NR A+++ + + L A+AA AKSQFLA +SHEIRTPMNGVLGM +M +
Sbjct: 241 HLEEQVRNRTAELQLTMDKAIVLADEAQAASKAKSQFLANMSHEIRTPMNGVLGMAEMAL 300
Query: 649 DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLF 708
D L Q + +T +SG+ L+++IND+LD +KIE+G+LE E + F+L +++ + +
Sbjct: 301 DMNLTLEQQNAIETIKSSGESLLTIINDILDFSKIEAGKLEIETINFNLPALIEEIAQIL 360
Query: 709 SSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD 768
+ +A+ KG+EL + +++ + + DP R RQ++TNL+ N+IKFT+ +G +++
Sbjct: 361 AHRAHAKGLELIVDIAETLHPDMSSDPSRIRQVLTNLLSNAIKFTE-QGEVYLK------ 413
Query: 769 VRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRI 828
V S D+ D E + L
Sbjct: 414 VESLKDMGDS--------------------------------EQVRFL------------ 429
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
V DTG+G+ E + ++F PF QAD ST+R YGGTG+GL+ISR LVELM G+I
Sbjct: 430 -----VRDTGIGMTAEERKKLFQPFSQADESTTRKYGGTGLGLAISRQLVELMDGQINCT 484
Query: 889 SEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQ 948
PG G+ F F +T + + + P E +GL ALV+DD
Sbjct: 485 GNPGEGAEFWFDLTL----KKTAGTRILAQTP-TQELKGLSALVVDDNQTNR-------- 531
Query: 949 RLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRK 1007
E+ H NS + D L ++ + V +K +VL M
Sbjct: 532 --ELLTHQMNSWGIKQEGAEDGLK-------GLTILHRAVEEKRPFDMVLLDM--HMPHM 580
Query: 1008 GGLEISRNL--------PKIFLLATSISETDRDELKSDGIVTLLTKPLR--------LSV 1051
GL+++R + KI +L + D + GI LTKP+R + +
Sbjct: 581 DGLDVARLIRKDPTLERTKIIILTSVGIRGDAQLAREAGINIYLTKPVRQVDLYNSLVEL 640
Query: 1052 LIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCV 1111
+ G + E + + K++ + ++L+ +DN++N++VA+G L K G V
Sbjct: 641 MNGNYLEKKDLITQYHLKKELTTF-----NARVLLAEDNIINQQVAKGVLCKLGCRVELA 695
Query: 1112 DCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGN 1171
G AV ++D FMD QMP MDG++AT +IR +E+ + SG+
Sbjct: 696 TNGLEAVSA-AQKESYDIVFMDCQMPRMDGYEATGKIRWMED-----LKSGQK------- 742
Query: 1172 VGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
+PI+A+TA+ + E+C+ GMDDY+SKPF E++
Sbjct: 743 ----RLPIIALTANALSGDREKCLAAGMDDYISKPFGKEKI 779
Score = 44.3 bits (103), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 31/152 (20%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCG-------RAAVDKLTPPHNFDACF 1131
LKG LVVDDN NR + + G + G AV++ P FD
Sbjct: 516 LKGLSALVVDDNQTNRELLTHQMNSWGIKQEGAEDGLKGLTILHRAVEEKRP---FDMVL 572
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
+D+ MP MDG IR + L I+ +T+ I+
Sbjct: 573 LDMHMPHMDGLDVARLIRK--------------------DPTLERTKIIILTSVGIRGDA 612
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
+ + G++ Y++KP LY ++ M+G
Sbjct: 613 QLAREAGINIYLTKPVRQVDLYNSLVE-LMNG 643
>gi|431929976|ref|YP_007243022.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
gi|431828279|gb|AGA89392.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
Length = 750
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 203/605 (33%), Positives = 305/605 (50%), Gaps = 103/605 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K +AEAA AKS+F+A +SHEIRTPMNG+LGML+ML T L+ Q Q S + L+
Sbjct: 218 KEQAEAASQAKSRFVANMSHEIRTPMNGMLGMLEMLSQTRLNREQTAALQVVRRSAEGLL 277
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++I+D+LD +KIESG+LE E +PF + + + V +LFS+ A KG+ELA + + P V
Sbjct: 278 TVIDDILDVSKIESGKLELEEIPFDVRGLTEEVATLFSASARSKGLELACFFAPSAPAHV 337
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GDP R RQI+ NL+GN+IKFT + G + + V A+ S
Sbjct: 338 CGDPTRLRQILNNLLGNAIKFTHE-GEVALRVEEAE----------------------AS 374
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
NT ++L V DTG+G+ E +FT
Sbjct: 375 SPEANT------------------------------VRLRFEVIDTGIGMSAEHMAHLFT 404
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT-EGERNS 910
PF QAD+ST+R +GGTG+GL+IS+ L LMGG+I S G GS F+ V FT +GE
Sbjct: 405 PFHQADASTTRRFGGTGLGLAISKNLARLMGGDIEVASGLGRGSRFALVVPFTRQGE--- 461
Query: 911 LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDT 970
++ V++ G RALV+DD V Y+L+ + A + L
Sbjct: 462 -----VEHPVRVADLTGRRALVVDDNETNRRVVGYYLRNWGVVTQCAATAAEGLRQLRAA 516
Query: 971 CSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
+ ++D ++ D E G L +++ R L +R I LL +
Sbjct: 517 VDEG--QPFDVAILDLEMPDAE-GFDL---VRRIRTDSALAATR----IMLLNSGGKTGL 566
Query: 1031 RDELKSDGIVTLLTKPLRLSVLIGCFQED------PESSKKLQQKRKKPSLGH---LLKG 1081
+D+L G +L KP+R +L + S+ Q+ PS GH LL+G
Sbjct: 567 QDDL---GGALVLAKPIRQQLLRDALLQALSGVAHGSSTGAPAQRPGAPSAGHGAPLLRG 623
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ +L+V+DN +N++VA G L++ G + G + + T ++DA MD+QMP+MDG
Sbjct: 624 R-VLLVEDNPINQQVALGLLRRLGLTPDVAETGAQGIAQATSA-DYDAILMDIQMPDMDG 681
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
++ T IR E + + VPI+AMTA+ ++ E+C++ GMDD
Sbjct: 682 YETTRAIRAWEAVHHRR-----------------SVPIIAMTANTLEGDRERCLEAGMDD 724
Query: 1202 YVSKP 1206
Y++KP
Sbjct: 725 YLAKP 729
>gi|344941765|ref|ZP_08781053.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344262957|gb|EGW23228.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 1247
Score = 283 bits (724), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 213/639 (33%), Positives = 325/639 (50%), Gaps = 98/639 (15%)
Query: 598 IAQVENDYHEMMELKARAEAADVA--KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAA 655
+A ++N + +E AR A VA K++FLA +SHEIRTPMNGVLGML +L DT+L
Sbjct: 508 LALLQNQANASLE-AARDAALQVAHTKTEFLANMSHEIRTPMNGVLGMLDLLQDTQLSRE 566
Query: 656 QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQK 715
Q D A NS + L+++IND+LD +K+E+G++E E + F+L D+++ V +L SS+A+ K
Sbjct: 567 QWDLIDIAANSAESLLTIINDILDFSKLEAGKIELEQIEFNLPDLVEEVCTLLSSRAHSK 626
Query: 716 GIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775
G+EL ++ +P GDP R RQ++TNL+GN++KFT+ +G + V+V + SK D
Sbjct: 627 GLELNCFLPTDLPLRWQGDPTRIRQVLTNLIGNAVKFTE-QGEVSVTVRV-----SKKDD 680
Query: 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVE 835
D + +D T+ F VVD
Sbjct: 681 TDAASAPG----RFAADTPSLTILRFEVVD------------------------------ 706
Query: 836 DTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGS 895
TG+GI EAQ R+F F QADSSTSR YGGTG+GLSIS+ LV LM G IG S G G+
Sbjct: 707 -TGIGITAEAQARLFQAFSQADSSTSRRYGGTGLGLSISKDLVMLMNGNIGVESALGQGA 765
Query: 896 TFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH 955
F FT+ + + P+ + F R L++DD + + ++L +
Sbjct: 766 NFWFTLPLAAVDNEAPAPQ--------ANFCDKRVLIVDDNATNRMILTHYLSNWGFTLS 817
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
A++ + L +L ++ + +D L+L M Q G ++R
Sbjct: 818 EADN------------GPAALDELEAAVLRNEPYD----LLLSDM--QMPGMDGFALARA 859
Query: 1016 L---------PKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPE 1061
+ P+I L + SI S+ +R + G L KP+R S L I Q +
Sbjct: 860 IIENPAIADTPRILLSSGSIGSQVER---LASGFTQSLLKPVRQSQLFDAVIDALQLPGQ 916
Query: 1062 SSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL 1121
+ +++++K+ L + K++LVV+DN VN++V L K + G+ A+D+L
Sbjct: 917 KNAPVEKEKKEVLLDY--SSKRVLVVEDNKVNQKVILSQLAKFQLKPDLANNGQVALDQL 974
Query: 1122 TPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILA 1181
+D FMD QMP MDG++AT +R E EI +G G+ G ++A
Sbjct: 975 E-RQAYDLVFMDCQMPIMDGYEATRILR--EREI-----AGACPEHGRGS-GKLRTSVIA 1025
Query: 1182 MTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+TA E+C+ GMDDY+SKP L +AR+
Sbjct: 1026 LTAHASAGEREKCLSAGMDDYLSKPASRSDLAVVLARWL 1064
>gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
Length = 1782
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 193/615 (31%), Positives = 311/615 (50%), Gaps = 101/615 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K +A+AA AK FLA +SHEIRTPMN ++GM Q+ + TELD Q +Y + + + L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+IND+LD +KIE+G+L+ + +PF L +L+++ +FS KA K IEL V+ VP +
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSIPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GD R Q++ NL+ N+IKFT+ +G + +S+ L V+ +
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTE-RGEVLLSLSL---------------------VEQQD 1190
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
D V L +V D+G+G+ + Q ++F
Sbjct: 1191 DDVV----------------------------------LRFSVRDSGIGLTEQQQAKLFK 1216
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--TEGERN 909
F QAD+ST+R YGGTG+GL+I + LVELMGG+IG S+ G GSTF FTV ++G++
Sbjct: 1217 SFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKLHISDGQKL 1276
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
L+ E G+ LV+DD + ++ R L+ + V S + A S
Sbjct: 1277 VLE----------QELEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAIS---- 1322
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
C +L + LID + + + GL ++ Q + ++ PKI +++
Sbjct: 1323 RC---LLQAYEVALIDWKMPNMD-GLETARQIQLQAQSQSQSQPQSQPKILMVSAHADRE 1378
Query: 1030 DRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS----LGHLLKGKQIL 1085
+++ + ++KP+ S L+ L +R+ L L+GK+IL
Sbjct: 1379 FLTQIEQLALAGYISKPISASRLLDGIMNAIGREGILPVRRRTEELAPQLLLPLQGKRIL 1438
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
+V+DN +N VA L++ G I++ G+ A+DKL+ H FD MD QMP MDG+QAT
Sbjct: 1439 LVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQAT 1497
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
IR L ++P++AMTA+ + + C++ GM+D+++K
Sbjct: 1498 QAIRKRPE--------------------LANLPVVAMTANAMAGDRDMCIRAGMNDHIAK 1537
Query: 1206 PFEDEQLYTAVARFF 1220
P E LY + ++
Sbjct: 1538 PIEVNVLYQTLLKYL 1552
>gi|358638308|dbj|BAL25605.1| putative two-component system sensor protein [Azoarcus sp. KH32C]
Length = 1141
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 202/629 (32%), Positives = 300/629 (47%), Gaps = 96/629 (15%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
R AQ+E ++ AEAA+ AK+ F+A +SHEIRTPMN +L + +L EL
Sbjct: 398 RTAQLEIANRALVSRTEEAEAANRAKADFVANMSHEIRTPMNAILSLAYLLEKHELTPVA 457
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
Q H +G+ L+ +IND+LD +KI++ RLE E +PF L DVLDN+ S+ SS +K
Sbjct: 458 RGMVQKIHIAGRSLLGIINDILDFSKIDAQRLEIEHIPFRLADVLDNIASIMSSAVGEKP 517
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
+E+ + + + GD R Q++ NL GN+IKFT ++G + VSV + RS
Sbjct: 518 VEVVVGPAPEGANFLKGDALRLGQVLINLAGNAIKFT-NEGEVVVSVAQVAEDRST---- 572
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
G ++L V D
Sbjct: 573 -------------------------------------------------GMVRLRFAVRD 583
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+GI + Q IF F Q DSSTSR++GGTG+GL+ISR LVELMGGE+ SEPG GS
Sbjct: 584 TGIGIAKDKQQAIFNAFTQGDSSTSRSFGGTGLGLAISRRLVELMGGELSVASEPGKGSE 643
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
F+F + L P + F+ R LV DD + V L +V
Sbjct: 644 FAFEIAL------ELSDPVGNATPAMM-FQ--RVLVADDNATARVVLSATAASLGWSVEA 694
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRN 1015
+S + A + +++ P L+L D E+ GL +++ R+ G +
Sbjct: 695 VDSGKKAIAAVANAGRN---PYDVLLL---DWRMPEVDGLAAATAIRRNIREDG-----S 743
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSL 1075
P I ++ E R++ S+ + +LTKP+ S L + +L + +
Sbjct: 744 APIIIMVTAMDREQLREQPGSEQVDAVLTKPVTCSGLYNALLDAKSRRGELPIQEVPRTG 803
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL-TPPHNFDACFMDL 1134
G L G++ILVVDDN +NR VA+ L GA V G A+ L + P FD MD+
Sbjct: 804 GQALAGRRILVVDDNEMNRDVAQQILVGEGAEVELAPEGSTALTMLQSHPEGFDLVLMDV 863
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP MDG++ T QIR + L H+P++A+TA +
Sbjct: 864 QMPVMDGYETTRQIRATPS--------------------LAHLPVIALTAGAFKKQQLAA 903
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
++ GM+D+V+KPF+ ++L V R+ G
Sbjct: 904 IESGMNDFVAKPFDVDELIATVQRYTGGG 932
>gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
Length = 1259
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 203/600 (33%), Positives = 302/600 (50%), Gaps = 95/600 (15%)
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S FLA++SHEIRTP+NGV+G L +L T+LD Q + + A +S L+ LIND+LD +K
Sbjct: 595 STFLASMSHEIRTPLNGVIGFLDLLHTTKLDDQQGRFVELAKSSASSLLHLINDILDLSK 654
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
IE+G +E E F L D++++V +F+ + G+EL V+ VP+ IGD R RQ++
Sbjct: 655 IEAGGIELEQTEFVLTDLIESVPEMFAPQCRMTGLELNSSVATDVPQAAIGDCERIRQVL 714
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
NL N++KFT+ G +++ V V S D
Sbjct: 715 VNLFANAVKFTE-TGGVYLRVERERSVASSHDA--------------------------- 746
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
+ RI+ +VEDTG+G+P R+F F Q D+ST+R
Sbjct: 747 ----------------------IARIRF--SVEDTGIGVPRSKMQRLFKAFSQVDASTTR 782
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922
+YGGTG+GL+I + LVELMGGEIG SE G GSTF FT+ ER++ + +P++
Sbjct: 783 SYGGTGLGLAICKQLVELMGGEIGVESEVGKGSTFWFTLPLQAIERSTCN-----LIPNI 837
Query: 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALV 982
+GLR L +DD + +V + LQ + V A + + A + L D +V QLA++
Sbjct: 838 ---QGLRVLAVDDNHMNLQVIKEQLQSWGVEVSTAGNGRRALALLEDAAKRNVPYQLAIL 894
Query: 983 LIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET-DRDELKSDGIV 1040
D E+ GL L +++ + L +R L+ TS T ELK +V
Sbjct: 895 ----DHLMPELDGLRLAHLINDHQM---LHETR-----LLMLTSYEHTIPHAELKKLEMV 942
Query: 1041 TLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRV 1096
L KP+R L L+ E K + + ++P ILVVDDN +NR V
Sbjct: 943 C-LPKPVRQTRLLDALVALTGERSPKQKVEKVENQQPVRERAPLEGAILVVDDNEINRIV 1001
Query: 1097 AEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEIN 1156
A+ L+ G V+ + GR AV+K+ FD MD +MPEMDGF AT IR+L +
Sbjct: 1002 AKEILQSEGFQVSLAENGRQAVEKIQSGQ-FDLVLMDCEMPEMDGFAATRMIRNLAENGH 1060
Query: 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
++A ++PI+A+TA + E+C+ GM+ YV KP +L +
Sbjct: 1061 PELA---------------NLPIVALTAQAVLGDKERCLAAGMNGYVMKPVNRSELIDTI 1105
>gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
gi|386342450|ref|YP_006038816.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
gi|334864851|gb|AEH15322.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
Length = 1784
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 197/632 (31%), Positives = 308/632 (48%), Gaps = 133/632 (21%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K +A+AA AK FLA +SHEIRTPMN ++GM Q+ + TELD Q +Y + + + L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+IND+LD +KIE+G+L+ + VPF L +L+++ +FS KA K IEL V+ VP +
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GD R Q++ NL+ N+IKFT+ +G + +S+ L V+ +
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTE-RGEVLLSLSL---------------------VEQQD 1190
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
D V L +V D+G+G+ + Q ++F
Sbjct: 1191 DDVV----------------------------------LRFSVRDSGIGLTEQQQAKLFK 1216
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--TEGERN 909
F QAD+ST+R YGGTG+GL+I + LVELMGG+IG S+ G GSTF FTV ++G++
Sbjct: 1217 SFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKLHISDGQKL 1276
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
L+ E G+ LV+DD + ++ R L+ + V S + A S
Sbjct: 1277 VLE----------QELEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAIS---- 1322
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR--------------- 1014
C +L + LID W + GLE +R
Sbjct: 1323 RC---LLQAYEVALID---W-------------KMPNMDGLETARQIQLQAQSQSQSQPQ 1363
Query: 1015 --NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK- 1071
PKI +++ +++ + ++KP+ S L+ L +R+
Sbjct: 1364 SHPQPKILMVSAHADHEFLTQIEQLALAGYISKPISASRLLDGIMNAIGREGILPVRRRT 1423
Query: 1072 ---KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
P L L+GK+IL+V+DN +N VA L++ G I++ G+ A+DKL+ H FD
Sbjct: 1424 EELAPQLLVPLQGKRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQH-FD 1482
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD QMP MDG+QAT IR L ++P++AMTA+ +
Sbjct: 1483 LVLMDCQMPVMDGYQATQAIRKRPE--------------------LANLPVVAMTANAMA 1522
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ C++ GM+D+++KP E LY + ++
Sbjct: 1523 GDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYL 1554
>gi|350551958|ref|ZP_08921167.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349795601|gb|EGZ49397.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1343
Score = 283 bits (723), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 206/629 (32%), Positives = 302/629 (48%), Gaps = 96/629 (15%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
Q+E EL ++AE A++AKS FLA +SHEIRTPMNGV+GM +L+DTEL+ Q Y
Sbjct: 638 QLETAIARANELASKAEQANIAKSHFLANMSHEIRTPMNGVIGMTGLLLDTELNTEQRRY 697
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
A+ H S L++LIND+LD +KIE+ RL+ E + F+L ++L++ + + +A++KG+EL
Sbjct: 698 AEIVHTSADALLTLINDILDFSKIEAHRLDLEMLDFNLLELLEDFAATLAVRAHEKGLEL 757
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+ VP V GDPGR RQI+TNLV N+IKFTQ +G + V V L + + V
Sbjct: 758 LCFADPNVPTQVRGDPGRLRQILTNLVSNAIKFTQ-QGEVVVRVFLMAQTAQECTLHFSV 816
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
+ + + K D ++ E F +D
Sbjct: 817 RDTGIGIPEEKQDILF---------------EKFTQVD---------------------- 839
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
+ST+R YGGTG+GL+IS+ L ELMGGEIG S+ GSTF F
Sbjct: 840 ------------------ASTTRRYGGTGLGLAISKQLAELMGGEIGLHSQEENGSTFWF 881
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
TV + E+ + + Q PD+ G+R LV+DD + E+ L M V
Sbjct: 882 TVCLGKQEQGQAEIQAQGN-PDL---HGVRILVVDDNATNREILITRLNLWGMRVSDYAD 937
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
A L S P L +ID + + + G L ++K + S K
Sbjct: 938 ALSALEALKQAVSVHKDP-FKLAIIDMQMPEMD-GETLGTLIKS-------DASLQSLKT 988
Query: 1020 FLLATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPS- 1074
+L + D + G +TKPLR +VL E P++ + R++P+
Sbjct: 989 IMLTSLGMRGDAKRFEQAGFSAYITKPLRHLELFNVLSDLMAEGPQTQSRRILTRERPAQ 1048
Query: 1075 --LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIV-TCVDCGRAAVDKLTPPHNFDACF 1131
H +IL+ +DN+ N++VA LK+ G T D V T P +D
Sbjct: 1049 MPQHHFNVQARILLAEDNITNQKVALSILKRLGLKADTVADGAEVLVALKTIP--YDLVL 1106
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP MDG AT IR + +F + +PI+AMTA +Q
Sbjct: 1107 MDVQMPVMDGLAATRAIR-------------DPQTPVFNHA----IPIIAMTAHAMQGDR 1149
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E+C++ GM+DYV KP L A+ R+
Sbjct: 1150 ERCLQAGMNDYVPKPVSATILAEALKRWL 1178
>gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
DSM 45221]
gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
DSM 45221]
Length = 885
Score = 283 bits (723), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 213/635 (33%), Positives = 314/635 (49%), Gaps = 104/635 (16%)
Query: 585 LLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGML 644
L+VG + + I+ ++ E+M A+AA+ AK +FLA +SHEIRTP+NGV+G
Sbjct: 204 LVVGSV--SVARDISDLKRTESELMTAMKEAQAANRAKGEFLAAMSHEIRTPINGVIGAS 261
Query: 645 QMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNV 704
++ +TELDA Q Y T G L+SL+NDVLD +KIE+G+L E + F+ VL+ V
Sbjct: 262 ELCQETELDAEQRAYLDTVIQCGNTLLSLVNDVLDFSKIEAGQLNLEQLNFNPEAVLEEV 321
Query: 705 LSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH 764
+ F+ +KGIEL + DR+P+ VIGDP R +QI NL+GN++KFT+ G I +S H
Sbjct: 322 IEEFAGTVKKKGIELILSCDDRMPKYVIGDPTRLKQIFYNLLGNAVKFTE-AGEIVLSAH 380
Query: 765 LADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQ 824
++E+S Q
Sbjct: 381 --------------IVERS---------------------------------------AQ 387
Query: 825 LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGE 884
L I+ V DTG+GI + IF+ F Q D ST+R YGGTG+GL+I + L ELM G
Sbjct: 388 LAVIRF--KVRDTGIGISETRREAIFSSFTQEDMSTTRRYGGTGLGLAICKELTELMAGS 445
Query: 885 IGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR 944
+ S G GSTF+ V F ++ VP SE LR LV+DD E+ +
Sbjct: 446 LSVDSRVGEGSTFTLEVPFELSSTPGIEA-----VPFNSELVDLRVLVVDDNPTNREIYQ 500
Query: 945 YHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004
+ A+ A L ST LV++D+ + GL L +++ +
Sbjct: 501 RMCRGWGYRCETASEGGEALRMLEHYASTD--DPFRLVILDQQMMGV-TGLDLASLIRNR 557
Query: 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSK 1064
+ R+L K+ LL++S++ ++ + S I L KP++ SVL+ E
Sbjct: 558 QEM------RDL-KMILLSSSLNRSEAERAASLKIARALAKPIKRSVLLEVILETFGIRS 610
Query: 1065 KL-------QQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
L + +K S H IL+ +DN VN+ +A+ LKK G VT G A
Sbjct: 611 PLCGDLDVSAAEAEKASTLH------ILLAEDNEVNQNIAKRRLKKLGHEVTVAVNGHEA 664
Query: 1118 VDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177
++++ H+FD MD+QMP MDG++AT +IR+LE I G S H
Sbjct: 665 LEQVA-QHDFDCILMDIQMPGMDGYEATQEIRNLE------IQDGRSR----------HF 707
Query: 1178 PILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
I+AMTA ++ E+C MD+Y+SKPF E+L
Sbjct: 708 -IVAMTAHAMEGDAERCFANDMDEYISKPFRVERL 741
>gi|398348886|ref|ZP_10533589.1| multi-sensor hybrid histidine kinase [Leptospira broomii str. 5399]
Length = 847
Score = 283 bits (723), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 197/615 (32%), Positives = 311/615 (50%), Gaps = 123/615 (20%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS+FLA +SHEIRTPMNGV+GM ++L+D++L + +YA+ SG+ L+S+IND+LD
Sbjct: 332 AKSEFLAMMSHEIRTPMNGVIGMTELLLDSDLTGEKREYAEIIQKSGESLLSIINDILDY 391
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIESG L E F + + + L LF S A +KGI+L ++ VP+++IGD R RQ
Sbjct: 392 SKIESGTLRLESKEFSILETAEETLDLFRSSAAEKGIDLICHIDPNVPDIIIGDKLRLRQ 451
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
++ NL GNS+KFT+ KG +F+S ++ K DK + T+
Sbjct: 452 VLINLFGNSLKFTE-KGEVFLSAEVS-----------------------KKDKSFCTIR- 486
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
F V D TG+GIP E Q ++F PF Q D+S+
Sbjct: 487 FSVRD-------------------------------TGIGIPKEKQKQLFNPFYQVDTSS 515
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
+R YGGTG+GLSIS L+++MGG I S+ G+TFSF + E+ + Q +P
Sbjct: 516 TRKYGGTGLGLSISYRLIKMMGGRIWLESDVNKGTTFSFEIQAESVEQKN------QVIP 569
Query: 921 DVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLP 977
+++ + GL + L+IDD + + + LQ L + ++S + A S L +LP
Sbjct: 570 NIN-YPGLENRKILIIDDNATNLRILSHQLQILGLMTFSSSSKEEALSLL----DLGILP 624
Query: 978 QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK------IFLLATSISETDR 1031
+LA +L Y L G++I++ L + + LL++SI +
Sbjct: 625 ELA---------------ILDYNLAGN---NGVQIAQELRRRNFLFPLILLSSSILDIKE 666
Query: 1032 DELKSDGIVTLLTKPLR-------LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQI 1084
E+ + L+KP++ ++ ++ E ++++ K+ L ++
Sbjct: 667 REIADQLFLRQLSKPVKKKELEQIVTEILITGTEKGKANRSSSYLEKQKDLLQSTYPFEV 726
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+ +DN +N +A+ L+K G G+ +++L FD MD+ MPEMDG QA
Sbjct: 727 LIAEDNEINLSLAKRILQKLGYSPIVATNGKQVLNRLREAK-FDVVLMDVHMPEMDGIQA 785
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVP-ILAMTADVIQASNEQCMKCGMDDYV 1203
T IR+ + NEQ P I+AMTA +Q E C++ GM+DYV
Sbjct: 786 TQVIRNTWPQ-NEQ-------------------PYIIAMTAAAMQGDREICLRAGMNDYV 825
Query: 1204 SKPFEDEQLYTAVAR 1218
SKP E+L A+ +
Sbjct: 826 SKPIVFEELIHALRK 840
>gi|218779594|ref|YP_002430912.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218760978|gb|ACL03444.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1102
Score = 283 bits (723), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 196/625 (31%), Positives = 307/625 (49%), Gaps = 101/625 (16%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
Q+EN +L AE A++AK FLA +SHEIRTPMNGV+GM ++LM+T L++ Q +Y
Sbjct: 407 QLENLVEGANQLAVEAELANMAKGVFLANMSHEIRTPMNGVIGMGELLMETRLNSEQTEY 466
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
+ ++S + L+ +IND+LD +KI++ +L+ E + F+L + ++ V + S A +KG+E
Sbjct: 467 VERINSSAQALLRVINDILDYSKIDADKLDLEVIEFNLRNTVEGVADVISVPAEEKGVEA 526
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
A + VP + GDPGR RQI+ NL GN++KFT+ KG + + R +D +D
Sbjct: 527 ACLIHHDVPLWLKGDPGRLRQILMNLSGNAVKFTE-KGEVVI--------RVSLDSED-- 575
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
E+ I+ V D+G+
Sbjct: 576 -------------------------------------------EETAVIRF--EVRDSGI 590
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GIP + Q +FTPF QADSST+R +GGTG+GL+IS+ L ELMGGEIG SE G GSTF F
Sbjct: 591 GIPPDVQKTLFTPFTQADSSTTRKHGGTGLGLAISKKLSELMGGEIGLTSEEGKGSTFWF 650
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
T + + P+ + V D+ +G R LV+DD + R L+ + A
Sbjct: 651 TAVLPKSRKA---PREELSVKDL---QGKRVLVVDDVETNRIILREMLRGWKSRPEEAPG 704
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
+ A ++L + + L ++D + D + + +L R K N+ +
Sbjct: 705 GEQALAWLDKAYAEN--DPFDLAILDMQMPDMDGAALGSRILDDPRFK-------NITLV 755
Query: 1020 FLLATSISETDRDELKSDGIVTLLTKPLR-------LSVLIG-CFQEDPESSKKLQQKRK 1071
L + + D ++ G LTKP++ LS +G C E+ ++ +
Sbjct: 756 MLTSMGM-RGDAQAMEKLGFHAYLTKPIKQAQLFDALSCTMGACSGEEAGGARSI----V 810
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
P + IL+ DDN +N++VA L K G V + G+ A+D + +D
Sbjct: 811 TPYTSEETQKIHILLADDNDINQKVASTNLIKMGHSVVVANNGKEALDAIVKGEQYDLIL 870
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD QMP MDG +AT +IR E + PI+A+TA +
Sbjct: 871 MDGQMPIMDGMEATRKIRRFEAAHK-----------------VKRTPIVALTAHAMTGDR 913
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAV 1216
E+ ++ GMDDY++KP + + L +
Sbjct: 914 EKFIEAGMDDYLTKPLQRDALTKVI 938
Score = 45.8 bits (107), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 26/144 (18%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV---DKLTPPHN-FDACFMDL 1134
L+GK++LVVDD NR + L+ + G A+ DK ++ FD +D+
Sbjct: 670 LQGKRVLVVDDVETNRIILREMLRGWKSRPEEAPGGEQALAWLDKAYAENDPFDLAILDM 729
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP+MDG A R L++ F N+ L + + M D Q
Sbjct: 730 QMPDMDG--AALGSRILDDP-------------RFKNITLVMLTSMGMRGDA------QA 768
Query: 1195 M-KCGMDDYVSKPFEDEQLYTAVA 1217
M K G Y++KP + QL+ A++
Sbjct: 769 MEKLGFHAYLTKPIKQAQLFDALS 792
>gi|333907033|ref|YP_004480619.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
IVIA-Po-181]
gi|333477039|gb|AEF53700.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
IVIA-Po-181]
Length = 1222
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 196/626 (31%), Positives = 319/626 (50%), Gaps = 91/626 (14%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
QV+ +++ + AE A+ KS FL+ +SHEIRTPMN +LGM + + EL+ Q +Y
Sbjct: 448 QVDQQTNDIEHARQEAELANKMKSDFLSNMSHEIRTPMNAILGMSHLALQGELNRKQRNY 507
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
+ H S + L+ +IND+LD +KIE+G++E E F+L DVL ++ +L S KA + +EL
Sbjct: 508 VEKVHRSAESLLGIINDILDFSKIEAGKMELEQTDFNLEDVLIHLSNLLSLKAEDQELEL 567
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+++ VP +IGDP R QI+TNL N++KFT++ +V + KV
Sbjct: 568 LFDIAEDVPLTLIGDPIRLGQILTNLGNNALKFTEE---------------GEVVIHAKV 612
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
L++ +N D K W ++L +V+DTG+
Sbjct: 613 LKR------------WND-------DEHKEW-----------------VQLQFSVQDTGI 636
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
G+ E Q R+F + QADSST+R YGGTG+GLSIS+ L ELM G+I SE G+GS F F
Sbjct: 637 GMTPEQQQRLFKTYSQADSSTTRKYGGTGLGLSISKNLTELMEGQIWVESEQGSGSCFKF 696
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
T+ N +P ++ + + S +G RALV+DD++ E+ LQR ++ A +
Sbjct: 697 TINIM---VNQEEP--EKSIENASVLQGKRALVVDDRNSAREILLSILQRFGLSTDSAKN 751
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
+ A + + + + Q +V +D W I L + R + +S I
Sbjct: 752 GKEALTKIMEADKQNAPYQ--IVFMD---WKMPIMNGLDCI----RTFQSIPLSIQPKTI 802
Query: 1020 FLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF-----QEDPESSKKLQQKRKKPS 1074
+ A E D D++K + +TKP+ S+L+ + ++++++ +
Sbjct: 803 LITAVGKDELD-DQIKDLNLHGAITKPVNASILLNLVMSAFGHQLSYKGRRVKRRDSERQ 861
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
+ L GK IL+V+DN +N+ +A L VT + G+ A+D L FD MD+
Sbjct: 862 IAQQLAGKHILLVEDNEINQELASDLLTDVKINVTVANHGQEALDLLNSSQAFDCVLMDV 921
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP MDG+ AT +IR L F N +PI+AMTA+ ++ +
Sbjct: 922 QMPIMDGYTATHEIRKLPR---------------FSN-----LPIIAMTANAMKEDLDAA 961
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ GM+ +++KP + ++Y +A +
Sbjct: 962 LDSGMNAHLTKPIQVAEMYKTLAHWM 987
>gi|452966995|gb|EME72002.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
Length = 1523
Score = 282 bits (722), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 206/634 (32%), Positives = 307/634 (48%), Gaps = 111/634 (17%)
Query: 595 INRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA 654
I R + + H+ +E +AEAA AK+ FLA +SHEIRTPMN ++GM + + TEL+
Sbjct: 853 ITRQKEADTLLHQALE---KAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTELNP 909
Query: 655 AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQ 714
Q DY + SG+ L+ +IND+LD +KIE+G+L E +L VLDNV +L + K
Sbjct: 910 RQKDYVRKIQQSGQHLLGIINDILDFSKIEAGKLAVEHTEVYLDKVLDNVANLITEKTTA 969
Query: 715 KGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVD 774
KG+EL V VP ++GDP R QI+ N N++KFT+ G I + V L D+ +V
Sbjct: 970 KGLELVFDVGSDVPNDLVGDPLRLGQILINYANNAVKFTE-AGEIAIRVRLGQDLGGEVV 1028
Query: 775 VKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
++ +V + + + EQ GR+
Sbjct: 1029 LRFEVRDTGIGLSE----------------------------------EQRGRL------ 1048
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
F F QADSST+R YGGTG+GL+IS+ L ELMGG +G SEPG G
Sbjct: 1049 ---------------FQSFQQADSSTTRKYGGTGLGLAISKKLAELMGGGVGVESEPGQG 1093
Query: 895 STFSFTVTFTEGE-RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
STF FT T +G+ R L P+ PD+ RG R LV+DD V L +
Sbjct: 1094 STFWFTATLGKGKPRRKLLPR-----PDL---RGRRMLVVDDNENARAVLVDMLAAMSFK 1145
Query: 954 VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
V S LA + T Q +V +D + + G+ Y +K GL ++
Sbjct: 1146 VDDVESGALAVEAVRRTMGGDDAYQ--IVFLDWQMPGMD-GIETAYAIK------GLGLT 1196
Query: 1014 RNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL-------IGCFQED-PESSKK 1065
R P + ++ E + GI +L KP+ S+L +G ED P+ S
Sbjct: 1197 RT-PHMIMVTAHGREEVMAGAEHAGIEEVLIKPVNPSLLFDAAMRSLGAVPEDEPDDSAG 1255
Query: 1066 LQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPH 1125
S L+G ++L+V+DN N++VA L G +V + G AV+ +
Sbjct: 1256 AAVNEADLS---GLRGLRVLLVEDNDFNQQVASELLADGGVVVELAENGAVAVE-MVGAA 1311
Query: 1126 NFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTAD 1185
+D MD+QMP MDG AT +IR L G +PI+AMTA+
Sbjct: 1312 PYDMVLMDMQMPVMDGVTATREIRRL---------------------GFGDLPIIAMTAN 1350
Query: 1186 VIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+QA E+C++ GM+D+++KP + + ++ + ++
Sbjct: 1351 AMQADKEKCLEAGMNDHLAKPIDPDAMFATLLKW 1384
>gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
BH72]
gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
BH72]
Length = 831
Score = 282 bits (722), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 218/635 (34%), Positives = 310/635 (48%), Gaps = 120/635 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+++ K AEAA AK +FLA +SHEIRTPMNG+LGM +L+D+ L Q DY QT +S
Sbjct: 157 ELLQAKEAAEAASRAKGEFLANMSHEIRTPMNGILGMTDLLLDSALAPEQRDYLQTVKSS 216
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L++L+ND+LD ++IE+GRL E + F + ++ L + +A+QKG+EL V+
Sbjct: 217 AEALLTLLNDILDFSRIEAGRLSLEEIDFSISGLVAETLRTLALRAHQKGVELFFDVAPD 276
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP V+ GDP R RQ++TNLVGN+IKFT+ +G I + V + D
Sbjct: 277 VPAVLKGDPARIRQVLTNLVGNAIKFTE-RGEIELDVTVVD------------------- 316
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+D + TL LVTV DTG+GIP E
Sbjct: 317 ----TDDRHATL--------------------------------LVTVRDTGIGIPAEKT 340
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
IF F QAD+ST+R YGGTG+GL+I + LVELMGGE+ S G GS FSF++
Sbjct: 341 EAIFGAFAQADNSTTRKYGGTGLGLAICKHLVELMGGELRVQSTLGEGSRFSFSLRLA-- 398
Query: 907 ERNSLDPKWQQYVPDVSE-FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
+ VP + E RG RALV E L R + V V +
Sbjct: 399 -------RVASPVPRLPEVLRGARALVAVTNPAFGERLAAQLVRAGL-VPVLAADGAGAL 450
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
+++ P VL+D D+ G L + E + L +I L+
Sbjct: 451 AALAAAASANAP-FDFVLMDADM-PAPGGFALAERFQ--------EAAPALDRIVLMLP- 499
Query: 1026 ISETDRDEL---KSDGIVTLLTKP---------LRLS-VLIGCFQE------DPES--SK 1064
S T R +L + G+ + L KP LR++ V G E DP+ ++
Sbjct: 500 -SHTQRADLVRCQQLGLQSRLAKPFAAEDLYEALRIARVGSGAMSEESLLAFDPQRTLTE 558
Query: 1065 KLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
+L+ +R + IL+V+DN VN+ VA L++ G VT V+ G A++
Sbjct: 559 RLRAERAPE------RRLDILLVEDNPVNQTVASRMLERVGHKVTVVNNGAEAIEAFDAG 612
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMT 1183
H FD MDLQMP M G +AT IR E + + G W VPI+AMT
Sbjct: 613 H-FDLVLMDLQMPVMGGIEATQAIRAREARRSWAVQGG------------WRAVPIVAMT 659
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
A +++ +C++ GMDDYV+KP L A+ R
Sbjct: 660 AHAMESDRARCLEAGMDDYVAKPIRAGDLLAAIRR 694
>gi|261250888|ref|ZP_05943462.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417954131|ref|ZP_12597170.1| two-component system sensor protein [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260937761|gb|EEX93749.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342815849|gb|EGU50757.1| two-component system sensor protein [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 1053
Score = 282 bits (722), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 207/622 (33%), Positives = 306/622 (49%), Gaps = 103/622 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + +++AE A KS FLA +SHEIRTPMN ++GM + + T+L Q DY HNS
Sbjct: 286 ELNKARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTPKQHDYILKIHNS 345
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIE+G+L E + FHL DVL NV + KA +KG+EL +
Sbjct: 346 ASLLLGIINDILDFSKIEAGKLSIEHIEFHLDDVLHNVSMVTGQKAFEKGLELIFQIDRN 405
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP+V+ GDP R QII NLV N++KFT D+G I V
Sbjct: 406 VPKVLFGDPLRLGQIIINLVNNAVKFT-DQGEITV------------------------- 439
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
H + K Y+ +I+L TV+DTG+G+ E
Sbjct: 440 --HVTKKPYSE----------------------------EKIELNFTVQDTGIGMSPEQS 469
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT--FT 904
++F+ F QAD ST+R YGGTG+GLSI R LVELMGG+I S G GS F F V +
Sbjct: 470 EKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELMGGDIHVESAVGKGSQFKFNVLTGYF 529
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
EG D VP S ++A+V+DD V L L + +S +LA
Sbjct: 530 EG-----DEVISHVVP--STLNDVKAMVVDDNEHALLVMEDLLDVLPNRPSLVSSGELAI 582
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
L + + LV +D W V+ + Q+ + L + PKI ++
Sbjct: 583 EALMEATKQN--QPYNLVFMD---WKMP---VMSGIEATQKIRHTLPAEQQ-PKIVIVTA 633
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKPSLGHLLKGK 1082
E +L I L+KP+ S L + P+ ++ + K+ + L+G
Sbjct: 634 YDKEDISLDLDDLDIAGFLSKPVGQSYLFDLLMDLFGPKLNENTKSHSKQRTKDSSLRGL 693
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT------PPHNFDACFMDLQM 1136
+L+V+DN +N+++A +++ G VT + G+ A+D L PH F+ FMDLQM
Sbjct: 694 NVLLVEDNEINQQIAVELMEEKGLKVTVANNGQEALDTLEQVYQPDSPH-FEIIFMDLQM 752
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P MDG++A+ +IR G+ VP++AMTA + E+C+
Sbjct: 753 PVMDGYEASKRIR--------------------GDHRFDDVPLVAMTAHAMIEERERCLS 792
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
GM+D+VSKP + E L++ + R
Sbjct: 793 IGMNDHVSKPIDPEILFSTIKR 814
>gi|373950837|ref|ZP_09610798.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
gi|386323330|ref|YP_006019447.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|333817475|gb|AEG10141.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|373887437|gb|EHQ16329.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
Length = 1784
Score = 282 bits (721), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 197/632 (31%), Positives = 308/632 (48%), Gaps = 133/632 (21%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K +A+AA AK FLA +SHEIRTPMN ++GM Q+ + TELD Q +Y + + + L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+IND+LD +KIE+G+L+ + VPF L +L+++ +FS KA K IEL V+ VP +
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GD R Q++ NL+ N+IKFT+ +G + +S+ L V+ +
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTE-RGEVLLSLSL---------------------VEQQD 1190
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
D V L +V D+G+G+ + Q ++F
Sbjct: 1191 DDVV----------------------------------LRFSVRDSGIGLTEQQQAKLFK 1216
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--TEGERN 909
F QAD+ST+R YGGTG+GL+I + LVELMGG+IG S+ G GSTF FTV ++G++
Sbjct: 1217 SFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKLHISDGQKL 1276
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
L+ E G+ LV+DD + ++ R L+ + V S + A S
Sbjct: 1277 VLE----------QELEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAIS---- 1322
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR--------------- 1014
C +L + LID W + GLE +R
Sbjct: 1323 RC---LLQAYEVALID---W-------------KMPNMDGLETARQIQLQAQSQSQSQPQ 1363
Query: 1015 --NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK- 1071
PKI +++ +++ + ++KP+ S L+ L +R+
Sbjct: 1364 SHPQPKILMVSAHADHEFLTQIEQLALAGYISKPISASRLLDGIMNAIGREGILPVRRRT 1423
Query: 1072 ---KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
P L L+GK+IL+V+DN +N VA L++ G I++ G+ A+DKL+ H FD
Sbjct: 1424 EELAPQLLVPLQGKRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQH-FD 1482
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD QMP MDG+QAT IR L ++P++AMTA+ +
Sbjct: 1483 LVLMDCQMPVMDGYQATQAIRKRPE--------------------LANLPVVAMTANAMA 1522
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ C++ GM+D+++KP E LY + ++
Sbjct: 1523 GDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYL 1554
>gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
Length = 954
Score = 282 bits (721), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 196/602 (32%), Positives = 284/602 (47%), Gaps = 103/602 (17%)
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S+FLA VSHEIRTPMN ++GM ++ + +L A +Y +TA++S L+SL+ND+LD +K
Sbjct: 312 SEFLANVSHEIRTPMNAIIGMTKLTLAEDLPEAVREYVETANSSAHTLLSLLNDILDFSK 371
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
IE+G+ + F+L +D + S +A KG+E+AI R+PE +IGD R RQII
Sbjct: 372 IEAGKFTIDRSEFNLRQTIDATMRALSERAFSKGLEVAIDYDPRIPEELIGDAIRLRQII 431
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
TNLV N++KFT+ +G + +SV L L FP
Sbjct: 432 TNLVSNAVKFTE-RGEVLLSVKL--------------------------------LRRFP 458
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
+++ T+ DTGVGI Q RIF PF Q DSS++R
Sbjct: 459 -----------------------REVRIRFTISDTGVGITPADQKRIFEPFTQVDSSSTR 495
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922
+GG+G+GL+I L+ELMGG + SEPG GS FSF + F R + +P
Sbjct: 496 NFGGSGLGLTICHELLELMGGRLELNSEPGVGSRFSFALLFPRT-RTAESRLRSAILP-- 552
Query: 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALV 982
EF G++ LV+DD ++ R L+ E+ + + A S+ V LV
Sbjct: 553 PEFAGMQVLVVDDNETNRKILRELLRSWELDAFTTSDAEEAIRLFSE--KQKVGDPFDLV 610
Query: 983 LIDK-----DVWD--KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELK 1035
LID D +D K +G E++ P I L+A E +
Sbjct: 611 LIDALMPGIDGYDLCKRLG----------------EVAGKTPPIVLMAAPSDRHHFRERE 654
Query: 1036 SD-GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNR 1094
D I + L KP+ S L E + Q+ + + ++++V+D NR
Sbjct: 655 EDLPIRSTLAKPITASSLHDSLVEAMSIAAPESQRSRSVEVLSSFHALRVMLVEDTAANR 714
Query: 1095 RVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENE 1154
++ LKK G IV GR A++K FD MD+QMP MDG Q T IR +E E
Sbjct: 715 KLVTSLLKKRGHIVVEAHNGREALEKFR-DDEFDVILMDVQMPIMDGLQTTAAIRQIERE 773
Query: 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYT 1214
G PI+AMTA +Q E+C+ GMD Y+SKP + + L
Sbjct: 774 -----------------EGYEPTPIIAMTAHAMQGDREKCLGAGMDAYISKPIDIDDLLA 816
Query: 1215 AV 1216
+
Sbjct: 817 TL 818
>gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1166
Score = 282 bits (721), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 190/615 (30%), Positives = 304/615 (49%), Gaps = 108/615 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A++AKS FLA +SHEIRTP+N ++ + +++ T L + Q +Y + ++G+ L+ +I
Sbjct: 429 AEQANLAKSDFLANMSHEIRTPLNAIINLSYLILQTPLTSKQSNYLEKIESAGRTLLGVI 488
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+G L + V F L DV+ NV ++ ++ K ++L +V+ P ++GD
Sbjct: 489 NDILDYSKIEAGHLVLDHVAFQLDDVISNVANIAIARKEDKDLDLLYHVTPSTPTQMMGD 548
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P R ++ NL N+IKFT + G + + +VD K + + L
Sbjct: 549 PMRLGAVLINLTNNAIKFT-EHGEVVI----------RVDAKQQREQHYL---------- 587
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
L +V+DTG+GI E Q R+F F
Sbjct: 588 -----------------------------------LHFSVQDTGIGISAEQQKRLFQSFS 612
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSS SR YGGTG+GL+IS+ LVELMGG + S G G+TF FT+ E + P
Sbjct: 613 QADSSISRRYGGTGLGLAISKKLVELMGGTLSLQSVVGQGTTFEFTIPLQAVE---IKPD 669
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
VP + G+R LV+DD + E+ L M V CS S +
Sbjct: 670 ---EVPSATSLNGVRVLVVDDNATAREILEEQLNAFHMEV---------CSVASGEAALD 717
Query: 975 VL---PQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
VL P+ L+L+D D+ G L + +R +G + ++R +P++ +L+ E R
Sbjct: 718 VLHHEPRPELILLD----DQMTG--LSGVETVRRLRGQINLAR-IPEVLMLSDHGREKVR 770
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK-------GKQI 1084
E ++ GI + KP+ SVL+ E +Q+ ++P + L+ G ++
Sbjct: 771 QEAEALGITHFMCKPISPSVLLETLLEVRGECLPRKQRSRRPLIHPELRDGLSAIAGARV 830
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+V+DN +N+ +A L G VT G++A+D L FD MD+QM +MDG+
Sbjct: 831 LLVEDNAINQEIAIELLGYAGVAVTPAASGQSALDLLNSEAPFDLVLMDIQMSDMDGYAT 890
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T Q+R + +P++AMTA + + E+ ++ GM D++
Sbjct: 891 TRQLRQ--------------------DPRFKTLPVVAMTAHAMVSDREKALQLGMQDHIP 930
Query: 1205 KPFEDEQLYTAVARF 1219
KP E EQL+ A+ ++
Sbjct: 931 KPIEPEQLFAALVQW 945
>gi|406830748|ref|ZP_11090342.1| PAS sensor protein [Schlesneria paludicola DSM 18645]
Length = 1117
Score = 282 bits (721), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 202/620 (32%), Positives = 301/620 (48%), Gaps = 130/620 (20%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS FLA +SHEIRTP+N ++GM +++ DT+L+ Q +Y SG+ L+S+IND+LD
Sbjct: 460 AKSDFLANMSHEIRTPLNAIIGMTELVRDTDLNTTQREYLAMVQESGESLLSVINDILDF 519
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIE+G+L E V F+L ++L + + + +A++K +ELA +V+ VP V GDP R RQ
Sbjct: 520 SKIEAGKLSLERVSFNLREMLGDTMKSLALRAHRKRLELACHVAHGVPAAVEGDPHRLRQ 579
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
I+ NLVGN+IKFT+ +G + + DV ++ D+++
Sbjct: 580 IVVNLVGNAIKFTE-RGEVVL------DVEAEYTSGDELI-------------------- 612
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
L V DTG+GI + IF F QAD+ST
Sbjct: 613 -----------------------------LHFRVTDTGIGISADQLHTIFEAFEQADTST 643
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
+R YGGTG+GL+IS LVELM G I SE GSTF F F+ + + Y P
Sbjct: 644 TRRYGGTGLGLAISSRLVELMQGRIWVESELNCGSTFHFLAKFSMSSPEAEARESTIYPP 703
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLA 980
GLR L++DD + + L +M + + A S L T ST P A
Sbjct: 704 ---MLHGLRVLIVDDNATNRRILIEILTNWQMNPVAVSCVTDAISELR-TMSTDGQP-YA 758
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK--------IFLLATSISETDRD 1032
+VL D ++ D + G E++R + + + +L + D
Sbjct: 759 MVLTDANMPDVD----------------GFELARQIHENPILCRSMVMMLTSGDRPGDIS 802
Query: 1033 ELKSDGIVTLLTKPLRLSVLI--------------GCFQEDPESSKKLQQKRKKPSLGHL 1078
G+ L KP++ S L+ GC + S++K Q
Sbjct: 803 RCGQLGVSAYLVKPIKQSELLDAILVAVGGQSSLTGCLDKSLSSARKATQS--------- 853
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
K +L+ +D+++N+++A G L+K G VT + G+ AV+ L+ + FD MD+QMPE
Sbjct: 854 ---KSVLLAEDSLINQKLAIGLLEKWGHRVTVANDGQEAVN-LSGQYIFDLALMDVQMPE 909
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG AT IR E I +G H+PILAMTA ++ E+C+ G
Sbjct: 910 MDGLDATRAIRRRE------ILTG------------VHLPILAMTAHAMKGDRERCLAAG 951
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
MDDY+ KP EQL+ A+ R
Sbjct: 952 MDDYLMKPIRAEQLFQAIER 971
>gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum]
Length = 1361
Score = 282 bits (721), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 204/613 (33%), Positives = 304/613 (49%), Gaps = 96/613 (15%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AEAA AKS F+A +SHEIRTPMNG++GM + +DT+L A Q +Y +S L+
Sbjct: 728 KEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTDLTAEQREYLTMVQSSAGSLL 787
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +KIE+GRLE + F L + L + L + +A+QKG+EL ++ V +++
Sbjct: 788 TIINDILDFSKIEAGRLELDQTEFSLRNHLYDTLKTMAWRAHQKGLELVCDIAPDVADIL 847
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDPGR RQI+TNLVGN+IKFT + G + ++V + D+ RS N+V
Sbjct: 848 VGDPGRLRQIVTNLVGNAIKFTAE-GEVILAVDI-DERRS-------------NNV---- 888
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
I + TV DTG+GIP E IF
Sbjct: 889 ------------------------------------IVIHFTVTDTGIGIPAEKLHLIFE 912
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD S +R YGGTG+GL+IS +VELMGG++ S PG GS F FT F + N
Sbjct: 913 AFSQADGSITRKYGGTGLGLTISTRMVELMGGKLRAESTPGLGSKFEFTAVFPISDAN-- 970
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
K +++ + + L+IDD +V L ++ A+S + A L
Sbjct: 971 --KEIEHI----KLKDRNTLIIDDNKTTRKVLLQMLGEYGISADSADSAETAFRLLR-AA 1023
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
S P + +D + ++ G ++ +KQ G IF++ +
Sbjct: 1024 SLRKHP-YECIFMDAQLNGRD-GFLVAEAIKQDTTIGD-------ASIFMMICGSGQRGD 1074
Query: 1032 DELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
E +S I LTKP+ L L G +S+ + + + +IL+
Sbjct: 1075 PENRSSVISGYLTKPISPLEMLEALQGRGGHTSDSANGDGSRAQSTTAPAETMAAEILLA 1134
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN+VN+R+A L++ G VT + G AV + +FD MD+QMP M GF+AT
Sbjct: 1135 EDNIVNQRLAVRLLERFGHRVTLAENGLQAV-AASETKDFDLILMDVQMPHMSGFEATNT 1193
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR E +N+ H PI+AMTA +Q E+C++ GMDDY+SKP
Sbjct: 1194 IRIREKALNK------------------HTPIIAMTAHALQKDREKCLEAGMDDYLSKPI 1235
Query: 1208 EDEQLYTAVARFF 1220
+QL + + +F
Sbjct: 1236 NADQLRSQIEKFL 1248
>gi|71906576|ref|YP_284163.1| response regulator receiver:ATP-binding region, ATPase-like:histidine
kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
gi|71846197|gb|AAZ45693.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
Length = 852
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 206/628 (32%), Positives = 315/628 (50%), Gaps = 94/628 (14%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
I+ V+ ++ K AE+A+ A+ FLA +SHEIRTPMNG++GM ++ +DT+LDA Q
Sbjct: 174 ISDVKAAESALISAKEVAESANKARGAFLANMSHEIRTPMNGIIGMTELALDTQLDAEQR 233
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
Y +T +S + L++++ND+LD +KIE+G++E E + F + D + + + + A++KG+
Sbjct: 234 HYLKTVKSSAEALLTIVNDILDFSKIEAGKMEFESLVFSMQDTVLEAVRVLAVSAHKKGL 293
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL V VP ++GDP R RQ+I NL+GN+IKFT+ +G + + V + D
Sbjct: 294 ELVADVRPEVPARIVGDPTRLRQVIINLIGNAIKFTE-RGEVALKVEV-----------D 341
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+ E+S + L ++ DT
Sbjct: 342 QSTERS--------------------------------------------VYLRFSIRDT 357
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+G+P + Q IF F QAD ST+R +GGTG+GL+IS LV+LM G+I S PG GS F
Sbjct: 358 GIGVPADKQQAIFEAFSQADVSTTRRFGGTGLGLAISARLVQLMDGKIWLESTPGQGSVF 417
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE-MAVHV 956
SFT F E S+ P + F G R LVI+D A V +Y ++ LE + V V
Sbjct: 418 SFTGRFGVQEATSVRPF-------EARFGGRRVLVIEDN---ATVGQYLVELLEQLGVQV 467
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
+ A + + S ++ VL D ++ D G L + R G +E
Sbjct: 468 SLVADGAAAVAAMERSRAMDFPYDYVLADANM-DAPAGFALA---EAWGRSGRVE----- 518
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIG--CFQEDPESSKKLQQKRKKPS 1074
I +L T D L+ G+ L KP+ + LI + P + + + + +
Sbjct: 519 KLIVMLTTENQRHDLSRLREIGVSAHLVKPIGGADLIDALALADGPGNQELSEFALSEIN 578
Query: 1075 LGHLLK----GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
+ K G IL+V+DN VN+ +A L++ V+ + G AVD H FD
Sbjct: 579 FDGVAKEDSSGLNILLVEDNPVNQELATRLLERQSHRVSLANNGAEAVDLFDSGH-FDVI 637
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP M G +AT IR E + S E L V I+AMTA+V+
Sbjct: 638 LMDMQMPVMGGIEATEAIRSREMR-RSWVVSHE----------LKPVYIIAMTANVMATD 686
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
++C++ GM+DYV+KP E+LY A+ R
Sbjct: 687 RDRCLEAGMNDYVAKPLRSEELYAALER 714
>gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
12260]
gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
12260]
Length = 1513
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 201/604 (33%), Positives = 295/604 (48%), Gaps = 111/604 (18%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A+ A+ AKS FLA +SHEIRTPMNG+LGM +L+DT+L Q + + S ++L+ L+
Sbjct: 855 ADQANRAKSDFLANMSHEIRTPMNGILGMAALLLDTDLTPEQRHFGEIVQASAENLLGLL 914
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+GRL E V F L + D+V + +++A KG+E V VP + GD
Sbjct: 915 NDILDLSKIEAGRLALEEVDFDLRSLFDDVGAALAAQAQAKGLEFLGSVEPDVPSALRGD 974
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
PGR RQ++TNL+GN++KFT R +V V+ + + +S VQ +
Sbjct: 975 PGRLRQVLTNLLGNAVKFTH---------------RGEVVVRARRVSESPERVQVR---- 1015
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
+V DTG+GIP + +F F
Sbjct: 1016 -------------------------------------FSVRDTGIGIPADKVDLLFQKFT 1038
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT-----EGERN 909
QAD+ST+R YGGTG+GL+IS+ LVELMGGEIG S G GS F FT+ F EG R
Sbjct: 1039 QADASTTRHYGGTGLGLAISKNLVELMGGEIGVHSREGVGSEFWFTLDFAKQPGGEGARG 1098
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
D + +G+RALV+DD + E+ L MAV A L
Sbjct: 1099 G----------DSRDLKGVRALVVDDNATNREILLARLTGWGMAVEAVADGPSALEVLRA 1148
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
+ V ++A++ + D E L +L++ + GGL K+ ++ +
Sbjct: 1149 ASARGVPFEMAVLDMQMPGMDGE---TLGRILREDPKLGGL-------KLVMMTSMGQRG 1198
Query: 1030 DRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP-----SLGHLLKGKQI 1084
D ++ G LTKPLR Q+ +S + K+P + L + +
Sbjct: 1199 DAHRMEEIGFSAYLTKPLR-------HQDLRDSLTAVLAGEKQPLVTRHRIRELRRRGRA 1251
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+V+DN VNR+VA G L++ G + G A+ L ++D MD+QMP MDG +
Sbjct: 1252 LLVEDNEVNRQVALGMLRRLGLRADVAEDGLGALRALE-EGDYDLVLMDVQMPGMDGVET 1310
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T IR A G + VPI+AMTA +Q E+C++ GMD ++S
Sbjct: 1311 TRAIR----------APGSRARNP-------RVPIVAMTAHAMQGDRERCLEAGMDGFLS 1353
Query: 1205 KPFE 1208
KP +
Sbjct: 1354 KPLD 1357
>gi|307151519|ref|YP_003886903.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
gi|306981747|gb|ADN13628.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
Length = 1426
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 205/607 (33%), Positives = 302/607 (49%), Gaps = 103/607 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AEAA+ AKS+F+A +SHEIRTPMNGV+GM +L+DT L Q D +T NSG L+
Sbjct: 771 KREAEAANKAKSEFVAMMSHEIRTPMNGVIGMTGILLDTPLSELQRDCVETIRNSGDALL 830
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+IND+LD +KIESG+LE E PF+L + +++ L L + KA +KG+ELA PE +
Sbjct: 831 MIINDILDFSKIESGKLELEEQPFNLRESIESSLDLLAPKAAEKGLELAYIFDPNTPETI 890
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GD R RQI+ NL+GN IKFT +KG + V+V + Q KS
Sbjct: 891 LGDVTRLRQILVNLIGNGIKFT-EKGEVVVNVS--------------------SYPQEKS 929
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
S P T T+E V DTG+GI E + ++F
Sbjct: 930 -------STAP----------------TYTIE--------FAVTDTGIGIAPERKDKLFK 958
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F Q DSST+R YGGTG+GL IS+ L +LMGGEI S+ G GSTF FT+T ++L
Sbjct: 959 AFSQVDSSTTRQYGGTGLGLVISKRLTQLMGGEISVDSQQGKGSTFKFTITAEAFHSSTL 1018
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
W++Y+ ++ R L++DD ++ Q M +S Q A ++
Sbjct: 1019 --AWEKYI--ITHLANKRVLIVDDNQTNRKILILQTQSWGMIPTAVDSGQKAIEIIAQGE 1074
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
+ L ++D + + G++L +L+Q +NLP + LL+++
Sbjct: 1075 T------FDLAILDMQMPSLD-GVMLAQILRQYPS------GKNLP-LILLSSAGQLLPI 1120
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK-PSLGHLLK-----GKQ-- 1083
+ LK D + L+KP+ + L + ++ K+ R P G +L G+Q
Sbjct: 1121 ERLKVD-FSSTLSKPIHQTQLYNALVQALQTQTKITLDRPSVPENGSILSKYKDLGQQHP 1179
Query: 1084 --ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
IL+ +DN VN++V + L++ V G + L ++D MD+QMPEMDG
Sbjct: 1180 LRILIGEDNAVNQKVIQQILQRMSYRADLVANGLEVIQALK-LQSYDVVLMDIQMPEMDG 1238
Query: 1142 FQAT-WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
+ T W I + G I+AMTA+ +Q E C+ GMD
Sbjct: 1239 LETTRW--------ITQTYHQGSRPR------------IIAMTANAMQGDQEHCLAAGMD 1278
Query: 1201 DYVSKPF 1207
DY+SKP
Sbjct: 1279 DYLSKPI 1285
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L K++L+VDDN NR++ + G I T VD G+ A++ + FD +D+QMP
Sbjct: 1028 LANKRVLIVDDNQTNRKILILQTQSWGMIPTAVDSGQKAIEIIAQGETFDLAILDMQMPS 1087
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
+DG +R Q SG++ + + +PI + +K
Sbjct: 1088 LDGVMLAQILR--------QYPSGKNLPLILLSSAGQLLPI-------------ERLKVD 1126
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
+SKP QLY A+ +
Sbjct: 1127 FSSTLSKPIHQTQLYNALVQ 1146
>gi|359462985|ref|ZP_09251548.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 1076
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 202/628 (32%), Positives = 312/628 (49%), Gaps = 89/628 (14%)
Query: 599 AQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLD 658
A++ N E+ K RA+AA KS+FLA +SHE+RTPMN V+GM +L T LDA Q D
Sbjct: 528 AKLRNVNAELQTAKDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSLDAQQQD 587
Query: 659 YAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIE 718
+ T +SG L+ LIND+LD +KIE+G+LE E PF+L ++ L L + +A +KG+E
Sbjct: 588 FVDTIRSSGDALLCLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLE 647
Query: 719 LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778
+A +P ++GD R RQ++ NL+ N +KFT D G + V V DV + +++D+
Sbjct: 648 IAYLADPDLPCGIVGDVTRLRQVLVNLLTNGVKFT-DNGEVIVYVK---DVTA--EMQDR 701
Query: 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTG 838
+ L S +++ V+DTG
Sbjct: 702 ---EGLGSEGQSPRRLFQ-----------------------------------FAVKDTG 723
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
+GIP + R+F F Q DSST+R YGGTG+GL+IS+ L ELMGG+I SE G GSTFS
Sbjct: 724 IGIPEDRLNRLFQSFSQVDSSTTRKYGGTGLGLAISKRLCELMGGKIWVDSEIGIGSTFS 783
Query: 899 FTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
FT+ + P + D++ +G R L++DD ++ M A
Sbjct: 784 FTIAAPIVDTFDCAP-----IHDLAPLKGQRLLIVDDNLTNRKILTIFADIWGMHSQSAP 838
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
S A L S L ++D + + + GL L RR GL+ ++LP
Sbjct: 839 SGPAALELLRGRSS------FDLAVVDMQMPEMD-GLTLA------RRIHGLQKYKDLPL 885
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ L + + E + +L KP++ ++L+ E+++ + R +PS
Sbjct: 886 VMLSSLGV-EAISTPMDKSLFYAILNKPIQEAQLSAILVRAVTRQSENTQNSELDRPQPS 944
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
K +L+ +D +VN++VA LK+ G + G+ ++ L +D MDL
Sbjct: 945 TNS--KTLHLLLAEDVVVNQKVALLILKQLGYEADVANNGKEVLEALH-RQPYDVVLMDL 1001
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMPEMDG A+ I ++ S E+ I+A+TA+ +Q E+C
Sbjct: 1002 QMPEMDGLTASRAI--------QETWSPEARPY-----------IIALTANAMQGDREKC 1042
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
++ GM DYVSKP E+L A+ R+ +S
Sbjct: 1043 LEAGMQDYVSKPIRSEELKAALERYLLS 1070
>gi|347731876|ref|ZP_08864962.1| response regulator [Desulfovibrio sp. A2]
gi|347519345|gb|EGY26504.1| response regulator [Desulfovibrio sp. A2]
Length = 1531
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 199/637 (31%), Positives = 303/637 (47%), Gaps = 126/637 (19%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K AE A KS FLA +SHEIRTPMN ++G+ + + T LD Q DY + S
Sbjct: 714 ELLRAKEMAEEATRLKSDFLANMSHEIRTPMNAIIGLAHLALKTNLDPRQADYVRKIRAS 773
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G+ L+ ++ND+LD +KIE+G+L E F L VLD V +L S KA KG+E + V+
Sbjct: 774 GQHLLGILNDILDFSKIEAGKLTVENTEFELETVLDTVANLVSEKAAAKGLEFVLDVAAD 833
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP V+ GDP R QI+ N N++KFT+ +G I V V + +EK+
Sbjct: 834 VPPVLRGDPLRLGQILINYANNAVKFTE-RGEIVVHV--------------EAVEKTGQ- 877
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ L F V D TG+G+ E +
Sbjct: 878 ---------DALLRFAVRD-------------------------------TGIGLTPEQK 897
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F F QAD+ST+R YGGTG+GL+I++ L +LMGG++G S PG GSTF FT G
Sbjct: 898 ARLFVSFQQADTSTTRKYGGTGLGLAIAKKLADLMGGDVGVESTPGGGSTFWFTARLGLG 957
Query: 907 E-RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
R +L P+ + RGLR LV+DD V + L+ + A+ + A
Sbjct: 958 SGRRTLVPRI--------DLRGLRVLVVDDNPQARTVLAHMLEGMTFRTVEADGGESALR 1009
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF--LLA 1023
+ + + +V +D W Q GLE +R + + L
Sbjct: 1010 VMDEARAAGA--PFGMVFLD---W-------------QMPGMDGLETARRIRALAPELPV 1051
Query: 1024 TSISETDRDEL----KSDGIVTLLTKPLRLSVLI----------------GCFQEDPESS 1063
++ R+E+ + G+ +L KP++ S+L G E P +
Sbjct: 1052 AIVTAHGREEIFAASEGVGVDAVLVKPVQPSLLFDTAMRLLGAAQPASRPGGESESPSAR 1111
Query: 1064 KKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP 1123
Q + P+ L+G ++L+V+DN +NR VA G L + G + G AV ++
Sbjct: 1112 SPGAQPGEPPAQLQGLRGARVLLVEDNELNREVALGLLGEAGLAPDAAEDGAQAV-RMVM 1170
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
++D MD+QMP MDG++AT IR +G +PI+AMT
Sbjct: 1171 EGDYDLVLMDVQMPVMDGYEATRAIRR--------------------TLGPDRLPIVAMT 1210
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
A+ +Q E C+ GM+D+V+KP + ++L+ A+ R+
Sbjct: 1211 ANAMQGDREACLATGMNDHVAKPIDPDELFAALIRWL 1247
>gi|406998814|gb|EKE16674.1| hypothetical protein ACD_10C00859G0003 [uncultured bacterium]
Length = 996
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 205/641 (31%), Positives = 306/641 (47%), Gaps = 102/641 (15%)
Query: 583 ITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLG 642
+ L+G I + A+VE +++ + AEAA AKS FLA +SHEIRTPMNGV+G
Sbjct: 331 VAALLGTIIDITARKQAEVE-----ILQARDVAEAASQAKSDFLANMSHEIRTPMNGVIG 385
Query: 643 MLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLD 702
M ++ +DT L Q +Y +S + L+++IND+LD +KIE+G+L+ E + F LH V+
Sbjct: 386 MTELALDTALTEEQREYLDIVKSSAESLLAIINDILDFSKIEAGKLQVEEISFDLHRVIA 445
Query: 703 NVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVS 762
+ L + +A++K +EL V +VP V GDP R RQ++ NL+GN+IKFT+ +G I +
Sbjct: 446 DTLKTLALRAHEKNLELISEVMPKVPCHVFGDPSRIRQVLVNLLGNAIKFTE-QGEISLR 504
Query: 763 VHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTM 822
L VVD
Sbjct: 505 TEL-----------------------------------IKVVD----------------- 512
Query: 823 EQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMG 882
G + V DTGVGI + Q IF F Q D+ST+R +GGTG+GLSISR LV LMG
Sbjct: 513 ---GNAYIHFAVSDTGVGIAPDKQELIFEAFSQEDTSTTRRFGGTGLGLSISRHLVALMG 569
Query: 883 GEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEV 942
GEI S+ G GSTF F++ + L+P +Q E RG LV+DD + V
Sbjct: 570 GEIWLESQLGRGSTFHFSLKLAI-DTQPLEPITRQI-----ELRGRHILVVDDNATNRRV 623
Query: 943 TRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLK 1002
L ++ +A S +A + C+ + D + D ++ + Y L
Sbjct: 624 LSGLLAAWDVKTQLAESGAMALDIMR--CAETSF--------DCIILDAQMPAMDGYELA 673
Query: 1003 QQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQE 1058
+Q R LP + +L++S D ++ GI +KP+ LS L F
Sbjct: 674 RQLRAE----HPQLPPMLMLSSSAMRGDEQRCQAAGIDAYFSKPISSEDLLSALRRFFAM 729
Query: 1059 DPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
+ + L L + IL+V+D+ VN+++A G L+K G T + G+ A+
Sbjct: 730 GGQPLATRHTLLNRHVLRELQRSLNILLVEDHPVNQKLALGLLEKWGHQATLANNGQEAL 789
Query: 1119 DKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
+ FD MD+QMP M G +AT +IR +E + P
Sbjct: 790 -AIFSESAFDLILMDMQMPVMGGLEATLRIRQME----------------LADESRRRTP 832
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
I+AMTA +Q E C+ GMD+Y+SKP + +L + F
Sbjct: 833 IIAMTASAMQGDREACLGVGMDEYLSKPIKARELLEKLLSF 873
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT-PPHNFDACFMDLQMP 1137
L+G+ ILVVDDN NRRV G L + G A+D + +FD +D QMP
Sbjct: 606 LRGRHILVVDDNATNRRVLSGLLAAWDVKTQLAESGAMALDIMRCAETSFDCIILDAQMP 665
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG++ Q+R ++ P+L +++ ++ ++C
Sbjct: 666 AMDGYELARQLRAEHPQLP---------------------PMLMLSSSAMRGDEQRCQAA 704
Query: 1198 GMDDYVSKPFEDEQLYTAVARFFMSG 1223
G+D Y SKP E L +A+ RFF G
Sbjct: 705 GIDAYFSKPISSEDLLSALRRFFAMG 730
>gi|344338545|ref|ZP_08769477.1| integral membrane sensor hybrid histidine kinase [Thiocapsa marina
5811]
gi|343801827|gb|EGV19769.1| integral membrane sensor hybrid histidine kinase [Thiocapsa marina
5811]
Length = 763
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 204/634 (32%), Positives = 314/634 (49%), Gaps = 100/634 (15%)
Query: 593 AAINRIAQVENDYHEMMEL-----KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
AA+NR + E + E K +AE+A +AK QF+A +SHEIRTPMNGVLG+L+ML
Sbjct: 218 AALNRDLEREVEERRATEAALVIAKEQAESASIAKGQFVANMSHEIRTPMNGVLGLLEML 277
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
L A Q AH S + L+++INDVLD +KIESGRL+ E +PF L ++++V L
Sbjct: 278 SHERLSAEQRGLVDVAHTSAESLLNVINDVLDFSKIESGRLDFERIPFDLRRLVEDVAGL 337
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
F++ A K +EL +V +P V+GDP R RQI+TN++GN++KF+ L+
Sbjct: 338 FTASARSKQLELVCFVPPGLPARVMGDPHRLRQILTNVLGNAVKFS-----------LSG 386
Query: 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR 827
+V +VDV E+ GR
Sbjct: 387 EVALRVDV---------------------------------------------CAEEAGR 401
Query: 828 IKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF 887
+ + DTG+G+ E R+F PF+QAD ST+R +GG+G+GL+IS+ L+ELMGG+I
Sbjct: 402 SRFSFEISDTGIGMTPEQLARLFKPFVQADGSTTRRFGGSGLGLAISKDLIELMGGDIQV 461
Query: 888 VSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHL 947
S G GS F + F + + + +P D + G R L +DD + E+ ++L
Sbjct: 462 ESTFGRGSRFLVRLPF-DHQSETAEPT------DGAGLEGRRILCVDDNATNLEILGHYL 514
Query: 948 QRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRR 1006
Q +A A L + P A VL D+ E+ GL L + R
Sbjct: 515 QEWGVAYEAVTDGPTALERLVRAQARD-RPFEAAVL---DLQMPEMDGLALA---RAIRA 567
Query: 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKL 1066
G+ R + LL++ E ++ + +L+KP+R +L + + + +
Sbjct: 568 TPGIAAVR----LILLSSGGCPEPVGE-AAETVDLVLSKPVRQGLLRDALAQVLVTGRPI 622
Query: 1067 QQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN 1126
P L + G+ +L+ +DN VN++VA G L + G V+ G A+++L
Sbjct: 623 PDPGATPILDRPMTGR-VLLAEDNPVNQQVARGMLMRLGIEADLVENGAEAIERLA-SGR 680
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
+DA MD+QMP +DG AT R E+ G S H+PI+AMTA+
Sbjct: 681 YDAVLMDMQMPVLDGLGATRHWREREHR------EGRS-----------HIPIIAMTANA 723
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ A + C++ GMDDY++KP + L + R+
Sbjct: 724 MAADRDACLEAGMDDYLAKPVKIGALRETLRRWL 757
>gi|377811302|ref|YP_005043742.1| hypothetical protein BYI23_D007090 [Burkholderia sp. YI23]
gi|357940663|gb|AET94219.1| hypothetical protein BYI23_D007090 [Burkholderia sp. YI23]
Length = 1311
Score = 281 bits (719), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 205/620 (33%), Positives = 304/620 (49%), Gaps = 96/620 (15%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
Q E +YH + K +A+AA AKS FLA +SHEIRTPMN VLGML ++ T LD Q DY
Sbjct: 559 QYELEYH-LRNAKEQADAASAAKSTFLANMSHEIRTPMNAVLGMLHLVQMTSLDHRQHDY 617
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
A + K L+SL+ND+LD +KIE+G+L+ + PF +++ + + S K +E+
Sbjct: 618 VSKAVTAAKSLLSLLNDILDYSKIEAGKLQLDSHPFEPEKLMEELGIVLSGNQGAKDVEV 677
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+ +P V++GD R +Q++ NL GN++KFT G I VSVH D
Sbjct: 678 LFDLDPSLPAVLVGDSFRLQQVLINLAGNALKFTS-AGQIVVSVHRLD------------ 724
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
T+S P E+ R++ + V D+G+
Sbjct: 725 -----------------TVSAAP--------------------EETVRVR--IAVSDSGI 745
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GI E RIF F QA++STSR YGG+G+GL IS+ LV +MG ++ S G GS F F
Sbjct: 746 GISEEQLGRIFEGFTQAEASTSRRYGGSGLGLVISKRLVAMMGSQLEVESRLGEGSRFWF 805
Query: 900 TVTFTEGERNSLDP-KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
+T G + P + Q+ PD G L+ DD +I E+ ++ L V
Sbjct: 806 DITL--GVDTADAPARNQRAFPD----HGAHILIADDNAIAGEILSRTVRSLGWHADVVT 859
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
S A + ++D ++ +AL+ W + GL KQ G R P
Sbjct: 860 SGTEAVARIADAAHSAAPYDIALL-----DW-RMPGLDGLNAAKQVSAMNG----RVAPP 909
Query: 1019 IFLLATSISETDRDELKSDG---IVTLLTKPLRLSVLIGCFQED--PESSKKLQQKRKKP 1073
+ LL T+ S E + G LTKP+ L+ + ++ L + +
Sbjct: 910 LVLLVTAFSREVLRESQEHGAAPFAGFLTKPVTPKQLVAAIRASLPSHAAPALHETQPVA 969
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPH-NFDACFM 1132
+ L+G +LVV+DN +NR+VAEG L+ GA VT + GR VD++ +FDA M
Sbjct: 970 ARAQRLEGLALLVVEDNALNRQVAEGVLRAEGANVTLAESGREGVDRIMAAQGSFDAVLM 1029
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP++DG +AT IR A A +PI+AMTA+ A +
Sbjct: 1030 DVQMPDLDGLEATRLIR----------ADSRFDA----------LPIIAMTANASGADRD 1069
Query: 1193 QCMKCGMDDYVSKPFEDEQL 1212
C++ GM+D+V KP + E+L
Sbjct: 1070 ACLQAGMNDHVGKPIDVERL 1089
>gi|427711822|ref|YP_007060446.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
gi|427375951|gb|AFY59903.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
Length = 896
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 205/600 (34%), Positives = 302/600 (50%), Gaps = 100/600 (16%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
K+ F+AT+SHEIRTP+N ++GM +L++T LDA Q DY +T ++L+++IN++LD +
Sbjct: 366 KTSFMATMSHEIRTPLNAIVGMTGLLLETRLDAEQRDYVETVRLGSENLLTVINEILDFS 425
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
K+E+ ++ E V F+L +D V+ L + A++K +ELA V VP + GD R RQ+
Sbjct: 426 KLEAHEMQLEMVNFNLQACVDEVVDLLAGNAHRKNLELAALVEYDVPAWLQGDESRLRQV 485
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NLV N++KFT V + V+ SL + Q D L
Sbjct: 486 LVNLVNNALKFTA--------------------VGEVVIRVSLAAPQAGED-----LGPS 520
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
P+ + + +L V+DTG+GIP A ++F PF Q D+ST+
Sbjct: 521 PIGEE--------------------QTRLQFKVQDTGIGIPAAALPKLFQPFTQVDASTT 560
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R YGGTG+GL+I R +VE+MGGEIG S G GS F F + F G + DP +
Sbjct: 561 RKYGGTGLGLAICRQIVEMMGGEIGVESTEGVGSCFWFEIPFPLG--TAADP-----LVA 613
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
G R L++DD E++RYHL+ + V A S Q A L+ ++ + +A
Sbjct: 614 PPGLVGKRVLLVDDNQTNLEISRYHLRHWGLEVLTAMSAQAALEVLTHNHASGLGVDIA- 672
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD---RDELKSDG 1038
L+D + D + GL L ++Q L ++ +P + L TS+ +TD R E +
Sbjct: 673 -LLDMQMPDVD-GLTLGRQIRQ------LAWTQTIPLVML--TSLGQTDPQCRAEFDA-- 720
Query: 1039 IVTLLTKPLRLSVLIG---CFQEDPE---SSKKLQQKRKKPSLGHLLKGKQILVVDDNMV 1092
L KP+R S L P S + + PS H L+ ILV +DN+
Sbjct: 721 ---YLVKPVRPSRLFNTLIALLTPPAATLSPTPISEVPITPS-EHSLR---ILVAEDNIT 773
Query: 1093 NRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLE 1152
N++VA L G V G AV +D FMD QMPEMDGF+AT QIR E
Sbjct: 774 NQKVALRQLNNLGYHADVVSNGLEAVLAWE-TVGYDLIFMDCQMPEMDGFEATRQIRAKE 832
Query: 1153 NEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
+Q A+ HVPI+A+TA+ + ++C GMDDY+SKP + L
Sbjct: 833 ----QQTAT--------------HVPIIALTANAMPEDRQRCYGAGMDDYLSKPVRKQDL 874
>gi|428215820|ref|YP_007088964.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004201|gb|AFY85044.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1860
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 205/608 (33%), Positives = 309/608 (50%), Gaps = 89/608 (14%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+FLAT+SHEIRTPMN V+GM +L+DT L+A Q ++ +T SG L+++IND+LD +
Sbjct: 1155 KSEFLATMSHEIRTPMNAVIGMTGLLLDTPLNADQREFVETIRTSGDGLLTIINDILDFS 1214
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIESG+++ E PF+L ++ L L +SKA +K +ELA ++ + PE +IGD R RQI
Sbjct: 1215 KIESGKMDLEEHPFNLRTCIEECLDLVASKAAEKQLELAYLLAPQTPEGIIGDVTRLRQI 1274
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL+ N++KFTQ+ G V+V+ V + G
Sbjct: 1275 LVNLLSNAVKFTQE-GETIVAVN--------------------------GTFVQDAQFGN 1307
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
P+ T + G ++ +V+DTGVGIP + R+F F Q DSST+
Sbjct: 1308 PMA----------------TATEGGVYQIHFSVKDTGVGIPPDRMDRLFKSFSQVDSSTT 1351
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE-GERNSLDPKWQQYVP 920
R YGGTG+GL+I++ L ELMGG + S+ G GSTF FT+ T E S P+
Sbjct: 1352 RKYGGTGLGLAIAKRLSELMGGTMWVESQVGVGSTFHFTIQATATSEFASATPE-----D 1406
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLA 980
+V + G L++DD + + Q M + A S + L +T T +
Sbjct: 1407 EVPQLTGKHLLIVDDNATNRLILTRQAQSWGMIPYAAASGPEGLAQLQETADT----RFD 1462
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV 1040
L ++D + + + GL L ++Q L LP I L + R+ D
Sbjct: 1463 LAILDMQMPEMD-GLALAAAIRQ------LPGGDRLPLIMLTSLGWQPVSREAAGID-FA 1514
Query: 1041 TLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHL---LKGK---QILVVDDN 1090
L+KP++ S +LIG F S++K + + PS LK +IL+ +DN
Sbjct: 1515 AFLSKPIKQSQLFDILIGIFSR--RSNRKDSRVHRVPSFPKQSIPLKSDRPLKILLAEDN 1572
Query: 1091 MVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRH 1150
+VN++VA L++ G G A+ L ++D MD+QMPEMDG +AT RH
Sbjct: 1573 VVNQKVALRILERMGYRADVASNGLEAIAALN-RQSYDVILMDVQMPEMDGLEAT---RH 1628
Query: 1151 LENEINEQIASGESSAEMFGNVGLWHVP-ILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
+ E + ++ P I+AMTA+ +Q E C++ GMD+Y+SKP
Sbjct: 1629 ICKEWT-----------LRRDISPMGRPWIIAMTANAMQGDREICLQAGMDNYISKPIRM 1677
Query: 1210 EQLYTAVA 1217
E L A+A
Sbjct: 1678 EALAQALA 1685
>gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 1052
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 204/634 (32%), Positives = 320/634 (50%), Gaps = 101/634 (15%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
E + RAE A+ AKS+FLA +SHEIRTPMN V+G +L+D+ LD Q+DYA+T SG+
Sbjct: 495 EARDRAERANAAKSEFLANMSHEIRTPMNAVIGFTDLLLDSGLDDIQMDYAKTIKQSGEG 554
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
LISLIND+LD +KIE+G L+ E + F + ++ + + +K IE+ ++ D VP+
Sbjct: 555 LISLINDILDFSKIEAGDLDFEEIDFDPELLAYDICDMIRPRIGEKPIEILCHIGDTVPD 614
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
+ GDP R RQ++TNL+ N+ KFT+ A ++ +DV++
Sbjct: 615 HIKGDPTRVRQVLTNLMANAPKFTE-----------AGEIELSLDVEE------------ 651
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
E GR+KL +V DTG+GI I
Sbjct: 652 ---------------------------------EDEGRVKLHASVRDTGIGIAGNKLELI 678
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
F PF QAD ST+R YGGTG+GLSI + + LMGG++ S+ G GS F FT + E
Sbjct: 679 FDPFQQADGSTTRKYGGTGLGLSICKQISRLMGGDVWAESDEGKGSIFHFTAWLGKSETK 738
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
+ P Y P G +AL++DD ++ +L+ + + + + N
Sbjct: 739 AARP----YTP--VSLSGKKALLVDDNDTNLKILAAYLKPVGIRLVLLNK---------- 782
Query: 970 TCSTSVLPQLALVLIDKD-----VWDKEIGLVLHYMLKQQRR-----KGGLEIS-RNLPK 1018
VLP L + ++D + D ++ ++ Y + +Q R GL+ S R+LP
Sbjct: 783 --GVDVLPLLESAIGEQDPFDICITDIQMPIMSGYEVARQIRLFESPVSGLQTSIRSLPL 840
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLS--------VLIGCFQEDPESSKKLQQKR 1070
+ L +S+ D + G L KP+R +L D +S + +
Sbjct: 841 MAL--SSVRGQDAKRCREVGFDGFLGKPIRRERLYRMLERILGAAVAGDQRNSVEQGEIM 898
Query: 1071 KKPSLGHLLKGK-QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN-FD 1128
+ S+ +K +IL+ +DN VN+++A+ LKK G V + GR A++ L N F
Sbjct: 899 TQYSVREEMKRSVRILLAEDNPVNQKLAKIMLKKAGYQVEVANNGREAIEILMASRNGFH 958
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
FMD+QMPEMDGF AT +IR LE +E + + + + +PI+AMTA ++
Sbjct: 959 LIFMDVQMPEMDGFTATREIRRLE---SEHVLKPPQCTDFHAST-IARIPIIAMTAHAMK 1014
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
E C+ GMDDY++KP + E +++ V ++ ++
Sbjct: 1015 GDREACIDAGMDDYITKPIKREGVFSIVEKWALA 1048
>gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.]
Length = 1266
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 194/620 (31%), Positives = 308/620 (49%), Gaps = 99/620 (15%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+++ K +AE A AK +FLA +SHEIRTPMNG++ ++L + ++ Y + S
Sbjct: 505 ELIKAKEKAEVATGAKDEFLANMSHEIRTPMNGIIAASELLSNEDISDKAKHYLRIITTS 564
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIE+G+L+ E F + DV+D ++++F + ++K IEL + +
Sbjct: 565 AYSLLEIINDILDVSKIEAGKLDLEIRDFKIEDVIDKLVNMFFHRTSKKFIELLVDIDPE 624
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P + GD R QI+ NLV N++KFT+ G I V V
Sbjct: 625 IPRALRGDELRLYQILVNLVSNAVKFTKKGGIIIVGV----------------------- 661
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
K L+N + + G +KL ++DTG+GI E
Sbjct: 662 ---------------------------KELENRSA--ESGEVKLRFFIKDTGIGIAHENI 692
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+IF PF QAD+ST+R YGGTG+GL I + LVE+MGGEI SEP GSTFSFT F
Sbjct: 693 EKIFEPFSQADASTTRNYGGTGLGLCICKQLVEMMGGEIRVESEPEKGSTFSFTAIFHRQ 752
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+ + ++++P +GL LV+DD + L+ V +S Q +
Sbjct: 753 PKKT----EREFIPPHG-LQGLNVLVVDDCKDSQNIMEKMLESFGFKVESISSAQASLQR 807
Query: 967 LSDTCSTSVLPQLALVLIDKDVW--DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
L + T P + LV++D W G+ +++ ++ N+P I + A
Sbjct: 808 LRED-ETRENP-IDLVMMD---WLMPGLDGIEASSIIRD-------DLKLNVPIIMMTAF 855
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKPSLGHL---- 1078
+ET + G+ LTKP+ S L + + +K L++K+ + +
Sbjct: 856 G-NETQMLYAEKVGVNGFLTKPICQSTLFDAIMDAFGKKRAKSLKEKKHITTRVSIHKKR 914
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
LKG ++LV +DN+ N+ +A L++ G +V V+ G+ AVD + FDA MD+QMP
Sbjct: 915 LKGFRVLVAEDNITNQEIALAILEEAGLVVKIVNNGKEAVDAVRESQ-FDALLMDIQMPV 973
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG++AT QIR + +PI+AMTA ++ E+C+K G
Sbjct: 974 MDGYEATRQIRK--------------------DAEFKDLPIIAMTAHAMKGDEEECLKAG 1013
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
M+ Y+ KP + L+ + R
Sbjct: 1014 MNGYIPKPVSQDMLFNVLWR 1033
Score = 47.0 bits (110), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 25/148 (16%)
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL----TPPHNFDACFM 1132
H L+G +LVVDD ++ + E L+ G V + +A++ +L T + D M
Sbjct: 764 HGLQGLNVLVVDDCKDSQNIMEKMLESFGFKVESISSAQASLQRLREDETRENPIDLVMM 823
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D MP +DG +A+ IR ++ L +VPI+ MTA +
Sbjct: 824 DWLMPGLDGIEASSIIRD--------------------DLKL-NVPIIMMTAFGNETQML 862
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
K G++ +++KP L+ A+ F
Sbjct: 863 YAEKVGVNGFLTKPICQSTLFDAIMDAF 890
>gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614]
gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
Length = 847
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 212/626 (33%), Positives = 304/626 (48%), Gaps = 101/626 (16%)
Query: 607 EMMELKARAEAADVA------KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
E++ + A A DVA KS FLAT+SHEIRTPMNGV+G+ +L T+LD Q YA
Sbjct: 312 EVVARRELAAARDVALEASRSKSTFLATMSHEIRTPMNGVIGLTGLLEATDLDERQRQYA 371
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
+ ++ L+++IND+LD +K+E+GRL+ E + F L V++ V L + A KG+EL
Sbjct: 372 EGVSSAANALMTIINDILDFSKVEAGRLDLETIDFDLVQVVEEVAELIAEPAQSKGLELL 431
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
Y S +P + GDP R RQ++ NL N++KFT +G + V L
Sbjct: 432 AYCSPELPTCLRGDPSRLRQVLLNLASNAVKFTA-RGEVLVRASL--------------- 475
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
E SL + VV R++ V DTG+G
Sbjct: 476 EASLQDGPEAGAEAG-------VVVRFE-------------------------VTDTGIG 503
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
+ + R+F PF QADSST+R YGGTG+GL+IS LV MGG+IG S PG GSTF FT
Sbjct: 504 VEEADRERLFEPFSQADSSTTRRYGGTGLGLAISEHLVTAMGGQIGVDSRPGLGSTFWFT 563
Query: 901 VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
+ G L + D++ GLR LV+DD + L + V +A
Sbjct: 564 LPL--GLAEDLSASTPRGTEDIA---GLRVLVVDDNQTNRMILHDQLTAWGLHVDLAEDG 618
Query: 961 QLACSYLSDTCSTS---VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
A + L+D T L L L + D D GL L + + GL ++
Sbjct: 619 PHALAALADAHRTHHPFDLAVLDLCMPDMD------GLELAHRISSDPTLTGLAMA---- 668
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH 1077
L TS E + + ++ GI +TKP++LS L Q D +++ P+
Sbjct: 669 ----LLTSGGEISQTDARAVGITASMTKPVQLSRLRATLQ-DIIGTRRPHTPLHIPTTP- 722
Query: 1078 LLKGK-QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
G+ +ILVV+D +N+ VA G L+ G D G A+ + +DA MD+QM
Sbjct: 723 --AGRGRILVVEDGEINQLVAVGILEHLGYTTDVADNGVTALSAMG-RTRYDAVLMDVQM 779
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P MDG+QAT +IR LE +++ H PI+AMTA ++C+
Sbjct: 780 PGMDGYQATREIRRLEGDVH-------------------HTPIIAMTASATNDDRDRCLA 820
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFFMS 1222
GMDDY+SKP L T ++R+ S
Sbjct: 821 AGMDDYISKPVNPHTLETVLSRWATS 846
>gi|343508478|ref|ZP_08745820.1| PAS domain-containing protein [Vibrio ichthyoenteri ATCC 700023]
gi|342793792|gb|EGU29580.1| PAS domain-containing protein [Vibrio ichthyoenteri ATCC 700023]
Length = 1803
Score = 280 bits (717), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 202/654 (30%), Positives = 313/654 (47%), Gaps = 106/654 (16%)
Query: 574 INASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEI 633
I+ I + TL +F + + + E+M K +AE A AKS FLA +SHEI
Sbjct: 937 IDLEIAISEATLAGEQLFTGIVRDATERKEAERELMLAKQKAEEATQAKSDFLANMSHEI 996
Query: 634 RTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFV 693
RTPMN ++GM + M T+L+ Q DY S + L+ +IND+LD +KIE+G+L+ E
Sbjct: 997 RTPMNAIIGMSYLAMQTQLNKKQADYVNKIQTSAESLLGIINDILDFSKIEAGKLDLEQT 1056
Query: 694 PFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFT 753
F L +DN++ + S + +K +EL + + ++P +IGDP R QI+ NL N+IKFT
Sbjct: 1057 EFDLESTIDNLVQVVSQRTQEKDLELLVDLDPQLPTHLIGDPLRLGQILLNLANNAIKFT 1116
Query: 754 QDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENF 813
D+G I V L +++ D ++E
Sbjct: 1117 -DRGEIIVKAEL-------IELGDDIVEARF----------------------------- 1139
Query: 814 KMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSI 873
+V DTG+G+ E R+F F QAD+ST+R YGGTG+GL+I
Sbjct: 1140 -------------------SVSDTGIGMTQEQMARLFQSFSQADASTTRKYGGTGLGLTI 1180
Query: 874 SRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVI 933
S+ L E+M G I SE G GSTF FT F S + QQ +P S +G+ L++
Sbjct: 1181 SKTLSEMMNGSIWVESESGQGSTFFFTAQFG----ISSEYPQQQVLPPQS-MQGVSVLIV 1235
Query: 934 DDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD--K 991
DD E+ L VA S A + T+ Q +I D W K
Sbjct: 1236 DDSVAAREILFSLCDSLNFTADVACSGAEAL----EKIQTAEQNQQKFDVILSD-WKMPK 1290
Query: 992 EIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSD----GIVTLLTKPL 1047
G+ L ++ + +G + + + F++ T+ D+DE+ + I +TKP+
Sbjct: 1291 MDGIELGRQIEALQERGEIAAAPH----FVMVTAY---DKDEMLAQRQEVDIAASMTKPV 1343
Query: 1048 RLSVLIG----CFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKK 1103
S L+ ++ +SK + S+ + + G ++L+V+DN +N+ +A L
Sbjct: 1344 SSSTLLDTVSRVMTKEGIASKTKAGNKLDTSIANGIAGARVLLVEDNAINQEIATELLHM 1403
Query: 1104 HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163
G VT + G+ AVD L +FD MD+QMP MDG+QAT IR
Sbjct: 1404 VGVEVTAANNGQEAVD-LVEAQSFDLVLMDIQMPVMDGYQATQAIR-------------- 1448
Query: 1164 SSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
N G + +PI+AMTA+ + E+C+ GM+D++ KP Q++ A+
Sbjct: 1449 -------NTGRFDDLPIIAMTANAMSGDKEKCLAAGMNDHLPKPINPNQVFQAL 1495
>gi|254409902|ref|ZP_05023682.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182938|gb|EDX77922.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1258
Score = 280 bits (717), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 205/613 (33%), Positives = 309/613 (50%), Gaps = 79/613 (12%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A AA AKS+FLAT+SHEIRTPMNGV+GM +L+DT+L + Q ++ T +SG L+++I
Sbjct: 541 ALAATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTQLTSQQQEFVTTIRHSGDTLLTII 600
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIESG+LE E V F L ++N L L ++KA+ K +ELA ++ + P ++IGD
Sbjct: 601 NDILDFSKIESGKLELEEVSFDLQVCIENCLDLLAAKASDKNLELAYQITPQTPRMIIGD 660
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQI+ NL+ N++KFTQ G + VSV+ + L+ Q + +
Sbjct: 661 VTRLRQILVNLLSNAVKFTQ-SGEVIVSVN----------------AEKLDYEQWERPET 703
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
+L+ P + + ++ RI+ V+DTG+GIP E R+F PF
Sbjct: 704 KTSLT--PRITPSVATPHY-------------RIQF--AVKDTGIGIPPERLNRLFQPFS 746
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
Q DSST+R YGGTG+GL+I + L E+MGG + S+ GSTF FT+ DP
Sbjct: 747 QVDSSTTRKYGGTGLGLAICKQLCEMMGGTMWVESQEDIGSTFYFTLVV------PADPS 800
Query: 915 WQQYVPDVS--EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCS 972
QQ V E G R L++DD ++ Q M + A S A +L
Sbjct: 801 TQQNTNQVCRLELDGQRLLIVDDNDTNRKILMRQAQVWGMECYAAQSGVQALDWLHQGER 860
Query: 973 TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
D + D ++ + L Q+ RK L + LP + L + + D
Sbjct: 861 -----------FDLAILDMQMPEMDGVTLAQKIRK--LPGCQTLPLVMLSSLGELQVDTP 907
Query: 1033 ELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK---QIL 1085
++K LTKP++ S VL+ P K KKP + + + +IL
Sbjct: 908 DVKQT-FAGFLTKPIKQSQLCDVLMQAMAGIPIKVKI--HSAKKPDIDAKMGERLPLRIL 964
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
+ +DN VN++VA L++ G G ++ L +D FMD+QMPEMDG +A+
Sbjct: 965 LAEDNPVNQQVALHLLQRMGYRADVAGNGLEVLEALQ-RQPYDVVFMDVQMPEMDGLEAS 1023
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
+I + ++ G I+AMTA+ + E C++ GMDDY+SK
Sbjct: 1024 RRI-------------CQEWCDLDGKTQSQRPRIIAMTANAMVGDREMCIEAGMDDYISK 1070
Query: 1206 PFEDEQLYTAVAR 1218
P E+L A+ +
Sbjct: 1071 PIRIEELVEALKK 1083
>gi|262197212|ref|YP_003268421.1| integral membrane sensor hybrid histidine kinase [Haliangium
ochraceum DSM 14365]
gi|262080559|gb|ACY16528.1| integral membrane sensor hybrid histidine kinase [Haliangium
ochraceum DSM 14365]
Length = 835
Score = 280 bits (717), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 211/676 (31%), Positives = 315/676 (46%), Gaps = 144/676 (21%)
Query: 594 AINRIAQVENDYHEMMELKAR-AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
+ N +A + +E +AR A A AKS+FLAT+SHEIRTP++GV+GM ++L+ L
Sbjct: 247 SFNAMAAAVAESRRALEDEAREARATAQAKSEFLATMSHEIRTPLSGVIGMSELLLGGRL 306
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
Q ++A+T + S + L+SLIND+LD +K ESG LE E VPF L + ++V+ + S+A
Sbjct: 307 SGEQREFAETLNTSAEALLSLINDILDFSKFESGHLELEEVPFDLQALTEDVVQILGSRA 366
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+K I+L + +P +GDPGR RQI+ NLVGN++KFT+ +GH+ ++
Sbjct: 367 RKKRIDLIARYDNNLPRFFVGDPGRIRQILLNLVGNAVKFTE-RGHVLLA---------- 415
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
V H D D+ +I+L
Sbjct: 416 --------------VHHNGDS-----------------------DD--------KIRLHF 430
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
VEDTG+GIP + IF F+Q S +R +GGTG+GL+ISR LVE M G+I S G
Sbjct: 431 EVEDTGIGIPENSLPHIFDRFIQVTSGEARRFGGTGLGLAISRQLVERMSGQISVSSVLG 490
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM 952
GSTF F + +DP+ V ++ G ++DD I V +Q
Sbjct: 491 KGSTFRFLLPL------QVDPEPSTEVLPSADLAGAHIAIVDDSEINRRVLVELMQSWNS 544
Query: 953 AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD---KEIGLVLHYMLKQQRRKGG 1009
V Q A L S +A+ ID D+ D E+G ++ RR
Sbjct: 545 RVSPYEDAQSALVALRAAQSRGTPYDIAV--IDSDLPDLSGAELG-------RELRRDPA 595
Query: 1010 LEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR-------LSVLIGCFQE---- 1058
L+ R + LL ++ + D + G LTKP + LS ++G +E
Sbjct: 596 LQDLR----MVLLTSTPRQGDGRRYQELGFSGYLTKPTKRGVLLETLSTVLGSKREGVPV 651
Query: 1059 ---------DPESSKKLQ-------------------------QKRKKPSLGHLLKGKQI 1084
+ ++ +++ R + + ++
Sbjct: 652 PLVTRHRLAESQAIRRISTPMDVAIPEWAPVGVTDGVPEPVAPDPRADMLSTAVRRSSRV 711
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+VDD VNRR+A L+K G +V GR AVDK + ++D FMD QMPEMDGF+A
Sbjct: 712 LLVDDTPVNRRLAGKMLEKLGLVVDIAVNGREAVDK-SAELSYDLIFMDCQMPEMDGFEA 770
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T +IR E G H PI+AMTA + ++C+ GMDDY+S
Sbjct: 771 TTRIRSRE-------------------AGSAHTPIIAMTASAMPEDRKRCIDVGMDDYIS 811
Query: 1205 KPFEDEQLYTAVARFF 1220
KP + L + V+R+
Sbjct: 812 KPVRQDTLRSTVSRWL 827
>gi|388255746|ref|ZP_10132927.1| MmoS [Cellvibrio sp. BR]
gi|387939446|gb|EIK45996.1| MmoS [Cellvibrio sp. BR]
Length = 794
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 204/618 (33%), Positives = 302/618 (48%), Gaps = 109/618 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A AKSQFLAT+SHEIRTPMNGV+GML+ML DT LD Q Y H SG+ L+
Sbjct: 261 KNAAEDASRAKSQFLATMSHEIRTPMNGVIGMLEMLRDTPLDDNQKHYIDVIHRSGETLL 320
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +KIE+G++E E F L ++++N + LF + AN++ IEL + VP +
Sbjct: 321 TIINDILDYSKIEAGKMELEETTFELDELVENCVQLFGATANKRQIELFGGLLPGVPRWL 380
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GDP R RQII NL+GN+ KFT + F+S+ ++ VL++
Sbjct: 381 RGDPTRLRQIIINLLGNAFKFTSEG---FISLQVS------------VLQQ--------- 416
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
LDN R++L V+D+G+GI + + +F
Sbjct: 417 ------------------------LDN-------DRVELHFAVQDSGIGIDMSSAGNLFD 445
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+ST+R YGGTG+GL+I + L ELMGG+IG SE G GSTF FTV + L
Sbjct: 446 SFNQADASTTRKYGGTGLGLAICKSLAELMGGKIGVESEKGRGSTFWFTVRLAQESVCDL 505
Query: 912 DPKWQQYVPDVSE--FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
P+ SE R + L+++ + AE + + V A S + A + L
Sbjct: 506 ----TSAPPEKSEHLLRNKKLLLVEGGVMLAEFIARCCKDWGVNVEAARSAKTALAQLKH 561
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK-----IFLLAT 1024
+ V +D + D GL +L R++P+ +F+ +
Sbjct: 562 AMHSG--EPFDFVGVDYSLPDAS-GLEFAQLL------------RDVPEFSELPLFMFSP 606
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVL------IGCFQEDPESSKKLQQKRKKPSLGHL 1078
D+ +L+ + +++ KP+ + +L + + PE + +++ HL
Sbjct: 607 GDVYHDQLQLRRLAVHSVVRKPISMKLLQRELIALSGHEAAPELPSERNKQQDLAKFSHL 666
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN-FDACFMDLQMP 1137
++LV +DN VNR V +G L K + + G A D N F+ MD +MP
Sbjct: 667 ----RVLVAEDNPVNRMVIKGLLGKLSIVPVFAENGVEACDAAQQQKNRFNLVLMDCEMP 722
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EMDGF+AT IR E GL +PI+A+TA +Q E C
Sbjct: 723 EMDGFEATRSIRDYERR-----------------EGLTPIPIIALTAHALQEHREAVFAC 765
Query: 1198 GMDDYVSKPFEDEQLYTA 1215
GM+ Y+SKP + LY A
Sbjct: 766 GMNYYLSKPITLDTLYAA 783
>gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium
autotrophicum HRM2]
gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium
autotrophicum HRM2]
Length = 967
Score = 280 bits (715), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 204/618 (33%), Positives = 304/618 (49%), Gaps = 113/618 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A AKSQFLA +SHEIRTPMNGVLGM ++LM+T+L Q +++T +SG L+
Sbjct: 295 KETAEEASRAKSQFLANMSHEIRTPMNGVLGMAELLMETDLTEEQRRFSKTIQSSGSSLL 354
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +KIE+G+LE E + F+L ++D+V+ + +S+A+ K +ELA+ + PE
Sbjct: 355 AIINDILDFSKIEAGKLELETINFNLQILIDDVMQMLASRAHAKQLELAVLIP---PETC 411
Query: 732 I---GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788
I GDP RFRQ++TNLVGN+IKFT+ +G + V V A V + VK VL
Sbjct: 412 IFLRGDPTRFRQVLTNLVGNAIKFTK-QGEVVVQV--ATTVSDQNRVKLHVL-------- 460
Query: 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
+ +T G D + + F D
Sbjct: 461 -----IRDTGIGISQQDLQRLFSPFSQAD------------------------------- 484
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
ST+R YGGTG+GL+IS+ +V LMGG++ SEPG GSTFSFTV F
Sbjct: 485 ---------GSTTRKYGGTGLGLAISKEIVALMGGDLHCESEPGKGSTFSFTVDFAA--- 532
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
SL+ + + + + +G R LVIDD E+ + M S
Sbjct: 533 -SLETEKNRSRLNTANLKGHRVLVIDDNLTNREILKRQTSSWGMKPK------------S 579
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP--------KIF 1020
C + +L L + +D LVL + K GLE+++ + ++
Sbjct: 580 SDCGAKGIEELHLAQQKGEPFD----LVL--LDKDMPGMDGLEVAQQIKADSAIADTRLI 633
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPSLG 1076
+L + + D + K +GI L KP+ + L I + P++
Sbjct: 634 MLTSVGAGNDAAQAKRNGISAYLNKPVPQADLHAAVIQIIGDHPKNRSDHMIDSTGIDQD 693
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
L +LV +DN+ N+ VA L+ G V V GR AVD ++ ++D FMD QM
Sbjct: 694 KQLFNIHVLVAEDNLTNQNVAAAMLRLFGCRVDIVSNGREAVDAIS-KKSYDLVFMDCQM 752
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P +DG+QAT IR E E N ++PI+A+TA+ ++ ++C+
Sbjct: 753 PVLDGYQATAAIRQFEKE----------------NGVEKNMPIIALTANALEGDRKKCLT 796
Query: 1197 CGMDDYVSKPFEDEQLYT 1214
GMDDY+SKPF Q+ +
Sbjct: 797 AGMDDYLSKPFLKSQILS 814
>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
Length = 2059
Score = 280 bits (715), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 202/609 (33%), Positives = 302/609 (49%), Gaps = 97/609 (15%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AEAA AKS F+A +SHEIRTPMNG++GM + +DTEL A Q +Y +S L+
Sbjct: 1346 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLTMVQSSAGSLL 1405
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +KIE+GRLE + F L L + L + +A+QKG+EL ++ +P+ +
Sbjct: 1406 TIINDILDFSKIEAGRLELDQSDFSLRAHLYDTLKTLAWRAHQKGLELVCDIASDIPDSL 1465
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDPGR RQI+TNLVGN+IKFT + G + D+ K+D
Sbjct: 1466 VGDPGRLRQIVTNLVGNAIKFTSE-GEV--------DLVVKID----------------- 1499
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
K +D G + L +V D+G+GIP E IF
Sbjct: 1500 ----------------------KYID--------GEVLLRFSVIDSGIGIPKEKLHLIFE 1529
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD S +R YGGTG+GL+IS LVELM G++ VS+PG GSTF FT F + L
Sbjct: 1530 AFSQADGSITRRYGGTGLGLTISTRLVELMKGKLRVVSKPGKGSTFEFTAQFP--TKPDL 1587
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
D P + + + LV+DD +V L + ++ Q A ++
Sbjct: 1588 DLG---ETPIGVKLKDVHTLVVDDNKNTVKVLCQMLFEFGITSDSTDNGQDAYKMMTKAA 1644
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
++ + + D +I + ++ + + +S+ + +L +
Sbjct: 1645 QSNRPYEFLFI-------DAQIDTNIVDLISEDPK-----LSK--TNVIMLICGGGQRGC 1690
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNM 1091
E S I L+KP+ S ++ Q+ S + K+ +P + + IL+ +DN+
Sbjct: 1691 PENASSLIGGYLSKPVSPSEMLEILQKQGISRQSKVCKKIQP-ISEIF--GDILLAEDNV 1747
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
VN+R+A L+K G VT + G AV H FD MD+QMP M GF+AT QIR L
Sbjct: 1748 VNQRLAVRLLEKFGHKVTLAENGLQAVAACEIKH-FDLILMDVQMPHMGGFEATAQIRKL 1806
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
E+ NE I H PI+AMTA + +C++ GMDDY+SKP +Q
Sbjct: 1807 ES--NEGI----------------HTPIIAMTAHALARDRVKCIEAGMDDYISKPINPDQ 1848
Query: 1212 LYTAVARFF 1220
L + + ++
Sbjct: 1849 LKSMIEKYL 1857
>gi|333983791|ref|YP_004513001.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Methylomonas methanica MC09]
gi|333807832|gb|AEG00502.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Methylomonas methanica MC09]
Length = 1677
Score = 280 bits (715), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 205/616 (33%), Positives = 304/616 (49%), Gaps = 107/616 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A+A AKS+FLAT+SHEIRTPMNGV+GM ++L++T L Q A TA+ S K L+S+I
Sbjct: 307 AQAGSKAKSEFLATMSHEIRTPMNGVMGMTELLLNTNLSERQHRLADTAYRSAKSLLSII 366
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
N++LD +KIE+G+L+ F + +L++ L + +A++KG+EL + + V IGD
Sbjct: 367 NNILDFSKIEAGKLQLLAGEFDVRQLLEDTTHLLADQAHRKGVELILSIPVDFDCVAIGD 426
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQ++ NL+GN+IKFT+ + +V +K L SLN +
Sbjct: 427 SERLRQVLVNLLGNAIKFTE---------------QGEVQLK---LTPSLNPSNPE---- 464
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
+I+LL V DTG GI E Q IF F
Sbjct: 465 --------------------------------KIELLFNVIDTGPGIDEEFQQYIFDSFT 492
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
Q D S +R YGGTG+GL+ISR LVELM ++ S PG GS F F +T G + +
Sbjct: 493 QQDGSITRRYGGTGLGLTISRQLVELMDSDLMLHSTPGHGSRFYFKLTLPLGSQTEI--- 549
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
DV+ G+R LV+DD + E+ LQ+ V A+S A L D
Sbjct: 550 ---IKADVAALNGIRILVVDDNATNREILTEQLQQWGAEVTCADSGPRALKLLKDVGRQP 606
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
++A++ D GL L ++ + GL + + ++ T+ +
Sbjct: 607 FKFRIAILDWHMPYMD---GLSLAKAIQADPQINGLSLILLSSESVVIDTT-------QP 656
Query: 1035 KSDGIVTLLTKPLRLSVLIGCFQE----------DPESSKKLQQKRKKPSLGHLLKGKQI 1084
GI L KP+ L+ C +E P+ +KK + G L+G+ I
Sbjct: 657 NQYGISYYLNKPVFQKQLLTCLREVLARAPVNVSPPQGTKK--------TTGKGLRGR-I 707
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+ +DN+VN+ VA+G L++ G V + G+ AVD L FD MD MP +DGF A
Sbjct: 708 LLAEDNLVNQEVAKGFLEQIGCRVYLANNGQEAVD-LALERTFDIILMDCHMPVLDGFSA 766
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T IR E + SG++ PI+A+TADV + EQC++CGM+DY+S
Sbjct: 767 TISIRQHEQQ------SGKAL-----------TPIIALTADVQKGVEEQCLQCGMNDYLS 809
Query: 1205 KPFEDEQLYTAVARFF 1220
KPF Q+ + ++
Sbjct: 810 KPFSFAQIEQTLKKWL 825
>gi|34496337|ref|NP_900552.1| sensor/response regulator hybrid protein [Chromobacterium violaceum
ATCC 12472]
gi|34330295|gb|AAQ58556.2| probable sensor/response regulator hybrid protein [Chromobacterium
violaceum ATCC 12472]
Length = 902
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 209/664 (31%), Positives = 309/664 (46%), Gaps = 123/664 (18%)
Query: 572 TAINASIGVVVITL---LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLAT 628
+A G+ V+ + G +F I+ E + ME AE+A AKS FLA
Sbjct: 118 SATQVEAGLTVVDMSGERTGTLFIRDISNRKLQEGKLKQAME---EAESATRAKSDFLAN 174
Query: 629 VSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRL 688
+SHEIRTPMN ++G+ + + T LD Q DY Q HNSGK L+ +IND+LD +KIE+G+L
Sbjct: 175 MSHEIRTPMNAIIGLAHLALRTGLDPKQRDYLQKIHNSGKHLLGIINDILDFSKIEAGKL 234
Query: 689 EPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGN 748
+ E F L VLDN+ +L KA KG+EL + + +IGDP R QI+ N N
Sbjct: 235 DLENAEFDLERVLDNLAALLGEKAEAKGLELIFDIGPGLDRSLIGDPLRLGQILINYANN 294
Query: 749 SIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWK 808
++KFT+ R +V V+ + E+ +S
Sbjct: 295 AVKFTE---------------RGEVTVRARCREERGDS---------------------- 317
Query: 809 SWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTG 868
+ L V DTG+G+ E + ++F F QAD+STSR YGGTG
Sbjct: 318 -------------------LLLHFEVSDTGIGLSAEQKAKLFQSFQQADTSTSRKYGGTG 358
Query: 869 IGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGL 928
+GL+ISR L E+MGGE+G SEPG GSTF FT +GE + + +P V R
Sbjct: 359 LGLAISRKLAEMMGGEVGVDSEPGKGSTFWFTARLGKGEPHP------ERLPGVG-MRNR 411
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
RALV+DD E+ L+ + V A + A + + +V +D
Sbjct: 412 RALVVDDSRAAREILAEQLRGMTFRVDEAEDGEQALERVEQAERDG--DRYEVVFLD--- 466
Query: 989 WDKEIGLVLHYMLKQQRRKGGLEISRNLPK-------IFLLATSISETDRDELKSD-GIV 1040
W + R G+E +R L + ++ T + L D GI
Sbjct: 467 W-------------RMPRMDGIEAARRLMRHDAALRPHRVMVTGYGREEVFRLAEDAGIE 513
Query: 1041 TLLTKPLRLSVLIGC----FQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRV 1096
L KP+ SVL F + + + + L L+G ++L+ +DN +N++V
Sbjct: 514 MTLIKPVSASVLFDSTMRLFGGEAAAGARAAPAADEIDLSP-LRGMRVLLAEDNELNQQV 572
Query: 1097 AEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEIN 1156
A L VT G A+ L FD MD+QMP MDG +AT ++R L +
Sbjct: 573 ATELLSAADIEVTVASNGEEAL-SLAEAQPFDLALMDMQMPVMDGLEATRRLRRLAS--- 628
Query: 1157 EQIASGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTA 1215
W PILAMTA+ + E+C++ GM+D+V+KP + ++L+ A
Sbjct: 629 ------------------WGKRPILAMTANAMSGDRERCLEAGMNDHVTKPIDPDKLFAA 670
Query: 1216 VARF 1219
+ R+
Sbjct: 671 LKRW 674
>gi|119898773|ref|YP_933986.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
gi|119671186|emb|CAL95099.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
Length = 1682
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 205/624 (32%), Positives = 299/624 (47%), Gaps = 116/624 (18%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A AK+ FLA +SHEIRTPMN V+GM ++++T+L Q DY + S + L+ +I
Sbjct: 929 AEDAARAKANFLANMSHEIRTPMNAVIGMTHLVLNTDLTRQQRDYLKKIQGSSQHLLGII 988
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+G++ E + F L VL+NV L S KA KG+EL I V VP ++GD
Sbjct: 989 NDILDLSKIEAGKMAVEHIEFDLDTVLENVTGLISEKATGKGLELIIDVGKTVPRSLVGD 1048
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P R Q++ N N++KFT+ +G I + LA+ +D VL
Sbjct: 1049 PLRLGQVLINYANNAVKFTE-RGSIVIRCDLAETAE-----RDVVLR------------- 1089
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
F V D TG+GI E R+F F
Sbjct: 1090 ------FSVTD-------------------------------TGIGIEAEQIPRLFQTFE 1112
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD+ST+R YGGTG+GL+ISR L +MGGE G SE G GSTF FT G +
Sbjct: 1113 QADNSTTRKYGGTGLGLAISRELAHMMGGEAGVDSEYGKGSTFWFTARLARGSGSD---- 1168
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
+ VPD ++ RG + LV+DD + EV L+ + AV A+S A + + +
Sbjct: 1169 -RSLVPD-ADLRGRKVLVVDDNDLAREVIGDLLRSMSFAVSTASSGLEALDEIQ-RANAA 1225
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS-----ISET 1029
+P +V +D W Q G+E +R + + L A+S ++
Sbjct: 1226 GMP-YEVVFLD---W-------------QMPGIDGVETARRIKRA-LAASSPRLLMVTAY 1267
Query: 1030 DRDELKSD----GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG----HLLKG 1081
RDE+ GI LL KP+ S+L ++ + +L + G
Sbjct: 1268 GRDEVMKSAADAGIHDLLIKPVTASLLFDTLMRALGRARGDDAQVPGDALRGADLDAIAG 1327
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP--PHNFDACFMDLQMPEM 1139
+IL+V+DN +N+ VA G L G +V + G A+D L P +D MD+QMP M
Sbjct: 1328 ARILLVEDNDLNQEVAVGLLAGAGFVVEVAENGAVALDLLQAGGPGCYDLVLMDMQMPVM 1387
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT +IR L G +PI+AMTA+ + + E+C+ GM
Sbjct: 1388 DGVTATGEIRRLP--------------------GFDTLPIVAMTANAMASDREKCLAAGM 1427
Query: 1200 DDYVSKPFEDEQLYTAVARFFMSG 1223
DD+++KP + L+ A+ + G
Sbjct: 1428 DDHLAKPIDPPALWAALRHWITPG 1451
>gi|192359994|ref|YP_001980883.1| MmoS protein [Cellvibrio japonicus Ueda107]
gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107]
Length = 803
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 208/612 (33%), Positives = 293/612 (47%), Gaps = 100/612 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A AKSQFLAT+SHEIRTPMNGV+GML ML DT LD Q Y H SG+ L+
Sbjct: 268 KNAAEDASRAKSQFLATMSHEIRTPMNGVIGMLDMLRDTPLDENQKHYIDVIHRSGETLL 327
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+IND+LD +KIE+G+++ E + F L D+++N + LF + AN++ IEL ++ VP +
Sbjct: 328 SIINDILDYSKIEAGKMQLEEMVFELDDLVENCIQLFGATANKRNIELFGGLNPDVPRRL 387
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GDP R RQII NL+GN+ KFT++ FVS+ +
Sbjct: 388 RGDPTRLRQIIINLLGNAFKFTEEG---FVSLEVG------------------------- 419
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
LDNT ++ GR+ L V+D+G+GI + +F
Sbjct: 420 ------------------------LDNT-ALQAEGRLMLRFVVQDSGIGIDPNSASNLFD 454
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+ST+R YGGTG+GL+I + L ELMGG IG S G G+ F FT F E S
Sbjct: 455 SFNQADASTTRKYGGTGLGLAICKSLAELMGGRIGVKSAKGEGAQFWFTAQFDVQELAS- 513
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
PD + +G R L+++ + T+ + + + A S + A + L
Sbjct: 514 ----PSLTPDPT-LKGKRLLMVETSAPLVTFTQRYCDHWGLLLETAFSAKQAVALLKHGL 568
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
V D + D + L Q R LP +F+ + D+
Sbjct: 569 HAG--EPFDFVAFDYSLPDAT-----GFELAQWLRDA--PDFTELP-VFMFSGGDVYHDQ 618
Query: 1032 DELKSDGIVTLLTKPL-------RLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQI 1084
++ I T+L KP+ L L+G E + ++ + HL Q+
Sbjct: 619 AVMQRLAIHTVLRKPISVKALYRELIALLG--HEAAPTVLPAEKVLARDKFAHL----QV 672
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL-TPPHNFDACFMDLQMPEMDGFQ 1143
LV +DN VNR V +G L K G + GR AVD + FD MD +MPEMDGF+
Sbjct: 673 LVAEDNPVNRMVIKGLLGKLGIQPVFAENGREAVDLVHHGAQRFDLILMDCEMPEMDGFE 732
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT IR LE SG + VP++A+TA +Q E GM+ Y+
Sbjct: 733 ATRNIRELERR------SGRPA-----------VPVVALTAHALQEHREAVFASGMNYYL 775
Query: 1204 SKPFEDEQLYTA 1215
+KP + LY A
Sbjct: 776 AKPITFDSLYAA 787
>gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
Length = 1792
Score = 279 bits (714), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 197/640 (30%), Positives = 308/640 (48%), Gaps = 141/640 (22%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K +A+AA AK FLA +SHEIRTPMN ++GM Q+ + TELD Q +Y + + + L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+IND+LD +KIE+G+L+ + VPF L +L+++ +FS KA K IEL V+ VP +
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GD R Q++ NL+ N+IKFT+ +G + +S+ L V+ +
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTE-RGEVLLSLSL---------------------VEQQD 1190
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
D V L +V D+G+G+ + Q ++F
Sbjct: 1191 DDVV----------------------------------LRFSVRDSGIGLTEQQQAKLFK 1216
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--TEGERN 909
F QAD+ST+R YGGTG+GL+I + LVELMGG+IG S+ G GSTF FTV ++G++
Sbjct: 1217 SFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQLGHGSTFYFTVKLHISDGQKL 1276
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
L+ E G+ LV+DD + ++ R L+ + V S + A S
Sbjct: 1277 VLE----------QELEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAIS---- 1322
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR--------------- 1014
C +L + LID W + GLE +R
Sbjct: 1323 RC---LLQAYEVALID---W-------------KMPNMDGLETARQIQLQAQSQSQSQSQ 1363
Query: 1015 ----------NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSK 1064
PKI +++ +++ + ++KP+ S L+
Sbjct: 1364 PQSHPQPQPQPQPKILMVSAHADHEFLTQIEQLALAGYISKPISASRLLDGIMNAIGREG 1423
Query: 1065 KLQQKRK----KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
L +R+ P L L+GK+IL+V+DN +N VA L++ G I++ G+ A+DK
Sbjct: 1424 ILPVRRRTEELAPQLLVPLQGKRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDK 1483
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
L+ H FD MD QMP MDG+QAT IR L ++P++
Sbjct: 1484 LSQQH-FDLVLMDCQMPVMDGYQATQAIRKRPE--------------------LANLPVV 1522
Query: 1181 AMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
AMTA+ + + C++ GM+D+++KP E LY + ++
Sbjct: 1523 AMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYL 1562
>gi|145300783|ref|YP_001143624.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418361336|ref|ZP_12961991.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853555|gb|ABO91876.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356687366|gb|EHI51948.1| two-component system hybrid sensor histidine kinase/response
regulator protein [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 890
Score = 279 bits (714), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 205/627 (32%), Positives = 306/627 (48%), Gaps = 102/627 (16%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
A ++ E+ + AE+A AKS FLA +SHEIRTPMN +LGM + + T LD Q
Sbjct: 136 FAVMQTKNQELEQAYELAESATRAKSDFLANMSHEIRTPMNAILGMAHLALQTRLDPQQA 195
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY S + L+ +IND+LD +KIE+G+L+ E + F L VL+N+ +L KA KGI
Sbjct: 196 DYVGKIQRSAQHLLGIINDILDFSKIEAGKLDLEQIEFDLDHVLENLATLVGEKAEAKGI 255
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL V ++ ++ GDP R G I ++
Sbjct: 256 ELLFEVDHQLDTLLYGDPLRL------------------GQILINY-------------- 283
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL-VTVED 836
+ N+V K E ++L +E+L + LL +V+D
Sbjct: 284 -----ANNAV--------------------KFTEQGEILVKVTCLEKLPKEVLLHCSVQD 318
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+G+ E Q R+F F QADSST+R YGGTG+GL+ISR L LMGGE+G SEPG GST
Sbjct: 319 TGIGMSQEQQQRLFQSFQQADSSTTRKYGGTGLGLAISRELAALMGGEVGVQSEPGKGST 378
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
F FT G S +Y+P + + RG R LV DD + + L+ + V
Sbjct: 379 FWFTARLGRGRYRS------RYLPSL-DLRGRRMLVADDSASARTILAALLRSMSFVVDT 431
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
A S Q A ++ +VL+D W GL ++ RR + + L
Sbjct: 432 AESGQQALQMIASAEQEG--NAYEVVLLD---WHMP-GL---DGIETGRRLIARGLGKRL 482
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKK 1072
++ + E R E +S G +L KP+ SVL IG F + + K +
Sbjct: 483 YRVMVTGYGREEVFR-EAQSAGFDRVLVKPVCASVLFDTIIGLFG---HQTTAITLKPPQ 538
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
P+ + G +IL+ +DN +N++VA L+ GA V+ G A+ ++ +D M
Sbjct: 539 PTHSYRFDGLRILLAEDNELNQQVAMELLRAVGADVSIAGNGAIAL-QMAAQQPYDLILM 597
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP MDG AT Q+R E++ ++ +PILAMTA+V+ E
Sbjct: 598 DMQMPVMDGLAATRQLRQQESDGHQ-------------------IPILAMTANVMAGDRE 638
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+C+ GMDD+++KP + ++LY A+ R+
Sbjct: 639 RCLAAGMDDHIAKPIDPDKLYAALQRW 665
>gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
ES-1]
gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
ES-1]
Length = 908
Score = 279 bits (713), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 188/623 (30%), Positives = 311/623 (49%), Gaps = 109/623 (17%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
E ++ AEAA K +FLA +SHE+RTPMN V+G+ + + TEL Q DY Q H+S K
Sbjct: 243 EARSHAEAASHIKDEFLANMSHELRTPMNAVIGLSHLCLQTELSDKQQDYLQKIHSSAKS 302
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+ ++ND+LD +KIE+G++E + + F L +VL N+ ++ +K+++K +EL + + VP
Sbjct: 303 LLGILNDILDVSKIEAGKMELDRIAFELDEVLGNLSTILWAKSHEKNLELLLETAPDVPS 362
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
V++GDP R Q++ NL GN++KFT KG + VS+ LEK
Sbjct: 363 VLVGDPLRLGQVLINLAGNAVKFTA-KGEVVVSID---------------LEK------- 399
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
E+ ++ L V+DTG+G+ ++
Sbjct: 400 ---------------------------------EEGDQVVLRFAVKDTGIGMSQSEIDKL 426
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
F PF QAD+S +R +GGTG+GL+IS+ L+E+MGG+I S PG+GS F FT F
Sbjct: 427 FRPFTQADTSITRKFGGTGLGLTISKRLIEMMGGKIWVESTPGSGSKFIFTANF------ 480
Query: 910 SLDPKWQQYVP--DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
L K ++ P + + F G+R L +DD + + +L+ V VA++ + A S +
Sbjct: 481 -LKAKGRENAPRTEFAGFDGMRVLAVDDSENSLSILKNYLESFSFDVSVASNGRSALSTV 539
Query: 968 SDTCSTSVLPQLALVLID---KDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
+L ++D ++ E+ LH M + + N PKI L+A
Sbjct: 540 RKANKDG--KPFSLAILDWKMPEMDGLELARELHAMTEAE----------NKPKILLIA- 586
Query: 1025 SISETDRDELKSDGIVT-LLTKPLRLSVLIGCFQE--DPESSK----KLQQKRKKPSLGH 1077
+ L+++ +V +L KP + L P+ S ++ + P L
Sbjct: 587 GYGQNGTPALRNNKVVDGVLEKPFNQNKLFDAISRISGPDQSATGKFRITGAQFNPLLVS 646
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
++G +L+V+DN +N++VA+ L+ G V + G A+ +L FD MD+QMP
Sbjct: 647 QVRGAHLLLVEDNEINQQVAQELLEGFGIKVAVAENGEEAIARLN-EEQFDGVLMDMQMP 705
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG AT +IR N + A+ +PI+A+TA+V + +
Sbjct: 706 VMDGISATREIRK-----NPKFAT---------------LPIIALTANVYVSEQNAFLAA 745
Query: 1198 GMDDYVSKPFEDEQLYTAVARFF 1220
GM+D++ KP + ++L +A++
Sbjct: 746 GMNDHIGKPLDPDRLVATLAKWL 768
>gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 1076
Score = 279 bits (713), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 197/628 (31%), Positives = 306/628 (48%), Gaps = 89/628 (14%)
Query: 599 AQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLD 658
A++ N E+ K RA+AA KS+FLA +SHE+RTPMN V+GM +L T LDA Q D
Sbjct: 528 AKLRNVNAELQTAKDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSLDAQQQD 587
Query: 659 YAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIE 718
+ T +SG L+ LIND+LD +KIE+G+LE E PF+L ++ L L + +A +KG+E
Sbjct: 588 FVDTIRSSGDALLCLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLE 647
Query: 719 LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778
+A +P ++GD R RQ++ NL+ N +KFT D G + V V +++D+
Sbjct: 648 IAYLADPDLPCGIVGDVTRLRQVLVNLLTNGVKFT-DNGEVIVYVK-----EVTAEIQDR 701
Query: 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTG 838
+ + + Q R V+DTG
Sbjct: 702 --------------------------------------EGSGSEGQSPRRLFQFAVKDTG 723
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
+GIP + R+F F Q DSST+R YGGTG+GL+IS+ L ELMGG+I SE G GSTF+
Sbjct: 724 IGIPEDRLNRLFQSFSQVDSSTTRKYGGTGLGLAISKRLCELMGGKIWVDSEIGIGSTFT 783
Query: 899 FTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
FT+ + P + D++ +G R L++DD ++ M A
Sbjct: 784 FTIAAPIADTFDCAP-----IHDLAPLKGQRLLIVDDNLTNRKILTKFANIWGMYSQAAP 838
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
S A L S L ++D + + + GL L RR GL+ ++LP
Sbjct: 839 SGPAALELLRGRSS------FDLAVVDMQMPEMD-GLTLA------RRIHGLQKYKDLPL 885
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ L + + E + +L KP++ ++L+ E+++ + +PS
Sbjct: 886 VMLSSLGV-EAISTPMDKSLFYAILNKPIQEAQLSAILVRAVTRQSENTQNSEFDCPQPS 944
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
K +L+ +D +VN++VA LK+ G + G+ ++ L +D MDL
Sbjct: 945 TNS--KTLHLLLAEDVVVNQKVALLILKQLGYEADVANNGKEVLEALH-RQPYDVVLMDL 1001
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMPEMDG A+ I+ + A + I+A+TA+ +Q E+C
Sbjct: 1002 QMPEMDGLTASRAIQE----------TWSPEARPY---------IIALTANAMQGDREKC 1042
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
++ GM DYVSKP E+L A+ R+ +S
Sbjct: 1043 LEAGMQDYVSKPIRSEELKAALERYLLS 1070
>gi|406836202|ref|ZP_11095796.1| sensor protein [Schlesneria paludicola DSM 18645]
Length = 1992
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 204/611 (33%), Positives = 295/611 (48%), Gaps = 101/611 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
++ E K AE A AKSQFLAT+SHEIRTPMNG++GM + + T A Q Y + S
Sbjct: 1461 KLREAKEAAENASQAKSQFLATMSHEIRTPMNGIIGMTDLTLMTRPTAQQTSYLRVVKQS 1520
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ L+ND+LD +KIE+GRLE E +PF L + + + + + S K+ Q G+EL ++
Sbjct: 1521 ADSLMRLLNDILDFSKIEAGRLELESIPFDLRETVSDAVRILSVKSAQTGLELNYQIAPD 1580
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP +V GD GR RQI+ NLVGN+IKFT + G +FV V
Sbjct: 1581 VPLLVGGDAGRLRQILVNLVGNAIKFTAE-GEVFVDV----------------------- 1616
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
W + D+ + L + DTG+GI E +
Sbjct: 1617 -----------------------WTEERRFDD---------VTLHFAIRDTGIGISEEQK 1644
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
RIF F QAD+S +R +GGTG+GLSIS LVELMGG+I SE G GSTF FT T
Sbjct: 1645 DRIFASFSQADNSITRRFGGTGLGLSISSELVELMGGKIWVESELGHGSTFHFTARLTLP 1704
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM---AVHVANSMQLA 963
+ K + P V L++DD V L+++ + AVH A + L
Sbjct: 1705 VEAAASEKSRIVFPPVP------VLIVDDHPTSRSVLTDTLEQMGLQPQAVHNAETAYLM 1758
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
Y + + + L + ++ +D W + +Q RR L P + L+
Sbjct: 1759 MRYAVMSQTPTQLVLIDAMMPGQDGW---------ALAEQIRRDPDLS---GCPILMLVP 1806
Query: 1024 TS--ISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKG 1081
S +E + L+S+ TKP ++S L QE S ++ ++ +
Sbjct: 1807 ASHVYTEQQNEALRSN--TWYFTKPAKVSELADAIQEALSVSSGNDGSLREEAV-TTQQP 1863
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+IL+VDD VNR VA G L+ G V GR AV+ L FD MDL+MPEMDG
Sbjct: 1864 MRILLVDDAPVNREVATGLLEMFGHHVQTATNGREAVE-LLESQAFDVVLMDLEMPEMDG 1922
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
A +IR + E ++ +++ PI AMTA ++C++ GMD
Sbjct: 1923 MSAAIEIR--KREQSKSVST----------------PIFAMTAHATNDIRDRCLEAGMDG 1964
Query: 1202 YVSKPFEDEQL 1212
Y++KP + ++L
Sbjct: 1965 YLTKPIQPDEL 1975
>gi|452966229|gb|EME71242.1| sensor protein gacS [Magnetospirillum sp. SO-1]
Length = 965
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 201/632 (31%), Positives = 312/632 (49%), Gaps = 131/632 (20%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
+ + K AEA + KS+FLAT+SHEIRTPMNGV+GM +L+DT L Q +A+T +SG
Sbjct: 314 LRDAKEAAEAGNRIKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDSG 373
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+++IND+LD +K+E+G+L+ ++ F L ++++V+ + + +A+ KGIE+A + R+
Sbjct: 374 ESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRL 433
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
+V DPGR RQ++ NL GN++KFT+ + V ++ +LE +
Sbjct: 434 RMLVRSDPGRLRQVLMNLGGNAVKFTE---------------KGGVSIEATLLEPRGEAQ 478
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
+ D V D+G+GI EAQ
Sbjct: 479 MARFD-----------------------------------------VRDSGIGIAPEAQH 497
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R+F+ F Q D+ST+R YGGTG+GL+IS+ L ELMGGE+G S PG GS F T+
Sbjct: 498 RLFSMFSQVDASTARRYGGTGLGLAISKKLAELMGGEVGMESAPGQGSRFWITLPLDLLA 557
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
SL P PD R R LV+DD + ++ L+ + V AC+
Sbjct: 558 PQSLAP------PD---LRNRRVLVVDDNPVNRDIIERQLRAFGVRVQ-------ACAE- 600
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS-- 1025
+ + + +L + + W E+ ++ M G E+ R + I +L+ +
Sbjct: 601 ----AGAGMEELTRAAVSGEPW--EVAVIDSQMPMVT----GPEMVRMIRAIPMLSGTRI 650
Query: 1026 --------ISETDRDELKSDGIVTLLTKPLRLSVL-------IGCFQEDPESSKKLQQKR 1070
+E ++D+ DG L KPLR S L +G S+ Q++
Sbjct: 651 IVTSSQGLAAEPNQDKAAIDG---FLHKPLRQSTLLDTIGRVLGLSDRPAHSAGHEQEET 707
Query: 1071 KKP-SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD--KLTPPHNF 1127
P S G L+ ILV +DN VN++VA G L+K G V V G A++ +L P +
Sbjct: 708 GAPESAGRRLR---ILVAEDNPVNQQVALGLLRKLGHSVDVVGDGAEALEAVRLLP---Y 761
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD+QMP MDG +AT IR L +PI+AMTA+ +
Sbjct: 762 DLVLMDVQMPGMDGLEATRAIRALATPA-------------------ARIPIVAMTANAM 802
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ ++ C GM+ Y+SKP + +L A+A +
Sbjct: 803 RGDDQICFDSGMNGYISKPIDRRKLAEALAPY 834
>gi|85712454|ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
[Idiomarina baltica OS145]
gi|85693732|gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
[Idiomarina baltica OS145]
Length = 868
Score = 278 bits (712), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 195/631 (30%), Positives = 309/631 (48%), Gaps = 102/631 (16%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
I+ +++ +M + K AE A+VAK +FLA +SHEIRTP+N ++GM + + T+L Q
Sbjct: 184 ISSIKSVAEQMEQAKESAEQANVAKGEFLANMSHEIRTPINAIVGMANLCLKTQLSEKQK 243
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
Y + +S + L+ +IND+LD +KI++G+L E +PF L DVL ++ +F+ KA K +
Sbjct: 244 RYIKVIDSSSQALLGVINDILDFSKIDAGKLSIERIPFDLQDVLTSLADMFAYKAYDKDL 303
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
E I + +P + GDP R Q++ NLV N+IKFT+D G I V+V L D
Sbjct: 304 EFIINLPANIPTRLFGDPLRLNQVLVNLVSNAIKFTED-GEINVAVTLLD---------- 352
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+DKV+ L ++V DT
Sbjct: 353 -----------KNTDKVW----------------------------------LRISVTDT 367
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+G+ E + +F F QADSST+R YGGTG+GL+ISR L++LMGG+IG S G GSTF
Sbjct: 368 GIGMDEEQRANLFKAFTQADSSTTRKYGGTGLGLAISRRLIQLMGGDIGVTSGVGQGSTF 427
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
+T D QY+ + + RG R L IDD E+ + L+ ++ V V
Sbjct: 428 YIELTLPMQPEQ--DDSHHQYL--IQKLRGKRVLAIDDNLSTREMIQEMLRSYQVDVRVC 483
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ + A L + L ++L+D + + GL L + Q ++ P
Sbjct: 484 RTAEQALDILRED-----LEPYDVLLVDWRLPGMD-GLSLCQRVYQ-------SLASEAP 530
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL-----IGCFQEDPESSKKLQQKRKK 1072
K+ L +E ++ + GI +L+KP + L ++ D S K
Sbjct: 531 KMILATGYYAEEMSEQAAAAGISDILSKPFTATTLGHSLATTLYKRDDSISSK---DAPA 587
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
+L ++G IL+V+DN +N++VA LK G V + G+AA+D + + M
Sbjct: 588 TNLPDAIQGAPILLVEDNEINQQVALELLKSQGFKVDIAEHGQAALDAIEQKQ-YALVLM 646
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP MDG A +IR + +PILAMTA+ + E
Sbjct: 647 DIQMPVMDGLTAAKKIRSYYD--------------------YKQLPILAMTANAMSGDEE 686
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
+ + GM +++KP +++QL A+ ++ + G
Sbjct: 687 RSLSAGMQGHIAKPIDEKQLIKAIIKWCVPG 717
>gi|417947712|ref|ZP_12590863.1| putative two-component sensor [Vibrio splendidus ATCC 33789]
gi|342810750|gb|EGU45821.1| putative two-component sensor [Vibrio splendidus ATCC 33789]
Length = 796
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 205/663 (30%), Positives = 311/663 (46%), Gaps = 129/663 (19%)
Query: 591 FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
++ +I RI Q Y E+++ K AE A+ KS+FLA +SHEIRTPMNG++G+ +L +
Sbjct: 215 YNQSIERIRQ---QYQELIKAKETAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM 271
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
++ Q +Y + S L+ LIND+LD +KIE+GRLE + P + + +V S F
Sbjct: 272 DMPKEQKEYVNMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRV 331
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
KA QKG+ + + ++P +VIGD + RQ++ NLVGN+IKFT+ +GH+ +S+ L
Sbjct: 332 KAEQKGLRFQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTE-RGHVTLSLRL----- 385
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKL 830
+KV+E EQ R++
Sbjct: 386 ------EKVIEP----------------------------------------EQKLRVRF 399
Query: 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
V D+G+GI + Q +F F QAD ST+R YGGTG+GL+I +V LMG ++ S
Sbjct: 400 --EVADSGIGIAEDKQKSVFDKFQQADGSTTRIYGGTGLGLTICDKIVSLMGSKLELTSI 457
Query: 891 PGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRL 950
G GSTF F F DP + ++ +F + L++DD + +T LQ
Sbjct: 458 EGKGSTFYFVADF--------DPCLELDESNI-DFNKVSVLLVDDSQLNMRITSTQLQSF 508
Query: 951 EMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL 1010
++ + A +S++ + LVLIDK V G Q RK
Sbjct: 509 GVSSTCCETATEALELVSESVENA--SPYDLVLIDK-VMPSIDGF-------QLARKLIE 558
Query: 1011 EISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE------------ 1058
+ PK+ +++ + D K G + + +P + + L E
Sbjct: 559 RFGKACPKLVMISADPRKQDEMHAKQVGFIAYIARPYQDNQLKWTISEVLARTAETETFT 618
Query: 1059 ------------DPESSKK--------LQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAE 1098
DP S+ K ++ + KP +L ++LVV+D+ VN++VA+
Sbjct: 619 YPNRGEVAFKDNDPLSTTKPAVVAKEGVEAEESKPQPETVLFSGKVLVVEDSRVNQQVAK 678
Query: 1099 GALKKHGAIVTCVDCGRAAVDKLTPPHN-FDACFMDLQMPEMDGFQATWQIRHLENEINE 1157
LKK G V D G+ VDK HN + FMD QMP +DGF+AT QIR LE
Sbjct: 679 MMLKKLGFEVDIADNGKVGVDKFK--HNEYQMIFMDCQMPVLDGFEATKQIRALEE---- 732
Query: 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
G S H+PI+A+TA+V+ C GMD+++ KP L VA
Sbjct: 733 ----GTSK----------HIPIVALTANVVLKDKHLCFDVGMDEFLPKPVNQGTLREVVA 778
Query: 1218 RFF 1220
F
Sbjct: 779 SFL 781
>gi|428312486|ref|YP_007123463.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254098|gb|AFZ20057.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1949
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 216/656 (32%), Positives = 320/656 (48%), Gaps = 89/656 (13%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AEAA+ AKS+FLAT+SHEIRTPMN V+GM +L+DTE+ Q + +T NSG+ L+
Sbjct: 1161 KQAAEAANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTEVTPQQHQFVETIRNSGEALL 1220
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +KIESG+LE E PF L ++ L L + KA +K +ELA + + P +
Sbjct: 1221 TIINDILDFSKIESGKLELEEQPFKLRMCIEESLDLLAPKAAEKELELAYLIDSQTPVTI 1280
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GD R RQI+ NL+ N++KFT+ G + VSV V VK +V +S+ + +
Sbjct: 1281 AGDVTRLRQILVNLLSNAVKFTR-SGEVTVSV-----TAKGVPVKHEVGRESVGN--NPG 1332
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRI----------KLLVTVEDTGVGI 841
+ + + P +D K D + L + ++ V+DTG+GI
Sbjct: 1333 FSISPSPNTQPQLD--------KPCDPGTRQDTLSSVSVHPVPYPYYEIQFAVKDTGIGI 1384
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
P E R+F PF Q DSSTSR YGGTG+GL IS+ L E+MGG I SE G GS F FTV
Sbjct: 1385 PTERLDRLFQPFSQVDSSTSRHYGGTGLGLVISKRLCEMMGGRIWVESEVGKGSIFYFTV 1444
Query: 902 ---TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
LD Q G R L++DD + ++ + M A+
Sbjct: 1445 IAHAVYSSTPTDLDVAQPQ-------LEGKRLLIVDDNATNRKILTLQGKSWGMLTRAAH 1497
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLP 1017
S + A +LS L D + D ++ G+ + + R+K G + LP
Sbjct: 1498 SGREALDWLSQG-----------ELFDLAILDMQMPGMDGLTLATEIRKKPGYQ---ELP 1543
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE----DPESSKKLQQKRKK- 1072
+ L + E+ D + L KP++ S L + P + L +
Sbjct: 1544 LVMLTSIGKPESS-DPSQMSHFAAFLNKPIKQSQLYESLNQVLLGQPIKVRPLCSLYPEI 1602
Query: 1073 -PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
+L H L K IL+ +DN+VN++VA L++ G V G ++ + ++D
Sbjct: 1603 DSNLAHKLPLK-ILLAEDNVVNQQVALHLLQRLGYRADVVGNGLEVLEAVH-RQSYDVVL 1660
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH--------------- 1176
MD+QMPEMDG A +I + E A+GE+ F V L
Sbjct: 1661 MDVQMPEMDGLTAAHRISQESSFAWELEAAGENLITAFPGVSLTETHQQSNSPTSTNRPP 1720
Query: 1177 --VP------------ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
VP I+AMTA+ +Q E C++ GMDDY+SKP ++L A+++
Sbjct: 1721 EKVPGQPNSKSNKRPRIIAMTANAMQGDREMCLEAGMDDYISKPIRMKELVRALSK 1776
>gi|428769506|ref|YP_007161296.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428683785|gb|AFZ53252.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 1390
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 208/639 (32%), Positives = 311/639 (48%), Gaps = 126/639 (19%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ K +AE A+ AKS+FLAT+SHEIRTPMN V+GM +L+DT L+ Q ++A+
Sbjct: 698 QELQLAKEQAEKANQAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPLNNEQREFAEIIRT 757
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+++IND+LD +KIESG+LE E+ P + +V++ L L + KA KGIEL +++
Sbjct: 758 SADSLLTIINDILDFSKIESGKLELEYQPLSIINVIEESLDLLAPKAINKGIELIYFIAP 817
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P+ ++GD R RQI+ NL+ N++KFT ++G I VSV + S+ +K+ +LE
Sbjct: 818 DIPKTIMGDVTRLRQILVNLLNNAVKFT-NEGEIVVSVGV-----SRQSIKENILEY--- 868
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
+L+ +V+DTG+GIP
Sbjct: 869 -------------------------------------------ELIFSVKDTGIGIPSSR 885
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI-----GFVS-------EPGT 893
++F PF Q D+ST+R YGGTG+GL+I LV +MGG+I G ++ +P +
Sbjct: 886 MNKLFKPFSQVDASTTRHYGGTGLGLAICNRLVTMMGGQIWVESKGVIAGDFPSSYQPNS 945
Query: 894 -----GSTFSFTVT--FTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH 946
GS FSFT+ + N +P + + D L++DD I +V
Sbjct: 946 SLSDLGSIFSFTINTKVSSWLVNQENPSYSHILQDKV------ILIVDDNEINRQVLMIQ 999
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
L M + S + A L + P LA++ + D GL L KQ R
Sbjct: 1000 CHNLGMKTIITASGREALLALKNEQK----PDLAVLDMQMPGMD---GLTLA---KQIRL 1049
Query: 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKL 1066
L +NLP I L + +E + + D T LTKP++ S+L F
Sbjct: 1050 ---LPHCQNLPLILLSSIGSAEIQKSLQEVDWAAT-LTKPIKQSLLEDIF------INVC 1099
Query: 1067 QQKRKKPSLGHL-----------LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
Q+ R P L + +IL+ +DN+VN++V LK+ G V G
Sbjct: 1100 QENRNYPRLFSSSFSSPFEDIAGIAPLKILIAEDNIVNQKVITNILKRLGYRADVVANGL 1159
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
++ L ++D MD+QMPEMDG AT QIR L N N
Sbjct: 1160 EVMETLN-RQSYDLILMDVQMPEMDGLTATRQIRTLWNSPNSNFQG-------------- 1204
Query: 1176 HVP--ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
+P I+AMTA+ ++ E C+ GMDDY+SKP E+L
Sbjct: 1205 -IPPYIIAMTANAMEGDREICLAAGMDDYLSKPVRVEKL 1242
>gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
35110]
gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
35110]
Length = 1629
Score = 278 bits (710), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 214/673 (31%), Positives = 323/673 (47%), Gaps = 87/673 (12%)
Query: 557 HEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAE 616
H H + KQ+ PV +A V + I + I +VE E++E + A
Sbjct: 867 HFQHMKTKQQIPVLCSAFTIKHPVTGKPMAYAAI-SSDITIRKKVE---RELIEAREEAL 922
Query: 617 AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIND 676
A AK++FLA +SHEIRTPMN V+GM +L+DT L A Q +Y +T +SG L+++IND
Sbjct: 923 RAAQAKAEFLANMSHEIRTPMNAVIGMTGLLLDTPLTAEQREYVETIRSSGDALLTVIND 982
Query: 677 VLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPG 736
+LD +KIESG+LE E PF L + ++ + +FS+ A +K +EL ++ ++VP V GD
Sbjct: 983 ILDFSKIESGKLELEQYPFTLRNAIEECIDIFSATAAEKHLELVYFIHEKVPTKVSGDVT 1042
Query: 737 RFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYN 796
R RQI+ NLV N++KFT+ G + + V L D + V H DK YN
Sbjct: 1043 RLRQILVNLVSNAVKFTK-SGEVVLEVQLQQPREQNADERLMVFH------DHDDDK-YN 1094
Query: 797 TLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856
+P + D+ + L TV DTG+GIP + RIF F Q
Sbjct: 1095 ----YPQA-------ALQQFDDK-------KCTLHFTVRDTGIGIPADRLERIFHSFSQV 1136
Query: 857 DSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF-----TEGERNSL 911
D+ST+R YGGTG+GL+IS+ L ELM G++ SE G GSTF FT+T T+GE +
Sbjct: 1137 DASTTRKYGGTGLGLTISKHLCELMNGKMWVESELGKGSTFHFTITLERLPDTKGEYS-- 1194
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
S+ G AL++DD + + M+ H S + A +
Sbjct: 1195 -----------SKLAGKHALIVDDNATNRRILSLQSATWGMSSHTVGSGKNALELIHSGM 1243
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
D + D + + ML + RK L +++LP + L + ET
Sbjct: 1244 H-----------FDVGILDFHMPEMDGLMLAMELRK--LPQTQDLPLVMLTSAGNRET-V 1289
Query: 1032 DELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLK-GKQILV 1086
E G L KP++ S VL FQ+ ++ + + K S+ + +IL+
Sbjct: 1290 SETVGVGFSAFLNKPIKQSQLYDVLTDVFQKGELPVREKPKPKTKVSIDLAREIPLRILI 1349
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
+DN+VN+++ L+K G G ++ L +D MD+QMPEMDG AT
Sbjct: 1350 AEDNVVNQKLVLRILEKVGYRADVAANGAEVIEALK-SKTYDLILMDVQMPEMDGLTATR 1408
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
I + I+AMTA+ ++ E C++ GMDDY+SKP
Sbjct: 1409 YICQNWPRLERPF-------------------IIAMTANAMKGDREACLEAGMDDYLSKP 1449
Query: 1207 FEDEQLYTAVARF 1219
+ L A+ ++
Sbjct: 1450 VRFDDLQKALDKW 1462
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L GK L+VDDN NRR+ G V G+ A++ + +FD +D MPE
Sbjct: 1197 LAGKHALIVDDNATNRRILSLQSATWGMSSHTVGSGKNALELIHSGMHFDVGILDFHMPE 1256
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG ++R L + +P++ +T+ + + + + G
Sbjct: 1257 MDGLMLAMELRKLPQTQD--------------------LPLVMLTSAGNRETVSETVGVG 1296
Query: 1199 MDDYVSKPFEDEQLYTAVARFFMSG 1223
+++KP + QLY + F G
Sbjct: 1297 FSAFLNKPIKQSQLYDVLTDVFQKG 1321
>gi|302875422|ref|YP_003844055.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B]
gi|307689020|ref|ZP_07631466.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B]
gi|302578279|gb|ADL52291.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B]
Length = 949
Score = 278 bits (710), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 194/619 (31%), Positives = 319/619 (51%), Gaps = 105/619 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
++ + K AEAA++AKS+FLA +S EIRTPMNG+ G L++L T L + Q ++ + A ++
Sbjct: 312 QLYKAKEEAEAANIAKSKFLANMSREIRTPMNGIFGFLELLELTNLSSEQKEFIREAKSA 371
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+ +IND+LD +KIE+ +L E + F+L D +++ +SL + KA +KG+EL + + +
Sbjct: 372 SEVLLHIINDILDLSKIEARKLIMENISFNLRDAIEDTVSLLAPKAAEKGLELYVRIKED 431
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VPE VIGDP R RQI+ NL+ N++KFT+ KG +VS+ + LEK
Sbjct: 432 VPEEVIGDPSRLRQILNNLIYNAVKFTE-KG--YVSISM------------DYLEK---- 472
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
D + NF+ VEDTG+GI E
Sbjct: 473 ------------------DHEIALVNFE-------------------VEDTGIGIATEDI 495
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
++F F QAD+ST+R YGGTG+GL IS L+++MGG+I S+ G GSTF F V
Sbjct: 496 PKVFEAFNQADASTTRKYGGTGLGLPISYELIKMMGGDIRVESKLGEGSTFKFNVNLKIA 555
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+R S Q+ + D + +G +++D + + + Q + + A + A +
Sbjct: 556 KRAS----EQRCLFD--KLKGKNIIIVDGNENNINIIKSNFQGTGVNIFEAKNAGNAINI 609
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
+ +T ++ + +ID + D G L +K + ++ + I L+ S
Sbjct: 610 IISNANTE--NRIDIAIIDYQMSDM-TGYELATTIKT------IPFAKEIKLILLINLS- 659
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGC------FQEDPESSKKLQQKRKKPSLGHLLK 1080
+ + + + +G ++ L KP+R L+ C Q++ E ++K++ K + L
Sbjct: 660 QKGESNVAQENGFLSSLFKPIRRKDLLNCISKIFGLQKEDEENRKIEIKDAISETKNRLI 719
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTC---VDCGRAAVDKLTPPHNFDACFMDLQMP 1137
K IL+V+DN +NR++ +K TC VD A K ++D FMD QMP
Sbjct: 720 PK-ILLVEDNEINRKIFISMIKSRN--FTCDVAVDGSEAL--KAVEKKDYDIIFMDCQMP 774
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG+++T +IR LE GN H I+AMTA+ ++ +E+C++
Sbjct: 775 TMDGYESTAKIRKLE-----------------GNKK--HTRIVAMTANAMEGDSEKCIEA 815
Query: 1198 GMDDYVSKPFEDEQLYTAV 1216
GMDDY+SKP +++ +
Sbjct: 816 GMDDYISKPINFNKMFKII 834
>gi|260777827|ref|ZP_05886720.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC BAA-450]
gi|260605840|gb|EEX32125.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC BAA-450]
Length = 1057
Score = 278 bits (710), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 209/634 (32%), Positives = 313/634 (49%), Gaps = 116/634 (18%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
QVE+ E+ E +A+AE A KS FLA +SHEIRTPMN ++GM + + T+L Q DY
Sbjct: 282 QVED---ELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTPKQHDY 338
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
HNS L+ +IND+LD +KIE+G+L E + F+L DVL NV + KA +KG+EL
Sbjct: 339 ISKIHNSASLLLGIINDILDFSKIEAGKLSIEEIEFYLDDVLHNVSMVTGQKAFEKGLEL 398
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+ VP+ + GDP R QII NLV N++KFT+ +G I VSV + +RS
Sbjct: 399 LFDIPRDVPKTLYGDPLRLGQIIINLVNNAVKFTE-QGEISVSVKV---IRS-------- 446
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
LD+ +I+L +V+DTG+
Sbjct: 447 ------------------------------------LDD--------KIELGFSVKDTGI 462
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
G+ E ++F F QAD ST+R YGGTG+GLSI R LVELMGGEI SE GSTF F
Sbjct: 463 GMSEEQSSKLFNAFTQADGSTTRKYGGTGLGLSICRRLVELMGGEISVDSELNVGSTFRF 522
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
++ + P VPD+ + ALV+DD + L +S
Sbjct: 523 NISVGAVMDSGYTPV---VVPDL--LNHVHALVVDDNEHALLIMEDLLDIFLCKPTFVSS 577
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEI--GLVLHYMLKQQRRKGGLEISRNLP 1017
+LA L S + P LV +D W G+ ++QQ I + P
Sbjct: 578 GELALEELK-KASDAGQP-YDLVFMD---WKMPTMSGIEASQQIRQQV------IREHQP 626
Query: 1018 KIFLLATSISETDRDELKSD----GIVTLLTKPLRLSVLIGCFQE-----DPESSKKLQQ 1068
KI + ++ D+D++ S+ I L+KP+ S L + + S+ +Q
Sbjct: 627 KIVI----VTAYDKDDISSEVEELDIAGFLSKPVGQSYLFDLIMDLFGPTNNHSTPGVQS 682
Query: 1069 KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD----KLTPP 1124
+R K L G ++L+V+DN +N+++A +++ G VT + G A++ ++
Sbjct: 683 RRHKRD--KELDGLRVLLVEDNEINQQIAVELMEEKGITVTVANNGAQAIETLEKRIGTS 740
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
F+ FMDLQMP MDG++A+ +IR + +P++AMTA
Sbjct: 741 EMFEIIFMDLQMPVMDGYEASTRIR--------------------SDARYDDIPLIAMTA 780
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ E+C+ GM+D+VSKP + E L++ + R
Sbjct: 781 HAMVEERERCLNIGMNDHVSKPIDPEHLFSTIKR 814
>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
Length = 684
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 206/601 (34%), Positives = 296/601 (49%), Gaps = 99/601 (16%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+FLAT+SHEIRTP+N V+G+ +L +T+LDA Q D +T SG+ L+ INDVLD A
Sbjct: 158 KSEFLATMSHEIRTPLNAVIGLTGILENTKLDAHQQDLVETIRQSGETLLITINDVLDFA 217
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIESG+LE EF PF+L D L+ + LF+ KA QKG+EL ++ VP ++GD R RQI
Sbjct: 218 KIESGKLELEFKPFNLRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTLVGDVTRLRQI 277
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL+ N+IKFT D G + VSV + + NS Q++ T+
Sbjct: 278 LINLLSNAIKFT-DVGEVSVSVKVEHCYVT-------------NSTQNQDSHTSPTVC-- 321
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
+L +V+DTG+GIP + R+F F Q DSST+
Sbjct: 322 ----------------------------ILFSVKDTGIGIPKDRFNRLFQRFSQLDSSTT 353
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT----EGERNSLDPKWQQ 917
R YGGTG+GL IS+ L E+MGGEI S G GSTFSF V + E N + P+ Q
Sbjct: 354 RQYGGTGLGLIISKQLSEMMGGEIWVDSTLGEGSTFSFCVVLSVDQDASEPNLITPQPQ- 412
Query: 918 YVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLP 977
G R L+IDD ++ Q M S A ++L+ + V
Sbjct: 413 -------LAGKRVLIIDDNPTSCQILTQQTQCWGMIARSTQSGNEALAWLNQKEAFDV-- 463
Query: 978 QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE-TDRDELKS 1036
+ID+ + + GL L + Q G + LP + L T I + T + L
Sbjct: 464 ----AIIDRQMPEMN-GLTLGLQIHNQ---SGF---KELPLVLL--TPIGKMTTKTSLIE 510
Query: 1037 DGIVTLLTKPLRLSVLIGCF-QEDPESSKKLQQKRKKPSLGHLLKGKQ----ILVVDDNM 1091
L KP++L L Q + ++ + P G +Q IL+ +DN+
Sbjct: 511 RHFAACLPKPIKLGQLYNTLTQVLGRQATAIKSQPASPESGDSPLAQQLPLRILLAEDNI 570
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
VN++V LK+ G V G+ +D ++ ++D MD+QMPEMDG AT R++
Sbjct: 571 VNQKVELLLLKRLGYQADLVSNGQEVLDAIS-RQSYDVILMDVQMPEMDGLTAT---RYI 626
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
+++ W I+A+TA+ +Q E C+K GMDDY+SKP
Sbjct: 627 CQNYSQRP---------------W---IIALTANAMQEDRETCLKAGMDDYISKPIRQAD 668
Query: 1212 L 1212
L
Sbjct: 669 L 669
Score = 48.9 bits (115), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 26/140 (18%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT--PPHNFDACFMDLQM 1136
+KG IL+VDD N R+ L G V V G+ A++ + PP D +D++M
Sbjct: 9 IKGD-ILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAVNTDPP---DLILLDIKM 64
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PEMDG+ E+ +++ + E +AE +P++ ++A + +
Sbjct: 65 PEMDGY-----------EVCQRLKADEKTAE---------IPVIFLSALDEVWDKVKAFE 104
Query: 1197 CGMDDYVSKPFEDEQLYTAV 1216
G DY++KPF+ E++ V
Sbjct: 105 VGGVDYITKPFQLEEVIARV 124
>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
Length = 1500
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 198/629 (31%), Positives = 315/629 (50%), Gaps = 117/629 (18%)
Query: 598 IAQVENDYHEMMEL---------KARAEAADVA--KSQFLATVSHEIRTPMNGVLGMLQM 646
I +E ++ MM + KAR A + A K +F A+VSHE+RTP+NGV+GML++
Sbjct: 238 IMDMEGAFNTMMTVLEAREQELKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLEL 297
Query: 647 LMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLS 706
L +TEL Q +Y Q A SG+ L+ LI ++LD ++IESG+ + + V F+L + LD+V+
Sbjct: 298 LSNTELTPNQREYVQVACGSGETLLDLIGNILDFSRIESGKFKLDSVDFYLQETLDDVIG 357
Query: 707 LFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766
L +++A +K +E+ V++ VP + GD R RQI+ NL+GN++KFT+
Sbjct: 358 LLAAQAQRKDLEIGYVVAENVPLFMRGDATRIRQILINLMGNAVKFTE------------ 405
Query: 767 DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG 826
+ +V ++ ++LEK
Sbjct: 406 ---QGEVSIEVRLLEKKAK----------------------------------------- 421
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
++ L V DTG+GIPLE R+F F QADSST+R YGGTG+GL+I R LV+LMGG++G
Sbjct: 422 KLVLHFEVRDTGIGIPLEFLARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDLG 481
Query: 887 FVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH 946
+ GS F FTV E + P+ Q + + +E GLR L+++D ++
Sbjct: 482 VENNLDKGSLFWFTVPLEE----MIMPQAGQALTNKAEVAGLRLLIVEDSTVSRRFLGQT 537
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
M A + Q A L + LVL+D++ D LK
Sbjct: 538 FSSWGMYHGCAENGQQALKMLRSAVAEG--RSYDLVLVDENTPD----------LK---- 581
Query: 1007 KGGLEISRNLPKIFLLAT-SISETDR------DELKSDGIVTLLTKPLRLSVLIGCFQED 1059
GLE+++ + + L+A+ I R D G+V + KP++ S L
Sbjct: 582 --GLELAQQIAEDSLIASVKIILMGRQRHPVSDISPLSGVVNYVAKPVQQSSLYNTIITA 639
Query: 1060 PESSKKLQQKRKKPSLGHL-LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
+ +K++ + ++ +++LVV+DN VN++VA G L++ G V V G+ A+
Sbjct: 640 VKQNKEVVSETLSAAIEETEFSDRRVLVVEDNRVNQQVAVGMLERLGCRVEVVSNGQEAL 699
Query: 1119 DKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
D ++ ++ MD MP+MDG++AT QIR E G VP
Sbjct: 700 DAMS-GKVYELVLMDCHMPQMDGYEATRQIRIRE-------------------AGKKQVP 739
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
I+AMTA+V + +++C+ GM+DY+ KP
Sbjct: 740 IIAMTANVRKGDSDKCISAGMNDYLPKPL 768
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 64/168 (38%), Gaps = 24/168 (14%)
Query: 1056 FQEDPESSKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVD 1112
F E + LQQ+ K+ L + K ++L+VDD+ R L+K G + V
Sbjct: 896 FSEYSFVKRALQQENESGKEVCLFNNRKKSRVLIVDDDRTMRMALRNVLEKGGYWIDEVI 955
Query: 1113 CGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNV 1172
G A+ D MD MP +DGF A QIR L
Sbjct: 956 NGSQAL-AFCKQQMPDLVLMDAVMPVLDGFNACAQIRDLP-------------------- 994
Query: 1173 GLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
G H P+L +TA S E G DY+ KP L VAR
Sbjct: 995 GSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLQKRVARLL 1042
Score = 44.3 bits (103), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 23/202 (11%)
Query: 881 MGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRA 940
+ G + +V++P S+ T+ + + + + +EF R LV++D +
Sbjct: 616 LSGVVNYVAKPVQQSSLYNTIITAVKQNKEVVSETLSAAIEETEFSDRRVLVVEDNRVNQ 675
Query: 941 EVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYM 1000
+V L+RL V V ++ Q A +S VL + +D ++I +
Sbjct: 676 QVAVGMLERLGCRVEVVSNGQEALDAMSGKVYELVLMDCHMPQMDGYEATRQIRI----- 730
Query: 1001 LKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL-------- 1052
R+ G + +P I + ++ + D D+ S G+ L KPLRLSVL
Sbjct: 731 -----REAG---KKQVP-IIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWL 781
Query: 1053 -IGCFQEDPESSKKLQQKRKKP 1073
G D ES++ ++R+ P
Sbjct: 782 GTGSADTDSESTQMESEERETP 803
>gi|119718530|ref|YP_925495.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
gi|119539191|gb|ABL83808.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
Length = 1090
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 219/619 (35%), Positives = 308/619 (49%), Gaps = 88/619 (14%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+A+ E ++ E + A A KS+FLAT+SHEIRTPMNGV+G+ +L+ +ELD Q
Sbjct: 406 VAERERSAAQLAEARDDAMEASRLKSEFLATMSHEIRTPMNGVIGLTDLLLLSELDDHQR 465
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
A+ +G L+ +IND+LD +KIESG+LE E F + V D V S+ S A+ KG+
Sbjct: 466 RLAENLQGAGLTLLGIINDILDLSKIESGKLELESADFDVRAVFDQVASVLSGPAHAKGL 525
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + VP + GD RF QI+TNL N++KFT D+G + V+
Sbjct: 526 ELVVACHPEVPVQLRGDAVRFGQILTNLGSNAVKFT-DQGEVV--------------VQA 570
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+VL + + +H+S+ G VV L V V DT
Sbjct: 571 RVL--AEHEHEHESESEPGPGPGHEVV-------------------------LQVDVADT 603
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
GVGI ++ R+F F QAD ST+R +GGTG+GL+ISR L +GGEI SEPG GSTF
Sbjct: 604 GVGIEPHSRERLFDAFTQADPSTTRRHGGTGLGLAISRQLAIALGGEIWVESEPGRGSTF 663
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
SFT F G + + G RALVIDD E R+ L+ ++
Sbjct: 664 SFTARFGRGSGATGASREH-----ARHLAGRRALVIDDN----ETNRFILEE-QLGAWRM 713
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDV--WDKEIGLVLHYMLKQQRRKGGLEISRN 1015
+ +AC+ T + + L + A DV D + ML +Q R + S
Sbjct: 714 RPVAVACA----TEAIATLREAARSGDPYDVALLDLMMPGTDGLMLARQIRA---DPSVG 766
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKP 1073
P + LL TS R+E++ G+ L+KP+R L G Q +++ P
Sbjct: 767 APAMLLL-TSDQTVTREEVEGAGVHASLSKPVRHGELRGALQALLGDATTRPAPASPAGP 825
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L G ++LVV+DN VN+ VA G L+ G V V G AV LT PH + A MD
Sbjct: 826 GL-----GIRVLVVEDNQVNQLVAAGLLENLGCTVDVVSDGVEAVRLLTRPHEYAAALMD 880
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+MP +DGF AT Q+R E VG VPI+A+TA ++ E+
Sbjct: 881 CRMPRLDGFDATRQVRRHE------------------PVGR-RVPIIALTASAMEGERER 921
Query: 1194 CMKCGMDDYVSKPFEDEQL 1212
C+ GMDDY++KP + +L
Sbjct: 922 CLDAGMDDYLTKPVDTAEL 940
>gi|427421152|ref|ZP_18911335.1| PAS domain S-box [Leptolyngbya sp. PCC 7375]
gi|425757029|gb|EKU97883.1| PAS domain S-box [Leptolyngbya sp. PCC 7375]
Length = 1053
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 207/641 (32%), Positives = 312/641 (48%), Gaps = 120/641 (18%)
Query: 600 QVENDYHEMMELKAR--AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
++E ++ KAR A AA KS+FLAT+SHEIRTPMN V+GM +L+DT L Q
Sbjct: 340 EIERQQAAIILAKARDDALAATKTKSEFLATMSHEIRTPMNAVIGMTSLLLDTALTDEQR 399
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
++ T NSG L++LIND+LD +KIESG LE E PF L ++ L ++KA++K +
Sbjct: 400 NFVTTVRNSGNALLTLINDILDFSKIESGHLELEAHPFDLRACIEEAFDLIAAKASEKQL 459
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
ELA + +P +GD R RQ++ NL+GNS+KFT +G I +SV
Sbjct: 460 ELAFNIDSAIPNTFVGDVTRLRQVLVNLLGNSVKFTH-RGEISISV-------------- 504
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
N S P KS L T+ L V+DT
Sbjct: 505 -----------------TNWKSSSPAEPGSKS------LAETHQ-------SLCFAVKDT 534
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP + R+F F Q DSST+R YGGTG+GL+I + L E+MGG+I S+ GSTF
Sbjct: 535 GIGIPTQRIARLFKAFSQVDSSTTRKYGGTGLGLAICKQLTEMMGGKIWVESQVDQGSTF 594
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV- 956
FT+T + +++ ++ + S+ G R L++D+ + ++ Q M
Sbjct: 595 FFTITL----QTTVEKSSRKRISPSSQLVGKRLLIVDNNATNRQILEKQTQSWGMLTRTT 650
Query: 957 -ANSMQLACSYLSDTCSTSVL----PQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
+ + L C + ++L P++ + + +++ D L
Sbjct: 651 CSGAEALKCFERGEVFDLAILDMQMPEMDGMTLAQEIHD-------------------LP 691
Query: 1012 ISRNLPKIFLLATS---ISETDRDELKSDGIVTLLTKPLRLSVLI--------GCFQEDP 1060
++LP + L + IS+ D ++ V L KP++ + L+ G F
Sbjct: 692 DQKSLPLMMLTSVGKYQISQVDIEK----HFVAFLNKPIKQAQLLENLVRLCAGKF---- 743
Query: 1061 ESSKKLQQKRKKPSLGHLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
K Q K+ ++ H L K QIL+ +DN VN+++A LKK G V G A
Sbjct: 744 --VKFEQPKKLVTTIDHHLAKKHPLQILLAEDNGVNQQLATQLLKKMGYRADLVGNGLEA 801
Query: 1118 VDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177
++ L ++D MDLQMP+MDG AT +I EQ ++ W
Sbjct: 802 INAL-ERQSYDVILMDLQMPDMDGLTAT-------QKICEQWSAANRP---------W-- 842
Query: 1178 PILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
I+A+TA+ +Q E C+K GMDDY+SKP E+L A+ R
Sbjct: 843 -IIAVTANAMQGDREACLKAGMDDYISKPIRIEELVAALQR 882
>gi|37676244|ref|NP_936640.1| hypothetical protein VVA0584 [Vibrio vulnificus YJ016]
gi|37200785|dbj|BAC96610.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
Length = 1072
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 201/623 (32%), Positives = 304/623 (48%), Gaps = 101/623 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + KA+AE A KS FLA +SHEIRTPMN ++GM + + T+L Q DY H+S
Sbjct: 285 ELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTPKQHDYVSKIHSS 344
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIE+G+L E F+L DV NV + KA +KG+EL +
Sbjct: 345 ATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKAFEKGLELIFDLPRE 404
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
P ++GDP R QII NLV NS+KFT+ KG I V S
Sbjct: 405 TPRCLLGDPLRLGQIIINLVNNSVKFTE-KGEITV------------------------S 439
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V H +E L ++L + DTG+G+ +
Sbjct: 440 VHH-----------------------------IRNVEDL--VELEFRISDTGIGMTDKQM 468
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+FT F QAD ST+R YGGTG+GLSI R LVELMGG+I SE G GS F F V
Sbjct: 469 KSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVESEAGKGSHFIFNVLVKAD 528
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
NS P VP +R LV+DD E+ + L L V +ANS Q A
Sbjct: 529 PANSSAPS---IVP--QSLEKIRILVVDDNEHALEIMQEMLSTLPGKVALANSGQQAVDC 583
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
+ + L+ +D ++ + + G+ ++++ S P+I ++
Sbjct: 584 IRKASEQR--EKFDLIFMDWNMPEMD-GIETSRLIRESF------ASEYQPQIVIVTAYD 634
Query: 1027 SETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPS--LGHLLK 1080
E D I L+KP+ S +L+ F D + ++ +K++ P+ + LK
Sbjct: 635 KEDVLDATNDLDIAGFLSKPVGQSYLFDLLVELFGRDRNPTTQI-RKKELPTHDSKNDLK 693
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP----PHNFDACFMDLQM 1136
G ++L+ +DN +N+++A ++ +G +VT + G+ A+D L +FD FMDLQM
Sbjct: 694 GLKVLLTEDNEINQQIAVELMEGNGLLVTVANNGQEALDHLEAMAKGESHFDIIFMDLQM 753
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P MDG++A+ +IR N +P++AMTA + E+C+
Sbjct: 754 PVMDGYEASHRIR--------------------ANSSYDTIPLIAMTAHAMVEERERCLN 793
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM+D++SKP + E L+ + ++
Sbjct: 794 LGMNDHISKPIDPEILFNTIRKW 816
>gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase [Opitutus
terrae PB90-1]
gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase [Opitutus
terrae PB90-1]
Length = 758
Score = 277 bits (708), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 211/640 (32%), Positives = 299/640 (46%), Gaps = 103/640 (16%)
Query: 590 IFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMD 649
+ H I R VE D + K AEAAD AKS FLA +SHEIRTPMNGVLGM +L+
Sbjct: 201 LLHEEIGRRMLVELD---LKRAKDAAEAADRAKSVFLANMSHEIRTPMNGVLGMANLLLA 257
Query: 650 TELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFS 709
T L+ Q D A+T SG+ L+++IND+LD +KIE+GR+E E + F L D L+ L L +
Sbjct: 258 TPLNPEQHDLAETLCQSGESLLTIINDILDFSKIEAGRMELEAIDFDLADNLELALDLHA 317
Query: 710 SKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV 769
A +K +EL + + VP V GDPGR RQI+ NLVGN+IKFT+ KG + V V
Sbjct: 318 EAAARKHLELVVNIDPAVPRHVRGDPGRLRQILLNLVGNAIKFTE-KGEVVVKV------ 370
Query: 770 RSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIK 829
+V H +W N R+
Sbjct: 371 ----------------TVDH-------------------NWPN--------------RVL 381
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
L V DTG+GIP Q ++F PF+QAD+ST+R +GG+G+GL I + L ELM G IG S
Sbjct: 382 LRFAVTDTGIGIPEWVQEKLFQPFVQADTSTTRRFGGSGLGLVICKRLAELMSGSIGVES 441
Query: 890 EPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQR 949
+P GSTF FTV +++ P VP +S RG AL++DD + + ++
Sbjct: 442 KPNEGSTFWFTVEL----KHAFHPVTVGVVP-LSTLRGHHALIVDDNATNRSLLKHLCNA 496
Query: 950 LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009
+ V S+ A L +T+ LV+ D H+M +
Sbjct: 497 WSLRHSVMESVDEALVELHR--ATAAGTPFDLVITD------------HHMPGRDGLDLA 542
Query: 1010 LEISRNL----PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE-----DP 1060
I+R+ P + LL + + +L KP+ L P
Sbjct: 543 AAINRDTTIPRPALVLLTSRGERLPQSQLDEYRFAACELKPVHARSLHTTLARVLAHIRP 602
Query: 1061 ESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
KP+ K +IL+ +DN VN++V L+ G V GR ++
Sbjct: 603 GVPALPDGNGVKPA-APPAKEARILIAEDNPVNQKVTLLQLRNLGYPADVVPNGREVLEA 661
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
L + MD QMPEMDG +AT +IR + + I S + I+
Sbjct: 662 LR-RKAYALVLMDAQMPEMDGVEATRKIREAQAAGDRTIPSP--------------LRII 706
Query: 1181 AMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
AMTA+ + E C+ GMDDY++KP + L +AR+
Sbjct: 707 AMTANAMTGDRELCLAAGMDDYLAKPVKPGDLRDMLARYL 746
>gi|388257542|ref|ZP_10134721.1| putative sensor/response protein [Cellvibrio sp. BR]
gi|387938709|gb|EIK45261.1| putative sensor/response protein [Cellvibrio sp. BR]
Length = 902
Score = 277 bits (708), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 217/679 (31%), Positives = 335/679 (49%), Gaps = 132/679 (19%)
Query: 569 VPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMEL---------------KA 613
P +A+ +G L+ F+A ++RI +++ + EL +
Sbjct: 199 APESAVRDEVG------LLTRRFNAMLDRIEMQDSELRQNQELLEQRVLERTLELQYARE 252
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+AEAA AKS FLA +SHEIRTP+NG++GM +L++TELD+ Q +A+ A S +DL+ +
Sbjct: 253 QAEAASKAKSDFLAVMSHEIRTPLNGIMGMTGLLLETELDSKQKRFARVARRSSEDLLLI 312
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IND+LD +KIE+G+LE E +PF L+ +++++ ++ A+ K +EL + + P VIG
Sbjct: 313 INDILDFSKIEAGKLELELLPFPLNTLIEDIAERYAPIAHGKNLEL-LCRTPLPPVSVIG 371
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
D R Q+ITNL+ N+IKFT D G + +SV L V +K+D+
Sbjct: 372 DGPRLGQVITNLLSNAIKFT-DSGEVEISVGL---------------------VANKADQ 409
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
++L V DTG+GI E ++F F
Sbjct: 410 ----------------------------------LQLRFAVRDTGIGISPEQSAKLFQSF 435
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
QADSS SR YGGTG+GL+IS+ L+E+MGG+I S+PG GS F F + + P
Sbjct: 436 TQADSSMSRKYGGTGLGLAISQRLIEMMGGQIQLESQPGEGSRFYFDLLLAQHINTEAAP 495
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
++Q P LR LV+DD + ++ L+ + +A S A + L+ T
Sbjct: 496 EFQPLKP-------LRTLVVDDNEVNRDILDDWLRAWGITPVLAESAVEALALLNKQAKT 548
Query: 974 SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
L+L D + D G +L + I +L I L I+ ++
Sbjct: 549 DA--PFELLLTDWAMPDMNAGALLDNL-------AASPIFESLAVIVLCPAGIA--IQES 597
Query: 1034 LKSDGIVTLLTKPLRLS--------VLIGCFQEDPESSKKLQQKRKKPSLG-HLLKGKQI 1084
L + + +L KP R + V G F P S+ L + KP G L+G+ +
Sbjct: 598 LANRAL--MLFKPARQTELHGLIAQVAAGDFIYQPLGSESLVSEGAKPMPGVKPLRGR-V 654
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA---VDKLTPPHNFDACFMDLQMPEMDG 1141
L+ +DN VN+ VA+ L++ G +T + G+ A +D+L+ FD MD QMP MDG
Sbjct: 655 LLAEDNPVNQEVAKAMLQRMGLDMTIANNGQEALALIDRLS----FDLVLMDCQMPVMDG 710
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
F+A+ +IR E +GL +PI+A+TA+ I E C+ GMDD
Sbjct: 711 FEASRRIRQREQ-----------------TMGLNPLPIIALTANAISGDREHCLAQGMDD 753
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
Y+SKPF QL ++R+
Sbjct: 754 YLSKPFSQLQLNQTLSRWL 772
>gi|359459602|ref|ZP_09248165.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris sp. CCMEE 5410]
Length = 1582
Score = 276 bits (707), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 209/657 (31%), Positives = 323/657 (49%), Gaps = 94/657 (14%)
Query: 574 INASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEI 633
I A G V I L GH+ + + + + + + A+AA+VAKS+FLAT+SHEI
Sbjct: 1000 IEAVAGQVGIALAHGHLLEQEQQQRQTLTQNNTALKQARKDADAANVAKSEFLATMSHEI 1059
Query: 634 RTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFV 693
RTPMN V+GM +L++T LD Q D+ +T +SG L++LIND+LD +KIE+G+LE E
Sbjct: 1060 RTPMNAVIGMTGLLLNTTLDNQQRDFVETIRSSGDALLTLINDILDFSKIEAGKLEFEEQ 1119
Query: 694 PFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFT 753
PF L ++ L L + +A K +ELA P ++GD R RQI+ NL+ N +KFT
Sbjct: 1120 PFSLRACIEESLRLVAPRAIDKQLELAYLFDPSTPNHIVGDVTRLRQILVNLLTNGVKFT 1179
Query: 754 QDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENF 813
++G + + V D+ D + + + Q K NF
Sbjct: 1180 -EQGEVVIYVQ---------DITDTDIAQPETTPQRK---------------------NF 1208
Query: 814 KMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSI 873
+ N + Q V D+G+GIP + R+F F Q D+ST++ YGGTG+GL+I
Sbjct: 1209 TDIQNQRRLVQF-------EVRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGLGLAI 1261
Query: 874 SRCLVELMGGEIGFVSEPGTGSTFSFTVTF---TEGERNSLDPKWQQYVPDVSEFRGLRA 930
R L ++MGG I S+ G GS+F FT+ EGE N+LD Q G +
Sbjct: 1262 CRSLSQMMGGRIWVESKAGVGSSFFFTIAVPVAPEGE-NTLDQSQQL-------LDGKQL 1313
Query: 931 LVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL-SDTCSTSVLPQLALVLIDKDVW 989
LV+DD + Q M + + A + L SD+ + L ++D +
Sbjct: 1314 LVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEALALLESDS-------KFDLAILDMQMP 1366
Query: 990 DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET--DRDELKSDGIVTLLTKPL 1047
+ + G+ L ++Q L+ ++LP + L + E + E++ I L KP+
Sbjct: 1367 EMD-GVELARHIRQ------LDQRKHLPLVMLSSLGQDEIIKHKQEIQFSAI---LNKPI 1416
Query: 1048 RLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK----GKQILVVDDNMVNRRVAEGALKK 1103
+ S L E E +++Q K PS + + QIL+ +D +VN++VA LK+
Sbjct: 1417 QQSYLYDALAEIFE-GQRVQVKPTVPSPANTEEQGDPSLQILLAEDIVVNQKVALLILKQ 1475
Query: 1104 HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163
G + G ++ L ++D MD+QMPEMDG A RH++ + E+
Sbjct: 1476 LGYRADVANNGEEVLEALH-RQSYDVVLMDVQMPEMDGLTAA---RHIKEQWQEED---- 1527
Query: 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
I+A+TA+ +Q E CM GM DYVSKP ++L +A R+F
Sbjct: 1528 ------------QPYIIALTANAMQGDREMCMAAGMHDYVSKPIRVDELKSAFERYF 1572
>gi|144898063|emb|CAM74927.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Magnetospirillum gryphiswaldense MSR-1]
Length = 1117
Score = 276 bits (706), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 208/620 (33%), Positives = 304/620 (49%), Gaps = 123/620 (19%)
Query: 612 KARAEA--ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
+AR EA A+ AKS FLA +SHEIRTPMN ++G+ + + T LD Q DY N+ +
Sbjct: 363 QARDEADQANQAKSAFLANMSHEIRTPMNAIIGLSGLALRTGLDPRQRDYLIKIQNASQT 422
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+ +IND+LD +KIE+GRLE E + F + DVLD+V +L + +A +KG+E+ + +P+
Sbjct: 423 LLGIINDILDFSKIEAGRLEFEQIEFSITDVLDDVANLITRRAEEKGLEIVFATTGDLPQ 482
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
VIGDP R Q+ITNL N+IKFT G + V V L Q
Sbjct: 483 KVIGDPLRLAQVITNLCTNAIKFTH-VGEVVVRVEL----------------------QS 519
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
SD G+ LL +V DTG+G+ + R+
Sbjct: 520 ISD---------------------------------GKACLLFSVRDTGIGLTEQQAARL 546
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--TEGE 907
F PF QAD+ST+R +GGTG+GLSI R +VELM G I SE G GSTFSFT + G
Sbjct: 547 FEPFSQADASTTRQFGGTGLGLSICRRMVELMEGRIWVDSEHGKGSTFSFTASLPMPTGT 606
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
+L P+WQ + RG R +V DD + V L+ LE V A Q A + +
Sbjct: 607 ATAL-PRWQ-------DLRGARVMVADDNATTRAVLGEMLRSLECQVTEAEDGQAALAEI 658
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEI--GLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
+ P +VL+D W + GL +KQ ++ + +P I +
Sbjct: 659 M-RAEAAGEPPYKVVLMD---WRMPVMDGLEASKRIKQS------DVLQVIPVIIM---- 704
Query: 1026 ISETDRDE-LKSDGIVT----LLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH--- 1077
++ +DR+E ++ +G VT LL KP+ S+L S + +P LGH
Sbjct: 705 VTASDREEVMEQNGAVTAIDSLLVKPVNPSLLFDTMMT-LASGGHVPGISVEP-LGHGHD 762
Query: 1078 -------LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFD 1128
++G+ +L+V+DN +N++VA L V + G A+ L +D
Sbjct: 763 GDAGQLEAVRGRHVLLVEDNEINQQVASEILAYWQVGVALANNGEEALMALDAAGADGYD 822
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
A MD+QMP MDG +AT +IR + +PI+AMTA +
Sbjct: 823 AVLMDIQMPVMDGIEATRRIR--------------------ADPRFTGLPIIAMTAHALA 862
Query: 1189 ASNEQCMKCGMDDYVSKPFE 1208
++C+ GM+D+V+KP E
Sbjct: 863 EERDRCLDAGMNDHVAKPIE 882
>gi|343497047|ref|ZP_08735129.1| sensory box sensor histidine kinase/response regulator [Vibrio
nigripulchritudo ATCC 27043]
gi|342820169|gb|EGU54997.1| sensory box sensor histidine kinase/response regulator [Vibrio
nigripulchritudo ATCC 27043]
Length = 1322
Score = 276 bits (706), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 193/619 (31%), Positives = 306/619 (49%), Gaps = 100/619 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
+++E K A+ K FLA +SHEIRTPMN ++GM +++ ++L Q DY + S
Sbjct: 578 DLIESKESADKLSKIKGDFLANMSHEIRTPMNAIMGMTHLVLSSDLGEKQRDYVEKIDYS 637
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K L+ +IND+LD +K+E+G+L+ E F+L VLDN+ S+ S KA KGIEL VS
Sbjct: 638 SKQLLGIINDILDFSKVEAGKLQIENTDFNLDKVLDNLASVLSVKAENKGIELIFNVSPN 697
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT D G + +S +++++R++ K VL+ S
Sbjct: 698 IPNQLIGDPLRLGQVLINLAGNAVKFT-DTGEVIIS--VSEELRNE---KSAVLKFS--- 748
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
VEDTG+G+ E
Sbjct: 749 -----------------------------------------------VEDTGIGMTPEQM 761
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+F F Q D+ST+R YGGTG+GLSIS+ L++LMGGEI S G GS F F + G
Sbjct: 762 SGLFQAFSQGDTSTTRKYGGTGLGLSISQQLIQLMGGEIMVSSHYGRGSHFWFELELDIG 821
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
E P ++Y+ +++ + RALVIDD + L + V VA++ A
Sbjct: 822 EER---PTKERYL--ITQHK--RALVIDDNDTARLIVASMLSDMMFEVDVASNASDAFHI 874
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
L Q L+L+D + + + + ++ K G K+ L+
Sbjct: 875 LEQAQK-----QYDLLLVDWQMPEMDGVQTIEHIRKHDLSPGS--------KMILITAYG 921
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE---SSKKLQQKRKKPSLGHLLKGKQ 1083
++ D ++ I L+ KP+ S L+ + S +++++ + P + H + G +
Sbjct: 922 NQLDFNDQYGHIIDGLVLKPINPSNLLDTIVDTLGSYISKEEIKEAAESPEVVHDISGTR 981
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
IL+V+DN+ N+ +A L+ GA V+ + G A+D L H FD MD+QMP MDG
Sbjct: 982 ILLVEDNITNQEIASTILENEGAQVSIANHGIEALDML-DNHTFDVVLMDMQMPVMDGLT 1040
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT +IR + ++ +P+LAMTA+ ++ E CM GM+ ++
Sbjct: 1041 ATKEIRKIYDD--------------------KTLPVLAMTANAMREDVESCMNVGMNAHI 1080
Query: 1204 SKPFEDEQLYTAVARFFMS 1222
+KP L ++ F S
Sbjct: 1081 AKPIHVPSLLAKISEFTQS 1099
>gi|27366536|ref|NP_762063.1| Two-component system sensor protein [Vibrio vulnificus CMCP6]
gi|27358102|gb|AAO07053.1| Two-component system sensor protein [Vibrio vulnificus CMCP6]
Length = 1072
Score = 276 bits (706), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 199/623 (31%), Positives = 305/623 (48%), Gaps = 101/623 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + KA+AE A KS FLA +SHEIRTPMN ++GM + + T+L Q DY H+S
Sbjct: 285 ELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTPKQHDYVSKIHSS 344
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIE+G+L E F+L DV NV + KA +KG+EL +
Sbjct: 345 ATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKAFEKGLELIFDLPRE 404
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
P ++GDP R QII NLV NS+KFT+ KG I V S
Sbjct: 405 TPRCLLGDPLRLGQIIINLVNNSVKFTE-KGEITV------------------------S 439
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V H ++ E+ ++L + DTG+G+ +
Sbjct: 440 VHH-----------------IRNVEDL--------------VELEFRISDTGIGMTDKQM 468
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+FT F QAD ST+R YGGTG+GLSI R LVELMGG+I SE G GS F F V
Sbjct: 469 KSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVESEAGKGSHFIFNVLVKAD 528
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
NS P VP +R LV+DD E+ + L L V +ANS Q A
Sbjct: 529 PANSSAPS---IVP--QSLEKIRILVVDDNEHALEIMQEMLSTLPGKVALANSGQQAVDC 583
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
+ + L+ +D ++ + + G+ ++++ S P+I ++
Sbjct: 584 IRKASEQR--EKFDLIFMDWNMPEMD-GIETSRLIRESF------ASEYQPQIVIVTAYD 634
Query: 1027 SETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPS--LGHLLK 1080
E D I L+KP+ S +L+ F D + ++ +K++ P+ + LK
Sbjct: 635 KEDVLDATNDLDIAGFLSKPVGQSYLFDLLVELFGRDRNPTTQI-RKKELPTHDSKNDLK 693
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP----PHNFDACFMDLQM 1136
G ++L+ +DN +N+++A ++ +G +VT + G+ A++ L +FD FMDLQM
Sbjct: 694 GLKVLLTEDNEINQQIAVELMEGNGLLVTVANNGQEALEHLEAMEKGESHFDIVFMDLQM 753
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P MDG++A+ +IR N +P++AMTA + E+C+
Sbjct: 754 PVMDGYEASHRIR--------------------ANSSYDTIPLIAMTAHAMVEERERCLN 793
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM+D++SKP + E L+ + ++
Sbjct: 794 LGMNDHISKPIDPEILFNTIRKW 816
>gi|320158373|ref|YP_004190751.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O]
gi|319933685|gb|ADV88548.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O]
Length = 1072
Score = 276 bits (705), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 199/623 (31%), Positives = 305/623 (48%), Gaps = 101/623 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + KA+AE A KS FLA +SHEIRTPMN ++GM + + T+L Q DY H+S
Sbjct: 285 ELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTPKQHDYVSKIHSS 344
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIE+G+L E F+L DV NV + KA +KG+EL +
Sbjct: 345 ATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKAFEKGLELIFDLPRE 404
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
P ++GDP R QII NLV NS+KFT+ KG I V S
Sbjct: 405 TPRCLLGDPLRLGQIIINLVNNSVKFTE-KGEITV------------------------S 439
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V H ++ E+ ++L + DTG+G+ +
Sbjct: 440 VHH-----------------IRNVEDL--------------VELEFRISDTGIGMTDKQM 468
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+FT F QAD ST+R YGGTG+GLSI R LVELMGG+I SE G GS F F V
Sbjct: 469 KSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQIRVESEAGKGSHFIFNVLVKAD 528
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
NS P VP +R LV+DD E+ + L L V +ANS Q A
Sbjct: 529 PANSSAPS---IVP--QSLEKIRILVVDDNEHALEIMQEMLSTLPGKVALANSGQQAVDC 583
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
+ + L+ +D ++ + + G+ ++++ S P+I ++
Sbjct: 584 IRKASEQR--EKFDLIFMDWNMPEMD-GIETSRLIRESF------ASEYQPQIVIVTAYD 634
Query: 1027 SETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPS--LGHLLK 1080
E D I L+KP+ S +L+ F D + ++ +K++ P+ + LK
Sbjct: 635 KEDVLDATNDLDIAGFLSKPVGQSYLFDLLVELFGRDRNPTTQI-RKKELPTHDSKNDLK 693
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP----PHNFDACFMDLQM 1136
G ++L+ +DN +N+++A ++ +G +VT + G+ A++ L +FD FMDLQM
Sbjct: 694 GLKVLLTEDNEINQQIAVELMEGNGLLVTVANNGQEALEHLEAMAKGESHFDIVFMDLQM 753
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P MDG++A+ +IR N +P++AMTA + E+C+
Sbjct: 754 PVMDGYEASHRIR--------------------ANSSYDTIPLIAMTAHAMVEERERCLN 793
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM+D++SKP + E L+ + ++
Sbjct: 794 LGMNDHISKPIDPEILFNTIRKW 816
>gi|427707466|ref|YP_007049843.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
gi|427359971|gb|AFY42693.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
Length = 1567
Score = 276 bits (705), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 213/672 (31%), Positives = 325/672 (48%), Gaps = 119/672 (17%)
Query: 573 AINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHE 632
A+ A +G I L H+ + ++ + + K +AEAA+ AKS+FLA +SHE
Sbjct: 844 AVAAQVG---IALAQAHLLEQETRQREELTLKNFALQQAKRQAEAANRAKSEFLAMMSHE 900
Query: 633 IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEF 692
IRTPMN V+GM ++L+DT+L Q D+ +T H SG L+++IND+LD +KIESGRLE E
Sbjct: 901 IRTPMNAVIGMTELLLDTDLTPQQRDFVETVHTSGDALLTIINDILDFSKIESGRLELEE 960
Query: 693 VPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKF 752
PF L ++ V+ L + KA QK IEL + +VP +IGD R RQ++ NL+ N+IKF
Sbjct: 961 KPFDLKACVEQVIDLLAPKAAQKQIELIYLIHPQVPTQIIGDITRLRQVLMNLLNNAIKF 1020
Query: 753 TQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812
TQ +G + +SV+ +D K+L
Sbjct: 1021 TQ-QGEVVLSVYANHLETQNLDTSCKIL-------------------------------- 1047
Query: 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
+++DTG+GI E R+F PF QAD+S +R YGGTG+GL
Sbjct: 1048 -------------------FSIQDTGIGITPEKMARLFQPFAQADASMTRLYGGTGLGLV 1088
Query: 873 ISRCLVELMGGE--------IGFVSEPG-------------TGSTFSFTVTFTEGERNSL 911
IS+ L E+M G IG +PG G+TF FT+T T
Sbjct: 1089 ISQRLSEMMNGSLWVESRGCIGGNPDPGWQNSKPVLSTFSHHGATFYFTITSTV----LT 1144
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+ + V + G R L++DD +++ +Q +M ++A S A + L+
Sbjct: 1145 NAPSSEVTTSVVQLAGKRLLIVDDNPTNSKILSLQVQFWQMQTYIAESSAAALALLAQGM 1204
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
+ A++ + + D GL L ++QQ GG +NLP + L + E R
Sbjct: 1205 EFDI----AILDLPRPKID---GLELARAIRQQ--PGG----QNLPLVLLTSLGTPEICR 1251
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESS---KKLQQKRKKPSLGHLLKGK--QILV 1086
D G+V L KP++ S L ++ + + P HL + +ILV
Sbjct: 1252 D-FNDVGLVVCLNKPIKQSQLHYVLTHTCGNNLLPANISRAYISPFDIHLAEKMPLRILV 1310
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
+D++VN++VA L+K G V V GR + L +D MD+ MPEMDG + T
Sbjct: 1311 AEDSLVNQKVALLMLQKIGYQVDVVGDGREVIQALQ-HQPYDVVLMDIHMPEMDGLE-TS 1368
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
QI I++Q E+S + I+A+TA+ ++ E C+ GMDDY+SKP
Sbjct: 1369 QI------ISQQ---WEASTRPY---------IIAITANAMRGDREACLAAGMDDYISKP 1410
Query: 1207 FEDEQLYTAVAR 1218
+ +L A+ +
Sbjct: 1411 IQMAELVKALRK 1422
>gi|410629876|ref|ZP_11340571.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Glaciecola arctica BSs20135]
gi|410150499|dbj|GAC17438.1| two-component system, unclassified family, sensor histidine kinase
and response regulator [Glaciecola arctica BSs20135]
Length = 1065
Score = 276 bits (705), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 194/600 (32%), Positives = 300/600 (50%), Gaps = 96/600 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A+ AKS+FLA +SHEIRTPMNGV+GM +L+DT L+ Q ++A+ +S K L+
Sbjct: 540 KDSAEQANQAKSEFLANMSHEIRTPMNGVIGMTSLLLDTPLNPEQHNFAKIVKSSAKSLL 599
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+IND+LD +K+E+G LE E + F + +++ + +A++KG+EL + +
Sbjct: 600 SIINDILDFSKVEAGMLEMESIDFDMDLLMNEFGRSIAVRAHEKGLELICPANPVQHKCY 659
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
DPGR RQI+ NLVGN+IKFT+ +G + V VQ ++
Sbjct: 660 SADPGRIRQILNNLVGNAIKFTE-QGEVAVYY----------------------KVQQQT 696
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
D R K+L+ V DTG+G+ E Q +F
Sbjct: 697 D---------------------------------ARTKVLIEVTDTGIGLSAEQQAGLFE 723
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD ST+R +GGTG+GL+IS+ LVELMGGEIG S G GSTF FT+ E +
Sbjct: 724 RFSQADGSTTRKHGGTGLGLAISKQLVELMGGEIGIKSTHGKGSTFWFTLDLENSEHTA- 782
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
P + V++ RG + LV+DD + + L ++ + S + A L+
Sbjct: 783 -PTF-----SVADLRGQKILVVDDNLTNRTLLGHLLTNWQVEHTLVESAKQALECLTQAV 836
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
+ ++ +ID + D + G L +K + + + +L + D
Sbjct: 837 ADK--QAYSIAIIDMQMPDMD-GAQLGTAIKN-------DTTITNTHLVMLTSQGQRGDT 886
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK-QILVVDDN 1090
+LK+ G L KP+ ++L + + + + S H + K +ILVV+DN
Sbjct: 887 QKLKAVGFDAYLNKPVDQAILYNTLIQVAKITTNDSPILTEYSSRHTPQFKARILVVEDN 946
Query: 1091 MVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF--DACFMDLQMPEMDGFQATWQI 1148
++N+ VA+ L+++G G A+ L NF D FMD QMP MDGF+AT I
Sbjct: 947 VINQMVAQSMLEQYGIQSDVAANGEEALKAL---ENFPYDLVFMDCQMPVMDGFEATRSI 1003
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
R E+++ + +PI+AMTA+ +Q E+C+ GM+D++SKP E
Sbjct: 1004 RSPESKVRNKA-----------------IPIIAMTANTMQGDREKCIAAGMNDFISKPVE 1046
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 24/142 (16%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP----HNFDACFMDL 1134
L+G++ILVVDDN+ NR + L T V+ + A++ LT + +D+
Sbjct: 790 LRGQKILVVDDNLTNRTLLGHLLTNWQVEHTLVESAKQALECLTQAVADKQAYSIAIIDM 849
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP+MDG Q I++ + + + ++ +T+ + ++
Sbjct: 850 QMPDMDGAQLGTAIKN--------------------DTTITNTHLVMLTSQGQRGDTQKL 889
Query: 1195 MKCGMDDYVSKPFEDEQLYTAV 1216
G D Y++KP + LY +
Sbjct: 890 KAVGFDAYLNKPVDQAILYNTL 911
>gi|343516482|ref|ZP_08753517.1| PAS domain protein [Vibrio sp. N418]
gi|342796067|gb|EGU31762.1| PAS domain protein [Vibrio sp. N418]
Length = 1814
Score = 276 bits (705), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 199/670 (29%), Positives = 309/670 (46%), Gaps = 138/670 (20%)
Query: 574 INASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEI 633
IN + V L +F + + + E+M K +AE A AKS FLA +SHEI
Sbjct: 945 INLEVAVSEAGLTGEQLFTGIVRDATERKEAERELMLAKQKAEEATQAKSDFLANMSHEI 1004
Query: 634 RTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFV 693
RTPMN ++GM + M T+L+ Q DY S + L+ +IND+LD +KIE+G+L+ E
Sbjct: 1005 RTPMNAIIGMSYLAMQTDLNKKQSDYVNKIQTSAESLLGIINDILDFSKIEAGKLDLEQT 1064
Query: 694 PFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFT 753
F L +DN++ + S + +K +EL + + ++P +IGDP R QI+ NL N+IKFT
Sbjct: 1065 EFDLESTIDNLVQVVSQRTQEKDLELLVDLDPQLPTHLIGDPLRLGQILLNLANNAIKFT 1124
Query: 754 QDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENF 813
D+G I V L ++ DK+ S
Sbjct: 1125 -DQGEIIVKAEL---------------------IEQSDDKLEARFS-------------- 1148
Query: 814 KMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSI 873
V DTG+G+ E R+F F QAD+ST+R YGGTG+GL+I
Sbjct: 1149 --------------------VSDTGIGMTEEQMARLFQSFSQADASTTRKYGGTGLGLTI 1188
Query: 874 SRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVI 933
S+ L E+M G I SE G GSTF FT F +S P+ P+ + + L++
Sbjct: 1189 SKTLAEMMEGSIWVESESGQGSTFFFTAQFG---LSSEIPQQPVLAPE--SMKEVSILIV 1243
Query: 934 DDK--------------SIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQL 979
DD A+V + LE H N+ Q LSD +PQ+
Sbjct: 1244 DDSVAAREILFSLCQSLKFNADVASSGAEALEKIRHAENNEQHFDVILSDWK----MPQM 1299
Query: 980 ALVLIDKDV----WDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELK 1035
+ + + + KEI + H+++ ++ D+D++
Sbjct: 1300 DGIALGQQIELIHQSKEIATLPHFVM------------------------VTAYDKDDML 1335
Query: 1036 SD----GIVTLLTKPLRLSVLIGCFQ----EDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
++ IV +TKP+ S L+ ++ ++K + S+ + G +IL+V
Sbjct: 1336 ANRQGVNIVASMTKPVSSSTLLDTLSRVMTKEGITNKTNTSNKLDTSIAQGIAGARILLV 1395
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN +N+ +A L+ G VT + G+ AVD L +FD MD+QMP MDG+QAT
Sbjct: 1396 EDNAINQEIATELLQMVGMDVTTANNGQEAVD-LVGSQDFDLVLMDIQMPVMDGYQATQV 1454
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
IR N G + +PI+AMTA+ + E+C+ GM+D++ KP
Sbjct: 1455 IR---------------------NTGQYDDLPIIAMTANAMSGDKEKCLAAGMNDHLPKP 1493
Query: 1207 FEDEQLYTAV 1216
Q++ A+
Sbjct: 1494 INPNQVFQAL 1503
>gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 929
Score = 276 bits (705), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 223/668 (33%), Positives = 317/668 (47%), Gaps = 120/668 (17%)
Query: 569 VPWTAINASIGVVVITLLVGHIFH-----AAINRIAQVENDYHEMMELKARAEAADVAKS 623
+ + + +G ++ L++G AA+N Q+ EM K +AEA+ AKS
Sbjct: 226 ILYKNLQMGLGGAILLLVIGCGILLARQLAAVN--VQLMQSGEEMRIAKEQAEASSRAKS 283
Query: 624 QFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKI 683
+FLA +SHEIRTPMNG+LGM ++LMDTEL+ Q DY ++ S ++L+ +IND+LD +KI
Sbjct: 284 EFLANMSHEIRTPMNGILGMTELLMDTELNPQQFDYLRSVKVSAENLMDIINDILDFSKI 343
Query: 684 ESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIIT 743
E GRLE E +PF L +L L S +A QKG+EL V +P+
Sbjct: 344 EVGRLETEAIPFMLRSMLGQTLRTLSVRAAQKGLELVFQVDPDLPDT------------- 390
Query: 744 NLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPV 803
L+G+ + Q V ++LA + V D+ + L S Q + L G +
Sbjct: 391 -LIGDPGRLRQ------VLLNLAGNA---VKFTDQGEVELLVSKQQE-------LPGKEL 433
Query: 804 VDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRT 863
+ R++ V D G+GI E Q RIF PF QAD ST++
Sbjct: 434 LLRFE-------------------------VRDRGIGISPEHQQRIFAPFEQADLSTTKK 468
Query: 864 YGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVS 923
YGGTG+GL+IS LV+LMGGEIG S G GSTF FT+ R + + Q
Sbjct: 469 YGGTGLGLAISSRLVQLMGGEIGLESVAGQGSTFWFTL------RCQVQEQPQHEAQQTG 522
Query: 924 EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLA--L 981
G ALV+DD +I ++ L R M V A S + A S L S + L L
Sbjct: 523 TLSGYLALVVDDIAINRQLLERFLTRWGMDVLTAGSAEEAFSMLEYARSRRPVQLLLTDL 582
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVT 1041
+ D D W GLV ++ +R L K+ LL ++ D + +
Sbjct: 583 QMPDCDGW----GLV--EQIRNDQRYDEL-------KLVLLPSAGKRGDARRCRELKVNG 629
Query: 1042 LLTKPLRLSVLIGCF------QEDPESSKKLQQKRKKPSLGHLLKGKQ----ILVVDDNM 1091
LTKP+ S L +E P SS P H ++ Q IL+VDD
Sbjct: 630 YLTKPVIHSELYEALKAIIHGKEQPGSS---------PVTRHHVREAQGSCSILLVDDVE 680
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
+NR +A L+K G V G AVD FD FMD+QMP MDGF+AT +IR
Sbjct: 681 INRELARIILEKRGHRVVQAANGLEAVDA-ARKERFDLVFMDIQMPLMDGFEATNEIRSF 739
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
E + GL VP++AMTA +Q ++C+ GMD Y++KP +++
Sbjct: 740 EL-----------------SQGLQPVPVIAMTAYALQGDRDRCLAAGMDGYIAKPIKEDD 782
Query: 1212 LYTAVARF 1219
L + +
Sbjct: 783 LCRVIGQM 790
>gi|254415604|ref|ZP_05029363.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196177554|gb|EDX72559.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1156
Score = 275 bits (704), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 203/625 (32%), Positives = 313/625 (50%), Gaps = 100/625 (16%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
+E++E + A A KS+FLA +SHEIRTP+NGVLGM+++L+ T+L+ QL+Y +T +
Sbjct: 406 NELVEARDAALATARLKSKFLANMSHEIRTPINGVLGMMRLLLQTDLNPQQLNYTRTIES 465
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
K L+++IND+LD +K+E+G++ E + F L LD+V+ + + +A KG+ELAI V
Sbjct: 466 CAKHLLTVINDILDVSKLEAGKMLLEQIDFSLDSCLDSVIDVLAVQAETKGLELAILVES 525
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VP + DPGR RQI+ NLVGN+IKFT D G + V V ++
Sbjct: 526 NVPRQLQSDPGRLRQILLNLVGNAIKFT-DAGEVVVRVAVS------------------- 565
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
+H+ T+T+ Q + L +V DTG+GI
Sbjct: 566 --RHQP---------------------------TDTLSQ-SSVTLRFSVTDTGIGISAAD 595
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q ++F F Q ++ST+R YGGTG+GL I + LVEL+GG+IG S+ G GSTF FTV
Sbjct: 596 QSKLFQAFSQVEASTTRRYGGTGLGLVICQQLVELLGGKIGVESKVGQGSTFWFTVPV-- 653
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
+ L P Q VP R L+ LV + + R HL+ M + A
Sbjct: 654 -KTQPLPPA--QAVP--LALRQLKLLVTAKNATTRQTVRSHLEAWGMQIDEA-------- 700
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI----FL 1021
T STS + L + +D I L L + + + + R P + +
Sbjct: 701 ----TDSTSTMDALRNAVSRCHPYDVAI---LDLQLPGSQGESIVPMIRCNPSLASTKLI 753
Query: 1022 LATSISETDR-DELKSDGIVTLLTKPLRLSVLIGCFQE--DPESS-KKLQQKRKKPSLGH 1077
+ T++ + D EL+S I+ LTKP++ S L PE + Q +P+ +
Sbjct: 754 VITTMHQLDTVQELESMEILGYLTKPMKASQLWESLLAAVTPEVDLETWQTTIHQPTHLN 813
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
+IL+VDD+ +N+ V L+ G C G A+ KL ++D FMD QMP
Sbjct: 814 DSSHLKILLVDDHPINQTVIVNQLQMLGYQPECASNGSEALAKLQ-AQSYDIVFMDCQMP 872
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
+DG++AT ++R E H ++A+TA +++ E+C+
Sbjct: 873 VLDGYEATRELRRQEGSNR-------------------HTIVIALTASALESDREKCLAV 913
Query: 1198 GMDDYVSKPFEDEQLYTAVARFFMS 1222
GMDD++SKPF+ + L + R+ S
Sbjct: 914 GMDDFLSKPFDQDTLQAMIERWAKS 938
>gi|347757673|ref|YP_004865235.1| sensory box protein [Micavibrio aeruginosavorus ARL-13]
gi|347590191|gb|AEP09233.1| sensory box protein [Micavibrio aeruginosavorus ARL-13]
Length = 1341
Score = 275 bits (704), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 197/649 (30%), Positives = 308/649 (47%), Gaps = 111/649 (17%)
Query: 588 GHIFH--AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
GH+ A + ++E + + + A++A+ AKS FLA +SHEIRTPMNG++GM
Sbjct: 631 GHVIRIVGAHTDVTEIEQANRNLKKARDEADSANRAKSDFLANMSHEIRTPMNGIIGMTH 690
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
+L++T+LD+ Q YAQT S + L+ +IND+LD +KIE+G++E E +PF + ++V
Sbjct: 691 LLLETKLDSRQRHYAQTVGQSAESLLQIINDILDFSKIEAGKMELENIPFDFQLLCEDVS 750
Query: 706 SLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
+ +A +KGIE + P+ + GDP R RQI+ NL GN+IKFT D+G++ V V
Sbjct: 751 EMMFVRAQEKGIEFLLSWDPDCPQFLFGDPVRIRQILFNLCGNAIKFT-DEGYVLVKVKH 809
Query: 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQL 825
D++ V++ + + K V+N F D + T
Sbjct: 810 LGTRDGHTDLRISVVDTGIGIAKEKQALVFN---------------KFDQADGSTT---- 850
Query: 826 GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
R YGGTG+GL+IS+ L ELMGG I
Sbjct: 851 ------------------------------------RRYGGTGLGLTISKQLAELMGGHI 874
Query: 886 GFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEF--RGLRALVIDDKSIRAEVT 943
SEPG GSTFS +T + R PK P++ +F G+RAL+IDD + E+
Sbjct: 875 SLTSEPGVGSTFSVHLTLSVAPR----PKSYVRAPELEDFDGTGIRALIIDDNIMSCEIF 930
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
+L + M V ++ S + + +++D + + G+ L ++ Q
Sbjct: 931 DTYLSSIGMNVETESNPYNVLSKMERAVDEG--RPYSFLIVDYAMPGMD-GISLCSLIAQ 987
Query: 1004 QRRKGGLEISRNLPKIFLLATS-ISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPES 1062
++ G I ++ATS TD + ++ GI L+KP+R S LI ++
Sbjct: 988 NKKIQG--------AIAIMATSQPGRTDIERMQRAGIKGYLSKPVRPSELISVIATLWKA 1039
Query: 1063 SKKLQQ--------------KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIV 1108
K + R + K ++LVV+DN VN+ V L +G
Sbjct: 1040 RKTGEDMGLVTRFTLDEQWAGRIRGPDDLYFKDTRVLVVEDNQVNQEVMVAMLDHYGIRS 1099
Query: 1109 TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEM 1168
VD GR AV ++ +FD FMD QMP MDG++AT +R +
Sbjct: 1100 AVVDNGRDAV-RIMREQDFDLVFMDCQMPIMDGYEATRTVRKEK---------------- 1142
Query: 1169 FGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
G + I+AMTA+ ++ E+C+ GMDDY+SKP ++ L +A
Sbjct: 1143 ----GGQDIKIIAMTANAMKGDREKCIAAGMDDYLSKPVVEKDLEAILA 1187
Score = 56.6 bits (135), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 15/184 (8%)
Query: 319 NHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFER-PLTSGVAYALKVLHSEREQFE 377
+++ L L S F+ +VD++ F +T AF+R P + + +VL SER +FE
Sbjct: 228 DYMQELQALQSFFNA---SDSVDRREFEVFT-YNAFKRNPGILAMDWMPRVLDSERAEFE 283
Query: 378 KQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQ-ETVSHIVSIDMMSGKED 436
+++ E + P+ + +P +DEY P+ F + ++ + + D+ + +
Sbjct: 284 A-----LRQQEYPGFFIKAPVGPDAWERSPRRDEYYPIEFIEPDSFNRYIGYDLSANEGR 338
Query: 437 RENILRARASGKGVLTPPFKLL---KSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYL 493
+RAR SG V+T KLL +S+ G +L VY QR +A +G++
Sbjct: 339 YAAFIRARDSGNAVITSRIKLLPDEESDQYGFLLVLPVYERG-ALITNVAQRRDALMGFV 397
Query: 494 GASY 497
Y
Sbjct: 398 AGGY 401
>gi|350553739|ref|ZP_08922902.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349790034|gb|EGZ43960.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 918
Score = 275 bits (704), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 205/626 (32%), Positives = 304/626 (48%), Gaps = 107/626 (17%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
+L +AE A+ AKS+FLA +SHEIRTPMNGV+GM +L+DT LDA Q YA T S +
Sbjct: 373 DLTLQAERANAAKSEFLANMSHEIRTPMNGVIGMTTLLLDTALDATQRHYADTVKKSAES 432
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+ L+ND+LD +K+E+G+L+ E + + ++D V+S + +A +K +EL + D V
Sbjct: 433 LLGLLNDILDFSKVEAGKLDLEHLELDIATLVDEVISAQAVRAYEKNLELLCVLDDDVLS 492
Query: 730 VVI-GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788
+ + GDPGR RQI+ NLVGN+IKF++ R +V V+ ++LEK +
Sbjct: 493 LALSGDPGRLRQILNNLVGNAIKFSE---------------RGEVVVRVQLLEKRAATA- 536
Query: 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
+L V DTG+GI +
Sbjct: 537 ----------------------------------------RLRFEVCDTGIGIAADKVPL 556
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
+F F Q D+ST+R YGGTG+GL+I + LVELMGG IG S+ G GS F F+V T
Sbjct: 557 LFEKFSQVDASTTRRYGGTGLGLAICKQLVELMGGTIGVQSQEGQGSVFWFSVPLTL--- 613
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
++D + R LV+DD + + + L + M A A L
Sbjct: 614 -NIDVPRPHAAHATENLQQRRILVVDDNATQRTLLTQRLGQWGMRAAGAADGVEALRLLY 672
Query: 969 DTCSTSVLP-QLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
P Q L+ + V D E +G L + Q G L + +L + +
Sbjct: 673 QAHKEEHEPYQAVLINLQMPVMDGETLGRTLSADPQMQ---GLLRV--------ILPSVV 721
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGCFQE------------DPESSKKLQQKRKKPS 1074
D + G L KP+R + L+ Q+ P + + +Q +
Sbjct: 722 RAEDPQRYQQAGFHACLPKPIRQTALLHVLQQLFAPSFDQHRMITPHTVQPVQSSHAV-N 780
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
H +IL+V+DN+VN++VA G L+K G T V+ G+AA+D L+ ++D MD+
Sbjct: 781 FAH--AQVRILLVEDNVVNQQVALGMLRKLGLQATAVNHGQAALDHLSQA-DYDLILMDV 837
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP MDG AT +IR ASG++ +PI+AMTA + + E C
Sbjct: 838 QMPVMDGITATQRIR---------AASGDAFDP--------RIPIIAMTAHAMPSDKEAC 880
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ GM+DYVSKP QL T + R+
Sbjct: 881 LAAGMNDYVSKPLSLAQLTTVLTRWL 906
>gi|343511277|ref|ZP_08748451.1| PAS domain-containing protein [Vibrio scophthalmi LMG 19158]
gi|342798610|gb|EGU34209.1| PAS domain-containing protein [Vibrio scophthalmi LMG 19158]
Length = 1816
Score = 275 bits (704), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 195/655 (29%), Positives = 304/655 (46%), Gaps = 138/655 (21%)
Query: 589 HIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM 648
+F + + + E+M K +AE A AKS FLA +SHEIRTPMN ++GM + M
Sbjct: 960 QLFTGIVRDATERKEAERELMLAKQKAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLAM 1019
Query: 649 DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLF 708
T+L+ Q DY S + L+ +IND+LD +KIE+G+L+ E F L +DN++ +
Sbjct: 1020 QTDLNKKQADYVNKIQTSAESLLGIINDILDFSKIEAGKLDLEQTEFDLESTIDNLVQVV 1079
Query: 709 SSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD 768
S + +K +EL + + ++P +IGDP R QI+ NL N+IKFT D+G I V L
Sbjct: 1080 SQRTQEKDLELLVDLDPQLPTHLIGDPLRLGQILLNLANNAIKFT-DQGEIIVKAEL--- 1135
Query: 769 VRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRI 828
++ DK+ S
Sbjct: 1136 ------------------IEQSDDKLEARFS----------------------------- 1148
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
V DTG+G+ E R+F F QAD+ST+R YGGTG+GL+IS+ L E+M G I
Sbjct: 1149 -----VSDTGIGMTKEQMARLFQSFSQADASTTRKYGGTGLGLTISKTLAEMMEGSIWVE 1203
Query: 889 SEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDK------------ 936
SE G GSTF FT F +S P+ P+ + + L++DD
Sbjct: 1204 SESGQGSTFFFTAQFG---LSSEIPQQPVLAPE--SMKEVSVLIVDDSVAAREILFSLCQ 1258
Query: 937 --SIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV----WD 990
A+V + LE H N+ Q LSD +PQ+ + + + +
Sbjct: 1259 SLKFNADVASSGAEALEKIRHAENNEQHFDVILSDWK----MPQMDGIALGQQIELMHQS 1314
Query: 991 KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSD----GIVTLLTKP 1046
KEI + H+++ ++ D+D++ ++ IV +TKP
Sbjct: 1315 KEIATLPHFVM------------------------VTAYDKDDMLANRQGVNIVASMTKP 1350
Query: 1047 LRLSVLIGCFQ----EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALK 1102
+ S L+ ++ ++K + S+ + G +IL+V+DN +N+ +A L+
Sbjct: 1351 VSSSTLLDTLSRVMTKEGITNKTNTSNKLDTSIAQGIAGARILLVEDNAINQEIATELLQ 1410
Query: 1103 KHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162
G VT + G+ AVD L +FD MD+QMP MDG+QAT IR
Sbjct: 1411 MVGMDVTTANNGQEAVD-LVGSQDFDLVLMDIQMPVMDGYQATQAIR------------- 1456
Query: 1163 ESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
N G + +PI+AMTA+ + E+C+ GM+D++ KP Q++ A+
Sbjct: 1457 --------NTGQYDDLPIIAMTANAMSGDKEKCLAAGMNDHLPKPINPNQVFQAL 1503
>gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 1245
Score = 275 bits (704), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 204/624 (32%), Positives = 305/624 (48%), Gaps = 108/624 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + A+AAD AKS+FLA +SHEIRTPMN V+GM+ + + TE+ Q DY + A +
Sbjct: 576 ELEAARDSAQAADQAKSEFLANMSHEIRTPMNAVIGMIHLTLKTEMSPKQRDYLRKAGFA 635
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +I+D+LD +K+E+G+LE E F L +VLD V S+ KA++KG+E + ++
Sbjct: 636 ADSLLGIIDDILDFSKVEAGKLELEQHQFLLSEVLDTVTSIVGIKAHEKGLEFLLKIAPE 695
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP +IGDP R QI+ NL N++KFT +G I
Sbjct: 696 VPAQLIGDPLRLGQILINLCNNAVKFT-GQGEI--------------------------- 727
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
F +++ EN R+ L +V D G+G+ E
Sbjct: 728 --------------FVFIEQLDCREN-------------NRVMLRFSVRDNGIGMTPEQL 760
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
++FTPF QAD+S++R +GGTG+GL+IS+ LV LMGGEIG S P GS F FT F G
Sbjct: 761 DKLFTPFTQADASSTRRFGGTGLGLAISKQLVLLMGGEIGAESIPDKGSVFFFTACFGIG 820
Query: 907 ERNSLD-PKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ--LA 963
L PK +P S + ++ LV+DD + ++ L +A S Q L
Sbjct: 821 SSPILQGPK----LP--SALQRMKLLVLDDSARSRDIFEGLFYSLGCRAELAASAQEGLG 874
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
C S+ P L+L D + +Q RR L + PKI ++
Sbjct: 875 CLERSEK------PYDLLLLDDSLSGLDGFAVA-----RQVRRMSPLH---HQPKIIMIT 920
Query: 1024 TSISETDRDELKSDGIVTLLTKPLRLSVL----IGCFQED----PESSKKLQQKRKKPSL 1075
E ++ +G+ LT+P+ L L + F+ D P S + K
Sbjct: 921 GYGDEEAHKQVVEEGLDGCLTRPVTLRSLFDAVVAAFESDSRTEPAGSPVNETAGDKRRY 980
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
G L+G ++L+V+DN +N++VA L G VT D G AV+ L H FD MD+Q
Sbjct: 981 GQ-LRGMRVLLVEDNDMNQQVACELLTSAGIEVTVADNGHTAVE-LAAQHRFDTVLMDIQ 1038
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP MDG++A+ IR + +PI+AMTA + ++C+
Sbjct: 1039 MPVMDGYEASRLIR--------------------ADQACRDLPIIAMTAHAMPQDRQRCL 1078
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DYVSKP ++LY+ + R+
Sbjct: 1079 ESGMNDYVSKPINPQELYSTLERW 1102
>gi|157373431|ref|YP_001472031.1| histidine kinase [Shewanella sediminis HAW-EB3]
gi|157315805|gb|ABV34903.1| Histidine kinase [Shewanella sediminis HAW-EB3]
Length = 931
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 197/630 (31%), Positives = 308/630 (48%), Gaps = 112/630 (17%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
Q+E + + + + AEAA +KS+FLA +SHEIRTPMNGVLGML +L T LD +Q ++
Sbjct: 386 QLEMNNLALDDARETAEAAAQSKSEFLACMSHEIRTPMNGVLGMLTLLERTALDQSQRNH 445
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
TA S ++L+ LIND+LD +KIESG+ E V F L ++L+ + + +A +KGIEL
Sbjct: 446 LDTAQGSARNLLGLINDILDFSKIESGKFPIESVNFSLTNLLNETIRPLAIRAQEKGIEL 505
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
++D + GDP R Q++TNL+GN+IKFT+ KG I V V DD+ ++
Sbjct: 506 VSDITDITSQSFKGDPTRISQVLTNLIGNAIKFTE-KGSITVYVKQNDDIEPRL------ 558
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
NF + D TG+
Sbjct: 559 --------------------------------NFSVED-------------------TGI 567
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
G+ ++F PF QADSST+R +GGTG+GLSI++ L ELMGG I VS G GS FSF
Sbjct: 568 GLASNQLEKLFQPFTQADSSTTRHFGGTGLGLSIAKRLTELMGGSISVVSTEGKGSKFSF 627
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
V ++ L +P + RG RA +V L L ++ V +
Sbjct: 628 NVRVEIASKDDLYATDLNSLPILFFSRGTRA---------DQVLGKTLNLLNASLKVVKA 678
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK- 1018
+LA ++ + S + P+L ++ + E L L + +LP
Sbjct: 679 ARLA-NFKPASISDTYRPKLTIIHLPAGQEAIETEL------------AKLASNTDLPDT 725
Query: 1019 -IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQK-----RKK 1072
I L +I E+ + ++ I T L PL L L+ ++ +++ L Q+ ++
Sbjct: 726 PILLFIAAIDESIMTQYLNEQIFTYLCNPLHLEQLLIALKQIDQTAPHLVQRLAPQTQRD 785
Query: 1073 PSLGHLLKGK--QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV----DKLTPPHN 1126
L + + ++L+V+DN N+ VA+G + + G + G A+ D +T P+
Sbjct: 786 WDLKSYFEDRLPKLLLVEDNKTNQMVAQGIIAEFGLEIDIASDGEQAIEILKDSITSPYQ 845
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
FMD QMP +DG+Q T IR +G + + H+PI+AMTA+
Sbjct: 846 L--IFMDCQMPRLDGYQTTQMIR-----------AGYTGHQY------KHIPIIAMTANA 886
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
+ E+C++ GM+DY+SKP + + + A+
Sbjct: 887 MVGDRERCLQAGMNDYISKPLDPDDIKQAL 916
>gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
Length = 1564
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 213/657 (32%), Positives = 323/657 (49%), Gaps = 94/657 (14%)
Query: 574 INASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEI 633
I A G V I L GH+ + + + + + + A+AA+VAKS+FLAT+SHEI
Sbjct: 982 IEAVAGQVGIALAHGHLLEQEQQQRQTLTQNNTALKQARKDADAANVAKSEFLATMSHEI 1041
Query: 634 RTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFV 693
RTPMN V+GM +L++T LD Q D+ +T +SG L++LIND+LD +KIE+G+LE E
Sbjct: 1042 RTPMNAVIGMTGLLLNTTLDNQQRDFVETIRSSGDALLTLINDILDFSKIEAGKLEFEEQ 1101
Query: 694 PFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFT 753
PF L ++ L L + +A K +ELA P ++GD R RQI+ NL+ N +KFT
Sbjct: 1102 PFSLRACIEESLRLVAPRAIDKQLELAYLFDPSTPNHIVGDVTRLRQILVNLLTNGVKFT 1161
Query: 754 QDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENF 813
++G + + V D+ D + + + Q K NF
Sbjct: 1162 -EQGEVVIYVQ---------DITDTDITQPETTSQRK---------------------NF 1190
Query: 814 KMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSI 873
+ N + Q V D+G+GIP + R+F F Q D+ST++ YGGTG+GL+I
Sbjct: 1191 TDIQNQRRLIQF-------EVRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGLGLAI 1243
Query: 874 SRCLVELMGGEIGFVSEPGTGSTFSFTVTF---TEGERNSLDPKWQQYVPDVSEFRGLRA 930
R L ++MGG I S+ G GS+F FT+ EGE N+LD Q G +
Sbjct: 1244 CRSLSQMMGGRIWVESKAGVGSSFFFTIAVPVAPEGE-NTLDQSQQL-------LDGKQL 1295
Query: 931 LVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL-SDTCSTSVLPQLALVLIDKDVW 989
LV+DD + Q M + + A + L SD+ + L ++D +
Sbjct: 1296 LVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEALALLESDS-------KFDLAILDMQMP 1348
Query: 990 DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET--DRDELKSDGIVTLLTKPL 1047
+ + G+ L ++Q L+ ++LP + L + E + E++ I L KP+
Sbjct: 1349 EMD-GVELARHIRQ------LDQRKHLPLVMLSSLGQDEIIKHKQEIQFSAI---LNKPI 1398
Query: 1048 RLSVLIGCFQEDPESSKKLQQKRKKPS-LGHLLKGK---QILVVDDNMVNRRVAEGALKK 1103
+ S L E E +++Q K PS + +G QIL+ +D +VN++VA LK+
Sbjct: 1399 QQSYLYDALAEIFE-GQRVQVKPTVPSPVNTEEQGDPSLQILLAEDIVVNQKVALLILKQ 1457
Query: 1104 HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163
G + G ++ L ++D MD+QMPEMDG A RH I EQ E
Sbjct: 1458 LGYRADVANNGEEVLEALH-RQSYDVVLMDVQMPEMDGLTAA---RH----ITEQWQEEE 1509
Query: 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
I+A+TA+ +Q E CM GM DYVSKP ++L +A R+F
Sbjct: 1510 QPY------------IIALTANAMQGDREMCMAAGMHDYVSKPIRVDELKSAFERYF 1554
>gi|154252300|ref|YP_001413124.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
DS-1]
gi|154156250|gb|ABS63467.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
DS-1]
Length = 946
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 195/640 (30%), Positives = 311/640 (48%), Gaps = 120/640 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
IA++E E++ K +AEA + AKS FLA +SHEIRTPMNGVLGM ++L+ T L+A Q
Sbjct: 253 IAELEATKQELIAAKDQAEAGNRAKSDFLANMSHEIRTPMNGVLGMTELLLTTALNAEQR 312
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
+A+T SG+ L++++ND+LD +K+E+GRLE + + F L + +++ +SL +++A +K I
Sbjct: 313 KFAETVRESGEALLTIVNDILDVSKLEAGRLELDHIDFDLVNTVESAISLMAARAAEKQI 372
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKG-HIFVSVHLADDVRSKVDVK 776
+L Y+ + GDP R RQ++ NL+GN+IKFT+ G + VSV+ +D ++K
Sbjct: 373 DLGAYIEPAARGIYRGDPARLRQVLLNLIGNAIKFTEKGGVAVRVSVYRVEDPQTK---- 428
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
H +V++T
Sbjct: 429 ----------ASHLRFEVHDT--------------------------------------- 439
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
G+GIP + R+F F QADSS +R YGGTG+GL+I + +VELM G IG S G GST
Sbjct: 440 -GIGIPEDVCGRLFQKFSQADSSVTRRYGGTGLGLAICKQIVELMDGNIGVNSRVGAGST 498
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSE----FRGLRALVIDDKSIRAEVTRYHLQRLEM 952
F F ++ + ++PD+S L+ LV+DD + +V L +
Sbjct: 499 FWFQLSLV---------RSAAHLPDLSRLPVYLEKLKVLVVDDVPVNLDVLTSQLGTYGI 549
Query: 953 AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
V A A + L + W + ++ + G ++
Sbjct: 550 TVTRAEDGFAAQAEL------------------ERAWHAGHPYDIAFLDQMMPGISGEDL 591
Query: 1013 S---RNLP-----KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC----FQEDP 1060
+ RN P K+ L++++ S + ++D + + KPLR L+ C + P
Sbjct: 592 ASRIRNNPDLADMKLVLVSSAGSHASKLHEENDTLDARVEKPLRQHELLDCLMRVYSGAP 651
Query: 1061 ESSKKLQQKRKKPSLGHLLKGK--QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
R G + +IL+ +DN +N++VA L++ G VT + G AV
Sbjct: 652 LVDSSSAHNRDVLEDGAATSARTLRILLAEDNKINQKVALAMLEQLGHSVTIAENGLQAV 711
Query: 1119 DKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
D + H FD MD+QMPE+DG AT IR L + +P
Sbjct: 712 DAVRRGH-FDVVLMDIQMPELDGVGATRGIRALPAPKCD-------------------IP 751
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
I+AMTA+ ++ + + + CGMDDY+SKP + L+ +A+
Sbjct: 752 IIAMTANAMEGAERKYLDCGMDDYISKPVRRDILFAKLAK 791
>gi|225429946|ref|XP_002281288.1| PREDICTED: histidine kinase 3-like [Vitis vinifera]
Length = 337
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/303 (48%), Positives = 201/303 (66%), Gaps = 16/303 (5%)
Query: 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALV 982
SEF+G+ ALV+D +RA+V+R+H+QRL + V V + + S +S + + V
Sbjct: 38 SEFQGMAALVVDPNPVRAKVSRHHIQRLGIHVEVTSDLNQVFSGISSGNTA-----INRV 92
Query: 983 LIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-- 1040
L++ DVWDK+ L ++ K +K LE+ PK+FLLA SIS T R+ G+
Sbjct: 93 LVEHDVWDKDSNLSALFVNK--LKKLDLEVP---PKLFLLANSISST-RNSAAISGVYNS 146
Query: 1041 TLLTKPLRLSVLIGCFQED-PESSKKLQQKRKKPSLG--HLLKGKQILVVDDNMVNRRVA 1097
T++ KPLR +L Q +K + Q + PSL LL+G++ILVVDDN VN RVA
Sbjct: 147 TVIMKPLRAGMLAASLQRALGVGNKGVCQNGEHPSLSLRSLLRGRKILVVDDNNVNLRVA 206
Query: 1098 EGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE 1157
GALKK+GA + C D G++A+ L PPH+FDACFMD+QMPEMDGF+AT IR +E +N
Sbjct: 207 AGALKKYGADMVCADSGKSAIPLLKPPHDFDACFMDIQMPEMDGFEATGIIREMERNVNS 266
Query: 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
+I GE S E + N+ WH+PILAMTADVIQA++E+C++CGMD +VSKPFE EQLY V+
Sbjct: 267 RIQHGEVSVEAYANISNWHLPILAMTADVIQATHEECLRCGMDGHVSKPFEAEQLYREVS 326
Query: 1218 RFF 1220
RFF
Sbjct: 327 RFF 329
>gi|325106899|ref|YP_004267967.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
gi|324967167|gb|ADY57945.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
Length = 929
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 206/629 (32%), Positives = 311/629 (49%), Gaps = 93/629 (14%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
I + +N E+ K AE+A+ AKS FLA +SHEIRTPMN ++GM ++L+D+EL Q
Sbjct: 252 ITRQKNAEQELKAAKEAAESANRAKSDFLANMSHEIRTPMNAIIGMSELLLDSELQHQQD 311
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
Y +T +S + L+S+IN++LD +KIE+G LE + L D++ L +++A++KG+
Sbjct: 312 VYVRTVLDSAESLLSIINEILDFSKIEAGHLELSWERIDLRDLVVETLRSLAARAHRKGL 371
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
ELA V +P+VV+GDP R RQI+ NLVGN+IKFT+ G I V V
Sbjct: 372 ELAWRVDPSIPQVVMGDPVRIRQILMNLVGNAIKFTE-AGEIVVQV-------------- 416
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
K LE S +SV+ L V DT
Sbjct: 417 KSLEMSTDSVE-----------------------------------------LHFEVRDT 435
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI + +IF F QAD+ST+R +GGTG+GL+I+ L MGG I S G GS F
Sbjct: 436 GIGIQQDRLQKIFDAFEQADASTTRQFGGTGLGLAIASRLASAMGGMIWAESMLGQGSVF 495
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + T RN + +PD+ LV+DD + + L + V
Sbjct: 496 HFKIQLTSSSRNEILDSQVDVLPDLD---SRPVLVVDDNETNRLLLQDMLNSWGLEVTSM 552
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ A +YL + +VLP L++ D ++ + G L ++ R L
Sbjct: 553 SRAADALAYLEALPAGNVLP---LLVSDVNMPGMD-GFTLVETIRDHDRLHEL------- 601
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK----- 1072
+ LL + D G+ + L KP++ S L+ +++++ +
Sbjct: 602 CVILLTSGTRPGDLTRSSQLGVSSHLLKPIKQSELLEAIMVGFGQLQRMKEAFRPNVDAG 661
Query: 1073 -PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
P++ L IL+ +D N+ +A L+K G V + GR A +K +D
Sbjct: 662 IPAMPSL----TILLAEDGHANQCLATAVLQKWGHEVDVAENGRIAFEKYLTSR-YDLIL 716
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMPEMDG+QAT IR+ E A+ + A+ G H+PI+AMTA ++
Sbjct: 717 MDVQMPEMDGYQATQAIRNHE-------ATSKGEAKRGG-----HIPIIAMTARAMKGDR 764
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E+C+ GMD+YVSKP + LY A++RFF
Sbjct: 765 ERCLDAGMDEYVSKPIRRKALYEAMSRFF 793
>gi|357404372|ref|YP_004916296.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
gi|351717037|emb|CCE22702.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
Length = 1528
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 205/613 (33%), Positives = 306/613 (49%), Gaps = 118/613 (19%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E K AE A+ AKS FLA +SHEIRTPMN +LG+ Q++++T+L+A Q D+ Q H S
Sbjct: 791 LIEAKQSAETANRAKSAFLANMSHEIRTPMNAILGLTQLVLETDLNARQKDFLQKVHASS 850
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
K L+S++NDVLD +KIE+GRLE + V F + VL +V LF+++ +KG+EL +
Sbjct: 851 KALLSILNDVLDYSKIEAGRLEIDRVSFRVESVLTSVADLFAARIEEKGLELFFEIEALA 910
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
+IGDP R Q++ NLVGN+IKFT + +V +K + +E+S +S
Sbjct: 911 NRTLIGDPLRLTQVLNNLVGNAIKFTNE---------------GEVHIKVEAIEQSDDS- 954
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
+ L +V DTG+G+ E
Sbjct: 955 ----------------------------------------LLLQFSVRDTGIGLSQEKAE 974
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
+F PF QADSS +R +GGTG+GL+I +V LMGG IG G G+ F+FTV
Sbjct: 975 LLFQPFTQADSSITRQFGGTGLGLAICSKIVALMGGTIGAAGVEGKGAVFTFTV------ 1028
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
R ++ + Q + D+S R R LV+DD+S + L + ++S + A +
Sbjct: 1029 RVGIEAEAPQNL-DLSRIRAQRVLVVDDQSTSRLILECLLTEWGVICDTSDSGEDALRQI 1087
Query: 968 ----SDTCSTSVLPQLALVLIDKDVWDKE--IGLVLHYMLKQQRRKGGLEISRNLPKIFL 1021
C S VL+D W G + L+ RKG L K L
Sbjct: 1088 YRAEQKNCPFST------VLLD---WRMPGMSGAEVAERLENDCRKG-------LLKHPL 1131
Query: 1022 LATSISETDRDEL--KSDGI--VTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH 1077
I+ D+++L ++D I +LTKP+ SVL + + K + +LG
Sbjct: 1132 TVIMITAYDKEQLLAQADRIHFDKILTKPVTPSVLYETL-----AGHSVIPKPEDKALGA 1186
Query: 1078 L-LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
+ L G +ILVV+DN +N+ V L+ GA VT + GR A+DKL FD MDLQM
Sbjct: 1187 IRLDGVKILVVEDNALNQEVVVEILQNRGASVTVAENGRVALDKL-EQEIFDIVLMDLQM 1245
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQCM 1195
PEMDGF+AT +I+ + + +H +P++ M+A V+ +C
Sbjct: 1246 PEMDGFEATRRIKAIPD---------------------YHALPVVVMSAAVMPEERARCR 1284
Query: 1196 KCGMDDYVSKPFE 1208
G DD+V+KP +
Sbjct: 1285 LAGADDFVAKPVD 1297
>gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
Length = 1235
Score = 275 bits (703), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 208/657 (31%), Positives = 321/657 (48%), Gaps = 128/657 (19%)
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
+ IF N +V E++E + +AE+A AKS FLA +SHE+RTPMN ++G+ Q
Sbjct: 446 MATRIFDYNTNLEQKVSERTSELVEARKKAESASKAKSNFLAHMSHEVRTPMNAIIGLSQ 505
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
+++ T+L+ Q D+ + +S L++ +NDVLD +KIE+ +L ++ PF + DVL V
Sbjct: 506 LMLKTQLNKRQRDFMEKVLSSSDVLLNTLNDVLDYSKIEANKLTLDYTPFDIRDVLRRVT 565
Query: 706 SLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
++ + KA KG+EL + + +VP IGDP R QI+ NL N++KFT+ +G + + V
Sbjct: 566 NISAYKAQYKGVELLLDIDQKVPFQWIGDPIRLGQILINLASNAVKFTE-QGEVIIRV-- 622
Query: 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQL 825
K+LE QH
Sbjct: 623 ------------KLLE------QHNQQST------------------------------- 633
Query: 826 GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
L +V DTG+GI E +FTPFMQ DSS +R YGGTG+GL+ISR L ELMGG I
Sbjct: 634 ----LRFSVIDTGIGIEQERINLLFTPFMQMDSSITRKYGGTGLGLAISRQLTELMGGRI 689
Query: 886 GFVSEPGTGSTFSFT--VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
S+ GS F FT +T + E+ L +P + +G+RALV+DD ++ EV
Sbjct: 690 WVESQLNVGSQFHFTCKLTLNDSEKTPL-------MPFHNRLKGMRALVVDDNAMAREVL 742
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
L L + V L CS +V +D W+ G+
Sbjct: 743 ADILTSLGLEVTTVADGYAGIDELEKACSKQT--PYDVVFLD---WNIP-GI-------- 788
Query: 1004 QRRKGGLE----ISRNL----PKIFLLATSISETDRDELKSDG----IVTLLTKPLRLSV 1051
G+E I RN+ P L+ T+ D D+ +SD I +++KP+ S
Sbjct: 789 ----NGVETASKIERNVHITKPAAMLMVTAY---DVDKFESDAHNVNIKKIISKPVDASC 841
Query: 1052 ----LIGCFQEDPESSKKLQQKRKKPSLGHL----LKGKQILVVDDNMVNRRVAEGALKK 1103
L+ F ++ ++S+ QKR+ L L+ K++L+VDD+++NR VA L
Sbjct: 842 IHDNLVEIFFQE-KTSRTCAQKRELNLNNSLDLSALRDKKVLIVDDSILNREVASEFLLD 900
Query: 1104 HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163
G V+ + G+ A+D + H +D MD+QMP MDG AT Q+R +N +++Q+
Sbjct: 901 VGIQVSTANNGQQALDMINQYH-YDLVLMDVQMPVMDGLTATKQLR--KNPLHKQL---- 953
Query: 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
PI+AMTA + + GM+D+++KP + + LY V R+
Sbjct: 954 --------------PIIAMTAHASADDYRRSLDAGMNDHLNKPIDHQLLYLTVTRWI 996
>gi|428300671|ref|YP_007138977.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
gi|428237215|gb|AFZ03005.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
Length = 1595
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 201/657 (30%), Positives = 323/657 (49%), Gaps = 108/657 (16%)
Query: 573 AINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHE 632
A+ A +G I L H+ ++ + E+ K AEAA+ +KS FLAT+SHE
Sbjct: 894 AVAAQVG---IALAQAHLLERETSQRELLAQQNQELNIAKKDAEAANRSKSDFLATMSHE 950
Query: 633 IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEF 692
IRTPMN V+GM +L++T+L +Q D+ +T +SG L++LIND+LD +KIE+G+L+ E
Sbjct: 951 IRTPMNAVIGMTGLLLNTKLTPSQEDFVETIRSSGDSLLTLINDILDFSKIEAGKLDLEE 1010
Query: 693 VPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKF 752
PF L ++ L+L +++A +K +ELA + P +++GD R RQI+ NL+ N++KF
Sbjct: 1011 QPFELRSCVEEALNLVANRALEKKLELACLIDPTTPNIIVGDVTRLRQILVNLLSNAVKF 1070
Query: 753 TQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812
T + G + V V+ +S+NS SD+
Sbjct: 1071 TAN-GEVVVFVN----------------TRSVNSTNSNSDR------------------- 1094
Query: 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
L I+ V+DTG+GIP + R+F F Q D+ST+R YGGTG+GL+
Sbjct: 1095 -----------NLYEIEF--AVKDTGIGIPADRMNRLFQSFSQVDASTTRQYGGTGLGLA 1141
Query: 873 ISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALV 932
I + L E+MGG+I SE G GSTFSF + + E N +Q+ D +EF G R L+
Sbjct: 1142 ICKRLCEMMGGKIWVESEAGVGSTFSFNI-WAEISENQ---AFQEESAD-NEFLGKRVLI 1196
Query: 933 IDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQ---LALVLIDKDVW 989
+DD + ++ Q M C+ S + + + Q L ++D +
Sbjct: 1197 VDDNATNRQILTLQTQSWGM---------FNCAVESGSEALKLFDQGVSFDLAILDMQMP 1247
Query: 990 DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRL 1049
+ G+ L ++Q+ N+P + L + + E ++ + ++ KP++
Sbjct: 1248 EMN-GITLGEKIRQKPN------CENMPLVMLTSINAQEIS-TQINNVEFAAIINKPIQQ 1299
Query: 1050 S--------VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGAL 1101
+L G + +S+ LQ +++ S L+ IL+ +DN VN++VA L
Sbjct: 1300 RQLYRTLGHILGGNLIKVNQSTTHLQNDQEQLSQNLPLR---ILLAEDNTVNQKVALLTL 1356
Query: 1102 KKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161
++ G G + L +D MD+QMPEMDG AT + I EQ
Sbjct: 1357 ERIGYRADLAGNGLEVLQALQ-RQPYDLILMDVQMPEMDGLTATQR-------ICEQFPD 1408
Query: 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ I+AMTA+ +Q E C+K GMDDY++KP +L A+++
Sbjct: 1409 SQRPR------------IIAMTANAMQGDREICIKAGMDDYITKPIRVNELRNALSK 1453
>gi|407069151|ref|ZP_11099989.1| two-component sensor [Vibrio cyclitrophicus ZF14]
Length = 791
Score = 275 bits (702), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 207/661 (31%), Positives = 313/661 (47%), Gaps = 130/661 (19%)
Query: 591 FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
++ +I RI Q Y E+ + K AE A+ KS+FLA +SHEIRTPMNG++G+ +L +
Sbjct: 215 YNQSIERIRQ---QYQELEKAKNTAEIANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM 271
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
++ Q +Y + S L+ LIND+LD +KIE+GRLE + P + + +V S F
Sbjct: 272 DMSKEQKEYVDMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRV 331
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
KA QKG+ + + ++P +VIGD + RQ++ NLVGN+IKFT+ G++ +S+HL
Sbjct: 332 KAEQKGLRFQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTE-HGYVTLSIHL----- 385
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKL 830
++V+E EQ R++
Sbjct: 386 ------EQVIEP----------------------------------------EQKLRMRF 399
Query: 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
VT D+G+GI + Q +F F QAD ST+R YGGTG+GL+I +V LMG ++ S
Sbjct: 400 EVT--DSGIGIAEDKQKSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTSV 457
Query: 891 PGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE----FRGLRALVIDDKSIRAEVTRYH 946
G GSTF FT F DP DV E F + L++DD + +T
Sbjct: 458 EGKGSTFYFTADF--------DPCL-----DVDESNIDFNKVSVLLVDDSQLNMRITSTQ 504
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
LQ + + A +S++ S LP LVLIDK V G L L ++
Sbjct: 505 LQSFGVTSECCETAGQAIELVSESVVKS-LP-YDLVLIDK-VMPNVDGFQLARSLIER-- 559
Query: 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE-------- 1058
+ PK+ +++ + D K G V + +P + + L E
Sbjct: 560 -----FGKACPKLVMISADPRKQDEVRAKQVGFVAYIARPYQDNQLKWTLSEVLARAADT 614
Query: 1059 ----------------DPESSKK---LQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
+P S K + ++ +P L ++LVV+D+ VN++VA+
Sbjct: 615 EIFTYSNRGEVAFKDNEPVPSTKPEVVVKEDLQPEAAKALFSGKVLVVEDSRVNQQVAKM 674
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
LKK G V D G V+K + ++ FMD QMP +DGF+AT QIR LE
Sbjct: 675 MLKKLGFEVDIADNGEIGVEKF-KANEYEMIFMDCQMPVLDGFEATKQIRVLE------- 726
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E S++ H+PI+A+TA+V+Q C GMD+++ KP +L V F
Sbjct: 727 ---EDSSK--------HIPIVALTANVVQRDKHLCFDVGMDEFLPKPVNQGKLREIVEGF 775
Query: 1220 F 1220
Sbjct: 776 L 776
>gi|288573392|ref|ZP_06391749.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288569133|gb|EFC90690.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 1129
Score = 275 bits (702), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 202/616 (32%), Positives = 301/616 (48%), Gaps = 107/616 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + K AE A+ AKS FLA +SHEIRTPMN VLGM ++ ++T D Q +Y +T H +
Sbjct: 475 ELRKAKEEAERANRAKSAFLANMSHEIRTPMNAVLGMTELALETTYDEDQREYLETIHEA 534
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIESG +E + PF L +V S + +A+ KG+EL + + +
Sbjct: 535 SCSLMDIINDILDISKIESGHMEIDSHPFDLGEVAWKSASYLAKEAHGKGLELNVDIDEE 594
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+ E IGD R RQI+ NL+ N++KFT D+G I +SV K +EK+
Sbjct: 595 LAESYIGDSVRIRQIMVNLLSNAVKFT-DEGEILMSV--------------KAMEKT--- 636
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
K D V + +EDTG+G+ +
Sbjct: 637 --AKMDSVE------------------------------------IRIEDTGIGLSEKEI 658
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
RIF+PF+QAD ST++ YGGTG+GLSI + LVE+MGG++ S PG GS FSFT+ T G
Sbjct: 659 ARIFSPFIQADVSTTKRYGGTGLGLSICKKLVEIMGGKLEVQSAPGKGSVFSFTIPLTIG 718
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+RN D E R AL++DD + L M VH A S + A +
Sbjct: 719 DRNRQDLH--------PELRSRSALIVDDNETNRAILSRKLSAWGMEVHQAKSGEEALNI 770
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
L+ S ++++D + D + VL + ++ +P+ ++ +S+
Sbjct: 771 LTGKNRRSA----DIMILDCHMPDMDGPTVLERLNQEN----------AMPEAAIMFSSL 816
Query: 1027 SETDRDELKSD----GIVTLLTKPLRLSVLIGCFQED--PESSKKLQQKRKKPSLGHLLK 1080
D E+KS GI LTKP+ SVL + PE + Q+ L +
Sbjct: 817 ---DGPEVKSRCRDLGIRWFLTKPIPDSVLKKTLIKSITPEEAGSTPQELGDQDLFGV-- 871
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
GK +LVV+DN N R+ + + G V G A+ K+ D MD+QMP MD
Sbjct: 872 GKSVLVVEDNEFNARIMRRTMARRGFQVDLAINGTEALKKIDEARP-DLVLMDIQMPVMD 930
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G + T +IR E++ SG +P++A+TA + ++ G+D
Sbjct: 931 GKETTRKIRR------EELRSGRP-----------RLPVIALTAYAMAEEKSAILESGVD 973
Query: 1201 DYVSKPFEDEQLYTAV 1216
D V+KP E L+ AV
Sbjct: 974 DIVTKPVNREDLFRAV 989
>gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM
271]
gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM
271]
Length = 1040
Score = 275 bits (702), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 198/629 (31%), Positives = 306/629 (48%), Gaps = 100/629 (15%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
++EN + +L +A+ A AKS+FLA +SHEIRTPMNGV+GM +L++T+L Q Y
Sbjct: 494 KLENASRKAKKLAEQAQEASKAKSEFLANISHEIRTPMNGVIGMTGLLLETDLTPQQHRY 553
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
A T +S + L+ LIND+LD +KIE+G+L E + F L +++D+ + F+ +A QK +E
Sbjct: 554 AGTIASSAQSLLDLINDILDVSKIEAGKLTLEILDFDLQELMDDFAASFAIQAEQKNLEF 613
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+ +P + GDPGR RQI+ N+ GN++KFT KG I + V L D D+V
Sbjct: 614 LCSIEPGIPTRLTGDPGRLRQILMNIAGNAVKFTS-KGEIAIYVTL------DSDCDDQV 666
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
+ L + DTG+
Sbjct: 667 V-------------------------------------------------LRFCIRDTGI 677
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GI E +F F Q D+S +R YGGTG+GLSI++ LVELM G IG S GS F F
Sbjct: 678 GIAKEKIDTLFEKFTQIDASATRQYGGTGLGLSIAKDLVELMQGSIGVESTVNQGSLFWF 737
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
T +L Q + S F G +AL++DD + E+ L M +++
Sbjct: 738 TAKLNRQTHATLQA---QESKNRSLF-GQKALIVDDNATNREILSKRLLSWGMRPEESDN 793
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
Q A L +++ +A++ + D G++L +++ L++
Sbjct: 794 GQDALDMLIRASTSTDAFTIAVIDMQMPEMD---GVMLGKAIREHEALMSLQM------- 843
Query: 1020 FLLATSISETDRDEL-KSDGIVTLLTKPLRLSVLIGCF-----QEDPESSKKLQQKRKKP 1073
++ TS+ L + G L KP+++ L ++PE+ ++ QK+
Sbjct: 844 -IMMTSLGNNGESSLAEKAGFSAWLQKPVQIKKLKNALIALSATQEPEADEQPSQKKPNN 902
Query: 1074 SLGHLLKGK-QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL-TPPHNFDACF 1131
L + K +IL+V+DN+VN++VA LKK G V V G+ A+ L + P +D
Sbjct: 903 LLNRFAECKARILLVEDNIVNQQVAMLMLKKFGLHVDGVANGKEALSALMSLP--YDVVL 960
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP MDG +AT +IR+ G G +PI+AMTA Q+
Sbjct: 961 MDIQMPVMDGLEATRRIRN-------------------GECGTSAIPIIAMTAHAKQSDR 1001
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E C+ GM+DYVSKP + L + ++
Sbjct: 1002 ELCLATGMNDYVSKPVNQQALADTLEKWL 1030
>gi|343503080|ref|ZP_08740914.1| Two-component system sensor protein [Vibrio tubiashii ATCC 19109]
gi|418476779|ref|ZP_13045929.1| two-component system sensor protein [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|342812587|gb|EGU47583.1| Two-component system sensor protein [Vibrio tubiashii ATCC 19109]
gi|384575643|gb|EIF06080.1| two-component system sensor protein [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 1023
Score = 275 bits (702), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 206/621 (33%), Positives = 305/621 (49%), Gaps = 102/621 (16%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+M +A+AE A KS FLA +SHEIRTPMN ++GM + + T+L Q DY HN
Sbjct: 259 EELMVARAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLSPKQHDYLSKIHN 318
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+ +IND+LD +KIE+G+L E + F+L DVL NV + KA +KG+EL VS
Sbjct: 319 SASLLLGIINDILDFSKIEAGKLTIEEIDFYLDDVLHNVSMVTGQKAFEKGLELLFKVSK 378
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VP+V+ GDP R QII NLV N++KFT+ +G I V+V+ VR + D
Sbjct: 379 DVPKVIKGDPLRLGQIIINLVNNAVKFTE-QGEIAVTVN----VRPESD----------- 422
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
G I L + V+DTG+G+ E
Sbjct: 423 ----------------------------------------GEIYLCLDVQDTGIGMSKEQ 442
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT--F 903
++F F QAD ST+R YGGTG+GLSI R LVELMGGEI S GS FSF V F
Sbjct: 443 ADKLFNAFTQADGSTTRRYGGTGLGLSICRRLVELMGGEIRVDSTLNQGSCFSFCVLVGF 502
Query: 904 TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
E ++ VPD + ++AL +DD + L L + +S + A
Sbjct: 503 EEANQDKC-----LVVPDT--LQSVKALAVDDNEHALLIMEDLLDVLPQKPSLVDSGEKA 555
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
L S P LV +D + + G+ +++QQ + ++ PK+ ++
Sbjct: 556 LQELK-RASEQGTP-YNLVFMDWKMPEMS-GIEATKLIRQQIK------PQHQPKMVIVT 606
Query: 1024 TSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE-----DPESSKKLQQKRKKPSLGHL 1078
+ +EL I L KP+ S L + P S+ + + K +K G +
Sbjct: 607 AYDKDDISNELDDLDIAGFLAKPIGQSFLFDLLMDLFAPNGPLSNSRHKSKAEKD--GSM 664
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPH-NFDACFMDLQMP 1137
L+V+DN +N+++A ++ VT + G A+ L H +FD FMDLQMP
Sbjct: 665 FNCLNALLVEDNEINQQIAVELMEDKAMHVTVANNGLEALQILEKNHEDFDIIFMDLQMP 724
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG++A+ +IR N++ + I P++AMTA + E+C+
Sbjct: 725 VMDGYEASRRIR--SNKLYDAI------------------PLVAMTAHAMIEERERCLSL 764
Query: 1198 GMDDYVSKPFEDEQLYTAVAR 1218
GM+++VSKP + + LY+ + R
Sbjct: 765 GMNEHVSKPIDPDALYSTIKR 785
>gi|298530006|ref|ZP_07017408.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509380|gb|EFI33284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1562
Score = 275 bits (702), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 202/627 (32%), Positives = 317/627 (50%), Gaps = 73/627 (11%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
H++ + AEAA+ AKS FLA +SHEIRTPMN V+G+ Q+L+ T LD Q DY N
Sbjct: 788 HQVQLAREEAEAANRAKSDFLANMSHEIRTPMNAVIGLSQLLLQTSLDDRQRDYLNKISN 847
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S + L+ +IND+LD +KIE+G+LE + F + ++LD + +LF S A KG+E+ +S
Sbjct: 848 SSRMLLGIINDILDYSKIEAGKLELDMHTFRMDELLDQMKTLFGSTAEDKGLEIIFNIST 907
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLE-KSL 784
VP ++ GD R Q+ TNL+GN++KFT+ KGH+ ++VH ++ + +V+D+ E +S
Sbjct: 908 DVPRILKGDSLRLGQVFTNLLGNAVKFTE-KGHVELAVHKSEVRSQESEVRDQGTEVRSQ 966
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
+ Q D+ G DR D+ + + ++LL ++DTG+G+ E
Sbjct: 967 DLGQGTGDRG----QGLEAADR----------DSESKI-----VRLLFEIKDTGIGMDDE 1007
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
R+F PF QAD+ST+R YGGTG+GL IS LV+ MGG + S PG GS F F +
Sbjct: 1008 QVQRLFQPFSQADTSTTRKYGGTGLGLVISHKLVQRMGGTLQVDSTPGQGSRFYFEIDL- 1066
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
+ P+ + + F R LV+DD +V R L+ V A+ + A
Sbjct: 1067 -----PMAPE-SETTQECIGFDSHRVLVVDDHEAARQVLRNILESCMFQVKEAHDGRSAV 1120
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
+ + V +D + + GL + EI R + FL
Sbjct: 1121 DAV--VAADRAGEPYEFVFMDWKMPGELDGL-----------QAAREIDRLYAEGFLKGN 1167
Query: 1025 S-----ISETDRDELKSDGIV---TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+S R EL D + L+KP+ S + E + + ++ ++
Sbjct: 1168 RPPFVVVSAYQRSELPEDSVECFNCFLSKPVTASSIFNAIAEATGKAPSYTRDDEQFTIP 1227
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
+G IL+ +DN +N+ VA L+K GA ++ G AV+ + +FD MDLQM
Sbjct: 1228 S-FQGYSILLAEDNALNQEVAWQMLEKTGAALSLAANGAEAVE-MVEAGSFDLVLMDLQM 1285
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P MDGF+AT +I E F + +P++A++A V++ + +
Sbjct: 1286 PVMDGFEATRKI-----------------LERFPD-----LPVIALSAAVMEEDRNKSRQ 1323
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFFMSG 1223
GM D++SKP E LY +AR+ +G
Sbjct: 1324 AGMRDHLSKPIESTSLYRTLARWLQAG 1350
>gi|350551561|ref|ZP_08920775.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349796928|gb|EGZ50709.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1212
Score = 275 bits (702), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 209/632 (33%), Positives = 306/632 (48%), Gaps = 109/632 (17%)
Query: 606 HEMME----LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQ 661
HEMME L A+ A+ AKS+FLA +SHEIRTPMNGV+GM +LMDTEL A Q YA+
Sbjct: 447 HEMMERATNLAIDADVANRAKSEFLANMSHEIRTPMNGVIGMTGLLMDTELTAQQRHYAE 506
Query: 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
+ +S + L+SLIND+LD +KIE+G+L+ E + F+L ++LD + + +A+QKG+E
Sbjct: 507 SVLSSAESLLSLINDILDFSKIEAGKLDLEQIDFNLLNLLDEFATTLAWRAHQKGLEFIC 566
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLE 781
V P + GDPGR RQI+ NL N++KFT G + V V
Sbjct: 567 AVEPDTPVHLRGDPGRLRQILNNLGSNAVKFTH-SGEVVVRV------------------ 607
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
+ L+S Q + + L + DTG+GI
Sbjct: 608 RCLHSAQDQ-------------------------------------VVLQCAITDTGIGI 630
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
+ +F F Q D+ST+R YGGTG+GL+I + L LM GEIG S+ G GSTF FTV
Sbjct: 631 AQQDLALLFERFAQLDASTTRQYGGTGLGLAICKRLTSLMHGEIGVESKAGQGSTFWFTV 690
Query: 902 TFTEGERNSLDPKWQQYVPDV---SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
T L P +PD+ ++ +G+R LV+DD E+ L M A
Sbjct: 691 T--------LLPSQPSAIPDLPVHTDLQGVRILVVDDHPTNCEILMALLHSWGMRPCEAR 742
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
A L + +T Q+AL+ + + D E L M++ L +
Sbjct: 743 DGMQALVMLREAATTPDPFQVALIDLAMPIMDGE---QLGQMIQSDELLAAL-------R 792
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRL----SVLIGCFQEDPESSKKL---QQKRK 1071
++ + D + G L KP+R +VL E ++ + R+
Sbjct: 793 CVIMPSLTVPGDLKRYAASGFHAYLPKPVRQQDLHNVLCNVLDEHTRQAETMVTRHSSRE 852
Query: 1072 KPSLGHLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
+ L + +IL+V+D+ VN+ VA GAL++ G + G A+ L +D
Sbjct: 853 RMYAEQPLFAQWQARILLVEDDPVNQEVALGALQRLGLSADLAENGEQALQALAMA-TYD 911
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
FMD+QMP +DGF AT ++R S A NV VPI+AMTA+ +Q
Sbjct: 912 LVFMDVQMPVLDGFAATRKLR--------------SQARSALNV---QVPIIAMTANAMQ 954
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E+C+ CGM+DY+ KP + L A+ R+
Sbjct: 955 GDREKCLACGMNDYLPKPLSRDALEAAIKRWL 986
>gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
Length = 833
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 209/646 (32%), Positives = 301/646 (46%), Gaps = 108/646 (16%)
Query: 596 NRIAQVENDYHEMMELKAR----------AEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
R A+VE Y ++ E K R AEAA AK FLA +SHEIRTPMNG++GM
Sbjct: 139 GRWARVEGTYRDVTERKLREIELLQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTD 198
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
+L+D+ + Q +Y QT +S + L+++IND+LD ++IE+GRL E + F LH V+
Sbjct: 199 LLLDSTIAGEQREYLQTVKSSAEALLTIINDILDFSRIEAGRLSVEQIDFSLHSVVSETC 258
Query: 706 SLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
+ +A+QKG+EL V+ VP V+ GDP R RQI+ NL+GN+IKFT+
Sbjct: 259 RALALRASQKGLELYYDVAPDVPSVLRGDPTRLRQILVNLIGNAIKFTE----------- 307
Query: 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQL 825
+V+V+ + ++++ +
Sbjct: 308 ----HGEVEVRVRCVQRNGGAAS------------------------------------- 326
Query: 826 GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
I+ LV DTG GI + IF F QAD+ST+R YGGTG+GL+I R L ELMGG I
Sbjct: 327 --IEFLV--RDTGCGIAPDKLEAIFGAFSQADNSTTRKYGGTGLGLAICRQLTELMGGRI 382
Query: 886 GFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRY 945
G S PG GS F T+ R DP + V G R LV + A+
Sbjct: 383 GVDSVPGAGSRFEVTLPL----RAVADPTPLR----VGALAGTRVLVASANAAFADFLCA 434
Query: 946 HLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005
LQ + A S L+ S A +L+D D+ E G + L Q+
Sbjct: 435 TLQEAALRAEAACSGVAVEQALARAADGS--DPFAFLLMDADL--PEPG---GFALAQRF 487
Query: 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ-------- 1057
R +P ++A+ D + G+ L KP L+ +
Sbjct: 488 AAAWPRPDRIIP---MMASHSQRNDALRCEELGLGYRLAKPFSAEDLLAVLRMAQGGERE 544
Query: 1058 --EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
E P + R + + ++LVV+DN VN+ VA+ L+ G VT + G
Sbjct: 545 AAEPPPFELAPVELRSTVGMEPPARVLEVLVVEDNPVNQTVAKRMLEHVGHSVTVANNGE 604
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
A++ + H FD MD+QMP M G +AT IR E + +A G W
Sbjct: 605 EALEAIDNRH-FDVVLMDVQMPVMGGIEATQAIRAREARRSWVLA------------GDW 651
Query: 1176 H-VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
VPI+AMTA ++ E+C++ GMDDYV+KP E L+ A+ R
Sbjct: 652 KPVPIIAMTAHAMEGDRERCLQAGMDDYVAKPVRPEALFAAIERVL 697
>gi|406833703|ref|ZP_11093297.1| multi-sensor hybrid histidine kinase [Schlesneria paludicola DSM
18645]
Length = 1283
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 189/619 (30%), Positives = 296/619 (47%), Gaps = 105/619 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K A+AA++AKS FLA +SHEIRTP+NGV+GM ++L+ TELD+ Q + + SG+ L+
Sbjct: 588 KEAADAANLAKSSFLARMSHEIRTPLNGVIGMTELLLTTELDSRQHQFVKACQTSGRALL 647
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+L+ND+LD +KIE+G+LE + F L ++ + +A++KG+E + ++
Sbjct: 648 TLVNDILDLSKIEAGKLEMDVHDFDLEQLVHETTEMLWLRAHEKGLEFICDFDPQARQIY 707
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GD R QI+ NL+ N++KFT+ G + +++
Sbjct: 708 SGDGNRLGQILINLLNNAVKFTE-HGEVILNI--------------------------VC 740
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
D++ N ++ L V DTG+GIP + R+F
Sbjct: 741 DRIENEIA-----------------------------TLRFIVRDTGIGIPQDRANRLFQ 771
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
PF Q DSST+R YGGTG+GL+I + LVE+MGG+IG S G G+ F FTV F E L
Sbjct: 772 PFSQVDSSTTRKYGGTGLGLAICKHLVEMMGGQIGVESRVGAGTMFWFTVNFPVREHCEL 831
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+ D G R L++DD + H +R M A +++ A +
Sbjct: 832 YSE-----RDRRALEGRRVLIVDDNETNLLIMDEHTRRWGMQSATAATVEDALRLFDEAR 886
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN----LPKIFLLATSIS 1027
+ + LV+ D D+ +R L +S +P +L + +S
Sbjct: 887 ESDA--RFDLVISDYDM--------------PERNGSDLALSLGTRGVMPPFIMLGSGLS 930
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVLI----GCFQED--PESSKKLQQKRKKPSLGHLLKG 1081
+ L++ GI LTKP+ + L G Q++ S ++ + K S G
Sbjct: 931 NESAESLQAMGICQNLTKPVLSTQLYAAIQGVLQQNRLNSSGPRMTMRHTKVSSSPGEHG 990
Query: 1082 K-QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
++LV +DN +NR L + G V G A+ + H F MD QMP++D
Sbjct: 991 DIEVLVAEDNAINRLYVTTLLAEFGCKFRTVTNGLEAIQAIR-EHQFSIVLMDCQMPQLD 1049
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
GF+AT IR LE+E +I HVPI+A+TA+ ++ ++C+ GMD
Sbjct: 1050 GFEATRCIRTLESE--HRIEG--------------HVPIIALTANAVKGDADRCLAAGMD 1093
Query: 1201 DYVSKPFEDEQLYTAVARF 1219
Y+SKPFE LY + ++
Sbjct: 1094 HYLSKPFEPRSLYDVILKY 1112
>gi|33415350|gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium]
Length = 1248
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 208/620 (33%), Positives = 299/620 (48%), Gaps = 88/620 (14%)
Query: 598 IAQVENDYHEMMEL-KAR--AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA 654
++ V +++ + +EL +AR AEAA AKSQF+A +SHEIRTPMNG+LGM ++L+ T L+
Sbjct: 652 VSDVTDEHGQALELQRARDLAEAASQAKSQFMANMSHEIRTPMNGILGMTELLLGTPLND 711
Query: 655 AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQ 714
Q +AQ + SG+ L+ +IND+LD AKIE+GRLE F L ++++ L L + +A++
Sbjct: 712 KQRRFAQAVYRSGESLLEIINDILDFAKIEAGRLELATCDFVLRTLVEDTLELMAPRAHE 771
Query: 715 KGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVD 774
KG+EL+ +P V+ GDP R RQI+TNLV N+IKFT+ G I V + A
Sbjct: 772 KGLELSFREQPGLPSVIHGDPLRLRQILTNLVANAIKFTE-HGEIVVDIRRA-------- 822
Query: 775 VKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
+ G + + S E TME L V
Sbjct: 823 -----------------------IGGAVELPKPGSLE---------TME------LEFMV 844
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
DTG+GIP E R+F+ F+QA+ +R YGGTG+GL+IS+ LVELMGG+I S PG G
Sbjct: 845 RDTGIGIPAEVVPRLFSAFVQANGGMARRYGGTGLGLAISKQLVELMGGQIEVNSAPGVG 904
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
S F F V G + ++ PD+ F LV+DD V L M V
Sbjct: 905 SEFLFRVPVCIGTTQADMAMLEE--PDMPSF---NVLVVDDNDTNRTVIENMLTAWGMHV 959
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
A + A + L S LALV ++ D G+ L ++ R
Sbjct: 960 VQAIDGREALNVLMAHPSQDAPFDLALVDMNMPNLD---GMGLAEAVRTSGRY------- 1009
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLI-GCFQEDPESSKKLQQKRKKP 1073
L K+ LL++ S D + G + KPLR + L E Q+ R+
Sbjct: 1010 PLLKMILLSSVSSPDDVRRAQDVGFQRFVAKPLRKAELRQAILGISAERGDNAQEARR-- 1067
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
K +LV++DN VN+ V LK+ G V + +L FD MD
Sbjct: 1068 ------INKAVLVIEDNTVNQEVCSQMLKRLGCEVRVASSALEGLRRLG-EQRFDLILMD 1120
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP MDG +A R N F + P++A+TA+ ++ E+
Sbjct: 1121 IQMPGMDGVEALGWFRRGSN-------------NRFSFITPSDTPVIAVTANALEGDEER 1167
Query: 1194 CMKCGMDDYVSKPFEDEQLY 1213
+ G DDY+SKPF QL+
Sbjct: 1168 FLGLGFDDYLSKPFRQSQLH 1187
>gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
Length = 1765
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 192/627 (30%), Positives = 310/627 (49%), Gaps = 119/627 (18%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
+ + K A+AA+ AKS FLA +SHEIRTPMN ++GM Q+ + TELDA Q +Y Q +
Sbjct: 1023 LKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDAKQQNYIQKIDRAS 1082
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
K L+ +IND+LD +KIE+G+L+ E V F L +L+++ +FS KA+ K +EL V+ +
Sbjct: 1083 KSLLGIINDILDFSKIEAGKLDIESVDFQLDTLLEDLSDMFSVKASDKRLELLFAVAPNI 1142
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P +L+G+ ++ +Q V ++L ++ + + +L S++ +
Sbjct: 1143 PR--------------HLLGDPLRLSQ------VLINLMNNAIKFTEQGEVLL--SISQL 1180
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
+ D I L +V D G+G+ E +
Sbjct: 1181 ERVEDD----------------------------------IVLRFSVRDNGIGLTEEQRN 1206
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R+F F QAD+ST+R YGGTG+GL+IS+ LVELMGGEIG S+ G GSTF F+V +
Sbjct: 1207 RLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGEIGVESQFGNGSTFFFSVRLKVAD 1266
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
L K E G+R LV DD + ++ R L+ + V S A
Sbjct: 1267 NKLLKVK--------HEIEGMRILVADDNATARDILRTTLESMGFVVDAVKSGSDAI--- 1315
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL-------PKIF 1020
+ C + P + LID W Q GLE + + PK+
Sbjct: 1316 -ERCQHTHYP---VALID---W-------------QMPEMNGLEAAEVIFAEQETPPKVL 1355
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH--- 1077
+++ + ++++ GI +TKP+ S L+ + + +R+ +
Sbjct: 1356 IVSAHANAEFLEQIERSGIAGYITKPISASRLLDGIMSSLGKNGTMAVRRQGADISQELL 1415
Query: 1078 -LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
L+GK+IL+V+DN +N+ VA L++ G +++ D G+ A++KL +FD MD QM
Sbjct: 1416 GQLQGKRILLVEDNDMNQEVATEFLEQVGVVLSIADNGQIALEKLA-MQSFDLVLMDCQM 1474
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P MDG+QAT ++R L GL ++P++AMTA+ + E C+
Sbjct: 1475 PVMDGYQATRELRKLP--------------------GLANLPVIAMTANAMAGDREMCLD 1514
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFFMSG 1223
GM+D+++KP E LY+ + ++ G
Sbjct: 1515 AGMNDHIAKPIEVSLLYSRLLQYLGDG 1541
>gi|261417268|ref|YP_003250951.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385789187|ref|YP_005820310.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373724|gb|ACX76469.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327259|gb|ADL26460.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 1329
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 195/619 (31%), Positives = 297/619 (47%), Gaps = 94/619 (15%)
Query: 604 DYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTA 663
D E++ + AE A AKS+FLA +SHEIRTPMN ++GM ++ +T+LD QL + +
Sbjct: 567 DISEVVAAREIAEHATQAKSEFLANMSHEIRTPMNAIIGMAHLIQETKLDERQLGFIERI 626
Query: 664 HNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYV 723
++ L+ +IN++LD +KIE+ + + E L D++ V +L + + IEL + +
Sbjct: 627 SHAATSLLGIINNILDFSKIEANKQDLEITQLVLQDIIGEVAALAEVRIAGRPIELIVDI 686
Query: 724 SDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKS 783
+PEV++GDP R QI TNL+ N+ KFT + G I
Sbjct: 687 DPEIPEVLMGDPLRLSQIFTNLINNATKFT-ESGSI------------------------ 721
Query: 784 LNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPL 843
++Q K ++V IKL +V DTG+G+
Sbjct: 722 --TLQIKQEQVIG-----------------------------NNIKLSFSVIDTGIGMTT 750
Query: 844 EAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903
+ +F F QAD S +R YGGTG+GL IS+ LVELMGGE+ SE G GS F FT+T
Sbjct: 751 DQLHHLFNAFTQADGSITRKYGGTGLGLVISKSLVELMGGELQVESEYGKGSKFFFTITL 810
Query: 904 TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
++++ PKW+ VS FR L++DD V R++L +L V A S+ A
Sbjct: 811 AMAPQSTV-PKWKS----VSTFRNKNVLLVDDCERLRSVLRHYLTKLRCVVEEAASVDEA 865
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS-RNLPKIFLL 1022
+ P D + D ++ L+ + Q GL + R +PKI +
Sbjct: 866 LDLIQAHEEAGETP------YDLFIVDYQMPLMNGFDFVQ-----GLPANMRKIPKILMH 914
Query: 1023 ATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-LKG 1081
E + G + + KPL++S L+ QE + K QK KP + K
Sbjct: 915 PIHFDEHNYHLATEIGFNSCVAKPLQISSLLSAMQEAVD-EKLTYQKAPKPEKNKIFFKE 973
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+IL+V+DN +N+ +A L G G+ A++ L + FD MD+QMP M+G
Sbjct: 974 AKILLVEDNEMNQELAVSLLNSVGLATMVAPNGKKALE-LLKINAFDLVLMDIQMPVMNG 1032
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
AT IR+ S E F N VPI+AM+A Q + C+K GM+
Sbjct: 1033 LDATRAIRN-------------RSDEYFKN-----VPIIAMSAKAFQKDRDDCLKAGMNS 1074
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
Y++KP + LY +A++
Sbjct: 1075 YIAKPIDPMMLYAELAKYL 1093
>gi|350551908|ref|ZP_08921118.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349795838|gb|EGZ49631.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1531
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 201/620 (32%), Positives = 301/620 (48%), Gaps = 103/620 (16%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+A+ A AKS+FLA +SHEIRTPMNGV+GM +L+DTEL+ Q YA T S + L++L
Sbjct: 867 KAQQASQAKSEFLANMSHEIRTPMNGVIGMTGLLLDTELNGEQRHYANTVKASAEALLAL 926
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IND+LD +KIE+G+L+ E + F L LD+ + + KA +KG+E VP ++ G
Sbjct: 927 INDILDFSKIEAGKLDLETLDFDLRTTLDDFAMMMAFKAEEKGLEFICAADVDVPVLLCG 986
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
DPGR RQI+TNLV N+IKFT +G + V V ++ V + + + K D+
Sbjct: 987 DPGRLRQILTNLVSNAIKFTH-QGEVAVRVSCVHTDAQTAHLRFSVRDTGIGIPKDKMDR 1045
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
++ ++F +D + T E
Sbjct: 1046 LF---------------QSFSQVDASITRE------------------------------ 1060
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--TEGERNSL 911
+GGTG+GL+ISR L LMGGEIG S G GSTF FTV EG+ +
Sbjct: 1061 ----------FGGTGLGLAISRQLAILMGGEIGVDSVQGEGSTFWFTVKLGCQEGDAQA- 1109
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+ ++ G+RAL++DD + E+ L+ +M A A + L
Sbjct: 1110 -----ESTLLIASLHGVRALIVDDNATNREILEQRLKHWQMRTSSACDGPQALALLYQGL 1164
Query: 972 STSVLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
S QLA++ + D E +G V+ R L+ +R ++ TS+ +
Sbjct: 1165 SEQDPYQLAILDMCMPGMDGETLGRVI-------RADTRLQETR-----LVMMTSVGQRG 1212
Query: 1031 RDE-LKSDGIVTLLTKPLRLSVLIGCF-------QEDPESSKKLQQKRKKPSLGHLLKGK 1082
+ + L+ G L+KPL+ L C Q P ++ L + K K
Sbjct: 1213 QGKRLEEIGFSGYLSKPLQHLELFDCLSLALAREQHAPLITQHLTHELHKSQAAEYFKDS 1272
Query: 1083 Q--ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+ IL+ +DN++N++VA G L+K G V G A+ L+ +D MD+QMPEMD
Sbjct: 1273 KARILLAEDNIINQQVALGILRKFGLRADAVANGMEALSALSSL-PYDLVLMDVQMPEMD 1331
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G QAT IR E+ A+M G V H+PI+AMTA +Q E+C++ GMD
Sbjct: 1332 GLQATQWIR-------------ENEAQMAGAVA--HIPIIAMTAHAMQGDRERCLQAGMD 1376
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
DY+ KP + L + ++
Sbjct: 1377 DYLQKPVSPDALLQILQKWL 1396
>gi|94263977|ref|ZP_01287779.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455649|gb|EAT05831.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1211
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 205/619 (33%), Positives = 302/619 (48%), Gaps = 108/619 (17%)
Query: 603 NDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ--LDYA 660
D E+ + + AEAA+ +KS+FLA +SHEIRTPMN ++G+ Q+ + ++ DY
Sbjct: 395 QDISEIKKAQEAAEAANRSKSEFLANMSHEIRTPMNAIIGLGQLALKSQPPPPPRLYDYL 454
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
+ S L++LIND+LD +KIE+G+L + VPF L ++L+ + L + +A +KG+EL
Sbjct: 455 EKITGSAATLLTLINDILDFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELL 514
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
V VP +++GDP R Q++ NL N+IKFT+ G + +S
Sbjct: 515 FAVDPTVPRLLVGDPHRLGQVLINLTANAIKFTE-TGEVTIS------------------ 555
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
F VVD T E L L V V DTG+G
Sbjct: 556 --------------------FEVVD--------------PTAEPL---TLRVAVRDTGIG 578
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
+ E RIF PF QAD +T+R +GGTG+GLSI+ LV+L+GGEI S PG GSTFSFT
Sbjct: 579 MSPEQIERIFQPFTQADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFT 638
Query: 901 VTFTEGE-RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
E +L P +P V + RGLR LV+DD + +V R L V A+S
Sbjct: 639 CLLGRHEPHKALCP-----LPPV-DLRGLRVLVVDDNATARQVLRQTLASFSFRVEEADS 692
Query: 960 MQLACSYLSDTCSTSVLPQLAL---VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
+ A S L+ +L + V+ + D + + +++ Q
Sbjct: 693 GRRALSLLARAAEEGQPYELVILDWVMPEFDGLECAAAIAADPLIEPQ------------ 740
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDP---ESSKKLQQK 1069
P + LL E R+E G+ LTKP+ S L + CF ++ ES +
Sbjct: 741 PLLILLTAHGREEIREEAAGRGLRHFLTKPVLPSTLYDTIMECFGQEGISRESDPGQRSD 800
Query: 1070 RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
+ + L G ++LV +DN +N++VA L G + GR AV++ +D
Sbjct: 801 ELESAAREKLAGSRLLVAEDNALNQQVAAELLAVVGIHCDLANNGREAVEQYR-RQTYDG 859
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMPEMDG+QAT IR L + +Q VPI+AMTA +
Sbjct: 860 VLMDIQMPEMDGYQATGAIRAL--PVGQQ------------------VPIIAMTAHALAG 899
Query: 1190 SNEQCMKCGMDDYVSKPFE 1208
E+C+ GMD+++ KP E
Sbjct: 900 EREKCLAAGMDEHIPKPVE 918
>gi|430744391|ref|YP_007203520.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430016111|gb|AGA27825.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 1159
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 208/656 (31%), Positives = 319/656 (48%), Gaps = 120/656 (18%)
Query: 585 LLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGML 644
L VG+ + ++EN E+ + + A A AK FLA +SHEIRTPMN ++GM
Sbjct: 371 LCVGNNVTEEMRHKKELENLIVELEKTREEAVEASRAKGDFLANMSHEIRTPMNAIIGMS 430
Query: 645 QMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNV 704
+ + T+L Q DY + S K L+ +IND+LD +KIE+GRL+ E F+L DVLD+V
Sbjct: 431 HLALQTDLAPKQRDYLKKIDGSAKALLRIINDILDFSKIEAGRLDMEAAEFNLEDVLDSV 490
Query: 705 LSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH 764
+L + KA +KG+E+ +P +LVG+S++ Q + ++
Sbjct: 491 ATLITPKAEEKGLEVLFRTEPGLP--------------LHLVGDSLRLGQ------ILIN 530
Query: 765 LADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQ 824
LA NSV K E +++ +T +E+
Sbjct: 531 LAG-----------------NSV--------------------KFTEQGEIVISTQLVEK 553
Query: 825 LGRIKLLV-TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
+L +V DTG+G+ E ++F PF+QADSST+R +GGTG+GLSIS+ LVE+MGG
Sbjct: 554 TEEQAVLAFSVRDTGIGMTAEQAGKLFQPFVQADSSTTRKFGGTGLGLSISKQLVEIMGG 613
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
+I SEPG GS F FT F ++ + ++ V E +GLR LV+DD E+
Sbjct: 614 QISVESEPGKGSVFDFTAAFGLARKSRI-----RFGRLVGELQGLRVLVVDDSGTSREIL 668
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
L+ + V VA + A L D + P LVL+D + +
Sbjct: 669 TDALESMSFEVGVATTGAEALVAL-DRAADEGRP-FDLVLMDYKMPGMD----------- 715
Query: 1004 QRRKGGLEISRNLPKIFLL-----ATSISETDRDELKSD----GIVTLLTKPLRLSVLIG 1054
G+E +R + K L ++ R+E+ S G+ L KP+ SVL+
Sbjct: 716 -----GIEAARRIKKSSRLHQAPTVVMVTAYGREEIMSRAERVGVEGFLIKPVGQSVLLN 770
Query: 1055 CFQEDPESSKKLQQKR-------KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAI 1107
E SK Q R + ++G ++G ++LV +DN +N++VA L+ G +
Sbjct: 771 TIMEVFGHSKH-QDFRPLTVPAMQLEAMGS-IRGSRVLVAEDNEINQQVAREILESAGLV 828
Query: 1108 VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAE 1167
V GR AV+ L + +DA MD+QMPE+DG QAT ++R
Sbjct: 829 VDIAANGREAVE-LVRANPYDAVLMDIQMPELDGLQATVELR------------------ 869
Query: 1168 MFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
G+ +PI+AMTA + EQ +K GMDD+V+KP + + L+ + R+ G
Sbjct: 870 --GDGRYRDLPIIAMTAHAMAGDREQSLKAGMDDHVTKPIDPDVLFAVLLRWIKPG 923
>gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
Length = 1763
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 196/624 (31%), Positives = 304/624 (48%), Gaps = 118/624 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+M K A+AA+ AKS FLA +SHEIRTPMN ++GM Q+ + TELD Q +Y + +
Sbjct: 1022 ELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDRKQRNYVEKIERA 1081
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K L+ +IND+LD +KIE+G+L+ E VPF L +L+++ +FS KA K +EL V+
Sbjct: 1082 SKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAADKQLELLFSVAPG 1141
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV-HLA---DDVRSKVDVKDKVLEK 782
VP + GDP R Q++ NL+ N+IKFT+ +G + +S+ LA D V+ K V+D +
Sbjct: 1142 VPTHLEGDPLRLSQVLINLMNNAIKFTE-RGEVMLSISELARDEDQVQLKFAVRDSGI-- 1198
Query: 783 SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIP 842
G + K +++F D + T
Sbjct: 1199 -----------------GLTAEQQAKLFKSFSQADTSTT--------------------- 1220
Query: 843 LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902
R YGGTG+GL+I + LVELMGGEIG S+ G GSTF FTV+
Sbjct: 1221 -------------------RKYGGTGLGLAICKQLVELMGGEIGVDSQFGNGSTFYFTVS 1261
Query: 903 FTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
+ L+ + E G+ LV+DD S ++ R LQ + +V A S
Sbjct: 1262 VKVAQNAQLNVE--------QELEGMAVLVVDDNSTARDILRTTLQSMGFSVDSARSGME 1313
Query: 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS--RNLPKIF 1020
A + C+ D I L+ M + + + + P I
Sbjct: 1314 AL----EKCAER---------------DYRIALIDWKMPEMDGTETAARMRELKQPPLIL 1354
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVLI-GCFQEDPESSKKLQQKRKKPSLGHL- 1078
+++ + D+++ GI +TKP+ S L+ G K +++ +P
Sbjct: 1355 MVSAHANSEFIDKVEEMGINGYITKPISASRLLDGIMSALGRQGHKPVRRKAQPMDAQKL 1414
Query: 1079 --LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
LKGK+IL+V+DN +N+ VA L++ G +++ D G+ A++KL +FD MD QM
Sbjct: 1415 SGLKGKRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKLG-QQSFDLVLMDCQM 1473
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P MDG+QAT ++R L GL +P++AMTA+ + E C+
Sbjct: 1474 PVMDGYQATRELRKLP--------------------GLAELPVVAMTANAMAGDKEMCLL 1513
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
GM+D+++KP E LY + ++
Sbjct: 1514 AGMNDHIAKPIEVGILYQTLLQYL 1537
>gi|443475197|ref|ZP_21065154.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443019984|gb|ELS33998.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 1403
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 191/626 (30%), Positives = 304/626 (48%), Gaps = 110/626 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ E + +AE A KS FLAT+SHEIRTPMN VLGM +L DT+L Q D+ +T S
Sbjct: 731 ELKEARHQAEIATKMKSAFLATMSHEIRTPMNAVLGMTGLLADTKLSPLQRDFVETVRIS 790
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G++L++LIN++LD +K+E+ +E E + F L+ ++ V L + A +K +ELA +
Sbjct: 791 GENLLTLINEILDFSKLEANEMELEEISFDLNTCVEEVTDLLAMLAQEKKLELAALIHQN 850
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP + GD R RQI+TNLV N+IKFT +G + + V L ++
Sbjct: 851 VPTYLCGDVARLRQILTNLVSNAIKFTL-QGEVIIKVSLKEET----------------- 892
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
E + +I+ V DTG+GI LE+Q
Sbjct: 893 ------------------------------------ESIAKIEFRVI--DTGIGISLESQ 914
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--- 903
++F PF Q D+ST+R YGGTG+GL+I + +V+LMGGEIG SE G GS F F ++F
Sbjct: 915 KKLFQPFTQVDASTTRKYGGTGLGLAICKQIVDLMGGEIGIDSEEGKGSQFWFQISFVKQ 974
Query: 904 TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
+ E L+P+ + + DV R L++DD ++ Y L +M V +
Sbjct: 975 SSAEIKQLEPRREVDLKDV------RVLIVDDSETNCKILTYQLTAWQMRVDAVKNASHV 1028
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
S L + QLA++ + D E + Q + L+ ++ ++
Sbjct: 1029 ISILQAAIAEGDRYQLAILDMQMPDLDGE------SLGSQIKADPNLKDTK-----LIML 1077
Query: 1024 TSISETDR-DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK 1082
TS+++ + +K G L KP++ S L+ + ++ Q P G L
Sbjct: 1078 TSLNQGGGINRVKELGFEFYLVKPIKQSRLLDVLMQVISTNPHYQ----NPVTGALRTAD 1133
Query: 1083 ---------QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
+IL+ +D+++N++VA L+ G G+ + L H +D MD
Sbjct: 1134 RPITRTSKLKILIAEDSLINQKVALHQLRSFGYDADVAGNGKEVLALLECIH-YDIILMD 1192
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
QMPEMDG++ T IR L++ ++ + I+AMTA+ ++ ++
Sbjct: 1193 CQMPEMDGYETTKAIRQLDSTKSK-------------------IAIVAMTANAMKEDRDR 1233
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
C+ GM+DY+SKP E L +A +
Sbjct: 1234 CLASGMNDYLSKPIRKEDLAHKLAEW 1259
>gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region, ATPase-like:histidine
kinase, HAMP region:histidine kinase A, N-terminal:Hpt
[Dechloromonas aromatica RCB]
gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Dechloromonas aromatica RCB]
Length = 923
Score = 274 bits (700), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 206/625 (32%), Positives = 304/625 (48%), Gaps = 102/625 (16%)
Query: 601 VENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
VE E+ K AEA AKS+FLAT+SHEIRTPMNGVLGM ++L+ TEL+ Q +
Sbjct: 249 VEQRTRELRLAKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTELLLGTELEPTQRQFV 308
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
+ SGK L+ +IND+LD +KIE+G+LE + V F L ++L+ L LFS A +KG+EL
Sbjct: 309 EAVERSGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLEL- 367
Query: 721 IYVSDRVPE---VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
V+D P+ +V GDP R RQI+TNL+GN++KFT+ G I + + + V+ +D
Sbjct: 368 --VADLPPDEKLIVRGDPLRLRQIVTNLLGNAVKFTE-TGEILLRLLV-------VEPRD 417
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
L+ +L V +T G P+ + K +E+F
Sbjct: 418 NGLKLAL--------VVSDTGIGIPLDAQEKIFEHF------------------------ 445
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+QAD ST+R YGGTG+GL+I R LV++MGG I S PG G+ F
Sbjct: 446 ----------------LQADGSTTRKYGGTGLGLAICRHLVDMMGGRIHVESTPGKGAAF 489
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
+ + G+ P+ +Q +P G R LV+DD S + EV L+ A
Sbjct: 490 TVELDLPLGKLPVASPE-KQALPAT----GARVLVVDDSSTQREVLLALLRGRGFIAEGA 544
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
S S L AL+LID + D V+ + Q NL
Sbjct: 545 ASSLAGLSVLKAAVEEG--EPYALLLIDTQMPDLPGCDVVRALRADQ----------NLA 592
Query: 1018 --KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSL 1075
++ +++ + + E S I L KP+R + L+ E + + S
Sbjct: 593 PTRVIIISAQVDALSKAERASLQIAACLPKPVRQAELLRAI-ETTLQRRSVSDTAVIDSP 651
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
L+G+ +LV +DN N VA L++ G V G+ A+D L D MD Q
Sbjct: 652 ARKLRGR-VLVAEDNESNLVVARAQLERMGLEVIAASDGQQALDILA-EETVDLVLMDCQ 709
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP +DGF AT +R E SG H+P++A+TA+ ++ E+C
Sbjct: 710 MPVLDGFAATMALREREA------VSGR------------HLPVIALTANAMKGDRERCK 751
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARFF 1220
GMD+Y++KP+ E+L T +AR+
Sbjct: 752 DAGMDEYLAKPYSGEELLTLLARWL 776
>gi|323492298|ref|ZP_08097454.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio brasiliensis LMG 20546]
gi|323313462|gb|EGA66570.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio brasiliensis LMG 20546]
Length = 1197
Score = 274 bits (700), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 201/644 (31%), Positives = 325/644 (50%), Gaps = 122/644 (18%)
Query: 592 HAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
HAA+ R A ++ + A +A+ AKS FLA +SHEIRTPMN ++GM + + T+
Sbjct: 457 HAALERFA------AKLAVARDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTD 510
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
L AQ +Y S L+ LIND+LD +KIE+G+L+ E V FHL +VLDN+ +L +
Sbjct: 511 LTKAQRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIEQVDFHLENVLDNISNLVGLR 570
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
A+++G+EL I++ VP ++GDP R QI+ NL N++KFT+ KG I +
Sbjct: 571 ASERGLELLIHIDRDVPTTLVGDPLRLGQILINLANNAVKFTE-KGEIKI---------- 619
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
S+ V+ D + L
Sbjct: 620 -----------SIRVVERNGDDLV----------------------------------LQ 634
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
+VED+G+G+ E ++F+ F QADSST+R YGGTG+GL+IS+ L +LMGG+I SE
Sbjct: 635 FSVEDSGIGMTPEQTAKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIEVQSEA 694
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVS---EFRGLRALVIDDKSIRAEVTRYHLQ 948
G GS FSF++ R S K + D+S E L+ LV+DD + + L+
Sbjct: 695 GKGSCFSFSI----ATRVSHALKQE----DISVPVELNKLKVLVVDDNASARIIVEDILK 746
Query: 949 RLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008
L+ V A+++ A S L ++ Q L++ D + K+ G+ L ++ Q +
Sbjct: 747 SLQFDVFTASNVDDAYSELQQAIGSN--SQYDLLISDWKMPGKD-GIDLVELVSQNIAQS 803
Query: 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIV--TLLTKPLRLS-------VLIGCFQED 1059
PK+ +L E + +++ G+ ++L KP+ S L G
Sbjct: 804 A------QPKLLMLTAYAREELSEAMENRGLESPSILDKPVTASHLFDAIVTLYGV---- 853
Query: 1060 PESSKKL--QQKRKKPSLGHL--LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
SS +L + ++ L ++ L G Q+L+V+DN +N+ +A L+ VT + G+
Sbjct: 854 --SSSRLSRSEAEEQHQLANVQQLAGAQLLLVEDNEINQELAIELLEGQQMHVTVAENGQ 911
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
A+D L + FD MD QMP MDG++AT IR ++N+Q
Sbjct: 912 VAID-LYKANEFDGILMDCQMPVMDGYKATQYIRQ---QLNDQ----------------- 950
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+PI+AMTA+V++ + + GM+D ++KP + +++ +A++
Sbjct: 951 QIPIIAMTANVMERDKVKAAQAGMNDIIAKPIDVGSMFSTLAQW 994
>gi|374317226|ref|YP_005063654.1| histidine kinase,Response regulator receiver domain protein,histidine
kinase,Hpt domain-containing protein [Sphaerochaeta
pleomorpha str. Grapes]
gi|359352870|gb|AEV30644.1| histidine kinase,Response regulator receiver domain protein,histidine
kinase,Hpt domain-containing protein [Sphaerochaeta
pleomorpha str. Grapes]
Length = 953
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 194/630 (30%), Positives = 304/630 (48%), Gaps = 114/630 (18%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
+++ + + A A AKS+FL+ +SHEIRTPMN ++G+ + + T L +Q DY +
Sbjct: 206 YQLEKTRGIAIANSNAKSEFLSNMSHEIRTPMNAIIGLTYLALKTNLTPSQRDYLKRIQI 265
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S + L+ +IND+LD +KIE+G++ E +PF L VLDNV +L + KA+ KG+EL V
Sbjct: 266 SSQHLLGIINDILDFSKIEAGKMSLESIPFELEKVLDNVANLTAEKASAKGLELIFVVDS 325
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VP +IGDP R Q++ N N++KFT+ KG I + +H+ K D + VL
Sbjct: 326 DVPNHLIGDPLRLGQVLINYANNAVKFTE-KGEISIHIHV------KNDTESDVL----- 373
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
L V DTGVGI +
Sbjct: 374 --------------------------------------------LHFEVRDTGVGISEDY 389
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
+ ++F F QAD+S +R YGGTG+GL+IS+ L ++MGGE+G S G GSTF FT
Sbjct: 390 KRQLFHSFQQADNSVTRRYGGTGLGLAISKKLSQMMGGEVGVESVFGQGSTFWFTALI-- 447
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
G+ N K + YVP VS+ RGLR LV+DD V L+ + V +S A
Sbjct: 448 GKSNE---KQRSYVP-VSDLRGLRVLVVDDNEHARAVITDMLENMTFRVTPVSSGAAALE 503
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL--------P 1017
++ LV +D W Q G+E +R + P
Sbjct: 504 EIAKEKRKE--EYFDLVFLD---W-------------QMPVMNGIETARRIKEIALDPAP 545
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF-----QEDPESSKKLQQKRKK 1072
+ ++ E E + +GI +L KP+ S+L ++ E+ ++ Q
Sbjct: 546 HLVIITAYGREEVIREAEEEGIENVLIKPVGASLLFDTAMHLLRKQGNETRSEIGQMPPL 605
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
G + G ++L+V+DN N+ VA L++ G +V+ G+ A+ K+ D M
Sbjct: 606 GEAGSGIGGARVLLVEDNEENQLVAMEILREAGCVVSVASNGKEAIAKVQQAA-VDIILM 664
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP MDG AT +IR L N +PI+AMTA+ ++ +
Sbjct: 665 DVQMPVMDGLAATREIRRLPYYAN--------------------LPIIAMTANAMKEDRD 704
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
C++ GM+DY++KP + + L+ + +++ +
Sbjct: 705 HCLEAGMNDYITKPIDPKTLFAVIGKYYTA 734
>gi|410672176|ref|YP_006924547.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
gi|409171304|gb|AFV25179.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
Length = 1772
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 204/615 (33%), Positives = 295/615 (47%), Gaps = 104/615 (16%)
Query: 605 YHEMMELK--------ARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
Y E +E+K ARAE A AKS+FLA +SHEIRTPMNGV+GM +L+DTEL+ Q
Sbjct: 1104 YAEEVEMKNKELDMALARAEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDTELNEEQ 1163
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
Y +T SG+ L+ +IND+LD +KIE+G+LE E + F LH +LD+ S+ S +A+ KG
Sbjct: 1164 RHYVETVQASGEALLEIINDILDFSKIEAGKLELEVLDFDLHSLLDDFASMLSIRAHDKG 1223
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
+E VP + GD GR +Q++ NL GN++KFT +G + V V L
Sbjct: 1224 LEFICAAEPAVPAYIRGDTGRLQQVLVNLTGNAVKFTH-QGEVAVRVTL----------- 1271
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
+S+ L F V D
Sbjct: 1272 -------------ESETDAGALLRFSVRD------------------------------- 1287
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+GIP + +F F Q D+ST+R YGGTG+GL+IS+ LVE+MGGEIG SE G GS
Sbjct: 1288 TGIGIPKDKIGSLFGQFYQVDASTTRQYGGTGLGLAISKQLVEMMGGEIGVRSEEGKGSE 1347
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
F FT F + P + + + R LV+DD + E+ L
Sbjct: 1348 FWFTAHFAK------QPDCDRKKIMSGDIQSARILVVDDNATNREILINQLSSWGSRAKE 1401
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
A +A L + Q+AL+ + D G L ++K +
Sbjct: 1402 AVDGPMALQALYKAYEDNEPFQVALLDMQMPGMD---GATLARIIKSDEKLKNTH----- 1453
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKPS 1074
+ +L++ + +L+ LTKP+R S L+ E+ K++ +
Sbjct: 1454 --LIMLSSMGQWSASQQLEKSYFEAYLTKPVRQSSLLDKLSSILSMETEKQMSHSPLTMN 1511
Query: 1075 L--GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL-TPPHNFDACF 1131
L + ++L+ +DN+VN++VA+ LKK G V G AV L T P +D
Sbjct: 1512 LTSKRGINNVRVLLAEDNIVNQKVAQSMLKKLGFRADTVANGAEAVKALETLP--YDLVL 1569
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMPEMDG +AT IR Q S + E +PI+AMTA ++
Sbjct: 1570 MDVQMPEMDGMEATRLIR--------QPGSAVLNRE---------IPIIAMTAHAMKGDR 1612
Query: 1192 EQCMKCGMDDYVSKP 1206
E+ ++ GMDDY+SKP
Sbjct: 1613 ERFIEAGMDDYISKP 1627
>gi|406903298|gb|EKD45424.1| hypothetical protein ACD_69C00300G0001, partial [uncultured
bacterium]
Length = 644
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 191/602 (31%), Positives = 297/602 (49%), Gaps = 108/602 (17%)
Query: 632 EIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691
EIRTP+NGV+GM +L+DT L Q +Y +T SG+ L+ +IND+LD +KIES +E E
Sbjct: 1 EIRTPLNGVIGMTSLLLDTILSMQQREYVETIRVSGEALLLVINDILDFSKIESEHMEIE 60
Query: 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIK 751
V F ++ ++++ L +F+ +A+ KGI Y+ VPE ++GD R RQ++ N++ N++K
Sbjct: 61 KVDFSIYALIEDSLDIFTVQAHNKGIAFGAYIDPAVPEWLVGDSMRIRQVLNNILSNAVK 120
Query: 752 FTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWE 811
FT+ G I +
Sbjct: 121 FTE-SGEISI-------------------------------------------------- 129
Query: 812 NFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGL 871
N +++ T ++ ++ LL+ V+DTG+GI EA +R+F PFMQ D+S SR YGGTG+GL
Sbjct: 130 NVRLIKTAITNDK--KLTLLIEVKDTGIGITPEAYMRLFEPFMQGDTSISRKYGGTGLGL 187
Query: 872 SISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRAL 931
+IS+ LVELMGG I SE G GS F FT+ E +++ PK + + + G R L
Sbjct: 188 AISKRLVELMGGTINVESELGRGSKFWFTIELAES-THAITPKIDYAL--IKQIHGARIL 244
Query: 932 VIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDK 991
+DD I E+ + + M +A + A S L + D+D +
Sbjct: 245 CVDDNVINREIIQRQTKNWHMRCDLAENAAEALSMLKKAAA------------DRDPY-- 290
Query: 992 EIGLVLHYMLKQQRRKGGLEISRNLPKI-----FLLATSISETDRDELKSDGIVTLLTKP 1046
+ ++ YM+ ++I R LP+I +L++ + +ELK GI L+KP
Sbjct: 291 -VLALVDYMMPGMSGFELIQIMRQLPEIKNVPVIILSSLGASFSINELKRLGISLSLSKP 349
Query: 1047 LRLS--------VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAE 1098
L LS VLI + Q +P K +IL+ +DN+ N++VA
Sbjct: 350 LHLSRLYESITTVLIKMRGKVDTLVSPTQIVPVQPK-----KHYRILLAEDNITNKQVAL 404
Query: 1099 GALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ 1158
L++ G V G A+ L ++D MD QMP MDG+ AT +IR +E
Sbjct: 405 WILERLGYHADSVSNGYEAIQTLKNT-SYDLILMDCQMPGMDGYTATAEIRKME------ 457
Query: 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
G+ H+PI+AMTA ++ E+C++ GMDDY+SKP L ++R
Sbjct: 458 --GGQQP----------HIPIIAMTAHALKGDREKCLQVGMDDYISKPINFTVLTEMLSR 505
Query: 1219 FF 1220
+
Sbjct: 506 WL 507
>gi|323495545|ref|ZP_08100619.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio sinaloensis DSM 21326]
gi|323319426|gb|EGA72363.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio sinaloensis DSM 21326]
Length = 1198
Score = 273 bits (699), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 199/645 (30%), Positives = 323/645 (50%), Gaps = 122/645 (18%)
Query: 592 HAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
HAA+ R A +++ + A +A+ AKS FLA +SHEIRTPMN ++GM + + T+
Sbjct: 457 HAALERFA------NKLAIARDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTD 510
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
L AQ +Y S L+ LIND+LD +KIE+G+L+ E V F L +VLDN+ +L +
Sbjct: 511 LTKAQRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIEQVDFQLENVLDNISNLVGLR 570
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
A+++G+EL I++ VP ++GDP R Q++ NL N++KFT ++G I ++V +A+
Sbjct: 571 ASERGLELLIHIERDVPTALVGDPLRLGQVLINLSNNAVKFT-ERGEIKITVSVAE---- 625
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
+S EN I+L
Sbjct: 626 ------------------------------------RSGEN---------------IRLK 634
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
V D+G+G+ E ++F+ F QADSST+R YGGTG+GL+IS+ L +LMGG+I SE
Sbjct: 635 FRVSDSGIGMTPEQTQKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIQVESEA 694
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G GSTFSFT+ + + + + Q VP E L+ L++DD + R L+ +
Sbjct: 695 GVGSTFSFTI---QTQISQALKQEQTVVP--KEIGKLKVLIVDDNA----SARIILEDIL 745
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
+ S++L C +S+ + L L D +D L+ + Q K G++
Sbjct: 746 L------SLKLECQQVSN--ADDALTALTTAASDGAPFDL---LISDW---QMPGKDGID 791
Query: 1012 ISRNL---------PKIFLLATSISETDRDELKSDGIVT--LLTKPLRLS----VLIGCF 1056
+ ++ PK+ +L E + L+ I LL KP+ S +I +
Sbjct: 792 LIESMQQAFSSVQQPKVLMLTAYGREELSEALQKRHIELPGLLDKPVTASHLFDAIIALY 851
Query: 1057 Q-EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
E+ S+ +++ + + L G Q+L+V+DN +N+ +A L+ +T + G+
Sbjct: 852 GVENERLSRGEVEEQLQLANVQSLAGAQLLLVEDNEINQELATELLEGQQIHITIAENGQ 911
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
AVD L FD MD QMP MDG++AT IRH +G
Sbjct: 912 QAVD-LYQTQEFDGILMDCQMPIMDGYEATEYIRH--------------------QLGNS 950
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+PI+AMTA+V++ E+ GM+D ++KP + +++ +A++
Sbjct: 951 QIPIIAMTANVMERDKEKAQASGMNDIIAKPIDVGSMFSTLAKWI 995
>gi|373459707|ref|ZP_09551474.1| GAF sensor hybrid histidine kinase [Caldithrix abyssi DSM 13497]
gi|371721371|gb|EHO43142.1| GAF sensor hybrid histidine kinase [Caldithrix abyssi DSM 13497]
Length = 807
Score = 273 bits (699), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 196/617 (31%), Positives = 305/617 (49%), Gaps = 105/617 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A+ KS+FLA +SHEIRTPMN V+G+ ++L++TEL+ Q D+ T S L++LI
Sbjct: 281 AEKANKFKSEFLANMSHEIRTPMNAVIGLTELLLNTELNEEQRDFLTTIKESAYGLLALI 340
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+G+L+ F + +++ + KA++K +ELA+++ +P VIGD
Sbjct: 341 NDILDFSKIEAGKLDLSEEEFDIRTLIETTAEGLAHKADEKDLELAVFIDPDLPTNVIGD 400
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
PGR RQ++TNL+GN+IKFT KG I V
Sbjct: 401 PGRVRQVLTNLLGNAIKFTH-KGEIVVES------------------------------- 428
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
K+LD+ + +K+ +V DTG+GIP E IF F
Sbjct: 429 -------------------KLLDSFDDT-----LKIQFSVRDTGIGIPKEKLDLIFKEFT 464
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD ST+R YGGTG+GLSIS+ L E+MGG+I SE GSTF FTVT G++ K
Sbjct: 465 QADGSTTRKYGGTGLGLSISKKLTEMMGGKIWVESEVNKGSTFYFTVTLKPGKK-----K 519
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
+ + ++ E LR L++DD + + L + A L
Sbjct: 520 IAKRLIELEEIHNLRVLIVDDNKTNRFILQQILTNWNFRPEACEGGKEAIVRLKKAKQEG 579
Query: 975 VLPQLALVLIDKDV--WDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
A+VL+D + WD E + ++K+ K +I +L + D
Sbjct: 580 --DPFAIVLLDMQMPEWDGE--MTAKAIIKEPELKDA--------RIIILTSLGHRGDAS 627
Query: 1033 ELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPSL-GHLL-----KGK 1082
LK G L KP++ + ++ Q+ E + +K ++ + H++ +G
Sbjct: 628 YLKQLGCSAYLVKPVKQSHLFNTIVNVLQQSVEDRPEAAEKEEEKFITSHVIEEQIRQGI 687
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+IL+ +DNM+N++VA ++K + V+ G+ A H +D MD+QMP MDG
Sbjct: 688 RILLAEDNMINQKVARKIIEKKNYALDIVNNGKEAYKAALRQH-YDIILMDVQMPVMDGI 746
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+AT +IR + G H+PI+AMTA ++ E+C+ GMDDY
Sbjct: 747 EATKKIRSKLD-------------------GHRHIPIIAMTAHAMKGDREKCLAAGMDDY 787
Query: 1203 VSKPFEDEQLYTAVARF 1219
+SKP + + LY + ++
Sbjct: 788 ISKPIKPDDLYAMIEKW 804
>gi|428310395|ref|YP_007121372.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252007|gb|AFZ17966.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1392
Score = 273 bits (699), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 210/675 (31%), Positives = 323/675 (47%), Gaps = 119/675 (17%)
Query: 570 PWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATV 629
PW +G +VI A +RI +E++E + A A KSQFLA +
Sbjct: 668 PWYLPEGEVGGIVI----------ATDRI-------NELVEAREAALEAARLKSQFLANM 710
Query: 630 SHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLE 689
SHEIRTPMNGVLGM +L+ T L QL+YA T +S + L+++IND+LD +K+E+G ++
Sbjct: 711 SHEIRTPMNGVLGMAGLLLQTPLTPQQLEYASTIRSSAEHLLTVINDILDFSKLEAGEMQ 770
Query: 690 PEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNS 749
E + F L +++V+ + +++A++KG+ELA+++S VP+++ GDP R RQI+ NLVGN+
Sbjct: 771 LESIDFELDSCIESVVDVLAAQAHEKGLELAMWISSDVPKMLKGDPNRLRQILLNLVGNA 830
Query: 750 IKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKS 809
+KFT D G + V V ++ + ++ D+ + L + H FP R++
Sbjct: 831 VKFT-DVGQVLVKVSVSRERGTQTDISETQL-----PITHYP---------FPSYLRFE- 874
Query: 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGI 869
V DTG+GI + Q ++F F Q D+ST+R YGGTG+
Sbjct: 875 ------------------------VTDTGIGISAKDQEKLFQSFSQVDASTTRQYGGTGL 910
Query: 870 GLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLR 929
GL I + LVELMGGEIG S GS F FT +F P V E
Sbjct: 911 GLVICKQLVELMGGEIGVESALNQGSKFWFTASFDS--------------PTVGEAAACP 956
Query: 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVA---NSMQLACSYLSDTCSTSV---------LP 977
++ K + Q L A+H + N + +LSD+ V L
Sbjct: 957 LVLHKLKLLVVSAQTTTRQALCAALHRSIRLNDSAVPAGWLSDSWEMQVDEAVDTLTTLN 1016
Query: 978 QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP-----KIFLLATSISETDRD 1032
L L + + + I L L + + + + R P K+ ++ TS
Sbjct: 1017 ALRLSVAQGNPYHLAI---LDLQLPKPQGAILVPMIRCDPTLAQTKLIVMTTSDRLDTVQ 1073
Query: 1033 ELKSDGIVTLLTKPLRLSVLIGCF-----QEDPESSKKLQQKRKKPSLGHLLKGK---QI 1084
EL+ I L KP+R S L+ C ++PE+ ++ + K+ + + K +I
Sbjct: 1074 ELEGMDISGYLIKPVRASRLLDCLVSAFAPQEPENQSRVSCEPKEATAQNPKPAKSALKI 1133
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+V+D+ VN+ V L G CV G A+ +LT N+D MD QMP +DG+
Sbjct: 1134 LLVEDHEVNQMVTLNQLAMLGFEADCVGNGEEAIAQLT-QQNYDLVLMDCQMPILDGYDT 1192
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T +IR E H I+A+TA + ++C+ GMDDY+S
Sbjct: 1193 TQEIRRREGSER-------------------HTTIIALTAHALPNDRQKCIDAGMDDYLS 1233
Query: 1205 KPFEDEQLYTAVARF 1219
KP E L + R+
Sbjct: 1234 KPIAQEALGAMIERW 1248
>gi|334119823|ref|ZP_08493907.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457464|gb|EGK86087.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1702
Score = 273 bits (699), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 195/619 (31%), Positives = 304/619 (49%), Gaps = 72/619 (11%)
Query: 605 YHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAH 664
+ + + + A A KS FLA +SHEIRTPMNGV+GM +L+ T L Q+D+ QT
Sbjct: 1006 FEQAQQAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLLLKTNLTPEQIDFVQTLK 1065
Query: 665 NSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724
SG++L+S+IND+LD +K+E+G + E + F+L ++ VL L ++ A +KGIE+ +
Sbjct: 1066 LSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEKGIEVVALID 1125
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD--VRSKVDVKDKVLEK 782
VP + GD R RQI+TNL+ N+IKFT+ G + + V A + + + D K+LEK
Sbjct: 1126 TDVPLQIKGDAARLRQILTNLINNAIKFTE-AGEVVIEVADASNPGLLAASD-NQKILEK 1183
Query: 783 SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIP 842
E K+ +N + + LL V DTG+GI
Sbjct: 1184 ---------------------------IEPLKIENNDSML-------LLFKVTDTGIGIA 1209
Query: 843 LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902
E Q ++F F Q D+ST+R YGGTG+GL+IS+ LVELMGG+IG S PG GSTF FTV
Sbjct: 1210 TEDQKKLFQSFTQVDASTTRKYGGTGLGLAISKELVELMGGQIGVESTPGQGSTFWFTVP 1269
Query: 903 FTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDK-SIRAEVTRYHLQRLEMAVHVANS-M 960
+ + + + V G + L+ DK ++R + R + V N M
Sbjct: 1270 TVKENLTGVGTACEVNLETV--LAGRKMLIASDKPTVRKVLVRMAVVWGMEVEEVENGWM 1327
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
+A Y + S+ +VL+D + + G + + E + K
Sbjct: 1328 TIASLY----KAVSLNSPYDIVLVDIQLPEMVAGSLERLRIS--------EPAMQQTKWV 1375
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-- 1078
+L + + L G LTKP++ L C S + + + P+
Sbjct: 1376 VLTSMTQLAEAKRLVDSGFSGYLTKPVKAHRLFDCLANAIAPSTLIDESQANPTSNRASA 1435
Query: 1079 -----LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L +IL+V+D +N++V L+ G + G A+ + +D MD
Sbjct: 1436 IDNRDLASLKILLVEDTPINQKVGLNQLRVLGCAADVANNGAEAL-SMVALKKYDIVLMD 1494
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
QMP +DG++AT Q+R LE +A+G+ + ++AMTA+ ++ E+
Sbjct: 1495 CQMPVLDGYEATLQLRGLE---AADLAAGKMESHQ-------KTVVIAMTANALKGDREK 1544
Query: 1194 CMKCGMDDYVSKPFEDEQL 1212
C+ GMDDY+SKP E+L
Sbjct: 1545 CLAAGMDDYISKPISIEKL 1563
>gi|392378909|ref|YP_004986068.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
gi|356881276|emb|CCD02261.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
Length = 1264
Score = 273 bits (698), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 195/620 (31%), Positives = 302/620 (48%), Gaps = 104/620 (16%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AEAA AKS FLA +SHEIRTPMNGV+GM +L++T L QL +AQ +S L+++I
Sbjct: 598 AEAATHAKSDFLAAMSHEIRTPMNGVIGMTDLLLETGLIGEQLQFAQAVRSSANALLTII 657
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +K+E+GR+E E +PF+ D+L+ V+ L KA++KGI+L I +S V+GD
Sbjct: 658 NDILDMSKLEAGRVELETLPFNPADLLEGVVELLWPKAHEKGIDLGILLSPEARHTVLGD 717
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQI+ NLVGN++K+T+ G++ + +Q ++D
Sbjct: 718 ATRLRQILVNLVGNAVKYTE-TGNVVIE----------------------TGIQTQTDG- 753
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
N+ T+ L V DTG+GIP EA R+F+ F
Sbjct: 754 -----------------------NSETIH-----TLRFDVIDTGIGIPSEAISRLFSRFE 785
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
Q D + +R YGGTG+GL+I + L ELM G I S+ TGS F+ V +S +
Sbjct: 786 QVDRTIARRYGGTGLGLAICKQLTELMQGRITVKSDQATGSQFTVEVPIRIANGSSQQSE 845
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
W F G ALVI + L+ L + V A+ Q A + L+ TS
Sbjct: 846 WMS-------FTGRHALVIKPPGFNRRILTAQLRSLTLDVQEASDAQTARAALAKAV-TS 897
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT---SISETDR 1031
P +V + + ++D +L + GL+ S P+I L+ + ++ T
Sbjct: 898 GHP-FDVVFVSQSLFDTVSDTLLQF---------GLDRSDYAPRIILVCSYGAPLASTGN 947
Query: 1032 DELKSDGIVTLLTKPLRL----SVLIGCFQEDPESSKKLQQKRKKPSLGHL----LKGKQ 1083
D+L L +P+R+ S+L F + ++ + P + +
Sbjct: 948 DKLVP---FACLARPIRMAALSSILGRLFSDGLDAPLATPARSHHPPEREINRPPARSAH 1004
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
IL+ +DN N+ +A L++ G V VD G A++ ++ +D MD+QMP + GF+
Sbjct: 1005 ILIAEDNATNQLIAATLLRRAGFTVDIVDDGVQALEAMS-LRPYDLVLMDVQMPNLTGFE 1063
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT IR L G + VP++A+TAD + + E+C++ GM+D V
Sbjct: 1064 ATEHIRALR---------GPRAT----------VPVIALTADAMIETRERCLRAGMNDVV 1104
Query: 1204 SKPFEDEQLYTAVARFFMSG 1223
+KPFE L + R+ G
Sbjct: 1105 TKPFERSALLGVINRWLDMG 1124
>gi|428214525|ref|YP_007087669.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002906|gb|AFY83749.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1970
Score = 273 bits (698), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 202/645 (31%), Positives = 312/645 (48%), Gaps = 98/645 (15%)
Query: 594 AINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 653
AI I V ++ +E+++ + +A A KSQFLA +SHEIRTPMNGVLGM ++L+ T+L
Sbjct: 1269 AIGGIVMVSSEINELVKAREQALEAARLKSQFLANMSHEIRTPMNGVLGMTELLLRTQLT 1328
Query: 654 AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKAN 713
Q D+ +T SG++L++LI+D+LD +K+E+G + + F L+ L++ + LF+ A
Sbjct: 1329 EQQQDFVKTLKISGENLLTLIDDILDFSKLEAGEMRLDHHEFDLNRTLEDTVDLFTLSAA 1388
Query: 714 QKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773
K IELA V+ VP + GD R RQI+TNL+GN+IKFT+ +G + ++V+ AD
Sbjct: 1389 SKEIELAFLVALDVPRYLKGDASRLRQILTNLLGNAIKFTE-RGEVVITVNRADSTP--- 1444
Query: 774 DVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVT 833
E+SL + + R+ L +
Sbjct: 1445 -------EQSLEAPDGAA-----------------------------------RLSLTFS 1462
Query: 834 VEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGT 893
V D+G+GI ++F F Q D+ST+R YGGTG+GL+I + L +LMGGEIG S+ G
Sbjct: 1463 VRDSGIGIGPSDCKKLFQSFSQVDTSTTRKYGGTGLGLAICKQLTQLMGGEIGVESQLGV 1522
Query: 894 GSTFSFTVTFTEGERNSLDPKWQQYVPDV-----SEFRGLRALVIDDKSIRAEVTRYHLQ 948
GS F FTV F E ++ P P S RG + L++DD I +V R
Sbjct: 1523 GSIFWFTVQFERVE--TIPPNLGFTQPSSLDAAGSILRGKKLLIVDDSPINRQVVRQQAS 1580
Query: 949 RLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008
M V A A L ST LAL+ + D EI L Q
Sbjct: 1581 HWGMEVSEAEDGLEAIKLLRKAVSTGNPFTLALLDMQMPKMDGEI-------LGQLILTD 1633
Query: 1009 GLEISRNLPKIFLLATSISETDRDELKSD-GIVTLLTKPLRLSVLIGCF----QEDPESS 1063
L + +L ++ TSI+E+ + D G L KP++ + L+ C D
Sbjct: 1634 PLLATTSL----IMMTSINESYQARKFLDLGFSAYLIKPIKEARLLECLIRGISSDGYEG 1689
Query: 1064 KKLQQKRKKPSLGHL---------LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCG 1114
L + + +K IL+V+D +N++V L+ G C + G
Sbjct: 1690 SSLSAAESGVAASAVPGNNWEPEEIKALNILLVEDTRINQKVVLNQLESLGFEADCANNG 1749
Query: 1115 RAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL 1174
+ A+DK+ ++ FMD QMP +DG+ AT IRH E +
Sbjct: 1750 QEALDKMQ-VKEYNLVFMDCQMPVLDGYDATRAIRHREGDRR------------------ 1790
Query: 1175 WHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
H+ ++ +TA ++ ++C+ GMDDY++KP + L A+ ++
Sbjct: 1791 -HMVVIGLTAYAMEGDRQKCLAAGMDDYLTKPVSVKDLQRAIRQW 1834
>gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
DK 1622]
gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
DK 1622]
Length = 944
Score = 273 bits (698), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 205/634 (32%), Positives = 315/634 (49%), Gaps = 118/634 (18%)
Query: 605 YHEMMELKARAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQ 661
YH++ +L+ +AA + AKS FLAT+SHEIRTPMN ++GM +L+D L Q D+
Sbjct: 250 YHDITDLERARKAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRALTEEQRDFVA 309
Query: 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
T S + L++L+NDVLD +KIE+GR E E PF L +++VL L + +A++KG++L
Sbjct: 310 TIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGC 369
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLE 781
++ +P++++GD R RQ++ NLVGN++KFT+ G + LA
Sbjct: 370 DLAPPLPQMLVGDASRLRQVLLNLVGNALKFTEHGGAVVSVEGLA--------------- 414
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
L + +D WE L +V+DTG+GI
Sbjct: 415 --LGGTEGAAD-----------------WE------------------LTFSVQDTGLGI 437
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE--PGTGSTFSF 899
P + + +F PF Q D+S SR +GGTG+GL+IS+ LVE MGG I SE PG G+TF F
Sbjct: 438 PDDRRTGLFQPFNQLDASVSRRFGGTGLGLAISKRLVEAMGGTIWVESEGVPGQGTTFRF 497
Query: 900 TVTFTEGERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA-VHVA 957
T+ + ++ P+ +Q + +G R LV+DD ++ + LQ + V A
Sbjct: 498 TLRAQAAPQAYAVQPRQEQGL-----LQGRRVLVVDDNALFRRLLGRQLQAWGLVPVESA 552
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ M A + L S VLID + + G L ++Q+ E +R LP
Sbjct: 553 SGMD-ALAQLEAGASFDA------VLIDHHMPGLD-GTALAERIRQR------EETRALP 598
Query: 1018 KIFLLATSISETDRDELKSDGIVT-LLTKPLRLS----VLIGCFQEDPESSKKLQQKRKK 1072
+ +S R +G+ +L++PL+ S L+ CF + + +Q R
Sbjct: 599 LVL-----VSTPGRRGNPPEGLFAGVLSRPLKDSQLYDALVSCFSQHLPQLPEPRQTR-- 651
Query: 1073 PSLGHLLKGKQ--------ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
PS G++ IL+V+DN N+++A L++ G GR A+ L+
Sbjct: 652 PSRAGPFPGERPGDTVPLDILLVEDNATNQKLALLVLERLGYRADVALNGRQALQALS-Q 710
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
+DA MDLQMPEMDG +AT +IR E+ W ++AMTA
Sbjct: 711 KRYDAVLMDLQMPEMDGLEATRRIRQ----------------ELPPKAQPW---VIAMTA 751
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ + + EQC GMDD++ KP E L A+ R
Sbjct: 752 NAMDSDREQCFSAGMDDFLGKPIRVEALTAALLR 785
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 23/143 (16%)
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
LL+G+++LVVDDN + RR+ L+ G + G A+ +L +FDA +D MP
Sbjct: 518 LLQGRRVLVVDDNALFRRLLGRQLQAWGLVPVESASGMDALAQLEAGASFDAVLIDHHMP 577
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
+DG +IR E E+ A +P++ ++ + + + +
Sbjct: 578 GLDGTALAERIRQRE----------ETRA----------LPLVLVSTPGRRGNPPEGLFA 617
Query: 1198 GMDDYVSKPFEDEQLYTAVARFF 1220
G+ +S+P +D QLY A+ F
Sbjct: 618 GV---LSRPLKDSQLYDALVSCF 637
>gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1233
Score = 273 bits (698), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 199/607 (32%), Positives = 301/607 (49%), Gaps = 91/607 (14%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
+ + K AEAA AK FLA +SHEIRTPMNG++GM ++ +DTEL++ Q +Y +S
Sbjct: 589 LRQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTELALDTELNSEQREYLGLVQSSA 648
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
L++++ND+LD +KIESG+L+ E + F L +L + + +A+QK +EL ++V+ V
Sbjct: 649 DALLTILNDILDFSKIESGKLDIENIEFSLEHMLRETMKSLAVRAHQKQLELLLHVAPDV 708
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P+ ++GDPGR RQ+I NLVGN+IKFT G I +VDV+
Sbjct: 709 PDRLLGDPGRLRQVIVNLVGNAIKFTA-SGEI------------EVDVQ----------- 744
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
L G P G++++ +V DTG+GI +
Sbjct: 745 ---------CLKGAPE----------------------GQMRMQFSVRDTGIGIARDKFQ 773
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
IF F QAD+ST+R YGGTG+GL+IS LV LMGG I SE G GS F FT+
Sbjct: 774 TIFESFSQADTSTTRRYGGTGLGLTISAQLVSLMGGSIALESEVGQGSNFYFTLDMPMLS 833
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
+ L ++QQ G+ L+ DD + + + L +M V ++ Q A L
Sbjct: 834 VSPL-AEYQQ----TGRIAGMTVLIADDNATNRRLLQEMLTNWKMHPVVTSNGQEALDEL 888
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+ ++ L L+D + D + G L +++ L K ++ TS
Sbjct: 889 ARATASG--HPYGLALLDLQMPDMD-GFELAEHIREH--------PEYLVKTLMMLTSEG 937
Query: 1028 ETDR-DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILV 1086
+ + G+ L KP+ S L S+ Q + SL + + +L+
Sbjct: 938 QRGHASRCRELGVAAYLMKPIAQSELFDAIMTALGVSE--QPLTTRHSLKEMRRRLNLLL 995
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
+DN VN+ +A L K G VT + G AV +L +FDA MD+ MPEM+G+ AT
Sbjct: 996 AEDNAVNQTLATRLLTKLGHTVTVANNGIEAV-QLWQNGSFDAILMDVDMPEMNGYDATR 1054
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
IR E ++ VG H+ I+AMTA +Q + E+C+ GMD Y++KP
Sbjct: 1055 CIREQEQQL---------------GVGA-HIRIVAMTAHAMQGAREECLLNGMDGYLTKP 1098
Query: 1207 FEDEQLY 1213
+ E L+
Sbjct: 1099 IDTEALW 1105
>gi|148975382|ref|ZP_01812306.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3]
gi|145965306|gb|EDK30556.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3]
Length = 796
Score = 273 bits (697), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 203/666 (30%), Positives = 311/666 (46%), Gaps = 135/666 (20%)
Query: 591 FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
++ +I RI Q Y E+++ K AE A+ KS+FLA +SHEIRTPMNG++G+ +L +
Sbjct: 215 YNQSIERIRQ---QYQELIKAKETAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM 271
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
++ Q +Y + S L+ LIND+LD +KIE+GRLE + P + + +V S F
Sbjct: 272 DMPKEQKEYVNMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRV 331
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
KA QKG+ + + ++P +VIGD + RQ++ NLVGN+IKFT+ +GH+ +S+ L
Sbjct: 332 KAEQKGLRFQLEIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTE-RGHVTLSLRL----- 385
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKL 830
+KV+E EQ R++
Sbjct: 386 ------EKVIEP----------------------------------------EQKLRVRF 399
Query: 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
V D+G+GI + Q +F F QAD ST+R YGGTG+GL+I +V LMG ++ S
Sbjct: 400 --EVADSGIGIAEDKQKSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLELTSI 457
Query: 891 PGTGSTFSFTVTFT---EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHL 947
G GSTF F F E + +++D F + L++DD + +T L
Sbjct: 458 EGKGSTFYFVADFEPCLEIDESNID------------FNKVSVLLVDDSQLNMRITSTQL 505
Query: 948 QRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007
Q ++ + A +S++ + LVLIDK V G Q RK
Sbjct: 506 QSFGVSSTCCETATEALELVSESVENA--SPYDLVLIDK-VMPSIDGF-------QLARK 555
Query: 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--------- 1058
+ PK+ +++ + D + G + + +P + + L E
Sbjct: 556 LIERFGKACPKLVMISADPRKQDEMHAQQVGFIAYIARPYQDNQLKWTISEVLARTAETE 615
Query: 1059 ---------------DPESSKK--------LQQKRKKPSLGHLLKGKQILVVDDNMVNRR 1095
DP S+ K ++ + +P L ++LVV+D+ VN++
Sbjct: 616 TFTYPNRGEVAFKDNDPLSTTKPAVVAKESIKAEESEPQTETSLFSGKVLVVEDSRVNQQ 675
Query: 1096 VAEGALKKHGAIVTCVDCGRAAVDKLTPPHN-FDACFMDLQMPEMDGFQATWQIRHLENE 1154
VA+ LKK G V D G+ VDK HN + FMD QMP +DGF+AT QIR E
Sbjct: 676 VAKMMLKKLGFEVDIADNGKVGVDKF--KHNEYQMIFMDCQMPVLDGFEATKQIRAHEE- 732
Query: 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYT 1214
G S H+PI+A+TA+V+Q C GMD+++ KP +L
Sbjct: 733 -------GTSK----------HIPIVALTANVVQRDKHLCFDVGMDEFLPKPVNQGKLRE 775
Query: 1215 AVARFF 1220
VA F
Sbjct: 776 IVASFL 781
>gi|254409964|ref|ZP_05023744.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196183000|gb|EDX77984.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1946
Score = 273 bits (697), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 208/615 (33%), Positives = 307/615 (49%), Gaps = 96/615 (15%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
M + K AEAA+ AKS FLAT+SHEIRTPMN V+GM +L+DT+L Q ++A+T NSG
Sbjct: 1242 MEKAKQIAEAANRAKSDFLATMSHEIRTPMNAVIGMTGLLLDTQLSHEQAEFAETIRNSG 1301
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+++IND+LD +KIESG+LE E PF+L ++ L L + KA +K IELA
Sbjct: 1302 EALLTIINDILDFSKIESGKLELEEQPFNLRTCIEESLDLLTPKAAEKAIELAYLFDPHT 1361
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P + GD R RQI+ NL+ N++KFT +G + VSV +V +SL +
Sbjct: 1362 PNTIRGDITRLRQILVNLLSNALKFTH-QGEVTVSVS-----------SKRVSPQSLEQL 1409
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
H+++K EQ + ++L V+DTG+GIP +
Sbjct: 1410 SHRTNK-----------------------------EQ--QYEILFAVKDTGIGIPPDRLD 1438
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE-- 905
R+F F Q DSSTSR YGGTG+GL IS+ L E+MGG I SE G GS F FT+
Sbjct: 1439 RLFKAFSQVDSSTSRHYGGTGLGLVISKRLSEMMGGRIWVESEVGKGSIFYFTIVAPVCH 1498
Query: 906 -GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
++LD + Q G R L++DD + + Q + A S + A
Sbjct: 1499 IDNLSNLDLRQPQ-------LEGKRMLIVDDNATNRRILTLQGQSWGVLTRAAESGEQAL 1551
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
+L + L ++D + + G+ L ++ R+ G EI P + L T
Sbjct: 1552 DWLQQGET------FDLAILDMHMPGMD-GVNLASQIR--RQPDGQEI----PLVML--T 1596
Query: 1025 SISETDRD-ELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKK--PSLGH 1077
SI + + +L LTKP++ S VL+ P + + P +G
Sbjct: 1597 SIGKPENSGQLDEAKFAAFLTKPIKQSQLYNVLMDVLVGQPVKVRSTCEISPTIDPYMGA 1656
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
+ + IL+ +DN+VN++V L + G G ++ L ++D MD+QMP
Sbjct: 1657 NIPLR-ILLAEDNVVNQQVGLHILGRMGYRADVAANGLEVLEALH-RQSYDVVLMDVQMP 1714
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EMDG +AT +I E SAE + I+AMTA+ ++ E C++
Sbjct: 1715 EMDGLKATQRI------------CQEWSAENRPH-------IIAMTANAMRGDRETCLQA 1755
Query: 1198 GMDDYVSKPFEDEQL 1212
GMDDY+SKP E+L
Sbjct: 1756 GMDDYISKPIRVEEL 1770
>gi|383761012|ref|YP_005439994.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381381280|dbj|BAL98096.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 1606
Score = 273 bits (697), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 209/633 (33%), Positives = 308/633 (48%), Gaps = 126/633 (19%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
H +L A+AA AKS+FL+ +SHEIRTP+NGV+GM +L+DT L + Q YA+ A
Sbjct: 1071 HRAEQLAVEAQAASRAKSEFLSVMSHEIRTPLNGVIGMTGLLLDTPLTSEQRQYAEIART 1130
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
SG+ L++LIND+LD +KIE+ +LE E + F L ++++ + + + +A KG+EL +V
Sbjct: 1131 SGETLLALINDILDFSKIEARKLELERLRFDLRAMVEDAVDILAGRAQAKGLELVCFVEP 1190
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
P VIGDPGR RQI+ NL GN+IKFT+ +G + + V +A + + V ++ V + +
Sbjct: 1191 EAPTYVIGDPGRLRQIVLNLAGNAIKFTE-QGEVVIRVGVAAETATHVTLRFTVKDTGIG 1249
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
SD+++ F VD
Sbjct: 1250 I---PSDRLHRLFQPFSQVD---------------------------------------- 1266
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT- 904
SST+R +GGTG+GL IS+ L ELMGGE+G S PG GS F FT
Sbjct: 1267 ------------SSTTRRFGGTGLGLVISKQLAELMGGEVGVESTPGVGSVFWFTAVVEK 1314
Query: 905 -----EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKS-----IRAEVTRYHLQRLEMAV 954
E SLD R LV+DD + VT+++ R + AV
Sbjct: 1315 CADAGEAPETSLD------------LHHARLLVVDDNDANRLLVHTLVTQWN-GRCDEAV 1361
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ + A S L + + AL L+D + D + GL L +++ +
Sbjct: 1362 NAHH----ALSMLREAAAQG--DPYALALLDMQMPDAD-GLTLASWIRED------PVLA 1408
Query: 1015 NLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP 1073
P I + + ++D L + I TKPLR S L +E + +Q+ +P
Sbjct: 1409 QTPLILITSLGYQGAAEQDRLFAAQI----TKPLRQSQL----REQLALALGYRQRSLQP 1460
Query: 1074 SLGHLL------KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
S + + +IL+ +DN+VN++VA LKK G V GR A+ L+ N+
Sbjct: 1461 STTAAVVAPPPGRPLRILLAEDNVVNQKVALTMLKKLGYSADAVANGREALAALS-EINY 1519
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD +MPEMDGF+AT IR SGE+ V VPI+AMTA +
Sbjct: 1520 DLVLMDCEMPEMDGFEATLHIR-----------SGEA------GVLNPSVPIIAMTAHAM 1562
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
Q E+C+ GM+DYVSKP + L TA+ R+
Sbjct: 1563 QGDRERCLAVGMNDYVSKPVQLSTLSTALERWL 1595
>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 992
Score = 273 bits (697), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 200/618 (32%), Positives = 297/618 (48%), Gaps = 120/618 (19%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A+ AK+ FLAT+SHEIRTPMNGV+GM +L+DT+LD Q +A T +S + L+++I
Sbjct: 351 AERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQLDPEQRHFATTIRDSAESLLTVI 410
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +K+E+G+L+ E F L ++++++ + + +A+ KGIE+A V +P V GD
Sbjct: 411 NDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAKGIEIASMVDPDLPAWVRGD 470
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
PGR RQI+ NL GN+IKFT G +S+ + D E S + V
Sbjct: 471 PGRLRQILMNLAGNAIKFTSHGG---ISIEVRD-------------ETSPDGAGRLRFDV 514
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
+T G P + +GR +F+ FM
Sbjct: 515 RDTGIGIP-------------------QDAIGR---------------------LFSMFM 534
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
Q D+ST+R YGGTG+GL+IS+ L E+MGG IG S PG GS F F++ F E
Sbjct: 535 QVDASTARRYGGTGLGLAISKRLTEMMGGTIGVESTPGAGSLFWFSLPFQMVETAP---- 590
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
P + G R LV+DD I +V L+ + V + A + L +T
Sbjct: 591 -----PQRPDLAGRRILVVDDSPINRDVLERQLRGFGVIVASCADAESALAELGRAAATG 645
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD-E 1033
+ A +ID + G+ ++ + R + L P ++A+S + D
Sbjct: 646 TPWEAA--IIDA----RMPGVTGSDLIGRIRAEPVLA-----PMGLIIASSQGLSPEDGS 694
Query: 1034 LKSDGIVTLLTKPLRLSVLIGC------------FQEDPESSKKLQQKRKKPSLGHLLKG 1081
K+D + KPLR ++ Q+ PES + P L+
Sbjct: 695 PKADAFI---HKPLRRQTILAVLARVLGLPHDPGLQDSPES-----EPEAIPRPARRLR- 745
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
ILV +DN VN++VA G L+K G V G AV+ + +D MD+QMPEMDG
Sbjct: 746 --ILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEAVR-SRPYDLVLMDVQMPEMDG 802
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
QAT IR L G VPI+AMTA+ ++ + C+ GMD
Sbjct: 803 LQATAAIRALTG-------------------GAERVPIVAMTANAMRGDDRMCLDAGMDR 843
Query: 1202 YVSKPFEDEQLYTAVARF 1219
Y+SKP + +L +A++
Sbjct: 844 YISKPIDRRKLMEVLAQY 861
>gi|425081150|ref|ZP_18484247.1| hypothetical protein HMPREF1306_01898 [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|428935358|ref|ZP_19008837.1| Signal transduction histidine kinase [Klebsiella pneumoniae JHCK1]
gi|405602580|gb|EKB75703.1| hypothetical protein HMPREF1306_01898 [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|426300730|gb|EKV63000.1| Signal transduction histidine kinase [Klebsiella pneumoniae JHCK1]
Length = 897
Score = 273 bits (697), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 200/613 (32%), Positives = 299/613 (48%), Gaps = 114/613 (18%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A A+ AKS FLA +SHEIRTPMNG+LGM Q+ +DT L A Q +Y +S + L+ +I
Sbjct: 261 AREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTPLTAEQREYLSLVMSSAQSLLHII 320
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD ++IESG+++ + P + + +++ A++KGIEL + +S VPEV+I D
Sbjct: 321 NDILDFSRIESGKMQVDVEPLEIRPFVQSLIRPHMPAASEKGIELLVDISPAVPEVLIVD 380
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQI+TNL+GN++KFT +G + +++ A+D
Sbjct: 381 GPRLRQILTNLLGNALKFTH-QGEVLLAIAPAEDD------------------------- 414
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
+RW+ F+ + DTG+GI E Q IF F
Sbjct: 415 ----------NRWR----FR-------------------IRDTGIGIAPEKQKAIFEAFS 441
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSST+R YGGTG+GL+IS LV LMGGE+ S+PG GS F+FT+ EG L+
Sbjct: 442 QADSSTTRRYGGTGLGLTISARLVSLMGGELTVESQPGAGSEFAFTLPL-EG----LNAA 496
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
P +S F R LV+DD S + L+++ + N+ A ++
Sbjct: 497 ASGSAP-LSRFNHQRVLVVDDNSTNLRLLDAMLRQMGLMPTCVNNAGEALRRAAEG---- 551
Query: 975 VLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
P L+L+D + D + + L L + R+ +I +L++ D +
Sbjct: 552 --PPWPLILLDAQMPDMDGVSLALELSALPEARQN---------QIVMLSSMSRHFDANM 600
Query: 1034 LKSDGIVTLLTKPLRL----SVLIGCFQEDPESSKK----LQQKRKKPSLGHLLKGKQIL 1085
LK GI L KP+ V+ G P ++ Q R + G IL
Sbjct: 601 LKRIGIAHYLHKPVAQRELHQVIAGILVPTPVATTTPAPVAQPVRDQ-------TGLNIL 653
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
+ +DN+VN++VA L++ G V+ GR A+++ +D +DLQMPEMDG A
Sbjct: 654 LAEDNLVNQKVARRLLEQLGHRCEVVNNGREALERWRAA-CWDLLLIDLQMPEMDGETA- 711
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
IR L E + +G H P +AMTA +Q E+C+ G D Y++K
Sbjct: 712 --IRLLREETHA--------------LGRQHQPAMAMTAHAMQGDRERCLAMGFDGYIAK 755
Query: 1206 PFEDEQLYTAVAR 1218
P E L A+AR
Sbjct: 756 PVSQEALREAIAR 768
>gi|408417737|ref|YP_006759151.1| sensory box histidine kinase/response regulator protein
[Desulfobacula toluolica Tol2]
gi|405104950|emb|CCK78447.1| sensory box histidine kinase/response regulator protein
[Desulfobacula toluolica Tol2]
Length = 971
Score = 273 bits (697), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 210/644 (32%), Positives = 315/644 (48%), Gaps = 117/644 (18%)
Query: 598 IAQVENDYHEMME--LKARAEAADVA--KSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 653
++Q + D M++ KA+ +A +V+ KSQFLA +SHEIRTPMNGVLGM ++L+ T L
Sbjct: 276 LSQAKKDLEAMVKNLEKAKEQAEEVSRIKSQFLANMSHEIRTPMNGVLGMTELLLTTRLS 335
Query: 654 AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKAN 713
Q YA+T NSG+ L+ +IND+LD +KIE+G+LE E + F+L ++++V L +S+A+
Sbjct: 336 ENQHRYAETIQNSGESLLEIINDILDFSKIEAGKLELEMIDFNLEQLIEDVSQLLASQAH 395
Query: 714 QKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773
K +EL + + + GDP R RQ++TNL+GN+IKFT+ KG I + ++V
Sbjct: 396 SKRLELVVAIKRGTRIYLKGDPTRLRQVLTNLIGNAIKFTE-KGEIVIKASTTRKDNNRV 454
Query: 774 DVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVT 833
++ H S + +T G DR + ++ F L
Sbjct: 455 NL-------------HLS--IKDTGVGINPQDRIRLFKAFSQL----------------- 482
Query: 834 VEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGT 893
D ST+R YGGTG+GL+ISR LV LMGG + S PG
Sbjct: 483 -----------------------DGSTTRKYGGTGLGLTISRELVSLMGGVLKCDSSPGR 519
Query: 894 GSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
GS F FT+ +N +P+ + + +GL+ L+IDD E+ + M
Sbjct: 520 GSDFFFTLPM---RKNRENPQKTGLINN-DTLKGLKVLIIDDNPTNLEILEGQIACFCMK 575
Query: 954 VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
+ L +V LVL+D ++ D + V+ +R K ++
Sbjct: 576 FDSSLRGAEGLKKLQIAQQENV--PFDLVLLDMNMPDMDGFEVI------RRIKAAPDLK 627
Query: 1014 RNLPKIFLLATS-ISETDRDELKSDGIVTLLTKPLR--------LSVLIGCFQEDPESS- 1063
+ P I +L + IS D+ + S GI LTKP+R L VL + + S
Sbjct: 628 K--PSIIMLTSVWISGEDQKAMHS-GINAYLTKPVRQSDLQNSLLKVLSQTLKGERFQSV 684
Query: 1064 -KKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD--- 1119
++ +K KP H ILV +DN+ N+ V G L+K G V+ G AV+
Sbjct: 685 TRQTSEKEIKPFDLH------ILVAEDNLTNQEVTMGMLRKFGCRVSLAVNGSQAVEIFL 738
Query: 1120 KLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPI 1179
K P D MD QMPEMDG+QA +IR E +N PI
Sbjct: 739 KELP----DLVLMDCQMPEMDGYQAAGEIRKHEKALN------------------IRTPI 776
Query: 1180 LAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
+A+TA ++ E+C+ GMDDY+SKPF+ E L + R+ +SG
Sbjct: 777 VALTAHALEGDKEKCLAAGMDDYLSKPFKSEMLQFIINRWSVSG 820
>gi|238894393|ref|YP_002919127.1| hypothetical protein KP1_2376 [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402781104|ref|YP_006636650.1| Signal transduction histidine kinase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|238546709|dbj|BAH63060.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402541999|gb|AFQ66148.1| Signal transduction histidine kinase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
Length = 897
Score = 273 bits (697), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 200/613 (32%), Positives = 299/613 (48%), Gaps = 114/613 (18%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A A+ AKS FLA +SHEIRTPMNG+LGM Q+ +DT L A Q +Y +S + L+ +I
Sbjct: 261 AREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTPLTAEQREYLSLVMSSAQSLLHII 320
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD ++IESG+++ + P + + +++ A++KGIEL + +S VPEV+I D
Sbjct: 321 NDILDFSRIESGKMQVDVEPLEIRPFVQSLIRPHMPAASEKGIELLVDISPAVPEVLIVD 380
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQI+TNL+GN++KFT +G + +++ A+D
Sbjct: 381 GPRLRQILTNLLGNALKFTH-QGEVLLAIAPAEDD------------------------- 414
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
+RW+ F+ + DTG+GI E Q IF F
Sbjct: 415 ----------NRWR----FR-------------------IRDTGIGIAPEKQKAIFEAFS 441
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSST+R YGGTG+GL+IS LV LMGGE+ S+PG GS F+FT+ EG L+
Sbjct: 442 QADSSTTRRYGGTGLGLTISARLVSLMGGELTVESQPGAGSEFAFTLPL-EG----LNAA 496
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
P +S F R LV+DD S + L+++ + N+ A ++
Sbjct: 497 ASGSAP-LSRFNHQRVLVVDDNSTNLRLLDAMLRQMGLMPTCVNNAGEALRRAAEG---- 551
Query: 975 VLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
P L+L+D + D + + L L + R+ +I +L++ D +
Sbjct: 552 --PPWPLILLDAQMPDMDGVSLALELSALPEARQN---------QIVMLSSMSRHFDANM 600
Query: 1034 LKSDGIVTLLTKPLRL----SVLIGCFQEDPESSKK----LQQKRKKPSLGHLLKGKQIL 1085
LK GI L KP+ V+ G P ++ Q R + G IL
Sbjct: 601 LKRIGIAHYLHKPVAQRELHQVIAGILVPTPVATTTPAPVAQPVRDQ-------TGLNIL 653
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
+ +DN+VN++VA L++ G V+ GR A+++ +D +DLQMPEMDG A
Sbjct: 654 LAEDNLVNQKVARRLLEQLGHRCEVVNNGREALERWRAA-CWDLLLIDLQMPEMDGETA- 711
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
IR L E + +G H P +AMTA +Q E+C+ G D Y++K
Sbjct: 712 --IRLLREETHA--------------LGRQHQPAIAMTAHAMQGDRERCLAMGFDGYIAK 755
Query: 1206 PFEDEQLYTAVAR 1218
P E L A+AR
Sbjct: 756 PVSQEALREAIAR 768
>gi|390949595|ref|YP_006413354.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390426164|gb|AFL73229.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1840
Score = 272 bits (696), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 196/637 (30%), Positives = 303/637 (47%), Gaps = 103/637 (16%)
Query: 597 RIAQVEND------YHEMMEL-KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMD 649
R+A + D HE +EL + AE A AKS+FLA +SHEIRTPMN ++GM + +
Sbjct: 1074 RVAGIRADIDNLKQLHEALELARDVAEKATRAKSEFLANMSHEIRTPMNAIIGMSHLALQ 1133
Query: 650 TELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFS 709
TELD Q +Y + H S L+ +IND+LD +KIE+G L+ E + F L DV+DN+ SL
Sbjct: 1134 TELDHKQRNYIEKVHRSAGALLGIINDILDFSKIEAGMLDMESIDFRLEDVMDNLASLLG 1193
Query: 710 SKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV 769
KA ++G+EL + VP +IGDP R QI+ NL N++KFT+ G I VSV
Sbjct: 1194 LKAEERGVELMFDLRPEVPTALIGDPLRLGQILINLGNNAVKFTEPGGEIVVSV------ 1247
Query: 770 RSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIK 829
LE S +SV
Sbjct: 1248 --------AALETSEDSV-----------------------------------------L 1258
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
L TV DTG+G+ E R+F F QAD ST+R YGGTG+GL+IS+ L E+MGGEI S
Sbjct: 1259 LHFTVRDTGIGMSPEHLERLFQSFSQADMSTTRKYGGTGLGLAISKKLTEMMGGEIRVES 1318
Query: 890 EPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQR 949
G GSTF FT F P+ + L L++DD + E+ L
Sbjct: 1319 ALGKGSTFVFTARFAPQRGEVSQPRAK-----TDALHPLHVLIVDDNATSREILSEILAA 1373
Query: 950 LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009
V A + A + L + + + LVL+D W K G+ ++ +G
Sbjct: 1374 FGFRVDQAGTGPTAIALLEQSDAQA---PYDLVLMD---W-KMPGMDGVETIRAI--QGN 1424
Query: 1010 LEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS-----VLIGCFQEDPESSK 1064
I+ ++P + ++ E R + LTKP+ S +++ +E ++
Sbjct: 1425 ARIT-HVPTMIMVTAYGREEARQAAAGLDLAGFLTKPVTPSTLLDTIMVAIGREVASRAR 1483
Query: 1065 KLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
++ + L+G +L+V+DN +N+ +A L +G V + G+ A++ L
Sbjct: 1484 ATGRQEEASEAIARLRGAHVLLVEDNEINQELALELLTMNGLSVEVANHGQEALEMLA-A 1542
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
++D MD QMP MDG++AT +IR +P++AMTA
Sbjct: 1543 ASYDGVLMDCQMPVMDGYEATREIRR--------------------QARYQSLPVIAMTA 1582
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221
+V+ E+ ++ GM+D++ KP +++ +A++ +
Sbjct: 1583 NVMTGDREKALESGMNDHIGKPINVREMFATMAKWIV 1619
>gi|390949067|ref|YP_006412826.1| signal transduction histidine kinase [Thiocystis violascens DSM 198]
gi|390425636|gb|AFL72701.1| signal transduction histidine kinase [Thiocystis violascens DSM 198]
Length = 690
Score = 272 bits (696), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 205/623 (32%), Positives = 304/623 (48%), Gaps = 95/623 (15%)
Query: 599 AQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLD 658
Q+ EM AEAA+ AKSQF+A +SHEIRTPMNG+LGM ++ +DTEL Q D
Sbjct: 155 GQMRRAEAEMRRALDSAEAANAAKSQFIANMSHEIRTPMNGILGMTELALDTELTPTQRD 214
Query: 659 YAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIE 718
Y +S + L++++ND+LD A++++G++ E +PF L +++ L +A KG+E
Sbjct: 215 YLNIVKSSAETLLTILNDILDFARLDAGKMHIEAIPFDLSELVAETLKAIGMRARNKGLE 274
Query: 719 LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778
L + +P +GDPGR RQ++ NL N+IKFT G I V VRS + +
Sbjct: 275 LVCDLPADLPRQSLGDPGRLRQVLMNLCDNAIKFTP-TGEIEVK------VRSSPNRDPR 327
Query: 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTG 838
L+ +Q +TV DTG
Sbjct: 328 -----LDDIQ-------------------------------------------ITVRDTG 339
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
+GIP IF F QAD++ +R +GGTG+GLSIS L+ELMGG+I S G GS F
Sbjct: 340 IGIPAAKLAEIFEAFSQADATITRQFGGTGLGLSISARLLELMGGQIRVESREGQGSAFH 399
Query: 899 FTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
T+ E ++ P + R RALV+DD I E L+ + A
Sbjct: 400 LTLPLARIEPSASSPPPSPW-------RHKRALVVDDHPINRETLAGWLRHWGLTTLEAG 452
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
S Q A + L+ + +S P L+L+D + D + GL L L + GL I++ +
Sbjct: 453 SGQEALA-LARSGQSSRTP-FDLLLLDARMPDMD-GLELAARLVAE----GL-IAQG--R 502
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKPSLG 1076
+ +L+ S + + GI LTKP LI DP S + P
Sbjct: 503 MVMLSCGGSPGNAQRGQDLGIAATLTKPATPRELIETLTRLLDPMVSAASPPPQTPPPQD 562
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
+G +IL+V+DN +N+++A L++ G VT + G+ AVD L P FD MD+QM
Sbjct: 563 E-RQGARILLVEDNPINQKLARKLLERWGHEVTLAENGKIAVD-LFEPSAFDLVLMDMQM 620
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P MDG +AT +IR E G PI+AMTA+V+ + +C++
Sbjct: 621 PVMDGIEATRRIRDKER-------------------GSARTPIVAMTANVMASDRARCLE 661
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GMD+++ KP + L ++RF
Sbjct: 662 AGMDEHLPKPLRPKHLEEMISRF 684
>gi|381157615|ref|ZP_09866849.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380881478|gb|EIC23568.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1502
Score = 272 bits (696), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 196/639 (30%), Positives = 316/639 (49%), Gaps = 104/639 (16%)
Query: 589 HIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM 648
H+ A+ R N E++ + +AE A AKS+FLA +SHEIRTPMN V+ + ++ +
Sbjct: 703 HLLAIALTR----HNRDKELIVARHKAEEATRAKSEFLANMSHEIRTPMNAVINLSRLAL 758
Query: 649 DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLF 708
T+LDA Q DY + SG++L+ +IND+LD ++IESG++ + VPF L D++ +V +
Sbjct: 759 KTDLDAQQRDYIEKVLRSGENLLGIINDILDFSRIESGKMALDAVPFRLIDLISDVADVI 818
Query: 709 SSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD 768
+ KA+++ +E+ + + ++ GD R RQ++ NL+ N++KFT L +
Sbjct: 819 TVKADERELEVLFDIPP-LERLLFGDALRLRQVLINLLNNAVKFT-----------LQGE 866
Query: 769 VRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRI 828
V +DV V SDKV
Sbjct: 867 VVLGIDV-----------VDCSSDKV---------------------------------- 881
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
+L V V D+G+GI + + R+F PF QADSS +R +GGTG+GLSISR L+ LMG E+
Sbjct: 882 RLDVFVCDSGIGISRKQRQRLFRPFEQADSSITRGFGGTGLGLSISRHLLGLMGAELSLE 941
Query: 889 SEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQ 948
S G GSTFSFT+ F E + D + + P + R L++DD + +V ++ L
Sbjct: 942 SALGEGSTFSFTLDFPLCEEHEADKETPEQRPQIDR----RILIVDDNQVACQVLQHMLG 997
Query: 949 RLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008
R A+ + + L + L+LID + E+ + + K
Sbjct: 998 RYGAKAAAASDGRQGIAALREAARAGC--PYDLLLIDYQM--PELDGIATF-------KQ 1046
Query: 1009 GLEISRNLPKIFLLATSISETDRDELKSD--GIVTLLTKPLR----LSVLIGCFQEDPES 1062
L+ + +PK + + ++ +K+ G LL KP+ VL+ P +
Sbjct: 1047 VLQDAEIMPKPMAVLVTAFSSEEVAIKARKLGFANLLEKPINPARLFEVLLDGGAGGPRA 1106
Query: 1063 SKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
Q R L ++G+++L+ +D +NR++A L+ G VT + GR A++ LT
Sbjct: 1107 RVAFQSGRPLAELDG-IRGQRVLLAEDQDINRQIATELLESIGLRVTTANDGREALEHLT 1165
Query: 1123 P-PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILA 1181
P FD MDLQMP MDGF+AT QIR + +PI+A
Sbjct: 1166 AEPDAFDLVLMDLQMPVMDGFEATRQIR--------------------ADARWAELPIVA 1205
Query: 1182 MTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
MTA + A ++C+ GM+D+++KP + + L+ A+ R+
Sbjct: 1206 MTAHAMSAERQRCLAAGMNDHLAKPIDIDALHAALVRWI 1244
>gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
HAW-EB4]
gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
HAW-EB4]
Length = 1761
Score = 272 bits (696), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 185/623 (29%), Positives = 305/623 (48%), Gaps = 113/623 (18%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ + K A+AA+ AKS FLA +SHEIRTPMN ++GM Q+ + TEL+ Q +Y
Sbjct: 1021 EELKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELNRKQQNYVLKIDR 1080
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
+ K L+ +IND+LD +KIE+G+L+ E VPF L +L+++ +FS KA K +EL V+
Sbjct: 1081 ASKSLLGIINDILDFSKIEAGKLDIESVPFQLDTLLEDLSDMFSVKATDKRLELLFAVAP 1140
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV----HLADDVRSKVDVKDKVLE 781
+P + GDP R Q++ NL+ N+IKFT+ +G + +S+ + DD+ + V+D +
Sbjct: 1141 NIPRQLQGDPLRLSQVLINLMSNAIKFTE-QGEVLLSISQLERIEDDIVLRFSVRDNGI- 1198
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
G R + +++F D + T
Sbjct: 1199 ------------------GLTEEQRERLFKSFSQADTSTT-------------------- 1220
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
R YGGTG+GL+IS+ LVELMGGEIG S+ G GS+F F+V
Sbjct: 1221 --------------------RKYGGTGLGLAISKQLVELMGGEIGVESQFGNGSSFYFSV 1260
Query: 902 TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ 961
L K E G+R LV DD + ++ R L+ + V S
Sbjct: 1261 KLKVANNQLLKVK--------REIEGMRILVADDNATARDIMRTTLESMGFKVDAVKSGA 1312
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFL 1021
A + C + P + LID W ++ M + + L + PKI +
Sbjct: 1313 EAIEH----CQHTDYP---VALID---W------LMPEMNGIEAAQKILSGKEHPPKILI 1356
Query: 1022 LATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH---- 1077
++ + ++++ I + +TKP+ S L+ + + +RK +
Sbjct: 1357 VSAHANAEFIEQVEHSDIASYITKPISASRLLDGIMSSLGQNGAMVVRRKGSDISQELLL 1416
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
L+GK++L+V+DN +N+ VA L++ G +++ + G+ A++KL +FD MD QMP
Sbjct: 1417 QLQGKRVLLVEDNDMNQEVATEFLEQVGVVLSIAENGQVALEKLA-TQSFDLVLMDCQMP 1475
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG+QAT ++R + GL +P++AMTA+ + E C++
Sbjct: 1476 VMDGYQATRELRKMP--------------------GLEKLPVIAMTANAMAGDKEMCLRV 1515
Query: 1198 GMDDYVSKPFEDEQLYTAVARFF 1220
GM+D+++KP E +LY+ + ++
Sbjct: 1516 GMNDHIAKPIEVARLYSTLLQYL 1538
>gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|378707231|ref|YP_005272125.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
gi|418024379|ref|ZP_12663362.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
gi|353536339|gb|EHC05898.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
Length = 1786
Score = 272 bits (695), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 193/618 (31%), Positives = 307/618 (49%), Gaps = 103/618 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K +A+AA AK FLA +SHEIRTPMN ++GM Q+ + TELD Q +Y + + + L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+IND+LD +KIE+G+L+ + VPF L +L+++ +FS KA K IEL V+ VP +
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GD R Q++ NL+ N+IKFT+ +G + +S+ L V+ +
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTE-RGEVLLSLSL---------------------VEQQD 1190
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
D V L +V D+G+G+ + Q ++F
Sbjct: 1191 DDVV----------------------------------LRFSVRDSGIGLTEQQQAKLFK 1216
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--TEGERN 909
F QAD+ST+R YGGTG+GL+I + LVELMGG+IG S+ G GSTF FTV ++G++
Sbjct: 1217 SFTQADTSTTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKLHISDGQKL 1276
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
L+ E G+ LV+DD + ++ L+ + V S + A S
Sbjct: 1277 VLE----------QELEGMSVLVVDDNATARDIMCTTLESMGFRVDTVRSGEEAIS---- 1322
Query: 970 TCSTSVLPQLALVLID---KDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
C +L + LID ++ E + + Q + S PKI +++
Sbjct: 1323 RC---LLQAYEVALIDWKMPNMDGLETARQIQLQAQSQSQSQSQPQSHPQPKILMVSAHA 1379
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS----LGHLLKGK 1082
+++ + ++KP+ S L+ L +R+ L L+GK
Sbjct: 1380 DHEFLTQIEQLALAGYISKPISASRLLDGIMNAIGREGILPVRRRTEELAPQLLLPLQGK 1439
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+IL+V+DN +N VA L++ G I++ G+ A+DKL+ H FD MD QMP MDG+
Sbjct: 1440 RILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGY 1498
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
QAT IR L ++P++AMTA+ + + C++ GM+D+
Sbjct: 1499 QATQAIRKRPE--------------------LANLPVVAMTANAMAGDRDMCIRAGMNDH 1538
Query: 1203 VSKPFEDEQLYTAVARFF 1220
++KP E LY + ++
Sbjct: 1539 IAKPIEVNVLYQTLLKYL 1556
>gi|301057605|ref|ZP_07198685.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300448329|gb|EFK12014.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 828
Score = 272 bits (695), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 199/628 (31%), Positives = 298/628 (47%), Gaps = 110/628 (17%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E K RAE A KS FLA +SHEIRTPMN V+G ML+DT+L Q DYA TA SG
Sbjct: 265 LIEAKERAETASQTKSHFLANMSHEIRTPMNAVIGFTDMLLDTDLTDDQRDYAMTAKKSG 324
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+SL+ND+LD +KIE+G L E + F + +V + + K +E+ +V V
Sbjct: 325 ESLLSLLNDILDFSKIEAGELNFEKIDFDPELLSYDVCEVIRPRVESKPVEILCHVGADV 384
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P V GDPGR+RQ++ NL+ N+ KFT+ G I E SL+
Sbjct: 385 PSFVKGDPGRYRQVLVNLMSNATKFTE-SGEI---------------------ELSLDVE 422
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
++D++ K TV DT +GIP +
Sbjct: 423 AEEADRI----------------------------------KFHATVRDTAMGIPEDKLS 448
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
IF PF QAD S +R YGGTG+GL++ R L M G++ SE GS F FT + E
Sbjct: 449 LIFDPFQQADGSMTRKYGGTGLGLTVCRQLSRFMDGDVWVESEVNKGSIFHFTAWLDKAE 508
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
+ + + R R LV+DD +L+ LE+ H+ +A L
Sbjct: 509 QIDTAGRLKPLT-----LRDRRILVVDD----------NLRNLEILTHILEFAGMAVVAL 553
Query: 968 SDTCSTSVLPQLALVLIDKDVWD---KEIGLVLHYMLKQQRRKGGLEIS-RNLPKIFLLA 1023
+ +V+P L L + +D +I + + + RR E+ R+LP I L
Sbjct: 554 KN--GEAVVPILRKALAAGNPFDLCISDIQMPVMSGYEVARRVRNEEVPLRDLPMIAL-- 609
Query: 1024 TSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPSLGHLL 1079
+S E + K G L+KP+ L ++ Q +S+ + RKK + L
Sbjct: 610 SSFMEREAGLCKEAGFDGFLSKPIHREKLLQMMARLIQTVKSTSECFEGARKKIVTQYSL 669
Query: 1080 KGKQ-----ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK-LTPPHNFDACFMD 1133
+ IL+ +DN VN+++A L K G V + G+ A++K + P +FD FMD
Sbjct: 670 LEEMKHSVCILLAEDNFVNQKLARMMLTKAGYRVVVANNGKEALEKYMASPDDFDLIFMD 729
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMPEMDG AT IR G +PI+AMTA ++ E+
Sbjct: 730 VQMPEMDGLIATKTIRE---------------------KGFDAIPIVAMTAHAMKGDREK 768
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARFFM 1221
C++ GMDDY++KP + E ++ + ++ +
Sbjct: 769 CLEAGMDDYITKPIKREVVFEVLEKWVL 796
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV----DKLTPPHNFDACFMDL 1134
L+ ++ILVVDDN+ N + L+ G V + G A V L + FD C D+
Sbjct: 521 LRDRRILVVDDNLRNLEILTHILEFAGMAVVALKNGEAVVPILRKALAAGNPFDLCISDI 580
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP M G++ ++R+ E V L +P++A+++ ++ C
Sbjct: 581 QMPVMSGYEVARRVRNEE-------------------VPLRDLPMIALSS-FMEREAGLC 620
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+ G D ++SKP E+L +AR +
Sbjct: 621 KEAGFDGFLSKPIHREKLLQMMARLIQT 648
>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
DSM 8797]
gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
DSM 8797]
Length = 1362
Score = 272 bits (695), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 198/633 (31%), Positives = 299/633 (47%), Gaps = 95/633 (15%)
Query: 588 GHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
G +F A I+ I + E+ + K AEAA AKS FLAT+SHEIRTPMN V+GM ++L
Sbjct: 655 GFLFAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIGMTELL 714
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
+DT+L++ Q +Y SG+ L+S+IND+LD +KIE+GR + E PFHL + L + +
Sbjct: 715 LDTDLNSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLRENLGDTMRS 774
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
+ +A+ K +ELA ++ VP+ +VG+ + Q + V+L
Sbjct: 775 LAVRAHHKHLELAFHLDADVPDT--------------IVGDRFRLRQ------IIVNLVG 814
Query: 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR 827
N+++ E +LD +
Sbjct: 815 -----------------NAIKFTE-------------------EGEIVLDVNYDFQSKNE 838
Query: 828 IKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF 887
++L V DTG+GIP + Q +IF F Q D S +R + GTG+GL+I+ L+E+MGG+I
Sbjct: 839 LQLHFVVRDTGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAIASRLIEMMGGKIWV 898
Query: 888 VSEPGTGSTFSFTVTF--TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRY 945
SE G GS F FT F TE E + +P + +E GLR L++DD ++
Sbjct: 899 NSEVGKGSEFHFTARFELTEEEVPANEPLLK------AELDGLRVLIVDDNLTNCQILEE 952
Query: 946 HLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005
L M N A + + + L LV + V D G + +KQ
Sbjct: 953 MLGSWNMQTQSINRGSDALDVMHASQQSKHPFDLVLVDANMPVMD---GFSVAKAIKQDS 1009
Query: 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKK 1065
G I ++ +S + + K GI L KPL+ S L E +
Sbjct: 1010 TLGS-------AVIMMITSSDRQGEISRCKELGIAAHLIKPLKQSELFNSIAETLGMNGT 1062
Query: 1066 LQQKRKKPS--LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP 1123
Q + + L + +IL+ +D++VN+++A LK G + V G AV++
Sbjct: 1063 PQHDMRTATADLAQRIPPLKILLAEDSLVNQKLALALLKPQGHEIAVVLNGSDAVNE-RK 1121
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
FD MD+QMPEMDG +AT QIR E E E HVPI+AMT
Sbjct: 1122 NREFDLILMDVQMPEMDGLEATRQIREYEQETGE------------------HVPIIAMT 1163
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
A ++ E+C++ GMD YVSKP +L++ +
Sbjct: 1164 AHAMKGDRERCLEAGMDGYVSKPVRVRELFSTI 1196
>gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1547
Score = 272 bits (695), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 200/638 (31%), Positives = 311/638 (48%), Gaps = 102/638 (15%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+A+AA AKS+FLA +SHEIRTPMNGV+GM +L++T+L+ Q YA+T +SG+ L++L
Sbjct: 834 QADAASRAKSEFLANMSHEIRTPMNGVIGMTGLLLETDLNETQRRYAETVRSSGQALLAL 893
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
+ND+LD +KIESG+LE E + F L D LDN S+ + KA +KG+E VP+ +IG
Sbjct: 894 LNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAEEKGLEFICSADPDVPDNLIG 953
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD-VRSKVDVKDKVLEKSL--NSVQHK 790
DPGR RQI+TNLVGN++KFT+ +G + V V + + VRS+ + +L S+ +
Sbjct: 954 DPGRIRQILTNLVGNAVKFTE-RGEVVVRVSIQESGVRSQESQEFCMLHFSVRDTGIGIP 1012
Query: 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850
+DKV + F VD
Sbjct: 1013 ADKVGDLFQSFSQVD--------------------------------------------- 1027
Query: 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNS 910
+S +R +GGTG+GL+IS+ L E+MGG++G S G G+TF FT+ R +
Sbjct: 1028 -------ASITRKFGGTGLGLAISKQLAEMMGGDVGVDSVEGQGTTFWFTI------RLA 1074
Query: 911 LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDT 970
L + VP ++ +RAL++DD + E+ L M A A L
Sbjct: 1075 LAGTAEAEVPVPADLLDVRALIVDDNATNREILMTRLLGWGMRPDEAKDGPTALGRLYTA 1134
Query: 971 CSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
+ LA++ + D E ++ + R L+ R + +++++ + D
Sbjct: 1135 LAEDDPYHLAIIDMQMPGMDGE------FLGRTIRADQKLQDVR----LVMMSSAGMQGD 1184
Query: 1031 RDELKSDGIVTLLTKPLRLSVLIGCFQ-----EDPESSKKLQQKRKKPSLGHLL----KG 1081
+K L KPLR L C ++P+ R++ S + +
Sbjct: 1185 ARRMKDIWFAAFLAKPLRHDELFDCLSLVMAGDEPQDLVTRHSAREEKSRSGKIDFSDRK 1244
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL-TPPHNFDACFMDLQMPEMD 1140
+IL+ +DN+ N++VA LK G V G A+ L T P +D MD+QM EMD
Sbjct: 1245 ARILLAEDNITNQQVALAMLKNFGLSADAVANGLEAIKALKTVP--YDLVLMDVQMLEMD 1302
Query: 1141 GFQATWQIRHLEN-----EINEQIASGESS-------------AEMFGNVGLWHVPILAM 1182
G AT +IR E E+ +Q ES + + + +PI+AM
Sbjct: 1303 GLAATRRIRAAEIRGRELEVRDQRLKSESQNSSIPESLNPLIPQSLNSRIPEFRIPIIAM 1362
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
TA ++ E+CM+ GMDDY++KP E +L + ++
Sbjct: 1363 TAHAMRGDRERCMEAGMDDYLAKPVEPGRLSQVLEKWL 1400
>gi|90022133|ref|YP_527960.1| ribosomal-protein-alanine acetyltransferase [Saccharophagus degradans
2-40]
gi|89951733|gb|ABD81748.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
2-40]
Length = 1109
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 209/654 (31%), Positives = 314/654 (48%), Gaps = 127/654 (19%)
Query: 594 AINRIAQVENDYH-EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
+ N + Q Y E++ K AE++ AKS+FLA +SHEIRTPMNGVLGML +++++ L
Sbjct: 390 SFNELIQSRKYYELELLAAKNEAESSSRAKSEFLACMSHEIRTPMNGVLGMLGLVLNSSL 449
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
Q A +SG+ L+S+IND+LD +K+E+G+LE E + F H +L +V+ F+ A
Sbjct: 450 TPEQERKLLLAQSSGQSLLSVINDILDYSKVEAGKLELEHLDFDPHRLLSDVVQSFNYSA 509
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+KGIEL + +V+ GDP R RQII NL+ N++KFT +G I V R+K
Sbjct: 510 QEKGIELVLDDIGLGGKVLRGDPSRLRQIINNLLSNALKFTS-QGEIIV--------RAK 560
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
+D E G +L
Sbjct: 561 LD-----------------------------------------------SEINGLNQLRC 573
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
+V DTG+GIP + +F F Q DSST+R YGGTG+GLSI + L +MGG+I VSE G
Sbjct: 574 SVTDTGIGIPSDKISGLFDSFTQVDSSTTRRYGGTGLGLSICKMLTRIMGGDIFVVSEVG 633
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM 952
G+ F F V G +D S+ GL L++DD +V L +
Sbjct: 634 KGTRFDFVVHVETGSCLPVDNAE-------SDVTGLNVLLVDDNLTNLDVISGQL--ISW 684
Query: 953 AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVL--------HYMLKQQ 1004
+HV + P+ ALVL+ +V D LVL + + +
Sbjct: 685 GIHV---------------TKVAGPEQALVLV-AEVQDTVFDLVLMDCHMPNINGIDLAE 728
Query: 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSK 1064
R +G I N + +L++S R ++ G+V L KP+ L Q + K
Sbjct: 729 RIQGSPCIKPN--SVIILSSSADMASRFHMQEVGVVGCLMKPVSAPYLHQAIQYFIQIKK 786
Query: 1065 KLQQKRKKPSLGHLLKGK---------------QILVVDDNMVNRRVAEGALKKHGAIVT 1109
+Q+ P+L + +ILVV+DN+VN++V G L+ G T
Sbjct: 787 SNKQQFITPALLESVHATTESTANPNIVWGDNVRILVVEDNLVNQQVIAGILEDFGLAFT 846
Query: 1110 CVDCGRAAVDKL---TPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSA 1166
VD G+ A+ L T + FMD QMP +DG+ AT QIR + A+GE
Sbjct: 847 LVDDGQQAISALKENTGDLRYHFVFMDCQMPVLDGYNATKQIR--------EGAAGEECK 898
Query: 1167 EMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
VPI+A+TA+ +Q ++C++ GM+DYV+KP + +++ A+ +
Sbjct: 899 ---------IVPIVALTANAMQGDRDKCLRAGMNDYVAKPVDADEVRLALVSWL 943
>gi|427421169|ref|ZP_18911352.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425757046|gb|EKU97900.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 927
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 206/630 (32%), Positives = 308/630 (48%), Gaps = 91/630 (14%)
Query: 589 HIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM 648
H+ I +E E+ + A AA +KS FLA +SHEIRTPMNG+LGM +L+
Sbjct: 245 HVIQLKDLEINMLERREQEIAISRDEALAAAESKSNFLANMSHEIRTPMNGILGMSGLLL 304
Query: 649 DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLF 708
DT+L Q ++++T N LI++IND+LD +KIESG+L+ E PF L ++ L L
Sbjct: 305 DTDLTQQQRNFSETIWNCCNSLITIINDILDFSKIESGKLDLEECPFELRTCVEEALDLL 364
Query: 709 SSKANQKGIELAIYVSD-RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
+++A +KG+ELA Y++D P +GD R RQI+ NL+GN++KFT + G + V V
Sbjct: 365 AARAAEKGLELA-YIADLSTPNRFVGDVTRLRQILVNLIGNAVKFTHE-GEVLVKV---- 418
Query: 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR 827
+ L+KS S E+ K+ D ++ +
Sbjct: 419 --------RTTPLQKS-------------------------SIEDIKLKDISHAQGKESF 445
Query: 828 IKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF 887
+ L V+DTG+GIP + R+F F Q D+ST+R YGGTG+GLSIS+ L ELMGG +
Sbjct: 446 VTLHFDVQDTGIGIPTDKMDRLFKSFSQVDASTTRQYGGTGLGLSISKQLCELMGGNMTV 505
Query: 888 VSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVS-EFRGLRALVIDDKSIRAEVTRYH 946
S G GS FSF++ ++L + V D++ + + R L++DD + E+
Sbjct: 506 TSVVGEGSCFSFSIVV-----DALPTLENEQVSDIAHQLKDKRVLIVDDNATNREILTLQ 560
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
Q EM A S A LS C +S + ++D + + + GL L + ++ Q
Sbjct: 561 TQSWEMQPITAQSAYEALGILS--CQSS----FDVAILDMQMPEVD-GLTLAHKIRDQT- 612
Query: 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDP-- 1060
+ LP + L + E D L L KP++ S L+ F + P
Sbjct: 613 -----YGKKLPLVMLTSLGRPEVDPKALDKAKFSAFLNKPIKQSHLYDALVQVFSDQPIK 667
Query: 1061 -ESSKKLQQKRKKPSLG--HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
+ S QQ +L H L+ ILV +DN+VN+++ L K G V G A
Sbjct: 668 IQKSISAQQSGLDSTLAQSHPLR---ILVAEDNLVNQQLIRQWLDKLGYRSDIVGNGYEA 724
Query: 1118 VDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177
+D L +D MD+ MPEMDG AT +I E + H
Sbjct: 725 IDALK-RQPYDVILMDVHMPEMDGLTATEKI-----------------CEQWSTANRPH- 765
Query: 1178 PILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
I+A+TA ++ + CM GM DY+SKP
Sbjct: 766 -IVALTASAMKGDRDLCMAAGMHDYISKPI 794
>gi|428298374|ref|YP_007136680.1| PAS/PAC sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
gi|428234918|gb|AFZ00708.1| PAS/PAC sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
Length = 837
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 204/613 (33%), Positives = 295/613 (48%), Gaps = 110/613 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AEAA+ AKS FLA +SHEIRTPMNG++GM +L+DT L QLDY +T NSG L+
Sbjct: 303 KQAAEAANFAKSDFLAVMSHEIRTPMNGIIGMTNLLLDTSLKPEQLDYVETIRNSGDTLL 362
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +KIESG+LE E PF L ++ L L +S+A KGIEL + P +
Sbjct: 363 TIINDILDFSKIESGKLELEKHPFDLRVCVEEALDLLASQATAKGIELIYKLESHTPTQI 422
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGD R RQII NLV N++KFT D G I V++ + + + QH
Sbjct: 423 IGDITRLRQIILNLVSNAVKFTTD-GEILVTISTQQQISPE------------ENSQHDC 469
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+ L + DTGVGIP + R+F
Sbjct: 470 E-------------------------------------LQFAISDTGVGIPRDRLDRLFQ 492
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F Q D ST+R YGGTG+GL+I + L E+MGG + SE G GSTF FT + +
Sbjct: 493 AFSQVDVSTTRRYGGTGLGLAIGKRLSEIMGGRMWVESEEGKGSTFYFTAIL---QVHPA 549
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
P+++ + L L + + +R +T + LQ + + V + S + Y+ +
Sbjct: 550 SFNISHIEPELTNKKLL--LAVGNAKLRNCLT-WQLQNMGLDVKSSESSNMTLHYMQENS 606
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
Q+A++ ID + H L ++ R + R+L I L + +
Sbjct: 607 F-----QIAIIDIDSPDFH-------HINLTEKIR--AIPNQRDLTLIMLSSQGKQNLEH 652
Query: 1032 DELKSDGIVTLLTKPLR--------LSVLIGCF--QEDPESSKKLQQKRKKPS----LGH 1077
+ ++ L KPLR L V G + Q S+K L R +P H
Sbjct: 653 QPIATE-FTAFLQKPLRHYQLHNTLLQVARGIWSKQSGNCSTKILSYSRTEPQNLPVHDH 711
Query: 1078 LLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
K +IL+V+D +VN+++A L+K G + G AV K T +D FMD+
Sbjct: 712 KFAEKLPLKILLVEDGLVNQKIALKLLEKLGYQADVANNGLEAV-KATQKQLYDVVFMDV 770
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMPEMDG +AT QIR E+++Q I+AMTA+ ++C
Sbjct: 771 QMPEMDGLEATRQIR---KELSKQ------------------PQIIAMTANARPEDRQEC 809
Query: 1195 MKCGMDDYVSKPF 1207
+ GM+DY+SKP
Sbjct: 810 LNAGMNDYISKPI 822
>gi|345863660|ref|ZP_08815869.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345125209|gb|EGW55080.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 898
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 206/656 (31%), Positives = 317/656 (48%), Gaps = 129/656 (19%)
Query: 590 IFHAAINRIAQV--ENDYHEMMELKAR---------AEAADVAKSQFLATVSHEIRTPMN 638
+ A++N +A V + D E + AR A +A AKS+FLA +SHEIRTPMN
Sbjct: 190 LMAASVNDLANVMQQRDQRERDLIDAREALEVAYDEALSATRAKSEFLANMSHEIRTPMN 249
Query: 639 GVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698
GV+GM +L+D+ L Q A S + L+SLIND+LD KIE+GRL+ E + F L
Sbjct: 250 GVIGMTSLLLDSPLSDEQHGRALIVKRSAESLLSLINDILDFTKIEAGRLDLEIIDFDLG 309
Query: 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGH 758
++D+ + + +A +KG+EL + + GDPGR RQI+TNLVGN++KFT+ +G
Sbjct: 310 ALMDDFAATMAFRAEEKGLELVCPANPVLHHWYQGDPGRIRQILTNLVGNALKFTE-QGE 368
Query: 759 IFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDN 818
+ V L + + D+ TL F V
Sbjct: 369 VSVRYDL---------------------IAEEGDR---TLLRFRV--------------- 389
Query: 819 TNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLV 878
DTG+G+ +E Q +F F QAD ST+R YGGTG+GLSIS+ LV
Sbjct: 390 ----------------SDTGIGLSVEQQEHLFERFTQADGSTTRQYGGTGLGLSISKQLV 433
Query: 879 ELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSI 938
ELMGGEIG S G GSTF FT+ E + K S+ R + LV+DD +
Sbjct: 434 ELMGGEIGVESSLGEGSTFFFTLDLANAEVQTPPRK-------TSDLRSEKVLVVDDNAT 486
Query: 939 RAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD-KEIGLVL 997
++ L ++ +A S A L D + +AL+ + D ++G +
Sbjct: 487 NRQLLDEVLTVWQVEHDLAASGPAALQALHDAAGLDMPYTIALLDMQMPGMDGAQLGASI 546
Query: 998 HYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057
H K L +R + LL + D ++ G L+KP+ S L
Sbjct: 547 HSDKK-------LAATRTV----LLTSQGRRGDAKQMHEAGFFGYLSKPINQSELYNALL 595
Query: 1058 E------DPE------SSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHG 1105
+ D E +++++QQ + +LVV+DN+ N+ VA+G L+K G
Sbjct: 596 QVAGITGDDERLITRYTAREIQQFNAR-----------VLVVEDNVTNQAVAQGMLEKFG 644
Query: 1106 AIVTCVDCGRAAVDKLTP-PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGES 1164
+ V G+ A+ L P +D FMD QMP MDG+ AT +IR ++ + +
Sbjct: 645 VHIDLVANGQEAITALEQLP--YDLVFMDCQMPVMDGYDATRRIRDPQSSVKDH------ 696
Query: 1165 SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
++P++AMTA+ +Q ++C++ GMDD+++KP + +L A+ ++
Sbjct: 697 -----------NIPVIAMTANAMQGDRDKCIEAGMDDHIAKPVDPRKLRRALEQWL 741
>gi|373456904|ref|ZP_09548671.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
gi|371718568|gb|EHO40339.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
Length = 805
Score = 271 bits (693), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 199/657 (30%), Positives = 315/657 (47%), Gaps = 105/657 (15%)
Query: 569 VPWTAINASIGVVVITLLVGHIFHAAINRIAQV-ENDYHEMMELKARAEAADVAKSQFLA 627
+P ++ + ++VI LL G I AI E E+++ + AEAAD+AKS FLA
Sbjct: 230 LPSVPLHLNYPLIVIHLLFGIIGTLAIVFFGIFNERKQRELIKAREAAEAADIAKSDFLA 289
Query: 628 TVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR 687
++SHEIRTPMNGV+GM +LM T L Q +Y QT S + L+++IND+LD +KIESG+
Sbjct: 290 SMSHEIRTPMNGVMGMSSLLMQTPLTPEQREYVQTIRISAESLLTIINDILDFSKIESGK 349
Query: 688 LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVG 747
++ EF PF L ++ L L + KA +K ++L ++ VP + D R RQ++ NL+
Sbjct: 350 MDLEFQPFELKTCIEEALDLVAPKAAEKNLDLVYFIEPDVPTYIESDITRLRQVLVNLIN 409
Query: 748 NSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRW 807
N++KFTQ KG +F++V V+++ V + + + K +K+++
Sbjct: 410 NAVKFTQ-KGEVFINVGRIAQDGDTVELQFSVKDTGIGIAEDKINKLFDA---------- 458
Query: 808 KSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGT 867
F D++ T R YGGT
Sbjct: 459 -----FTQADSSTT----------------------------------------RKYGGT 473
Query: 868 GIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927
G+GL+IS+ LVE+MGG I S+ G GSTF FT+ +SL K+ + E G
Sbjct: 474 GLGLAISKRLVEMMGGRIWVTSKVGKGSTFYFTIKAKAA--SSLPKKYLNI--KIPELTG 529
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
+ LV+DD + + QR M V A + + A + + + L ++D
Sbjct: 530 VHVLVVDDNKTNRRILKLQCQRWGMKVQEAATAREALEIMKNGT------EFDLAILDMQ 583
Query: 988 VWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPL 1047
+ + + G+ L +++ K LP I L +S+ + + + K++ LLTKP+
Sbjct: 584 MPEMD-GVELAAEIRKLYSK------EELPLIML--SSLGKPPKLKEKAEMFDALLTKPV 634
Query: 1048 RLSVLIGCFQEDPESSKKLQQK--RKKPSLGHLLKGK---QILVVDDNMVNRRVAEGALK 1102
+ S L E +Q+K + +L K +IL+ +DN +N+++ L
Sbjct: 635 KQSQLYNTLLEALNRKPSVQEKWSASEATLDETFARKYPLRILLAEDNSINQKLGLKVLA 694
Query: 1103 KHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQI--RHLENEINEQIA 1160
K G G ++ L +D FMD+QMPEMDG +AT QI ENE
Sbjct: 695 KMGYTADLAANGLEVLEALK-QQRYDLIFMDVQMPEMDGLEATRQIIQNFPENE------ 747
Query: 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
I+AMTA+ ++ E+C+ GMDDYVSKP + E++ +A
Sbjct: 748 ---------------RPVIIAMTANAMKGDREKCLNAGMDDYVSKPIDLEEIQAVIA 789
>gi|359436217|ref|ZP_09226335.1| sensor protein [Pseudoalteromonas sp. BSi20311]
gi|358029077|dbj|GAA62584.1| sensor protein [Pseudoalteromonas sp. BSi20311]
Length = 1111
Score = 271 bits (693), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 203/657 (30%), Positives = 318/657 (48%), Gaps = 115/657 (17%)
Query: 571 WTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVS 630
WT N ++ I L+G + H++ RI E+++ K AE A +AKS+FLA++S
Sbjct: 560 WTQ-NEEGFLIAIGALIGSL-HSSEQRI----ETEAELVKAKEAAEQAVIAKSEFLASMS 613
Query: 631 HEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEP 690
HEIRTPMNGVLGML ++ T LD Q + + A +S + L+ +IND+LD +KIE+G+L+
Sbjct: 614 HEIRTPMNGVLGMLNLIQTTSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDI 673
Query: 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSI 750
E + F+L +L ++ F+ KA +L + + ++ DP R RQI+ NL+ N++
Sbjct: 674 ENIQFNLPKLLGEIVESFALKAESNNTQLILDTTHVSTSEIVCDPNRLRQILNNLIANAV 733
Query: 751 KFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810
KFTQ+ G + V+ +
Sbjct: 734 KFTQN-GQVLVTATIE-------------------------------------------- 748
Query: 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIG 870
K LDNT T+E + DTG+GI L+ Q ++F F QAD+ST+R YGGTG+G
Sbjct: 749 ---KTLDNT-TLE--------CAIIDTGIGISLDKQKQLFDSFTQADASTTRQYGGTGLG 796
Query: 871 LSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRA 930
L+I + L ELMGGE+ S P GSTF+F+V T + +D Q + D + R
Sbjct: 797 LAIVKQLCELMGGEVSVNSLPNEGSTFAFSVNIT----SVID---QAFDLDCQHIQAKRI 849
Query: 931 LVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD 990
L++D+ + A +T L V + +Y+S+ T P +A +ID +
Sbjct: 850 LIVDNSEMNATITEKQLMLWGADVSAVCDYEEVEAYISNHQQTP--PDVA--IIDSSFLE 905
Query: 991 KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRL- 1049
V H L+ ++ K LE S L+ +S + D L+ KPL
Sbjct: 906 P----VAH--LQAEKLKHFLEKSH-----VLIMAPMSSSKSSLFYGDKETALIFKPLTAI 954
Query: 1050 ----SVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHG 1105
+++ G E P+ + K + GH +L+V+DN VN+ VA LK+
Sbjct: 955 DLYDTLVKGTLAEQPKEVELSAINTPKKAKGH------VLLVEDNKVNQVVAGALLKQAE 1008
Query: 1106 AIVTCVDCGRAAVDKL--TPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163
+ G A+ KL + + MD QMP MDG+QAT IR E +A E
Sbjct: 1009 LTFDIAEDGEDALTKLNQATANTYQLILMDCQMPIMDGYQATMAIR-------EGLAGQE 1061
Query: 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ A +PI+A+TA+ + E+C+ GM+DY+SKP + ++ + ++
Sbjct: 1062 NRA----------IPIIALTANAMHGDKEKCLNAGMNDYLSKPLDGPAMHAKLQQWL 1108
>gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella
piezotolerans WP3]
Length = 1771
Score = 271 bits (693), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 196/620 (31%), Positives = 303/620 (48%), Gaps = 108/620 (17%)
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
A I + Q+ N E+ + K A+AA AKS FLA +SHEIRTPMN ++GM Q+ + TEL
Sbjct: 1022 ANITSLKQISN---ELKQAKDSADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1078
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
D Q +Y Q + K L+ +IND+LD +KIE+G+L+ E V F L +L+++ +FS KA
Sbjct: 1079 DKKQQNYVQKIDRASKSLLGIINDILDFSKIEAGKLDIESVSFQLETMLEDLSDMFSVKA 1138
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
K +EL V+ +P RQ L G+ ++ +Q V ++L ++
Sbjct: 1139 ADKQLELLFAVAPNIP----------RQ----LEGDPLRLSQ------VLINLMNNAVKF 1178
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
D + +L S++ ++ D I L
Sbjct: 1179 TDQGEVLL--SISQLERVDDA----------------------------------ITLRF 1202
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
+V D G+G+ + + ++F F QAD+ST+R YGGTG+GL+I + LVELMGGEIG S+ G
Sbjct: 1203 SVRDNGIGLTEDQRNKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFG 1262
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM 952
GSTF FTV F + N L Q E G+R LV DD + ++ R L+ +
Sbjct: 1263 NGSTFFFTVKFKVAD-NKLIKAGQ-------ELEGMRILVADDNATARDILRTTLESMGF 1314
Query: 953 AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
V S A + C T+ P + LID W ++ M + +
Sbjct: 1315 EVDTVKSGAQAV----ERCKTTQYP---VALID---W------LMPEMNGLETSAAIIAN 1358
Query: 1013 SRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK 1072
S PKI +++ + D ++ GI +TKP+ S L+ + + +R
Sbjct: 1359 SETPPKILIVSAHANTELTDHIEGSGIAGYITKPISASRLLDGIMSSLGKNGAIPVRRTG 1418
Query: 1073 PSLGH----LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
+ LKGK+IL+V+DN +N+ VA L++ G ++ D G+ A++KL FD
Sbjct: 1419 VEVNQKLLTQLKGKRILLVEDNEMNQEVATEFLEQVGITLSIADNGQIALEKLA-TQTFD 1477
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD QMP MDG+QAT +R + L +P++AMTA+ +
Sbjct: 1478 LVLMDCQMPVMDGYQATQALRKIPE--------------------LSDLPVIAMTANAMA 1517
Query: 1189 ASNEQCMKCGMDDYVSKPFE 1208
E C++ GM+D+++KP E
Sbjct: 1518 GDKEMCLRVGMNDHIAKPIE 1537
>gi|395009774|ref|ZP_10393251.1| signal transduction histidine kinase [Acidovorax sp. CF316]
gi|394312173|gb|EJE49382.1| signal transduction histidine kinase [Acidovorax sp. CF316]
Length = 1007
Score = 271 bits (693), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 197/621 (31%), Positives = 296/621 (47%), Gaps = 114/621 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ +ARAE A KS FLA +SHEIRTPMN V+GM + + T+L Q +Y + S
Sbjct: 254 ELEVARARAEDASQMKSDFLANMSHEIRTPMNAVIGMSHLALTTDLSPRQRNYVEKIQRS 313
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G+ L+ LIND+LD +KIE+G+LE E V F L VLDNV +L K + KG+EL V
Sbjct: 314 GQHLLGLINDILDFSKIEAGKLEVETVDFDLRGVLDNVANLIGDKCSAKGLELMFDVDPA 373
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P+ + GDP R QI+ N N++KFT D G I V V +
Sbjct: 374 LPDDLRGDPLRLGQILVNYGNNAVKFT-DTGEIVVRV---------------------TT 411
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+Q +D + L V+DTG+G+ E Q
Sbjct: 412 LQRDADGLL----------------------------------LRFEVQDTGIGLTPEQQ 437
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F F QAD+ST+R YGGTG+GL+IS+ L LMGGE+G S PG GS F FT G
Sbjct: 438 SRLFRSFEQADTSTTRKYGGTGLGLAISKKLAGLMGGEVGVDSTPGLGSRFWFTARVGLG 497
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
P + +P+ + RG R LV+DD ++ L + AV A S A +
Sbjct: 498 T-----PSARPLLPE-PDLRGRRVLVVDDSEQARQILAGLLASMSFAVTTAASGSEAIAA 551
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL-----PKIFL 1021
D + ++A +D + D + G++ + L P + +
Sbjct: 552 ARDADAAGAPWEIA--FLDWKMPDMD----------------GVQTAAQLALLPHPPVPV 593
Query: 1022 LATSISETDR-DELKSDGIVTLLTKPLRLSVL-------IGCFQEDPESSKKLQQKRKKP 1073
+ T+ D L+ GI +LTKP+ S L +G Q+ + + ++ P
Sbjct: 594 IVTAHGREDVFRALEQAGIRLMLTKPVSPSQLFDTAIRALGGVQDTGLADRAAARRTSAP 653
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L + G ++L+VDDN +N++V L G +V + G+ A+D L +D MD
Sbjct: 654 DLAP-IHGARVLLVDDNDLNQQVGADLLGDAGLVVEVAENGQVALDMLHQRAPYDIVLMD 712
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP MDG AT ++R N +P+LAMTA+ + + +
Sbjct: 713 MQMPVMDGLTATRRLRE--------------------NPAWAGLPVLAMTANAMSSDRDS 752
Query: 1194 CMKCGMDDYVSKPFEDEQLYT 1214
C+ GM+ +V+KP + ++L++
Sbjct: 753 CLAAGMNGHVAKPIDPDELFS 773
>gi|398857234|ref|ZP_10612936.1| PAS domain S-box [Pseudomonas sp. GM79]
gi|398241281|gb|EJN26937.1| PAS domain S-box [Pseudomonas sp. GM79]
Length = 1463
Score = 271 bits (693), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 202/620 (32%), Positives = 304/620 (49%), Gaps = 124/620 (20%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS+FLA +SHEIRTPMN ++GM + + T+LD+ Q +Y + H S ++L+ +IND+LD
Sbjct: 736 AKSEFLANMSHEIRTPMNAIIGMSHLALRTDLDSRQRNYIEKVHRSAENLLGIINDILDF 795
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIE+GR+ E PF L DVLD+ ++ K KG+EL +P ++GDP R Q
Sbjct: 796 SKIEAGRMSLEQTPFRLEDVLDSFAAMIGLKTEDKGLELLFQTPPDLPTALLGDPLRLGQ 855
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
++ NL N+ KFT+ +G I V + +V V+D
Sbjct: 856 VLINLGNNAAKFTE-RGEIVVGME-------EVGVQDD---------------------- 885
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
R++L V DTG+G+ ++ R+F F QADSST
Sbjct: 886 --------------------------RVQLHFWVRDTGIGMTVDQCSRMFQSFSQADSST 919
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
+R YGGTG+GLSIS+ LVELM G I SEPG GSTF F V G + + P+ + +
Sbjct: 920 TRKYGGTGLGLSISKKLVELMDGHIWVESEPGVGSTFHFQVRL--GVQQGVQPR-RMFKA 976
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLA 980
D E G+R LV+DD + E+ + + V VA++ LA L+D LP
Sbjct: 977 D--ELLGMRVLVVDDNASAREILSGMARSFGLEVDVAHNGSLALRMLAD-AEHKALP-YD 1032
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKG--GLE-ISR-------NLPKIFLLATSISETD 1030
LVL+D W R G G+E +SR + P + ++ E
Sbjct: 1033 LVLMD---W---------------RMPGMDGVETVSRMHSASLMHTPSVIMVTAFGREEA 1074
Query: 1031 RDELKSDGI--VTLLTKPLRLSVLIGCF--------QEDPESSKKLQQKRKKPSLGHLLK 1080
R+E + GI +LTKP+ S L+ Q D + ++ QQ S L
Sbjct: 1075 REEAERQGIQLPVVLTKPVTPSSLLEAIGVVLGKGPQGDTRAGERSQQ---NASTLASLN 1131
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
G ++L+V+DN +N+ +A L+ G + G+ A+D L NFD MD QMP MD
Sbjct: 1132 GARLLLVEDNELNQELACELLESVGIRLKLARHGQEALDILAEDGNFDGVLMDCQMPVMD 1191
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G+ AT +IR + N +P++AMTA+ + EQ + GM+
Sbjct: 1192 GYTATQRIRQ-QPRFNA-------------------LPVIAMTANAMDGDREQALSSGMN 1231
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
D++SKP + + ++ +A++
Sbjct: 1232 DHISKPLDVDDMFATLAKWI 1251
>gi|381160280|ref|ZP_09869512.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380878344|gb|EIC20436.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1306
Score = 271 bits (693), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 197/636 (30%), Positives = 300/636 (47%), Gaps = 102/636 (16%)
Query: 590 IFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMD 649
IF + + V ND + + + AE A+ +KSQFLA +SHEIRTPMN V+G+ +L+
Sbjct: 539 IFKLSSGEVVAVYNDLTGIKQAQEAAERANRSKSQFLANMSHEIRTPMNAVIGLSDLLLH 598
Query: 650 TELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFS 709
T LD+ Q DY NS + L+ +IND+LD +KIE+G+LE E F L D+LD + +LF+
Sbjct: 599 TPLDSKQRDYLGKIRNSSRMLLGIINDILDYSKIEAGKLELESQSFRLEDLLDQMRTLFA 658
Query: 710 SKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV 769
+ A+ GIEL + P + GD R Q++TNL+ N+IKFT+ +G + +S+
Sbjct: 659 AAADASGIELIFELDIHHPRTLEGDALRLAQVLTNLLSNAIKFTE-RGQVTLSI------ 711
Query: 770 RSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIK 829
R + N +M +
Sbjct: 712 ------------------------------------REQGLSNAEM-------------Q 722
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
L V DTG+GI Q R+F F QADSST+R YGGTG+GL IS+ L+E MGGE+ S
Sbjct: 723 LTFAVRDTGIGIEPAQQERLFKAFSQADSSTTRKYGGTGLGLVISQRLIERMGGELRVES 782
Query: 890 EPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQR 949
PG GSTFSFT+T ++ P P G R LV+DD V R L+
Sbjct: 783 RPGQGSTFSFTITLPVTTEDATHPAAGLICP------GTRVLVVDDHEAARTVLRGILES 836
Query: 950 LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009
+ V A++ A + + A +L+D + + G+ L+ R G
Sbjct: 837 HDADVEEADNGLSAIQAVQRAEQANA--PFAFILMDWKMPGELDGIQTLERLQALRDSGE 894
Query: 1010 LEISRNLPKIFLLATSISETDRDELKSDGIV--TLLTKPLRLSVL---IGCFQEDPESSK 1064
L +P + +S ++D+L + L+KP+ L IG P+
Sbjct: 895 LR-QDAIPALI-----VSAYNQDDLAPHATLYRAFLSKPITPRALLDTIGQALSGPDDRA 948
Query: 1065 KLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
+ R P + +L+V+DN +N+ VA ++K + + GR AVD L
Sbjct: 949 DIPAARALPCFSE----QTVLLVEDNALNQEVACAIMEKTQVRIILAENGREAVD-LVSQ 1003
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
H D MDLQMP MDGF+A+ +IR E+ PI+A++A
Sbjct: 1004 HKVDLILMDLQMPVMDGFEASRRIRPHFPEL----------------------PIVALSA 1041
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
V++ + GM+D+++KP + L + + ++
Sbjct: 1042 AVMEEDRARAQAAGMNDHLAKPIDSHALISTLKKWL 1077
>gi|71281538|ref|YP_270817.1| sensory box histidine kinase/response regulator [Colwellia
psychrerythraea 34H]
gi|71147278|gb|AAZ27751.1| sensory box histidine kinase/response regulator [Colwellia
psychrerythraea 34H]
Length = 1683
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 195/623 (31%), Positives = 307/623 (49%), Gaps = 111/623 (17%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E K ++ A AKS FLA +SHEIRTPMN ++GM + + ELD +Y + +
Sbjct: 931 LLEAKRISDDASKAKSDFLANMSHEIRTPMNAIMGMSHLALGCELDRKPKNYVTKVYKAA 990
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+G+L+ E + F LHD ++ ++ KA +K +EL +S V
Sbjct: 991 ESLLGIINDILDFSKIEAGKLDIEVIEFSLHDTFADLANIIGLKAGEKNLELLFDISPDV 1050
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P + GDP R QI+ NL GN++KFT+ +G + +SV++ +V S
Sbjct: 1051 PVNLKGDPLRLNQILINLAGNAVKFTE-QGQVVISVNVVTNV----------------ST 1093
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
H D I L +V+D+G+G+ E Q
Sbjct: 1094 SHCDD-----------------------------------INLEFSVKDSGIGMDDEQQK 1118
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
++F F QADSST+R YGGTG+GL+IS+ LVELM G+I S+ G GS FSFT T +
Sbjct: 1119 KLFQSFSQADSSTTRKYGGTGLGLTISKKLVELMNGQIWLESKAGEGSCFSFTTTLQVSD 1178
Query: 908 --RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
N L + + ++ D R L++DD + +V L+ V ANS + A
Sbjct: 1179 VIDNRLVEQQKSFLADK------RILIVDDNLLALDVLSSILKSFHCHVVAANSGEEAIE 1232
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
+ T +++D ++ D + G+ ++++K Q + F+L TS
Sbjct: 1233 LVKQATLT-----FDFIMLDWNMPDLD-GIETYHIIKSQNNYQDNQ--------FILVTS 1278
Query: 1026 ISETDR--DELKSDGIVTLLTKPLRLSVLIGCFQE------DPESSKKLQQKRKKPSLGH 1077
+ + D+LK I ++L KP+ S F E D S + KR + +
Sbjct: 1279 NANDNEAVDQLKK-RINSVLVKPVTSS---SIFDEMMRLNGDEAYSNTREMKRDDELIQN 1334
Query: 1078 L--LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
L G +IL+V+DN +N+ +A LK+ V + G AV+K + H FD MDLQ
Sbjct: 1335 QQHLSGAKILLVEDNELNQELALELLKQSNIDVELAENGAIAVEKFSSRH-FDGILMDLQ 1393
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP MDGF AT IR ++ I PI+AMTA+ + + E+ +
Sbjct: 1394 MPVMDGFTATKIIRESDSSI----------------------PIIAMTANAMVSDKEKVL 1431
Query: 1196 KCGMDDYVSKPFEDEQLYTAVAR 1218
GM+D+++KP ++ +A+
Sbjct: 1432 ASGMNDHITKPINVNTMFATIAK 1454
>gi|336452021|ref|ZP_08622454.1| PAS domain S-box [Idiomarina sp. A28L]
gi|336281068|gb|EGN74352.1| PAS domain S-box [Idiomarina sp. A28L]
Length = 902
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 194/615 (31%), Positives = 301/615 (48%), Gaps = 91/615 (14%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
E +A AE A++AKS FLA +SHEIRTP+N ++GM + + TEL Q Y + +S +
Sbjct: 216 EARATAETANLAKSDFLANMSHEIRTPINAIVGMANLALKTELTDKQQRYVKVIDSSSQA 275
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+ +IND+LD +KIE+ +L E +PF L +VL + +F+ KA KG+E I + +P
Sbjct: 276 LLGVINDILDFSKIEANKLTIERIPFDLDEVLGTLADMFAYKAYDKGLEFIINLPANIPT 335
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
+++GDP R +Q++ NLV N+IKFT D G I VS L D RS+
Sbjct: 336 MLMGDPLRLQQVLINLVSNAIKFT-DDGEINVSCTLLD--RSE----------------- 375
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
DKV+ L + V+DTG+G+ E ++
Sbjct: 376 --DKVW----------------------------------LRIEVKDTGLGMTAEQTAKL 399
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
F F QAD+ST+R +GGTG+GL+ISR LV LM G+IG S GS F + E
Sbjct: 400 FQAFTQADTSTTRKFGGTGLGLTISRRLVTLMQGDIGVSSSANQGSNFFIELVLPLQE-- 457
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
S D Q + +S+ RG+R L +DD + E+ + L+ +M + +S + A +
Sbjct: 458 SQDSSHHQLL--MSQLRGVRVLAVDDNTSTREMLKETLRSYQMDAYTCHSGEQAMKQVIA 515
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
+ Q L+LID + + GL L +KQ+ + + + PK+ L +E
Sbjct: 516 AVAEGKPYQ--LMLIDWRLPGMD-GLSLVERIKQK-----IPVEQQ-PKMILATGYYAEE 566
Query: 1030 DRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP-SLGHLLKGKQILVVD 1088
++ + G +TKP + L S+K Q K S+ L+G +LVV+
Sbjct: 567 LAEKARQVGTDDFITKPYTTATLARVMTGAMFGSRKQQSAEKHAQSIPDTLQGAPLLVVE 626
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQI 1148
DN +N+ VA L HG +V + G AV + + + MD+QMP MDG+QA +I
Sbjct: 627 DNEINQHVAREMLTGHGFVVDIAENGEIAV-AMVQDNQYAIVLMDIQMPIMDGYQAAERI 685
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
R +PILAMTA+ + E+ + GM ++ KP +
Sbjct: 686 RQF--------------------YSYQQLPILAMTANAMSGDAEKSLAAGMQGHIPKPID 725
Query: 1209 DEQLYTAVARFFMSG 1223
+ L ++++ + G
Sbjct: 726 EALLLMQISKWAVPG 740
>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 1191
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 202/633 (31%), Positives = 311/633 (49%), Gaps = 105/633 (16%)
Query: 588 GHI-FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQM 646
GHI ++ + + Q + E+ + K AEAA+ AKS FLA +SHEIRTPMNGV+GM ++
Sbjct: 509 GHIVWNGFLTDVTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTEL 568
Query: 647 LMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLS 706
L+DT LDA Q +Y +S + L+ +IND+LD +KIE+G+++ E +PF+L + + L
Sbjct: 569 LLDTTLDAEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLK 628
Query: 707 LFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766
+A+ KG+E+ V+ VP ++GDPGR RQ++ N++GN+IKFT+ +G + +
Sbjct: 629 TVVLRAHDKGLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTE-RGEVVLR---- 683
Query: 767 DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG 826
+R +V K L H + V +T G P +LG
Sbjct: 684 --IRQEVASNGKPL-------LHLA--VSDTGIGIPA-------------------NKLG 713
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
I F F Q DSST+R YGGTG+GL+I LVE MGG I
Sbjct: 714 SI---------------------FDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIW 752
Query: 887 FVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH 946
S PG GS F FTV + D + GL LV+DD + EV
Sbjct: 753 VESTPGQGSVFHFTVALVK------DTSAPVETAALIRLDGLHILVVDDNLVNREVVCGM 806
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
L A+S + A +LS + + LVL+D + + + G +++
Sbjct: 807 LHSFGARTSQADSGRAALDWLSQQTAANAQVPCDLVLLDGQMPEMD-GFSTAPLVR---- 861
Query: 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKL 1066
GL +LP + LL+++ + D + GI L+KP+ L+ S L
Sbjct: 862 --GLPNCSSLPMV-LLSSAGMKGDGQRSRQVGIAGYLSKPIARQDLLQMV------SGVL 912
Query: 1067 QQKRKKPSL---GHLLKGKQ----ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD 1119
Q + +P + H ++ IL+V+D+ +N+++A L++ G V G+ A+D
Sbjct: 913 QMHKVRPEVLVTRHSIRDSHPVLDILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALD 972
Query: 1120 KLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPI 1179
L P +D MD+ MP MDG +AT IR NE +I PI
Sbjct: 973 ML-PKRPYDLILMDMMMPVMDGLEATRHIR--ANERGRRI------------------PI 1011
Query: 1180 LAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
+AMTA+ +++ C++ GMDDY++KP + E+L
Sbjct: 1012 IAMTANAMESDRNLCLEAGMDDYIAKPIKSEEL 1044
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 26/145 (17%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA------CFM 1132
L G ILVVDDN+VNR V G L GA + D GRAA+D L+ +A +
Sbjct: 785 LDGLHILVVDDNLVNREVVCGMLHSFGARTSQADSGRAALDWLSQQTAANAQVPCDLVLL 844
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D QMPEMDGF +R L N +P++ +++ ++ +
Sbjct: 845 DGQMPEMDGFSTAPLVRGLPN--------------------CSSLPMVLLSSAGMKGDGQ 884
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVA 1217
+ + G+ Y+SKP + L V+
Sbjct: 885 RSRQVGIAGYLSKPIARQDLLQMVS 909
>gi|398842018|ref|ZP_10599222.1| PAS domain S-box [Pseudomonas sp. GM102]
gi|398106973|gb|EJL96986.1| PAS domain S-box [Pseudomonas sp. GM102]
Length = 1463
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 202/617 (32%), Positives = 304/617 (49%), Gaps = 118/617 (19%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS+FLA +SHEIRTPMN ++GM + + T+LD+ Q +Y + H S ++L+ +IND+LD
Sbjct: 736 AKSEFLANMSHEIRTPMNAIIGMSHLALRTDLDSRQRNYIEKVHRSAENLLGIINDILDF 795
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIE+GR+ E PF L DVLD+ ++ K KG+EL +P ++GDP R Q
Sbjct: 796 SKIEAGRMSLEQTPFRLEDVLDSFAAMIGLKTEDKGLELLFQTPPDLPTALLGDPLRLGQ 855
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
++ NL N+ KFT+ +G I V + +V V+D
Sbjct: 856 VLINLGNNAAKFTE-RGEIVVGME-------EVGVQDD---------------------- 885
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
R++L V DTG+G+ E R+F F QADSST
Sbjct: 886 --------------------------RVQLHFWVRDTGIGMTAEQCSRMFQSFSQADSST 919
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
+R YGGTG+GLSIS+ LVELM G I SEPG GSTF F V G + + P+ + +
Sbjct: 920 TRKYGGTGLGLSISKKLVELMDGHIWVESEPGVGSTFHFQVRL--GVQQGVQPR-RMFKA 976
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLA 980
D E G+R LV+DD + E+ + + V VA++ LA L+D LP
Sbjct: 977 D--ELLGMRVLVVDDNASAREILSGMARSFGLEVDVAHNGSLALRMLAD-AEHKALP-YD 1032
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKG--GLE-ISR-------NLPKIFLLATSISETD 1030
LVL+D W R G G+E +SR + P + ++ E
Sbjct: 1033 LVLMD---W---------------RMPGMDGVETVSRMHSASLMHTPSVIMVTAFGREEA 1074
Query: 1031 RDELKSDGI--VTLLTKPLRLSVL---IG-CFQEDPESSKKLQQK-RKKPSLGHLLKGKQ 1083
R+E + GI +LTKP+ S L IG P+ + ++ ++ S L G +
Sbjct: 1075 REEAERQGIQLPVVLTKPVTPSSLLEAIGVVLGRGPKGDTRADERSQQNASTVASLNGAR 1134
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+V+DN +N+ +A L+ G + G+ A+D L NFD MD QMP MDG+
Sbjct: 1135 LLLVEDNELNQELACELLESVGIRLRLARHGQEALDILAEDGNFDGVLMDCQMPVMDGYT 1194
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT QIR + N +P++AMTA+ + E+ + GM+D++
Sbjct: 1195 ATQQIRQ-QPRFNA-------------------LPVIAMTANAMDGDRERALSSGMNDHI 1234
Query: 1204 SKPFEDEQLYTAVARFF 1220
SKP + + ++ +A++
Sbjct: 1235 SKPLDVDDMFATLAKWI 1251
>gi|359688370|ref|ZP_09258371.1| multi-sensor hybrid histidine kinase [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418748435|ref|ZP_13304727.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
gi|418756108|ref|ZP_13312296.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|384115779|gb|EIE02036.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|404275504|gb|EJZ42818.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
Length = 864
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 195/628 (31%), Positives = 304/628 (48%), Gaps = 124/628 (19%)
Query: 602 ENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQ 661
+N H++ + K AE A+ AKS+FLA +SHEIRTPMNGV+GM ++L+D+ L+ Q +YA+
Sbjct: 327 KNYEHDLKKAKEEAEKANRAKSEFLAMMSHEIRTPMNGVIGMTELLIDSNLNTEQKEYAE 386
Query: 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
SG+ L+++IND+LD +KIESG L E F + + ++ VL LF S+A QK I+L
Sbjct: 387 IIQKSGESLLNIINDILDYSKIESGTLSLEIREFSVIETIEEVLDLFRSRAAQKQIDLVY 446
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLE 781
Y+ VP+ ++ D R +QI+ NL+GN++KFT+ +G IF+S + SK++
Sbjct: 447 YLDPNVPDRILCDSLRLKQILINLIGNALKFTE-QGEIFLSAEV-----SKLE------- 493
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
K+Y L ++ DTG+GI
Sbjct: 494 ----------GKLYTIL---------------------------------FSIRDTGIGI 510
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
P E Q +F PF Q D+S++R YGGTG+GLSIS L+E+MGG I SE G+TFSF +
Sbjct: 511 PSEKQKELFQPFYQVDTSSTRKYGGTGLGLSISSRLIEMMGGIIWVESELNVGTTFSFYI 570
Query: 902 TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ 961
+ + K SE + L++DD ++ Y LQ L + A S +
Sbjct: 571 QVEGNNQAKIKEKAAN-----SELENKKVLILDDNPTNLKILAYQLQILGLITFSAKSKE 625
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK--- 1018
A + L ++P L +L Y L G+EI++ + K
Sbjct: 626 EALNLL----DLEIMPDLG---------------ILDYNLPGST---GIEIAQEMRKRNF 663
Query: 1019 ---IFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRK 1071
+ LL++S + E+ + L+KP++ ++ E +K +
Sbjct: 664 HFPLVLLSSSFLDPKDKEIAGELFAGELSKPVKKKDIERIVTEILAEGGSKAKANTRSSY 723
Query: 1072 KPSLGHLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
+L + +I+V +DN +N+ +A+ ++K G V G+ A+ L +
Sbjct: 724 LAGQKEILSSQFPFKIMVAEDNEINQTLAKRIIQKLGYEPLIVPNGKEALIALR-EKKIN 782
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP----ILAMTA 1184
FMD+ MPEMDG QAT IR+ W V I+AMTA
Sbjct: 783 LIFMDVHMPEMDGLQATQVIRN-----------------------TWSVESQPYIIAMTA 819
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
+Q + C++ GM+DY+SKP E+L
Sbjct: 820 AAMQGDRDLCLRAGMNDYISKPIVFEEL 847
>gi|427730175|ref|YP_007076412.1| PAS domain-containing protein [Nostoc sp. PCC 7524]
gi|427366094|gb|AFY48815.1| PAS domain S-box [Nostoc sp. PCC 7524]
Length = 1712
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 211/676 (31%), Positives = 319/676 (47%), Gaps = 128/676 (18%)
Query: 573 AINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHE 632
A+ A +G I L H+ + ++ + + K AEAA+ AKS+FLA +SHE
Sbjct: 969 AVAAQLG---IALAHAHLLEQETRQREELTVKNFALEQAKRAAEAANRAKSEFLAMMSHE 1025
Query: 633 IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEF 692
IRTPMN V+GM ++L++TEL Q D+ +T S + L+++IND+LD +KIESG+LE E
Sbjct: 1026 IRTPMNAVIGMTELLLNTELTTQQRDFVETVLTSSEALLTIINDILDFSKIESGKLELEA 1085
Query: 693 VPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKF 752
PF L ++ V+ L + KA K IELA + +VP ++GD R RQI+ NL+ N+IKF
Sbjct: 1086 QPFDLRTCVEQVIDLLAPKAAHKDIELAYLIHPQVPTQIVGDLTRLRQILMNLLNNAIKF 1145
Query: 753 TQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812
T +KG + +SV A+ V + K+ NS Q
Sbjct: 1146 T-EKGEVILSVR-AEPVTT---------HKAKNSCQ------------------------ 1170
Query: 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
+L T++DTG+GIP + R+F PF+QAD+S +R YGGTG+GL
Sbjct: 1171 -----------------ILFTIKDTGIGIPPDKMGRLFQPFVQADASMTRKYGGTGLGLV 1213
Query: 873 ISRCLVELMGGEIGFVSE---------------------PGTGSTFSFTVT---FTEGER 908
IS+ L E+M G + S+ P GSTF F +T +
Sbjct: 1214 ISKRLGEMMSGYLWVESQGCVGGNPPPQWQAKKPVLSNLPYPGSTFYFAMTAQVVDHADS 1273
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
N L + + R R L++DD ++ + +M + A S A + +
Sbjct: 1274 NELTLTYP------IQLRNKRLLIVDDNPTNRKILHLQTEPWQMQTYTAQSGAEALALID 1327
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
Q + ++D + + + GL L ++Q R G + LP + L TS +
Sbjct: 1328 QGM------QFDIAILDMQMPEMD-GLTLAQEIRQ--RSG----YQYLPLVIL--TSWGQ 1372
Query: 1029 TDRDE-LKSDGIVTLLTKPLRLSVL---IGCFQEDPESSKKLQQKRKKPSLGHLLKG--K 1082
D D L++ G L KP++ S L + C E+ KL HL +
Sbjct: 1373 PDNDNALRNLGFTAYLHKPIKQSQLYDVLACTLENQPIRAKLPYPYPPQINQHLAEQLPL 1432
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+IL+ +D +VN++VA LKK G V G + L FD MD+ MPEMDG
Sbjct: 1433 RILLAEDIVVNQKVALLMLKKMGYRADVVANGLEVLAVLQ-HQPFDVVLMDVNMPEMDGL 1491
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+ + +IR N+ I+AMTA+ +Q E C+ GMDDY
Sbjct: 1492 ETSRRIRQTWND---------------------RPYIIAMTANAMQGDREACLAAGMDDY 1530
Query: 1203 VSKPFEDEQLYTAVAR 1218
+SKP + E+L A+ +
Sbjct: 1531 ISKPLQLEELAKALGK 1546
>gi|390949113|ref|YP_006412872.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390425682|gb|AFL72747.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1524
Score = 270 bits (691), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 200/621 (32%), Positives = 295/621 (47%), Gaps = 100/621 (16%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
E ARAE A VAKS+FLA +SHEIRTPMNGV+GM +L++T+LD Q +A+ SG+
Sbjct: 848 EQAARAEMASVAKSEFLANMSHEIRTPMNGVIGMTGLLLETDLDDEQRHFAEVVRASGES 907
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+ LIND+LD +KIE+G+L+ E + F L L++ + + +A +KG+E VP
Sbjct: 908 LLRLINDILDFSKIEAGKLDLEMLDFDLSLSLEDFATALALRAQEKGLEFLCDADPEVPA 967
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
+ GDPGR RQI+TNL GN+IKFT +V ++ VLE
Sbjct: 968 FLRGDPGRLRQILTNLAGNAIKFTPS---------------GEVAIRVSVLE-------- 1004
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
++ + L F V DTG+GIP + +
Sbjct: 1005 --ERTEDVLLRFAV-------------------------------RDTGIGIPEDKLGLL 1031
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
F F Q D+ST+R YGGTG+GL+IS+ L LM GE+G +S+ G GS F FT + +
Sbjct: 1032 FDKFSQVDASTTRQYGGTGLGLAISKQLAALMDGEVGVISQAGKGSEFWFTARLAKQPES 1091
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
+ Q +P ++ G+R L++DD + E+ L M A A L+
Sbjct: 1092 A---HRQLSLP--ADLLGVRVLIVDDNATNREILMTRLTSWGMRPAEARDGPEALRRLAG 1146
Query: 970 TCSTSVLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
++A++ + D E +G R G + ++ +L +
Sbjct: 1147 ALDEPDPFRVAVIDMQMPEMDGETLG-----------RAIGADSRLADTRMVMLTSLGMR 1195
Query: 1029 TDRDELKSDGIVTLLTKPLR-------LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKG 1081
D + G +TKP+R LS+++ S+ + + + +L G
Sbjct: 1196 GDARRFQELGFAAYITKPIRHEELKAVLSLVLTARSPAEMVSRPIATRYLAREILNLFAG 1255
Query: 1082 --KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
+IL+ +DN N++VA G LKK G V G AV L +D MD+QMP M
Sbjct: 1256 CKVRILLAEDNTTNQQVALGILKKMGLHADAVANGAEAVTALA-SIPYDLVLMDVQMPVM 1314
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG +AT IR +S+ N GL PI+AMTA ++ EQC+ GM
Sbjct: 1315 DGLEATRAIR--------------ASSSAVRNPGL---PIIAMTAGAMRGDQEQCLDAGM 1357
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+DYVSKP L +AR+
Sbjct: 1358 NDYVSKPVSPAILAEVLARWL 1378
>gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
Length = 1768
Score = 270 bits (690), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 299/626 (47%), Gaps = 119/626 (19%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ + K A+AA AKS FLA +SHEIRTPMN ++GM Q+ + T LD Q +Y +
Sbjct: 1024 EELTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTSLDKKQQNYVEKIDR 1083
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
+ K L+ +IND+LD +KIE+G+L+ E VPF L +L+++ +FS KA K +EL V+
Sbjct: 1084 ASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFAVAP 1143
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P +LVG+ ++ +Q V ++L + N
Sbjct: 1144 NIPR--------------HLVGDPLRLSQ------VLINLMN-----------------N 1166
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
+++ + ML + + + I L +V D G+G+ E
Sbjct: 1167 AIKFTE-------------------QGEVMLSISQLVREDEEILLKFSVRDNGIGLTEEQ 1207
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
+ ++F F QADSST+R YGGTG+GL+I + LVELMGGEIG S+ G GSTF F+V F
Sbjct: 1208 RGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFFFSVRFKV 1267
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
+ Q + E G+R LV DD + ++ R L+ + V S A S
Sbjct: 1268 AD--------NQLIKVAQELEGMRILVADDNATARDILRSTLESMGFTVDTVRSGAEALS 1319
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL-------PK 1018
+T + LID W + GLE +R L PK
Sbjct: 1320 RCQET-------DYGVALID---W-------------RMPEMDGLETARRLLSERTNPPK 1356
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK----KPS 1074
+++ D+ + I +TKP+ S L+ + +RK P+
Sbjct: 1357 TLIVSAHADGDFIDKAEQAEISGYITKPISASRLLDGIMSALGKQGAMPVRRKGSEVSPA 1416
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
L LKGK+IL+V+DN +N+ VA L++ G I++ + G+ A++KL +FD MD
Sbjct: 1417 LLAQLKGKRILLVEDNEMNQEVASEFLEQVGVILSIAENGQVALEKLA-MQSFDLVLMDC 1475
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP MDG+QAT ++R L +P++AMTA+ + E C
Sbjct: 1476 QMPVMDGYQATAELRKRPE--------------------LADLPVIAMTANAMAGDKEMC 1515
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFF 1220
++ GM+D+++KP E LY + +
Sbjct: 1516 LRAGMNDHIAKPIEVSLLYKTLLEYL 1541
>gi|343502907|ref|ZP_08740745.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio tubiashii ATCC 19109]
gi|418479493|ref|ZP_13048574.1| two-component regulatory system multi-sensor hybrid histidine kinase
[Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342812985|gb|EGU47967.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio tubiashii ATCC 19109]
gi|384572892|gb|EIF03397.1| two-component regulatory system multi-sensor hybrid histidine kinase
[Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 1199
Score = 270 bits (690), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 200/637 (31%), Positives = 321/637 (50%), Gaps = 106/637 (16%)
Query: 592 HAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
H+A+ R A+ ++ + A++A+ AKS FLA +SHEIRTPMN ++GM + + T+
Sbjct: 457 HSALERFAE------KLAIARDDADSANSAKSDFLANMSHEIRTPMNAIIGMSYLALKTD 510
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
L AQ +Y S L+ LIND+LD +KIE+G+L+ E V FHL +VLDN+ +L +
Sbjct: 511 LTKAQRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIENVDFHLENVLDNISNLVGLR 570
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
A+++G+EL I++ VP ++GDP R QI+ NL N++KFT+ KG I +S+ +A+
Sbjct: 571 ASERGLELLIHIDRDVPTTLVGDPLRLGQILINLANNAVKFTE-KGEIKISIRVAER--- 626
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
+ D VLE F V D
Sbjct: 627 --NGDDLVLE-------------------FSVED-------------------------- 639
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
+G+G+ E ++F+ F QADSST+R YGGTG+GL+IS+ L +LMGG+I SE
Sbjct: 640 -----SGIGMTAEQTAKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIRVESEA 694
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G GS F+FTV + S K ++ V E LR LV+DD + + L+ L
Sbjct: 695 GKGSCFTFTV----ASKVSHALKQEEIAVPV-ELGKLRVLVVDDNASARIIVEDILESLR 749
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
H +S A + L+ S L++ D + K+ G+ L M+K Q
Sbjct: 750 FDAHSVSSADDALAELNQALSNE--QPYDLLITDWQMPGKD-GIDLLEMVKAQ------- 799
Query: 1012 ISRN-LPKIFLLATSISETDRDELKSDGIV--TLLTKPLRLS----VLIGCFQED-PESS 1063
IS++ PK +L E + ++ GI ++L KP+ S ++ + D S
Sbjct: 800 ISQSQQPKPLMLTAFGREELTEIIEQRGITVPSILDKPITASHLFDAIVSLYGVDHARLS 859
Query: 1064 KKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP 1123
+ +++ + + L G Q+L+V+DN +N+ +A L+ VT + G+ A+D L
Sbjct: 860 RSEAEEQNQLANVQQLAGAQLLLVEDNEINQELAIELLEGQQMHVTVAENGQVALD-LYK 918
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
+ FD MD QMP MDG++AT IR + +PI+AMT
Sbjct: 919 TNEFDGILMDCQMPIMDGYEATQYIR--------------------TKLSDHSIPIIAMT 958
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
A+V++ + + GM+D ++KP + +++ +A++
Sbjct: 959 ANVMERDKVKAAEAGMNDIIAKPIDVGSMFSTLAKWI 995
>gi|409203835|ref|ZP_11232038.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas flavipulchra
JG1]
Length = 1243
Score = 270 bits (690), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 199/625 (31%), Positives = 303/625 (48%), Gaps = 117/625 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++E K A+ + AKS+FLA +SHEIRTPMN ++GM + + TEL+A Q DY +
Sbjct: 487 ELIEAKNLAQNSAKAKSEFLANMSHEIRTPMNAIIGMSHLALATELNAKQHDYVSKIDTA 546
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K L+ LIND+LD +KIE+G++E E+ F +LDNV ++ S KA +K +EL + +
Sbjct: 547 AKQLLRLINDILDFSKIEAGKIELEYQAFSTEKLLDNVATIVSVKAQEKQLELVFDIDSQ 606
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP VIGD R Q++ NL GN++KFT + G + + V L
Sbjct: 607 VPYCVIGDQFRISQVLINLAGNAVKFT-ETGEVVIRVAL--------------------- 644
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
N + L +IK +V+D+G+G+ Q
Sbjct: 645 --------------------------------VNVEKGLAKIKF--SVKDSGIGMNKRQQ 670
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+F F QAD+S +R YGGTG+GL+IS+ LV+LMGGEI SE GS F FT+
Sbjct: 671 KNLFQSFSQADNSITRKYGGTGLGLTISQQLVKLMGGEIYVESEENVGSEFYFTLEMEVS 730
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+ S ++ ++S A +IDD +V L M V CSY
Sbjct: 731 DELSQAKMASTHLSELS------ATIIDDNQHALDVLSGMLTNFGMQV---------CSY 775
Query: 967 ------LSDTCSTSVLPQLALVLIDKDVWD--KEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
L+ T LP L+ +D W K G+ L L+ Q +++S++ K
Sbjct: 776 LDPHKALNQFVLTQELPD--LIFVD---WHMPKLDGIELITKLQSQ-----VDVSQS--K 823
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ----EDPESSKKLQQKRKKPS 1074
L+ E + ++ ++ + +L KP+ S L+ Q + PE + +K + S
Sbjct: 824 FILVTAYGRELNLNDSQASLVDGVLLKPINPSNLVDVIQNAVFDSPEVRTTITKKEQTIS 883
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
L G ILV +D VN+ +A L GA V D G+ A+D++ H D MD+
Sbjct: 884 -KQALNGISILVAEDQPVNQEIAAEILSSFGAQVAVADNGQEAIDQVHSKH-IDIVLMDM 941
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP MDG AT +R +E + N +PILAMTA+ ++ + C
Sbjct: 942 QMPVMDGITATQNLR-IEFDKNT-------------------LPILAMTANAMEEDIQTC 981
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+D+V+KP + EQL ++ ++
Sbjct: 982 IDAGMNDHVTKPIDVEQLVKSILKY 1006
>gi|425091203|ref|ZP_18494288.1| PAS domain S-box protein [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|405613360|gb|EKB86108.1| PAS domain S-box protein [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
Length = 897
Score = 270 bits (690), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 197/608 (32%), Positives = 294/608 (48%), Gaps = 104/608 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A A+ AKS FLA +SHEIRTPMNG+LGM Q+ +DT L A Q +Y +S + L+ +I
Sbjct: 261 AREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTPLTAEQREYLSLVMSSAQSLLHII 320
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD ++IESG+++ + P + + +++ A++KGIEL + +S VPEV+I D
Sbjct: 321 NDILDFSRIESGKMQVDVEPLEIRPFVQSLIRPHMPAASEKGIELLVDISPAVPEVLIVD 380
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQI+TNL+GN++KFT +G + +++ A++
Sbjct: 381 GPRLRQILTNLLGNALKFTH-QGEVLLAIAPAEND------------------------- 414
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
+RW+ F+ + DTG+GI E Q IF F
Sbjct: 415 ----------NRWR----FR-------------------IRDTGIGIAPEKQKAIFEAFS 441
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSST+R YGGTG+GL+IS LV LMGGE+ S+PG GS F+FT+ EG L+
Sbjct: 442 QADSSTTRRYGGTGLGLTISARLVSLMGGELTVESQPGAGSEFAFTLPL-EG----LNAA 496
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
P +S F R LV+DD S + L+++ + N+ A ++
Sbjct: 497 ASGSAP-LSRFNHQRVLVVDDNSTNLRLLDAMLRQMGLMPTCVNNAGEALRRAAEG---- 551
Query: 975 VLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
P L+L+D + D + + L L + R+ +I +L++ D +
Sbjct: 552 --PPWPLILLDAQMPDMDGVSLALELSALPEARQS---------QIVMLSSMSRHFDANM 600
Query: 1034 LKSDGIVTLLTKPL---RLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDN 1090
LK GI L KP+ L +I +P G IL+ +DN
Sbjct: 601 LKRIGIAHYLHKPVAQRELHQVIAGILVPTPVVTTTPAPVAQPVRDQ--TGLNILLAEDN 658
Query: 1091 MVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRH 1150
+VN++VA L++ G V+ GR A+++ +D +DLQMPEMDG A IR
Sbjct: 659 LVNQKVARRLLEQLGHRCEVVNNGREALERWRAA-CWDLLLIDLQMPEMDGETA---IRL 714
Query: 1151 LENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDE 1210
L E +G H P +AMTA +Q E+C+ G D Y++KP E
Sbjct: 715 LREETQA--------------LGRQHQPAIAMTAHAMQGDRERCLAMGFDGYIAKPVSQE 760
Query: 1211 QLYTAVAR 1218
L A+AR
Sbjct: 761 ALREAIAR 768
>gi|303246174|ref|ZP_07332455.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
gi|302492570|gb|EFL52441.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
Length = 1620
Score = 270 bits (690), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 195/618 (31%), Positives = 298/618 (48%), Gaps = 109/618 (17%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+AE A AKS FLA +SHEIRTPMN ++G+ + + TEL Q Y + + S ++L+ +
Sbjct: 732 QAEEATKAKSDFLANMSHEIRTPMNAIMGLSHLALQTELTDKQRKYIEKVYRSAENLLGI 791
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
+ND+LD +KIE+G+L+ E V FHL DV +N+ S+ KA + G+EL + +P ++G
Sbjct: 792 LNDILDFSKIEAGKLDMEHVAFHLEDVFENMASMVGLKAEEAGLELLFDLPGNMP-TLVG 850
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
DP R QI+ NL N++KFT +G + VS
Sbjct: 851 DPLRLGQILINLGNNAVKFTP-RGEVVVSA------------------------------ 879
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
++++ T T KL +V+DTG+G+ E + ++F F
Sbjct: 880 --------------------RVIEETGTG-----AKLHFSVKDTGIGLSEEQRKKLFQHF 914
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
QAD+ST+R YGG G+GL+I + L ELMGG+I SEPG GS F FT F +
Sbjct: 915 SQADASTTRKYGGAGLGLAICKKLTELMGGDIWLESEPGMGSVFHFTARFGK-------- 966
Query: 914 KWQQYVPDVS-EFRG-LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+ PD S ++ G L LV+DD S ++ L R A S + A + L +
Sbjct: 967 QAAPAAPDRSRDWAGELHVLVVDDNSAARDIFLGMLTRFGFQAEAAASGKEALALLEEKG 1026
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
+ + D+ +E+ L K + PKI L AT T +
Sbjct: 1027 QERPYDMAIIDWVLPDMSGRELCQALRDAPKIDPK----------PKIILAATHGRPTLK 1076
Query: 1032 ---DELKSDGIVTLLTKPLRLSVLIGCFQED----PE-SSKKLQQKRKK-PSLGHLLKGK 1082
+EL ++ T+L KP S L + PE S + KRK+ + L+G
Sbjct: 1077 ALTEELDTEN--TVLHKPFMPSSLFNAIMDAMGRLPERGSGHAKAKRKEIAATVSKLRGA 1134
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
++L+V+DN +N+ VA L ++G D GR A++ L FD MD QMP MDG+
Sbjct: 1135 KVLLVEDNAINQEVARELLARNGVRTKVADNGRTAMEMLQ-KERFDGVLMDCQMPVMDGY 1193
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+AT +IR + G +PI+AMTA+V+ E+C+ CGM+ +
Sbjct: 1194 EATRKIRAMG--------------------GFEDLPIIAMTANVMAGDKEKCLACGMNAH 1233
Query: 1203 VSKPFEDEQLYTAVARFF 1220
+ KP ++L + R+
Sbjct: 1234 IGKPINFKELSQTLGRWI 1251
>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
Length = 1523
Score = 270 bits (690), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 194/602 (32%), Positives = 290/602 (48%), Gaps = 102/602 (16%)
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S FLAT+SHEIRTPMN VLGM +L++T L+A Q D+ +T SG L++LIND+LD +K
Sbjct: 850 SSFLATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRVSGDALLTLINDILDFSK 909
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
+E G +E E + F L L+ V LF+ A+ KG+ELA+ V VP + GD R RQI+
Sbjct: 910 LEVGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLVPPEVPRYLRGDASRLRQIL 969
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
NLV N+IKFT + +V ++ ++++++ VQ
Sbjct: 970 NNLVSNAIKFTH---------------QGEVVIQAELMQETATHVQ-------------- 1000
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
L ++V DTG+GIP +AQ ++F PF Q D+ST+R
Sbjct: 1001 ---------------------------LRLSVRDTGIGIPKDAQTKLFQPFTQVDASTTR 1033
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922
YGGTG+GL+I + L ELMGG I SE G GSTFS +T ER + Q +
Sbjct: 1034 KYGGTGLGLAICKQLTELMGGRIFLESEEGRGSTFSLELTL---ERQPYARQISQQPARI 1090
Query: 923 S-EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
+ +G R LV+DD + ++ RY M V A + A L + LA+
Sbjct: 1091 PVDLQGKRLLVVDDNATNRKIVRYQATAWGMVVEEAENAYQALDKLRQAAREGIPFPLAV 1150
Query: 982 VLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSD-GI 1039
+ + D E +G + K E+S+ ++ TS+ + ++ G
Sbjct: 1151 LDMQMPEVDGETLGRWI---------KADPELSQTQ---LVMMTSLGLGEHSRRAAEIGF 1198
Query: 1040 VTLLTKPLRLSVLIGCFQEDPESSKKLQQ---------KRKKPSLGHLLKGKQILVVDDN 1090
LTKP++ + L S L + PS + +IL+ +DN
Sbjct: 1199 AAYLTKPVKQTRLQEALVMALGKSSGLATSLLGMGPPLSQSAPSASRPQQPLRILLAEDN 1258
Query: 1091 MVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRH 1150
VN++VA L+ G + V G+ +D L +D MD QMP MDG++AT ++R
Sbjct: 1259 PVNQKVALRQLQSLGYMADVVANGQEVLDLLQRVQ-YDLILMDCQMPVMDGYEATRRLRQ 1317
Query: 1151 LENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDE 1210
E SG + ++A+TA+ +Q E+C++ GMDDY+SKP E
Sbjct: 1318 QER------GSGHRTV------------VIAITANAMQEDRERCLQAGMDDYLSKPVLKE 1359
Query: 1211 QL 1212
L
Sbjct: 1360 DL 1361
>gi|119715905|ref|YP_922870.1| ATPase domain-containing protein [Nocardioides sp. JS614]
gi|119536566|gb|ABL81183.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
Length = 750
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 196/597 (32%), Positives = 288/597 (48%), Gaps = 97/597 (16%)
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FLAT+SHEIRTPMNGV+G+ ++L+DTELD Q YA+ +G L++LI+D+LD +KIE
Sbjct: 91 FLATMSHEIRTPMNGVIGLTRLLLDTELDETQRRYAKGLSEAGTTLLTLIDDILDFSKIE 150
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G L+ E PF LD V L ++ A +K +EL + +P ++GD R RQ++ N
Sbjct: 151 AGMLDLERAPFDPRRTLDAVAGLVANSAARKDVELVVEAVPDLPAGLVGDEARLRQVLLN 210
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVV 804
L N++KFT G + + L D+ SG P
Sbjct: 211 LASNAVKFTS-TGEVVIRATL--------------------------DR-----SGQPAA 238
Query: 805 DRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTY 864
++ F+++D TG+GIP AQ R+F F QA++ST+R Y
Sbjct: 239 SPGETPVRFEVVD-------------------TGIGIPQAAQARLFRSFTQAEASTTRRY 279
Query: 865 GGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN-SLDPKWQQYVPDVS 923
GGTG+GL+ISR LV LMGG IGF S+ G GSTF F V T + + S D + +P +
Sbjct: 280 GGTGLGLAISRRLVRLMGGTIGFESQEGHGSTFWFAVPLTAADLDTSRDADPARGIPADA 339
Query: 924 EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVL 983
RAL++DD + + V L + V + + + + + A+VL
Sbjct: 340 -----RALLVDDNATQRRVLGAQLTEAGLRTDVTGRPEAVLTLMR--AAAAAADPYAVVL 392
Query: 984 IDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLL 1043
+D + + VL + G R+ + L AT +E D D + G+ T++
Sbjct: 393 VDSRLPGVDGLEVLAAI-------GADPALRDSRPVLLSAT--AELDHDAVLRAGVSTVV 443
Query: 1044 TKPLRLSVLIGCFQE--------DPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRR 1095
TKP+RLS L E PE + PS G ++LV +DN +N+
Sbjct: 444 TKPVRLSELRSRLTELLAPPAPTAPEPDAPAPPRGSAPSRGSAPSRGRVLVAEDNSINQL 503
Query: 1096 VAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEI 1155
VAEG L + G V G+ AV + ++ A MD QMP MDG+QAT +IR E
Sbjct: 504 VAEGLLTRLGFEVDLAGDGKEAVAAVA-RQSYTAVLMDGQMPIMDGYQATAEIRSRE--- 559
Query: 1156 NEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
VG +PI+AMTA + + + GMD +V+KP + L
Sbjct: 560 ----------------VG-TRLPIIAMTASATEDDKRRALAAGMDGFVAKPVDAATL 599
>gi|144898961|emb|CAM75825.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
Length = 1444
Score = 270 bits (689), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 202/633 (31%), Positives = 298/633 (47%), Gaps = 106/633 (16%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
I V+ E+ K AE A KS FLA +SHEIRTPMN ++GM + + T L Q
Sbjct: 689 ITAVKQAEAELTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLTLKTPLTPRQH 748
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY + +G+ L+ +IND+LD +KIE+G+L E + F L VLDN+ SL + K N K +
Sbjct: 749 DYVKKIQGAGQHLLGIINDILDFSKIEAGKLTVEHIGFDLDKVLDNIASLLTEKTNAKNL 808
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL V VP ++GD R QI+ N N++KFT+ + ++D+
Sbjct: 809 ELVFDVPSDVPRALVGDSLRLGQILINYANNAVKFTE---------------KGEIDIIV 853
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+V E++ V L V DT
Sbjct: 854 RVQERTQTEV-----------------------------------------VLYFAVRDT 872
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI E + R+F F QAD+ST+R +GGTG+GL+IS+ L ELM G +G SE G GSTF
Sbjct: 873 GIGITPEQKARLFQSFEQADTSTTRKFGGTGLGLAISKKLAELMDGAVGVESEYGKGSTF 932
Query: 898 SFTVTFTEG-ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
FT G ER+ ++ +P + RG R LV+DD V L +
Sbjct: 933 WFTARMGVGVERD------RKLLPS-PDLRGCRVLVVDDNDNARAVLCDLLTSMTFEPSE 985
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRN 1015
S A + + + ALVL+D + D + I H R G+E
Sbjct: 986 VASGPAAVAEVKRAADAGI--PYALVLVDWRMPDMDGIDTARHI------RALGVE---Q 1034
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ------EDPESSKKLQQK 1069
P++ ++ E +++ GI +L KPL S+L + ES Q
Sbjct: 1035 APRLLMVTAYGREEVLNQINEAGIDDVLIKPLSASILFDTVMRMFGGGRNGESGADDQGG 1094
Query: 1070 RKKPSLGHL--LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
P L L ++G +IL+V+DN +N+ VA L G +V D G A+DK+ + +
Sbjct: 1095 SPAP-LDDLAAIQGARILLVEDNDLNQEVAAELLADAGFVVDIADDGAIALDKVQ-RNTY 1152
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD+QMP MDG AT +IR L F + +PI+AMTA+ +
Sbjct: 1153 DIVLMDMQMPVMDGVTATREIRKLGR---------------FDD-----LPIVAMTANAM 1192
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ + C GM+D+V+KP + +QL+ A+ R+
Sbjct: 1193 RRDQDLCRDAGMNDFVAKPIDPDQLWAALVRWI 1225
>gi|402573935|ref|YP_006623278.1| signal transduction histidine kinase [Desulfosporosinus meridiei DSM
13257]
gi|402255132|gb|AFQ45407.1| signal transduction histidine kinase [Desulfosporosinus meridiei DSM
13257]
Length = 1259
Score = 269 bits (688), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 218/707 (30%), Positives = 342/707 (48%), Gaps = 128/707 (18%)
Query: 532 MYGPDVTDTGLLRVSNLDFGDPSRKHEMH--CRFKQKPPVPWTAINASIGVVVITLLVGH 589
+Y D+++ R NL P + + R K+ P + W + IG V+ +G+
Sbjct: 455 VYDKDLSNFTPFREENL----PMIGEDFYTEVRLKEDPNI-WFSF---IGQVIERDGLGN 506
Query: 590 I--FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
+ F + I + + E+ AE A AKSQFLA +SHEIRTPMN ++G+ +L
Sbjct: 507 VQRFIGVLQNITERKRIEVELKAAMEEAEEASQAKSQFLANMSHEIRTPMNAIMGLTHLL 566
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
++L Q Y + K L+ +IND+LD +KIE+G+LE E + F+L VL+N+ +L
Sbjct: 567 RQSDLKDTQKSYVLKTEEASKALLRIINDILDFSKIEAGKLEIEMIQFNLDKVLENISNL 626
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
++ A KGI++ + VP+ +IGDP R QI++NL+ N+IKFT D+G + VSV
Sbjct: 627 YTISATNKGIDINFDRGEAVPDELIGDPLRLEQILSNLITNAIKFT-DQGEVNVSV---- 681
Query: 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR 827
+V E++ DKV
Sbjct: 682 ----------RVFEET-------EDKV--------------------------------- 691
Query: 828 IKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF 887
KL V DTG+GI E ++FT F QAD ST+R YGGTG+GL+IS+ LVELM G+I
Sbjct: 692 -KLHFRVTDTGIGIKEEHIGKLFTAFTQADGSTTRKYGGTGLGLTISKQLVELMKGDIWV 750
Query: 888 VSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHL 947
S G G++F + F E + + P + Y PD+ RG + LV+D + L
Sbjct: 751 ESVYGEGTSFEVLLQF-EKDSALIKPNFADY-PDL---RGKKVLVVDHNKTSLVILERML 805
Query: 948 QRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ---- 1003
+ V N+ P A+ L+ + +D LVL Y L
Sbjct: 806 CSFSLEVTALNN-----------------PFEAIELMHQKDFDL---LVLDYNLPDLSGI 845
Query: 1004 ---QRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDP 1060
+R EI+ LPK ++ + E+ + GI L KP+ S++
Sbjct: 846 EMYKRLVANTEIT--LPKTIFVSAAGRESYYAQANQLGIKYFLVKPINQSLMFDAVMNAL 903
Query: 1061 ESSKKLQQKR---KKPSLGHL--LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
+ Q R ++ L H L GK++L+V+DN +N+ VA+ L++ G V+ D G+
Sbjct: 904 KGRAWSQANRIRNEEVQLKHRQKLAGKRLLLVEDNEINQLVAKDILEQAGIHVSIADNGQ 963
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
A+ K + +DA MD+QMP MDG++AT +R E +S E
Sbjct: 964 EAI-KYVHGNRYDALLMDVQMPIMDGYRATEILR-------ESYSSEE------------ 1003
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+PI+AMTA+ ++ E+ ++ GM+DY+SKP + L+ + ++ +S
Sbjct: 1004 -LPIIAMTANALRGDREKSIEAGMNDYISKPIDPILLFETLEKWLVS 1049
>gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus
degradans 2-40]
gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
2-40]
Length = 765
Score = 269 bits (688), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 193/613 (31%), Positives = 297/613 (48%), Gaps = 99/613 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E L AEAA+ AKSQF+AT+SHEIRTPMNGV+GM++ML DT LD +Q Y S
Sbjct: 238 ETRRLVQEAEAANRAKSQFIATMSHEIRTPMNGVIGMVEMLRDTTLDDSQRHYLGIIERS 297
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G L+++IND+LD +KIE+G++ E + F L ++L++ + +FS+ +++ IEL +S
Sbjct: 298 GDSLMNIINDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNIELICSISPN 357
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
P+ ++GDP R +Q++ NL+GN+ KFT + GHI+V +V+ D
Sbjct: 358 TPKQLMGDPTRLKQVLVNLIGNAFKFTSE-GHIYVEAR-------QVNASD--------- 400
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ P++ +VED+G+GI Q
Sbjct: 401 ------------ADLPMIH--------------------------FSVEDSGIGIESNQQ 422
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
++F F QAD ST+R +GGTG+GL+I + L E+MGGEIG S GSTF F+ FT
Sbjct: 423 EKLFDAFCQADGSTTRKFGGTGLGLTICKQLAEMMGGEIGVYSREKAGSTFWFSAVFTHV 482
Query: 907 ER--NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
E+ N P+ G + LV++ I +V H +A + +S + A
Sbjct: 483 EKAINEQPPQ---------SLAGKKLLVVNQSKIVEKVIASHAADWNIACRIVHSGEKAL 533
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
+S +++ +D+ D GL + ++ L + P IFL+ T
Sbjct: 534 EVISGQH------HYDFIILSQDLQDMP-GLDVADKVRT------LAAYSSTP-IFLV-T 578
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQI 1084
+ ++ E + I LL PL + + Q P + +QK + +
Sbjct: 579 KVRKSQLPEDRLHTITALLPYPLSIHKIENLLQTKPTHTVVEEQKTNTQATTVSEGPLHV 638
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT-PPHNFDACFMDLQMPEMDGFQ 1143
LV +DN VNR V EG L K + G A++ +T P +D MD +MPEMDGF+
Sbjct: 639 LVAEDNPVNRMVIEGLLAKFDIAPKFAEDGLQALNAVTESPTPYDLIIMDCEMPEMDGFE 698
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT IR E+ N+ + I+A+TA V ++ GM+ Y+
Sbjct: 699 ATRSIRTWESNNNQPATT-----------------IIALTAHVEAEHRQRVFDSGMNYYL 741
Query: 1204 SKPFEDEQLYTAV 1216
SKP E+L A+
Sbjct: 742 SKPVTMEKLSEAL 754
>gi|403528403|ref|YP_006663290.1| hybrid signal transduction histidine kinase J [Arthrobacter sp.
Rue61a]
gi|403230830|gb|AFR30252.1| hybrid signal transduction histidine kinase J [Arthrobacter sp.
Rue61a]
Length = 1153
Score = 269 bits (688), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 204/610 (33%), Positives = 284/610 (46%), Gaps = 105/610 (17%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+FLAT+SHEIRTP+N V+G+ ++MDT L Q YAQ +G+ L++LIND+LD +
Sbjct: 478 KSEFLATMSHEIRTPLNAVIGLTSLMMDTPLSEGQRQYAQGVKGAGEVLLTLINDILDFS 537
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
K+E+G+++ + F ++++ V L A K +EL Y VP ++GD GR RQI
Sbjct: 538 KLEAGKVDLDINAFDPRELVEEVAGLVVEAAQGKDLELISYCHPDVPARLMGDAGRIRQI 597
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL N++KFT D +V+V+ VL N + H +K
Sbjct: 598 LLNLSSNAVKFTPD---------------GEVEVQVSVLAHDPN-LAHDPNKA------- 634
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
L V DTG+GI E R+F F QAD+ST+
Sbjct: 635 ---------------------------SLRFEVRDTGIGISAENHQRLFESFAQADASTT 667
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R YGGTG+GL+ISR L E+MGG+IG SEPG GS F F + L P +
Sbjct: 668 RRYGGTGLGLAISRRLTEVMGGKIGLDSEPGVGSRFWFDLEL------PLGPAATETESL 721
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA-VHVANSMQLACSYLSDTCSTSVLPQLA 980
+ G R LV+DD + V L M V VA++ Y + S+
Sbjct: 722 PATLAGRRVLVVDDNATNRLVLDTQLASWGMVPVSVADAASALDEYRAAASSSH---PYD 778
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV 1040
+ ++D + D + GL L +K + G P I LL TS + +R +L S GI
Sbjct: 779 IAVVDMCMPDTD-GLQLARNIKNESNGSG------GPGIILL-TSTMQVERSDLTSAGIR 830
Query: 1041 TLLTKPLRLSVLIGCF-----------QEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089
LTKP+R S L P + ++ P LG L LV +D
Sbjct: 831 EYLTKPVRSSELYNRLLRVLATKTTGAPSAPAINHPVETADPVPRLGKL------LVAED 884
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
N VN+ VA G + G V VD G AV + A MD MP MDGF AT IR
Sbjct: 885 NEVNQLVARGMANRLGYEVHIVDDGEQAVSAAL-SGTYAAVLMDCHMPVMDGFDATKAIR 943
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
+G S+ +PI+AMTA + E+C GMDDY+SKP +
Sbjct: 944 A---------RNGHSA----------RIPIIAMTAGALDEDRERCFAAGMDDYISKPVDL 984
Query: 1210 EQLYTAVARF 1219
+L +AR+
Sbjct: 985 AKLAEVLARW 994
>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
Length = 916
Score = 269 bits (688), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 193/618 (31%), Positives = 308/618 (49%), Gaps = 100/618 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K AEAA AKS+FLAT+SHEIRTPMNG+LGM ++L+ T+L+ Q +A+T +S
Sbjct: 254 ELVLAKESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLQTQLNRDQQRFAETVQSS 313
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI-YVSD 725
G+ L+ +IND+LD +KIES +E E + F L ++++ L++F+ A++KG+ELA ++
Sbjct: 314 GRHLLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKGLELAAQFIPP 373
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+V GD R RQI NL+ N+IKFT +G + + L + S+V+++ V + +
Sbjct: 374 NRAFMVRGDSFRLRQIFANLISNAIKFT-SQGEVVIRTQLCEAAGSRVNLRICVEDTGI- 431
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
G P K ++ F
Sbjct: 432 --------------GIPPEYHKKIFQQFS------------------------------- 446
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
QAD ST+R YGGTG+GL+I + L+ELMGG I S PG G+ F + E
Sbjct: 447 ---------QADGSTTRQYGGTGLGLTICKKLLELMGGSIHIDSTPGQGTKFQINL---E 494
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
E+++L+ Q P++++ G+R LV+DD E+ R LQ ++ +S A
Sbjct: 495 LEKSALEHAHQ---PNITDLAGIRILVVDDNQTNREILRLQLQNWKIQAVCTHSADHALF 551
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
++ C+ + LV++D + K GL Q +K + + N +I +L ++
Sbjct: 552 AMTKACNIN--EPYHLVILDMHM-PKMDGL-------QLAKKIHADPTLNKTRIMMLTST 601
Query: 1026 ISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKP-SLGHLLKGK 1082
+ + + GI+ + KP+R LI + + + P L + L G
Sbjct: 602 HHDVTQLAKDNAGILRYVNKPVRQKELIDIIMDVMGRNLDNPVAPIQNPPFILDYNLHGS 661
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+L+ +DN VN+ VA+ L + G G+ AVD L H++D MD QMP MDGF
Sbjct: 662 -VLLAEDNPVNQEVAKAMLSRLGLNTVIAHDGKQAVD-LIRNHHYDIILMDCQMPVMDGF 719
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+AT QIR N+I PI+A+TA+ + QC+ GMDD+
Sbjct: 720 EATAQIRQHLNKI----------------------PIIALTANATEDDRTQCLNAGMDDF 757
Query: 1203 VSKPFEDEQLYTAVARFF 1220
+SKP+ +QL + ++
Sbjct: 758 LSKPYTLDQLQQKILQWL 775
>gi|373957347|ref|ZP_09617307.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
gi|373893947|gb|EHQ29844.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
Length = 1437
Score = 269 bits (688), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 198/618 (32%), Positives = 307/618 (49%), Gaps = 113/618 (18%)
Query: 606 HEMMELKAR--AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTA 663
++ E AR AE A+ AKS FLAT+SHEIRTPMNGV+GM +L++T+L+ Q +YA+T
Sbjct: 906 QKIQEQAARLEAEKANQAKSVFLATMSHEIRTPMNGVIGMASLLVETDLNTEQREYAETI 965
Query: 664 HNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYV 723
G L+++IND+LD +KIESG+++ E + F L ++ V+ LF + +GI+L +
Sbjct: 966 ITCGDSLVNVINDILDFSKIESGKMDIEHIDFDLRHSIEEVMDLFGPRVALRGIDLIYEI 1025
Query: 724 SDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKS 783
VP +IGD R +Q++ NL+ N+IKFT+ + +V VK +L++
Sbjct: 1026 DYNVPRQIIGDSLRLKQVLINLINNAIKFTE---------------KGEVFVKISLLKQ- 1069
Query: 784 LNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPL 843
+ G I L TV DTG+GIP
Sbjct: 1070 ---------------------------------------DDHGGIDLAFTVTDTGIGIPE 1090
Query: 844 EAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903
E +F PF Q DSST+R YGGTG+GL IS LV+LMG EI S G GS FSF++
Sbjct: 1091 EKLSNLFKPFSQVDSSTTRKYGGTGLGLVISERLVKLMGDEIWAESNFGKGSVFSFSI-- 1148
Query: 904 TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
+ E ++ K Q ++ G + LV+DD + + LQ+ ++ A+S + A
Sbjct: 1149 -KAEISTAQLKRIQVSVNMDGLEGKKILVVDDNQTNLTILKTQLQQWKLIPVTASSAKEA 1207
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
+ L+ S LV+ D ++ D + G+ L +K + NLP I L
Sbjct: 1208 LAILAADNS------FNLVITDMEMPDMD-GVGLAKAIKH--------VHSNLPVIML-- 1250
Query: 1024 TSISETDRDELKSDGI-VTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK 1082
+SI D K+ G+ ++L KP + S L + E + ++K + + L+G
Sbjct: 1251 SSIG--DESSKKNPGLFASILVKPAKQSQLSKSIR--AELGNQREEKSTEEKSANTLEGG 1306
Query: 1083 -------QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
ILV +DN++N+++ + L K G + V G ++++ +D MD+Q
Sbjct: 1307 FSLLHPLSILVAEDNLINQKLIQRILNKMGYTIEIVANGYEVLEQMMLK-TYDVILMDVQ 1365
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP-ILAMTADVIQASNEQC 1194
MPEMDG + T IR G + P I+AMTA+ + E C
Sbjct: 1366 MPEMDGLETTQLIRK----------------------GKFKQPFIIAMTANAMLEDKEIC 1403
Query: 1195 MKCGMDDYVSKPFEDEQL 1212
+ GMDDY++KP + ++L
Sbjct: 1404 ISAGMDDYIAKPMKLDEL 1421
>gi|392408843|ref|YP_006445450.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390621979|gb|AFM23186.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1390
Score = 269 bits (688), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 204/630 (32%), Positives = 301/630 (47%), Gaps = 112/630 (17%)
Query: 604 DYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTA 663
D +++E K AE+A AKS FLAT+SHEIRTPM+G++GM ++LM T+L Q +Y +
Sbjct: 731 DVSDLVEAKLAAESASKAKSDFLATMSHEIRTPMHGIIGMTELLMQTQLSREQTEYLEII 790
Query: 664 HNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYV 723
SG L+ LIND+LD +KIE+G+ E E + F L +L + + +A+QKG+ELA V
Sbjct: 791 KASGDSLLRLINDILDFSKIEAGKFELEHIGFGLRAMLGETMESLAIQAHQKGLELAFRV 850
Query: 724 SDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKS 783
S VP+V+ GDP R RQII NLVGN+IKFT G +F+ V V S + L S
Sbjct: 851 SPEVPDVLKGDPVRLRQIIVNLVGNAIKFTS-AGEVFMDVI----VESASTPNETTLHFS 905
Query: 784 LNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPL 843
V +T G P + + + +F T DTG+
Sbjct: 906 ----------VSDTGIGIPEDKQQEIFSSF-------------------TQVDTGM---- 932
Query: 844 EAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903
SR YGGTG+GL+I L +M G++ S+ G GSTF F
Sbjct: 933 -----------------SRRYGGTGLGLAIGSRLAAMMDGKLWVESKIGNGSTFHLMAKF 975
Query: 904 TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
E + NS D + Q+ + GL LV+DD + + + L M N A
Sbjct: 976 -EIQENSTD-RLQESDTRFN-LMGLPVLVVDDNATNLRILKEILTGFGMNPTCVNEASAA 1032
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL------- 1016
+ + + T L ++D ++ + + G E+SR +
Sbjct: 1033 LTAVKEAQKTE--SPFLLTILDANMPEMD----------------GFELSRTIVETTGSR 1074
Query: 1017 -PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ------EDPESSKKLQQK 1069
P I +L +S + D + K GI L KP++ + L Q P+ S + +
Sbjct: 1075 GPVIMMLTSSRNRGDSERCKQCGISIYLKKPIKQAELFNAIQMTLGIAHKPDESNQPVAE 1134
Query: 1070 RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
LLK IL+V+DN VN+ +A L+K G V+ G+ A+ L +FD
Sbjct: 1135 CIAGERRRLLK---ILLVEDNPVNQTLALRLLEKRGCTVSIASNGKEALKSL-EAESFDL 1190
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD++MPEM+GF+ T IR+ E +SGE H+PI+AMTA +
Sbjct: 1191 ILMDIEMPEMNGFETTQAIRNAEQ------SSGE------------HIPIIAMTAHAMTG 1232
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+C+ GMD YVSKP + +L+ + +F
Sbjct: 1233 DRERCLDAGMDGYVSKPVDSRELFFTIDKF 1262
>gi|428213858|ref|YP_007087002.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002239|gb|AFY83082.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1437
Score = 269 bits (688), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 212/665 (31%), Positives = 316/665 (47%), Gaps = 130/665 (19%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A AA AKS+FLAT+SHEIRTPMN V+GM +L+DT+L+ Q D+ +T SG L+++I
Sbjct: 675 ALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTDLNPEQRDFVETVRASGDALLTII 734
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIESG+L+ E PF+L +++ L L +S+A +KG+ELA + PE++IGD
Sbjct: 735 NDILDFSKIESGKLDLEQQPFNLRSCIEDSLDLLASRAAEKGVELAYLIEPSTPEMIIGD 794
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVH---LADDVRSKVDVKDKVL--EKSLNSVQH 789
R RQI+ NL+ N++KFT+ KG + VSV + + +L +++ N H
Sbjct: 795 VTRVRQILVNLLSNAVKFTE-KGEVVVSVSASAIPPQQAGGIGTDSLILKDQETTNGHLH 853
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
K D ++ +G P+ ++ TV DTG+GIP E R+
Sbjct: 854 K-DLNPDSSAGNPLC------------------------QIQFTVSDTGIGIPPERMNRL 888
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS-------------------- 889
F F Q DSST+R YGGTG+GL+IS+ L ELMGG + VS
Sbjct: 889 FKSFSQVDSSTTREYGGTGLGLAISKRLSELMGGRMWVVSGEGVGGDPDPAFQWPIASSV 948
Query: 890 --------------------------EPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVS 923
P TGSTF FTV T N L P ++
Sbjct: 949 QEQSSPMPDPEQSIFTLTDAKSDQADTPPTGSTFYFTVMATPA-VNPLPVDLNGTQPSLA 1007
Query: 924 EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVL 983
G R L++DD + ++ M A+S + A +L ++ +
Sbjct: 1008 ---GKRVLIVDDNATNRQILTRQALFWGMKPKAASSAREALDWLQNSE-----------M 1053
Query: 984 IDKDVWDKEI----GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGI 1039
D + D ++ G+ L ++ G+ +R P + L TSI + D
Sbjct: 1054 FDIAILDMQMPQMDGITLASYIR------GIVKNREFPLVML--TSIGRQEVDLPDKVPF 1105
Query: 1040 VTLLTKPLRLS----VLIGCFQEDPESSKK--LQQKRKKPSLGHLLKGKQILVVDDNMVN 1093
L KP++ S VL G F P S+ L P + K +IL+ +D++VN
Sbjct: 1106 AAFLNKPIKQSYLYNVLAGIFGGVPILSRPVHLNAVAIDPQMAQ-QKPLRILLAEDHLVN 1164
Query: 1094 RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLEN 1153
++VA L + G G + L H +D MD+ MPEMDG AT QI ++
Sbjct: 1165 QKVALQILHRLGYRADVAGNGIEVLQALDRQH-YDVVLMDVHMPEMDGLAATRQI--CQD 1221
Query: 1154 EINEQIASGESSAEMFGNVGLWHVP-ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
++ +++ H P I+AMTA+ +Q E C+ GMDDY+SKP +L
Sbjct: 1222 ALDGRLS---------------HRPRIIAMTANAMQGDRELCLDAGMDDYISKPIRMPEL 1266
Query: 1213 YTAVA 1217
A+A
Sbjct: 1267 VEALA 1271
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 21/142 (14%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L GK++L+VDDN NR++ G R A+D L FD +D+QMP+
Sbjct: 1006 LAGKRVLIVDDNATNRQILTRQALFWGMKPKAASSAREALDWLQNSEMFDIAILDMQMPQ 1065
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG IR + + + E M ++G V + K
Sbjct: 1066 MDGITLASYIRGI-------VKNREFPLVMLTSIGRQEVDL--------------PDKVP 1104
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
+++KP + LY +A F
Sbjct: 1105 FAAFLNKPIKQSYLYNVLAGIF 1126
>gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
12809]
gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
12809]
Length = 1005
Score = 269 bits (688), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 194/632 (30%), Positives = 308/632 (48%), Gaps = 101/632 (15%)
Query: 595 INRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA 654
INR Q+ N ++ + + AE A AKS FLA +SHEIRTP+NG++G+ ++++D EL
Sbjct: 248 INR--QLLNTNKDLAKARDAAEQASKAKSSFLANMSHEIRTPLNGIIGLTKLMLDLELSN 305
Query: 655 AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQ 714
Q DY + S K L+ ++NDVLD +KIE+G+L + F V ++ LF+ K +
Sbjct: 306 KQKDYMRKIDRSAKALLGILNDVLDLSKIEAGKLRIDNHDFVFESVFKSIDDLFTIKIEE 365
Query: 715 KGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVD 774
KG+EL + +P+ + GDP R +Q++ NLV N++KFT D+G I H+ +V D
Sbjct: 366 KGLELFFEIDPEIPQHLTGDPLRIKQVLINLVSNAVKFT-DEGEI----HIKAEVTEITD 420
Query: 775 VKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
SD I +L +V
Sbjct: 421 ----------------SD-----------------------------------ISILFSV 429
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
DTGVGIP +IFT F Q D +++R Y GTG+GL+I++ LV +MGG + S+ G
Sbjct: 430 RDTGVGIPANELEKIFTAFTQVDETSTRRYEGTGLGLAITKNLVSMMGGTVTVESDINMG 489
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
S FSF +T L + + G++ LV+DDK E+ R L+ V
Sbjct: 490 SIFSFKLT--------LQIPVNAVSSNPNNLYGMKTLVVDDKETSREILRKILESWSFEV 541
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ A + A L+ P LVL+D + + G +++ R G+
Sbjct: 542 YTAKDGESALK-LAQAEHEKGSP-FHLVLVDWKMPGMD-GFETAEKIREFSRDSGIH--- 595
Query: 1015 NLPKIFLLATSISETDRDELKS--DGIVTLLTKPLRLSVLIGCFQ--EDPESSKKLQQKR 1070
KI ++ + E + E S D +L+KP+ S+L + P++S + +
Sbjct: 596 --DKIIMIMVTAYEKELTEKMSGNDNFNFVLSKPVTPSILFDSIVNIQYPKNSAEAETYN 653
Query: 1071 K--KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
+ K G+ + GK +L+V+DN VNR VA+ L+K G V G+ AV+K+ +D
Sbjct: 654 EVAKAYPGNDIGGKSVLLVEDNSVNRLVAQETLQKFGLTVEVALNGKDAVEKV-KSKKYD 712
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
A MD+ MP MDG++AT +IR + ++ +PI+A+TAD +
Sbjct: 713 AVLMDIHMPVMDGYRATAEIRQIFDK--------------------KQLPIIALTADALD 752
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E+C GM+D++SKP E L+ + ++
Sbjct: 753 THKEKCFAVGMNDHLSKPINIEILFKVLCKWL 784
>gi|428319759|ref|YP_007117641.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428243439|gb|AFZ09225.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1700
Score = 269 bits (687), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 196/620 (31%), Positives = 301/620 (48%), Gaps = 75/620 (12%)
Query: 605 YHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAH 664
+ + + + A A KS FLA +SHEIRTPMNGV+GM +L+ T L QLD+ QT
Sbjct: 1005 FEQAQQAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLLLKTNLTPEQLDFVQTLK 1064
Query: 665 NSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724
SG++L+S+IND+LD +K+E+G + E + F+L ++ VL L ++ A +KGIE+ +
Sbjct: 1065 LSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEKGIEVVALID 1124
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSL 784
VP + GD R RQI+TNL+ N+IKFT + G + + V A + +L S
Sbjct: 1125 SDVPVQIKGDAARLRQILTNLINNAIKFT-EAGEVVIEVANASN--------PGLLAAS- 1174
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTM--EQLGRIKLLVTVEDTGVGIP 842
EN K+L+N + E + LL V DTG+GI
Sbjct: 1175 --------------------------ENQKILENIEKLKIENNDLMLLLFKVTDTGIGIA 1208
Query: 843 LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902
E + ++F F Q D+ST+R YGGTG+GL+IS+ LVELMGG+IG S PG GSTF FTV
Sbjct: 1209 PEDKKKLFQSFTQVDASTTRKYGGTGLGLAISKELVELMGGQIGVESTPGQGSTFWFTVP 1268
Query: 903 FTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDK-SIRAEVTRYHLQRLEMAVHVANS-M 960
+ ++ + + V G + LV DK ++R + R + V N M
Sbjct: 1269 TVKENLTAVGTACEVNLETV--LAGRKMLVASDKPTVRKLLVRMAVLWGMEVEEVENGWM 1326
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
+A Y + S+ +VL+D + + G + + E + K
Sbjct: 1327 TIASLY----KAVSLNSPYDIVLVDIQLPEMVAGSLERLRIS--------EPAMQQTKWV 1374
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED-------PESSKKLQQKRKKP 1073
+L ++ + L + G LTKP++ L C E L R
Sbjct: 1375 VLTSTNQLAEAKRLVNSGFSGYLTKPVKAHRLFDCLANAIAPMTLMDEPRANLTSNRASA 1434
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L +IL+V+D +N++V L+ G + G A+ + +D MD
Sbjct: 1435 IDNRELASLKILLVEDTPINQKVGLNQLRVLGCTADVANNGAEAL-SMVALKKYDIVLMD 1493
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNE 1192
QMP +DG++AT ++R E +A+ GN+ ++AMTA+ ++ E
Sbjct: 1494 CQMPVLDGYEATRELRRRE------------AADAAGNMEPHQKTVVIAMTANALKGDRE 1541
Query: 1193 QCMKCGMDDYVSKPFEDEQL 1212
+C+ GMDDY+SKP E+L
Sbjct: 1542 KCLAAGMDDYISKPISIEKL 1561
>gi|428221149|ref|YP_007105319.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
gi|427994489|gb|AFY73184.1| PAS domain S-box [Synechococcus sp. PCC 7502]
Length = 1257
Score = 269 bits (687), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 211/664 (31%), Positives = 312/664 (46%), Gaps = 116/664 (17%)
Query: 563 FKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAK 622
++ P W +I + + + L + +A + +QV+ E+ K AEAA+ AK
Sbjct: 570 YQNSAPRTWKENEVAIAIQIGSQLGISVKNAEL--FSQVQKQALELKVAKEAAEAANQAK 627
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S+FLA +SHEIRTPMN V+GM +L+DT+L+ Q ++ +T G L+++IND+LD +K
Sbjct: 628 SEFLAMMSHEIRTPMNAVIGMTGLLLDTQLNNEQRNFVETIRMGGDALLNVINDILDFSK 687
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
IE+ R+E E PF + ++ +L LF+ K +K IELA + ++P V+ GD GR RQI+
Sbjct: 688 IEANRMELEIEPFSIQACVEEILDLFAPKITEKKIELAALIDPKLPSVINGDAGRLRQIL 747
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
NLV N IKFT+ KG + + V ++ S VD
Sbjct: 748 INLVSNGIKFTE-KGEVTIVVTYIEN--SAVDC--------------------------- 777
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
FK+ D TG+GI E R+F PF QADSS +R
Sbjct: 778 -------LVQFKIKD-------------------TGIGIKDEQIGRLFQPFAQADSSITR 811
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922
YGGTG+GL IS+ L E+MGG + S+ G GSTFSFT+ G +P+
Sbjct: 812 RYGGTGLGLVISKRLCEMMGGTLTVNSQIGVGSTFSFTIPVACGHD----------LPET 861
Query: 923 ---SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQL 979
+ +G R L++DD + + LQ M V A + A L + P
Sbjct: 862 ILEDDLKGKRILIVDDNATNRHILTIQLQGWGMLVQSAGLGREALDIL------EIDPNF 915
Query: 980 ALVLID---KDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKS 1036
L ++D ++ E+ + L E P I L + K
Sbjct: 916 DLAILDLKMPEINGAELAIALQ------------EKGHTFPIILLTSLDYHR------KI 957
Query: 1037 DGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRV 1096
+ L+KP++ S L+ + P + L K QIL+V+DN +N++V
Sbjct: 958 EAAAATLSKPVKSSQLLKTLLRIFSLHGSEVTEISHPQVSGLTKPLQILLVEDNAINQKV 1017
Query: 1097 AEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRH--LENE 1154
A L++ G G+ A+ +T FD FMD+ MPEMDG AT IR L+N
Sbjct: 1018 AVAMLERFGYNPAIAGNGKEAI-VMTEQQRFDLIFMDIHMPEMDGLTATRIIRSQDLQN- 1075
Query: 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYT 1214
I +G GN I+AMTA+V Q + +C + GMDDY+SKP E+L
Sbjct: 1076 ----IKNGR------GN----RPRIVAMTANVFQEAIAECFEAGMDDYISKPVLTEELAK 1121
Query: 1215 AVAR 1218
+ R
Sbjct: 1122 VIER 1125
>gi|359447438|ref|ZP_09237034.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
gi|358038719|dbj|GAA73283.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
Length = 789
Score = 269 bits (687), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 202/657 (30%), Positives = 318/657 (48%), Gaps = 115/657 (17%)
Query: 571 WTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVS 630
WT N ++ I L+G + H++ RI E+++ K AE A +AKS+FLA++S
Sbjct: 238 WTQ-NEEGFLIAIGALIGSL-HSSEQRI----ETEAELVKAKEAAEQAVIAKSEFLASMS 291
Query: 631 HEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEP 690
HEIRTPMNGVLGML ++ T LD Q + + A +S + L+ +IND+LD +KIE+G+L+
Sbjct: 292 HEIRTPMNGVLGMLNLIQTTSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDI 351
Query: 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSI 750
E + F+L +L ++ F+ KA +L + + ++ DP R RQI+ NL+ N+I
Sbjct: 352 ENIQFNLPKLLGEIVESFALKAESNNTQLILDTTHVSTSEIVCDPNRLRQILNNLIANAI 411
Query: 751 KFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810
KFTQ+ G + V+ +
Sbjct: 412 KFTQN-GQVLVTATIE-------------------------------------------- 426
Query: 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIG 870
K +DNT T+E + DTG+GI L+ Q ++F F QAD+ST+R YGGTG+G
Sbjct: 427 ---KTIDNT-TLE--------CAIIDTGIGISLDKQKQLFDSFTQADASTTRQYGGTGLG 474
Query: 871 LSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRA 930
L+I + L ELMGGE+ S P GSTF+F+V T + +D Q + D + R
Sbjct: 475 LAIVKQLCELMGGEVSVNSLPNEGSTFAFSVKIT----SVID---QAFDLDCQHIQAKRI 527
Query: 931 LVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD 990
L++D+ + A +T L V V + +Y+S+ + P +A +ID +
Sbjct: 528 LIVDNSEMNATITEKQLMLWGADVSVVCDYEEVETYISN--HQQMPPDVA--IIDSSFLE 583
Query: 991 KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRL- 1049
V H + ++ K LE S L+ +S + D L+ KPL
Sbjct: 584 P----VAHP--QAEKLKHFLEKSH-----ILIMAPMSSSKSSLFYGDKETALIFKPLTAI 632
Query: 1050 ----SVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHG 1105
+++ G E P+ + K + GH +L+V+DN VN+ VA LK+
Sbjct: 633 GLYDTLVKGTLAEQPKEVELSAMNTPKKAKGH------VLLVEDNKVNQVVAGALLKQAE 686
Query: 1106 AIVTCVDCGRAAVDKL--TPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163
+ G A+ KL + + MD QMP MDG+QAT IR E +A E
Sbjct: 687 LTFDIAEDGEDALTKLNQATANTYQLILMDCQMPIMDGYQATMAIR-------EGLAGQE 739
Query: 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ A +PI+A+TA+ + E+C+ GM+DY+SKP + ++ + ++
Sbjct: 740 NRA----------IPIIALTANAMHGDKEKCLNAGMNDYLSKPLDGPAMHAKLQQWL 786
>gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
Length = 1323
Score = 269 bits (687), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 203/621 (32%), Positives = 299/621 (48%), Gaps = 110/621 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ E K A+A AK FLA +SHEIRTPMN +LGM + ++T+LD Q Y +
Sbjct: 591 QELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTKLDTTQRKYVTRINE 650
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S K+L+ +IN++LD +KIE+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 651 SAKNLLGIINEILDFSKIEAGKLNVERIDFNLDDVLDNVTAVISLKAQEKGIEFLMDIDP 710
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P +IGDP R Q+I NL GN++KFT +G I ++
Sbjct: 711 HIPLGLIGDPLRLGQVIVNLCGNAVKFTH-QGEIVITAR--------------------- 748
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
V +D+ Y TL GF V+DTG+GI E
Sbjct: 749 -VSQLNDQ-YVTL-GF-------------------------------AVKDTGIGIAKEK 774
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
+F F QADSS +R YGGTG+GLSIS+ LVELMGG+I S G GS F F+V
Sbjct: 775 LTDLFNAFSQADSSITRQYGGTGLGLSISKQLVELMGGQISVRSTEGEGSIFEFSVVCGL 834
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM-AVHVANSMQLAC 964
E K + V R LV+DD + L + V V+N + A
Sbjct: 835 QE-----AKMRDIAQPVHGLADKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFE-AL 888
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
S + + ++ +D W+ G+ +L + + G R K FL+
Sbjct: 889 SEIQH-------KKFDMLFVD---WNMP-GMNGIELLTRVQSLG----LREKTKCFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
+ + D + L+ KP+ S L+ +S ++ R K S H
Sbjct: 934 YGRDINLDGENGKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKHSEHHPHSKPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
KGK +L+V+DN VN+ VA G L+ G VT + G+ A++K+ FD MD+QMP M
Sbjct: 990 KGKSVLLVEDNEVNQEVALGLLQDTGLRVTVANNGQEALEKIEQAR-FDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQCMKCG 1198
DG AT +IR + W +PI+AMTA+ + E+C + G
Sbjct: 1049 DGITATKRIRADKR---------------------WKDLPIVAMTANAMTVDIERCTQAG 1087
Query: 1199 MDDYVSKPFEDEQLYTAVARF 1219
M+D++SKP + ++ Y+ + +F
Sbjct: 1088 MNDHLSKPIDIDKFYSVLKQF 1108
>gi|390949604|ref|YP_006413363.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390426173|gb|AFL73238.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1347
Score = 269 bits (687), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 201/626 (32%), Positives = 301/626 (48%), Gaps = 108/626 (17%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
Q+E E+ A AEA+ KS+FLA +SHEIRTPMNGV+GM ++L++T L+ Q +
Sbjct: 644 QMERQNRELDRALAEAEASTQDKSRFLANMSHEIRTPMNGVIGMTRLLLETGLNEEQHRF 703
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
A+ A SG+ L++LIND+LD +KIE+G+LE + + F L++V+ L + A K +EL
Sbjct: 704 AEIARTSGESLLALINDILDFSKIEAGKLELDLLSFDPRGTLEDVVELLAFNAQSKELEL 763
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+ VP V GDP RQI+ NL GN+IKFT H V++H V++ DKV
Sbjct: 764 TYQIDPDVPVSVRGDPRYLRQILVNLAGNAIKFTD---HGEVAIH----VKAATKTADKV 816
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
L + + D+G+
Sbjct: 817 L-------------------------------------------------IRFEIHDSGI 827
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GIP + + +FT F Q D+S++R +GGTG+GL IS+ LVELM G IG S GS F F
Sbjct: 828 GIPEDLRGHLFTAFSQLDNSSTRRFGGTGLGLVISKQLVELMNGAIGVESRAERGSIFWF 887
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
T F + P +P ++ +G + LV+DD + + L+ + AN+
Sbjct: 888 TAEFELPAVQPVAP-----LPTYADLKGGKVLVVDDHATNRLLAGTLLRSWGCRIEEANN 942
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
A +L + Q AL+ + D GL L ++KQ EI ++
Sbjct: 943 GAEALEWLHQAARAADPFQAALLDLKMPAMD---GLELGNLIKQDP-----EIRDT--RL 992
Query: 1020 FLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC-----------FQEDPES--SKKL 1066
LL + ++ D ++ G LTKPLR +L C + P + ++
Sbjct: 993 VLLTSLVARGDAARMQQAGFDGYLTKPLRQQLLHDCLALVMGREVATLRAAPPAIVTRHT 1052
Query: 1067 QQKRKKPSLGHLLKGK-QILVVDDNMVNRRVAEGALKKHGAIVTCVDC-GRAAVDKLTPP 1124
+ +LG + +IL+VDDN+ N+ VA G LK+ G T G A++ L
Sbjct: 1053 LADINRQALGASASSQARILIVDDNLTNQIVATGILKQLGYSRTATASNGLEALEALA-R 1111
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH--VPILAM 1182
++ MD QMP+MDGF+ +IR G G + VPI+AM
Sbjct: 1112 DPYELVLMDGQMPDMDGFETARRIR-------------------LGEAGTANRDVPIVAM 1152
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFE 1208
TA V+Q E+C++ GMDDY+SKP +
Sbjct: 1153 TALVMQGDRERCLEAGMDDYLSKPVQ 1178
>gi|440684403|ref|YP_007159198.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428681522|gb|AFZ60288.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1382
Score = 269 bits (687), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 206/619 (33%), Positives = 308/619 (49%), Gaps = 101/619 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A++ K +FLAT+SHEIRTPMN V+GM +L+DT+L QL++A+ NSG ++
Sbjct: 715 KEEAEIANLTKGEFLATMSHEIRTPMNAVIGMTGLLLDTQLTPQQLEFAEIIRNSGDAML 774
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+LIND+LD +KIESG+LE E F+L L+ L L + KA++KG+ELA + EV+
Sbjct: 775 TLINDILDFSKIESGKLEIEEQIFNLRTCLEESLDLVAPKASEKGLELAYLMYPETYEVI 834
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GD R RQI+ NL+ N+IKFT + G + +SV + ++ +S
Sbjct: 835 SGDVTRLRQILVNLLSNAIKFT-NSGEVILSVT--------------------SQIKDQS 873
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
D + S +N QL IK TV+DTG+GIP + R+F
Sbjct: 874 D------------SEFISQQN----------SQLYEIKF--TVKDTGIGIPEDKMHRLFK 909
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
PF Q D+ST+R YGGTG+GL IS+ L ELMGG++ S G GS F FT+ ++ +
Sbjct: 910 PFSQVDASTTRHYGGTGLGLVISKRLTELMGGKMWVESTVGQGSNFIFTIVSPFVGKSDI 969
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+ + R L++DD + Q M A S + A YL +
Sbjct: 970 KYDYHHH----HSIHNKRLLIVDDNINNRQALILQSQSFGMVGVSAASGKEALKYLQE-- 1023
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI----S 1027
Q + ++D + + + GL L +++ L LP + L TSI S
Sbjct: 1024 -----QQFDIAILDMQMPEMD-GLTLASEIRK------LNNCERLPLVML--TSIGDGQS 1069
Query: 1028 ETDRDELKSDGIVTLLTKPLR----LSVLIGCFQED----PESSKKLQQKRKKPSLGHLL 1079
T+ L + V LTKP++ L++LI + + E++ + Q + + +
Sbjct: 1070 NTNYQNLNLE-FVAYLTKPIKKANLLNILINISKNNVVMPKENTYQDTQSKFDSHMAEKI 1128
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
K ILV +DN+VN++VA L++ G G + L ++D MDLQMPEM
Sbjct: 1129 PLK-ILVAEDNVVNQKVAINILQRLGYRADVAANGLEVLVALR-RQSYDVVLMDLQMPEM 1186
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP-ILAMTADVIQASNEQCMKCG 1198
DG AT QI + L P I+AMTA+ +Q E+C+ G
Sbjct: 1187 DGLTATRQI--------------------YKEWPLSKRPWIIAMTANAMQGDREKCLAAG 1226
Query: 1199 MDDYVSKPFEDEQLYTAVA 1217
M+DY +KP E+L A++
Sbjct: 1227 MNDYTTKPIRIEELTKALS 1245
>gi|427421170|ref|ZP_18911353.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425757047|gb|EKU97901.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 911
Score = 269 bits (687), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 203/646 (31%), Positives = 305/646 (47%), Gaps = 119/646 (18%)
Query: 594 AINRIA-QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
A+N++A Q++ + + + A AA +KS FLA +SHEIRTPMNG+LGM +L+DT L
Sbjct: 239 ALNQMADQLQGNLVGLAIARDEALAAAQSKSDFLANMSHEIRTPMNGILGMSGLLLDTNL 298
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
Q ++++T N LI++IND+LD +KIESG+L+ E PF L ++ L L ++KA
Sbjct: 299 TQEQRNFSETIWNCCNSLITIINDILDFSKIESGKLDMEECPFELRTCIEESLDLLATKA 358
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD-DVRS 771
+K +ELA +P+ ++GD R RQI+ NLVGN+IKFT + G I V VH V S
Sbjct: 359 AEKNLELAYLAEPGIPDRLVGDVTRLRQILVNLVGNAIKFTHE-GEILVKVHTKPFTVVS 417
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
+ + D+ +EK ++ F V D
Sbjct: 418 QTHI-DQDIEKDYVTIH------------FDVQD-------------------------- 438
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
TG+GIP + R+F F Q DSST+R YGGTG+GL+IS+ L ELMGG + S
Sbjct: 439 -----TGIGIPTDKMNRLFKSFSQVDSSTARKYGGTGLGLAISKQLCELMGGNMSVTSVV 493
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G GS FSF++ LD + + + + RG R L++DD + ++ Q +
Sbjct: 494 GEGSCFSFSIVVEVLPSLELDIESEAH-----QLRGKRVLIVDDNATNRKMLALQTQSWD 548
Query: 952 MAVHVANSMQLACSYLS---DTCSTSVL----PQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004
M VA S A LS D+ ++L P++ + + ++ K G
Sbjct: 549 MQSTVAQSAYEALGILSCHQDSFDVAILDMQMPEVDGLTLANEIRTKPYG---------- 598
Query: 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ------- 1057
+ LP + L + E + LK L KP++ S L
Sbjct: 599 ---------KTLPLVMLTSVGKPELAANALKKANFQAFLNKPIKQSRLYNVLNQVFVDQP 649
Query: 1058 ---EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCG 1114
+ PE + + + H L+ ILV +DN+VN+++ L K G V G
Sbjct: 650 VKIQTPEVTNEADLYDSTLAQKHPLR---ILVAEDNLVNQQLIRQWLGKMGYRPDLVGNG 706
Query: 1115 RAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL 1174
A+D L +D MD+ MPEMDG AT EI +Q
Sbjct: 707 YEAIDAL-KRQTYDVVLMDVHMPEMDGLTATA-------EICKQ---------------- 742
Query: 1175 WHVP----ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
W V I+A+TA+ ++ E+C+ GM++Y+SKP L A+
Sbjct: 743 WSVDKRPYIIALTANAMKGDRERCLNAGMNNYISKPIHVPDLVKAL 788
>gi|428307527|ref|YP_007144352.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
gi|428249062|gb|AFZ14842.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Length = 865
Score = 269 bits (687), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 198/617 (32%), Positives = 299/617 (48%), Gaps = 90/617 (14%)
Query: 609 MELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGK 668
+ L+ A A AKS+FLAT+SHEIRTPMNGV+GM +++++T+L + Q + +T +SG+
Sbjct: 173 LALREAALEATRAKSEFLATMSHEIRTPMNGVIGMTELMLNTKLTSQQQHFVETIRHSGE 232
Query: 669 DLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVP 728
L+++IND+LD +KIES +LE E PF++ + L+ L + + KA +K +ELA + P
Sbjct: 233 ALLTIINDILDFSKIESQKLELEKQPFNILNCLEESLDILAPKAAEKNLELAYIIQPNTP 292
Query: 729 EVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788
+ +IGD R RQII NL+ N++KFT+D G + VS+
Sbjct: 293 KKLIGDVTRLRQIIINLLSNAVKFTKD-GEVLVSI------------------------- 326
Query: 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
T P + + + K N E L V+DTG+GIP E R
Sbjct: 327 --------TSHQLPAGENIEQNPHLK-----NCYE------LQFAVKDTGIGIPTERMDR 367
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
+F F Q DSST+R YGGTG+GL+IS+ L ELMGG + S G GS F FT+
Sbjct: 368 LFQSFSQVDSSTTREYGGTGLGLAISKRLTELMGGRMWVESTVGQGSIFYFTIIAPSVAD 427
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
SL + +P + G + L++DD + E+ Q M + ANS A LS
Sbjct: 428 GSL--AQENIIP--PQLVGKQLLIVDDNATNREILMLQGQSWGMLTYAANSGAEALDLLS 483
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
+ S + ++D + + + GL L R GL LP + L + E
Sbjct: 484 EGKS------FDMAILDMQMPEMD-GLTL------AREIRGLPKGEKLPLVMLSSLGKLE 530
Query: 1029 TDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK------ 1082
E+ + L KP++ S L + + R SL +
Sbjct: 531 IG-SEVDAVKFAAFLYKPIKQSQLFNTLNDILAQQPIKVETRNCASLHTSFDSQLAKQLP 589
Query: 1083 -QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+IL+ +DN VN++VA L++ G + G ++ L +D MD+QMP MDG
Sbjct: 590 LRILLAEDNSVNQQVALYFLEQIGYLADVAANGLEVLEALQ-RQAYDVVLMDVQMPVMDG 648
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
T Q IN + A I+AMTA+ +Q E+C++ GMDD
Sbjct: 649 LATTRQ-------INAEYAPTARPR------------IIAMTANTMQGDKEECLQAGMDD 689
Query: 1202 YVSKPFEDEQLYTAVAR 1218
Y+SKP + +LY A+++
Sbjct: 690 YISKPIQLAELYDALSK 706
>gi|218439787|ref|YP_002378116.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
gi|218172515|gb|ACK71248.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
Length = 936
Score = 269 bits (687), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 200/608 (32%), Positives = 299/608 (49%), Gaps = 98/608 (16%)
Query: 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLD 679
+AKSQFLA V HE+RTP+N V GM +L+DT+L Q ++ NSG+ L+++IN++LD
Sbjct: 271 LAKSQFLAMVGHELRTPLNAVTGMTGLLLDTKLTNQQREFINIIRNSGETLLTMINNILD 330
Query: 680 QAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFR 739
AKIE+ +LE E PF L ++ L LF +A+++ +ELA + P +IGD R +
Sbjct: 331 FAKIEANKLELEETPFELGQSIEEALHLFVPQASERKLELAYLIEPHTPNAIIGDVTRLK 390
Query: 740 QIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLS 799
QI+ NL+ N++KFT + G + V V+ V + + + KS +Y
Sbjct: 391 QILVNLLSNAVKFT-ESGEVVVYVN-----------ATPVTQHPVTPQKDKSSPLY---- 434
Query: 800 GFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS 859
++ V+D+G+GIP E R+F F Q D+S
Sbjct: 435 -----------------------------EIRFAVKDSGIGIPREKMDRLFKSFSQVDAS 465
Query: 860 TSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYV 919
TSR YGGTG+GL+IS+ L E+MGG++ F S G GSTF FTV +SL
Sbjct: 466 TSRKYGGTGLGLAISKRLTEMMGGKMWFHSVEGKGSTFYFTVIAQAAPSSSLANS----- 520
Query: 920 PDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQL 979
P E G + ++I D I + ++ H ANS + TCS P+
Sbjct: 521 PSAEEMLGGKRMLIVDDIITNQ---------KILTHQANSWGML------TCSVQSAPK- 564
Query: 980 ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI----FLLATSISETDRDE-L 1034
AL + K W ++ ++ M K EI RNLP +L +S+ + + E +
Sbjct: 565 ALEWL-KQGWAFDVVILDMNMPKIDGLTLAQEI-RNLPHCKRLPLVLLSSLGKPEMTEKV 622
Query: 1035 KSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDN 1090
+ +LTKP++ + VL+ +E P + P L L + ILV +D
Sbjct: 623 EKIEFAAILTKPIQQAQLYDVLVRVLREKPIIVNHGLTDSEHPRLADTLPLR-ILVAEDI 681
Query: 1091 MVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRH 1150
VN+ V L+K G + V G ++ L H +D MD++MPEMDG AT QIR
Sbjct: 682 NVNQEVIRLQLEKLGYLPDIVSNGVEVLEALR-RHPYDVILMDVRMPEMDGMSATHQIRK 740
Query: 1151 LENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDE 1210
E NV I+AMTAD +Q E+C++ GMDDY+SKP E
Sbjct: 741 ----------------EWMPNV---RPRIIAMTADAMQGDREKCLESGMDDYISKPIRLE 781
Query: 1211 QLYTAVAR 1218
+L+ A+++
Sbjct: 782 ELHRAISK 789
>gi|34497036|ref|NP_901251.1| sensor/response hybrid [Chromobacterium violaceum ATCC 12472]
gi|34330322|gb|AAQ59257.2| probable sensor/response hybrid [Chromobacterium violaceum ATCC
12472]
Length = 664
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 196/618 (31%), Positives = 300/618 (48%), Gaps = 107/618 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
++ E + AEAA+ AKS+FLA +SHEIRTP+NGV+GM +L T LD Q Y H S
Sbjct: 14 QLTEARDAAEAANRAKSEFLAVMSHEIRTPLNGVIGMTDLLQRTRLDDRQRHYVSVVHRS 73
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G+DL+++I+D+LD +KIE+G+ E + PF L+ +++ ++ + A KG+EL +
Sbjct: 74 GEDLLAIISDILDFSKIEAGKFELDRQPFCLNLLVEEIVERLAPVAYGKGLELMCALP-L 132
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P V+GD R Q++TNLVGN+IKFT+ GH+
Sbjct: 133 MPVEVVGDGKRLGQVLTNLVGNAIKFTE-SGHVLA------------------------- 166
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
K D+ + +G + ++V+DTG+GI + Q
Sbjct: 167 ---KVDRAGESDAG---------------------------VTCRISVKDTGIGIAPDQQ 196
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F PF QADSST+R +GGTG+GL IS+ LV +MGG I SEPG+GS F FT+T
Sbjct: 197 KRLFKPFSQADSSTTRRFGGTGLGLVISQRLVGMMGGRIELESEPGSGSEFHFTLTLPRA 256
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+ Q P + +R LV+DD E+ L V + + A +
Sbjct: 257 SDS-------QLCPPAEDVARMRVLVLDDNVTNLEILEQQLASWHCRVAAFHRPREALDW 309
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
L+ LI D+ E+ GL+ L + R + + P +L+++
Sbjct: 310 LTAGNEVD--------LIISDMMMPEMDGLMF---LGEARER----LGEAAPPAIILSSA 354
Query: 1026 ISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH---LLKGK 1082
+ + S +LTKP+R S L + ++ K++ P GH L G+
Sbjct: 355 ADDFQKLTGASRLARQVLTKPIRRSDLYNALLQLGSAAAKVE---PAPD-GHDQPRLSGR 410
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+L+V+DN+VN+ +A L+ G V G A+ +L FD MD +MP MDG+
Sbjct: 411 -VLLVEDNLVNQELATAMLRNLGCEVELARNGEEAL-RLCEAGGFDLALMDCEMPVMDGW 468
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
QAT IR E G + I+A+TA+ E+C++ GMDDY
Sbjct: 469 QATGAIRARERP------------------GGARLTIVALTANAGLGERERCLQAGMDDY 510
Query: 1203 VSKPFEDEQLYTAVARFF 1220
+SKPF +L ++R+
Sbjct: 511 LSKPFTQNELGAVLSRWL 528
>gi|117926800|ref|YP_867417.1| Hpt sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610556|gb|ABK46011.1| Hpt sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 920
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 202/686 (29%), Positives = 322/686 (46%), Gaps = 122/686 (17%)
Query: 554 SRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKA 613
S+ E+ R Q V AI G +L+ H ++R + N E+ K
Sbjct: 95 SKNEELGQRMSQM--VQIKAIRNEAGERYCVILI-HDITNTVSREQMLRNQARELHSAKD 151
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
A+ A+ AKS FLA +SHEIRTPMN ++GM + + T+L+A Q DY H+S L+ +
Sbjct: 152 EAQQANRAKSDFLANMSHEIRTPMNAIIGMSHLALKTDLNAKQRDYVGKIHDSALLLLGI 211
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IND+LD +KIE+G+L E V F+L DVL NV +L S K +KG+E++ V VP ++G
Sbjct: 212 INDILDFSKIEAGKLSMESVAFYLDDVLSNVANLVSMKVEEKGLEISFQVDRGVPLHLVG 271
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
DP R QI+ NLV N++KFT ++G+I V++ D S V V+ +V + + + + D+
Sbjct: 272 DPLRLGQILINLVNNAVKFT-EQGNIVVAITAELDCESHVVVQFQVRDSGIGMTKQQIDR 330
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
++ + F D++ T
Sbjct: 331 LF---------------QAFSQADSSTT-------------------------------- 343
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
R YGG+G+GLSI + LV +M G+I S+PG GS F+FT ++
Sbjct: 344 --------RRYGGSGLGLSICKRLVGMMDGDIWVESQPGRGSQFTFTAQLVSQRQD---- 391
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
+ + +P + GLR LV+DD + ++ L V +++ L +
Sbjct: 392 RRRFRLPSM-HLVGLRVLVVDDNPVVRQILVESLAIFSFCVEALATVEEVIEALGQAIAR 450
Query: 974 SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL----EISR-----NLPKIFLLAT 1024
+ GLV+ + + KGG+ EI+R LPK+ L+
Sbjct: 451 G----------------EPYGLVV--LAGRFGGKGGVALAGEINRCYPQLTLPKMVLVGA 492
Query: 1025 SISETDRDELKSDGIVTL----LTKPLRLSVLIGCFQEDPESSKKLQQ---KRKKPSLGH 1077
S +RD++ + L +TKP+ ++L E + QQ R +
Sbjct: 493 S----ERDDVVAMAGAQLVELFVTKPITQTILFEGVLEVLGYVVQAQQHAGGRDRTREKR 548
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
+L G QIL+V+DN +N++VA L+ G V + G+ AVD++ FDA MD+QMP
Sbjct: 549 VLSGCQILLVEDNEINQQVACELLQGEGVTVVVANSGQQAVDRVLSGERFDAVLMDIQMP 608
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG++AT IR +PI+AMTA+ + E+C+
Sbjct: 609 GMDGYEATQVIRKQPQ--------------------FSDLPIIAMTANAMAGDRERCLAA 648
Query: 1198 GMDDYVSKPFEDEQLYTAVARFFMSG 1223
GM+D++ KP + + L+ + R+ + G
Sbjct: 649 GMNDHIGKPIQPKLLFETLGRYVIKG 674
>gi|334704936|ref|ZP_08520802.1| two-component system sensor protein [Aeromonas caviae Ae398]
Length = 940
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 207/620 (33%), Positives = 292/620 (47%), Gaps = 117/620 (18%)
Query: 613 ARAEAADVA--KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDL 670
A+ EAA +A K F+A +SHEIRTPMN ++G+ +L LD Q + H +G+ L
Sbjct: 334 AQQEAARLAQVKGDFIANMSHEIRTPMNAIMGLTYLLEQGGLDDGQHALVRKIHQAGQAL 393
Query: 671 ISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV 730
+ +IND+LD +KIESGRLE E VPF L +VLD+V ++ S+ QK +EL + +
Sbjct: 394 LGIINDILDFSKIESGRLELERVPFSLEEVLDHVAAIMSTCVGQKHLELVVSSAPEPVSH 453
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHK 790
+IGD R Q++ NL GN+IKFT+ R +V+VK VLE
Sbjct: 454 LIGDALRLEQVLLNLTGNAIKFTE---------------RGEVEVK-VVLEA-------- 489
Query: 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850
EQ G LL V DTG+GIP E Q IF
Sbjct: 490 --------------------------------EQDGMATLLFRVRDTGIGIPPEQQANIF 517
Query: 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER-N 909
F QADSSTSR +GGTG+GL+ISR LV LMGG+IG SE G GS F F V + ER
Sbjct: 518 NAFSQADSSTSRRFGGTGLGLTISRRLVNLMGGDIGVTSELGKGSEFWFRVRLEQVERPE 577
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
+L+ + Q + L+ DD + + + L V S + A +L
Sbjct: 578 ALNERLQH----------ISLLIADDNQVTRDALSMTVGSLGWQSRVVESGEQALHHLLR 627
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
+ L ++ D E L + +QQ R I ++ATS S+
Sbjct: 628 QGERFDVILLDWIMPGMD--GLETCLAIRRAFEQQERS----------PIIIMATSYSQ- 674
Query: 1030 DRDEL----KSDGIVTLLTKPLRLSVLIGC----FQEDPESSKKLQQKRKKPSLGHLLKG 1081
DEL SD + +L KP+ S L E E L+ +++ L G
Sbjct: 675 --DELMHRPGSDQVDLVLHKPVTGSSLYNAVARLIHEKREHVDPLESGQRRLR----LPG 728
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGA-IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
IL+VDD+ +N VA L++ GA ++T +D RA P D MD+QMP MD
Sbjct: 729 VHILLVDDSDINLEVATRLLQREGAEVITAIDGERALACLADPARRIDLVLMDVQMPVMD 788
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G++AT ++R L G P+LA+TA V + E + GM+
Sbjct: 789 GYEATRRLRLLP--------------------GREETPVLALTAGVFKDQREAALASGMN 828
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
D+++KP + EQL + R+
Sbjct: 829 DFIAKPLDVEQLIATLLRYL 848
>gi|218778728|ref|YP_002430046.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218760112|gb|ACL02578.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1022
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 201/617 (32%), Positives = 310/617 (50%), Gaps = 98/617 (15%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AEAA +AKS FLA +SHEIRTP+N V+GM ++ + +++ +T + L++L+
Sbjct: 343 AEAASLAKSDFLARMSHEIRTPLNAVVGMAELASNEKMNQNLKKIIETITSESNALVALV 402
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
N +LD +KIE+ ++E E PF L +L+++ +A +KG+E ++++ +P V GD
Sbjct: 403 NRILDFSKIEAQKMELEEFPFDLGYLLEDIADSMGLEAYKKGLEFILHINPEIPVQVKGD 462
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
PGR RQ++TNL+GN+IKFT + G +FV K +++ + EK++
Sbjct: 463 PGRIRQVLTNLIGNAIKFTSE-GEVFV----------KAELETRTDEKAI---------- 501
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
IK ++DTG+GIP E + IF F
Sbjct: 502 ---------------------------------IKF--HIQDTGIGIPEEKRGLIFEAFT 526
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD ST+R YGGTG+G +IS+ +VELMGGEIG S G GS F FTV L +
Sbjct: 527 QADDSTTRKYGGTGLGTTISKKIVELMGGEIGLESREGCGSIFWFTVV--------LALQ 578
Query: 915 WQQYVPDVS---EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+ VP +S + G + LVI++ EV + +L V A +++ A YL
Sbjct: 579 QVKRVPVISPEYDIVGKKILVIENNLSYREVIQSYLLSWGGIVDTAPNIEEAIRYLESQS 638
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET-D 1030
S P AL+++D ++ I L L LK+ + + +P I L T++ D
Sbjct: 639 SQGEKP--ALIVMDLNL-PSLIDLDLAGSLKRS------PLMKGIPLIVL--TNVGRMGD 687
Query: 1031 RDELKSDGIVTLLTKPLR-------LSVLIGCFQED-PESSKKLQQKRKKPSLGHLLKGK 1082
+ + GI L KP+R + V++G ++D P+ +L + L
Sbjct: 688 GKKCRELGIDGYLAKPVRRDDLCKVVRVVLGLARQDLPDQDSQLVTRHFASELNR--SNI 745
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
IL+V+D N+ +A L G V + G+ AV+ FD FMD+QMP MDG+
Sbjct: 746 SILLVEDYPANQFIAMEHLTSDGYRVALAENGQKAVEAFR-KKTFDLVFMDIQMPIMDGY 804
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+AT QIR LE E N +G+ S + PI+AMTA E+C++ MDDY
Sbjct: 805 EATKQIRALEAE-NAGEGNGDGSKKE-------RCPIIAMTAHAFNGYREKCLEADMDDY 856
Query: 1203 VSKPFEDEQLYTAVARF 1219
++KP ++L AR+
Sbjct: 857 ITKPISKKELLEIAARW 873
>gi|385798974|ref|YP_005835378.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens DSM
2228]
gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens DSM
2228]
Length = 921
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 186/645 (28%), Positives = 323/645 (50%), Gaps = 114/645 (17%)
Query: 594 AINRIAQVENDYH----EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMD 649
A+N++ + N+ E+ + + +A A AKS+FL+T+SHEIRTPMN ++GM ++L +
Sbjct: 371 ALNKMEEYSNELKLKNLELKQARDKAMEASRAKSEFLSTMSHEIRTPMNSIIGMAELLQE 430
Query: 650 TELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFS 709
TEL Q Y N+G+ L++LIND+LD +KIE+GR+E E F+L + ++N+ + S
Sbjct: 431 TELSEQQQKYINIFQNAGESLLTLINDILDLSKIEAGRIELEAEKFNLVETVENIAEMIS 490
Query: 710 SKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV 769
+A +KG+EL + ++ VPE VIGD R RQI+ NL+GN++KFT+ KG +F+ + + +
Sbjct: 491 LRAFKKGLELPLRIAAEVPECVIGDSERIRQILINLLGNAVKFTE-KGQVFLDLRIDSEF 549
Query: 770 RSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIK 829
+SK D K + + +T G + + +++F D+++T
Sbjct: 550 KSK-DQKQVIF------------AIKDTGIGIEKAKQKQIFDSFTQADSSST-------- 588
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
R YGGTG+GL+IS+ LVELMGG+I S
Sbjct: 589 --------------------------------RKYGGTGLGLTISKQLVELMGGKIWLKS 616
Query: 890 EPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQR 949
P GSTF F++ E N K Q F + LV+DD + + L
Sbjct: 617 TPQLGSTFYFSLPLKIVENNFKSQKSQ-----TRNFEQYKILVVDDNPTNIFILKEILAE 671
Query: 950 LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009
+ + A + Q A + ++ + Q ++L+D ++M +K G
Sbjct: 672 RGIEIGTAQNQQEALTEIAQSIEAQAPYQ--IILMD------------NFM----PQKNG 713
Query: 1010 LEISR------NLPKIFLLATSISETDRDELKSDGIVT-LLTKPLRLSVLIGCFQE---- 1058
L+ S+ +LP + ++ S + +++ +G++ + KP+R L ++
Sbjct: 714 LDTSKKIREKFDLPNLQIIILSSAYAEKNLQNREGLINDFMMKPVRKKDLFSLLEKAAAK 773
Query: 1059 -DPESSKKLQQKRKKPSLGH---LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCG 1114
+ + + +QK +K + K++L+V+DN NR + + LKK + G
Sbjct: 774 IENKKANDFKQKAEKEKVSQKDLTTANKELLIVEDNPDNRFLIKAFLKKKNYQLDIAKNG 833
Query: 1115 RAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL 1174
AV+K +D MD+QMPEM+G+QA +IR E E N++I +
Sbjct: 834 IEAVEKFKSKL-YDLVLMDIQMPEMNGYQAVNEIRKWEKE-NKKIKT------------- 878
Query: 1175 WHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
P++A+TA + + E+ +K G DD+++KP + ++LY +A++
Sbjct: 879 ---PVVALTAYALDSDKEKALKEGFDDHLTKPLKKDKLYQLIAKY 920
>gi|365092001|ref|ZP_09329252.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. NO-1]
gi|363415738|gb|EHL22864.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. NO-1]
Length = 1033
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 193/610 (31%), Positives = 285/610 (46%), Gaps = 100/610 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
+ARAE A KS FLA +SHEIRTPMN V+GM + + T+L Q DY + SG+ L+
Sbjct: 259 RARAEDASQMKSDFLANMSHEIRTPMNAVIGMSHLALATDLTPRQRDYVEKIQRSGQHLL 318
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
LIND+LD +KIE+G+LE E V F L VLDNV +L S K KG+EL V +P+ +
Sbjct: 319 GLINDILDFSKIEAGKLEVEVVDFDLRGVLDNVANLVSEKCAHKGLELLFDVDPALPDHL 378
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GDP R QI+ N N++KFT+ +G I V
Sbjct: 379 RGDPLRLGQILVNYANNAVKFTE-RGEIIV------------------------------ 407
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+V T+ D+T + L V+DTG+G+ E Q R+F
Sbjct: 408 -RVTETVR-----------------DDTGVL-------LRFEVQDTGIGLTSEQQSRLFR 442
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+ST+R YGGTG+GL+ISR L LMGGE+G S+ G GSTF FT R L
Sbjct: 443 SFEQADTSTTRKYGGTGLGLAISRKLAGLMGGEVGVQSQAGVGSTFWFTA------RLGL 496
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+ + RG LV+DD + L R+ V A+S + A + L+
Sbjct: 497 GTAHHAPLLPTPDLRGRHVLVVDDSEQARHILGEMLTRMSFTVTTASSGKEAVA-LARAA 555
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
+ P L +D + + G H L +R P ++ + + +
Sbjct: 556 EQAGRP-CELAFLDWMMPGMD-GFDTHRALASLQRP---------PHTIIVTAAGRDDVQ 604
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH-----LLKGKQILV 1086
DEL+ G+ +L+KP+ S + + + R + H + G ++L+
Sbjct: 605 DELQRAGLTLMLSKPVSPSAMFDAAMQALGGQARSADGRAAHAPRHATHLSAIAGARVLL 664
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
VDDN +N++V L G V G+ A+D L ++D MD+QMP MDG AT
Sbjct: 665 VDDNDLNQQVGAELLSGAGLAVDVAHNGQVALDMLAQT-SYDLVLMDMQMPVMDGLTATR 723
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
+R N +P+LAMTA+ + + C+ GM+ +++KP
Sbjct: 724 HLRQ--------------------NPAWADLPVLAMTANAMSHDRDLCIAAGMNGHLAKP 763
Query: 1207 FEDEQLYTAV 1216
+ + L+ +
Sbjct: 764 IDPDALFATL 773
>gi|310823304|ref|YP_003955662.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309396376|gb|ADO73835.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 1062
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 199/653 (30%), Positives = 306/653 (46%), Gaps = 125/653 (19%)
Query: 591 FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
F+A ++ + E+ + K AE A+ AK +FLA +SHEIRTPMN ++GM Q+ +D
Sbjct: 363 FNAFLDNLHGRRRSEEELRQAKESAEEANRAKGEFLANMSHEIRTPMNAIIGMTQLALDA 422
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
+ D+ A S + L+ +IND+LD +KI++GRLE E VP L++++ + +F+S
Sbjct: 423 GSPEEKRDFIVKASRSAQSLLGIINDILDFSKIDAGRLEIETVPVSLNELISGLADVFAS 482
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
A KGIEL V +P + GDP R RQI+ NL+ N++KFT G + V V
Sbjct: 483 AAQDKGIELLFDVDASLPAALAGDPLRLRQILQNLISNALKFTP-AGEVVVRV------- 534
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKL 830
+KV SG +
Sbjct: 535 ---------------------EKVAELASG---------------------------VAC 546
Query: 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
+V DTG+GI E R+F F Q DSS +R YGGTG+GL+IS+ LVELMGG IG S+
Sbjct: 547 RFSVRDTGIGIAAEQLPRLFQSFFQTDSSVTRKYGGTGLGLAISKRLVELMGGRIGVDSQ 606
Query: 891 PGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRL 950
PG GS F F +T L+ + ++ + LR LV+DD +
Sbjct: 607 PGQGSCFWFELTLA----RLLEESARVGREGLASWGALRVLVVDDNA------------- 649
Query: 951 EMAVHVANSMQLACSYLSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008
A H+ ++M + +++ + L +LA + G H ML G
Sbjct: 650 -SARHILSAMFASFGFVAHAVADGRQALEELARGM---------DGQPYHLMLIDYHMPG 699
Query: 1009 --GLEISRN---------LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057
G+E SR LP + + + + + GI + KP+ S L+ Q
Sbjct: 700 LDGIETSRRLLQRKESVPLPTVIMASMDERPIVVQQAQEAGIQAYVNKPVTASTLLDAVQ 759
Query: 1058 E---DPESSKKLQQKRKKPS----LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTC 1110
P + + R++ + L H L+G +IL+V+DN +N+ VA L++ G V
Sbjct: 760 RALGHPSTQFRAAPLRREGASQAVLRH-LQGARILLVEDNRLNQEVALHFLRRAGLKVDV 818
Query: 1111 VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFG 1170
G A+++L ++A MD QMP MDG++AT +IR S F
Sbjct: 819 AAHGAEAIERLE-QGAYEAVLMDCQMPVMDGYEATRRIR---------------SKAQFA 862
Query: 1171 NVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
+PI+AMTA+ ++ E+ +K GM+D++SKP + LY + R+ G
Sbjct: 863 -----QLPIIAMTANALEGDRERSLKSGMNDHLSKPIDVNHLYQTLGRWIAPG 910
>gi|381157616|ref|ZP_09866850.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
gi|380881479|gb|EIC23569.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
Length = 1398
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 196/648 (30%), Positives = 314/648 (48%), Gaps = 121/648 (18%)
Query: 594 AINRIAQV---ENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
A N +A V E E+M K +AE A+ +KS FLA +SHEIRTPMN ++G + M T
Sbjct: 610 AANLVAIVLMREQREAELMLAKEQAETANQSKSAFLANMSHEIRTPMNAIMGFSHLCMQT 669
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
+L Q Y + H + + L+ LIND+LD +K+E+GRLE E +PF L +V++ V S+ +
Sbjct: 670 QLSEKQYGYLEKIHTASQSLLGLINDILDVSKVEAGRLELERIPFELDEVIERVASIIAI 729
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
+A QKG+E I +P +IGDP R Q++ NL+ N++KFT+ +G + + +
Sbjct: 730 RAEQKGLEFLIDTDLEIPPHLIGDPLRLGQVLLNLLSNAVKFTE-RGEVSLRI------- 781
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKL 830
+L +H + +L
Sbjct: 782 ------------ALQGREHDT------------------------------------AEL 793
Query: 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
V+D+G+G+ R+F PF QADSST+R YGG+G+GL IS+ LVE+MGG + F S+
Sbjct: 794 TFEVQDSGIGMSEADAARLFRPFTQADSSTTRKYGGSGLGLVISKRLVEMMGGALRFRSQ 853
Query: 891 PGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRL 950
PG GS F F+ ++ P + + P + R LR LV++D EV +LQ
Sbjct: 854 PGEGSVFYFSAELGLPDQ----PSARSFAPP-QDLRDLRVLVVNDHRRVLEVLTNYLQSF 908
Query: 951 EMAV-HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV--WDKEIGLVLHYMLKQQRRK 1007
V +A ++ + L+ + L+++D + WD GL L+
Sbjct: 909 NFRVTAIATGAEVTETVLAAARAGD---PFELLVVDTRLPEWD---GLDCARRLRAHPEL 962
Query: 1008 GG-LEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQ----- 1057
GG L+I LL +S +R + + D + LL KP + S ++G F
Sbjct: 963 GGTLKI--------LLVSSSGRLERLQPQRDLVDGLLAKPFQASGLFNAIMGIFDHLELI 1014
Query: 1058 --EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
+ P S + + ++G ++L+V+DN +N++VA L G V + G+
Sbjct: 1015 PGQRPWSVDDGASRAQ-------VQGARLLLVEDNPINQQVACELLAGAGIGVMVAENGQ 1067
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
A++ L FD MD+QMP MDG AT IR L
Sbjct: 1068 QALEILR-RETFDGVLMDMQMPVMDGVTATRAIR--------------------AQTALQ 1106
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
+P++AMTA+ + + E+C + GM+D+++KP + + L+ +A++ G
Sbjct: 1107 RLPVIAMTANAMASDIERCREAGMNDHIAKPIDPDVLFQVLAQWVKPG 1154
>gi|254411816|ref|ZP_05025592.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196181538|gb|EDX76526.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1478
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 194/612 (31%), Positives = 298/612 (48%), Gaps = 102/612 (16%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
K+QFLA +SHEIRTPMNGVLGM ++L+ T+L+ QLD+ +T SG+ L+ +IND+LD +
Sbjct: 529 KAQFLANMSHEIRTPMNGVLGMSELLLTTDLNPRQLDFVKTLQVSGEHLLGVINDILDFS 588
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
K+E+G + + +++ L++VL L S +A K +ELA+ V VP ++GD GR RQI
Sbjct: 589 KLEAGEMRLDVDELNINRSLEDVLDLCSPQAEAKDLELALLVDTDVPRRLMGDVGRLRQI 648
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
TNLV NSIKFT+ G + + V V +++ +DK
Sbjct: 649 CTNLVSNSIKFTE-SGEVVIRVS----VHQELEEQDK----------------------- 680
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
++L V DTG+GI E + ++F F Q DSST+
Sbjct: 681 --------------------------LQLRFAVRDTGIGINPEDKSKLFQAFSQVDSSTT 714
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE----GERNSLDPKWQQ 917
R YGGTG+GL+I + LVE+MGGEIG S+ G GSTF FT+TF + E N D +
Sbjct: 715 RKYGGTGLGLAICKQLVEMMGGEIGVESQLGVGSTFWFTITFGKVPVGTEENESDRIFSN 774
Query: 918 YVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLP 977
+G R L++DD+ I ++ +Y L+ M V A++ +A + + +
Sbjct: 775 LPISPESLQGKRVLIVDDRPINRQIVKYQLEARGMEVDEADNGIIALNAMQASAEAGKPY 834
Query: 978 QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE-LKS 1036
+AL+ + D G L ++ + ++ +L TS+ D + L
Sbjct: 835 DVALLDMKMPKID---GSTLGRLILAEPDWAKTKL--------VLMTSMHAGDSAQPLLK 883
Query: 1037 DGIVTLLTKPLRLSVLIGCFQ-----EDPESSKKLQQKRKKPS----LGHLLKGKQILVV 1087
G L KP++ S L+ Q E P + Q PS LK IL+V
Sbjct: 884 SGFADYLVKPVKESQLLESLQKILAAEIPATLFSTQSAIPDPSQPAPQSTCLK---ILLV 940
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+D +N ++ ++ G + G+ A+DK+ +++D MD QMP MDG+QA
Sbjct: 941 EDTPINLKLVRHQVQLLGHESESAENGQEALDKIA-KNDYDIVLMDCQMPVMDGYQAVRT 999
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
+R E H ++ MTA +Q E+C+ GMDDY+SKP
Sbjct: 1000 LREREGTDR-------------------HTIVIGMTAYAMQGDREKCLAAGMDDYLSKPV 1040
Query: 1208 EDEQLYTAVARF 1219
+ L + R+
Sbjct: 1041 MVKNLAPVLERW 1052
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+V+D +N ++ + ++ G + G A++KL +++D MD QMP MDG++
Sbjct: 1226 LLLVEDTPINLKLVQHQVRLLGHQWDSAENGEKALEKLAE-NDYDIVLMDCQMPVMDGYK 1284
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT +R E + H ++ MTA + ++C+ GMDDY+
Sbjct: 1285 ATQTLRQREGTNH-------------------HTIVIGMTAYAMPGDRDKCIAAGMDDYL 1325
Query: 1204 SKPFEDEQLYTAVARFFM 1221
SKP ++L + R+ +
Sbjct: 1326 SKPVMVKELKVMLQRWSL 1343
>gi|386826933|ref|ZP_10114040.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386427817|gb|EIJ41645.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 1636
Score = 268 bits (686), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 202/611 (33%), Positives = 301/611 (49%), Gaps = 118/611 (19%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+FLA +SHEIRTPMN V+GM +L +T L+ Q D+ +T S L+ LIND+LD +
Sbjct: 282 KSEFLANMSHEIRTPMNAVIGMAGLLRETHLNQQQRDFVETIRTSSDTLLCLINDILDFS 341
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS---DRVPEVVIGDPGRF 738
KI++G+LE E F L + +++ L L + +A +K +EL + RVPE + GD R
Sbjct: 342 KIDAGKLELEENLFDLRECVESALDLVAPRAAEKNLELTAFFDHEMQRVPEYLCGDVTRL 401
Query: 739 RQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTL 798
RQI+ NL+ N++KFT +KG + V +
Sbjct: 402 RQILVNLLTNAVKFT-EKGEVVVMI----------------------------------- 425
Query: 799 SGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858
S P+++ +I+L V+DTG+GIP + R+F F Q D+
Sbjct: 426 SAQPLLEE-------------------KQIELYFAVKDTGIGIPPDRINRLFQSFSQVDA 466
Query: 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQY 918
S +R YGG+G+GL+IS+ L ELM G I SE G GSTF FT+T GE ++ Q
Sbjct: 467 SMTRKYGGSGLGLAISKHLCELMKGRIWIDSELGKGSTFHFTITAQVGENPNI-----QN 521
Query: 919 VPDVS-EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLP 977
V DVS E G R L+IDD + + + Q+ M V A S + A + L+
Sbjct: 522 VSDVSVELEGKRLLIIDDNATNLRILKLQAQQWGMVVEEAFSGKEALARLAQPT------ 575
Query: 978 QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSD 1037
+ L+++D + + + G+ L Y +++ L LP I L TS+ D +
Sbjct: 576 KFDLLILDMQMPEMD-GITLAYEIRK------LYSIETLPIIML--TSLGRHHAD-ISPH 625
Query: 1038 GIVTLLTKPLR----LSVLIGCFQEDPESSKKL-------QQKRKKPSLGHLLKGKQILV 1086
LTKP++ L+V+ F S+ ++ Q KK L +IL+
Sbjct: 626 LFSAYLTKPVKAKHLLTVVKSIFNPKAVSADEVNHITVTDQNMAKKHPL-------RILL 678
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
+DN+ N++VA L + G G+ AV+ + +D MD+QMPEMDGF+AT
Sbjct: 679 AEDNLTNQKVAIHLLHRLGYSADIASNGKEAVEAVA-RQMYDVILMDVQMPEMDGFEATQ 737
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVP-ILAMTADVIQASNEQCMKCGMDDYVSK 1205
QIR + F H P I+AMTA +Q E+C+ GMDDY++K
Sbjct: 738 QIRE--------------RWQYFTT----HNPYIIAMTAHALQGYREKCLAAGMDDYITK 779
Query: 1206 PFEDEQLYTAV 1216
P E+L TA+
Sbjct: 780 PVRREELMTAL 790
Score = 45.4 bits (106), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+ILVVDD + + L++ G V G+ A++ L + D+ MPEMDGF
Sbjct: 1282 KILVVDDQPYDSLLVSAYLREEGYNVLVASTGQEALE-LVINQVPNLVLSDVMMPEMDGF 1340
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+ QI+ A ES P++ +TA + + ++ G D++
Sbjct: 1341 EVCRQIK----------ARHES----------ILTPVVLLTALEGRTERIKGIQAGADEF 1380
Query: 1203 VSKPFEDEQL 1212
+SKP E+L
Sbjct: 1381 ISKPINREEL 1390
>gi|408420706|ref|YP_006762120.1| two component system sensor histidine kinase, hybrid [Desulfobacula
toluolica Tol2]
gi|405107919|emb|CCK81416.1| two component system sensor histidine kinase, hybrid [Desulfobacula
toluolica Tol2]
Length = 1164
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 200/620 (32%), Positives = 301/620 (48%), Gaps = 108/620 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A A+ AKS+FLA +SHEIRTP+N V+G+ +L T L Q Y ++S L++LI
Sbjct: 416 ALASSNAKSKFLANMSHEIRTPLNAVIGLGDLLRRTALSEKQEQYLSKMNSSSHALLALI 475
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+G LE E +PF L++V++N+ +F KAN+K IE + + +P +IGD
Sbjct: 476 NDILDFSKIEAGHLELEAIPFSLYEVIENLTEMFGLKANEKEIEFLVAIEKGIPNALIGD 535
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P R QI+ NL GN++KF Q KG I + L + K D
Sbjct: 536 PTRLGQILINLTGNALKFIQ-KGEIVIKAGLE---------------------EEKED-- 571
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
G + +V+DTG GI IF F
Sbjct: 572 -------------------------------GSLVFGFSVKDTGPGIEPSRINSIFDSFT 600
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
Q D S +R YGGTG+GL+I++ LVE+MGG+I S+ G GS FSFTV F + LD
Sbjct: 601 QEDQSVTRKYGGTGLGLAITKQLVEIMGGDISVESKLGEGSKFSFTVCF---KSQPLDK- 656
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
Q + + RGL LV+DD E+ + +M V A+S + A L + +T
Sbjct: 657 -QLIINPPKDLRGLSVLVVDDNQAAREIISEIIVSFQMKVETASSGEQALFMLENGNNT- 714
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
L+L+D W K G+ +Q +R G+++ + LP I +++ E E
Sbjct: 715 ----YDLILLD---W-KMPGMNGIETARQIKR--GVKLDK-LPIICMISAYGREDLMQEA 763
Query: 1035 KSDGIVTLLTKPLRLSVLIGC-------------FQEDP-ESSKKLQQKRKKPSLGHLLK 1080
+ L KP+ S+L FQE+ + L +K + +K
Sbjct: 764 DRSFLDVFLHKPINPSLLFNSIMEIYGRKRQDENFQENSFQEGDFLGSAQKNTAAIPHIK 823
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
G IL+V+DN +N+ +A L + G V CV+ GR A+D+L FD MD+QMP MD
Sbjct: 824 G-NILLVEDNTINKEIALEWLTQAGLNVLCVENGREAIDQL-EARPFDLVLMDIQMPVMD 881
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G +AT +R S + F + +PI+AMTA + E+ ++ GM+
Sbjct: 882 GLEATRILR---------------SRKKFNS-----LPIIAMTAHALSGDREKGIEAGMN 921
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
DY++KP + L+ ++ +
Sbjct: 922 DYITKPIDPALLFKTLSIYL 941
>gi|345871554|ref|ZP_08823498.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343920212|gb|EGV30948.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1162
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 202/612 (33%), Positives = 308/612 (50%), Gaps = 97/612 (15%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A A AKS FLA +SHEIRTP+N V+G+ +++ TELD Q DY A + K L+S+I
Sbjct: 409 ARLASEAKSGFLANMSHEIRTPLNAVMGLTDLVLRTELDQRQRDYLSKARIAAKSLLSVI 468
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+GRLE E PF L +VL N+ +F+ A++K IEL + +VP +IGD
Sbjct: 469 NDILDFSKIEAGRLELESAPFSLDEVLANLTEMFAYGAHEKEIELIVSADAQVPRALIGD 528
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R QI+ NL N+IKFT D+G + VSV L D V E+++ +Q V
Sbjct: 529 STRIGQILINLTSNAIKFT-DRGEVMVSVDL-----VDPPPPDLVPEQTMLRIQ-----V 577
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
+T +G P DR + IF F
Sbjct: 578 RDTGAGIP-EDRLSA---------------------------------------IFESFS 597
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD + +R +GGTG+GL+I+R L LMGG++ S GSTF+ T+ P+
Sbjct: 598 QADQTITRRHGGTGLGLAIARDLSRLMGGDLSVASRLDEGSTFTATLVLGR------QPE 651
Query: 915 WQQYVPDVS-EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
QQ++P + RGL+ LV+DD + E+ L+ +M+ A S + A + +SD
Sbjct: 652 RQQHMPTTPLDLRGLKVLVVDDNATSREILVGQLESFQMSAQAAASGEEALALMSDPAHA 711
Query: 974 SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
LVL+D W K G ++ + +R + L++ + P + +++ E
Sbjct: 712 -----FDLVLMD---W-KMPG--MNGLETTRRLRADLKLDKT-PVVCMVSAYAREDLMQP 759
Query: 1034 LKSDGIVTLLTKPLRLSVL----IGCF--QEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
+ + L KP+ S L +G F Q+ + LQ+ + + G+++L+V
Sbjct: 760 AERSILDAFLNKPVNQSFLFDTIMGLFGHQDAAVTGAPLQRGVQTDTGLPDFTGRRVLLV 819
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+D +NR VA L G V V+ G AV + P +D MDLQMP MDG +AT +
Sbjct: 820 EDIEMNRLVAIEWLTSAGFEVKSVENGLQAVSE-ADPARYDVILMDLQMPVMDGLEATRR 878
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR ++ E G +PI+AMTA ++ E+C+ GM+DYV+KP
Sbjct: 879 IR--------------ANPEKAG------IPIIAMTAHALKGDLERCLNAGMNDYVAKPI 918
Query: 1208 EDEQLYTAVARF 1219
+ ++L+ A+AR+
Sbjct: 919 DPDRLFAALARW 930
>gi|223940459|ref|ZP_03632310.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
gi|223890862|gb|EEF57372.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
Length = 832
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 190/600 (31%), Positives = 304/600 (50%), Gaps = 85/600 (14%)
Query: 624 QFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKI 683
+FLA +SHEIRTPMNGV+ M +L++T L+ Q Y +T H+S + L+++IND+LD +KI
Sbjct: 156 EFLANMSHEIRTPMNGVIAMTGLLLETNLNNEQRSYVETIHSSSESLLTIINDILDFSKI 215
Query: 684 ESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIIT 743
ESG+LE E PF+L ++ L L ++KA +K ++LA + D +P V GD R RQ++
Sbjct: 216 ESGKLELEHRPFNLRMGVEEALDLLATKAAEKKLDLAYQMDDDIPSHVHGDVTRLRQVLV 275
Query: 744 NLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPV 803
NL+ N IKFT ++G +FV V + ++ S P
Sbjct: 276 NLLSNGIKFT-NEGEVFVHVKI------------------------------HSASPEPT 304
Query: 804 VDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRT 863
D D T R++L TV DTG+GI R+F F QAD+ST+R
Sbjct: 305 AD-----------DAT-------RLQLHFTVRDTGIGIHPTQIDRLFKSFSQADASTTRQ 346
Query: 864 YGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVS 923
YGGTG+GL+IS+ LVELMGG++ S GSTF F + F + P Q P ++
Sbjct: 347 YGGTGLGLAISKRLVELMGGKMWVESTLQRGSTFHFLIPFRPAVAAPIFP-LQGQQPQLA 405
Query: 924 EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVL 983
+ LR L++DD + + M A+S A +++ + L +
Sbjct: 406 D---LRLLIVDDNPTNRRILTLQTSKWGMIPRSASSGSQALDWMAKGEA------FDLAI 456
Query: 984 IDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLL 1043
+D + D + GL+L +++ L S+ +P + L + + TD S + L
Sbjct: 457 LDMQMPDMD-GLMLAKRIRE------LPGSQMMPLVLLTSMGL-RTDSPGFTSVAFASCL 508
Query: 1044 TKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
TKP++ + VL+ +++K + P+L L + +L+ DDN++N++VA
Sbjct: 509 TKPIKPAQLHEVLMRVVSGSKPAARKAAANKLDPALAARLPLR-VLLCDDNLINQKVALR 567
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
L++ G + G + L +D FMD+QMPEMDG QAT QIR + + +
Sbjct: 568 LLQQMGYKADVANNGLECLKALE-RQPYDLIFMDVQMPEMDGLQATQQIRRRQQDPSH-- 624
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ +F I+A+TA+ +Q ++C+ GMDDY++KP + + + R+
Sbjct: 625 -PAHFKSPIF---------IIAITANAMQGDRDKCIAAGMDDYLAKPVRTDDIRLIIERW 674
>gi|119962503|ref|YP_948930.1| signal transduction histidine kinase [Arthrobacter aurescens TC1]
gi|119949362|gb|ABM08273.1| putative signal transduction histidine kinase [Arthrobacter aurescens
TC1]
Length = 1153
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 204/610 (33%), Positives = 283/610 (46%), Gaps = 105/610 (17%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+FLAT+SHEIRTP+N V+G+ ++MDT L Q YAQ +G+ L++LIND+LD +
Sbjct: 478 KSEFLATMSHEIRTPLNAVIGLTSLMMDTPLSEGQRQYAQGVKGAGEVLLTLINDILDFS 537
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
K+E+G+++ + F ++++ V L A K +EL Y VP ++GD GR RQI
Sbjct: 538 KLEAGKVDLDINAFDPRELVEEVAGLVVEAAQGKDLELISYCHPDVPARLMGDAGRIRQI 597
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL N++KFT D +V+V+ VL N + H +K
Sbjct: 598 LLNLSSNAVKFTPD---------------GEVEVQVSVLAHDPN-LAHDPNKA------- 634
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
L V DTG+GI E R+F F QAD+ST+
Sbjct: 635 ---------------------------SLRFEVRDTGIGISAENHQRLFESFAQADASTT 667
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R YGGTG+GL+ISR L E+MGG+IG SEPG GS F F + L P
Sbjct: 668 RRYGGTGLGLAISRRLTEVMGGKIGLDSEPGVGSRFWFDLEL------PLGPAATDTESL 721
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA-VHVANSMQLACSYLSDTCSTSVLPQLA 980
+ G R LV+DD + V L M V VA++ Y + S+
Sbjct: 722 PATLAGRRVLVVDDNATNRLVLDTQLASWGMVPVSVADAASALDEYRAAASSSH---PYD 778
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV 1040
+ ++D + D + GL L +K + G P I LL TS + +R +L S GI
Sbjct: 779 IAVVDMCMPDTD-GLQLARNIKNESNGSG------GPGIILL-TSTMQVERSDLTSAGIR 830
Query: 1041 TLLTKPLRLSVLIGCF-----------QEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089
LTKP+R S L P + ++ P LG L LV +D
Sbjct: 831 EYLTKPVRSSELYNRLLRVLATKTTGAPSAPAINHPVETADPVPRLGKL------LVAED 884
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
N VN+ VA G + G V VD G AV + A MD MP MDGF AT IR
Sbjct: 885 NEVNQLVARGMANRLGYEVHIVDDGEQAVSAAL-SGTYAAVLMDCHMPVMDGFDATKAIR 943
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
+G S+ +PI+AMTA + E+C GMDDY+SKP +
Sbjct: 944 A---------RNGHSA----------RIPIIAMTAGALDEDRERCFAAGMDDYISKPVDL 984
Query: 1210 EQLYTAVARF 1219
+L +AR+
Sbjct: 985 AKLAEVLARW 994
>gi|433773155|ref|YP_007303622.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
gi|433665170|gb|AGB44246.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
Length = 764
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 192/641 (29%), Positives = 302/641 (47%), Gaps = 116/641 (18%)
Query: 588 GHIFHAAINR-IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQM 646
G + H AI R I + M+ + RAE A AKS+FLATVSHEIRTPMNG++GM ++
Sbjct: 222 GAVSHRAIARDITARKRAESSMITARERAEFASQAKSRFLATVSHEIRTPMNGIMGMARL 281
Query: 647 LMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLS 706
L DT L Q Y S L++LI D+LD +KIE+GR +PE P + ++ DN++
Sbjct: 282 LADTSLSPEQQTYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQPMSVREIADNIIE 341
Query: 707 LFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766
L +++A K I L +V VP+++ DPGR RQ++ NL+GN+IKFT D G + VSV
Sbjct: 342 LMAARAFAKNIGLGCHVEPDVPQLITADPGRVRQVLLNLIGNAIKFT-DSGGVLVSV--- 397
Query: 767 DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG 826
R++ + D++ + +T G D + +E F+ D T+T
Sbjct: 398 --ARARTETSDRICF-----------TIADTGPGLRDEDMERIFEEFEQADGTST----- 439
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
RT+GG G+GL+IS+ LV MGG I
Sbjct: 440 -----------------------------------RTHGGAGLGLAISKRLVAAMGGTIS 464
Query: 887 FVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH 946
S G GS F F + T ++ +P + ++ G RA+++ ++ A+
Sbjct: 465 VSSRLGQGSEFVFEIPAT----SATEPPQGR----LNALAGRRAVIVSKNTVEADAIART 516
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
++ A +A ++ A S+ +D C ++L+D + + + +LK+ R+
Sbjct: 517 IRSNGGAAGIATTVAQAASF-ADGCD--------VLLVDAAMEESD-----GRLLKRLRQ 562
Query: 1007 KGGLEISRNLPKIFLLATSISETDR---DELKSDGIVTLLTKPLRLSVLIGCF--QEDPE 1061
G + T I+ TDR E ++ G T L +P+R L+ P
Sbjct: 563 HGFSDCE--------AVTLIAPTDRGMLGEFRASGYATFLARPVRGGTLLRVLLSSHAPV 614
Query: 1062 SSKKLQQKRKKPSL---GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
++ +KR+ P+L G +G +L+ +DN +N +A L K G V V G+AAV
Sbjct: 615 LAQPQPEKRRAPALRASGERQQGLSVLIAEDNDINAMLARATLLKAGHRVKVVGNGKAAV 674
Query: 1119 DKLTPP---HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
+ +T H FD MDL MP MDG A IR E E + +
Sbjct: 675 EAVTGAGHKHRFDVVLMDLHMPVMDGLDAIAAIRRHEEEAS-----------------VP 717
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
VPI+ ++AD + + + G +V+KP + + L +AV
Sbjct: 718 PVPIMVLSADSQEKTRHAVLAHGASGFVTKPLDPDALVSAV 758
>gi|345889627|ref|ZP_08840624.1| hypothetical protein HMPREF0178_03398 [Bilophila sp. 4_1_30]
gi|345039416|gb|EGW43747.1| hypothetical protein HMPREF0178_03398 [Bilophila sp. 4_1_30]
Length = 1084
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 205/621 (33%), Positives = 286/621 (46%), Gaps = 114/621 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A AKS FLA +SHEIRTPMNG++GM + + TEL + Q DY S L+
Sbjct: 557 KEEAETASRAKSDFLANMSHEIRTPMNGIIGMSHLTLQTELTSRQRDYLTQISTSANTLL 616
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++ND+LD +KIE+G+LE E F L VL+ V S+ A +KG+EL +S VP V+
Sbjct: 617 RIVNDILDFSKIEAGKLEMEHADFQLEQVLEEVASIADLSAAEKGLELLSRISPDVPPVL 676
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GD R QI+ NLVGN+IKFTQ GH+ V S+ +H+
Sbjct: 677 EGDALRLSQILLNLVGNAIKFTQ-SGHVLV---------------------SVTQERHEG 714
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
K +L +V DTG+G+ E +F
Sbjct: 715 SKT----------------------------------RLRFSVSDTGIGMTSEQIGNLFE 740
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE---GER 908
F QAD+ST+R YGGTG+GL+I + LV LMGGEI S PG GS F FT F ER
Sbjct: 741 SFTQADNSTTRRYGGTGLGLAICKRLVNLMGGEIHVRSTPGHGSDFVFTAEFGTVAVPER 800
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
L P G R L++DD + + L+ ++ A S + A
Sbjct: 801 RLLLPS--------HPLHGERILIVDDNELSRNILSGMLREFQLDPVSAASGEEAVRLCH 852
Query: 969 DTCSTSVLPQLALV-LIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
D ++ALV + + K+ L L +Q P I +AT
Sbjct: 853 DAAREGKPYRVALVDWLMPGMSGKDTAQALCAALPKQ------------PVILFMATI-- 898
Query: 1028 ETDRDELKS------DGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL--L 1079
DR ++ + D + L+TKP+ S LI E + + R +PS L
Sbjct: 899 -HDRPDVLAHIREGKDIPMRLITKPVTPSSLISALLEAEQPQDR--PDRAEPSTAPFPEL 955
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G ++L+ +DN +NR+VA L+ G V G AV+KL +DA MD+QMP M
Sbjct: 956 MGARVLLAEDNAINRQVANEILQSSGVSVEPAGDGLEAVEKLW-EGGYDAVLMDIQMPGM 1014
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG +AT +R F N +PI+AMTA + E+ + GM
Sbjct: 1015 DGLKATRILREYAR---------------FDN-----LPIIAMTAHAMNGDREKSLSVGM 1054
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
DY++KP E L + +AR+
Sbjct: 1055 QDYIAKPIEPSVLLSTLARWI 1075
>gi|162456058|ref|YP_001618425.1| two-component hybrid histidine kinase [Sorangium cellulosum So ce56]
gi|161166640|emb|CAN97945.1| two-component hybrid histidine kinase [Sorangium cellulosum So ce56]
Length = 919
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 190/614 (30%), Positives = 307/614 (50%), Gaps = 83/614 (13%)
Query: 624 QFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKI 683
+FLA+VSHEIRTPMNG++GM + + TEL Q +Y + S L+S+INDVLD +KI
Sbjct: 183 EFLASVSHEIRTPMNGIIGMTSLALQTELTQEQREYLEMVKISADALLSIINDVLDFSKI 242
Query: 684 ESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIIT 743
E+G+LE E V F +++ + + + +A++K +ELA V VPE ++GDP R RQ++
Sbjct: 243 EAGKLEIEPVVFDPSEIIGDAVKTLALRAHEKRLELAYDVGPDVPEALVGDPLRLRQVLV 302
Query: 744 NLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPV 803
NLV N++KFT D G + V R++VD + + + S + G P
Sbjct: 303 NLVSNAVKFT-DAGEVVV--------RAEVDSRAPLTPEEEASADSQ---------GTP- 343
Query: 804 VDRWKSWENFKMLDNTNTMEQLG-RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
+ E LG + L V+V DTG+GI E Q +F F QAD ST+R
Sbjct: 344 --------------SLYAGEVLGDAVVLRVSVIDTGIGIAPEKQRVVFDAFAQADGSTTR 389
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922
YGGTG+GL+I LVE+MGG+I SE G GSTF FT+ E + + + +P
Sbjct: 390 KYGGTGLGLTICARLVEMMGGKIWIESEAGKGSTFHFTLQLRALEGAARSRRLE--IP-- 445
Query: 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLP----- 977
+ G + L+ DD + + ++ M +S A + LS+ LP
Sbjct: 446 KDLLGTKVLIADDNATARRILADTIEGWGMKAVPVDSGAAAIAALSEDSGVWALPWGKPG 505
Query: 978 --------QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
L ++D + + V+ + K++ KG + + LL+++ ++
Sbjct: 506 GNAVGPSSSFGLAIVDARMPKVDGFAVVEHCRKREILKGRV--------LMLLSSTSAQA 557
Query: 1030 DRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQIL 1085
D + G+ ++TKP++ S + F +S + R+ + G +G ++L
Sbjct: 558 DVARCRDLGVFAMVTKPVKTSHLQEAVFHAFGVPTRTSLRSADPRRA-APGPRARGLRVL 616
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
V +DN +N+++ L++ G V V+ GR AV+K+ +D +D++MPEMDG QA
Sbjct: 617 VAEDNAINQKLMRRWLERQGHHVHIVENGRLAVEKIA-GGQYDVALLDVEMPEMDGLQAA 675
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
+R E H+P++ +TA ++ E+C++ G D YVSK
Sbjct: 676 RVVRARERREG------------------GHMPLIVVTAYAMKGDRERCLRAGFDGYVSK 717
Query: 1206 PFEDEQLYTAVARF 1219
P + E+LY + R
Sbjct: 718 PVQVEELYDMIDRL 731
>gi|145219188|ref|YP_001129897.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM
265]
gi|145205352|gb|ABP36395.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM
265]
Length = 869
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 201/626 (32%), Positives = 300/626 (47%), Gaps = 120/626 (19%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
++ A A A+VAKSQFLA +SHEIRTPMNGV+GM +L++T LD Q YAQT S +
Sbjct: 212 QMAAEARDANVAKSQFLANMSHEIRTPMNGVIGMADLLLETALDTEQRKYAQTIIRSARS 271
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+ +IND+LD +KIE+ R E E F L D+L + + +A++ +EL+++V +P
Sbjct: 272 LLKIINDILDFSKIEANRFELEHSDFELCDLLMEISGILGIEAHESRLELSVHVVPEIPT 331
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
+IGD GR RQI+ NL+GN++KFT G + V + L Q
Sbjct: 332 SLIGDSGRIRQILVNLLGNAVKFTPVGGEVGVKLKL----------------------QQ 369
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
++D+ F V+ +V DTGVGIP E I
Sbjct: 370 ETDR-------FVVIQ--------------------------FSVFDTGVGIPPEQVDSI 396
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
F PF QAD ST+R YGGTG+GLSIS L MGG I S PG GS FSF +
Sbjct: 397 FEPFTQADGSTARKYGGTGLGLSISNHLATRMGGRINVESHPGEGSVFSFNIV------- 449
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL---AC-- 964
L+ + Q+ P R L ++ I A + +A + +++ L C
Sbjct: 450 -LEKQSVQHAP--------RTLALEHDVILACWSDV------LAGSLKDTLGLWGCGCRR 494
Query: 965 ----SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
S + D S ++ +D + E ++ Y ++ + GL I I
Sbjct: 495 VEGYSEVPDILRQSGSGGRFILFLDMRCFGLECEGLIEY-IEALKEFTGLRI------IL 547
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLL- 1079
L++ E + E+ G L KP++ L + E + + +P LL
Sbjct: 548 LVSVGNREEEFSEI-CGGNCLFLEKPVQRDELFLMLSDTIERMPPARCESAEPQ--SLLP 604
Query: 1080 -----KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
G +L+V+D+ VN++VA L+K G GR A++ L +D FMD
Sbjct: 605 ATAPTAGLVVLIVEDSPVNQQVAVAMLRKLGCEPDVASGGREALE-LMRTTAYDMVFMDC 663
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMPEMDG++AT +IR SG S+ +VP++AMTA+V++ E+C
Sbjct: 664 QMPEMDGYEATGRIRS---------GSGMKSSR--------NVPVVAMTANVMKGDRERC 706
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ GMDDY++KP + ++ +F
Sbjct: 707 IASGMDDYIAKPLQKSDFRRVLSHYF 732
>gi|34496645|ref|NP_900860.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
12472]
gi|34330304|gb|AAQ58865.2| probable sensor/response regulator hybrid [Chromobacterium violaceum
ATCC 12472]
Length = 1105
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 205/622 (32%), Positives = 294/622 (47%), Gaps = 107/622 (17%)
Query: 595 INRIAQVENDYHEMM-ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 653
INR +++D + E K AEAA AK+ FL+ +SHEIRTPMN VLG+ +L L
Sbjct: 366 INRDITIQHDIETALRESKENAEAASRAKANFLSNMSHEIRTPMNAVLGLAYLLEKHGLP 425
Query: 654 AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKAN 713
A LD +G+ L ++IND+LD +KIE+G LE E F L DVLDN+ ++ S+
Sbjct: 426 AEALDLVHKIRVAGRSLQAIINDILDFSKIEAGNLEIEQASFRLADVLDNLSTIMSASVG 485
Query: 714 QKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773
+ IEL I + + + GD R Q++ NL N+IKFT+ GH V
Sbjct: 486 NRDIELIIAPPPQDIDYLRGDALRLEQVLINLTSNAIKFTE-HGH--------------V 530
Query: 774 DVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVT 833
V + LE S + V +L
Sbjct: 531 KVSIQPLEASPSQV-----------------------------------------RLRFA 549
Query: 834 VEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGT 893
VEDTG+GIP Q +F PF QAD+ST+R +GGTG+GL+IS+ LV LMGGEIG SEPG
Sbjct: 550 VEDTGIGIPKPKQRELFRPFTQADASTTRRFGGTGLGLAISQRLVALMGGEIGLYSEPGQ 609
Query: 894 GSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
GS F FT+ F P+ Q E L L+ DD I E L
Sbjct: 610 GSAFWFTLRF---------PREQGIRLSSPEMADLNVLIADDNPIARETLGVTASELGWK 660
Query: 954 VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
V S +LA + + +V++D + D + GL ++Q R
Sbjct: 661 VRSVESGRLAVEKVMAMLDGD--QAVDVVVLDWKMPDMD-GLAAAQAIRQACR------G 711
Query: 1014 RNLPKIFLLATSIS-ETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK 1072
+ +P I L+AT+ S E + E ++ + +L KP+ S L ++ L+ +
Sbjct: 712 KRMP-IILMATAYSREVLQAEPAAELVTEVLNKPVTPSGLYNAV------ARALRPQTAP 764
Query: 1073 PSL---GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT-PPHNFD 1128
P G+ L+G ++LVVDD+ +NR VA+ + GA V + G+ A+D L D
Sbjct: 765 PPQIQHGNRLQGLRLLVVDDSDINREVAQRIFEDEGASVALANDGKEALDWLGLHGGEVD 824
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD+QMP MDG++AT IR L H+P++A+TA
Sbjct: 825 IVLMDVQMPVMDGYEATRAIR--------------------ATPALAHLPVVALTAGAFL 864
Query: 1189 ASNEQCMKCGMDDYVSKPFEDE 1210
A + + GM DY++KPF+ E
Sbjct: 865 AQQDAAREAGMSDYIAKPFDVE 886
>gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella
sediminis HAW-EB3]
gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella
sediminis HAW-EB3]
Length = 2213
Score = 267 bits (683), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 197/624 (31%), Positives = 307/624 (49%), Gaps = 108/624 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+M K AE A AKS FLA +SHEIRTPMN ++GM + + T LD Q DY +
Sbjct: 1466 EELMRAKRVAENATRAKSDFLANMSHEIRTPMNAIIGMSHLALQTGLDRKQRDYINKIQS 1525
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
+ + L++LIND+LD +K+E+G++E E PF+L+D LD + L + K +K +EL I
Sbjct: 1526 ASESLLALINDILDFSKVEAGKMEIERKPFNLNDTLDKLAQLITVKTREKKLELLIDTHK 1585
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VP +IGD R QI+ NL N++KFT+ KG + VS+ KV V D+
Sbjct: 1586 DVPCGLIGDSLRLGQILINLTNNAVKFTE-KGEVVVSIE-------KVCVDDE------- 1630
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
++ L TV+DTG+G+ E
Sbjct: 1631 -----------------------------------------QVTLKFTVKDTGIGMTKEQ 1649
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
++F F QAD+ST+R YGGTG+GL+IS+ L ELMGG I S G GS+F FT F
Sbjct: 1650 MGKLFQSFSQADASTTRKYGGTGLGLTISKKLTELMGGAISVESTFGKGSSFVFTANF-- 1707
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
G + + Q PD+ R L L++DD + ++ R + + L V A+S + A
Sbjct: 1708 GLSQAAEVVSQLPKPDL---RHLPILIVDDSPVARQILRQNGEALTFVVDEASSGEEAIE 1764
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
L D +V ID + + G+ + +K + E + P I +
Sbjct: 1765 KLHDYDQLGT--PFKVVFIDWKMPGMD-GVETCHRIKSE------ENIESPPNIVM---- 1811
Query: 1026 ISETDRDEL--KSDG--IVTLLTKPLRLSVLIGC--FQEDPESSKKLQQKRKKPSLG--- 1076
++ DR EL + +G + +LTKP+ S ++ E +K+ +Q LG
Sbjct: 1812 VTAYDRHELIHEMEGMEVSGVLTKPVTQSSMLDATMVAMGYEEAKRDEQAY---DLGLDA 1868
Query: 1077 -HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
++G +L+V+DN +N++VA L+ G +VT G+ A +++ FD MD+Q
Sbjct: 1869 AKAIRGTHVLLVEDNDINQQVATELLEMAGLVVTTASDGQEACERV-KTELFDVILMDIQ 1927
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP MDG+ AT IR G +P++AMTA+ + E+C+
Sbjct: 1928 MPVMDGYTATRHIRKFS--------------------GYEELPVIAMTANAMDGDREKCL 1967
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARF 1219
GM+D+++KP + ++ A+ ++
Sbjct: 1968 DAGMNDHIAKPIDPASMFAALVKW 1991
>gi|375149632|ref|YP_005012073.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
gi|361063678|gb|AEW02670.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
Length = 1329
Score = 267 bits (683), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 195/632 (30%), Positives = 319/632 (50%), Gaps = 102/632 (16%)
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
AAI R Q+E E+++ K AE+A+ AKS+F+A +SHE+RTPMNG++G +++ T L
Sbjct: 789 AAIER-KQME---QELVQAKDMAESANQAKSEFMANMSHELRTPMNGIIGFTDLVLTTNL 844
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
+Q DY + S L+ +IND+LD +K+E+G+L+ + F + ++++ + + S KA
Sbjct: 845 QHSQRDYLENVKKSAYGLLDIINDILDFSKLEAGKLQIDNTSFRIDELVEEAIDILSVKA 904
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+K +E+ ++ +P V GDP R RQ+ NL+GN+IKFTQ KG IFVS+ A ++
Sbjct: 905 FEKRLEMVCHIDPLLPSRVSGDPVRIRQVFVNLLGNAIKFTQ-KGEIFVSLKKAGNMY-- 961
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
VKD G +D + +
Sbjct: 962 --VKD----------------------GKKFID------------------------IDL 973
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
+V DTG+GIP E V+IF F QADSST+R YGGTG+GL+IS+ L ELM G + SE
Sbjct: 974 SVRDTGIGIPKEKLVKIFDSFTQADSSTTRKYGGTGLGLTISKSLAELMDGSLQVESETN 1033
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQ-QYVPDVSEFRGLRALVIDDKS----IRAEVTRYHL 947
GSTF+ + E +++P+ Y P ++ + LV+DD + + E+ RY
Sbjct: 1034 RGSTFTLKLPL---EIVNIEPQITGAYRPPLT-----KVLVVDDNASNRWLMQEIFRY-- 1083
Query: 948 QRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007
+A A++ + A + L+ S L L++ D + + + G+ L +++ RR
Sbjct: 1084 --FSIACETAHNGREALAILNRIHQNS--EPLDLIITDHHMPEMD-GMQL---VQEMRRS 1135
Query: 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQ 1067
P I +L++ + + + GI L+KP++L L + K+
Sbjct: 1136 SQ---GYTPPVIMMLSSLEKNMFQRQAEKLGIHGFLSKPVKLYELYATLSAMFTTGKQQP 1192
Query: 1068 QKRKK-PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN 1126
+K P + + I+VV+D +N + L K G V G+ A++ L +
Sbjct: 1193 EKISTIPVIEKITDAATIMVVEDEPINMLLITEVLGKMGFAVIKATNGKQALE-LLQQQD 1251
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
FMD+ MPEMDGF T IR L + +P++A+TAD
Sbjct: 1252 PQLIFMDVNMPEMDGFSTTRLIRQLPQPYS-------------------LIPVIALTADA 1292
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+Q E+C++ GM+DY+SKPF+ E++ + + +
Sbjct: 1293 MQGDKEKCIEAGMNDYISKPFKLEEIESVLKK 1324
Score = 45.1 bits (105), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 25/146 (17%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN----FDACFMDLQMPE 1138
++LVVDDN NR + + + GR A+ L H D D MPE
Sbjct: 1063 KVLVVDDNASNRWLMQEIFRYFSIACETAHNGREALAILNRIHQNSEPLDLIITDHHMPE 1122
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS-NEQCMKC 1197
MDG Q ++R S + + P++ M + + + Q K
Sbjct: 1123 MDGMQLVQEMRR----------SSQG----------YTPPVIMMLSSLEKNMFQRQAEKL 1162
Query: 1198 GMDDYVSKPFEDEQLYTAVARFFMSG 1223
G+ ++SKP + +LY ++ F +G
Sbjct: 1163 GIHGFLSKPVKLYELYATLSAMFTTG 1188
>gi|56460833|ref|YP_156114.1| hybrid sensor histidine kinase [Idiomarina loihiensis L2TR]
gi|56179843|gb|AAV82565.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
[Idiomarina loihiensis L2TR]
Length = 866
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 196/631 (31%), Positives = 304/631 (48%), Gaps = 98/631 (15%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
I+ +++ EM + K AE A+ +K +FLA +SHEIRTP+N ++GM + + TEL Q
Sbjct: 184 ISGIKSVAEEMEKAKETAERANQSKGEFLANMSHEIRTPINAIVGMANLCLKTELTQKQK 243
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
Y + +S + L+ +IND+LD +KI++G+L E +PF L DVL ++ +F+ +A K +
Sbjct: 244 RYIKVIDSSSQALLGVINDILDFSKIDAGKLTVERIPFDLQDVLTSLADMFAYRAYDKDL 303
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
E I + +P +IGDP R Q++ NL+ N+IKFT+D G I V+V+L D R D
Sbjct: 304 EFIINLPANIPTRLIGDPLRLNQVLVNLISNAIKFTED-GEINVAVNLLDSSR------D 356
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
VL L ++V DT
Sbjct: 357 NVL-------------------------------------------------LRISVTDT 367
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+G+ E + +F F QAD+ST+R YGGTG+GL+ISR L+ LMGG+IG S G GSTF
Sbjct: 368 GIGMDEEQRANLFKAFTQADTSTTRKYGGTGLGLAISRRLILLMGGDIGVTSAAGQGSTF 427
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
V + D QY+ + + +G+R L IDD E+ L+ ++ V V
Sbjct: 428 YIEVELP--LQTEQDNSHHQYL--LQKLKGVRILAIDDNLSTREMLYEMLRSYQVDVKVC 483
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ + A + + Q LVL+D W L + K R E R P
Sbjct: 484 RTAEQALQVFQLSVEDNNPYQ--LVLVD---WRLPGMDGLEFCQKITERYA--EDIR--P 534
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL-----IGCFQEDPESSKKLQQKRKK 1072
K+ L +E ++ K G+ +++KP S L FQ + +
Sbjct: 535 KMTLATGYYAEELSEKAKQAGVNDIISKPFTASTLGRSLTSTLFQRELSDADDADSGDGI 594
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
P +L+ ILVV+DN +N++VA L H V V+ G+ AV+ + N+ M
Sbjct: 595 PE--SILRAP-ILVVEDNEINQQVAREILSSHKFKVDIVENGQLAVEAVH-NKNYSLVLM 650
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP MDG +A IR + +PILAMTA+ + E
Sbjct: 651 DIQMPVMDGLKAAQTIR--------------------ADFNYQQLPILAMTANAMSGDEE 690
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
+ + GM +++KP +++QL A+ ++ + G
Sbjct: 691 RSLAAGMQGHIAKPIDEQQLIKAIIKWAVPG 721
>gi|428215971|ref|YP_007089115.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004352|gb|AFY85195.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1259
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 201/627 (32%), Positives = 313/627 (49%), Gaps = 94/627 (14%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
+ ++K A AA+ AKS+FLA++SHEIRTPMNGVLGM +L+ TEL+ Q YAQT +S
Sbjct: 551 LAQMKQAAVAANRAKSEFLASMSHEIRTPMNGVLGMTGLLLATELNPQQKHYAQTIFSSA 610
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+++IND+LD +K+E+ + + F L + +++V+ L + A +KG++L I + V
Sbjct: 611 EHLLTVINDILDFSKLEAREMHLNPINFELDECIESVVDLMVAPAQEKGLDLGICIDRNV 670
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV-HLADDVRSKVDVKDKVLEKSLNS 786
P + GDP R RQI+ NLV N+IKFT + G + ++V +++D SK D S+
Sbjct: 671 PRHLFGDPARLRQILLNLVNNAIKFT-EVGEVSIAVCAVSEDATSKAD--------SVPP 721
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q PV R+ V DTG+GI + Q
Sbjct: 722 AQRN-----------PVTLRF-------------------------AVTDTGIGILPQNQ 745
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
++F F Q DSS++R YGGTG+GL+IS+ LVELM G+IG SE GSTF FTVT
Sbjct: 746 TKLFQSFSQVDSSSTRQYGGTGLGLAISKQLVELMEGKIGVESELNQGSTFWFTVTLPVQ 805
Query: 907 ERNSLDPKWQQYVPDVS-EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
+ +P ++ P + E L+ LV D+ ++ + ++ R + V Q A S
Sbjct: 806 Q----NPTEKENSPGTTLEMESLKLLVADESAMHRQSVQHFADRWGITVDQVTDPQNALS 861
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
L + P AL L ++ + E +L + ++ L +R + +
Sbjct: 862 ALRAAAAEGT-PYHAL-LASVNLLEGEGSTLLQAL----NQEPNLATTRTIALAQFNQRA 915
Query: 1026 ISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK--- 1082
I+E L + + KPLR S + Q+ E L R + S G G
Sbjct: 916 IAEA----LAPHWVSAYIIKPLRGSQFVASLQQVLEPKVAL-SDRPRGSQGEPFSGSAFS 970
Query: 1083 ---------QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
+IL+ +D+ +N++V L G CV+ G A+D+L ++D FMD
Sbjct: 971 LAPPPVCPLKILIAEDHEINQQVIVFQLNTLGYHADCVNNGLEALDRLA-CEDYDLVFMD 1029
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
QMP+ DG++ T ++R E GN H ++A+TA + + ++
Sbjct: 1030 CQMPQKDGYEVTRELRQSE-----------------GN--RRHTIVIALTAHALNSDRQK 1070
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARFF 1220
C++ GMDDY+SKP EQL A+ R+
Sbjct: 1071 CLEAGMDDYLSKPVLLEQLQAALDRWI 1097
>gi|395007235|ref|ZP_10391000.1| PAS domain S-box [Acidovorax sp. CF316]
gi|394314783|gb|EJE51647.1| PAS domain S-box [Acidovorax sp. CF316]
Length = 1622
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 200/628 (31%), Positives = 300/628 (47%), Gaps = 106/628 (16%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+ E D EL AE + KS FLA +SHEIRTPMN ++GM + + + L+ Q DY
Sbjct: 856 RAEEDLRRAKEL---AEESTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLNTRQHDY 912
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
+G+ L+ +IND+LD +KIE+G+L E PF L +L++V + KA KG+EL
Sbjct: 913 VSKIQQAGQHLLGVINDILDFSKIEAGKLTVEKQPFVLDRMLESVTDVVGYKAGAKGLEL 972
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
V+ VP ++GD R QI+ N N+IKFT D+G I ++V ++
Sbjct: 973 VCDVAANVPPNLLGDSLRLGQILINFANNAIKFT-DQGEISIAV--------------RL 1017
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
LE+S R+ L V DTG+
Sbjct: 1018 LEESEK-----------------------------------------RVSLRFEVRDTGI 1036
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
G+ E R+F F QAD+ST+R YGGTG+GL+I + L ELMGGE+G +SE G GSTF
Sbjct: 1037 GLTAEQMGRLFESFQQADTSTTRRYGGTGLGLAICKSLAELMGGEVGVISEFGNGSTFWV 1096
Query: 900 TVTFTEG--ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
++ G R L P PD+ G R LV+DD A V LQ + V A
Sbjct: 1097 SLPLERGAPARVVLPP------PDLV---GRRVLVVDDNHTAATVLSDMLQAMGFEVEQA 1147
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
S A L + + + L+L+D W G+ + R G ++ P
Sbjct: 1148 YSGLQALEILREAMAKNRF--FGLLLLD---WHMP-GMDGVELAGHIRSLGMPQV----P 1197
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP---- 1073
++ ++ E ++ GI T+L KP+ S+L+ + E + Q++ P
Sbjct: 1198 QMLMVTAYGREDVMRAARAQGIETVLIKPVNASLLLETLMQPLEHALPALQRQYVPPPVA 1257
Query: 1074 -SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
L ++G ++L+V+DN +N+ VA L+ G V G+ A+ +L N+D M
Sbjct: 1258 DELPLAIRGARVLLVEDNELNQMVAVELLRDAGFDVDVAGNGQVAIQRLH-EDNYDLVLM 1316
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP MDG AT RHL + +PI+AMTA+ + A +
Sbjct: 1317 DMQMPVMDGETAT---RHLRADPR-----------------FARLPIVAMTANAMDADRQ 1356
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+C GM+D+V+KP + L+ A+AR+
Sbjct: 1357 RCFDAGMNDHVAKPIDPAALWKALARWI 1384
>gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
Length = 1727
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 211/687 (30%), Positives = 327/687 (47%), Gaps = 121/687 (17%)
Query: 581 VVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGV 640
V +TL + + Q+ + + E + AE A AKS+FLAT+SHEIRTPMN V
Sbjct: 946 VGLTLFQAKLLEFEVKSRQQLADKNKALEEARLAAEIASRAKSEFLATMSHEIRTPMNAV 1005
Query: 641 LGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700
+GM +L+D L+ Q D+ +T SG L+++IND+LD +KIESG+LE E PF L
Sbjct: 1006 IGMTGLLLDMNLNPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEHQPFKLRTC 1065
Query: 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIF 760
++ L L S++A++KG+ELA V PEV++GD R RQ++ NL+ N++KFT ++G +
Sbjct: 1066 IEESLDLLSARASEKGLELAYIVDPNTPEVMVGDVTRLRQVLVNLLSNAVKFT-NQGEVI 1124
Query: 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTN 820
VS V +++ S S+ +K + S P +
Sbjct: 1125 VS------------VTSSLIQDSAQSLISSEEKNESQPSISPPI---------------- 1156
Query: 821 TMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVEL 880
++ V+DTG+GIP + R+F F Q D+ST+R YGGTG+GL+IS+ L E+
Sbjct: 1157 -------YEVQFAVKDTGIGIPPDRMHRLFKAFSQVDASTTRQYGGTGLGLAISQRLSEM 1209
Query: 881 MGGEIGFVS----------------------EPG--------TGSTFSFTVTFTEGERNS 910
MGG++ VS P TGS F FT+ + E +
Sbjct: 1210 MGGKMWVVSWVKPLEESSNSQSLISSITGNPPPSFDIPRLDITGSIFYFTINSSAIETSL 1269
Query: 911 LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDT 970
D Q F G + L++++ I V ++ M VA + A + +
Sbjct: 1270 SDEFADQL------FTGKQILIVENHGINQTVITRQVKAWGMKPLVAKTGIDALKCIQEN 1323
Query: 971 CSTSVLPQLALVLIDKDVWD-KEIGLVLHYMLKQQRRKGGLEISRNLPK-------IFLL 1022
P + LV+I ++ D EI L L ++ ++SRN P +F
Sbjct: 1324 ------PNIDLVIIGINLPDIDEIELARKIRLLEK------DLSRNHPDRQPVHLVLFNY 1371
Query: 1023 ATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDP----ESSKKLQQKRK--K 1072
A++ + R E + + KPL+ S L+ F + SS KL +
Sbjct: 1372 ASNTNIVKRIERTNINCAGFVNKPLKQSQFYNTLVQIFAGNEIIEHSSSLKLTDESGPLN 1431
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
P H +IL+ +DN+ N++VA L++ G G +D L +D M
Sbjct: 1432 PPQNH--AALRILLAEDNVTNQKVATKLLQRLGYRADIAGNGVEVLDALK-RQPYDVVLM 1488
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP-ILAMTADVIQASN 1191
D+QMP+MDG +A+ R + E E G+ G P I+AMTA+ ++
Sbjct: 1489 DVQMPQMDGLEAS---RRICKEYGE------------GSDGRQKKPWIIAMTANAMRGDR 1533
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
E C++ GMDDYV+KP E+L A+A+
Sbjct: 1534 EMCLEAGMDDYVTKPVRREELAQALAK 1560
Score = 44.3 bits (103), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
L GKQIL+V+++ +N+ V +K G G A+ + N D + + +
Sbjct: 1276 QLFTGKQILIVENHGINQTVITRQVKAWGMKPLVAKTGIDALKCIQENPNIDLVIIGINL 1335
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P++D + +IR LE +++ + + N A ++++ +
Sbjct: 1336 PDIDEIELARKIRLLEKDLSRNHPDRQPVHLVLFN--------YASNTNIVKRIERTNIN 1387
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
C +V+KP + Q Y + + F
Sbjct: 1388 CA--GFVNKPLKQSQFYNTLVQIF 1409
>gi|390949064|ref|YP_006412823.1| signal transduction histidine kinase [Thiocystis violascens DSM 198]
gi|390425633|gb|AFL72698.1| signal transduction histidine kinase [Thiocystis violascens DSM 198]
Length = 907
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 204/619 (32%), Positives = 296/619 (47%), Gaps = 116/619 (18%)
Query: 610 ELKA---RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+A RAE A AKS F+AT+SHEIRTPMNG++GM ++ +DTEL Q D S
Sbjct: 366 ELQASVLRAEDASRAKSDFMATMSHEIRTPMNGIIGMTELTLDTELTDEQRDCLNIVRMS 425
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+++IND+LD +KIE+G+L E + F LH +++ V+ + KA++K +EL + +
Sbjct: 426 ADGLLTIINDILDFSKIEAGKLNVESIDFDLHRLINEVMKTLAVKADEKHLELLCEIDSK 485
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP V GDPGR RQI+TNL+ N+IKFT+ G + + V VL+++
Sbjct: 486 VPRAVFGDPGRLRQILTNLLNNAIKFTE-TGEVALRV---------------VLQET--- 526
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
VVDR + L + DTG+GIP E Q
Sbjct: 527 ----------------VVDR---------------------LNLHFALRDTGIGIPPEHQ 549
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
RIF F Q D+ST+R +GGTG+GL+ISR L ELMGG I S PG GSTF +
Sbjct: 550 ARIFEAFSQQDTSTTRRFGGTGLGLTISRRLAELMGGRIWVDSRPGEGSTFHVVLWLGLS 609
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
R +L P Q + R R L++DD + V + + EM + A + A
Sbjct: 610 TREALSPPPQ-------DLRDKRVLLVDDNATNRRVLGKLVVQWEMRLTEAADGREALQV 662
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
L ST ++LID + + G L LKQ R R+L I L + S+
Sbjct: 663 LEANASTP----FDVLLIDYHMPRMD-GFELAAALKQDAR------FRDLKLIMLSSASV 711
Query: 1027 SETDRDELKSDGIVTLLTKPL-------RLSVLIGCFQEDPESSKKLQQKRKKPSLGHLL 1079
+ GI LTKP+ + L+G P+ + + + HLL
Sbjct: 712 RGLGM-RCRELGIDAFLTKPVARHELLKAIHALLGRTDRQPDPAPLITR--------HLL 762
Query: 1080 K------GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
+ +IL+ +DN VN+++ L K G T G+ AVD + FD MD
Sbjct: 763 REGDGPTALKILLAEDNAVNQKLMLMVLSKWGHEATLAQNGQEAVD-WSARAPFDLILMD 821
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP M G +AT +IR E A+ + + +PI A+TA +
Sbjct: 822 MQMPVMGGLEATRRIRDRE-------ATAPTPS---------RIPIYALTAAALPEERAA 865
Query: 1194 CMKCGMDDYVSKPFEDEQL 1212
+ G+D Y++KP ++L
Sbjct: 866 GLAAGLDGYLTKPLNKKEL 884
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 28/143 (19%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL-----TPPHNFDACFMD 1133
L+ K++L+VDDN NRRV + + +T GR A+ L TP FD +D
Sbjct: 621 LRDKRVLLVDDNATNRRVLGKLVVQWEMRLTEAADGREALQVLEANASTP---FDVLLID 677
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
MP MDGF E +A + + + ++ +++ ++ +
Sbjct: 678 YHMPRMDGF--------------------ELAAALKQDARFRDLKLIMLSSASVRGLGMR 717
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAV 1216
C + G+D +++KP +L A+
Sbjct: 718 CRELGIDAFLTKPVARHELLKAI 740
>gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
Length = 717
Score = 267 bits (682), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 189/644 (29%), Positives = 300/644 (46%), Gaps = 113/644 (17%)
Query: 597 RIAQVENDYHEMMELKARAEAAD------------VAKSQFLATVSHEIRTPMNGVLGML 644
+I + + +Y E ++ + R + A+ +AKS+FLA +SHEIRTPMNG++G
Sbjct: 161 KIQEQQRNYSETLQAEIRQQTAELRAAKKEAEAANIAKSEFLAAMSHEIRTPMNGIIGFT 220
Query: 645 QMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNV 704
ML+DT LD Q ++AQT S L+SLIND+LD +K+E+G+L+ E +PF +V
Sbjct: 221 DMLLDTGLDEEQQEFAQTIKRSASALLSLINDILDFSKVEAGKLDLECIPFDPEITAQDV 280
Query: 705 LSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH 764
L K + IE+ + D +P V+GDPGR+RQ++ NL+GNS KFT+ KG + +++
Sbjct: 281 CDLVRPKVASRPIEVLCRIDDTLPANVMGDPGRYRQVLVNLMGNSAKFTK-KGELELAIA 339
Query: 765 LADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQ 824
+ D+ + + ++ + + + K + ++ E F+ D
Sbjct: 340 VDDETEETITLHARIRDTGIGIPEEKLESIF---------------EAFRQAD------- 377
Query: 825 LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGE 884
ST+R YGGTG+GLSI R + LM G
Sbjct: 378 ---------------------------------GSTTREYGGTGLGLSICRKIAALMHGH 404
Query: 885 IGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR 944
+ SE GSTF FT T + P+ + + R LV+DD + R
Sbjct: 405 VWAESELDVGSTFHFTATLNKA------PQQRIKRFNRVSLANKRVLVVDDNLTNLSILR 458
Query: 945 YHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004
+ L E+ V + S L L L ++ I D G L ++++ +
Sbjct: 459 HILMAAELHVVAIHDSSNVRSVLQQAIENHALFDLIILDIQMPAPD---GYALAHIIRHE 515
Query: 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPES 1062
L + +P L TS +E + K G LTKP R +L ++ DPE
Sbjct: 516 -----LAETATIP--LLAYTSSTERNAQRCKEAGFDAFLTKPTRREILFKTIEKLLDPEE 568
Query: 1063 SKKLQQKRKKPSLGHLLKGK-----QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
+ ++ + ++ + +IL+ +DN VN+++A L K G V GR A
Sbjct: 569 VIETAPTKETFITQYSVREEIKQSIRILLAEDNPVNQKLAVLILNKAGYQVEVASNGRKA 628
Query: 1118 VDKLT-PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH 1176
VD T P NFD MD+QMPEMDG AT ++R + G
Sbjct: 629 VDLFTRRPENFDLILMDIQMPEMDGLAATKELR---------------------SRGFNT 667
Query: 1177 VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
VPI+AMTA+ ++ E C+K GM+DY++KP + E ++ + ++
Sbjct: 668 VPIVAMTANAMKGDREICLKAGMNDYITKPVKREIIFEIIEKWL 711
>gi|288935843|ref|YP_003439902.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
gi|288890552|gb|ADC58870.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
Length = 895
Score = 267 bits (682), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 196/609 (32%), Positives = 291/609 (47%), Gaps = 106/609 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A A+ AKS FLA +SHEIRTPMNG+LGM Q+ +DT L A Q +Y +S + L+ +I
Sbjct: 261 AREANEAKSAFLANMSHEIRTPMNGILGMAQLCLDTPLTAEQREYLSLVMSSAQSLLHII 320
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD ++IESG+++ + P + + +++ A++KGIEL + +S VPEV+I D
Sbjct: 321 NDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVPEVLIVD 380
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQI+TNL+GN++KFT +G + +++ ADD
Sbjct: 381 GPRLRQILTNLLGNALKFTH-QGEVLLAIAPADDE------------------------- 414
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
RW+ F+ + DTG+GI E Q IF F
Sbjct: 415 ----------SRWR----FR-------------------IRDTGIGIAPEKQKAIFEAFS 441
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSST+R YGGTG+GL+IS LV LMGGE+ S+PG GS F+FT+ EG L
Sbjct: 442 QADSSTTRRYGGTGLGLTISARLVSLMGGELTVDSQPGAGSEFAFTLPL-EG----LHAA 496
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
P F R LV+DD S + L+++ + ++ A ++
Sbjct: 497 VSGSAPP-GRFNHQRVLVVDDNSTNLRLLDTMLRQMGLIPTCVDNASEALRRAAEG---- 551
Query: 975 VLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
P L+L+D + D + + L L + R+ +I +L++ D +
Sbjct: 552 --PPWPLILLDAQMPDMDGVSLALELSALPEARQS---------QIIMLSSMSRHFDANM 600
Query: 1034 LKSDGIVTLLTKPLRL----SVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089
LK GI L KP+ V+ G + + G IL+ +D
Sbjct: 601 LKRIGIAHYLHKPVAQRELHQVIAGILV---PTPVATTAPAPVAAPVRAQAGLHILLAED 657
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
N+VN++VA L++ G V+ GR A+++ +D +DLQMPEMDG A +R
Sbjct: 658 NLVNQKVARRLLEQLGHRCEVVNNGREALERWRAT-CWDLLLIDLQMPEMDGETAIRLLR 716
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
E +A G H P +AMTA +Q E+C+ G DDY++KP
Sbjct: 717 ------EETLARGRE-----------HQPAMAMTAHAMQGDRERCLAMGFDDYIAKPVSQ 759
Query: 1210 EQLYTAVAR 1218
E L A+AR
Sbjct: 760 EALREAIAR 768
>gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 1084
Score = 266 bits (681), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 203/622 (32%), Positives = 283/622 (45%), Gaps = 116/622 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A AKS FLA +SHEIRTPMNG++GM + + TEL + Q DY S L+
Sbjct: 557 KEEAETASRAKSDFLANMSHEIRTPMNGIIGMTHLTLQTELTSRQRDYLTQISTSANTLL 616
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++ND+LD +KIE+G+LE E F L VL+ V S+ A +KG+EL +S VP V+
Sbjct: 617 RIVNDILDFSKIEAGKLEMEHADFQLEQVLEEVASIADLSAAEKGLELLSRISPDVPPVL 676
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GD R QI+ NLVGN+IKFTQ GH+ V S+ +H+
Sbjct: 677 EGDALRLSQILLNLVGNAIKFTQ-SGHVLV---------------------SVTQERHEG 714
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
K +L +V DTG+G+ E +F
Sbjct: 715 SKT----------------------------------RLRFSVSDTGIGMTSEQIGNLFE 740
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE---GER 908
F QAD+ST+R YGGTG+GL+I + LV LMGGEI S PG GS F FT F ER
Sbjct: 741 SFTQADNSTTRRYGGTGLGLAICKRLVNLMGGEIHVRSTPGHGSDFIFTAEFGTVAVPER 800
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
L P G R L++DD + + L+ ++ A S+ A
Sbjct: 801 RLLLPS--------HPLHGERILIVDDNELSRNILSGMLREFQLDPVSAASVGEAVRLCR 852
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK--IFLLATSI 1026
D ++ + LV M + I LPK + L +I
Sbjct: 853 DAA--------------REGRPYRVALVDWLMPGMNGKDTAQAICAALPKRPVILFMATI 898
Query: 1027 SETDRDELKS------DGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-- 1078
DR ++ + D + L+TKP+ S LI E + + R +PS
Sbjct: 899 H--DRPDVLAHIREGKDIPMRLITKPVTPSSLISALLEAEQPQDR--PDRAEPSAAPFPE 954
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L G ++L+ +DN +NR+VA L+ G V G AV+KL +DA MD+QMP
Sbjct: 955 LVGARVLLAEDNAINRQVANEILQSSGVSVEPAGDGLEAVEKLW-EGGYDAVLMDIQMPG 1013
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG +AT +R F N +PI+AMTA + E+ + G
Sbjct: 1014 MDGLKATRILREYAR---------------FDN-----LPIIAMTAHAMNGDREKSLSVG 1053
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
M DY++KP E L + +AR+
Sbjct: 1054 MQDYIAKPIEPSVLLSTLARWI 1075
>gi|427714672|ref|YP_007063296.1| PAS domain-containing protein [Synechococcus sp. PCC 6312]
gi|427378801|gb|AFY62753.1| PAS domain S-box [Synechococcus sp. PCC 6312]
Length = 1154
Score = 266 bits (681), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 223/751 (29%), Positives = 337/751 (44%), Gaps = 115/751 (15%)
Query: 481 TPEQRIEATLGYLG------ASYDVPSLVEKLLHQ-LASKQTIVVNVYDTTNASAPINMY 533
TPE + YL + ++P ++L + L S Q VV+ + +A I +
Sbjct: 492 TPELDVPLVAEYLAEGITSISQLEIPISGNRMLERVLVSDQAWVVDRVEQEPETASIAEF 551
Query: 534 GPDVTDTGLLRVSNLDFGDPSRKHEMH-CRFKQKPPVPWTAINASIGVVV-ITLLVGHIF 591
++ LL V G+P+ +H C + + ++ V I L +
Sbjct: 552 CQQISLKSLLAVRTSYRGEPNGLIALHLCHHSHRWQLAEVEFLETVAAQVGIGLAQAQLL 611
Query: 592 HAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
+ Q+ E+ + + AE A+ AKS FLAT+SHEIRTPMN V+G+ +L+DT
Sbjct: 612 SQETEQREQLLIQNQELEQARLSAELANRAKSDFLATMSHEIRTPMNAVMGLTSLLLDTP 671
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
L Q D+ QT +G L+++IND+LD +KIESG + E PF L D ++ VL L ++K
Sbjct: 672 LSPQQQDFIQTIRQAGDTLLTIINDILDFSKIESGSMSLEQRPFDLADCIEEVLDLLATK 731
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
A++K IEL S P V+GD R RQI+ NLVGN +KFT +G + + V D R
Sbjct: 732 ADEKNIELGYTYSCHTPRQVLGDVTRVRQILVNLVGNGVKFT-TQGEVMIHV----DSRP 786
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
+ D L F + D
Sbjct: 787 QTAQGDYELR-------------------FAIED-------------------------- 801
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
TG+GIP + R+F PF Q D+ST+R YGGTG+GL ISR L +LMGG++ S+
Sbjct: 802 -----TGIGIPDDRLDRLFKPFSQVDASTTRQYGGTGLGLVISRRLCQLMGGDMTVQSQV 856
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G G+TF FT+ R L P P+ +G + LV+DD A + LQ L
Sbjct: 857 GVGTTFRFTIRVPVEARICLPP------PENPALQGKQVLVVDDHEPIAHLLGARLQELG 910
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVL-IDKDVWDKEIGLVLHYMLKQQRRKGGL 1010
+ S +V + A VL I WD + L+ M + G
Sbjct: 911 L-------------------SPNVYSEAAKVLQIPDQPWD--VALIDLQMPGLNGIQLGQ 949
Query: 1011 EISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKR 1070
++ + P++ L+ + + + V L KP+R L + + + Q
Sbjct: 950 QLRQKYPQLPLILMTPRSWLQTAVAKSLFVAFLQKPVRAKQLGQTLLQALDPHTQAPQTP 1009
Query: 1071 KKPSLGHLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
+L L + +IL+ +DN VN++VA L++ G G + L +
Sbjct: 1010 APATLDVTLGERLPLRILLAEDNPVNQKVARHILQRLGYQADVAVNGLEVLAALE-RQPY 1068
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD+QMPEMDG T +I E+ ++ + W I+AMTA+ +
Sbjct: 1069 DVILMDIQMPEMDGLTTT-------EKICERWSAQQRP---------W---IIAMTANAL 1109
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ E C + GMDDYVSKP + E L A+ R
Sbjct: 1110 EGDREMCFRAGMDDYVSKPVKIESLVAALQR 1140
>gi|428772393|ref|YP_007164181.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
gi|428686672|gb|AFZ46532.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
Length = 1402
Score = 266 bits (681), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 195/637 (30%), Positives = 298/637 (46%), Gaps = 119/637 (18%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ K +AEAA+ AKSQFLAT+SHEIRTPMN V+GM +L+DTEL Q ++ +
Sbjct: 705 QELRIAKEQAEAANQAKSQFLATMSHEIRTPMNAVIGMTGLLLDTELTPEQQEFTEIIRT 764
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+S+IND+LD +KIESG+LE E PF L+ V++ L L + KA+QK IEL ++
Sbjct: 765 SSDSLLSIINDILDFSKIESGKLELEQQPFSLYQVIEESLDLLAPKASQKNIELVYFLDP 824
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+ +IGD R RQ++ NL+ N++KFT G + +SV
Sbjct: 825 DISPSIIGDVTRLRQVLVNLLSNAVKFT-PTGEVILSV---------------------- 861
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
T+ + DR S LL +EDTG+GIP
Sbjct: 862 -----------TIDSHSIGDRRYS-------------------NLLFVIEDTGIGIPRNR 891
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE--------------- 890
R+F F Q D+ST+R YGGTG+GL+I + LV LM G + S+
Sbjct: 892 MDRLFKAFSQVDASTTRNYGGTGLGLAICQKLVHLMKGNMWVESKGHIAGEYPPQWQITS 951
Query: 891 ----PGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH 946
PG+ F+ F+ S++ + S +G + L++DD + + R
Sbjct: 952 HSETPGSKFCFTIKTRFSSNIPPSIEAQ-------NSFLQGKKVLIVDDNEVNRRMLRTQ 1004
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
+ + V + S + + +++ P + L ++D + + V +
Sbjct: 1005 CDKFGLEVLITASGEETLALIAEQ------PDIDLAILDMQMPKMDGATV-------AKN 1051
Query: 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPL---RLSVLIGCFQEDPESS 1063
+E R+ P I L + E ++ LK L KP+ RL ++ ++P S
Sbjct: 1052 ISAMEKYRSTPLILLSSIGHGEIEK-ALKEVNWAATLIKPIKQSRLFYILSKVLQNPLPS 1110
Query: 1064 KKLQQKRKKPSLGHLLKGKQ--------ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
K L K SL + ++ IL+ +DN++N++V LK+ G V G
Sbjct: 1111 KPL-NKLSPVSLTEAIGEEELSVTSPLKILIAEDNIINQKVITNILKRLGYRADVVGNGL 1169
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
+D L ++D MD+QMPEMDG AT QIR L N N
Sbjct: 1170 EVLDALR-RQSYDLILMDVQMPEMDGLTATRQIRTLWNSSNSDFQGQRPC---------- 1218
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
I+AMTA+ ++ ++C++ GMDDY+SKP + E L
Sbjct: 1219 ---IIAMTANAMEGDRQRCLEAGMDDYLSKPVKVEAL 1252
>gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234]
gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234]
Length = 989
Score = 266 bits (681), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 202/631 (32%), Positives = 293/631 (46%), Gaps = 106/631 (16%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
R Q+ E+ + AE A +AKS+FLA +SHEIRTPMNGV+G+ ++L TEL Q
Sbjct: 321 RTEQLRKSREELERARDAAEQASIAKSEFLANMSHEIRTPMNGVIGIAELLEGTELSEQQ 380
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
Y +S L+ LIND+LD +KIE+GRLE E +PF L D L + L + +A KG
Sbjct: 381 RRYVSIILHSADTLMDLINDILDFSKIEAGRLELETIPFVLRDTLGDTLQTLAKRAADKG 440
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
+ELA ++ VP+ ++GDP R RQII NLVGN+IKFT++ G + V V L
Sbjct: 441 LELACHIPPEVPDHLMGDPTRLRQIIVNLVGNAIKFTEN-GEVVVDVTLV---------- 489
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
+ H +V +T G P + + +E F D + T
Sbjct: 490 -----GQGDHGAHLQFEVRDTGIGIPEAQQERIFEAFAQADASTT--------------- 529
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
R YGGTG+GL+I+ L E MGG + S+PG GS
Sbjct: 530 -------------------------RQYGGTGLGLAIAAQLAEKMGGRMQLDSKPGVGSV 564
Query: 897 FSFTVTFTEGERNSLDPKWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH 955
F+F F L P+ + P +E G R LV+DD + ++ + M
Sbjct: 565 FTFAADF------GLAPEEGKARPVREAELHGRRVLVVDDNATNRQILEEIVVNWGMIPI 618
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
VA A + L ++ LP LAL+ DV G+ + R + GL+ +R
Sbjct: 619 VATDGMAALNALEQ--ASGALPDLALL----DVMMP--GMSGFELAACLRLRSGLKDTR- 669
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL-------IGCFQEDPESSKKLQQ 1068
I +++++ +D L+ + LL KP++ S L +G + E
Sbjct: 670 ---IVMMSSAGRPSDEALLQKLDVSRLLVKPVKQSDLLNAITNALGVSMREDEGDGPAGA 726
Query: 1069 KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
R + S G +L+ +D VNR+VA L K G V V G+ AV+ + +D
Sbjct: 727 ARHRTS-----PGLTVLLAEDGAVNRQVAVDLLTKRGHRVVAVGNGQEAVEAVE-RGGYD 780
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD+ MP MDG AT IR L I + A VPI+A+TA
Sbjct: 781 LVLMDVHMPVMDGLAATAAIRAL---IRPESA---------------RVPIVALTASATA 822
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
A E+C+ GMD YV+KPF +L+ V ++
Sbjct: 823 ADRERCVAAGMDGYVTKPFRATELFHVVEQY 853
>gi|451980027|ref|ZP_21928427.1| putative Multi-sensor hybrid histidine kinase [Nitrospina gracilis
3/211]
gi|451762718|emb|CCQ89649.1| putative Multi-sensor hybrid histidine kinase [Nitrospina gracilis
3/211]
Length = 1661
Score = 266 bits (681), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 190/622 (30%), Positives = 305/622 (49%), Gaps = 95/622 (15%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+M+ + A +A+ AKS+FLA +SHEIRTPMN +LG+ + + E+ Q Y +
Sbjct: 879 EELMQAQTEAISANEAKSRFLANMSHEIRTPMNAILGLAHLALQNEMPPKQKGYLEKIEK 938
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
SG++L+ +IND+LD +K+E+G+L+ E +PF + + L+++ + A + EL + S
Sbjct: 939 SGQNLLGIINDILDFSKVEAGKLDLEMIPFEIRETLEHISQQQTYFAEECETELVFFCSP 998
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VP VIGDP R Q++TNLV N++KFT KG + V L + +K +
Sbjct: 999 MVPGRVIGDPLRVAQVLTNLVSNALKFT-SKGTVAVYTDLVESPNAKQN----------- 1046
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
R++L V+DTG+G+ +
Sbjct: 1047 -----------------------------------------RVELKFVVQDTGIGMAEDQ 1065
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
+F F QAD+ST+R YGGTG+GL+I+R LV LM G I SEPG G+TF+ + F E
Sbjct: 1066 IQGVFGAFTQADASTTRKYGGTGLGLAITRQLVGLMRGRIHVESEPGEGTTFTVALPF-E 1124
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
E+ L+ +Q S RALVI+ + ++ L+ + A++++
Sbjct: 1125 CEQEELERATRQ-----SHKIKNRALVIESNPVFGKMLEGMLRSVSFDTDYASTLERGER 1179
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
L+ S + VL+D +GLV + R K+ L+A
Sbjct: 1180 ILTQAESAN---PYHFVLLD-------LGLVQSNWSEVCARLKASNPQSEQMKLVLVAPQ 1229
Query: 1026 ISETDRDELKSDGIVTLLTKPLRLSVLIGC-----FQEDPESSKKLQQKRKKPSLGHLLK 1080
+ ++ + I +L KP+RLS L + +D + + K +
Sbjct: 1230 LEYLQLVTVEGEAIDGVLVKPVRLSQLFDMVTSLFYNKDSQMMRSAACKPESAFDPTTFH 1289
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
G ++LV +DN +N+ V E L+K G VT VD G+AAVD+L+ FD MDLQMP MD
Sbjct: 1290 GCRVLVAEDNEINQEVVEELLQKVGFDVTIVDNGKAAVDRLS-SEEFDMVLMDLQMPVMD 1348
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G +A QIR +++ S +P++A+TA+ + E+ + GM+
Sbjct: 1349 GLEAARQIRQ-----DKKFES---------------LPVIALTANAMTGDRERTAEAGMN 1388
Query: 1201 DYVSKPFEDEQLYTAVARFFMS 1222
D+V+KP + E +Y ++R+ S
Sbjct: 1389 DHVTKPIDPESMYKTLSRWIKS 1410
>gi|443475298|ref|ZP_21065252.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443019888|gb|ELS33917.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 1481
Score = 266 bits (681), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 194/616 (31%), Positives = 303/616 (49%), Gaps = 104/616 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
+A AE A +AKS FLA +SHEIRTPMN V+GM +L+DT L+ Q D+AQT SG L+
Sbjct: 797 RADAEQAAIAKSSFLAMMSHEIRTPMNAVIGMTGLLLDTTLNDQQRDFAQTIRCSGDHLL 856
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+LIN++LD +K+E+G + E + F L ++ V + + A K +E+ ++ VP+ +
Sbjct: 857 NLINEILDFSKLEAGEMLLENLDFDLEISIEEVAEILAPFAQSKELEIVTFIHTDVPKCI 916
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GD GR RQ++ NLV N+IKFT G I + V L + S+ ++
Sbjct: 917 QGDVGRLRQVLLNLVNNAIKFTI-HGEITIEVSLIAENDSEATLR--------------- 960
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
F V+D TG+GIP Q ++F
Sbjct: 961 ---------FAVID-------------------------------TGIGIPKGEQSKLFQ 980
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
PF Q D+ST+R YGGTG+GL+I + +VELMGG+I S+ GSTFSF + F
Sbjct: 981 PFTQVDASTTRHYGGTGLGLAICKQIVELMGGKIYLESQENFGSTFSFELLF-------- 1032
Query: 912 DPKWQQYVP----DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
K Q P D+ +G+R LV+DD S + +Y L +M V + A S+L
Sbjct: 1033 --KKQSNCPSDNYDLPSLQGMRVLVVDDSSTNCRILKYQLSAWDMRVDITEYPMDAMSHL 1090
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+ ++ LV++D + D + G L +K+ I +N I L +S+
Sbjct: 1091 --IHAVNIGDPYQLVILDMQMPDLD-GESLGKQIKES------PILKNTHLIML--SSLD 1139
Query: 1028 ETDR-DELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK 1082
TD L G L KP++ L+ +I + P + K SL ++ K
Sbjct: 1140 RTDEVKRLLDIGFAHYLRKPVKKIRLLNSIINSIKGLPPDLAIVPSKDDNQSLDPIVTSK 1199
Query: 1083 -QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ILV +D+ +N++VA L G V G+ ++ + H +D MD QMP +DG
Sbjct: 1200 LKILVAEDSPINQKVAINQLLNLGYSADVVGNGKEVLELVEQIH-YDMILMDCQMPILDG 1258
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ T ++R LE++ +E+ + I+A+TA+ ++ ++C+ GMDD
Sbjct: 1259 YVTTRKLRDLESKADERRP----------------IVIIALTANAMKDDRDRCLAAGMDD 1302
Query: 1202 YVSKPFEDEQLYTAVA 1217
Y+SKP E+L ++
Sbjct: 1303 YLSKPLRKEELAAMIS 1318
>gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
Length = 1353
Score = 266 bits (680), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 203/617 (32%), Positives = 295/617 (47%), Gaps = 110/617 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + + +AE A+ AKS+FLAT+SHEIRTPMN VLG +L+DT L+ Q D+ QT H +
Sbjct: 809 ELEQARLQAELANRAKSEFLATMSHEIRTPMNAVLGFTNLLLDTPLNEQQRDFLQTLHQA 868
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G+ L+++IND+LD +KIESG+L E PF + + +++VLSL +SKA +K +EL +
Sbjct: 869 GEALLTIINDILDFSKIESGKLVLEQQPFDVRECVEDVLSLLASKAQEKELELLYTCTPE 928
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
P + GD R RQI+ NLVGN IKFT + V+VH+ VL++
Sbjct: 929 TPAQIKGDVTRLRQILVNLVGNGIKFTHEGQ---VAVHVG------------VLKRE--- 970
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
K + F++ D TG+GIP +
Sbjct: 971 --------------------GKDFLQFQVQD-------------------TGIGIPRDRL 991
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F PF Q D+ST+R YGGTG+GL IS+ L ELMGG++ S G G+TF+FT+ EG
Sbjct: 992 DRLFKPFSQVDASTTREYGGTGLGLVISKRLCELMGGDMSVESTEGQGTTFTFTI-LAEG 1050
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
++ + PK G R LVIDD + E + + N + Y
Sbjct: 1051 QKPYVPPKVH------PALEGKRVLVIDDNAASRE---------NLCTLLHNWGMVPIGY 1095
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
P L +ID ++ + GL L L+ + P I L S
Sbjct: 1096 SDPRLVLEAAPPWDLAVIDLNM-PQMTGLQLAERLQSEPN------FNQQPMILLTPLSW 1148
Query: 1027 SET-DRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKG 1081
ET R EL I + KP+R LI + + L + +LG+
Sbjct: 1149 LETASRKEL----ITAHVPKPIRPLTLRQTLIRTLSSESATQPALTKTGIDLNLGNRFPL 1204
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ IL+ +DN VN++VA LK+ G G ++ L +D MD+QMP+MDG
Sbjct: 1205 R-ILLAEDNAVNQKVALHILKRMGYRADVAANGLEVLEALQ-QRPYDVILMDVQMPKMDG 1262
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ T +I A+ + W I+AMTA+ + E+C GMDD
Sbjct: 1263 LETTERI----------------CAQWPPSQRPW---IIAMTANALAGDRERCFAAGMDD 1303
Query: 1202 YVSKPFEDEQLYTAVAR 1218
Y+SKP + E L A+ R
Sbjct: 1304 YISKPIKIEALAAALNR 1320
>gi|428304414|ref|YP_007141239.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
gi|428245949|gb|AFZ11729.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Length = 1100
Score = 266 bits (680), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 194/634 (30%), Positives = 313/634 (49%), Gaps = 94/634 (14%)
Query: 591 FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
F I I + + + + K AE+A AKS+FLA +SHEIRTP+N V+GM +L+DT
Sbjct: 418 FIGEIQDITERKQAEFVLEQAKIAAESATRAKSEFLANMSHEIRTPLNAVIGMTTLLLDT 477
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
LD Q ++ +T +SG+ L++L+ND+LD +KIESG+L+ + PF+L ++ L L +S
Sbjct: 478 HLDPQQQNFTETIRSSGEALLTLVNDILDFSKIESGKLDLDQYPFNLRACIEESLDLIAS 537
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
KA +K +ELA + P+ ++GD R RQI+ N++ N++KFT G + V+
Sbjct: 538 KAGEKKLELAYLIYPPTPKTIVGDHNRLRQILVNILSNAVKFT-PAGEVVVT-------- 588
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKL 830
V K+L K + + FP + ++
Sbjct: 589 ----VTTKILSK------------LSEVDNFP-----------------------QKYEI 609
Query: 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
++DTG+GIP + ++F F Q DSST+R YGGTG+GL+IS+ LVELM G+I SE
Sbjct: 610 QFAIKDTGIGIPNDRIEKLFQSFSQVDSSTTRHYGGTGLGLAISKQLVELMDGQIWVESE 669
Query: 891 PGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRL 950
GSTF+FT+ E ++ D ++ G R L++D+ +V +Q
Sbjct: 670 VDRGSTFNFTL-IVESTQDQADI---HNTKEIHPLSGKRILIVDNNITNQQVLILQMQCW 725
Query: 951 EMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL 1010
++ A S+Q A S L Q L ++D+ + + + G++L ++Q L
Sbjct: 726 KIITRAATSVQEALSLLQ-------AEQFDLAILDRQMPEMD-GVMLTSAIRQ------L 771
Query: 1011 EISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCF--QEDPESSK 1064
+NLP + L + + ++D L KP++ S +L+ F Q +S
Sbjct: 772 PSCQNLPLVMLNSLGNDQITEQNSEAD-FAGFLNKPVKQSQLYNLLVAIFTGQSIKLTSY 830
Query: 1065 KLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
Q + P L + + ILV +D +VN+++ L++ G + G ++ L
Sbjct: 831 HPNQAKFDPHLATRIPLR-ILVAEDFVVNQKMILLMLERMGYRADIANNGFEVLEALH-R 888
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
+D MD+QMPEMDG +AT IR I+A+TA
Sbjct: 889 QPYDLVLMDVQMPEMDGLEATRSIRQ-------------------NTTSCPQPRIIAITA 929
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ +Q E C++ GMDDY+SKP E+L A+ +
Sbjct: 930 NAMQGDKEACLEAGMDDYLSKPVRVEELVAALNK 963
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
H L GK+IL+VD+N+ N++V ++ I + A+ L FD +D QM
Sbjct: 698 HPLSGKRILIVDNNITNQQVLILQMQCWKIITRAATSVQEAL-SLLQAEQFDLAILDRQM 756
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PEMDG T IR L + ++P++ + + EQ +
Sbjct: 757 PEMDGVMLTSAIRQLPS--------------------CQNLPLVMLNSLGNDQITEQNSE 796
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
+++KP + QLY + F
Sbjct: 797 ADFAGFLNKPVKQSQLYNLLVAIF 820
>gi|126658998|ref|ZP_01730139.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
gi|126619655|gb|EAZ90383.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
Length = 881
Score = 266 bits (680), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 197/623 (31%), Positives = 302/623 (48%), Gaps = 122/623 (19%)
Query: 616 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIN 675
E + AKS+FLA + HEIRTP+N V GM +L+DT+L+ Q ++ NSG++L+++IN
Sbjct: 232 EELNRAKSEFLAMIGHEIRTPLNAVTGMTGLLLDTQLNDQQKEFVSIIRNSGENLLTMIN 291
Query: 676 DVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDP 735
++LD +KIE+ +LE E PF L ++ VL LF S+A++K +ELA + P +IGD
Sbjct: 292 NILDFSKIEAQKLELEEQPFELGPCIEEVLRLFVSQASKKNLELAYLIESNTPSAIIGDS 351
Query: 736 GRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVY 795
R +QI+ NL+GN++KFT+ KG + + V+ A ++S+ D K
Sbjct: 352 TRLKQILANLIGNAVKFTK-KGEVVIYVN-ATPIKSRQDSK------------------- 390
Query: 796 NTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855
Q R +L V+DTG+GIP + R+F PF Q
Sbjct: 391 ----------------------------QNSRYELRFAVKDTGIGIPSDRCNRLFQPFSQ 422
Query: 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV-----------TFT 904
D+ST+R YGGTG+GL+IS+ L ELMGG + S G GSTF+FT+ T
Sbjct: 423 VDASTTRKYGGTGLGLAISKGLSELMGGNMWVHSTEGKGSTFNFTIQTLAAPSSSPATSQ 482
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
EGER E G R L+IDD ++ Q M +S + A
Sbjct: 483 EGER---------------ELMGKRMLIIDDNLTNQKILTNQAQSWGMFTCAVDSGEKAL 527
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
+L + V ++D ++ + + G+ L ++QQ G LP + L +
Sbjct: 528 EWLRRGITFDV------AILDMNMPNMD-GVNLARQIRQQPNCKG------LPLVMLSSI 574
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLK 1080
+ +E K + +L KP++ S L+ F +P K+ + + SL L
Sbjct: 575 TRAEMSAQNSKEE-FAAVLIKPVQQSQLYYSLMQIFAGNP---IKITKSQSDQSLEESLL 630
Query: 1081 GK----QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
+ +ILV +D +VN+ V L+K G V G+ ++ L ++D MD++M
Sbjct: 631 AQTIPLRILVAEDVVVNQEVIHLLLEKLGYWADMVSNGQEVLEALK-TRSYDLILMDVRM 689
Query: 1137 PEMDGFQATWQI-RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
PEMDG T I R L E + I+AMTA+ E+C+
Sbjct: 690 PEMDGLTTTHHICRTLSAEERPR--------------------IIAMTAESTPGDREKCL 729
Query: 1196 KCGMDDYVSKPFEDEQLYTAVAR 1218
GMDDY++KP E+L A++R
Sbjct: 730 VAGMDDYIAKPIRIEELKQALSR 752
>gi|443475295|ref|ZP_21065249.1| Hpt sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443019885|gb|ELS33914.1| Hpt sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 850
Score = 266 bits (680), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 203/620 (32%), Positives = 305/620 (49%), Gaps = 107/620 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AEA++ AKS FLAT+SHEIRTPMN V+GM +L++T+LD Q D+A T HNSG+ L+
Sbjct: 178 KQIAEASNQAKSSFLATMSHEIRTPMNAVIGMTGLLLETDLDPRQQDFANTIHNSGEHLL 237
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+LIN++LD +K+E+ ++ E + F L ++ V + + A+ KG++LA+++ VP+ +
Sbjct: 238 NLINEILDFSKLEAREMQLEELDFELESSIEEVADILAGSAHSKGLDLALFIHPDVPKYL 297
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GD GR RQ++ NL N+IKFT+ +G + + V +A K
Sbjct: 298 KGDIGRLRQVLLNLTNNAIKFTR-QGEVTIEVAIA-----------------------KE 333
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
D +LS F V+ DTG+GI LEAQ ++F
Sbjct: 334 DLTTVSLS-FSVI-------------------------------DTGIGISLEAQSKLFE 361
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF-TEGERNS 910
PF+Q D+ST+R YGGTG+GL+I + LV LMGG I SE GSTF FTV F + E S
Sbjct: 362 PFIQVDASTTRQYGGTGLGLAICKQLVRLMGGSIYVESEENKGSTFWFTVPFQKQSEEGS 421
Query: 911 LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDT 970
Y VS + LR LV+DD + + L+ +M V + A L
Sbjct: 422 -------YPLAVSALQDLRVLVVDDSVTNCNILYHQLKSWKMQVDILIQSTEAIDALHRA 474
Query: 971 CSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
+ Q AL+ + D E L Q + I R+ I L TS+ +
Sbjct: 475 IAIGQPYQFALLDMQMPDLDGE-------QLGTQIKSS--PILRDTHLIML--TSLDQNG 523
Query: 1031 -RDELKSDGIVTLLTKPLR-LSVLIGCFQEDPESSKKL--------QQKRKKPSLGHLLK 1080
+ G L KP+R L +L S KL ++ K PS
Sbjct: 524 AASRMLEIGFADYLRKPVRKLRLLNSLINTISGKSAKLIDQPPEFMAEEVKLPS------ 577
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+IL+V+D+ +N++V L G V V G+ A+D L ++ MD QMP MD
Sbjct: 578 QLKILLVEDSPINQKVTINQLHNLGYRVDVVANGQEALDILDKI-SYSIILMDCQMPVMD 636
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G+ + +IR E E ++ +A V I+A+TA+ ++A ++C+ GMD
Sbjct: 637 GYVTSRRIR--EREASQNLAGA-------------GVAIIALTANAMKADRDRCIAAGMD 681
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
D++SKP + L +A ++
Sbjct: 682 DFLSKPVRKQDLAKKLAYWY 701
>gi|344344724|ref|ZP_08775584.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum 984]
gi|343803658|gb|EGV21564.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum 984]
Length = 1085
Score = 266 bits (680), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 199/626 (31%), Positives = 294/626 (46%), Gaps = 106/626 (16%)
Query: 601 VENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
V+ E+ + K +AEAA AKS FLA +SHEIRTP+N VLG+ +L L D A
Sbjct: 403 VDARTRELTQAKEQAEAATQAKSIFLANMSHEIRTPLNAVLGLAYLLEHQSLPGEARDLA 462
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
H SG+ L++++NDVLD ++IESG++E E PF L VLDN+ +L ++ + + LA
Sbjct: 463 HKIHRSGRSLLAILNDVLDVSRIESGKIEIEQAPFRLTTVLDNLATLMTATTKRTALNLA 522
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
I + GD R Q++TNL N+IKFT D G
Sbjct: 523 IVPPSCSEWPLCGDALRLGQVLTNLANNAIKFT-DSG----------------------- 558
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
SV+ + D + + T+T R+ L +V+DTG+G
Sbjct: 559 -----SVEVRVDPI----------------------ETTDT-----RVWLRFSVKDTGIG 586
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
I L + R+F PF QAD ST+R +GG+G+GL ISR LVELMGG +G S PG GSTF F
Sbjct: 587 IDLATRTRLFQPFGQADVSTTRRFGGSGLGLVISRRLVELMGGRMGLESRPGVGSTFWFE 646
Query: 901 VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
++F+ ++L P+ + R L+ +R + L +S
Sbjct: 647 LSFSRLAADTL--------PERAPLRTRLLLIAQPPCVRDGLL-ATTAALGWTGRATDSA 697
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDKE---IGLVLHYMLKQQRRKGGLEISRNLP 1017
+ A +L D T P+ A VL+D + +H L + RR P
Sbjct: 698 ETALHWLRDD-PTLQGPETA-VLLDWRAPTRRGAATARAIHAALPEARR----------P 745
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKL---QQKRKKPS 1074
+F L T +E R E ++ + +L +PL S L +++L R P+
Sbjct: 746 LLFALTTHPTEQTRAEPDAELVEAVLVEPLAPSALYDTVAR--TRARRLGTPDASRDTPT 803
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP-PHNFDACFMD 1133
L G ++LVVDD+ NR VA+ L GA ++ D G+ A+D+L P D MD
Sbjct: 804 RARRLAGLRLLVVDDSQTNREVAQRILADEGAQISLADEGQQALDRLAAHPEAVDLVLMD 863
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP MDG +AT +IR N L +P++A+TA +
Sbjct: 864 VQMPHMDGHEATRRIRR--------------------NPTLSQLPVVAITAGTMHTQQHA 903
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
GMD ++ KPF+ E++ + R
Sbjct: 904 ARTAGMDGFIGKPFDVEEVVAVILRL 929
>gi|392551218|ref|ZP_10298355.1| GGDEF domain protein [Pseudoalteromonas spongiae UST010723-006]
Length = 1380
Score = 266 bits (680), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 195/626 (31%), Positives = 305/626 (48%), Gaps = 103/626 (16%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
+ A +E E+ +AE A KS+FLA +SHEIRTPMNGV+GMLQ+L D+ L Q
Sbjct: 836 KTASLEQQAKELKLALQKAETATKLKSEFLANMSHEIRTPMNGVIGMLQLLKDSRLSDEQ 895
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
A +S K L++LIND+LD +KIE+ R+E E++ F L ++L+ + + A K
Sbjct: 896 AHRVSIASSSAKSLLTLINDILDFSKIEADRIELEYIDFDLRNLLEKLAESVALDAQLKD 955
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
+E+ + ++ V DPGR RQI+TN++ N++KFT+ G I + L D
Sbjct: 956 VEVILDINAISVSHVNSDPGRIRQILTNILSNAVKFTE-SGQIVIRAELCD--------- 1005
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
S+K+ GF +L ++D
Sbjct: 1006 --------------SEKI-----GFS--------------------------QLNCEIQD 1020
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+GI + +F F Q D+ST+R YGGTG+GLSI+R L L+ G++ S+ G GS
Sbjct: 1021 TGIGIAKDKVTSLFDAFSQGDASTTRKYGGTGLGLSITRKLCNLLQGDVTVTSKLGEGSC 1080
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
F+ T +N P V D F L L+ D +V + L+ V
Sbjct: 1081 FNVTCLV----KNIAQPT---KVNDGPLFAFLTMLIADANDTNCQVIKQLLEGESANAIV 1133
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
ANS + ++LS S L + LVL+D +++ + +L+QQ + N
Sbjct: 1134 ANSAEQVMAHLS-----SDLATIDLVLMDAKLYEND-------LLQQQLTR---LTQTNK 1178
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED-PESSKKLQQKRKKP-S 1074
++ ++A + D D ++ I +L KP+ LI + +SS+ ++P S
Sbjct: 1179 TQLVIMAPINKQFDNDTCEAGNISAILAKPVTPKGLIKVIKSTLQKSSEHTDDASEQPTS 1238
Query: 1075 LGH----LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR---AAVDKLTPPHNF 1127
L + +L+V+DN VN+ VA LK G G AA+ + P ++
Sbjct: 1239 LNDTDTTIFNDVHVLLVEDNPVNQMVALSVLKNLGVTADVASNGHDALAALKAMDKPSDY 1298
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
A MD QMPEMDG++ T +I+ E +G+S+A ++PI+AMTA+ +
Sbjct: 1299 AAIIMDCQMPEMDGYETTSKIKSGE--------AGKSAA---------NIPIIAMTANAM 1341
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLY 1213
Q ++C+ GMDDY++KP E E +Y
Sbjct: 1342 QGDEQKCLAAGMDDYMTKPIEKETVY 1367
>gi|295134137|ref|YP_003584813.1| two-component system sensor histidine kinase/response regulator
hybrid [Zunongwangia profunda SM-A87]
gi|294982152|gb|ADF52617.1| two-component system sensor histidine kinase/response regulator
hybrid [Zunongwangia profunda SM-A87]
Length = 1567
Score = 266 bits (680), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 195/636 (30%), Positives = 311/636 (48%), Gaps = 107/636 (16%)
Query: 595 INRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA 654
I R ++EN ++E K +AEAA +KS+FLA +SHEIRTP+NGV+G +LM TEL+
Sbjct: 916 ITRRKEMENS---LVEAKLKAEAASKSKSEFLANMSHEIRTPLNGVIGFTDLLMKTELNT 972
Query: 655 AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQ 714
+Q Y +T +NS L+ LIND+LD +KIE+G+LE ++ ++ + + KA++
Sbjct: 973 SQKQYMETVYNSANTLLDLINDILDFSKIEAGKLELSVEKINIIELCGQTIDVVKHKAHE 1032
Query: 715 KGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVD 774
KG+E+ + +S +V + GD R RQI+TNL+GN++KFT +KG I + +
Sbjct: 1033 KGLEVLLNISQKVDRYIYGDSVRIRQILTNLLGNAVKFT-NKGEIELRIEAG-------- 1083
Query: 775 VKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
N NT Q + V
Sbjct: 1084 -------------------------------------------NKNTEHQR---EYTFIV 1097
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
DTG+GI + RIF F Q DSST+R YGGTG+GL+IS L+ LM ++ SEPG G
Sbjct: 1098 RDTGIGIAPQNLERIFKAFDQEDSSTTRKYGGTGLGLTISNKLLYLMNSKLDVQSEPGIG 1157
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
S+FSF V F E S + + +V L+IDD + + L ++
Sbjct: 1158 SSFSFKVYFESEEGASFLDENSSKITNV--------LIIDDNYNNQVILKEMLAIEDIQC 1209
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV-WDKEIGLVLHYMLKQQRRKGGLEI- 1012
H A++ A + L + QLA+V D ++ + I + H + L++
Sbjct: 1210 HAASNAIEALNLLEKENTY----QLAIV--DYNMPYMTGIDFIAHL-------RNDLKLD 1256
Query: 1013 SRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQK--- 1069
+ LP I L +++ E + + + KP+++ L + K +++K
Sbjct: 1257 AEQLPLILLHSSAQEEKLAKACEDLDVQFNINKPIKIDQLYRMLNQIQAPFKGVEEKPVD 1316
Query: 1070 -RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKH--GAIVTCVDCGRAAVDKLTPPHN 1126
K+ + + +L+ +DN VN+ +A+ L K A + V+ G+ AV H
Sbjct: 1317 EFKEKTFDDNFR---VLIAEDNPVNKFLAKTILTKAVPNAEIVEVENGQDAV-SFYKEHP 1372
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
D FMD+QMP M GF+A+ +IR E++ NEQ HVPI+A+TA
Sbjct: 1373 LDIIFMDIQMPIMSGFEASEEIRKYESDQNEQ----------------QHVPIIALTART 1416
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
++ E+C+ GMDDY++KP E + + + ++
Sbjct: 1417 VKGEKERCLDAGMDDYITKPVVFETIKAVIQEYLLN 1452
>gi|94263693|ref|ZP_01287501.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455892|gb|EAT06051.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1095
Score = 266 bits (680), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 190/625 (30%), Positives = 294/625 (47%), Gaps = 108/625 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + AE A AKS+FLA +SHEIRTPMN ++G+ + + T+L+ Q DY H+S
Sbjct: 318 ELNAARLEAEEATRAKSEFLANMSHEIRTPMNAIIGLSYLCLQTDLNNKQHDYLTKVHSS 377
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+ +IND+LD +K+E+G+LE E +PF L DV D++ S+ KA +K + + +
Sbjct: 378 AQSLLGIINDILDLSKVEAGKLEIEHIPFALQDVTDHLTSIIHVKAQEKQLHFHVETAID 437
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P ++GDP R QI+ NL GN+IKFT +G + + + LA+
Sbjct: 438 IPPFLVGDPLRLGQILINLCGNAIKFTS-QGQVMLQIVLAE------------------- 477
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
T EQ RI ++DTG G+ E
Sbjct: 478 -------------------------------QTEQTEQTARIHF--AIKDTGTGMTPEQI 504
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F F QADSST+R +GGTG+GL IS+ LVE MGGEI SEPG GSTF FT+ +
Sbjct: 505 SRLFQAFSQADSSTTRQFGGTGLGLVISKQLVETMGGEISVESEPGKGSTFMFTINLEKA 564
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+ + + Q VP S+ + +V+DD E+ +L V A S +A
Sbjct: 565 DPSRFE---QPAVPS-SDLGPRKIMVVDDNPTALELLESYLSDCNSTVDFAQSGAIALQK 620
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI------- 1019
L T S D++ +D LV+ + + G+E +R + +I
Sbjct: 621 LQQTGS------------DEEPYD----LVMLDL--RMPNFSGVETAREIRRILPHRPPW 662
Query: 1020 FLLATSISETD-RDELKSDGIVTLLTKPLRLSVLI----GCFQEDPESSKKLQQKRKKPS 1074
LL +S T+ L S +L KP L+ F + + +
Sbjct: 663 LLLFSSFGRTEMHPHLDSGLFDAILAKPFSQQQLLLAIHKIFHDSKTPTPDQPDSTGIAA 722
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
G L G +L+ +DN +N++VA L+ +G + G+ A+D L +D MD+
Sbjct: 723 DGRQLAGATLLLAEDNEINQQVACELLQPYGVTLAIAANGQQALDMLA-TDTYDGILMDI 781
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP MDG +AT IR N +PI+AMTA+ ++ E+
Sbjct: 782 QMPVMDGVEATELIRQ--------------------NPKYRDLPIIAMTANAFKSDQEKY 821
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+D ++KP +++ + R+
Sbjct: 822 LAAGMNDCITKPIRVKEMLATLGRW 846
>gi|332530052|ref|ZP_08406002.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC
19624]
gi|332040525|gb|EGI76901.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC
19624]
Length = 1320
Score = 266 bits (680), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 200/631 (31%), Positives = 302/631 (47%), Gaps = 125/631 (19%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + RA+ A AKS FLA +SHEIRTPMN ++G+ +L+ TEL Q DY + +
Sbjct: 532 ELRVARDRAQEAAQAKSDFLANMSHEIRTPMNAIIGLSHLLLKTELSQRQHDYLRKIQQA 591
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G+ L+ +IND+LD +KIE+G+L E F L L NV +L + KA+ KG+EL ++
Sbjct: 592 GQHLLGVINDILDLSKIEAGKLVIEHTEFQLEKALSNVANLIAEKAHAKGLELIFDIAPD 651
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP+ ++GD R QI+ N N++KFT+ R +V V+ +V E++ +
Sbjct: 652 VPQRLVGDSLRLGQILINYANNAVKFTE---------------RGEVTVQIRVRERTDHD 696
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V L V DTG+G+ +E Q
Sbjct: 697 V-----------------------------------------LLYCAVHDTGIGLSVEQQ 715
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT-- 904
R+F F QAD+ST+R YGGTG+GLSIS L E MGG +G S+ G GSTF FT
Sbjct: 716 KRLFQSFQQADNSTTREYGGTGLGLSISLELAERMGGTVGVSSQLGRGSTFWFTARLGIG 775
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
+G L P+ + RG LV+DD V + L+ + AV ++
Sbjct: 776 QGGTRELRPR--------GDLRGRTVLVVDDNKAACLVLKEMLESMSFAVTTVSN---GA 824
Query: 965 SYLSDTCSTSVLPQ-LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
+ S P A+V +D W K G+ + RR LE+ + PKI ++
Sbjct: 825 DAIEAVRKRSGQPDAYAVVFLD---W-KMPGM---DGAETARRIHALELP-DEPKIAMVT 876
Query: 1024 TSISETDRDELKSDGIVTLLTKPLRLSVL-----------------IGCFQEDPESSKKL 1066
E +++ G+ +L KP+ S+L I + P + L
Sbjct: 877 AFGREEVLHQIQDSGVGDVLIKPVSPSLLFDTAVRLLDDSAVREPVIPLLENTPSA---L 933
Query: 1067 QQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPH- 1125
+Q SL L +G ++LVV+DN +N++VA+ L G +V D G+ A++K+
Sbjct: 934 EQ-----SLASL-RGARLLVVEDNEINQQVAQELLTGAGFLVEIADNGQIAIEKIARAKP 987
Query: 1126 NFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTAD 1185
FD MD+QMP MDG AT ++R + +PI+AMTA+
Sbjct: 988 RFDLVLMDMQMPVMDGVTATRELRK--------------------TLSPADLPIVAMTAN 1027
Query: 1186 VIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
+Q E C+ GM D+V+KP E ++L+ A+
Sbjct: 1028 AMQHDRELCIASGMQDFVAKPIEPDELWRAL 1058
>gi|206580641|ref|YP_002238911.1| sensory box histidine kinase/response regulator [Klebsiella
pneumoniae 342]
gi|206569699|gb|ACI11475.1| sensory box histidine kinase/response regulator [Klebsiella
pneumoniae 342]
Length = 897
Score = 266 bits (680), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 199/609 (32%), Positives = 293/609 (48%), Gaps = 106/609 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A A+ AKS FLA +SHEIRTPMNG+LGM Q+ +DT L A Q +Y +S + L+ +I
Sbjct: 261 AREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTPLTAEQREYLSLVMSSAQSLLHII 320
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD ++IESG+++ + P + + +++ A++KGIEL + +S VPEV+I D
Sbjct: 321 NDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVPEVLIVD 380
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQI+TNL+GN++KFT +G + +++ ADD
Sbjct: 381 GPRLRQILTNLLGNALKFTH-QGEVLLAIAPADDE------------------------- 414
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
RW+ F+ + DTG+GI E Q IF F
Sbjct: 415 ----------SRWR----FR-------------------IRDTGIGIAPEKQKAIFEAFS 441
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSST+R YGGTG+GL+IS LV LMGGE+ S+PG GS F+FT+ EG L
Sbjct: 442 QADSSTTRRYGGTGLGLTISARLVSLMGGELMVESQPGAGSEFAFTLPL-EG----LHAA 496
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
P +S F R LV+DD S + L+++ + ++ A ++
Sbjct: 497 ASGSAP-LSRFNNQRVLVVDDNSTNLRLLDTMLRQMGLMPSCVDNAGEALRRAAEG---- 551
Query: 975 VLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
P L+L+D + D + + L L + R+ +I +L++ D +
Sbjct: 552 --PPWPLILLDAQMPDMDGVSLALELSALPEARQS---------QIIMLSSMSRHFDANM 600
Query: 1034 LKSDGIVTLLTKPLRL----SVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089
LK GI L KP+ V+ G P + +P G IL+ +D
Sbjct: 601 LKRIGIAHYLHKPVAQRELHQVIAGILLPTPVVATA-PAPVAEPVRDQ--TGLHILLAED 657
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
N+VN++VA L++ G V GR A+++ +D +DLQMPEMDG A IR
Sbjct: 658 NLVNQKVARRLLEQLGHRCEVVSNGREALERWRAA-CWDLLLIDLQMPEMDGETA---IR 713
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
L E +G H P +AMTA +Q E+C+ G D Y++KP
Sbjct: 714 LLREETPA--------------LGRQHQPAMAMTAHAMQGDRERCLAMGFDGYIAKPVSL 759
Query: 1210 EQLYTAVAR 1218
E L A+AR
Sbjct: 760 EALREAIAR 768
>gi|374813019|ref|ZP_09716756.1| multi-sensor hybrid histidine kinase [Treponema primitia ZAS-1]
Length = 734
Score = 266 bits (679), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 190/630 (30%), Positives = 300/630 (47%), Gaps = 117/630 (18%)
Query: 603 NDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA-Q 661
+D E+ + K AE A AKS FLA +SHEIRTPMN ++GM + ++ + + DY
Sbjct: 196 HDVEELAQAKEAAERASSAKSDFLANMSHEIRTPMNAIIGMTNIAKSSK-ELEKKDYCLG 254
Query: 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
N+ L+ +IND+LD +KIE+ + + + F +L V ++ K +K I
Sbjct: 255 KIENASTHLLGVINDILDMSKIEANKFDLSYTEFDFEKMLIRVTNVVEFKIEEKSQNFFI 314
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLE 781
+ + VPE ++ D R Q+I NL+ N+IKFT +KG+I V +H K+D KD
Sbjct: 315 HSDEDVPEFIVSDEQRLFQVIANLLSNAIKFTPEKGNITVDIH-------KIDEKD---- 363
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
G + + V DTG+G+
Sbjct: 364 --------------------------------------------GICTIQIEVSDTGIGV 379
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
E + ++F F+QADSS SR +GGTG+GL+IS+ +VE+M G I SE G G+TF F
Sbjct: 380 TEEQKAQLFNSFVQADSSISRKFGGTGLGLAISKRIVEMMDGRIWVESEYGKGATFKF-- 437
Query: 902 TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ 961
+ + ER + K + E + LV+DD ++ Y L +A +
Sbjct: 438 -YIQAERGK-ESKKSAVKKGLLEIDKINVLVVDDSE---DLREYFLS-------MARKIG 485
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG--GLEISRNLPKI 1019
C + D Q A LI++ G R G G+E++R + K
Sbjct: 486 FHCDVVEDG-------QAATKLIEE-------GRRYDMFFVDWRMPGVSGIELTRTIRKT 531
Query: 1020 -----FLLATSISETDR--DELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKR 1070
++ S E R +E K+ G+ + KPL S+L+ CF + P++ ++
Sbjct: 532 VGNKAIVIMISAVEWARIEEEAKASGVNGFIPKPLFPSLLVDCFNQYLSPDTGGAAEETE 591
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP-PHNFDA 1129
+ L L+GK+IL+ +D +NR + L+ +G + C + G V + P+N+D
Sbjct: 592 QSEDLH--LEGKRILLAEDVEINREIVIAILEPYGLTINCAENGVEVVKEFEAHPYNYDI 649
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
FMD+ MPEMDG++AT +IR L+ +I PI+AMTA+V
Sbjct: 650 IFMDVHMPEMDGYEATRRIRALDIPRAREI------------------PIIAMTANVFAE 691
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+CM GM+D+V KP + EQ+ TA+ ++
Sbjct: 692 DVEKCMAAGMNDHVGKPLDMEQVMTALKKY 721
>gi|290509876|ref|ZP_06549247.1| sensory box histidine kinase/response regulator [Klebsiella sp.
1_1_55]
gi|289779270|gb|EFD87267.1| sensory box histidine kinase/response regulator [Klebsiella sp.
1_1_55]
Length = 897
Score = 266 bits (679), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 199/609 (32%), Positives = 293/609 (48%), Gaps = 106/609 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A A+ AKS FLA +SHEIRTPMNG+LGM Q+ +DT L A Q +Y +S + L+ +I
Sbjct: 261 AREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTPLTAEQREYLSLVMSSAQSLLHII 320
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD ++IESG+++ + P + + +++ A++KGIEL + +S VPEV+I D
Sbjct: 321 NDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHMPAASEKGIELLVDISPAVPEVLIVD 380
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQI+TNL+GN++KFT +G + +++ ADD
Sbjct: 381 GPRLRQILTNLLGNALKFTH-QGEVLLAIAPADDE------------------------- 414
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
RW+ F+ + DTG+GI E Q IF F
Sbjct: 415 ----------SRWR----FR-------------------IRDTGIGIAPEKQKAIFEAFS 441
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSST+R YGGTG+GL+IS LV LMGGE+ S+PG GS F+FT+ EG L
Sbjct: 442 QADSSTTRRYGGTGLGLTISARLVSLMGGELMVESQPGAGSEFAFTLPL-EG----LHAA 496
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
P +S F R LV+DD S + L+++ + ++ A ++
Sbjct: 497 ASGSAP-LSRFNNQRVLVVDDNSTNLRLLDTMLRQMGLMPSCVDNAGEALRRAAEG---- 551
Query: 975 VLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
P L+L+D + D + + L L + R+ +I +L++ D +
Sbjct: 552 --PPWPLILLDAQMPDMDGVSLALELSALPEARQS---------QIIMLSSMSRHFDANM 600
Query: 1034 LKSDGIVTLLTKPLRL----SVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089
LK GI L KP+ V+ G P + +P G IL+ +D
Sbjct: 601 LKRIGIAHYLHKPVAQRELHQVIAGILLPTPVVATA-PAPVAEPVRDQ--TGLHILLAED 657
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
N+VN++VA L++ G V GR A+++ +D +DLQMPEMDG A IR
Sbjct: 658 NLVNQKVARRLLEQLGHRCEVVSNGREALERWRAA-CWDLLLIDLQMPEMDGETA---IR 713
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
L E +G H P +AMTA +Q E+C+ G D Y++KP
Sbjct: 714 LLREETPA--------------LGRQHQPAMAMTAHAMQGDRERCLAMGFDGYIAKPVSL 759
Query: 1210 EQLYTAVAR 1218
E L A+AR
Sbjct: 760 EALREAIAR 768
>gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 1313
Score = 266 bits (679), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 201/618 (32%), Positives = 293/618 (47%), Gaps = 106/618 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K A+ A AKS FLA++SHEIRTPMNGV+GM +LM+T+L Q D+ T SG+ L+
Sbjct: 785 KTEADEASRAKSDFLASMSHEIRTPMNGVIGMTSLLMETDLSPEQRDFVNTIRTSGEALL 844
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +KIESG+++ E +PF L L+ L LF+ +A+ K +ELA +++ VPE +
Sbjct: 845 TIINDILDFSKIESGKMDLEHLPFELATCLEESLDLFALQASAKHLELAYHIAPDVPEWI 904
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGD R RQI+ NLV N++KFT G I + V+ +
Sbjct: 905 IGDITRLRQIVVNLVNNAVKFT-SAGSIAI------------------------EVRRRP 939
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
V L FP L V DTG+GIP E R+F
Sbjct: 940 PTVPANLKRFP---------------------------LEFVVRDTGIGIPAERLDRLFK 972
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNS- 910
F Q DSST+R YGGTG+GL+I + L LMGG I S+ G GS+F FT+T E +
Sbjct: 973 AFSQVDSSTTRKYGGTGLGLAICQRLSILMGGGIRVESKVGEGSSFIFTITTEEAAAGAP 1032
Query: 911 -LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
+ P PD+ + +G L ++D + V R LE + A + +
Sbjct: 1033 LVAP------PDLDQLKGCPVLCVEDHPV---VQRRIAGLLE---PYGATCHFAANAFAG 1080
Query: 970 TCSTSVLPQ-LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
+ LP ALV+ID D + LE +++ LL +
Sbjct: 1081 AALAATLPTPPALVIIDGD---------------ETEGSSPLEALQSIKAPRLLMLPFGQ 1125
Query: 1029 TDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKPSLGHLLK--GKQI 1084
T T + KP + + + +P + + P L + I
Sbjct: 1126 TAPPPPADRQPFTSIFKPFKTTSFLHVVSALLNPATHTVIATDTTGPFTRRLAEEFPLDI 1185
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+ +DN VN++VA L++ G V G+ AV L H + MDLQMPEMDG +A
Sbjct: 1186 LLAEDNTVNQKVALRFLERLGYRADAVSNGQEAVTTLAARH-YHLVLMDLQMPEMDGLEA 1244
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
+ QIR + AS + I+A+TA+ +Q E+C++ GMDDY+S
Sbjct: 1245 SRQIR------KKVPASRQPK-------------IVALTANAMQGDRERCLEAGMDDYIS 1285
Query: 1205 KPFEDEQLYTAVARFFMS 1222
KP + ++ A+ R F S
Sbjct: 1286 KPVKLHEIEAAIRRLFAS 1303
>gi|220907616|ref|YP_002482927.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
gi|219864227|gb|ACL44566.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
Length = 887
Score = 266 bits (679), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 228/676 (33%), Positives = 321/676 (47%), Gaps = 114/676 (16%)
Query: 573 AINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHE 632
A+ A +G I L H+ + Q+ ++ K AEAA+ AK +FLA +SHE
Sbjct: 285 AVAAQVG---IALAQAHLLEQETRQREQLWQQNLALVAAKQAAEAANQAKGRFLAVMSHE 341
Query: 633 IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEF 692
IRTPMN V+GM +L+DT L Q DY +T H SG+ L+ LIND+LD +KIESG+LE E
Sbjct: 342 IRTPMNAVIGMTTLLLDTSLTPQQRDYVETIHGSGEALLCLINDILDFSKIESGKLELET 401
Query: 693 VPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKF 752
PF+L L+ + L +++A +KGIELA +S PE + GD R RQI+ NL+ N+IKF
Sbjct: 402 RPFNLRTCLEEAIDLLATRATEKGIELAYLISPPTPEQIQGDVIRLRQILVNLINNAIKF 461
Query: 753 TQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812
T + G + +SV A +V FP+ + E
Sbjct: 462 T-EAGEVVISVT-AREV-------------------------------FPLRSQLSGGEE 488
Query: 813 --FKMLDNTNTME-QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGI 869
F + T+ ++ + ++ VEDTG+GIP++ R+F PF Q DSS R YGGTG+
Sbjct: 489 PPFSVSAAYETLPYEMPQYEIQFAVEDTGIGIPIDRLDRLFRPFSQVDSSVRRHYGGTGL 548
Query: 870 GLSISRCLVELMGGE-----------IGFVSEPGT---------GSTFSFTVTFTEGERN 909
GL+IS+ L E MGG IG EP T GSTF FTV +
Sbjct: 549 GLAISKKLAETMGGRIWVSSRDETGAIGRAGEPPTGFTDVLLRQGSTFYFTVLVPALPQP 608
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
P R L++DD ++ + Q + + A L
Sbjct: 609 PAPPPPPGLAGK-------RLLIVDDNPTYRKILSLYSQFWGTLPYTFAAGSEALRRLQQ 661
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
P L +ID + D + GL L ++Q L + LP IFL TS E
Sbjct: 662 Q------PGFDLAIIDDRLADMD-GLSLVEQIRQ------LPQTATLPLIFLTNTSQRER 708
Query: 1030 DRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKK-PSLG--HLLKGK 1082
L+ +G++ LTKPLR S L+ +P ++ L+ P LG +LL+
Sbjct: 709 VASHLQ-NGLI--LTKPLRQSQLQDALLKLLSVEPSATAALENPPSSFPPLGSQNLLR-- 763
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
IL+ +DN VN++VA LK+ G G ++ L ++D MD+QMPEMDG
Sbjct: 764 -ILLAEDNAVNQKVALHLLKRLGYGADVAKNGIQVLEALR-QQSYDVILMDVQMPEMDGL 821
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
AT QIR GL I+AMTA+ +Q E C++ GMDDY
Sbjct: 822 TATQQIRR---------------------SGLPQPRIIAMTANAVQGDREACLEAGMDDY 860
Query: 1203 VSKPFEDEQLYTAVAR 1218
VSKP L A+ +
Sbjct: 861 VSKPIRLPDLVEALQK 876
>gi|16329648|ref|NP_440376.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|383321389|ref|YP_005382242.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383324559|ref|YP_005385412.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383490443|ref|YP_005408119.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384435709|ref|YP_005650433.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803]
gi|451813808|ref|YP_007450260.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|1652132|dbj|BAA17056.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|339272741|dbj|BAK49228.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803]
gi|359270708|dbj|BAL28227.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359273879|dbj|BAL31397.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277049|dbj|BAL34566.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407957531|dbj|BAM50771.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|451779777|gb|AGF50746.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
Length = 1462
Score = 266 bits (679), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 194/618 (31%), Positives = 299/618 (48%), Gaps = 108/618 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AEAA+ AK +FLA +SHEIRTPMNGV+GM ++L+ T+L+ QLDY QT SG+ L+++I
Sbjct: 771 AEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQSGETLLTII 830
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+ +L E F L +++ VL +F A K +EL + + P ++GD
Sbjct: 831 NDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGD 890
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQI++NL+GN++KFT+ KG + ++V K + + + +
Sbjct: 891 QVRLRQILSNLIGNALKFTE-KGEVVLTV------------KGEPFDPA---------ES 928
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
Y+T+ P ++ + DTG+GIPL+ Q R+F F
Sbjct: 929 YHTILNLPHPSH----------------------RICFNLRDTGIGIPLDRQDRLFKSFS 966
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
Q DSST+R YGGTG+GL IS+ L ++MGG + SEPG GS F F + T + +L
Sbjct: 967 QVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCI-LTTAQAPALAE- 1024
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
V + +G + L++DD + + Q + H S + A + + C
Sbjct: 1025 ----ADSVQQMKGKQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFA-RC--- 1076
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
P L ++D + + + G+ L + L+Q ++LP I L + ++ DEL
Sbjct: 1077 --PDLDAAILDLQMPNMD-GITLAHHLRQ------FAQGKDLPIILLSSGLVAGA--DEL 1125
Query: 1035 KSDGIVTLLTKPLRLSV----LIGCFQ---------------EDPESSKKLQQKRKKPSL 1075
T+L KP+R S+ L+ FQ + PE + +
Sbjct: 1126 SV--FQTVLNKPVRQSLIFDSLVNIFQGSIGLADYAPQFDQLDLPEFVPDGDGLPTEDNA 1183
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
L QIL+ +DN+VN++VA L G V + G+ +D L +D MD+Q
Sbjct: 1184 TSLQPALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKF-YDLVLMDMQ 1242
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP-ILAMTADVIQASNEQC 1194
MP MDG A IR + L P I+AMTA+ + ++C
Sbjct: 1243 MPVMDGITACRHIRQ--------------------TLPLERQPRIVAMTANAMPGDRQEC 1282
Query: 1195 MKCGMDDYVSKPFEDEQL 1212
+ GMD Y+SKP QL
Sbjct: 1283 LDAGMDGYISKPISINQL 1300
>gi|400760181|ref|YP_006589784.1| putative two-component sensor histidine kinase/response regulator
hybrid protein [Phaeobacter gallaeciensis 2.10]
gi|398655653|gb|AFO89622.1| putative two-component sensor histidine kinase/response regulator
hybrid protein [Phaeobacter gallaeciensis 2.10]
Length = 759
Score = 266 bits (679), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 203/670 (30%), Positives = 317/670 (47%), Gaps = 126/670 (18%)
Query: 569 VPW------TAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAK 622
+PW A+N S+GV+ T ++ + + + E + A+ A+ AK
Sbjct: 194 LPWFASREFRALNFSVGVLEDTF-------------SERDEREYALEEARKAADIANRAK 240
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S+FLA +SHEIRTPMNGV+GM +++++T+LD Q YA+T SG L+++IND+L+ +K
Sbjct: 241 SEFLANMSHEIRTPMNGVIGMAELILETDLDEDQTMYAETISKSGSALLTIINDILNFSK 300
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
IE+G++E E PF+L +++V++L S KA +K +E+ + +PE GD GR RQI+
Sbjct: 301 IEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVTLRYDPSLPECYEGDVGRIRQIL 360
Query: 743 TNLVGNSIKFTQDKGHIFVSVH-LADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
TN+ GN++KFT KG++++ V DD R+ + + V +T +G
Sbjct: 361 TNVAGNAVKFT-GKGYVYIEVSGETDDDRTALRI-----------------SVTDTGAGI 402
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
P DR LD RIF F QAD + +
Sbjct: 403 P-DDR---------LD------------------------------RIFNAFEQADGAAT 422
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R Y GTG+GL+IS L+ELMGG I SE G GS F+ + + P + D
Sbjct: 423 RNYEGTGLGLAISTRLLELMGGRISVQSELGKGSVFTIDLPL------RIRPNQPKRTQD 476
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD-----TCSTSVL 976
V +F+GLRALV+DD + + L + A S A L D T +L
Sbjct: 477 VRDFKGLRALVVDDLELNRIILTERLATWGVQSVAAGSAHQALELLLDSRHDGTHYDVIL 536
Query: 977 PQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKS 1036
+ +D + I + Y R+LP I +L++ + DR+ +
Sbjct: 537 QDFQMPGMDGKELAERIRDIPEY--------------RDLP-IVILSSVENTIDREAREH 581
Query: 1037 DGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG---HLLKGKQILVVDDNMVN 1093
G + KPLR + L E++ + + + P G ++ ++L+ +DN N
Sbjct: 582 LGHCEVALKPLRAAQLQSVMSRVLETATE-EAPQAVPPQGVETSVVPEVKLLLAEDNRTN 640
Query: 1094 RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLEN 1153
+ V LK V G AV + H+ D MD+ MP DG AT +IR LE
Sbjct: 641 QLVVSRMLKAAPIEVLIAANGEEAV-TMFQEHHPDIVLMDMMMPVKDGIDATAEIRQLEK 699
Query: 1154 EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLY 1213
+ GL P++A+TA+ +Q+ E+C+ GMDD++SKP + L
Sbjct: 700 -----------------DNGLGRCPVVALTANALQSHREECLAAGMDDFLSKPINKKALL 742
Query: 1214 TAVARFFMSG 1223
AV ++ G
Sbjct: 743 GAVGKWVDCG 752
>gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1407
Score = 266 bits (679), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 193/630 (30%), Positives = 303/630 (48%), Gaps = 119/630 (18%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++ + AE KS FLA +SHEIRTPMNG++GM + ++T+L Q DY + SG
Sbjct: 668 LINARTLAEETSRMKSDFLANMSHEIRTPMNGIIGMSHLALNTDLTPRQRDYLKKIQQSG 727
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
++L+ +IND+LD +KIE+G+L E F L + L +V++L K +KG+EL + ++ V
Sbjct: 728 QNLLRIINDILDISKIEAGKLSIEHSEFELENTLADVVALIGEKTTEKGLELILDIASDV 787
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P ++GD R Q++ N N++KFT+ +G I ++V L + RS+ D+VL
Sbjct: 788 PVNLLGDSLRLGQVLLNYASNALKFTE-QGEIVIAVRLRE--RSE----DQVL------- 833
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
L V DTG+G+ E
Sbjct: 834 ------------------------------------------LYFEVRDTGIGLSSEQIS 851
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R+FTPF Q D+ST+R YGGTG+GL+I R L +LMGGE G S G GSTF FT G
Sbjct: 852 RLFTPFTQGDASTTRRYGGTGLGLAICRQLADLMGGEAGVNSVEGQGSTFWFTARLGTG- 910
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
K + +P V++ RG LV+DD +V L + +V VANS
Sbjct: 911 ----GIKKRTLLP-VADLRGGHVLVVDDNDNARQVMNEMLDGMSFSVDVANS-------- 957
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS-- 1025
+ + + L +D + L +M G++ + + L A
Sbjct: 958 ----AIEAITAIELADRQRDPYK------LVFMDWHMPTMNGIDACNKIQSLPLTAPPHL 1007
Query: 1026 --ISETDRDEL----KSDGIVTLLTKPLRLSVL-------IGCFQEDPESSKKLQQKRKK 1072
++ RDE+ ++ GI +L KP+ S L IG +ED S Q +
Sbjct: 1008 VLVTAYGRDEVFHNAENAGIRDVLVKPVTASTLFDTAIRVIGAEREDLHISCVPTQPAED 1067
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
+ + G +IL+V+DN N+++A L++ V + G A++ L +N+D M
Sbjct: 1068 M---NTISGARILLVEDNEFNQQIAMELLQQMHLAVDLAENGAEALN-LLEKNNYDLVLM 1123
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP MDG AT ++R +P++AMTA+V+QA +
Sbjct: 1124 DMQMPVMDGISATLELRR--------------------QARFAELPVVAMTANVLQADRQ 1163
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+C+ GM+D++SKP E E L+ + ++ +
Sbjct: 1164 RCLDAGMNDFLSKPIEPELLWQTLLKWITA 1193
>gi|392544011|ref|ZP_10291148.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas piscicida JCM
20779]
Length = 1243
Score = 266 bits (679), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 197/625 (31%), Positives = 302/625 (48%), Gaps = 117/625 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++E K A+ + AKS+FLA +SHEIRTPMN ++GM + + TEL+A Q DY +
Sbjct: 487 ELIEAKDLAQNSAKAKSEFLANMSHEIRTPMNAIIGMSHLALATELNAKQHDYVSKIDTA 546
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K L+ LIND+LD +KIE+G++E E+ F +LDNV ++ S KA +K +EL + +
Sbjct: 547 AKQLLRLINDILDFSKIEAGKIELEYQAFSTEKLLDNVATIVSVKAQEKQLELVFDIDSQ 606
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP VIGD R Q++ NL GN++KFT + G + + V L
Sbjct: 607 VPYCVIGDQFRISQVLINLAGNAVKFT-ETGEVVIRVAL--------------------- 644
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
N + L +IK +V+D+G+G+ Q
Sbjct: 645 --------------------------------VNVEKGLAKIKF--SVKDSGIGMNKRQQ 670
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+F F QAD+S +R YGGTG+GL+IS+ LV+LMGGEI SE GS F FT+
Sbjct: 671 KNLFQSFSQADNSITRKYGGTGLGLTISQQLVKLMGGEIYVESEENVGSEFYFTLEMEVS 730
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+ S ++ ++S A +IDD +V L M V CSY
Sbjct: 731 DELSQAKMASTHLSELS------ATIIDDNQHALDVLSGMLTNFGMQV---------CSY 775
Query: 967 ------LSDTCSTSVLPQLALVLIDKDVWD--KEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
L+ T LP L+ +D W K G+ + L+ Q +++S++ K
Sbjct: 776 LDPHKALNQFVLTQDLPD--LIFVD---WHMPKLDGIEMITKLQSQ-----VDVSQS--K 823
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ----EDPESSKKLQQKRKKPS 1074
L+ E + + ++ + +L KP+ S L+ Q + PE + +K + S
Sbjct: 824 FILVTAYGRELNLSDSQASLVDGVLLKPINPSNLVDVIQNAVFDSPEVRTTITKKEQTIS 883
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
L G ILV +D VN+ +A L GA V D G+ A++++ H D MD+
Sbjct: 884 -KQALNGLSILVAEDQPVNQEIAVEILSSFGAQVAVADNGQEAIEQVHSKH-IDIVLMDM 941
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP MDG AT +R +E + N +PILAMTA+ ++ + C
Sbjct: 942 QMPVMDGITATQNLR-IEFDKNT-------------------LPILAMTANAMEEDIQTC 981
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+D+V+KP + EQL ++ ++
Sbjct: 982 IDAGMNDHVTKPIDVEQLVKSILKY 1006
>gi|152985475|ref|YP_001347049.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PA7]
gi|150960633|gb|ABR82658.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PA7]
Length = 918
Score = 265 bits (678), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 203/661 (30%), Positives = 316/661 (47%), Gaps = 128/661 (19%)
Query: 574 INASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEI 633
+ + V ++TL +G +RI ++ + + +A + AKS+FLA +SHEI
Sbjct: 365 VKVGMTVELVTLSIG-----LADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEI 419
Query: 634 RTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFV 693
RTP+NGVLGMLQ+L DT LD Q +T +SG L+S+IND+LD A+IESG+L+ E +
Sbjct: 420 RTPLNGVLGMLQLLRDTPLDRGQAACVETIASSGNALMSVINDILDYARIESGKLQLERI 479
Query: 694 PFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFT 753
F L ++L + L+LF ++A +K + L + + VP + GDP R RQ++TNL+GN++KFT
Sbjct: 480 DFDLEELLSDTLALFGAQAREKRLRLHLGLDRGVPRRLNGDPTRLRQVLTNLLGNALKFT 539
Query: 754 QDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENF 813
+ GH+ + VQ + D+
Sbjct: 540 AE-GHVAL------------------------RVQRRFDEA------------------- 555
Query: 814 KMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSI 873
GR +LL +V D+G+GI +AQ +F F QADSST+R YGG+G+GL+I
Sbjct: 556 ------------GRERLLYSVSDSGIGISAQAQATLFESFSQADSSTTRRYGGSGLGLAI 603
Query: 874 SRCLVELMGGEIGFVSEPGTGSTFSFTVTFT----EGERNSLDPKWQQYVPDVSEFRGLR 929
SR LV++MGG I SEPG G+ FS + + G+ + L V +G
Sbjct: 604 SRELVQMMGGRIEVSSEPGKGTRFSVDLPLSPALDSGDADEL----------VHLLQGRP 653
Query: 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVW 989
L+ + ++ + + L+R + V + +YL D + +L A +W
Sbjct: 654 VLLASEDNLTLDCLQATLERWGLRVERCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIW 713
Query: 990 DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTL-LTKPLR 1048
L+ L+Q +R I LL + D +G+ L L +P+
Sbjct: 714 LDS----LYAQLEQGQR------------ILLLCP--PQHCHDLPPHEGLRLLALAQPVT 755
Query: 1049 LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQ-------ILVVDDNMVNRRVAEGAL 1101
++ L E L ++R++ G+ ++ ILV +DN VN+ V G L
Sbjct: 756 VNALRAALLE-------LYRERRRQLRGNSEAPREPERDTPCILVAEDNPVNQLVVRGFL 808
Query: 1102 KKHGAIVTCVDCGRAAVDK-LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160
K G V GR A+D+ L P+ MD +MPEMDGF+AT IR E +
Sbjct: 809 AKRGYAVRLAGNGRLALDEYLRDPNGIQLILMDGEMPEMDGFEATRLIRREERARD---- 864
Query: 1161 SGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
W VPI+A+TA ++ + ++ GMD Y+ KP + +LY + R
Sbjct: 865 --------------WPRVPIVALTAHILDEHRQAGIEAGMDAYLGKPVDRTELYATLERL 910
Query: 1220 F 1220
Sbjct: 911 L 911
>gi|89900557|ref|YP_523028.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens T118]
gi|89345294|gb|ABD69497.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens T118]
Length = 1033
Score = 265 bits (678), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 203/623 (32%), Positives = 293/623 (47%), Gaps = 103/623 (16%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
R + D E K A+AA +AKSQFLA +SHEIRTPMN VLG+ +M+++++L Q
Sbjct: 287 RYVAIRADITERKRAKEAAQAATLAKSQFLANMSHEIRTPMNAVLGLTRMVLESDLKPEQ 346
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
+ SG+ L+ +IND+LD ++IE+GRL E +P + VL V LFS++A +KG
Sbjct: 347 REQLIKVSKSGRALVRIINDILDFSRIEAGRLAIERIPLRVEAVLLEVADLFSAQAEEKG 406
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
+EL + + P VIGDP R Q++ NLVGN+IKFT D G I + V
Sbjct: 407 LELFLDIEPETPLQVIGDPLRLTQVLNNLVGNAIKFT-DHGEIHIGVR------------ 453
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
V H D + L + V D
Sbjct: 454 ----------VAHYGDAT---------------------------------LTLCINVRD 470
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+G+ E +F F QADSST+R YGG+G+GL+I++ LVELMGG+I S G G+
Sbjct: 471 TGIGMAPEQIGVLFQSFTQADSSTTRNYGGSGLGLTIAKKLVELMGGQITLDSAVGQGTN 530
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
SF+V G + D+ + G R LV+DD++ ++ LQ M
Sbjct: 531 VSFSVAV--GMAPDDFRRVTHMGQDLQQMHGKRVLVVDDQATSRQILSRLLQAWGMEATE 588
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE--IGLVLHYMLKQQRRKGGLEISR 1014
A S A + +++ VL+D W GL + LK Q GL
Sbjct: 589 AESGPQALARVAEANRAG--RPFHAVLLD---WRMPGMSGLEVATALKAQDEAKGLPT-- 641
Query: 1015 NLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQED----PESSKKLQQK 1069
P L+ T+ ++ E ++ I +LTKP+ S L + P++S +L +
Sbjct: 642 --PLQVLMVTAYDKQSLLQEPEAANIDGVLTKPVVPSYLFDALLQGEPRHPDASDELVAQ 699
Query: 1070 RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
R G ++L+V+DN +N+ VA L+K G VT G AV+ L FD
Sbjct: 700 R--------FDGVRVLLVEDNDLNQEVASSFLRKRGVSVTVAWHGGEAVE-LIQHQQFDL 750
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MDL MP M G +A +IR L N +PI+AMTA V++
Sbjct: 751 VLMDLHMPVMGGIEAARRIRELPQGKN--------------------LPIVAMTAAVMEE 790
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQL 1212
+C GM+ +V+KP E E L
Sbjct: 791 DRARCRAAGMNGFVAKPVEPEDL 813
>gi|443477298|ref|ZP_21067155.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
gi|443017594|gb|ELS32000.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
Length = 834
Score = 265 bits (678), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 204/649 (31%), Positives = 312/649 (48%), Gaps = 97/649 (14%)
Query: 588 GHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
H F I +++ E++ + AE ++ AKS FLA +SHEIRTPMNGVLGM +L
Sbjct: 260 NHDFVYVGRDITELKRKEQELLAARQFAEQSNRAKSIFLANMSHEIRTPMNGVLGMTDLL 319
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
+ T LD Q D+ + SG L+SLIN +LD +K+E G L+ E +PF+L ++ +L L
Sbjct: 320 LSTTLDDRQQDFVENIRLSGNLLLSLINRILDLSKLEEGELQLESLPFNLEQCIEEILEL 379
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
F +A+ + +E+ + +P +++ D RFRQI+ NL+GN+IKFT + G I V
Sbjct: 380 FGLQAHNQSLEINASFEEDLPRLLMADTVRFRQIMMNLIGNAIKFTSE-GEIVVR----- 433
Query: 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR 827
++R + +EN K L+ + +
Sbjct: 434 ------------------------------------IERDRDFENKKSLEQASP----SQ 453
Query: 828 IKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF 887
I L +V DTG+GI Q ++F PF Q D+ST+R +GGTG+GL+ISR LVELM GEIG
Sbjct: 454 IYLRFSVIDTGIGIHPSNQDKLFKPFSQVDTSTNRRFGGTGLGLAISRQLVELMQGEIGI 513
Query: 888 VS--EPGTGSTFSFTVTF---TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEV 942
S + G+ F F + F T E +SL V D LV+D +
Sbjct: 514 SSPVDNDRGTCFWFVLPFTLQTNQESSSL-------VYDRQSLSDRHILVVDANQYARKT 566
Query: 943 TRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL--VLIDKDVWDKEIGLVLHYM 1000
RY+L + +H A+S+ A +YL + + + VLID W L
Sbjct: 567 IRYYLTKFGANIHEASSLPEAIAYLDHGQNQNHNNNHNIDAVLID---W----RLTNFNG 619
Query: 1001 LKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR-------LSVLI 1053
+ R+ E NLP I LL T+ + + G +TKP + L + +
Sbjct: 620 TEAIRQIHSKEKFINLPIIALL-TANRQGETQTALDQGFCGYVTKPFKKQRLLKALFLAL 678
Query: 1054 GCFQEDPE-----SSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIV 1108
G +P SS ++ +++ L L+ +IL+ +DN+ N++V L + G
Sbjct: 679 GLNIPNPSIPTTASSISSRENQEEAILMEKLRSLRILLAEDNITNQKVTLAYLSQLGIQS 738
Query: 1109 TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEM 1168
+ G + +L ++D MD QMP +DG+ T IR LE IN+
Sbjct: 739 DLAENGEQVL-QLIQTKSYDIILMDCQMPVLDGYDTTEAIRRLE-AINQTPKP------- 789
Query: 1169 FGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
+ I+AMTA+ ++C+ GMDDY+SKP +QL A+A
Sbjct: 790 --------ILIIAMTANAFTEDRDRCLAIGMDDYLSKPIRKQQLKEALA 830
>gi|351728725|ref|ZP_08946416.1| hypothetical protein AradN_03058 [Acidovorax radicis N35]
Length = 1020
Score = 265 bits (678), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 199/621 (32%), Positives = 295/621 (47%), Gaps = 112/621 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ +A+AE A KS FLA +SHEIRTPMN V+GM + + TEL Q DY Q S
Sbjct: 254 ELVVAQAKAEDASRMKSDFLANMSHEIRTPMNAVIGMSHLALATELTVRQRDYIQKIQRS 313
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G+ L+ LIND+LD +KIE+G+LE E V F LH VLDNV +L K KG+EL V
Sbjct: 314 GQHLLGLINDILDFSKIEAGKLEVEVVDFDLHGVLDNVANLLGEKCASKGLELMFDVDSH 373
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +L G+ ++ G I V+
Sbjct: 374 LP--------------ADLRGDPLRL----GQILVN------------------------ 391
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ ++ V T G +V ++ + + + L V+DTG+G+ E Q
Sbjct: 392 --YANNAVKFTDEGEIIVRVREAARDAQ------------GVLLRFEVQDTGIGLTDEQQ 437
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F F QAD+ST+R YGGTG+GL+IS+ L LMGG++G S PG GSTF FT
Sbjct: 438 SRLFRSFEQADTSTTRKYGGTGLGLAISKKLASLMGGDVGVQSAPGRGSTFWFTA----- 492
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
R L Q+ + + RG R LV+DD ++ L + +V +A+S A
Sbjct: 493 -RLGLGASTQRPLLPEPDLRGRRVLVVDDSEQARQILAELLSSMSFSVTLASSGAQAVD- 550
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL------PKIF 1020
L+ + P + +D W K G+ G E +R L P+
Sbjct: 551 LARAADQAGRP-CEIAFLD---W-KMPGM------------DGFETARQLAQLPHPPRPV 593
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK---KPSLGH 1077
++ + +EL GI +LTKP+ S L ++++ R+ P
Sbjct: 594 IVTAHGRDDVLNELTRSGIGLMLTKPVNPSQLFDAAMRALGGAQRVDDGRRLPVPPRGAE 653
Query: 1078 L--LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
L ++G ++L+VDDN +N++V L G +V D G+AA+D L +D MD+Q
Sbjct: 654 LASIRGARVLLVDDNDLNQQVGRELLTSAGLVVDVADNGQAALDMLAR-GTYDIVLMDMQ 712
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP MDG AT RHL N +P+LAMTA+ + + EQC+
Sbjct: 713 MPVMDGLTAT---RHLRQ-----------------NPTWARLPVLAMTANAMSSDREQCL 752
Query: 1196 KCGMDDYVSKPFEDEQLYTAV 1216
GM+ +++KP + E L+ A+
Sbjct: 753 DAGMNGHIAKPIDPEALFAAL 773
>gi|288941216|ref|YP_003443456.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
gi|288896588|gb|ADC62424.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
Length = 1169
Score = 265 bits (678), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 236/721 (32%), Positives = 334/721 (46%), Gaps = 135/721 (18%)
Query: 530 INMYGPDVTDTGL-LR--VSNLDFGDP----SRKHEMHCRFKQKPPVPWT--AINASIGV 580
I++ PD T TG LR + NL P S +E CR ++ + WT AI + G
Sbjct: 318 IDILVPDQTSTGTDLRGLIENL-LAHPEDYRSNINENVCRDGRRVWMSWTNQAIRDAHGA 376
Query: 581 VVITLLVGHIFHA------AINRI-AQVENDYHE-MMELKARAEAA---DVAKSQFLATV 629
V L VG A A+ R+ A +E E EL+A E A A+S+FLA +
Sbjct: 377 VSEILSVGSDVTARLQAEEAVRRLNADLEQRVTERTAELRAAREQALRLAQARSEFLANM 436
Query: 630 SHEIRTPMNGVLGMLQMLMDTE-LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRL 688
SHEIRTPMN VLG+ +L E L D A+ ++SG+ L+ +IND+LD +KIESG++
Sbjct: 437 SHEIRTPMNAVLGLAYLLERQENLPEEACDLARKIYHSGQSLLGIINDILDVSKIESGKI 496
Query: 689 EPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGN 748
E F L VLDN+ ++ ++ A K + LAI ++GDP R QI+ NL N
Sbjct: 497 LIEQTRFQLSQVLDNLATIMTTAARGKDLALAIVPPRDCDWPLLGDPLRLGQILINLTNN 556
Query: 749 SIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWK 808
+IKFT D G V+E + V+ + +
Sbjct: 557 AIKFT-DSG---------------------VVEVRITPVESSASNLV------------- 581
Query: 809 SWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTG 868
+ TV DTG+GI E Q R+F PFMQAD+ST+R +GG+G
Sbjct: 582 ---------------------MRFTVRDTGIGIDAETQARLFQPFMQADASTTRRFGGSG 620
Query: 869 IGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGL 928
+GL ISR LVELMGG +G S PG GSTF F V E ++ PD R L
Sbjct: 621 LGLMISRQLVELMGGRLGVESAPGVGSTFWFEVPLGRTEPDA---------PDRPRARPL 671
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVL--PQLALVLIDK 986
+ L+ DD + + L + A S+ + L + S L P A VL+D
Sbjct: 672 QVLISDDHPCVRDALWATVSALGWS---ATSVDSRDAVLDAVLNHSFLQGPD-AAVLLD- 726
Query: 987 DVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTK 1045
W E GL + Q L SR P +FLL + ++ R D I +L K
Sbjct: 727 --WGPERDGLATAQAICQ-----ALPASRR-PLLFLLTQAPADQIRQRPDGDIIEAVLAK 778
Query: 1046 PLRLSVLIGCFQEDPESSKKL------QQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
PL + L + ++L + R++P L G+++LVVDD+ +NR VA
Sbjct: 779 PLTPTPLYDAVAK--ARGRRLGKIETPARVRRQP---RRLAGRRLLVVDDSEINREVARR 833
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTP-PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ 1158
GA +T + G+ A+D L P D MD+QMP MDG +AT +IR +
Sbjct: 834 IFSDEGATITLANDGQQALDWLQAHPDAVDLVLMDVQMPIMDGHEATRRIRQIPE----- 888
Query: 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
L +P++A+TA + + + GMDD++ KPFE EQ T + R
Sbjct: 889 ---------------LSRLPVVALTAGALHSQEVLAQEAGMDDFIPKPFEVEQAVTVIRR 933
Query: 1219 F 1219
Sbjct: 934 L 934
>gi|163760024|ref|ZP_02167108.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
gi|162282982|gb|EDQ33269.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
Length = 848
Score = 265 bits (678), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 204/664 (30%), Positives = 306/664 (46%), Gaps = 152/664 (22%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+A+AAD AKS+FLAT+SHEIRTPMNGVLGM ++L T+LD Q + SG L+ +
Sbjct: 270 KAKAADRAKSEFLATMSHEIRTPMNGVLGMAELLTRTDLDTRQRTFTDVILKSGNALLEI 329
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IND+LD +KI++G++ PF L D ++V +L SS+ +K IELA+ ++ +P+ +IG
Sbjct: 330 INDILDFSKIDAGQMVLAPKPFSLVDTAEDVATLMSSRVVEKDIELAVRIAPGLPDQLIG 389
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
DPGR RQI+TNLVGN++KFT+ +GH+ V ++
Sbjct: 390 DPGRVRQILTNLVGNAVKFTE-QGHVMVEIN----------------------------- 419
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
W++ + D + R+ L ++V DTG+GIP + +F F
Sbjct: 420 ----------------WKDVEPEDGEGASSR--RLALSISVSDTGIGIPPDKIDAVFDKF 461
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT----EGERN 909
Q D S++R + GTG+GL+I+ LVELMGG+I S G GSTFSFTV E E
Sbjct: 462 SQVDGSSTRKHEGTGLGLAIATRLVELMGGQIKLESTVGEGSTFSFTVEMDVYGGETETK 521
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
L + G R LVIDD +I + ++ S ++ + L
Sbjct: 522 GLPAEG---------LEGSRVLVIDDNAINRMILTEQMRGWGFDCVAVESGEVGINLLRH 572
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL---PKI----FLL 1022
S + IG+ L + Q G E++R + P I L+
Sbjct: 573 ARS-----------------NLGIGIDLLVLDFQMPGMTGGEVARAIRADPLIADTQILV 615
Query: 1023 ATSISETDRDE-LKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS------- 1074
+SI + D+ E L S + L KP+R + L Q + K Q+ R +P+
Sbjct: 616 LSSIDQADQLEMLDSLCVFAQLVKPVRTAQLRQTVQAALRQAVKSQESRGRPAPAQANGA 675
Query: 1075 -----------------------------------LGHLLKGKQILVVDDNMVNRRVAEG 1099
L + +LV +DN +N+ V +
Sbjct: 676 AFDATEATSVATTQAARSEGPMQPVSNPVLADAPPLSMQREEPLVLVAEDNQINQIVFQQ 735
Query: 1100 ALKKHGAIVTCVDCGRAAVDK---LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEIN 1156
+L+ G GR AV K L P D MD+ MPE++G +AT +IR +E
Sbjct: 736 SLQGMGVNHELAINGREAVTKWSELRP----DIVLMDVSMPELNGLEATAEIRAIE---- 787
Query: 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
GL PI+A+TA ++ ++C+ GMDDY+SKP E+L +
Sbjct: 788 -------------ARDGLAPTPIIAVTAHTLKGDEDRCLAAGMDDYMSKPISPEKLAAMI 834
Query: 1217 ARFF 1220
R+
Sbjct: 835 ERWL 838
>gi|406880450|gb|EKD28803.1| hypothetical protein ACD_79C00201G0011, partial [uncultured
bacterium]
Length = 749
Score = 265 bits (678), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 306/621 (49%), Gaps = 111/621 (17%)
Query: 616 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIN 675
E A+ KS+FLA +SHEIRTPMNG++GM+ + +DT+L Q D+ T NS L+ +IN
Sbjct: 217 ENANRVKSEFLANMSHEIRTPMNGIIGMITLALDTKLTDEQYDFLSTVKNSAYSLLGVIN 276
Query: 676 DVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDP 735
D+LD +K+E G+++ + + F+L + ++ V+ + +A++K IELA S V +++GD
Sbjct: 277 DILDFSKMEVGKMQIDEIDFNLRNTIEGVVETVALQASEKKIELACMFSHEVAALLVGDA 336
Query: 736 GRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVY 795
R RQI+ NL N+IKFT KG + + V L
Sbjct: 337 ARIRQILLNLASNAIKFTP-KGEVVIRVEL------------------------------ 365
Query: 796 NTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855
L TN M + L +V DTG+GI + +F F Q
Sbjct: 366 --------------------LSETNDMANI-----LFSVTDTGIGISEDKLGILFNEFSQ 400
Query: 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKW 915
D ST+R YGGTG+GL+IS+ LV +M GEIG S+PG GS F F + + L+P
Sbjct: 401 VDGSTTRIYGGTGLGLAISKKLVLMMNGEIGVESKPGHGSKFWFKLPL----KKQLNP-- 454
Query: 916 QQYVPDVSEF--RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
P+ F +G+R L+ DD + RY L++ M H +S
Sbjct: 455 -LPFPEKKSFDLKGMRLLITDDN----KTNRYILEK--MLEH------YGVRSVSVDSGV 501
Query: 974 SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI----FLLATSI-SE 1028
+ + +L +I+ D + ++L + K I +N P+I ++ TS+ +
Sbjct: 502 AAISELKKAIIENDPFKL---MLLDMQMPGMDGKHTTVIVKNTPEIKDTVIIILTSLGNR 558
Query: 1029 TDRDELKSDGIVTLLTKPLRLSVLIGCF-----QEDPESSKKLQQKRKKPSLGHL-LKGK 1082
D ++ G L KP++ S+L+ + D E +Q K ++ L +
Sbjct: 559 GDLADISKIGCAGYLIKPVKESLLMDTIGTVLSRNDTEYISVRRQIVTKHTVEDLKCQNI 618
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
QIL+ +DN +N++VA+ L+K G V V+ GR AV+ + +D MD+QMPE+DG
Sbjct: 619 QILLAEDNSINQKVAKNILQKSGFQQVDVVENGRLAVEA-SEKKVYDIILMDIQMPELDG 677
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
AT +IR E + H I+AMTA ++ +E+C++ GMDD
Sbjct: 678 ISATNEIRLREKDQGR------------------HTTIIAMTAHALKGDSERCLQAGMDD 719
Query: 1202 YVSKPFEDEQLYTAVARFFMS 1222
Y+SKP E +++ +A++ S
Sbjct: 720 YLSKPIEPQEMLKKIAKWVKS 740
>gi|409994119|ref|ZP_11277239.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
gi|291570461|dbj|BAI92733.1| two-component hybrid sensor and regulator [Arthrospira platensis
NIES-39]
gi|409935032|gb|EKN76576.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
Length = 1351
Score = 265 bits (677), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 196/632 (31%), Positives = 304/632 (48%), Gaps = 106/632 (16%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ E + A AA AKS+FLAT+SHEIRTPMN V+GM +L+DT L Q D+ +T +
Sbjct: 654 QELSEARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPLSLVQQDFVETIRS 713
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+SLIND+LD +KIESG+L+ E PF L L+ L L ++KA K +EL ++
Sbjct: 714 SSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLLATKAASKSLELGYFIDA 773
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
P V+GD R RQI+ NL+ N++KFT +G + VSV A + S +++ KS+
Sbjct: 774 YTPNEVVGDMARVRQILVNLLSNAVKFTA-RGEVLVSVS-AKPLFSDLELT----AKSMY 827
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
S ++ + V V DTG+GIP++
Sbjct: 828 STHYQIE---------------------------------------VAVSDTGIGIPVDR 848
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS---------------- 889
R+F F Q D+ST+R YGGTG+GL+IS+ L E+MGG++ VS
Sbjct: 849 MNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGHPPENWQINK 908
Query: 890 -EPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQ 948
P GSTF F++ + +L P+W E G R L+ID ++ +Q
Sbjct: 909 DTPTQGSTFYFSIVVQSSQ--NLLPQWNH----ADELAGKRLLIIDSHPTNRQILTKQVQ 962
Query: 949 RLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008
+ V +S A ++L + D + + EI + + Q R+
Sbjct: 963 CWGLVVEDTDSPTEAIAWLKQGKT-----------FDIAIVEMEIANLDGFNFATQVRQT 1011
Query: 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSK 1064
+ +LP + L+ S+ + + + V L KP++ S +LI +P K
Sbjct: 1012 SAGV--DLPLVMLI--SVGQQNFNPTDHRDFVAFLNKPIKQSPLYNILINVLCGEPLQIK 1067
Query: 1065 KLQQKR-KKPSLGHLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
+ + + P LL K +IL+ +D++VN++VA L++ G G ++
Sbjct: 1068 NWSRNQMRSPQDIPLLAEKLPLRILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEA 1127
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
L +D MD+QMP MDG +A QI+ + N+ S I+
Sbjct: 1128 LE-RQPYDVILMDMQMPIMDGLEAARQIKK-RYDSNDNPYSPRPR-------------II 1172
Query: 1181 AMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
A+TA+ +++ +C+ GMDDY+SKP EQL
Sbjct: 1173 AVTANAMESDRAECIAAGMDDYISKPIRMEQL 1204
>gi|351729217|ref|ZP_08946908.1| multi-sensor hybrid histidine kinase [Acidovorax radicis N35]
Length = 1628
Score = 265 bits (677), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 200/628 (31%), Positives = 301/628 (47%), Gaps = 106/628 (16%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+ E D EL AE + KS FLA +SHEIRTPMN ++GM + + + L Q DY
Sbjct: 854 RAEQDLRRAKEL---AEESTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLTERQHDY 910
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
+G+ L+ +IND+LD +KIE+G+L E PF L +L++V + KA KG+EL
Sbjct: 911 VSKIQQAGQHLLGVINDILDFSKIEAGKLMVEKQPFVLDRMLESVSDVVGYKAGAKGLEL 970
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
V+ VP ++GD R QI+ N N+IKFT+ G I ++V +V
Sbjct: 971 VCDVAADVPPNLVGDSLRLGQILINFANNAIKFTE-TGEISIAV--------------RV 1015
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
LE + N R+ L V DTG+
Sbjct: 1016 LEAAGN-----------------------------------------RLMLRFEVRDTGI 1034
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
G+ E R+F F QAD+ST+R YGGTG+GL+I + L ELMGGE+G S G GSTF
Sbjct: 1035 GLTPEQMGRLFQSFQQADTSTTRRYGGTGLGLAICKSLAELMGGEVGVESTYGQGSTFWV 1094
Query: 900 TVTFTEG--ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
V G R L P PD+ RG R LV+DD A V L + V A
Sbjct: 1095 AVPLERGAPARVLLPP------PDL---RGRRVLVVDDNQTAATVLSDMLLAMGFEVEQA 1145
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+S A L ++ + L+L+D + + G+ L ++ GL +++ +P
Sbjct: 1146 HSGLEALERLRESMARH--QPFGLLLLDWHMPGMD-GIQLAGHIR------GLGMAQ-VP 1195
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS--- 1074
K+ ++ E ++ GI T+L KP+ S+L + E S ++ P+
Sbjct: 1196 KMLMVTAYGREDVMRAARAQGIDTVLIKPVNASLLFDTLMQPLEHSTYSPRRVVTPAPAA 1255
Query: 1075 --LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
L ++G +L+V+DN +N+ VA L + G V + G+ A+D++ +D M
Sbjct: 1256 DELPLAIRGASVLLVEDNELNQMVAVELLLEAGFAVDVAENGQIALDRIE-RKAYDVVLM 1314
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP MDG AT Q+R + H+PI+AMTA+ ++A +
Sbjct: 1315 DMQMPVMDGETATRQLRRDPRHV--------------------HLPIVAMTANAMEADRQ 1354
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+C GM+D+V+KP E L+ A+ R+
Sbjct: 1355 RCFAAGMNDHVAKPIEPAALWAALGRWI 1382
>gi|401677137|ref|ZP_10809115.1| sensory box histidine kinase/response regulator [Enterobacter sp.
SST3]
gi|400215543|gb|EJO46451.1| sensory box histidine kinase/response regulator [Enterobacter sp.
SST3]
Length = 888
Score = 265 bits (677), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 192/611 (31%), Positives = 299/611 (48%), Gaps = 106/611 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A+ A+ AKS FLA +SHEIRTPMNG++GM Q+ +DT L A Q DY +S + L+ +I
Sbjct: 260 AQKANEAKSAFLANMSHEIRTPMNGIIGMTQLCLDTSLSADQRDYLTLVMSSAQSLLHII 319
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD ++IE+G++E E P + + +++ A++KGIEL + ++ VP+V++ D
Sbjct: 320 NDILDFSRIEAGKVELEAEPVPVRPFIQSLIRPHMPGASEKGIELLVDIAPDVPDVLLVD 379
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQI+TNL+GN++KFT +G + + V AD
Sbjct: 380 GARLRQILTNLLGNALKFTH-QGEVILIVEPADSA------------------------- 413
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
DRW+ F+ V D+G+GIP + Q IF F
Sbjct: 414 ----------DRWR----FR-------------------VCDSGIGIPADKQKAIFEAFS 440
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD+ST+R YGGTG+GL+IS LV MGGE+ SEPG GS FSF + + P+
Sbjct: 441 QADNSTTRRYGGTGLGLTISARLVAAMGGELTVSSEPGKGSEFSFVLPLAT---QAPGPE 497
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
+++ F G LV+DD + + L ++ + N+ A ++ + +
Sbjct: 498 ERRH---SHRFNGEPVLVVDDNATNLRLLAAMLSQMGLKPTCVNN---ASEAINRVKTGT 551
Query: 975 VLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
P L+L+D + D + + L L + Q + I +L++ D +
Sbjct: 552 AWP---LILLDAQMPDMDGVSLALELSVLPQVAES---------HIIMLSSMSRHFDINM 599
Query: 1034 LKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089
LK GI L KP+ + + F+ P K + + P++ G +IL+ +D
Sbjct: 600 LKRIGIQNYLHKPIAQNELHQAIAAAFERAP---KTVSESAPAPTVAPDTAGLRILLAED 656
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
N+VN++VA L++ G VD G A +++ +D +DLQMPEMDG A IR
Sbjct: 657 NLVNQKVAARLLERLGHTCQIVDNGVALLERWR-AGVWDVLLIDLQMPEMDGETA---IR 712
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
L E E+ G + P +AMTA +Q E+C++ G D Y++KP
Sbjct: 713 LLREE--ERARPGPAQ------------PTVAMTAHAMQGDKERCLQMGFDGYIAKPISQ 758
Query: 1210 EQLYTAVARFF 1220
E+L +AR
Sbjct: 759 ERLAEEIARVL 769
>gi|260221595|emb|CBA30317.1| hypothetical protein Csp_C22940 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 956
Score = 265 bits (677), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 193/607 (31%), Positives = 293/607 (48%), Gaps = 98/607 (16%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+AE A+ AKS FLA +SHEIRTPMN ++GM ++ TEL+ Q Y +S + L+ +
Sbjct: 218 QAEEANRAKSSFLANMSHEIRTPMNAIMGMSYLVQKTELNERQRGYLNKIQSSSQHLLGI 277
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IND+LD +KIE+G+L E + F L VLDN+ L KA KG+EL V +VP ++G
Sbjct: 278 INDILDYSKIEAGKLGIEHIEFELDKVLDNLAGLVGDKAASKGLELVFDVDKQVPLQLVG 337
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
DP R QI+ N N++KFT+ R ++D++ +V E+S + V
Sbjct: 338 DPLRLGQILVNYANNAVKFTE---------------RGEIDIRVRVQEESTSHV------ 376
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
L V DTG+GI E + +F F
Sbjct: 377 -----------------------------------VLHFAVRDTGIGISEEQKSVLFQSF 401
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
QAD+ST+R +GGTG+GL+ISR L ++M GE+G S G GSTF FT +G
Sbjct: 402 QQADASTTRKFGGTGLGLAISRQLAQMMEGEVGVDSTFGQGSTFWFTARLQKGISTGRAR 461
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
+ SE G R LV+DD + + LQ L + VA ++ + L +
Sbjct: 462 VLR------SELYGKRVLVVDDNDSARTLLQTMLQDLNL---VAEAVDAGPAALDAVYKS 512
Query: 974 SVLPQ-LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
+ Q +V +D W ++ + L Q+ + LE++ P++ L+ E
Sbjct: 513 AQAGQPFEIVFLD---W--QMPGMSGVELAQRLQALPLEVT---PRLVLVTGYGREEVLS 564
Query: 1033 ELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQK--RKKPSLG-HLLKGKQILVVDD 1089
++ GI T+L KP+ S+L + + Q P G L+G ++L+V+D
Sbjct: 565 SAEAAGIQTVLVKPVSASMLFDSVARELSGAPAPVQAFGTMPPGEGLARLRGARVLLVED 624
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
N +N+ VA L+ G V G+ AV+++ FD MD+QMP MDG AT IR
Sbjct: 625 NELNQEVATELLQGVGVEVAVAHNGQEAVEQVQ-AGRFDLVLMDMQMPVMDGLTATRTIR 683
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
E L +PI+AMTA+ + + E C+ GM+D+++KP E
Sbjct: 684 RDE--------------------ALSGLPIIAMTANAMASDREACLAAGMNDHLAKPIEP 723
Query: 1210 EQLYTAV 1216
E L+ ++
Sbjct: 724 EHLFASL 730
>gi|389578386|ref|ZP_10168413.1| PAS domain S-box [Desulfobacter postgatei 2ac9]
gi|389400021|gb|EIM62243.1| PAS domain S-box [Desulfobacter postgatei 2ac9]
Length = 1630
Score = 265 bits (677), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 201/624 (32%), Positives = 299/624 (47%), Gaps = 121/624 (19%)
Query: 611 LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDL 670
+ A AE A AKS+FLA +SHEIRTPMNG++GM +L+DT+L Q + S L
Sbjct: 950 MAAGAEMATRAKSEFLANMSHEIRTPMNGIIGMTGLLLDTDLSDEQRLFTGNVKASADAL 1009
Query: 671 ISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV 730
++LIND+LD +KIE+G+L+ E + F L LD+ + + KA++K +EL VS VP
Sbjct: 1010 LTLINDILDFSKIEAGKLDMEILDFELRPFLDDFAHMMALKAHEKDLELICEVSPEVPGQ 1069
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHK 790
+ GDPGR RQI+TNL N+IKFT + G + + HL K K++VL
Sbjct: 1070 LQGDPGRLRQILTNLTDNAIKFT-NAGEVVIQAHL------KHQTKEEVL---------- 1112
Query: 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850
+ +V+DTGVGI E Q +F
Sbjct: 1113 ---------------------------------------IYFSVKDTGVGIAPEKQGHLF 1133
Query: 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV----------SEPG----TGST 896
F Q D+S +R YGGTG+GL+IS+ L +LMGG+IG + S P +G
Sbjct: 1134 EQFTQVDASITRKYGGTGLGLAISKKLAQLMGGDIGVISPVPEINKLASRPSDSLHSGCL 1193
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
F FT F + ++ Q+ +PD + +R L++DD E L + V
Sbjct: 1194 FWFTAQFKQPPSSAETGHEQKIMPD--PLKNVRILIVDDNRTNRETLVRQLVGMGAKVSE 1251
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLID-KDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
A + A + T + L LA++ I + ++GL + ++ G +I
Sbjct: 1252 AADGKAALEKIKRTAQENRLYDLAILDIQMPGMTGDKLGLAI------KKEAFGADI--- 1302
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRL--------SVLIG--CFQEDPESSKK 1065
K+ L+ + D +S G LTKP+R SVL G +E+ +
Sbjct: 1303 --KLVLMLSIGRRGDARYFQSIGFSGYLTKPVRYSELSDTLASVLSGGQAGKEENARIRH 1360
Query: 1066 LQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPH 1125
L + K+P + +IL+ +DN+ N+ VA+G L+K G V V G A+ L
Sbjct: 1361 LNGEIKQPHV-------RILLAEDNITNQIVAKGILEKFGYSVDAVANGIEAIRALEKIP 1413
Query: 1126 NFDACFMDLQMPEMDGFQATWQIRHL-ENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
+D MDLQM E+DG +AT IR+ N IN I P++AMTA
Sbjct: 1414 -YDMVLMDLQMSELDGLKATRMIRNTASNVINPNI------------------PVVAMTA 1454
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFE 1208
+ + E+C+ GM+DY+SKP +
Sbjct: 1455 NAMAGDREKCLNAGMNDYISKPVD 1478
>gi|398997231|ref|ZP_10700060.1| PAS domain S-box [Pseudomonas sp. GM21]
gi|398124448|gb|EJM13958.1| PAS domain S-box [Pseudomonas sp. GM21]
Length = 1328
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 195/634 (30%), Positives = 295/634 (46%), Gaps = 124/634 (19%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + AE A AKS FLAT+SHEIRTPMN ++GM + + TELD Q +Y + H S
Sbjct: 582 EVQRAREAAEEATRAKSNFLATMSHEIRTPMNAIIGMSHLALRTELDHRQRNYIEKVHRS 641
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+++IND+LD ++IE+G++ E +PFHL +VLD ++ KA KG+EL ++
Sbjct: 642 AEYLLAIINDILDFSRIEAGKMHLEHIPFHLENVLDGFANMIGLKAEDKGLELLFNIAAE 701
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P T L+G+ ++ Q + V+L ++ + + VL L
Sbjct: 702 LP--------------TALIGDPLRLGQ------ILVNLGNNATKFTEQGEIVLGVELRG 741
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ ++ W V D+G+G+ E
Sbjct: 742 AAGEEAHLH-------------FW-----------------------VRDSGIGMSTEQC 765
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F PF QADSST+R YGGTG+GL+ISR LVELMGG I SEPG GSTF F V+
Sbjct: 766 SRLFQPFSQADSSTTRKYGGTGLGLAISRHLVELMGGSIWVESEPGHGSTFHFEVSLGVQ 825
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
L + + E G R LV+DD + E+ + + V VA S A +
Sbjct: 826 RDVQL-----RRMATADELFGSRVLVVDDNASAREILSGMTRSFGVEVDVAQSGPAALTL 880
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG--GLEISRNL-------- 1016
L + + + LVL+D W R G G+E R +
Sbjct: 881 LLEAEAKA--QPYDLVLMD---W---------------RMPGMDGVETVRQMQAAKLAQT 920
Query: 1017 PKIFLLATSISETDRDELKSDGI--VTLLTKPLRLSVLIGCF--------QEDPESSKKL 1066
P + ++ E R+E GI +LTKP+ S L+ Q D +S++L
Sbjct: 921 PSVIMVTAFGREEAREEASRQGIQLPVVLTKPVTPSTLLEALGRVLGKIPQTDTRASERL 980
Query: 1067 QQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN 1126
S L+G ++L+V+DN +NR +A L+ G + G A+D+L +
Sbjct: 981 DH---SASTMASLRGARLLLVEDNELNRELACELLESAGIELCLAVNGAEALDQLERDAD 1037
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
D MD QMP MDG+ AT +IR N +P++AMTAD
Sbjct: 1038 LDGVLMDCQMPVMDGYTATRKIREQSRWAN--------------------LPVIAMTADA 1077
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ E+ + CGM+D++SKP E ++ +A++
Sbjct: 1078 MAGDRERALACGMNDHISKPLNVEDMFATLAKWI 1111
>gi|421495807|ref|ZP_15943063.1| two-component system sensor protein [Aeromonas media WS]
gi|407185191|gb|EKE58992.1| two-component system sensor protein [Aeromonas media WS]
Length = 1060
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 211/661 (31%), Positives = 308/661 (46%), Gaps = 124/661 (18%)
Query: 572 TAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA--KSQFLATV 629
T I SI V LL+ +F A + A V + E + A+ EAA +A K F+A +
Sbjct: 304 THIWGSISVTCAMLLL--LFGAGVA--ALVRSRRREQL---AQQEAARLAQVKGDFIANM 356
Query: 630 SHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLE 689
SHEIRTPMN ++G+ +L LD Q + H +G+ L+ +IND+LD +KIESGRLE
Sbjct: 357 SHEIRTPMNAIMGLTYLLEQGGLDDGQHALVRKIHQAGQALLGIINDILDFSKIESGRLE 416
Query: 690 PEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNS 749
E VPF + +VLD+V ++ S+ +K +EL + + +IGD R Q++ NL GN+
Sbjct: 417 LERVPFSMEEVLDHVAAIMSTCVGEKHLELVVSSAPEQVSHLIGDALRLEQVLLNLTGNA 476
Query: 750 IKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKS 809
IKFT+ R +V+VK ++
Sbjct: 477 IKFTE---------------RGEVEVKVEL------------------------------ 491
Query: 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGI 869
EQ G LL V DTG+GIP E Q IF F QADSSTSR +GGTG+
Sbjct: 492 -----------EAEQDGMATLLFRVRDTGIGIPPEQQANIFNAFSQADSSTSRRFGGTGL 540
Query: 870 GLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER-NSLDPKWQQYVPDVSEFRGL 928
GL+ISR LV LMGGEIG SE G GS F F V + ER +L + Q +
Sbjct: 541 GLTISRRLVNLMGGEIGVTSELGKGSEFWFRVRLEQVERPEALSERLQH----------I 590
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
L+ DD + + + L V S + A +L + L ++ D
Sbjct: 591 SLLIADDNQVTRDALSMTVGSLGWQSRVVESGEQALHHLLRQGERFDVILLDWIMPGMD- 649
Query: 989 WDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL----KSDGIVTLLT 1044
E L + +QQ R I ++AT+ S+ DEL S+ + +L
Sbjct: 650 -GLETCLAIRRAFEQQERS----------PIIIMATAYSQ---DELMHRPGSEQVDLVLH 695
Query: 1045 KPLRLSVLIGC----FQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGA 1100
KP+ S L E + + L+ +++ L G +L+VDD+ +N VA
Sbjct: 696 KPVTGSSLYNAVARLIHEKRDHVEPLESGQRRLR----LPGVHVLLVDDSDINLEVATRL 751
Query: 1101 LKKHGA-IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
L++ GA ++T +D RA P D MD+QMP MDG++AT ++R L
Sbjct: 752 LQREGAEVITAIDGERALACLADPARRIDLVLMDVQMPVMDGYEATRRLRQLP------- 804
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
G P+LA+TA V + E + GM+D+++KP + EQL + R+
Sbjct: 805 -------------GREETPVLALTAGVFKDQREAALASGMNDFIAKPLDVEQLIATLLRY 851
Query: 1220 F 1220
Sbjct: 852 L 852
>gi|17231253|ref|NP_487801.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17132895|dbj|BAB75460.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 1550
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 213/719 (29%), Positives = 339/719 (47%), Gaps = 138/719 (19%)
Query: 545 VSNLDFGDPSRKH-EMHCRF--KQKPPVPWTAINASIGVVVI---------TLLVGHIFH 592
++NLD G+ + H E+ +F K +P + G++++ T H+
Sbjct: 792 IANLDLGEIQQSHLELLRKFGVKANLVIPILVKDELCGLLIVHQCATSRQWTSFETHLLR 851
Query: 593 AAINRIA---------QVENDYHEMMEL-KARAEAADVAKSQFLATVSHEIRTPMNGVLG 642
+++ +VE + +E+ +++AE A AKS FLA +SHEIRTPMN VLG
Sbjct: 852 QIADQVGIAVAQAQLLEVETRQRQELEVARSQAELASHAKSAFLANMSHEIRTPMNAVLG 911
Query: 643 MLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLD 702
M ++++T L+ Q D+ +T SG L++LIN++LD +K+E+G + E + F+L ++
Sbjct: 912 MTGLMLETLLNQEQRDFMETIRISGDALLTLINEILDLSKLEAGEMALENLNFNLSTCVE 971
Query: 703 NVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVS 762
VL L + +A+ KG+E+A + VP + GD R RQI+ NL+GN+IKFT G + +
Sbjct: 972 EVLDLLAPQAHSKGLEIAALIYRHVPIQLQGDASRLRQILMNLIGNAIKFT-SFGEVVMR 1030
Query: 763 VHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTM 822
V L +S+ + F V D
Sbjct: 1031 VEL------------------------RSETPTTAIIHFAVTD----------------- 1049
Query: 823 EQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMG 882
+G+GI LE Q ++FTPF Q D+ST+R YGGTG+GL+I + LV LMG
Sbjct: 1050 --------------SGLGITLEDQHKLFTPFTQVDASTTRKYGGTGLGLAICKQLVTLMG 1095
Query: 883 GEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEV 942
GEIG S+ G GS F F + F + L P +V D R LV+DD + ++
Sbjct: 1096 GEIGVESQLGKGSKFWFEIPFAK----QLQPV--SFVEDCGLLNNRRLLVVDDHATNRKI 1149
Query: 943 TRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLK 1002
+ + R M V A+ A S + + C + ++LID + + + G+ L +K
Sbjct: 1150 IYHQVSRWGMQVDQADRAVAALSMIVEACQQN--KPYDVILIDMQMPEMD-GMALGKQIK 1206
Query: 1003 QQRRKGGLEISRNLPKIFLLATSISETDRDELKSD---GIVTLLTKPLR--------LSV 1051
S P ++ TS ++ RDE++ G L KP++ +SV
Sbjct: 1207 AN--------SAIPPTPLIMLTSTNQ--RDEVQQAIKIGFAAYLVKPVKSSRLLDTIMSV 1256
Query: 1052 LIGCFQEDPESSKKLQQKRKKPSLGH--------------LLKGKQILVVDDNMVNRRVA 1097
L Q + E + Q+ +K +L H + +IL+ +DN+VN++VA
Sbjct: 1257 LKTPSQLEAEKLEVKSQELEKNNLDHSRNHNFTATQAQNSVSTKTRILLAEDNLVNQKVA 1316
Query: 1098 EGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE 1157
L+ G G+ + +L +D MD QMP +DG +AT EI+
Sbjct: 1317 LKQLQSLGYTADVAANGKEVL-QLLKQIPYDLILMDCQMPILDGLEAT-------KEIHR 1368
Query: 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
S +S I+AMTA+ ++ + C+ GMDDY+SKP EQL TA+
Sbjct: 1369 WAESSFASCR--------RPVIIAMTANAMKEDKQMCLDAGMDDYLSKPVMKEQLATAL 1419
>gi|430741730|ref|YP_007200859.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
gi|430013450|gb|AGA25164.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
Length = 919
Score = 265 bits (676), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 196/621 (31%), Positives = 288/621 (46%), Gaps = 94/621 (15%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+V + E++ K AEAA AKS+FLA VSHEIRTPMNG++GM ++++DT L Q +Y
Sbjct: 227 RVADRTAELVYAKEAAEAASRAKSEFLANVSHEIRTPMNGIIGMTELVLDTALSTEQQEY 286
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
+ +S L+++IND+LD +KIE+G+LE + PF L D L + L + +A+QKG+EL
Sbjct: 287 LEVVASSADSLLTVINDILDFSKIEAGKLELDRCPFDLRDCLGDALRPLAMRAHQKGLEL 346
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
A ++ VP+ +IGD GR RQI+ NLVGN+IKFT D+G + V+V A +V ++ +V
Sbjct: 347 AFDIAHNVPDALIGDGGRLRQIVVNLVGNAIKFT-DRGEVVVTVGQAWCDGKEVGLRIEV 405
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
L+ + H+ ++
Sbjct: 406 LDTGIGIPAHRHKAIFA------------------------------------------- 422
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
P E QAD S +R +GGTG+GLSIS LVE+MGGEI S G GSTFSF
Sbjct: 423 --PFE----------QADGSMTRKFGGTGLGLSISCRLVEMMGGEISLESRIGEGSTFSF 470
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
T F G + P + L L++DD + + R + M
Sbjct: 471 TARFGLG----VAPAPTTGAALGVDLHDLPVLIVDDNATNRRILRDLTIQWGMRPTTCED 526
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
A L + +LA D G L + R L I
Sbjct: 527 GYGALHQLRHAAAVGDPFRLAFFDAMMPAMD---GFTLLARCRSDRDMAAL-------PI 576
Query: 1020 FLLATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPSL 1075
+L+++ + D + + G V LTKP + L ++ + P S +
Sbjct: 577 IMLSSAGLQGDAERCREFG-VAYLTKPAKQSDLLKAIVDILSDTPSSKAAAALDSSGIAS 635
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
+ ++LV +DN VN+ +A L K G V GR A+++L FD MDLQ
Sbjct: 636 SPAPRRLRVLVAEDNPVNQTLAIRLLAKLGHDSVVVGDGRQALNRLE-KGGFDLVLMDLQ 694
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP +DG +AT +R E+E E H+P++AMTA ++ E+C+
Sbjct: 695 MPNLDGLEATSLLR--EHEAREG----------------GHMPVIAMTAHAMRGDRERCL 736
Query: 1196 KCGMDDYVSKPFEDEQLYTAV 1216
G D YVSKP L A+
Sbjct: 737 AAGCDGYVSKPMRSRDLAGAI 757
>gi|376004438|ref|ZP_09782141.1| Signal transduction histidine kinase [Arthrospira sp. PCC 8005]
gi|375327203|emb|CCE17894.1| Signal transduction histidine kinase [Arthrospira sp. PCC 8005]
Length = 1355
Score = 265 bits (676), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 195/635 (30%), Positives = 306/635 (48%), Gaps = 112/635 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ + + A AA AKS+FLAT+SHEIRTPMN V+GM +L+DT L Q D+ +T +
Sbjct: 654 QELSQARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPLSLVQQDFVETIRS 713
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+SLIND+LD +KIESG+L+ E PF L L+ L L ++KA K +EL ++
Sbjct: 714 SSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLLATKAASKSLELGYFIDA 773
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
P V+GD R RQI+ NL+ N++KFT +G + VSV A + S +++ KS+
Sbjct: 774 YTPNEVVGDMARVRQILVNLLSNAVKFTA-RGEVLVSVS-AKPLFSDLELT----AKSMY 827
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
S ++ + V V DTG+GIP++
Sbjct: 828 STHYQIE---------------------------------------VAVSDTGIGIPVDR 848
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS---------------- 889
R+F F Q D+ST+R YGGTG+GL+IS+ L E+MGG++ VS
Sbjct: 849 MNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGHPPENWQINK 908
Query: 890 -EPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQ 948
P GSTF F++ + +L P+W E G R L+ID ++ +Q
Sbjct: 909 DTPTQGSTFYFSIVVQSSQ--NLLPQWNH----ADELAGKRLLIIDSHPTNRQILTKQVQ 962
Query: 949 RLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008
+ V +S A ++L + D + + EI + + Q R+
Sbjct: 963 CWGLVVEDTDSPTEAIAWLKQGKT-----------FDIAIVEMEIANLDGFNFATQVRQT 1011
Query: 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSK 1064
+ +LP + L+ S+++ + + V L KP++ S +LI +P K
Sbjct: 1012 SAGV--DLPLVMLI--SVAQQNFNPTDHRDFVAFLNKPIKQSPLYNILINVLCGEPLQIK 1067
Query: 1065 KLQQKR-KKPSLGHLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
+ + + P LL K +IL+ +D++VN++VA L++ G G ++
Sbjct: 1068 NWSRNQMRSPQDIPLLAEKLPLRILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEA 1127
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP-- 1178
L +D MD+QMP MDG +A QI+ + + N + P
Sbjct: 1128 LE-RQPYDVILMDMQMPIMDGLEAARQIK-----------------KRYDNQEKPYSPRP 1169
Query: 1179 -ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
I+A+TA+ +++ +C+ GMDDY+SKP EQL
Sbjct: 1170 RIIAVTANAMESDRAECIAAGMDDYISKPIRMEQL 1204
>gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 1099
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 196/630 (31%), Positives = 304/630 (48%), Gaps = 124/630 (19%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
++ E K AEA + KS+FLAT+SHEIRTPMNGV+GM +L+DT+L Q +A+T +
Sbjct: 447 RQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTKLTEEQRHFAETIRD 506
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
SG+ L+++IND+LD +K+E+G+L+ ++ F L ++++V+ + + +A+ KGIE+A +
Sbjct: 507 SGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDP 566
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
R+ +V DPGR RQ++ NL GN++KFT+ KG + + V L LE+
Sbjct: 567 RLRMLVRSDPGRLRQVLMNLGGNAVKFTE-KGGVSIEVTL--------------LERPGA 611
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
D V +T G P + + + F +D
Sbjct: 612 QPMVHFD-VRDTGIGIPPEAQGRLFSMFMQVD---------------------------- 642
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
+ST+R YGGTG+GL+I R L ELMGGE+G S+PG GS F +V
Sbjct: 643 ------------ASTARRYGGTGLGLAICRRLAELMGGEVGLESQPGKGSRFWMSVPMEL 690
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
S P PD++ G R LV+DD + +V L+ + VH
Sbjct: 691 LAPQSAAP------PDLT---GHRVLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMG 741
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
L+ + ++A++ D ++ +V G E+ R + I +L S
Sbjct: 742 ELTRAAAMGTPWEVAVI-------DSQMPVVT-----------GSEMVRMMRAIPMLGGS 783
Query: 1026 ----ISETDRDELKSDG---IVTLLTKPLRLSVL-------IGCFQEDPESSKKLQQKRK 1071
S + DG I L KPLR S L +G + + + ++
Sbjct: 784 RIIVTSSQGMPAEQQDGQPAIDAFLHKPLRQSTLLDTIGRVLGLSGPEEQPAAPAEEHNA 843
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD--KLTPPHNFDA 1129
S L+ ILV +DN VN++VA G L+K G V V G A++ +L P +D
Sbjct: 844 PDSTAKRLR---ILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLP---YDV 897
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMPEMDG +AT IR L + +PI+AMTA+ ++
Sbjct: 898 VLMDVQMPEMDGLEATRAIRSLAS-------------------AAARIPIVAMTANAMRG 938
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
++ C GMD Y+SKP + +L A+A++
Sbjct: 939 DDQMCFDAGMDGYISKPIDRHKLAEALAKY 968
>gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
Length = 1618
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 196/626 (31%), Positives = 291/626 (46%), Gaps = 102/626 (16%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+ E D EL AE KS FLA +SHEIRTPMN ++GM + + + L+ Q DY
Sbjct: 854 KAEQDLRLAKEL---AEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLNPRQHDY 910
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
+G+ L+ +IND+LD +KIE+G+L E PF L +L+ V + KA KG+EL
Sbjct: 911 VSKIQQAGQHLLGVINDILDFSKIEAGKLTVEKHPFVLDRMLEGVADVVGYKAGAKGLEL 970
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
V+ VP ++GD R QI+ N N+IKFT+ R ++ + +V
Sbjct: 971 VCDVAADVPPNLVGDSLRLGQILINFSNNAIKFTE---------------RGEISIAVRV 1015
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
E+ R++L V DTG+
Sbjct: 1016 QEQDAQ-----------------------------------------RVRLRFEVRDTGI 1034
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
G+ E R+F F QAD+ST+R YGGTG+GL+I + L ELMGGE+G SE G GSTF
Sbjct: 1035 GLTPEQMGRLFESFQQADASTTRRYGGTGLGLAICKSLAELMGGEVGVDSEYGKGSTFWV 1094
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
++ G P Q P + RG R LV+DD A V LQ + V A S
Sbjct: 1095 SLPLERGA-----PARQLQPP--ASLRGRRVLVVDDNHTAATVLSEMLQSMGFHVDQAYS 1147
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
A L +T L+L+D W G+ + R G EI P++
Sbjct: 1148 GLEALETLRQ--ATQQQKPYGLLLLD---WHMP-GMDGVELAGHIRSMGLAEI----PQM 1197
Query: 1020 FLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKR-----KKPS 1074
++ E ++ GI +L KP+ SVL + E++ + Q+ +
Sbjct: 1198 LMVTAYGREDVMRAARAQGIEAVLIKPVNASVLFDTLMQPLENAAVVAQRAPAVAPDSEA 1257
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
L ++G Q+L+V+DN +N+ VA L+ G V G A+ +L N+D MD+
Sbjct: 1258 LPQAIRGAQVLLVEDNELNQMVAVELLRDAGFAVDVAGNGERAL-QLLDGKNYDVVLMDM 1316
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP MDG AT ++R + +P++AMTA+ ++A ++C
Sbjct: 1317 QMPVMDGETATRRLRADPRHAD--------------------LPVIAMTANAMEADRQRC 1356
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFF 1220
GM+D+V+KP E L+ A+AR+
Sbjct: 1357 FAAGMNDHVAKPIEPSVLWAALARWI 1382
>gi|392410144|ref|YP_006446751.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390623280|gb|AFM24487.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1125
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 202/622 (32%), Positives = 300/622 (48%), Gaps = 109/622 (17%)
Query: 604 DYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTA 663
D E+ + + RA+ AD +KSQFLA +SHEIRTPMN ++GM ++ ++T L Q +Y +T
Sbjct: 471 DVTELEQSRERAQQADRSKSQFLANMSHEIRTPMNAIIGMAELALNTTLTQVQREYIETI 530
Query: 664 HNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYV 723
S L++LIND+LD +KIE+G+L+ PF D + +V+ S +A+ KG+ELA +
Sbjct: 531 EMSAHSLLALINDILDFSKIEAGKLQLLPGPFCFRDHVCSVVQTLSLQAHSKGLELACGI 590
Query: 724 SDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKS 783
+ +P +IGD R QI+ NLVGN+IKFT G + V V D+ S+ +
Sbjct: 591 APSIPANLIGDQDRIGQILLNLVGNAIKFTA-HGEVLVQV----DMESRSE--------- 636
Query: 784 LNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPL 843
D+VY L + V DTG+GIP
Sbjct: 637 --------DRVY----------------------------------LRMVVSDTGIGIPY 654
Query: 844 EAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903
E Q IF F QAD STSR YGGTG+GL+I+ LVELMGG+I S G GS F +
Sbjct: 655 EKQKTIFCEFEQADGSTSRQYGGTGLGLAITAQLVELMGGKIWVESTLGKGSKFHVNL-- 712
Query: 904 TEGERNSLDPKWQQYVPDVS---EFRGLRALVIDDKSIRAEVTRYHLQRLEM-AVHVANS 959
P Q+ P+ S G+ LV+DD + + L + +M V V++
Sbjct: 713 ---------PLQVQHTPEESIPNSLEGISVLVVDDNATNRRILEEVLTQWDMHPVAVSSG 763
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPK 1018
M+ A L + LA+V D E+ G L ++ + L K
Sbjct: 764 ME-ALRSLREKRDAGESFDLAIV----DCMMPEMNGFQLSAEIRSEPDFASL-------K 811
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPS 1074
I +L ++ +T + L+ I L KP+ S ++ Q +S + + P
Sbjct: 812 ILMLTSASPDTSAESLQLLNIDACLLKPIHQSNLYNTIVRILQGPKDSCAPEPAQLRLPV 871
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
+IL+ +DN N++VA G L + G V V G+ ++ + FD MD+
Sbjct: 872 AD---TPSRILLAEDNAFNQKVALGMLTQMGHSVKVVSNGQEVLNAIE-NERFDLILMDV 927
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP MDGF+AT +IR LE E G + PI+AMTA ++ E+C
Sbjct: 928 QMPHMDGFEATKRIRRLE----EHDGGGRT-------------PIIAMTAYAMKGDREKC 970
Query: 1195 MKCGMDDYVSKPFEDEQLYTAV 1216
++ GMD Y+SKP +L + +
Sbjct: 971 LQTGMDGYLSKPVNSRELASMI 992
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 24/157 (15%)
Query: 1068 QKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHG----AIVTCVDCGRAAVDKLTP 1123
Q + S+ + L+G +LVVDDN NRR+ E L + A+ + ++ R+ +K
Sbjct: 717 QHTPEESIPNSLEGISVLVVDDNATNRRILEEVLTQWDMHPVAVSSGMEALRSLREKRDA 776
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
+FD +D MPEM+GFQ + +IR S F ++ IL +T
Sbjct: 777 GESFDLAIVDCMMPEMNGFQLSAEIR---------------SEPDFASL-----KILMLT 816
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ S E +D + KP LY + R
Sbjct: 817 SASPDTSAESLQLLNIDACLLKPIHQSNLYNTIVRIL 853
>gi|383188616|ref|YP_005198744.1| signal transduction histidine kinase [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
gi|371586874|gb|AEX50604.1| signal transduction histidine kinase [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 916
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 205/682 (30%), Positives = 315/682 (46%), Gaps = 126/682 (18%)
Query: 552 DPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINR-IAQVENDYHEMME 610
D R+ ++ R + P + + I + ++L +H + + I Q +D E +E
Sbjct: 213 DRIRRGQLDSRVEGNMPGELSMLKNGINSMAMSLTA---YHEEVQQNIDQATSDLRETLE 269
Query: 611 -----------LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L Q DY
Sbjct: 270 QMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLSPTQADY 329
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
QT S L+++INDVLD +K+E+G+L E +PF L ++LD V+ L + A+ KG+EL
Sbjct: 330 LQTIERSANHLLTIINDVLDFSKLEAGKLVLEHIPFSLREMLDEVVILLAHTAHDKGLEL 389
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+ V + VPE V+GDP R +Q++TNL+GN+IKFT+ G+I ++V L
Sbjct: 390 TLNVHNNVPENVLGDPMRMQQVVTNLLGNAIKFTE-TGNIDINVEL-------------- 434
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
+S N++Q ++L V + DTG+
Sbjct: 435 --RSQNNLQ---------------------------------------VELEVQIHDTGI 453
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GI Q ++F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+ GSTF F
Sbjct: 454 GISERQQSQLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFYSQLNRGSTFWF 513
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
VT E + P +S G R ++ A+ T LQ + V +
Sbjct: 514 HVTLELNENRHITPV------SMSHLEGKRLAYVEANPAAAKATMEILQATPLDVTHRTT 567
Query: 960 MQLACSYLSDT--CSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ D CS V P L D + K +G+ H +L LP
Sbjct: 568 LAALPDPWYDIMLCSIPVKPDQVLADYDGKL-QKVLGMTQHLLLA-------------LP 613
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPL-RLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
F + D +ELK G+ L KP+ + +L E P S + + K S
Sbjct: 614 SQF-------QVDAEELKRRGVQACLIKPMSSIRLLPLLLHEQPASVRVIGNDEDKTSRL 666
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
L + VDDN N ++ L++ G A+D + + D MD+QM
Sbjct: 667 PLTA----MAVDDNPANLKLIGALLEELVETTVLCHSGEEAID-VARHTDLDIILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P++DG +A+ EI Q+A + P++A+TA + EQ +K
Sbjct: 722 PDIDGIRAS--------EIIHQMARHAKT------------PVVAVTAHSLSGEREQLLK 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
GMDDY+SKP ++ L ++R
Sbjct: 762 LGMDDYLSKPIDESMLKNVLSR 783
>gi|428303899|ref|YP_007140724.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
gi|428245434|gb|AFZ11214.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Length = 1112
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 197/623 (31%), Positives = 302/623 (48%), Gaps = 103/623 (16%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ + +A AA AK++FLAT+SHEIRTPMNGV+GM +L++T+L Q D+ +T
Sbjct: 568 EELALTRDQAIAATQAKAEFLATMSHEIRTPMNGVIGMTGLLLETDLTPQQRDFVETIRT 627
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
SG L+++IND+LD +KI+SG+LE E PF L ++ L L + KA KG+ELA +
Sbjct: 628 SGDSLLTIINDILDFSKIDSGKLELEKHPFELRIGIEEALDLVAHKAGSKGLELAYLIDS 687
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
P+ ++GD R RQI+ NL+ N+IKFT + G + +SV ++
Sbjct: 688 NTPQTILGDITRLRQILVNLLSNAIKFT-EVGEVVLSV---------------TAKQIPG 731
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
VQH Y ++ V+DTG+GIP
Sbjct: 732 EVQHNCSDTY---------------------------------EIKFAVKDTGIGIPANR 758
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
R+F F Q DSST+R YGGTG+GL IS+ L ++MGG++ S+P GS F FT+
Sbjct: 759 MDRLFQSFSQVDSSTTRQYGGTGLGLVISQRLSQIMGGKMWVESQPNQGSIFYFTIVAQS 818
Query: 906 GERNS-LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
+S LD VP + G R L++DD + ++ Q M + A
Sbjct: 819 IPCSSILD------VPTATTLSGKRLLIVDDNATNRKILTLQAQSWGMLSNAVTGGNEAL 872
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
LS Q + ++D + + + GL L +++ L ++LP + L +
Sbjct: 873 ECLSRG------EQYDIAVLDMQMPEMD-GLTLAAEIRK------LPQFQHLPLVMLTSL 919
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK-- 1082
S +K + L+KP++ L F + S +L + P K
Sbjct: 920 GRSRIVEQGVKHN-FAAFLSKPIKQEQLYNVFLQ--ALSDQLVTTKAPPPTSSAATTKLA 976
Query: 1083 -----QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFDACFMDLQ 1135
+IL+ +DN+VN++VA LK+ G V G A++ L P +D MD+Q
Sbjct: 977 ESLPLRILLAEDNVVNQKVAIQLLKRLGYRADVVGNGCEALEALCHVP---YDVVLMDMQ 1033
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MPEMDG +AT +I I + +S + I+A+TA+ +Q E C+
Sbjct: 1034 MPEMDGIEATRRI----------IQNWQS---------VERPRIIALTANAMQGDKELCL 1074
Query: 1196 KCGMDDYVSKPFEDEQLYTAVAR 1218
+ GMDDY+SKP E L A+++
Sbjct: 1075 QAGMDDYLSKPIRLENLVQALSK 1097
>gi|333997328|ref|YP_004529940.1| multi-sensor hybrid histidine kinase [Treponema primitia ZAS-2]
gi|333738372|gb|AEF83862.1| multi-sensor hybrid histidine kinase [Treponema primitia ZAS-2]
Length = 811
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 195/638 (30%), Positives = 310/638 (48%), Gaps = 121/638 (18%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+VE E+ + AE A++AKS+FL+ +SHEIRTPMN ++GM + + + DY
Sbjct: 269 RVEERTKELQVSQQAAERANMAKSEFLSNMSHEIRTPMNAIIGM-TTIGGRAANTERKDY 327
Query: 660 A-QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIE 718
A ++ + L+ +IN++LD +KIE+ +LE F+ F+ +L V+++ + K +K
Sbjct: 328 AFGKIQDASQHLLGVINEILDMSKIEANKLELSFLEFNFEKMLQKVVNVINFKVEEKHQI 387
Query: 719 LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778
+I++ +P V+IGD R Q+ITNL+GNS+KFT + G I ++ L S+ D
Sbjct: 388 FSIHIDKAIPPVLIGDDQRLAQVITNLLGNSVKFTPEGGAISLTTKLIAGDESQGD---- 443
Query: 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTG 838
D Y + + V+D+G
Sbjct: 444 -------------DAEYT---------------------------------VQIEVQDSG 457
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
+GI Q ++FT F QADS TSR +GGTG+GL+IS+ +VE+MGG I SE G GSTF
Sbjct: 458 IGISPAQQDKLFTSFQQADSGTSRKFGGTGLGLAISKRIVEMMGGRIWIESELGKGSTFI 517
Query: 899 FTVTFTEGE---RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH 955
FTV G+ ++SL P + +R L +DD E+ Y +
Sbjct: 518 FTVKARRGKSEYKSSLAPG--------RNWGNIRVLAVDDAP---EIREYFAE------- 559
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKD-VWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+A AC D + AL LI K+ V+D ++++ Q G+E+SR
Sbjct: 560 IAQRFGFACDVAPDA-------EEALTLIQKNGVYD------IYFVDWQMPGINGIELSR 606
Query: 1015 NL-----PKIFLLATSISETD--RDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESS 1063
+ K ++ S +E D +DE K G+ L KPL S ++ C + S
Sbjct: 607 KIKEHQDSKSVVIMISSTEWDLIQDEAKKAGVDKFLPKPLFPSPIADLITECLGQGAAPS 666
Query: 1064 KKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP 1123
+ + KG++IL+ +D +N+ + L+ + C G+ A+ +
Sbjct: 667 GETGTEEAVS-----YKGRRILLAEDVDINQEIVRTLLEPTELEIVCAGNGKEALRIFSE 721
Query: 1124 -PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAM 1182
P F+ FMD+QMPEMDGF+AT IR LEN N + +PI+AM
Sbjct: 722 DPLGFNMIFMDVQMPEMDGFEATRSIRALENAPNAKT-----------------IPIVAM 764
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
TA+V + E+C+ GM+D+V KPF+ E++ + ++
Sbjct: 765 TANVFREDVERCLASGMNDHVGKPFDFEEILEKLRKYI 802
>gi|209523540|ref|ZP_03272094.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|423065813|ref|ZP_17054603.1| putative two-component hybrid sensor and regulator [Arthrospira
platensis C1]
gi|209495945|gb|EDZ96246.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|406712571|gb|EKD07755.1| putative two-component hybrid sensor and regulator [Arthrospira
platensis C1]
Length = 1355
Score = 264 bits (674), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 195/635 (30%), Positives = 305/635 (48%), Gaps = 112/635 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ + + A AA AKS+FLAT+SHEIRTPMN V+GM +L+DT L Q D+ +T +
Sbjct: 654 QELSQARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPLSLVQQDFVETIRS 713
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+SLIND+LD +KIESG+L+ E PF L L+ L L ++KA K +EL ++
Sbjct: 714 SSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLLATKAASKSLELGYFIDA 773
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
P V+GD R RQI+ NL+ N++KFT +G + VSV A + S +++ KS+
Sbjct: 774 YTPNEVVGDMARVRQILVNLLSNAVKFTA-RGEVLVSVS-AKPLFSDLELT----AKSMY 827
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
S ++ + V V DTG+GIP++
Sbjct: 828 STHYQIE---------------------------------------VAVSDTGIGIPVDR 848
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS---------------- 889
R+F F Q D+ST+R YGGTG+GL+IS+ L E+MGG++ VS
Sbjct: 849 MNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGHPPENWQINK 908
Query: 890 -EPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQ 948
P GSTF F++ + +L P+W E G R L+ID ++ +Q
Sbjct: 909 DTPTQGSTFYFSIVVQSSQ--NLLPQWNH----ADELAGKRLLIIDSHPTNRQILTKQVQ 962
Query: 949 RLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008
+ V +S A ++L + D + + EI + + Q R+
Sbjct: 963 CWGLVVEDTDSPTEAIAWLKQGKT-----------FDIAIVEMEIANLDGFNFATQVRQT 1011
Query: 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSK 1064
+ +LP + L+ S+ + + + V L KP++ S +LI +P K
Sbjct: 1012 SAGV--DLPLVMLI--SVGQQNFNPTDHRDFVAFLNKPIKQSPLYNILINVLCGEPLQIK 1067
Query: 1065 KLQQKR-KKPSLGHLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
+ + + P LL K +IL+ +D++VN++VA L++ G G ++
Sbjct: 1068 NWSRNQMRSPQDIPLLAEKLPLRILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEA 1127
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP-- 1178
L +D MD+QMP MDG +A QI+ + + N + P
Sbjct: 1128 LE-RQPYDVILMDMQMPIMDGLEAARQIK-----------------KRYDNQEKPYSPRP 1169
Query: 1179 -ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
I+A+TA+ +++ +C+ GMDDY+SKP EQL
Sbjct: 1170 RIIAVTANAMESDRAECIAAGMDDYISKPIRMEQL 1204
>gi|373458202|ref|ZP_09549969.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
gi|371719866|gb|EHO41637.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
Length = 748
Score = 264 bits (674), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 194/627 (30%), Positives = 300/627 (47%), Gaps = 113/627 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + K E A+ AK +FLA +SHEIRTPMNG+LGM ++ ++T L A Q DY +S
Sbjct: 213 ELKKAKEETERANKAKDEFLANMSHEIRTPMNGILGMTELALETRLTAEQRDYLNVVKSS 272
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+++IND+LD +KIE+G+L+ E + F+L+D++ +++ + K+N+K IELA ++
Sbjct: 273 AEALLAIINDILDFSKIEAGKLDLEEIDFNLYDMIGDMIKPLAIKSNEKKIELAYFIDPD 332
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP + GDP R RQI+ NL+GN+IKFT+ KG + + V A+ + K+ +K V + +
Sbjct: 333 VPIFIKGDPIRLRQILINLLGNAIKFTE-KGQVVLEVLKAERLDDKIILKFGVHDTGIGI 391
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ DK++ E+F D + T
Sbjct: 392 PREVQDKIF---------------ESFVQADTSIT------------------------- 411
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS--------EPGTGSTFS 898
R +GGTG+GL+I LV +M G+I S + G G++F
Sbjct: 412 ---------------RKFGGTGLGLAICMRLVRMMNGKIWLESPSTYPSRKKGGPGTSFF 456
Query: 899 FTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
FT E E P Y +GL L+IDD I + L++ ++ V A
Sbjct: 457 FTAQLHEAEHRETTP----YRILQKNLKGLNVLLIDDNPINRSYFQKILEKNKLQVTTAE 512
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
S A L + L++ D + + + + L Q R L+ + +P
Sbjct: 513 SAFKALEILKTN------QRFDLIITDAQMPEMD-----GFELSTQIR--ALKNYKKVP- 558
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLS-------VLIGCFQEDPESSKKLQQKRK 1071
I LL +S D + K GI L KP++L+ V +G QE+ + Q
Sbjct: 559 IILLTSSGMRGDSERCKQIGINAYLPKPVKLTDFLKALQVTLGLPQEEEVQPSLVTQYTV 618
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
+ L L ILV +DN VN+++A L+K+G G ++KL H +D
Sbjct: 619 REVLPRL----HILVAEDNPVNQKLAIRLLEKNGYYADIAKNGLEVLEKLKKNH-YDLIL 673
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMPEMDG QAT +IR LEN G H+PI+A+TA ++
Sbjct: 674 MDVQMPEMDGLQATQKIRELEN-------------------GKSHIPIIALTAHAMKKDI 714
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ C+ MD YVSKP E+L+ + R
Sbjct: 715 DMCLNAAMDGYVSKPIRKEELFKEIER 741
>gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1559
Score = 264 bits (674), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 202/634 (31%), Positives = 296/634 (46%), Gaps = 125/634 (19%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+AE A KS FLA +SHEIRTPMN VLGM ++++T L++ Q D+ +T SG L+SL
Sbjct: 888 QAELASKTKSAFLANMSHEIRTPMNAVLGMTGLMLETPLNSEQQDFIETIRISGDALLSL 947
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IN++LD +K+E+G + E + F L L+ VL L + A+ KG+E+A + VP + G
Sbjct: 948 INEILDLSKLEAGEMALETLDFDLSTCLEEVLELLAPSAHNKGLEIAALIYPNVPTQLQG 1007
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
D GR RQI+ NL+ N+IKFT + G + V L +SL+S +
Sbjct: 1008 DAGRLRQILMNLISNAIKFTSN-GEVVVRAEL----------------RSLSST---TAT 1047
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
+Y + DTG+GI E Q R+FTPF
Sbjct: 1048 IY------------------------------------FAITDTGLGITFEDQCRLFTPF 1071
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
Q D+S +R YGGTG+GL+I + LV LMGGEIG S G GS F F VTF
Sbjct: 1072 TQVDASNTRKYGGTGLGLAICKQLVSLMGGEIGVESRLGKGSKFWFEVTFA--------- 1122
Query: 914 KWQQYVPDVSE-----FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
QQ P SE R LV+DD + ++ + R M V A S +A +
Sbjct: 1123 --QQLYPISSESERELLINRRLLVVDDNATNRKIIHHQATRWGMLVDQAASATIALKAIE 1180
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+T L +A++ D+ E+ G+ L +K G LP I L +T+
Sbjct: 1181 ETAKQKNLYDIAVI----DMHMPEVDGMTLGEQIKANSAIAG------LPLIMLTSTN-- 1228
Query: 1028 ETDRDELKSD---GIVTLLTKPLRLSVLIGCF------QEDPESSKKLQQKRKKPS---- 1074
RDE++ G L KP++ S L+ Q E+ + Q+ + K
Sbjct: 1229 --QRDEIQRALKIGFAAYLVKPVKPSRLLDTIMTILGTQIKEETEVRSQEFKLKDYENNS 1286
Query: 1075 ---------LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPH 1125
L +IL+ +DN+VN++VA L+ G G+ + +L
Sbjct: 1287 NDHSSSSRLLARDFHKLRILLAEDNLVNQKVALKQLQSLGYSADVAGNGKEVL-QLLEKI 1345
Query: 1126 NFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTAD 1185
+D MD QMP +DG + T +I + ESS V ++AMTA+
Sbjct: 1346 PYDLILMDCQMPVLDGLETTKEIHRWQ----------ESSF-----VSSRRPVVIAMTAN 1390
Query: 1186 VIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
++ + C+ GMDDY+SKP E+L A+ R+
Sbjct: 1391 AMKEDQQMCLDAGMDDYLSKPVIKEKLAAALQRW 1424
>gi|410664899|ref|YP_006917270.1| response regulator receiver domain-containing protein [Simiduia
agarivorans SA1 = DSM 21679]
gi|409027256|gb|AFU99540.1| response regulator receiver domain-containing protein [Simiduia
agarivorans SA1 = DSM 21679]
Length = 872
Score = 264 bits (674), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 205/649 (31%), Positives = 316/649 (48%), Gaps = 113/649 (17%)
Query: 584 TLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGM 643
T +VG +A I+R V+ E+ K+ A++A AKS+FL +SHEIRTPMN ++GM
Sbjct: 316 TKIVG--VNADISRFKAVQE---ELTVAKSLADSASQAKSEFLTRMSHEIRTPMNAIIGM 370
Query: 644 LQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDN 703
+L DT L Q DY + L+ +IN++LD AKIE+G + E F L D L
Sbjct: 371 GHLLSDTRLSRTQKDYLSNIDQAANSLLGIINEILDFAKIEAGTIVLEHNHFDLSDALAK 430
Query: 704 VLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
++ + A +K +E+ ++++ VP + GD R RQ + NL+ N+IKFT KG I ++V
Sbjct: 431 LVRKAAPAAERKNLEVLVHMAPEVPHYLRGDSLRLRQALFNLLDNAIKFTH-KGEIQINV 489
Query: 764 HLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME 823
+ H+++ Y L F V DR
Sbjct: 490 SV-----------------------HETNTHYVALK-FDVCDR----------------- 508
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
G+G+ E +FTPFMQAD ST R +GGTG+GL++S+ L+ELM G
Sbjct: 509 --------------GIGMTREQLAELFTPFMQADGSTRRRFGGTGLGLTVSKHLIELMHG 554
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE-FRGLRALVIDDKSIRAEV 942
EI S PG GS FSFT F +L V D S+ FR L+ LV+DD ++
Sbjct: 555 EISVNSSPGQGSQFSFTARFGHSVIGALP------VRDKSQKFRHLKTLVVDDNKAARQI 608
Query: 943 TRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLK 1002
L++ HV + A ++ + + P LVL+D + + + GL +K
Sbjct: 609 LTNLATHLDL--HVTSVASAAEAFSAIELADRDQP-FDLVLMDYQMPEID-GLSASRTIK 664
Query: 1003 QQRRKGGLEISRNLPKIFLLATSISETDRDELKSDG-------IVTLLTKPLRLSVLIGC 1055
++ L +S+ +P I L +S RDE+ D + + ++KP+ S L
Sbjct: 665 EK-----LSLSQ-IPAIIL----VSAFHRDEVLGDKQSQTDIPVESFISKPISQSHLFDA 714
Query: 1056 FQEDPESSKKLQQKRKKPS--LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDC 1113
E S + P+ L LKG ++L+ +DN+VN++VA G L K V +
Sbjct: 715 IAEVFGDSVFRSDADQLPAEQLAKTLKGVRVLLAEDNVVNQKVAVGILNKMDVAVDIANN 774
Query: 1114 GRAAVDKLTPP--HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGN 1171
G+ A+D L + + A MD++MPE+DG+ AT ++R +G +
Sbjct: 775 GQEAIDLLNSHACNYYGAVLMDMEMPEVDGYDATRRMR-----------AGNHCKD---- 819
Query: 1172 VGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+PI+AMTA ++ E+C+ GMD Y++KP + E LY +A F
Sbjct: 820 -----IPIIAMTAHAMRGDKERCLAAGMDAYITKPVKPELLYQTLASFI 863
>gi|407793745|ref|ZP_11140777.1| hybrid sensor histidine kinase [Idiomarina xiamenensis 10-D-4]
gi|407214444|gb|EKE84292.1| hybrid sensor histidine kinase [Idiomarina xiamenensis 10-D-4]
Length = 874
Score = 264 bits (674), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 195/628 (31%), Positives = 297/628 (47%), Gaps = 112/628 (17%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
M + K +AE A+ AK +FLA +SHEIRTP+N ++GM + + TELDA Q Y + +S
Sbjct: 195 MEQAKEQAEQANQAKGEFLANMSHEIRTPINAIVGMANLCLKTELDAKQTRYLRVIDSSS 254
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
K L+ +IND+LD +KI++G+L E +PF L DVL + +F+ +A K +E I + +
Sbjct: 255 KALLGVINDILDFSKIDAGKLVMEQIPFDLEDVLTTLADMFAFRAYDKDLEFIINLPASI 314
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P +++GDP R Q++ NLV N+IKFT+D G I V V L L+KS
Sbjct: 315 PTLLLGDPLRLNQVLVNLVSNAIKFTED-GEINVGVTL--------------LDKS---- 355
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
DKV+ L ++V DTG+G+ E +
Sbjct: 356 ---EDKVW----------------------------------LRISVTDTGIGMDEEQRA 378
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
+F F QAD+ST+R YGGTG+GL+ISR L++LM G+IG S G GSTF +T
Sbjct: 379 NLFKAFTQADTSTTRKYGGTGLGLAISRRLIQLMHGDIGVTSAAGQGSTFYIELTLP--L 436
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
++S D Q + + + R L IDD E+ L M V V + + + L
Sbjct: 437 QDSQDSSHHQNL--LKRLQNTRILAIDDNLSTREMLYEMLSAYGMQVKVCRTAEQGLALL 494
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+ Q+ALV W + G+ +Q + L + PK+ + + +
Sbjct: 495 NAAAEAEQPYQVALV-----DW-RLPGMDGIEFCQQVTQNSQLH---DKPKLIIASGYYA 545
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVLIGCF------------QEDPESSKKLQQKRKKPSL 1075
E D+ G+ +TKP + L E P + +Q R+ P
Sbjct: 546 EEMSDQAHRAGVADFITKPYTAATLARSLTSVLSGQQGKLGSEQPSRQQIPEQIRQAP-- 603
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
ILVV+DN +N+ VA L HG V + G+ AVDK+ ++ MD+Q
Sbjct: 604 --------ILVVEDNEINQHVARELLTGHGFQVDIAENGQQAVDKVQ-QQSYAMVLMDIQ 654
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP MDG++A IR +PI+AMTA+ + E+
Sbjct: 655 MPVMDGYKAAETIRQ--------------------QFSYQRLPIVAMTANAMTGDAEKSS 694
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
GM +++KP +++QL + R+ + G
Sbjct: 695 AAGMQGHLAKPIDEDQLLAMLIRWCIPG 722
>gi|404403161|ref|ZP_10994745.1| putative sensor/response regulator hybrid [Pseudomonas fuscovaginae
UPB0736]
Length = 1441
Score = 264 bits (674), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 194/625 (31%), Positives = 301/625 (48%), Gaps = 99/625 (15%)
Query: 594 AINR--IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
INR +Q E + H +++ + RA++A AKS FLA +SHEIRTPMN VLGMLQ++ T+
Sbjct: 750 GINRDITSQRELEAH-LLQARDRADSASAAKSFFLANMSHEIRTPMNAVLGMLQLVQHTD 808
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
L+A Q DY A + K L+ L+ND+LD +KIE+G+L + PF L ++ ++ + +
Sbjct: 809 LNARQHDYVVKAQTAAKSLLGLLNDILDYSKIEAGKLRLDLHPFELEPLMRDLAVVLAGN 868
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
K +E+ + ++P ++GD R +Q++ NL GN++KFTQ +G + VS
Sbjct: 869 QGSKEVEVMFDLDSQLPGSLVGDSLRLQQVLINLAGNALKFTQ-QGQVVVS--------- 918
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
+ +QH G ++L
Sbjct: 919 ------------IRQLQHLE----------------------------------GSVRLR 932
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
+ V DTG+GI E RIF F QA++ST+R +GGTG+GL I + LV LMGGE+ SE
Sbjct: 933 IEVFDTGIGINAEQLQRIFEGFTQAEASTTRRFGGTGLGLVICKRLVGLMGGELQVDSEV 992
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G GS F F + L + P V +R LV DD S+ E+ ++ L
Sbjct: 993 GVGSRFWFDIDLQVAHTEPL----RLSCPGVDS--QMRLLVADDNSMACELLLRTVRALG 1046
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
N A + + +VL+D + D + GL ++ +Q +
Sbjct: 1047 WTADTVNGGTQAVESVRNAQIRG--EPYDVVLMDWRMPDLD-GLSAARLISRQEQS---- 1099
Query: 1012 ISRNLPKIFLLATSISETDRDELKSDG---IVTLLTKPLRLSVLIGCFQEDPESSKKLQQ 1068
P + ++ T+ ++ +G V LTKP+ L Q +++ + +
Sbjct: 1100 ---VPPPMVIMITAYGREVLADVHQEGDAPFVGFLTKPVTPWQLADAVQRAFSATEVMPE 1156
Query: 1069 KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK-LTPPHNF 1127
R P L G ++LVV+DN +NR+VA+ L+ GA V + G V + LT F
Sbjct: 1157 TRPVPVREQRLAGMRLLVVEDNALNRQVADELLRGEGAQVILAEGGLEGVSQVLTATTPF 1216
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD+QMP++DG +AT +IR GL +PI+AMTA+
Sbjct: 1217 DVVLMDIQMPDIDGMEATRRIRQ--------------------QPGLAQLPIVAMTANAS 1256
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQL 1212
+ E C+ GM+D+VSKP + E+L
Sbjct: 1257 SSDREACLAAGMNDHVSKPIDLEEL 1281
>gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
Length = 1035
Score = 264 bits (674), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 203/640 (31%), Positives = 306/640 (47%), Gaps = 121/640 (18%)
Query: 606 HEMMEL-KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAH 664
E++E+ + AE A AKS+FLAT+SHEIRTPMN ++G+ +L+DT L+ Q ++ T
Sbjct: 477 QELLEVARQAAEEASRAKSEFLATMSHEIRTPMNAIIGLTGLLLDTPLNPQQQEFVNTIR 536
Query: 665 NSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724
SG L+ +IND+LD +KIESG+LE E PF+L ++ VL L +S+A ++ +ELA ++
Sbjct: 537 LSGDALLGVINDILDFSKIESGKLELESYPFNLRTCVEEVLDLLASRAAEREVELAAHID 596
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSL 784
VP VIGD GR RQ++ NL+GN+IKFTQ KG++ + VK K +
Sbjct: 597 SGVPCAVIGDMGRLRQVLVNLIGNAIKFTQ-KGNV------------TLYVKAKPM---- 639
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
+S + + + S+ L ++DTG+GI
Sbjct: 640 ------------PMSQYEFMPSYYSY--------------------LFAIQDTGIGISAA 667
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP--------GT--- 893
R+F PF Q D+ST+R YGGTG+GL I + LVE MGG+I S+ GT
Sbjct: 668 GMNRLFKPFSQVDASTTRQYGGTGLGLVICQRLVERMGGQIWVESKKTGESLVVGGTPLA 727
Query: 894 ----------GSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
GS F FT F + +P D R L++DD + ++
Sbjct: 728 VYESIPIAESGSVFYFTARFLLNPNPAPEP-----TDDTCYLENRRVLIVDDNATNRQIL 782
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
+++ +M VA S A + L +D + D ++ + L +
Sbjct: 783 ALQIKKWKMQPLVAESGPSALALLQQQG-----------WVDLAILDLQMPEMDGVTLAR 831
Query: 1004 QRRKGGLEISRNLPKIFL--LATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE-DP 1060
Q R E LP I L L +++E+++ S L++KP++ S L
Sbjct: 832 QIRAAYGE----LPLILLTSLGNTLTESEKALFSS-----LISKPVKQSTLYNALNSLFC 882
Query: 1061 ESSKKLQQK-RKKPSLGHL---LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRA 1116
E K + K PS HL L +ILV +DN VN+ VA L+K G G
Sbjct: 883 EKQKTVSPKPAAAPSFEHLKAELPPLRILVAEDNKVNQMVALRILEKLGYRGDIAANGLE 942
Query: 1117 AVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH 1176
+D + +D MD+QMPEMDG AT ++ ++F +
Sbjct: 943 VLDAVQ-RQPYDVILMDMQMPEMDGITATREV-----------------TQLFQGLKKPR 984
Query: 1177 VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
I+AMTA+ +++ + C+ GMDDYVSKP E+L A+
Sbjct: 985 PRIIAMTANAMESDRQLCLDAGMDDYVSKPIRLEELVRAL 1024
>gi|117618949|ref|YP_856744.1| two-component system sensor protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560356|gb|ABK37304.1| two-component system sensor protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 1060
Score = 264 bits (674), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 206/661 (31%), Positives = 309/661 (46%), Gaps = 126/661 (19%)
Query: 571 WTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA--KSQFLAT 628
W I+A+ ++++ +F AA+ + V + + E + A+ EAA +A K F+A
Sbjct: 307 WGIISATCAILLL------LFGAAVASL--VLSRHREQL---AQQEAARLARVKGDFIAN 355
Query: 629 VSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRL 688
+SHEIRTPMN ++G+ +L LD Q + H +G+ L+ +IND+LD +KIESGRL
Sbjct: 356 MSHEIRTPMNAIMGLAYLLEQGGLDDGQRALVRKIHQAGQALLGIINDILDFSKIESGRL 415
Query: 689 EPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGN 748
E E VPF L +VLD+V ++ S+ K +EL + + ++GD R Q++ NL GN
Sbjct: 416 ELEQVPFSLEEVLDHVAAIMSTCVGNKHLELVVSSAPEQAAHLVGDALRLEQVLLNLTGN 475
Query: 749 SIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWK 808
+IKFT+ R +V+V+ ++
Sbjct: 476 AIKFTE---------------RGEVEVRVEL----------------------------- 491
Query: 809 SWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTG 868
EQ G LL V DTG+GIP E Q IF F QADSSTSR +GGTG
Sbjct: 492 ------------EAEQDGMATLLFRVRDTGIGIPPEQQANIFNAFSQADSSTSRRFGGTG 539
Query: 869 IGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGL 928
+GL+ISR LV LMGG+IG SE G GS F F V + ER + Q+V
Sbjct: 540 LGLTISRRLVNLMGGDIGVTSELGKGSEFWFRVRLEQVERPEAFHERLQHVS-------- 591
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
L+ DD + + + L V S + A +L + L ++ D
Sbjct: 592 -LLIADDNQVTRDTLSMTVGSLGWQSRVVESGEQALHHLLRQGERFDVILLDWIMPGMD- 649
Query: 989 WDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL----KSDGIVTLLT 1044
E + + +QQ R I ++AT+ S+ +EL S+ + +L
Sbjct: 650 -GLETCVAIRQAFEQQERS----------PIIIMATAYSQ---EELMRRPGSEQVDLVLH 695
Query: 1045 KPLRLSVLIGC----FQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGA 1100
KP+ S L E E L+ +++ L G IL+VDD+ +N VA
Sbjct: 696 KPVTGSSLYNAVARLIHEKREHVDLLESGQRRLR----LPGVHILLVDDSDINLEVATRL 751
Query: 1101 LKKHGA-IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
L++ GA ++T +D RA P D MD+QMP MDG++AT ++R L
Sbjct: 752 LQREGAEVITAIDGERALTCLADPAQRIDLVLMDVQMPVMDGYEATRRLRQLP------- 804
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
G P+LA+TA V + E + CGM+D+++KP + EQL + R+
Sbjct: 805 -------------GHKETPVLALTAGVFKDQREAALACGMNDFIAKPLDVEQLIATLLRY 851
Query: 1220 F 1220
Sbjct: 852 L 852
>gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
Length = 762
Score = 264 bits (674), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 203/675 (30%), Positives = 315/675 (46%), Gaps = 135/675 (20%)
Query: 566 KPPVPWTA------INASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAAD 619
+ VPW A +N S+GV+ + A+ H + E A+ A+
Sbjct: 191 RTSVPWYASREFWALNYSVGVLE-------------DAFAERNEREHALQEACKAADIAN 237
Query: 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLD 679
AKS+FLA +SHEIRTPMNGV+GM ++++DTELD Q YA+T SG L+++IND+L+
Sbjct: 238 RAKSEFLANMSHEIRTPMNGVIGMAELILDTELDEDQQMYAETISKSGSALLTIINDILN 297
Query: 680 QAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFR 739
+KIE+G++E + PF+L +++V++L S +A KG+E+ + + +PE GD GR R
Sbjct: 298 FSKIEAGKVELDNAPFNLQVAIEDVVTLLSPRATMKGVEITLRYAPDLPEFFTGDVGRVR 357
Query: 740 QIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLS 799
Q++TN+VGN+IKFT G++ + V A K K Y
Sbjct: 358 QVVTNIVGNAIKFTS-TGYVAIDVSGA-----------------------KGPKGY---- 389
Query: 800 GFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS 859
QLG + V DTG+GIP E IF+ F Q DS+
Sbjct: 390 ------------------------QLG-----IEVLDTGIGIPEERLDDIFSAFEQVDSA 420
Query: 860 TSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYV 919
+R++ GTG+GL+IS L+ LMGG + S G GS F+ + TE + V
Sbjct: 421 ATRSFEGTGLGLAISSRLLSLMGGRVTVKSVAGKGSVFTIRLPLTECD----------AV 470
Query: 920 PDVSE----FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSV 975
P V E F+GL L++DD + + L + A S A L+D
Sbjct: 471 PSVQEGDFDFKGLTCLIVDDLELNRSILSERLTSWGVQCFQAESANRALELLADLRLEKC 530
Query: 976 LPQLALVLIDKDVWD-KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
A++ V D +E+ +H + + + +P I +L++ R
Sbjct: 531 HLDFAILDYQMPVTDGRELAKCIHKIPEFAQ----------VP-IVMLSSVEQAMARSVR 579
Query: 1035 KSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKG--------KQILV 1086
+ + I + KPLR S L + ++ + PS+ L K K++L+
Sbjct: 580 EVENICEIALKPLRASHL-------RQVINRVLNVGELPSIPSLPKSEPEVKTQYKKLLI 632
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
+DN N+ V LK +T G AV+ L D MD+ MP MDG +AT
Sbjct: 633 AEDNRTNQLVVTRMLKNDNYEITIAGNGAEAVE-LFKKDRPDLILMDMMMPVMDGVEATL 691
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
+IR LE +E PI+A+TA+ ++A E+C+ GMDD++SKP
Sbjct: 692 KIRELEAVAHEA-----------------GCPIIALTANALEAHKEKCLAAGMDDFLSKP 734
Query: 1207 FEDEQLYTAVARFFM 1221
+ L + ++ +
Sbjct: 735 INKKSLLETLEKWVI 749
>gi|345876523|ref|ZP_08828291.1| putative L,D-transpeptidase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344226490|gb|EGV52825.1| putative L,D-transpeptidase [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 1675
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 199/609 (32%), Positives = 298/609 (48%), Gaps = 113/609 (18%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS FLA +SHEIRTPMN ++GM + + TEL + QLDY Q +S L+ +IND LD +
Sbjct: 926 KSNFLANMSHEIRTPMNAIIGMSHLALQTELTSKQLDYLQKIQSSSHHLLGIINDTLDFS 985
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+GRLE E F L +VL+N+ +L + KA ++ +EL VP+ +IGDP R Q+
Sbjct: 986 KIEAGRLEIETTHFQLDEVLENLATLLNIKAVERRLELVFERELDVPDRLIGDPLRLGQV 1045
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL N+IKFT+ G + VSV L D +V V GF
Sbjct: 1046 LLNLAQNAIKFTE-SGEVVVSVRLLDRSAQQVRV------------------------GF 1080
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
+ D+G+GI + +F F+QAD STS
Sbjct: 1081 EI-------------------------------RDSGIGIDPQRLPHLFDAFVQADGSTS 1109
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQ--QYV 919
R YGGTG+GLSI + LVELM G++ S G GS F F + F L P+ Q Q+
Sbjct: 1110 RHYGGTGLGLSICKQLVELMQGQLSVESRLGEGSCFRFELAF------GLQPEQQPRQFE 1163
Query: 920 PDVSEFRGLRALVIDD----KSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSV 975
PD + +G+R L++DD +++ A++ R +E+ + A + +L + +
Sbjct: 1164 PD-PDLQGMRVLLVDDNPMVRTVLADMLRSFSFEVEVGANAAEAYELLMG--AGAVGLAK 1220
Query: 976 LPQLALVLIDKDVWD----KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
LVL+D W I V H +KQ+ L + + PK+ L+ E
Sbjct: 1221 PKPFQLVLMD---WHMPPVNGIDAVQH--IKQE-----LALVQQ-PKMILVTAFGREELM 1269
Query: 1032 DELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
+ ++ G+ +L KP S+L + F+E + + R + G LKGK +L+V
Sbjct: 1270 QQSQAAGLDAVLLKPANPSLLFDTIMSVFKESGRGRETVPAARFGATPGR-LKGK-VLLV 1327
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN +N++VA L+ G +V + GRAA+ +L FD MD+QMP MDG++ T Q
Sbjct: 1328 EDNPINQQVALELLQSFGLLVLVAEDGRAALRRLQ-ESAFDLVLMDVQMPLMDGYETTRQ 1386
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR L +P++AMTA + E+C+ GM DY+SKP
Sbjct: 1387 IRQQPE--------------------LQQLPVIAMTAHAMSGDREKCLDAGMSDYLSKPI 1426
Query: 1208 EDEQLYTAV 1216
+ +L +
Sbjct: 1427 DPAKLLATL 1435
>gi|334129301|ref|ZP_08503106.1| Putative Histidine kinase [Methyloversatilis universalis FAM5]
gi|333445527|gb|EGK73468.1| Putative Histidine kinase [Methyloversatilis universalis FAM5]
Length = 1338
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 193/617 (31%), Positives = 295/617 (47%), Gaps = 127/617 (20%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS FLA +SHEIRTPMN +LGM + + E+ Q +Y + AH + + L++++ND+LD +
Sbjct: 612 KSSFLANMSHEIRTPMNAILGMTHLALRDEMTPRQRNYVEKAHRAARGLLAILNDILDLS 671
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIESGRLE E + F L V+D+++ + KA +K +EL +P ++GDP R Q+
Sbjct: 672 KIESGRLEIERIDFRLDAVIDHLVDVIGVKAEEKNLELLFSAEAGIPTALVGDPVRLGQV 731
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL N+IKFT+ +G + ++V L Q + D
Sbjct: 732 LINLASNAIKFTE-RGDVTIAVAL----------------------QSRDDST------- 761
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV-RIFTPFMQADSST 860
++L TV D+G+G+ EAQ+ R+F PF QADSS
Sbjct: 762 --------------------------VELHFTVSDSGIGMD-EAQIARLFQPFTQADSSI 794
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
+R YGGTG+GL+I R LV+LMGG I S PG GS F FT F G + S P W
Sbjct: 795 TRRYGGTGLGLTICRQLVDLMGGRIWVDSAPGRGSVFHFTARF--GLQQSAAPSWPALAG 852
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLA 980
+ S G R LV+DD + EV + + + VA S A L + +
Sbjct: 853 EAS---GTRVLVVDDHAGAREVLATLCRGMGLDTDVAGSADEALERLEHDGA-----RYG 904
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL-------PKIFLLATSISETDRDE 1033
L+LID W K G+ G++++ + +L T++ RD+
Sbjct: 905 LLLID---W-KMPGM------------DGVQLAEEIRRRWPRRGVRLILVTALG---RDD 945
Query: 1034 LKSDG----IVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH------LLKGKQ 1083
+ + +L KP+ S L+ ++ + Q + P + L G +
Sbjct: 946 VATQSAGRQFEAVLHKPVTPSSLLDAVS---QAYGRRQDSARHPGADNGAEAAAGLAGAR 1002
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+V+DN +N+ +A L++ G V GR A+D L FDA MD QMP MDG+
Sbjct: 1003 VLLVEDNELNQELAVDLLERAGIEVKVAGDGRQALDMLAGDSRFDAVLMDCQMPVMDGYT 1062
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT ++R L GL +P++AMTA V++ E+ CGM+D +
Sbjct: 1063 ATRELRALP--------------------GLEALPVIAMTASVLETDRERMRACGMNDCI 1102
Query: 1204 SKPFEDEQLYTAVARFF 1220
KP + Q++ +AR+
Sbjct: 1103 PKPLDVPQMFATLARWL 1119
>gi|398872748|ref|ZP_10628030.1| PAS domain S-box [Pseudomonas sp. GM74]
gi|398201838|gb|EJM88704.1| PAS domain S-box [Pseudomonas sp. GM74]
Length = 1469
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 198/632 (31%), Positives = 301/632 (47%), Gaps = 120/632 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + AE A AKS FLAT+SHEIRTPMN ++GM + + TELD Q +Y + H S
Sbjct: 720 EVQRAREAAEEATRAKSNFLATMSHEIRTPMNAIIGMSYLALRTELDHRQRNYIEKVHRS 779
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+ +IND+LD ++IE+G++ E +PFHL VLD S+ KA KG+EL
Sbjct: 780 AEYLLVIINDILDFSRIEAGKMHLEHIPFHLEAVLDGFASMIGLKAEDKGLELLFSTDAE 839
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P T L+G+ ++ Q V ++L ++ + + VL
Sbjct: 840 LP--------------TALIGDPLRLGQ------VLINLGNNATKFTEQGEIVL------ 873
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V R + E + +L V DTG+G+ E
Sbjct: 874 ---------------GVEQRGAAGE---------------QAQLHFWVRDTGIGMNAEQC 903
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F PF QADS+T+R YGGTG+GL+ISR LVELMGG I SEPG GSTF F V+ G
Sbjct: 904 SRLFEPFSQADSTTTRKYGGTGLGLAISRHLVELMGGRIWVESEPGLGSTFHFEVSL--G 961
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+ P+ + E G R LV+DD + + + + V VA S ++A +
Sbjct: 962 VQRDSHPR---RMVTADELLGSRVLVVDDNASARAILSSMARSFGVEVDVAQSGRVALAM 1018
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG--GLEISRNL-------- 1016
L + VLP LVL+D W R G G+E R +
Sbjct: 1019 LVE-AEAKVLP-YDLVLMD---W---------------RMPGMDGVETVRQMQAAKLAQT 1058
Query: 1017 PKIFLLATSISETDRDELKSDGI--VTLLTKPLRLSVLIGC----FQEDPESSKKLQQK- 1069
P + ++ E R+E GI +LTKP+ S L+ + PE+ + ++
Sbjct: 1059 PSVIMVTAFGREEAREEASRYGIQLPVVLTKPVTPSTLLEALGTVLGKIPEAHTRTGERL 1118
Query: 1070 RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
++ S+ L+G ++L+V+DN +NR +A L+ G + G A+D+L +FD
Sbjct: 1119 GQRASVMASLRGARLLLVEDNELNRELACELLESAGIELCLAVHGAQALDQLARDADFDG 1178
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADVIQ 1188
MD QMP MDG+ AT +IR W +P++AMTAD +
Sbjct: 1179 VLMDCQMPVMDGYTATRKIREQPR---------------------WTTLPVIAMTADAMA 1217
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E+ + CGM+D+++KP + ++ +A++
Sbjct: 1218 GDRERALACGMNDHITKPLNVDDMFATLAKWI 1249
>gi|398951625|ref|ZP_10674198.1| PAS domain S-box [Pseudomonas sp. GM33]
gi|398156269|gb|EJM44692.1| PAS domain S-box [Pseudomonas sp. GM33]
Length = 1470
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 196/617 (31%), Positives = 311/617 (50%), Gaps = 106/617 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A AKS+FLA +SHEIRTPMN ++GM + + T+LD Q +Y H S ++L+ +I
Sbjct: 727 AEEATRAKSEFLANMSHEIRTPMNAIIGMSHLALRTDLDNRQRNYIVKVHRSAENLLGII 786
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+GR++ E +PF L DVL+N ++ +A KG+EL +P
Sbjct: 787 NDILDFSKIEAGRMDLELIPFRLEDVLENFTNVVGLRAEDKGLELLYSTVADLP------ 840
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
T L+G+ ++ Q V +L ++ + + VL
Sbjct: 841 --------TALIGDPLRLGQ------VLANLGNNATKFTEQGEIVLG------------- 873
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
++R + E G+++L V DTG+G+ E RIF F+
Sbjct: 874 ---------IERTGNDE--------------GKVELHFWVRDTGIGMSEEQCQRIFQSFI 910
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QADSST+R YGGTG+GL+IS+ LVE+MGG I S G+GSTF F V+ G + + +
Sbjct: 911 QADSSTTRKYGGTGLGLAISKRLVEMMGGRIWVESTLGSGSTFHFCVSL--GLQAAATAR 968
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
+ + D E G+R LV+DD + E+ + V VA S ++A L+ S
Sbjct: 969 -RMFTAD--ELLGIRVLVVDDNASAREILSGMAHSFGVEVDVAESGRMALRMLAQAEKDS 1025
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
LP LVL+D W + G+ ++Q R ++R P + + ++ DR+EL
Sbjct: 1026 -LP-FDLVLMD---W-RMPGMDGVETVRQMR---CANLART-PSVIM----VTALDREEL 1071
Query: 1035 KSDG------IVTLLTKPLRLSVL---IG-CFQEDPESSKKLQQKRKKPSLGHL-LKGKQ 1083
+ +LTKP+ S L IG F + P++ + ++ ++ + LKG +
Sbjct: 1072 LEQARHQDVHLPVVLTKPVTPSTLLEAIGTVFGKAPQTVTRAHERNEQSADNMARLKGAR 1131
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+V+DN +NR +A L++ G + G+ A+D+L +FD MD QMP MDG+
Sbjct: 1132 LLLVEDNELNRELACDLLQEAGIELELAFDGQQALDRLARDSDFDGVLMDCQMPVMDGYT 1191
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT +IR N +PI+AMTAD + E+ + CGM+D++
Sbjct: 1192 ATRRIRQQSN--------------------FAALPIIAMTADAMAGDRERALACGMNDHL 1231
Query: 1204 SKPFEDEQLYTAVARFF 1220
SKP + + ++ +AR+
Sbjct: 1232 SKPLDVDSMFATLARWI 1248
>gi|334132574|ref|ZP_08506331.1| Putative sensor protein [Methyloversatilis universalis FAM5]
gi|333442540|gb|EGK70510.1| Putative sensor protein [Methyloversatilis universalis FAM5]
Length = 1390
Score = 263 bits (673), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 189/621 (30%), Positives = 289/621 (46%), Gaps = 114/621 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A KS FLA +SHEIRTPMN ++GM ++M TEL Q D+ + S + L+
Sbjct: 645 KELAEEATRMKSDFLANMSHEIRTPMNAIIGMSHLVMKTELTPRQRDFMKKIQLSSQHLL 704
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+IND+LD +KIE+G++ E + F L VLDNV +L K+ KG+EL + VP+ +
Sbjct: 705 GVINDILDFSKIEAGKMTVERIEFELEKVLDNVAALVIEKSAAKGLELMFDIDPAVPDFL 764
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDP R QI+ N N++KFT+ +G I + + + + D D VL
Sbjct: 765 IGDPVRLGQILINYTNNAVKFTE-RGEIVLRLRMIE------DSPDVVL----------- 806
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
L V DTG+G+ E + R+F
Sbjct: 807 --------------------------------------LRFEVRDTGIGLTEEQRARLFE 828
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QADSST+R YGGTG+GL+I R L ELM GE+G S PG GSTF FT R
Sbjct: 829 SFQQADSSTTRKYGGTGLGLAICRKLAELMDGEVGVESVPGQGSTFWFTARLGRSSRQK- 887
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
++ +P + RG R L++DD EV + N ++ + D
Sbjct: 888 ----RELLPH-PDLRGRRVLIVDDNDYAREV-------------IGNLLRSMSFFTEDRI 929
Query: 972 ST-SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL-------PKIFLLA 1023
+ S + ++ + +D + Y+ Q G+E +R + P ++
Sbjct: 930 NAWSAVEEVRRAATEGRPYD------VVYLDWQMPIMDGIEAARQIRALGLAHPPRLVMV 983
Query: 1024 TSISETD-RDELKSDGIVTLLTKPLRLSVLIGCFQE---DPESSKKLQQKRKKPSLGHLL 1079
T+ D + + GI +L KP+ SVL ES P+ L
Sbjct: 984 TAFGREDLLLQAREVGIDDVLIKPVNASVLFDTTMRVLAGDESRVAGTAASDLPAEMAAL 1043
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G ++L+V+DN +NR VA L + G ++ + G A+ ++ H +D MD+QMP M
Sbjct: 1044 AGARVLLVEDNELNREVARELLSESGLVIDIAEDGAVALSRVAGQH-YDLVLMDMQMPVM 1102
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT ++R + L +PI+AMTA+ ++ E C+ GM
Sbjct: 1103 DGLTATRRMRDMPE--------------------LAGLPIVAMTANAMREDVEACLDAGM 1142
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D+++KP + + L+ + R+
Sbjct: 1143 NDHIAKPIDPQDLWAKLLRWI 1163
>gi|334119354|ref|ZP_08493440.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333458142|gb|EGK86761.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 2016
Score = 263 bits (673), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 206/644 (31%), Positives = 298/644 (46%), Gaps = 134/644 (20%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
+ AEAA AKS+FLA +SHEIRTPMN V+GM +L+DTEL A Q D+ +T NSG L+
Sbjct: 1321 RREAEAASRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELKAQQRDFIETIRNSGDTLL 1380
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+IND+LD +KIESG+LE E P L D ++N + + KA+QKGI+L + + P+ +
Sbjct: 1381 SIINDILDFSKIESGKLELEMYPLSLRDCIENAIDQLAVKADQKGIDLGYLIYPQTPKFI 1440
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GD R RQI+ NL+ N IKFT + G + +SV S VD S
Sbjct: 1441 LGDVTRLRQILVNLLNNGIKFT-ETGEVTISVQ-----ASLVD----------------S 1478
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
DK + + N E L I+ ++DTG+GIP R+F
Sbjct: 1479 DKTIS--------------------EPGNLSESLYEIEF--AIQDTGIGIPANRLDRLFK 1516
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMG--------GEIGFVSEP----------GT 893
F Q D+ST+R YGGTG+GL+IS+ L E M G +G P
Sbjct: 1517 SFSQVDASTTRQYGGTGLGLAISKRLSETMNGMMWVESRGHVGGTPSPKWQAGQPHRITM 1576
Query: 894 GSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
GSTF FT+ +P + V E G R L++DD+ ++ Q M
Sbjct: 1577 GSTFYFTIVAPAVAIELGEP-----IEMVPELSGKRLLIVDDQPTNRQILTLQAQSWGMQ 1631
Query: 954 VHVANSMQLACSYL--SDTCSTSVL----PQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007
+ A S A ++L +T ++L PQ+ GL L + Q +
Sbjct: 1632 IRAAQSAVEALNWLESGETFDVAILDMQMPQMH-------------GLTLASAIHQHPK- 1677
Query: 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESS 1063
LP + L + E L S L+KP++ S +LI Q P
Sbjct: 1678 -----CHRLPLVLLTSMGYPEASSSAL-STHFAAFLSKPIKQSQLYQILIHVLQAQP--- 1728
Query: 1064 KKLQQK-----RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
K+QQ L L + IL+ +D++VN++VA L++ G G +
Sbjct: 1729 TKVQQHLPISVEDDMKLAQRLPLR-ILLAEDHLVNQKVALLLLERLGYRADIAANGLEVL 1787
Query: 1119 DKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
+ L +D MD+QMPEMDG +A+ R + E W P
Sbjct: 1788 EALH-RQPYDLVLMDVQMPEMDGLEAS---RRICQE--------------------WPAP 1823
Query: 1179 ----ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
I+AMTA+ +Q + C+ GM+DY+SKP E L A+++
Sbjct: 1824 PRPWIIAMTANAMQGDRQLCLDAGMNDYISKPIRVEALIQALSQ 1867
>gi|406892946|gb|EKD38145.1| Sensor protein, partial [uncultured bacterium]
Length = 866
Score = 263 bits (673), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 203/637 (31%), Positives = 295/637 (46%), Gaps = 116/637 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + K AE+A AKS FLA +SHEIRTPMN V+G+ + + TEL Q DY HN+
Sbjct: 76 ELAQAKEEAESATRAKSDFLARMSHEIRTPMNAVIGLTNLTLKTELTPLQRDYLDDVHNA 135
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIE+GR E F + VL ++ +F KA +KGIEL V
Sbjct: 136 SLHLLGIINDILDFSKIEAGRFELSNQSFSVQRVLGQLVDMFRVKAGEKGIELFFLVDKS 195
Query: 727 VP-EVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VP + + GDPGR QI+ NLV NSIKFT+ G I V V
Sbjct: 196 VPLDGLEGDPGRVGQILINLVANSIKFTE-HGAIIVKVQ--------------------- 233
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
+ +D E G I LL +V+DTG GIP +
Sbjct: 234 ----------------------------REVDELPPAENTGHIGLLFSVQDTGSGIPEDK 265
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
+F PFMQ D S++R + GTG+GL+I + LV LMGG+I + G G+TF FT T
Sbjct: 266 LPELFQPFMQVDGSSTRQHEGTGLGLTICQRLVGLMGGKIWLTTRVGAGTTFYFTAQLT- 324
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
R +P+ + P + L LVIDD +I + R L C
Sbjct: 325 -RRTDREPERR---PVSDRIKNLNVLVIDDSTISCRILREILN------------GFGCM 368
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
+T L + A+ L++K + LVL + E++R + ++ L
Sbjct: 369 ----AATTHSLAE-AVALVEKGGASRPFDLVL--VSGASSASDCFEMTRTVKRLALPTKI 421
Query: 1026 --ISETDRDEL--KSDGIVTLLTKPLRLSVLIG----CFQE-------DPESSKKLQQKR 1070
I DR+ +S+GI L +P+ L+ F E PE S + R
Sbjct: 422 MLIGGCDREPPGGRSNGIDGCLPRPITSFALLAEIGKVFGEVSGYPGSGPERSAESVVAR 481
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPH----- 1125
+ L ++G ++L+V+DN +NR+ A L G V G+ A+ +L
Sbjct: 482 DEIDLKK-IRGARVLLVEDNELNRKFAVALLNIMGLWVEVATNGKEAIARLEEGRRGERS 540
Query: 1126 NFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTAD 1185
+DA MD++MP MDG+ AT IR A+ F +P++AMTA
Sbjct: 541 RYDAVLMDIEMPVMDGYTATRLIR----------------ADSF----FASLPVIAMTAH 580
Query: 1186 VIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+ ++C+ GMDDY+SKP ++ QL + + S
Sbjct: 581 ALTGIEQKCLDAGMDDYLSKPIDEPQLRKILVKHIQS 617
>gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
Length = 1459
Score = 263 bits (672), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 207/635 (32%), Positives = 306/635 (48%), Gaps = 111/635 (17%)
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
L G + +AA I + +M AEAA+ AKS+FLAT+SHEIRTP+N ++GM
Sbjct: 788 LAGSLVYAAGRDITLAKQAQEQMKAAMEAAEAANRAKSEFLATISHEIRTPINAIMGMAG 847
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
+L+DT LDA Q D+ QT + L+SLIND+LD +KIES +LE E PF L +++ +L
Sbjct: 848 LLLDTSLDAQQRDWVQTIRYGSEVLLSLINDILDFSKIESQKLELEETPFSLPQLMEELL 907
Query: 706 SLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
L +++A K +EL +V +P ++GDP R RQI+ NL+ N+IKFT +G + V+V
Sbjct: 908 DLMAAQAQSKDLELVAWVDPALPATLVGDPNRLRQILANLLSNAIKFT-PQGEVVVTVEA 966
Query: 766 AD-DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQ 824
+ D +++V W +F++ D
Sbjct: 967 QEQDPQAQV-----------------------------------QWVSFQVQD------- 984
Query: 825 LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGE 884
TG+GIP E Q R+F PF Q DSS SR YGGTG+GL+IS+ L +LMGG
Sbjct: 985 ------------TGIGIPPEKQDRLFKPFSQVDSSISRQYGGTGLGLAISQRLCQLMGGT 1032
Query: 885 IGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR 944
I S+PG GSTF F + + W PD + G R L+++D + + ++
Sbjct: 1033 IWVQSQPGQGSTFGFRIPLKLPDAA----LWATPTPDPA-LAGQRVLLVEDNASQRQLLA 1087
Query: 945 YHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004
LQ M V ACS +++ + + L L+D + D + GL L L+Q+
Sbjct: 1088 RLLQSWGMQVT-------ACSTVAEAQAIAKAQTFELALVDTSLPDGD-GLALARALQQE 1139
Query: 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED--PES 1062
+ P + L+ + R L S G + L KP+R S L ++ P +
Sbjct: 1140 Q-----------PPLRLV---LLVDRRAALASAGSLPALGKPVRASQLRALLGQEKVPAA 1185
Query: 1063 SKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
+ L+ + S L +ILV +DN VN++V L++ G V G A+ L
Sbjct: 1186 ASHLKPQLPLASRCPL----RILVAEDNPVNQKVIRLMLERLGYQPDIVANGLEALQALQ 1241
Query: 1123 PPHNFDACFMDLQMPEMDGFQATWQIR-HLENEINEQIASGESSAEMFGNVGLWHVPILA 1181
+D MDL MPE+DG AT +IR L E + ILA
Sbjct: 1242 -LRAYDLVLMDLHMPELDGLAATRRIRSELPPERQPR--------------------ILA 1280
Query: 1182 MTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
+TAD S G+D Y++KP + L A+
Sbjct: 1281 LTADAFLESRAAAEAAGVDGYLTKPLQPAVLERAL 1315
>gi|345862744|ref|ZP_08814958.1| signal transduction histidine-protein kinase BarA [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345126086|gb|EGW55952.1| signal transduction histidine-protein kinase BarA [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 1658
Score = 263 bits (672), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 199/609 (32%), Positives = 298/609 (48%), Gaps = 113/609 (18%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS FLA +SHEIRTPMN ++GM + + TEL + QLDY Q +S L+ +IND LD +
Sbjct: 909 KSNFLANMSHEIRTPMNAIIGMSHLALQTELTSKQLDYLQKIQSSSHHLLGIINDTLDFS 968
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+GRLE E F L +VL+N+ +L + KA ++ +EL VP+ +IGDP R Q+
Sbjct: 969 KIEAGRLEIETTHFQLDEVLENLATLLNIKAVERRLELVFERELDVPDRLIGDPLRLGQV 1028
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL N+IKFT+ G + VSV L D +V V GF
Sbjct: 1029 LLNLAQNAIKFTE-SGEVVVSVRLLDRSAQQVRV------------------------GF 1063
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
+ D+G+GI + +F F+QAD STS
Sbjct: 1064 EI-------------------------------RDSGIGIDPQRLPHLFDAFVQADGSTS 1092
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQ--QYV 919
R YGGTG+GLSI + LVELM G++ S G GS F F + F L P+ Q Q+
Sbjct: 1093 RHYGGTGLGLSICKQLVELMQGQLSVESRLGEGSCFRFELAF------GLQPEQQPRQFE 1146
Query: 920 PDVSEFRGLRALVIDD----KSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSV 975
PD + +G+R L++DD +++ A++ R +E+ + A + +L + +
Sbjct: 1147 PD-PDLQGMRVLLVDDNPMVRTVLADMLRSFSFEVEVGANAAEAYELLMG--AGAVGLAK 1203
Query: 976 LPQLALVLIDKDVWD----KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
LVL+D W I V H +KQ+ L + + PK+ L+ E
Sbjct: 1204 PKPFQLVLMD---WHMPPVNGIDAVQH--IKQE-----LALVQQ-PKMILVTAFGREELM 1252
Query: 1032 DELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
+ ++ G+ +L KP S+L + F+E + + R + G LKGK +L+V
Sbjct: 1253 QQSQAAGLDAVLLKPANPSLLFDTIMSVFKESGRGRETVPAARFGATPGR-LKGK-VLLV 1310
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN +N++VA L+ G +V + GRAA+ +L FD MD+QMP MDG++ T Q
Sbjct: 1311 EDNPINQQVALELLQSFGLLVLVAEDGRAALRRLQ-ESAFDLVLMDVQMPLMDGYETTRQ 1369
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR L +P++AMTA + E+C+ GM DY+SKP
Sbjct: 1370 IRQQPE--------------------LQQLPVIAMTAHAMSGDREKCLDAGMSDYLSKPI 1409
Query: 1208 EDEQLYTAV 1216
+ +L +
Sbjct: 1410 DPAKLLATL 1418
>gi|428770660|ref|YP_007162450.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428684939|gb|AFZ54406.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 1244
Score = 263 bits (672), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 198/625 (31%), Positives = 312/625 (49%), Gaps = 120/625 (19%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
+++ + +A+ A AK++FLA++SHEIRTPMNG++GM ++L+DT+L++ Q ++ + ++S
Sbjct: 719 LLKAEKQAKEASEAKTEFLASMSHEIRTPMNGIIGMTELLLDTQLNSEQKNFVEIINHSS 778
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
L+++IND+LD +KIES +++ E F++H+ L++V+SL +A +KGI L IY+++
Sbjct: 779 NTLLTIINDILDLSKIESKKIDLESTTFNIHECLESVISLMELQAEKKGINL-IYIANPQ 837
Query: 728 PEVVI-GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
GD R RQ++ NLV N++KFT +G + V LN
Sbjct: 838 DNYWFKGDVTRLRQVVLNLVSNAVKFTH-QGEVIVR---------------------LNV 875
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ D Y L + VEDTG+GIP + +
Sbjct: 876 ASQELDSCY----------------------------------LKIIVEDTGIGIPQDRR 901
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF--SFTVTFT 904
IF F Q D+ST+R YGGTG+GL+I+R LVELMGG + S G GS F S T+ T
Sbjct: 902 ESIFQAFSQVDASTTRQYGGTGLGLTIARKLVELMGGSLTVSSIVGKGSKFCVSLTLEKT 961
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
E + QQ + RG +AL+I D S+ AE+ L + + +S
Sbjct: 962 NDENDQYLSLKQQ-----NHLRGKKALIIADSSVMAEMLSLQALALGLESQICHSANF-- 1014
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR----NLPKIF 1020
ST L Q+A+V+ D Y L+ R E R NL I+
Sbjct: 1015 -------STDQLHQVAVVIAD-------------YPLQHLNRFDLAESLRLSHPNLALIW 1054
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE-----DPESSKKLQQKRKKPSL 1075
L S+ T + ++ VT++TKP++ L Q+ + S+ + K+ +L
Sbjct: 1055 LTPLSLV-TKENLAQTCPFVTVITKPVKQFQLCDTIQKLLIKNEIVSNNSIFISPKQQNL 1113
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGA-IVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
H K IL+V+DN+VN++VA L K G + + G A+ K+ + FMD+
Sbjct: 1114 IH--KDISILLVEDNLVNQKVARLMLNKLGYRWIEIANNGLEAI-KMIQNKTYQLIFMDM 1170
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP +DG T +IR L N+I + W I+AMTA + + C
Sbjct: 1171 QMPLLDGVATTKEIRKLGNQIQQP----------------W---IIAMTASALSTDRDSC 1211
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARF 1219
++ GM+DY+SKP + + + A+ RF
Sbjct: 1212 LEIGMNDYLSKPVKSDTIIQALKRF 1236
>gi|399994994|ref|YP_006575226.1| two-component sensor histidine kinase/response regulator hybrid
protein [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|398659542|gb|AFO93507.1| putative two-component sensor histidine kinase/response regulator
hybrid protein [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 759
Score = 263 bits (672), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 199/670 (29%), Positives = 315/670 (47%), Gaps = 126/670 (18%)
Query: 569 VPW------TAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAK 622
+PW A+N S+GV+ T ++ + + + E + A+ A+ AK
Sbjct: 194 LPWFASREFRALNFSVGVLEDTF-------------SERDEREYALEEARKAADIANRAK 240
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S+FLA +SHEIRTPMNGV+GM +++++T+LD Q YA+T SG L+++IND+L+ +K
Sbjct: 241 SEFLANMSHEIRTPMNGVIGMAELILETDLDEDQTMYAETISKSGSALLTIINDILNFSK 300
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
IE+G++E E PF+L +++V++L S KA +K +E+ + +PE GD GR RQI+
Sbjct: 301 IEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVTLRYDPSLPECYEGDVGRIRQIL 360
Query: 743 TNLVGNSIKFTQDKGHIFVSVH-LADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
TN+ GN++KFT KG++++ V DD R+ + + V +T +G
Sbjct: 361 TNVAGNAVKFT-GKGYVYIEVSGETDDDRTALRI-----------------SVTDTGAGI 402
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
P ++L RI F F QAD + +
Sbjct: 403 P-------------------EDRLDRI---------------------FNAFEQADGAAT 422
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R Y GTG+GL+IS L+ELMGG I SE G GS F+ + + P + D
Sbjct: 423 RNYEGTGLGLAISTRLLELMGGRISVQSELGKGSVFAIDLPL------RIRPSQPKRAQD 476
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD-----TCSTSVL 976
+F+GLRALV+DD + + L + A S A L D T +L
Sbjct: 477 ARDFKGLRALVVDDLELNRIILTERLATWGVQSVAAGSAHQALELLLDSRHDGTHYDVIL 536
Query: 977 PQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKS 1036
+ +D + I + Y R+LP I +L++ + DR+ +
Sbjct: 537 QDFQMPGMDGKELAERIRDIPEY--------------RDLP-IVILSSVENTIDREAREH 581
Query: 1037 DGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG---HLLKGKQILVVDDNMVN 1093
G + KPLR + L E++ + + + P G ++ ++L+ +DN N
Sbjct: 582 LGRCEVALKPLRAAQLQSVMSRVLETATE-EAPQAVPPQGVETSVVPEVKLLLAEDNRTN 640
Query: 1094 RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLEN 1153
+ V LK V G AV + H+ D MD+ MP DG AT +IR LE
Sbjct: 641 QLVVSRMLKAAPIEVLIAANGEEAV-TMFQEHHPDIVLMDMMMPVKDGIDATAEIRQLEK 699
Query: 1154 EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLY 1213
+ GL P++A+TA+ +Q+ E+C+ GMDD++SKP + L
Sbjct: 700 -----------------DNGLGRCPVVALTANALQSHREECLAAGMDDFLSKPINKKALL 742
Query: 1214 TAVARFFMSG 1223
AV ++ G
Sbjct: 743 GAVGKWVDCG 752
>gi|359459603|ref|ZP_09248166.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 1038
Score = 263 bits (671), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 197/630 (31%), Positives = 309/630 (49%), Gaps = 92/630 (14%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
R ++E E+ K AEAA+ AKSQFLA +SHEIRTPMN V+GM +L++T L+A Q
Sbjct: 265 RQQELEGMVSELQSAKHEAEAANQAKSQFLANMSHEIRTPMNAVIGMTGLLLNTPLEAQQ 324
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
D+ +T +SG L++LIND+LD +KIE+G+L+ E PF + ++ L + +SKA++K
Sbjct: 325 QDFVETIRSSGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASKASEKN 384
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
+ELA ++ P ++GD R RQ++ NL+ N++KFT +G + V V ++ K
Sbjct: 385 LELAYLINPPTPTAILGDITRLRQVLVNLLNNALKFT-GEGEVVVYVS-----SKPIESK 438
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
D E L V+ +E + V+D
Sbjct: 439 DLDAESDLE-----------------VIAEATPYE------------------IQFDVKD 463
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+GIP + R+F F Q D+ST+R +GGTG+GL+IS+ L ELMGG+I SE GST
Sbjct: 464 TGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLAISKQLSELMGGKIWVSSEVSVGST 523
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
FSFT+T +E N + PK V + G + L++DD + E+ Q M
Sbjct: 524 FSFTITASEIP-NYVSPKAASDV----QLAGKQLLIVDDNATNREILSLQAQSWGMLTCA 578
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
S A +L + L ++D + + + G+ L ++ + + L
Sbjct: 579 VKSGIKALEWLQRGVN------FDLAVLDMQMPEMD-GVTLAEKIRAEPN------GKTL 625
Query: 1017 PKIFLLATSISETD-RDELKSDGIVTLLTKPLRLSVLIGCFQE---DP----ESSKKLQQ 1068
P + L +S+ + D R +L KP++ + L + +P E + +Q+
Sbjct: 626 PLVVL--SSLGQDDIRARAGDINFSAILNKPVQQAQLQSVLAQVLGNPLIKVEQAPDVQE 683
Query: 1069 KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
H L+ IL+ +D +VN++VA LK+ G + G ++ L +D
Sbjct: 684 NPTNLGDQHPLR---ILLAEDMVVNQKVALLTLKQLGYRADVANNGLEVIEALE-RQAYD 739
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD+QMPEMDG AT ++ Q S E I+AMTA+ +Q
Sbjct: 740 VVLMDVQMPEMDGLTATREVC--------QRWSPEDRPH-----------IIAMTANAMQ 780
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
E C+ GMD Y++KP +L ++R
Sbjct: 781 GDREMCLDAGMDAYITKPVRIHELRDVLSR 810
>gi|326516584|dbj|BAJ92447.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 249
Score = 263 bits (671), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 132/233 (56%), Positives = 166/233 (71%), Gaps = 15/233 (6%)
Query: 259 RSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSM 318
R+ K + +V V L ++ + L L+ ++ +E + MC+ERARMLQDQF VS+
Sbjct: 32 RAKSKLSAAVAMVGVALALSGVLVLHRSLRHNALVKAEEGIVCMCEERARMLQDQFAVSV 91
Query: 319 NHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEK 378
NHVHALAILV+TFH+ K P A+DQ TF +YT RT+FERPL SGVAYA +V+H++RE FE+
Sbjct: 92 NHVHALAILVATFHYEKQPPALDQDTFADYTARTSFERPLLSGVAYAQRVMHADRETFER 151
Query: 379 QHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRE 438
Q GW IK M+ E P+P QDEYAPVI+SQETVS+I +DMMSG+EDRE
Sbjct: 152 QQGWIIKTMKHE--------------PSPAQDEYAPVIYSQETVSYIEGLDMMSGEEDRE 197
Query: 439 NILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLG 491
NILR+RA+GK VLT PF+L+ SNHLGVVLTF VY DLP DA E R+ AT G
Sbjct: 198 NILRSRATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPPDAKVEDRVAATAG 249
>gi|428305786|ref|YP_007142611.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
gi|428247321|gb|AFZ13101.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Length = 1034
Score = 263 bits (671), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 191/637 (29%), Positives = 307/637 (48%), Gaps = 101/637 (15%)
Query: 588 GHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
+ I R ++ + E + AE+A KS FLA +SHEIRTPMN V+GM +L
Sbjct: 342 AQLLQVEIRRAEELAERNLVLEEARQAAESAVKMKSAFLANMSHEIRTPMNAVIGMTGLL 401
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
++TE+ + Q D+ +T S +L+++IN++LD +KIE+G + E + F LH ++ V L
Sbjct: 402 LETEVTSEQKDFLETIRISADNLLTIINEILDFSKIEAGEMHLETINFGLHQCVEEVAEL 461
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
++ A +KGIE+ +V +P GDP R RQI+TNLV N+IKFT + G + + V+L
Sbjct: 462 LATSAQEKGIEITTFVPANIPVTFKGDPTRLRQILTNLVSNAIKFT-EVGGVTIYVNLQS 520
Query: 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR 827
E S+++ H
Sbjct: 521 -------------ETSVDATMH-------------------------------------- 529
Query: 828 IKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF 887
V+DTG+G+ Q ++F F QAD+ST+R YGGTG+GL+I + LVELMGGEIG
Sbjct: 530 ----FGVKDTGIGLSPAQQKKLFQSFSQADASTTRKYGGTGLGLAICKALVELMGGEIGI 585
Query: 888 VSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHL 947
S G G+TF FT+T ++ + P+ + P + + +R LV++D +H
Sbjct: 586 TSAQGEGATFWFTITLN--KQPTTQPQNLEN-PALDRLKKVRLLVVEDFLDTRSAIAHHT 642
Query: 948 QRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007
M V +A + A L ++ Q A LID ++ D + G L +K +
Sbjct: 643 TAWGMQVDLAENGATAIQDLQQAVDSNNPYQFA--LIDLNLPDMD-GETLSKTIKADPKL 699
Query: 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQ 1067
++ I ++ + E + +L + IV L KP++ S ++ S + +
Sbjct: 700 AKTQL------ILMIPVNQLEQAK-KLLNVTIVDYLIKPVKTSKMLNSLVAATTISNQAE 752
Query: 1068 QKRKK-----PSLGHLLKGKQ-------ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
Q + S + K Q I++ +DN VN++VA LK G + G+
Sbjct: 753 QSVNQHITTSKSFTTIDKKTQNRRSQVKIILAEDNKVNQKVALNQLKNLGYAADVANNGQ 812
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
+++L N+D MD QMP +DG++AT +IR E G++
Sbjct: 813 EVLEQL-DKQNYDLVLMDCQMPILDGYEATAEIRRQE---------GKNK---------- 852
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
H I+A+TA ++ ++C+ GMDD++SKP E L
Sbjct: 853 HTIIIALTASAMKEDLDKCIASGMDDFLSKPVRKEAL 889
>gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
Length = 1436
Score = 263 bits (671), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 190/623 (30%), Positives = 307/623 (49%), Gaps = 105/623 (16%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ KA+AE A KS FLA +SHEIRTPMN ++G+ + + T+L Q DY HN
Sbjct: 688 EELRLAKAKAEEATQMKSMFLANMSHEIRTPMNAIIGLSHLALKTQLTPKQRDYIGKVHN 747
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
+G L+++IND+LD +KIE+G+L+ E V F L +V+ +V +L + KA++KG+E +V+
Sbjct: 748 AGTSLLAVINDILDFSKIEAGKLDLEVVDFKLDEVITSVTTLTAQKAHEKGLEFLAHVTP 807
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+PE ++GDP R QI+TN V N++KFT+ +G I +++ L + K+ +K V + +
Sbjct: 808 GIPEFLLGDPLRLGQILTNFVNNAVKFTE-RGEIRLNIELIERTGEKLQLKFSVRDTGIG 866
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
++ K++ + F D + T
Sbjct: 867 MTTEQAAKLF---------------QPFTQADMSTT------------------------ 887
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
R +GGTG+GL+I R LVELMGG I SEPG GSTF FTV +
Sbjct: 888 ----------------RKHGGTGLGLTICRRLVELMGGRIWLESEPGAGSTFYFTVWLSI 931
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
G R + +P+ + LR LV+DD E+ L + V V S + A +
Sbjct: 932 GNRQGTG----KIIPE--KLAELRVLVVDDNPAACEILEEPLANIVKRVDVVASGKDAIT 985
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL--- 1022
+ ++ ++ +D + + GL +K E R+ P I L+
Sbjct: 986 AVKQKDASE---PYDILFMDWRMPGMD-GLQTSRFIKSD------ETLRHQPHIVLVTAF 1035
Query: 1023 ATSISETDRDELKSDG-IVTLLTKPLRLSVLIGCFQE-DPESSKKLQQKRKKPSLGHLLK 1080
+ + L+ DG +V +T+ + + +L+ F E E S +++++ L+
Sbjct: 1036 GREEVREEAERLQLDGFLVKPVTRSMTVDMLVNVFSEASQEISVSVEEEQAAK-----LR 1090
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL---TPPHNFDACFMDLQMP 1137
G +IL+ +DN +N+++A L+ GA V + G AV + P FD MDLQMP
Sbjct: 1091 GARILLAEDNDINQQIAVELLEGAGATVNVANNGLEAVGIVFNGPQPPPFDVVLMDLQMP 1150
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EMDG+QAT ++R + + A+ +PI+AMTA ++C+
Sbjct: 1151 EMDGYQATAKLRA-----DPRFAT---------------LPIIAMTAHATIEERQRCIAA 1190
Query: 1198 GMDDYVSKPFEDEQLYTAVARFF 1220
GM+D++SKP + L+ V RF+
Sbjct: 1191 GMNDHISKPIDPANLFETVGRFY 1213
>gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
OS217]
gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217]
Length = 1233
Score = 263 bits (671), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 198/614 (32%), Positives = 291/614 (47%), Gaps = 101/614 (16%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E K AE A++ KS+FLA +SHEIRTPMN ++GMLQ+ T+L Q DY A S
Sbjct: 708 LLEAKHDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTLQQQDYLNKAGFSA 767
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+G+LE E VPF L VLD+V+ + + A +KG+EL ++
Sbjct: 768 ESLLRIINDILDFSKIEAGKLELESVPFSLEKVLDHVIDMNALSAQEKGVELLLFSPLTT 827
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
+ GDP R Q++ NL+ N++KFTQD G I + DV ++ + SL
Sbjct: 828 GLTLKGDPLRLGQVLVNLLSNAVKFTQD-GEIELGCE---------DVGERDTQISL--- 874
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
K W V DTG+GI E Q
Sbjct: 875 --------------------KFW-----------------------VRDTGIGISREQQA 891
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
+F F QAD ST+R YGGTG+GLSIS+ LV +MGG + SEP GSTFSFT++F +
Sbjct: 892 NLFDAFSQADGSTTRQYGGTGLGLSISKHLVSMMGGNLSVESEPQQGSTFSFTLSFDIAK 951
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
P+ VP + L +LV+DD ++ L+ V+ A A L
Sbjct: 952 EL---PQQPLVVP--KQLNNLTSLVVDDNPSALQIYSTLLRDFSFGVNTATGGAEAIERL 1006
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+L + ++ + K + M+ R K P I ++ +
Sbjct: 1007 LQQDIDLLLLDWMMPVVSGGMVIKAV----DEMIADGRLK-------KRPVIIIMTAYST 1055
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPSLGHLLKGKQ 1083
E EL +L KP + S L IG F + K++Q+ + L+
Sbjct: 1056 EPLNLELDKYEYQAVLQKPFKASSLFDEIIGAFA----APAKIKQEIAEQVEPQPLQSGL 1111
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
IL+V+DN +N++VA LK G V D G+ A+D L FDA MD+QMP MDG
Sbjct: 1112 ILLVEDNFINQQVASELLKSAGYDVVIADNGQIALD-LVAKQEFDAVLMDIQMPVMDGLT 1170
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
A +R E +Q+ PI+AMTA + E+ + GM+ ++
Sbjct: 1171 AAKILR--ETYSTQQL------------------PIIAMTAHAMSGDKEKSLNAGMNAHI 1210
Query: 1204 SKPFEDEQLYTAVA 1217
+KP +L+ +A
Sbjct: 1211 TKPIVLTELFETLA 1224
>gi|300867388|ref|ZP_07112044.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300334639|emb|CBN57212.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1120
Score = 263 bits (671), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 203/666 (30%), Positives = 310/666 (46%), Gaps = 124/666 (18%)
Query: 570 PWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATV 629
PW A + +G +V+ V + +E++E + A A KSQFLA +
Sbjct: 379 PWYAPDGEVGGIVL-----------------VSDRINELVEAREAAIEASRVKSQFLANM 421
Query: 630 SHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLE 689
SHEIRTPMNGVLGM Q+L+ L+A +YAQT + S + L+S+IND+LD +KIE+G +
Sbjct: 422 SHEIRTPMNGVLGMAQLLLRLSLEAKPREYAQTIYRSAEHLLSVINDILDFSKIEAGEMR 481
Query: 690 PEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNS 749
E + F L +++++ + + A +KG+EL + + VP + GDPGR +QI+ NLV N+
Sbjct: 482 LETLDFDLDVCIESMVEMVVATAEEKGLELNVLIESSVPRQLQGDPGRLKQILLNLVNNA 541
Query: 750 IKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKS 809
IKFT D+G + V V L VDR
Sbjct: 542 IKFT-DRGQVLVRVSLKSS----------------------------------TVDR--- 563
Query: 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGI 869
KL+ +V D+G+GI E Q ++F F Q D S +R YGGTG+
Sbjct: 564 -------------------KLIFSVRDSGIGISPEGQKKLFQSFSQVDGSPTRQYGGTGL 604
Query: 870 GLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLR 929
GL I + LVE+MGGEIG + G GS F FT+ + P+ + S+ G R
Sbjct: 605 GLVICKQLVEMMGGEIGVRTSVGKGSNFWFTIPL------QMQPQPVERSRG-SQIAGKR 657
Query: 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVW 989
LV+ ++ V R +A + C+ D + + + A ++
Sbjct: 658 LLVVSHSAVTRAVAR----------AIAEARGAYCTEAEDARTVLAVLEEANSGARRE-Q 706
Query: 990 DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR---DELKSDGIVTLLTKP 1046
+ + L L Q +G R+L LL S DR + L S G + L KP
Sbjct: 707 EHYTAVFLDLQLPQLDTQGFAAFVRSLLVKPLLIGVTSLRDRHKAEALCSLGAASYLIKP 766
Query: 1047 LRLSVLIGCFQEDPESSKKLQQK---------RKKPSLGHLLKGKQ----ILVVDDNMVN 1093
LR S C P ++K+ ++K KP+ L Q IL+ +D+ +N
Sbjct: 767 LRASQF--CDSLLPATTKEEEEKFSYVTSQDNSTKPNYQLPLSNSQLSVKILLAEDHYIN 824
Query: 1094 RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLEN 1153
++V L G C G+ A+ K+ +D MD QMP +DG+ T ++R E
Sbjct: 825 QQVILNQLMVLGYQADCAANGQEAL-KMLELQTYDVVLMDCQMPILDGYATTKKLR--EQ 881
Query: 1154 EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLY 1213
E N++ E+SA ++A+TA + E+C+ GMDDY+SKP + E L
Sbjct: 882 EANKE---RENSAH--------KTVVIALTAHAMPGEREKCLAAGMDDYLSKPVDIEDLA 930
Query: 1214 TAVARF 1219
+ ++
Sbjct: 931 AILKKY 936
Score = 44.3 bits (103), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 38/139 (27%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK--LTPPHN-------------- 1126
++L+VDD+ V+R ALK G V + G +A + L HN
Sbjct: 6 KVLIVDDDEVDRMAVRRALKIAGVRVEIAEAGGSAEARVLLLAAHNELTNSAEEMASAKP 65
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
FD F+D ++P+ DG + IR G+ +P++ +T
Sbjct: 66 FDCAFLDYRLPDGDGLKLVKTIRE---------------------AGI-KIPLIVLTGQG 103
Query: 1187 IQASNEQCMKCGMDDYVSK 1205
+ + MK G DY++K
Sbjct: 104 DEQIAVELMKAGASDYIAK 122
>gi|411117040|ref|ZP_11389527.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
gi|410713143|gb|EKQ70644.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
Length = 1270
Score = 262 bits (670), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 198/646 (30%), Positives = 311/646 (48%), Gaps = 128/646 (19%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
Q+ E+ + +AE A KS FLAT+SHEIRTPMNGVLGM +L+DT+L+A Q D+
Sbjct: 567 QLAQRNQELERARQQAERASQMKSTFLATMSHEIRTPMNGVLGMTSLLLDTQLNAEQRDF 626
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
+T SG+ L++LIN +LD +K+E+G +E E + F L+ ++ V L ++ A+ KG+EL
Sbjct: 627 VETIRCSGETLLTLINQILDFSKLEAGEMELETLEFDLNTCIEEVADLVAATAHAKGLEL 686
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
A V +P + GD R RQ++TNLV N++KFT +G + + L +++ D +
Sbjct: 687 ATLVYRNLPTRLKGDVSRLRQVLTNLVSNAVKFTA-QGEVVIQAAL----KAETDTTATI 741
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
+ F V D TG+
Sbjct: 742 M--------------------FSVTD-------------------------------TGI 750
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GIPLEAQ ++F PF Q D+ST+R YGGTG+GL+IS+ LVELMGGEIG S G + F F
Sbjct: 751 GIPLEAQRKLFKPFSQVDASTTRRYGGTGLGLAISKQLVELMGGEIGVDSTEGKEARFWF 810
Query: 900 TVTFTEGERN---SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
T+TF E + N +L P P++S+ ++ALV+DD + +V + + M V
Sbjct: 811 TLTF-EKQVNLPAALAPS--ATAPNLSQ---IKALVVDDHTTNRKVLCHQISAWGMRVDE 864
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
A + + A L D +A++ + D E+ L +K + L+ +R
Sbjct: 865 AANARTALKMLRDQAIAGTPYHVAILDMQMPEMDGEM---LGACIKSDQL---LQTTR-- 916
Query: 1017 PKIFLLATSISE--TDRDELKSDGIVTLLTKPLRLSVLIGCFQE---------------- 1058
++ TS++ R+ L+ G L KP++ S L+ C
Sbjct: 917 ---LIMMTSLNHWGGARNALQL-GFSAYLVKPVKQSRLLDCILNALTNKIEGFEPSVNTS 972
Query: 1059 -----------DPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAI 1107
D + + SL + ++L+V+DN++N++V LK G
Sbjct: 973 SVALLPTSLPLDSSTELAITSDSSFSSLHNQQPRLKLLLVEDNVINQKVTLNQLKNLGYK 1032
Query: 1108 VTCVDCGRAAVDKLTP-PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSA 1166
G+ A+ L P +D MD QMP +DG+ T +IR +E
Sbjct: 1033 ADVAANGKEALQMLEQIP--YDLILMDCQMPVLDGYSTTQEIRRIEGTDR---------- 1080
Query: 1167 EMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
H ++A+TA+ ++ +C++ GMDDY+SKP ++L
Sbjct: 1081 ---------HTIVVALTANALREDRARCIQAGMDDYLSKPILKDKL 1117
>gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii]
gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
Length = 954
Score = 262 bits (670), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 195/637 (30%), Positives = 304/637 (47%), Gaps = 95/637 (14%)
Query: 593 AAINRIAQ-VENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
+A+++ AQ +E E+ E + +A A AK+ FLAT+SHEIRTPMNGVLGM +L+DT
Sbjct: 389 SALSKAAQDLEWKNWEISEARDQAVKAGQAKTDFLATMSHEIRTPMNGVLGMTTLLLDTA 448
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
L Q DY QT +S + L+ +IND+LD +KIE+G+ E +PF L +++ L + +
Sbjct: 449 LSTEQRDYLQTLRHSSESLLRIINDILDFSKIEAGKFTIEQIPFDLRMTIEDTLDMLAPA 508
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
+ + +EL + + P VIGDPGR RQ++TNL+GN+IKFT+ +G + + V D+ +
Sbjct: 509 SQDRHLELVGLIDAQTPRTVIGDPGRIRQVLTNLLGNAIKFTE-QGEVLIQVLPLDEDPT 567
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
V ++ +V++ + G + K ++ F D++
Sbjct: 568 FVMLRFEVIDTGI---------------GLSPEAQAKMFQAFTQADSS------------ 600
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
T+R YGGTG+GL+I + LVELMGGEIG S P
Sbjct: 601 ----------------------------TARKYGGTGLGLTICKRLVELMGGEIGLQSMP 632
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G G+ FTV F + ++ P + +F G R ++DD + +YH+
Sbjct: 633 GLGTRIWFTVRFAL-QADAAPPVMPPLTSN--DFAGRRVCLVDDNPTNRSLLQYHVSGWN 689
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
M H +++ + + + L +ID + D GL L ++K+ +
Sbjct: 690 M--HHESAVDAPSALALLRQAAADGTPFDLAIIDIHMPDIG-GLQLCRLIKE-------D 739
Query: 1012 ISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF-----QEDPESSKKL 1066
+ + +L D K G L KP+R L C ++D + +
Sbjct: 740 PAIRATHLIVLTAFGQRGDSIAAKEAGASAYLPKPVRERQLADCIRLILGRKDSDETSTP 799
Query: 1067 QQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN 1126
R S +++LVVDDN VN++VA L+K G V G A+ + H
Sbjct: 800 LITRHTMSEAQAQAAQRLLVVDDNPVNQKVALKMLEKLGYRVDVAGNGMEALAAVC-RHQ 858
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
+ FMD QMPE+DG + T IR S E G H+PI+AMTA+
Sbjct: 859 YPLVFMDCQMPELDGLETTRLIR---------------SQEQAGT----HLPIIAMTANA 899
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
+ E C+K GMDD++SKP +QL ++R+ S
Sbjct: 900 MAGDRENCLKAGMDDFISKPIVPDQLREILSRWLPSA 936
>gi|71905650|ref|YP_283237.1| PAS [Dechloromonas aromatica RCB]
gi|71845271|gb|AAZ44767.1| PAS protein [Dechloromonas aromatica RCB]
Length = 1439
Score = 262 bits (670), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 188/605 (31%), Positives = 293/605 (48%), Gaps = 108/605 (17%)
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FLA +SHEIRTPMN ++GM + + TEL++ Q +Y N+ K L+ +IND+LD +KIE
Sbjct: 717 FLANMSHEIRTPMNAIIGMTHLALQTELNSRQKNYLTKVDNAAKGLLGIINDILDLSKIE 776
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G + E PF L L+ + + S KA ++G+EL ++ VP+ +IGD R Q++ N
Sbjct: 777 AGMMHFEHAPFSLDASLERLSDMCSLKARERGLELLYDIAPEVPDQLIGDSLRLGQVLLN 836
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVV 804
LVGN+IKFT+ G I V+V L + ++VD+ GF V+
Sbjct: 837 LVGNAIKFTE-AGEITVTVKLLANRENEVDL------------------------GFEVI 871
Query: 805 DRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTY 864
D TG+G+ +E Q ++F+ F QAD+ST+R Y
Sbjct: 872 D-------------------------------TGIGMNVEQQSQLFSAFTQADTSTTRKY 900
Query: 865 GGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE 924
GGTG+GLSI + +VEL GG IG S+PG GS F+F + F + P+ + +P+
Sbjct: 901 GGTGLGLSICKRIVELQGGSIGVSSQPGIGSRFTFQLQFGRATEQTGTPR-RIGLPN--- 956
Query: 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLI 984
LRAL++DD EV + L + H S A L+ T L++I
Sbjct: 957 --NLRALIVDDSHGACEVFLHMLTVFGIDCHAVRSAPAALLELAAAAETG--QAYGLLII 1012
Query: 985 DKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKS----DGIV 1040
D + D + G+ L + Q N P+ + D +EL + +
Sbjct: 1013 DWKMPDMD-GVELVEKISQS----------NGPERTAAIVMATAYDHEELLAALGKHPVG 1061
Query: 1041 TLLTKP-----LRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRR 1095
+L+KP L S+++ + E + ++ L G+ IL+V+DN VNR
Sbjct: 1062 AILSKPATPSSLFDSIMVALHR---EPTTQMVPNITPTMLSEQFAGRHILLVEDNEVNRE 1118
Query: 1096 VAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEI 1155
+AE L G +V + G+ A+D++ + +D MD MP MDG+ AT IRH
Sbjct: 1119 LAEEMLGNIGLLVDTAENGQQAIDRIR-QNAYDLVLMDCHMPVMDGYTATEYIRH----- 1172
Query: 1156 NEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTA 1215
+ L +PI+AMTA+ + + E C+ GMDD++ KP + L+
Sbjct: 1173 ---------------ELKLPQLPIIAMTANALHSDREHCLAVGMDDHIPKPIDVAVLHAT 1217
Query: 1216 VARFF 1220
+ R+
Sbjct: 1218 LLRWL 1222
>gi|452962752|gb|EME67859.1| sensor protein barA [Magnetospirillum sp. SO-1]
Length = 1606
Score = 262 bits (670), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 202/621 (32%), Positives = 305/621 (49%), Gaps = 124/621 (19%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A K+ FLA +SHEIRTPMN ++GM + + TE+ Q DY + SG+ L+ +I
Sbjct: 960 AEDAARTKADFLANMSHEIRTPMNAIIGMAHLALKTEMTPRQKDYVRKIQQSGQHLLGII 1019
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+G+L E HL VLDNV +L S KA+ KG+EL + VP
Sbjct: 1020 NDILDFSKIEAGKLAVENCEVHLDKVLDNVSNLVSEKASAKGLELLFDIGPGVP------ 1073
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
+L G+S++ Q VL + + ++ V
Sbjct: 1074 --------LDLTGDSLRLGQ------------------------VL------INYANNAV 1095
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
T +G VV ++L++ + L V DTG+G+ E + R+F F
Sbjct: 1096 KFTETGEIVV-------AVRLLEDCGP-----DVLLRFEVRDTGIGLTGEQKARLFQSFQ 1143
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE-RNSLDP 913
QAD+ST+R +GGTG+GL+ISR L ELMGGE+G S PG GSTF FT +G+ R L P
Sbjct: 1144 QADTSTTRKFGGTGLGLAISRKLAELMGGEVGVDSVPGQGSTFWFTARLGKGKPRAPLLP 1203
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
+ +E RG R LV+DD E A V M A S+ D +
Sbjct: 1204 E--------AELRGRRMLVVDDN--------------ENARAVLAEMLGAMSFEVDAVDS 1241
Query: 974 SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL-------PKIFLLATSI 1026
+ A+ I V D+ +V ++ Q GLE++ L P ++ T+
Sbjct: 1242 G---EAAIAAIRDAVLDRPYEVV--FLDWQMPDLDGLEVAERLHAIRLPFPPHLIMVTAY 1296
Query: 1027 S--ETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPS--LGHL 1078
E R +D I +L KP+ + L + F D S+++ + + P+ LG L
Sbjct: 1297 GREEVMRGAQAAD-IGEVLIKPVNPAALFDSIMRVFAADDRRSEEVPEA-EGPTGDLGGL 1354
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L G ++L+V+DN +N+ VA L+ G +V + GR AVDK+ +D MD+QMP
Sbjct: 1355 L-GVRVLLVEDNELNQEVAGEILRDAGLVVEIAENGRIAVDKVM-AGAYDMVLMDMQMPV 1412
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG AT +IR L G +PI+AMTA+ +QA E+C++ G
Sbjct: 1413 MDGVTATREIRRL---------------------GFGDLPIIAMTANAMQADKEKCLEAG 1451
Query: 1199 MDDYVSKPFEDEQLYTAVARF 1219
M+D+++KP + + ++ + ++
Sbjct: 1452 MNDHLAKPIDPDAMFATLLKW 1472
>gi|196230968|ref|ZP_03129828.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
gi|196224798|gb|EDY19308.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
Length = 977
Score = 262 bits (670), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 196/605 (32%), Positives = 288/605 (47%), Gaps = 108/605 (17%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+FLA +SHEIRTPMNGV+GM +L+DT L+ Q D+A+T S + L+++IND+LD +
Sbjct: 344 KSRFLANMSHEIRTPMNGVIGMTNLLLDTSLNNEQRDFAETIRASAEGLLTVINDILDFS 403
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G++ E + F+LHDV+++ L L + +A+ KGIELA ++ VP + GD GR RQ+
Sbjct: 404 KIEAGKMTFEDLDFNLHDVVESTLELLAKQAHTKGIELAGFIEPNVPTRLRGDAGRIRQV 463
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+TNLV N+IKFTQ G + + DD S+ ++ +V + + ++
Sbjct: 464 LTNLVSNAIKFTQ-TGEVTIRTSCLDDQGSQCQLRLQVSDTGVGISPEAQKNLF------ 516
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
E F D + T
Sbjct: 517 ---------EAFNQADASTT---------------------------------------- 527
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R +GGTG+GL+I + LVE M G IG S PG GS F FT+ ++ Q P+
Sbjct: 528 RRFGGTGLGLAICKQLVEKMHGCIGLESTPGKGSIFWFTLLLSK----------QDVPPE 577
Query: 922 VSEF-RGL---RALVIDDKSIRAEVTRYHLQRLEMA---VHVANSMQLACSYLSDTCSTS 974
+S GL R L+IDD + R + + L +M VH A++++ +L +
Sbjct: 578 ISTGDHGLINQRVLIIDDNAPRGRILQERLVAWKMRSELVHEADTLR----HLR--VAAQ 631
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
+ +ID D+ + + L L +K + G ++ LL D EL
Sbjct: 632 ERDPYPITIIDMDLPNAD-RLALVREIKSDPQIAG-------TRVILLTEFGRRLDFAEL 683
Query: 1035 KSDGIVTLLTKPLRLSVLIGCFQED-PESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVN 1093
+ GI KP+R S L C ES+ +++ H + ++ILV +DN VN
Sbjct: 684 NTAGIFDSRFKPVRQSALFDCLTNALLESAPRVRTPISMSPNPHSFRPERILVAEDNAVN 743
Query: 1094 RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLEN 1153
+RVA G L+K G G A+ L+ +D MD MPEMDG++AT IR E
Sbjct: 744 QRVALGQLRKLGYRADVAGNGFEALQALSQIA-YDIVLMDCHMPEMDGYEATLAIRQREK 802
Query: 1154 EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLY 1213
G W I+AMTA+ I EQC+ GMDDYVSKP L
Sbjct: 803 ----------------GTQRAW---IIAMTANAISGDREQCLAAGMDDYVSKPVRTADLA 843
Query: 1214 TAVAR 1218
A+ R
Sbjct: 844 DALER 848
>gi|113474748|ref|YP_720809.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
IMS101]
gi|110165796|gb|ABG50336.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
IMS101]
Length = 1384
Score = 262 bits (670), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 208/647 (32%), Positives = 327/647 (50%), Gaps = 107/647 (16%)
Query: 612 KARAEA--ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
KAR EA A AKS+FLAT+SHEIRTP+N V+GM +L+DT L + Q ++ +T +SG
Sbjct: 656 KARDEALAATRAKSEFLATMSHEIRTPINAVIGMTGLLLDTSLKSDQTEFVETIRSSGDA 715
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L++LIND+LD +KIES + + E PF L L+ + L +K +++G+EL ++ P
Sbjct: 716 LLTLINDILDFSKIESEKFDLEEHPFDLETCLEESIDLLVAKVSEQGLELVYFIDPETPT 775
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
+VIGD R RQI+ NL+ N++KFT D G + VSV K+++++ V ++ ++
Sbjct: 776 IVIGDVTRVRQILVNLLSNAVKFTSD-GEVLVSVS-----GRKLEIEENVQNLAVENI-S 828
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
+SD D W ++E + +V+DTG+GIP R+
Sbjct: 829 ESD----------TCDIWPAYE------------------IQFSVKDTGIGIPANRMNRL 860
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGE-----IGFV--SEPGT--------- 893
F F Q DSST+R YGGTG+GL IS+ L E+MGG+ +G V + P T
Sbjct: 861 FKRFSQVDSSTNREYGGTGLGLVISKRLAEMMGGQMWVESMGVVGGNPPATYRLPDLYEH 920
Query: 894 --------GSTFSFTVTFTEGERNSLDPKWQQ--YVPDVS-EFRGLRALVIDDKSIRAEV 942
GSTF FT+ ++ ++ K+ Q YV + R L++DD S +
Sbjct: 921 SAAVNEKSGSTFYFTIV-SKCSIQTVQNKFIQTNYVNGSQHKLVDKRILIVDDNSTNRTI 979
Query: 943 TRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLK 1002
+ M V A + A ++ V +ID + + + GL L
Sbjct: 980 LLRQTESWGMIVRTAENANRALELIATENKFDV------AIIDMKMPEID-GLSLG---- 1028
Query: 1003 QQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLS----VLIGCFQ 1057
++ I +NLP I L + E + SD ++ +++ KP++ S L+ F
Sbjct: 1029 --KKITEYPIYQNLPIILLSSLGQQEINF----SDKLLGSVINKPIKQSQLYEALLNIFS 1082
Query: 1058 -EDPESSKKLQQKRKKPSLGHLLKG--KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCG 1114
+D + K KR ++ L K +IL+ DD++VN++VA L++ G G
Sbjct: 1083 GQDVKVKFKNNNKRNYQTIPVLAKELPLRILLADDHLVNQKVALRILQRMGYRADLASNG 1142
Query: 1115 ---RAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGN 1171
AAV +L +D MD+QMP MDG +A+ RH++ E + S +
Sbjct: 1143 LEVLAAVFRLP----YDVVLMDVQMPLMDGLEAS---RHIQREYENATKYSQKSPQK--- 1192
Query: 1172 VGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
I+AMTA+V+Q E+C+ GMDDY+SKP + E+L A+++
Sbjct: 1193 ----RPRIIAMTANVMQGYREECIAAGMDDYISKPIQIEELIKALSK 1235
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
H L K+IL+VDDN NR + + G IV + A++ + + FD +D++M
Sbjct: 960 HKLVDKRILIVDDNSTNRTILLRQTESWGMIVRTAENANRALELIATENKFDVAIIDMKM 1019
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PE+DG +I + ++ N+ PI+ +++ Q N
Sbjct: 1020 PEIDGLSLGKKI---------------TEYPIYQNL-----PIILLSSLGQQEINFSDKL 1059
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
G ++KP + QLY A+ F
Sbjct: 1060 LG--SVINKPIKQSQLYEALLNIF 1081
>gi|389776683|ref|ZP_10194114.1| multi-sensor hybrid histidine kinase [Rhodanobacter spathiphylli B39]
gi|388436485|gb|EIL93349.1| multi-sensor hybrid histidine kinase [Rhodanobacter spathiphylli B39]
Length = 1392
Score = 262 bits (670), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 191/619 (30%), Positives = 296/619 (47%), Gaps = 97/619 (15%)
Query: 611 LKAR--AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGK 668
L+AR AE A AKS FLA +SHEIRTPMN ++GM + + T LD Q +Y + H + +
Sbjct: 637 LRARDIAEEATRAKSDFLANMSHEIRTPMNAIIGMSYLALQTALDPRQRNYIEKVHRAAE 696
Query: 669 DLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVP 728
+L+ +IND+LD +KIE+G++ E V F L DV+DN+ +L KA Q+ +EL ++ VP
Sbjct: 697 NLLGVINDILDFSKIEAGKMTMESVDFRLEDVMDNLANLVGLKAEQRNLELLFEIAPDVP 756
Query: 729 EVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788
++GDP R Q++ NL N++KFT+ KG + VSV V
Sbjct: 757 TALVGDPLRLGQVLVNLGNNAVKFTE-KGAVVVSVE---------------------RVA 794
Query: 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
+ D+V +L V D+G+G+ E
Sbjct: 795 QRGDQV----------------------------------ELHFQVRDSGIGMTSEQVSA 820
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
+F F QADSST+R YGG+G+GL+ISR LV +MGGEI SEPG GSTF F
Sbjct: 821 LFRSFSQADSSTTRKYGGSGLGLAISRRLVGMMGGEIWVDSEPGQGSTFHFHALLGVQAM 880
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
SL P+ Y D++ GLR L++DD + E+ + V A+ A ++
Sbjct: 881 PSLRPEL--YADDLN---GLRLLIVDDNPVAREILATIAAEFGVDVDTASGGGQALVMIA 935
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
+ + + +VL+D W + ++ RR + P + ++ +
Sbjct: 936 EAAAAAGGHPYDVVLMD---WK----MPTMDGVEAIRRLQEYTAMTSFPAVIMVTAHGRD 988
Query: 1029 TDRDELKSDGIV--TLLTKPLRLSVLIGCFQEDPESSK----KLQQKRKKPSLG-HLLKG 1081
D G+ +LTKP+ S L E + ++ +K ++ S L+G
Sbjct: 989 EALDAAAKSGVRVQAVLTKPVTFSSLFDAVVEALGKGRVVDSRVHRKAERNSEALRQLRG 1048
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++L+V+DN VN+ +A L + G V G+ A+D L FDA MD QMP MDG
Sbjct: 1049 ARVLLVEDNDVNQELAREILAQAGMEVVVAGHGQEALDILGRDSRFDAVLMDCQMPVMDG 1108
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
++A+ IR L +PI+AMTA+ + E+ + GM D
Sbjct: 1109 YEASRAIR--------------------AQPALAGMPIIAMTANAMIGDREKVIDAGMID 1148
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
+++KP ++ +A++
Sbjct: 1149 HIAKPLRVADMFATLAKWI 1167
>gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 1038
Score = 262 bits (669), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 197/630 (31%), Positives = 309/630 (49%), Gaps = 92/630 (14%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
R ++E E+ K AEAA+ AKSQFLA +SHEIRTPMN V+GM +L++T L+A Q
Sbjct: 265 RQQELEGMVSELQAAKHEAEAANQAKSQFLANMSHEIRTPMNAVIGMTGLLLNTPLEAQQ 324
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
D+ +T +SG L++LIND+LD +KIE+G+L+ E PF + ++ L + +SKA++K
Sbjct: 325 QDFVETIRSSGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASKASEKN 384
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
+ELA ++ P ++GD R RQ++ NL+ N++KFT +G + V V ++ K
Sbjct: 385 LELAYLINPPTPTAILGDITRLRQVLVNLLNNALKFT-GEGEVVVYVS-----SKPIESK 438
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
D E L V+ +E + V+D
Sbjct: 439 DLDAESDLE-----------------VIAEATPYE------------------IQFDVKD 463
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+GIP + R+F F Q D+ST+R +GGTG+GL+IS+ L ELMGG+I SE GST
Sbjct: 464 TGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLAISKQLSELMGGKIWVSSEVSVGST 523
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
FSFT+T +E N + PK V + G + L++DD + E+ Q M
Sbjct: 524 FSFTITASEIP-NYVSPKAASDV----QLAGKQLLIVDDNATNREILSLQAQSWGMLTCA 578
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
S A +L + L ++D + + + G+ L ++ + + L
Sbjct: 579 VKSGIKALEWLQRGVN------FDLAVLDMQMPEMD-GVTLAEKIRAEPN------GKTL 625
Query: 1017 PKIFLLATSISETD-RDELKSDGIVTLLTKPLRLSVLIGCFQE---DP----ESSKKLQQ 1068
P + L +S+ + D R +L KP++ + L + +P E + +Q+
Sbjct: 626 PLVVL--SSLGQDDIRARAGDINFSAILNKPVQQAQLQSVLAQVLGNPLIKVEQAPDVQE 683
Query: 1069 KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
H L+ IL+ +D +VN++VA LK+ G + G ++ L +D
Sbjct: 684 NPTNLGDQHPLR---ILLAEDMVVNQKVALLTLKQLGYRADVANNGLEVIEALE-RQAYD 739
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD+QMPEMDG AT ++ Q S E I+AMTA+ +Q
Sbjct: 740 VVLMDVQMPEMDGLTATREVC--------QRWSPEDRPH-----------IIAMTANAMQ 780
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
E C+ GMD Y++KP +L ++R
Sbjct: 781 GDREMCLDAGMDAYITKPVRIHELRDVLSR 810
>gi|75907786|ref|YP_322082.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
gi|75701511|gb|ABA21187.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
Length = 1550
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 199/646 (30%), Positives = 310/646 (47%), Gaps = 117/646 (18%)
Query: 597 RIAQVENDYHEMMEL-KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAA 655
++ +VE + +E+ +++AE A AKS FLA +SHEIRTPMN VLGM ++++T L+
Sbjct: 865 QLLEVETRQRQELEVARSQAELASHAKSAFLANMSHEIRTPMNAVLGMTGLMLETLLNQE 924
Query: 656 QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQK 715
Q D+ +T SG L++LIN++LD +K+E+G + E + F+L ++ VL L + +A+ K
Sbjct: 925 QRDFMETIRISGDALLTLINEILDLSKLEAGEMALENLNFNLSTCVEEVLDLLAPQAHSK 984
Query: 716 GIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775
G+E+A + VP + GD R RQI+ NL+GN+IKFT G + + V L
Sbjct: 985 GLEIAALIYRHVPIQLQGDASRLRQILMNLIGNAIKFT-SFGEVVMRVEL---------- 1033
Query: 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVE 835
+S+ + F V D
Sbjct: 1034 --------------RSETPTTAIIHFAVTD------------------------------ 1049
Query: 836 DTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGS 895
+G+GI LE Q ++FTPF Q D+ST+R YGGTG+GL+I + LV LMGGEIG S+ G GS
Sbjct: 1050 -SGLGITLEDQHKLFTPFTQVDASTTRKYGGTGLGLAICKQLVTLMGGEIGVESQLGKGS 1108
Query: 896 TFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH 955
F F + F + L P +V D R LV+DD + ++ + + R M V
Sbjct: 1109 KFWFEIPFAK----QLQPV--SFVEDCGLLNNRRLLVVDDHATNRKIIYHQVSRWGMQVD 1162
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
A+ A + + C + ++LID + + + G+ L +K S
Sbjct: 1163 QADRAVAALGMIVEACQQN--KPYDVILIDMQMPEMD-GMALGKQIKAN--------SAI 1211
Query: 1016 LPKIFLLATSISETDRDELKSD---GIVTLLTKPLR--------LSVLIGCFQEDPESSK 1064
P ++ TS ++ RDE++ G L KP++ +SVL Q + E +
Sbjct: 1212 PPTPLIMLTSTNQ--RDEVQQAIKIGFAAYLVKPVKSSRLLDTIMSVLKTPSQLEAEKLE 1269
Query: 1065 KLQQKRKKPSLGH--------------LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTC 1110
Q+ +K +L H + +IL+ +DN+VN++VA L+ G
Sbjct: 1270 VKSQELEKNNLDHSRNRNFTATQAQNSVSTKTRILLAEDNLVNQKVALKQLQSLGYTADV 1329
Query: 1111 VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFG 1170
G+ + +L +D MD QMP +DG + T +I ASG
Sbjct: 1330 AANGKEVL-QLLKQIPYDLILMDCQMPILDGLETTKEIHRWA---ESSFASGRRPV---- 1381
Query: 1171 NVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
I+AMTA+ ++ + C+ GMDDY+SKP EQL TA+
Sbjct: 1382 --------IIAMTANAMKEDKQMCLDVGMDDYLSKPVMKEQLATAL 1419
>gi|392308552|ref|ZP_10271086.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas citrea NCIMB
1889]
Length = 1349
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 196/603 (32%), Positives = 296/603 (49%), Gaps = 109/603 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K +A+ AK +FLA +SHEIRTPMN ++GM + + T+LD QL Y + K+L+
Sbjct: 597 KEQADQMSTAKGEFLANMSHEIRTPMNAIIGMSHLALKTDLDNQQLGYVTKIDQAAKNLL 656
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+IND+LD +KIESG++ E V F L +V DNV ++ + KA +K +EL + VS VP +
Sbjct: 657 GIINDILDFSKIESGKMTVESVNFLLDEVTDNVATVNAVKAQEKNLELLLDVSPDVPISL 716
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDP R QI+ NL GN+IKFT+ G I V V K LE++ S
Sbjct: 717 IGDPLRLSQILINLCGNAIKFTE-TGEIVVGV--------------KTLEQN-------S 754
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
D V L +V+D+G+G+ E Q ++F
Sbjct: 755 DNV----------------------------------TLRFSVKDSGIGLSKEQQAKLFE 780
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE---R 908
F QAD S +R YGGTG+GLSIS+ LVELMGG+IG SE G GS F FTV E R
Sbjct: 781 AFSQADGSITRKYGGTGLGLSISKNLVELMGGKIGVNSEVGKGSEFFFTVKCGLQEAKIR 840
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
N L P+ + + +ALV+DD + + L+ + +AV+ +S + A + L
Sbjct: 841 NFLCPE--------ANLKEKQALVVDDNNSARAIMNNLLKTMGLAVNSVSSGREAINELE 892
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
+ + L+ +D W+ G+ +K R E PK+ L+ E
Sbjct: 893 -------VAKYDLIFMD---WNMP-GMNGIDTIKHIRNMNLPE----QPKMILVTAYGKE 937
Query: 1029 TDRDELKSDGIVTLLTKPLRLSVLIG----CFQEDPESSKKLQQKRKKPSLGHLLKGKQI 1084
++ SD + L+ KP+ S+L+ C+ S + S G +++
Sbjct: 938 VGMNKEISDLLDGLIIKPVNASILLDSIMECYGLQRPSDHEAAPVSDIESTG--FAQQRV 995
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+V+DN+ N+ VA L+ +T + G AV+ + +FD MD+QMP MDG A
Sbjct: 996 LLVEDNITNQEVAYEMLQSVNLNITIANHGLEAVN-MVKEQDFDLVLMDMQMPVMDGLTA 1054
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T +IR ++ +PI+AMTA+ +Q ++C GM+ +++
Sbjct: 1055 TREIRKSKS--------------------FTALPIIAMTANAMQEDVDKCTDAGMNGHIA 1094
Query: 1205 KPF 1207
KP
Sbjct: 1095 KPI 1097
>gi|373487149|ref|ZP_09577818.1| PAS sensor protein [Holophaga foetida DSM 6591]
gi|372010031|gb|EHP10644.1| PAS sensor protein [Holophaga foetida DSM 6591]
Length = 1464
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 197/639 (30%), Positives = 298/639 (46%), Gaps = 144/639 (22%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
M E K AE A AK+ FLA +SHEIRTPMN ++GM + + TEL+ Q DY + SG
Sbjct: 727 MQEAKEIAEGASQAKADFLANMSHEIRTPMNAIIGMAHLALKTELNPRQKDYVKKIQQSG 786
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+G+L E HL V++NV +L + KA KG+EL V V
Sbjct: 787 QHLLGIINDILDFSKIEAGKLSVELTEVHLDKVMENVSNLITEKATAKGLELVFDVGPGV 846
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P ++GDP R QI+ N N++KFT+ +G I D+R+++
Sbjct: 847 PNDLMGDPLRLGQILINYANNAVKFTE-QGEI--------DIRTRL-------------- 883
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG-RIKLLVTVEDTGVGIPLEAQ 846
+E LG + L V DTG+G+ E +
Sbjct: 884 ----------------------------------VEDLGSEVFLRFEVRDTGIGLTEEQK 909
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F F QADSST+R YGGTG+GL+IS+ L LMGG +G S PG GSTF FT +G
Sbjct: 910 GRLFQSFQQADSSTTRKYGGTGLGLAISKKLAVLMGGNVGVDSLPGQGSTFWFTARLGKG 969
Query: 907 E-RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
+ R +L P+ PD RG R LV+DD E A HV + ++ S
Sbjct: 970 KPRRALVPR-----PD---LRGKRMLVVDDN--------------ENARHVLVDILISMS 1007
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL--------P 1017
+ + ++ A+ E+ ++ Q R GLE + ++ P
Sbjct: 1008 FQVNEVASGAEALAAIRRAAASGQPYEV----VFLDWQMPRMDGLEAAHHIKALGLDTAP 1063
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED-----------------P 1060
++ ++ E ++ G+ +L KP+ S+L P
Sbjct: 1064 RLIMVTAYGREEVLKGAETVGVEDVLIKPVSPSMLFDSIMRVLGAVLEEGEAGEGEGPLP 1123
Query: 1061 ESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
LQ L+G ++L+V+DN N++VA L G V + G +++K
Sbjct: 1124 TDEAVLQ-----------LRGLKVLLVEDNDFNQQVATELLADAGIKVDVAENGLISLEK 1172
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
+ +D MD+QMP MDG AT ++R E M PI+
Sbjct: 1173 VR-TGTYDLVLMDMQMPVMDGITATVRLR-------------EEGHRM---------PII 1209
Query: 1181 AMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
AMTA+ +QA ++C GM+DY+ KP + ++++ +AR+
Sbjct: 1210 AMTANAMQADRDRCTSAGMNDYLVKPIDPDEMFRVLARW 1248
>gi|34497953|ref|NP_902168.1| hybrid sensory kinase [Chromobacterium violaceum ATCC 12472]
gi|34332809|gb|AAQ60169.2| probable hybrid sensory kinase [Chromobacterium violaceum ATCC 12472]
Length = 738
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 200/631 (31%), Positives = 301/631 (47%), Gaps = 129/631 (20%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
M E K AE A AKS FLA +SHEIRTPMN ++GM + + T+LD Q +Y HN+G
Sbjct: 1 MREAKQMAEQATRAKSLFLANMSHEIRTPMNAIIGMSYLALRTDLDDQQRNYIGKIHNAG 60
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
L+ +IND+LD +K+E+G+LE E PF L DVLD V +L + KA KG+EL + V
Sbjct: 61 TSLLGIINDILDFSKVEAGKLELEAQPFWLDDVLDGVSALVAQKAADKGLELLFETAGDV 120
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P+ LVG++++ Q
Sbjct: 121 PQ--------------GLVGDALRLGQ--------------------------------- 133
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG-RIKLLVTVEDTGVGIPLEAQ 846
V L+G + K E ++ +E++G +++L V DTG+G+ E Q
Sbjct: 134 ------VLTNLAGNAI----KFTETGQVSIIIGQVERIGDKVQLKFCVHDTGIGMSEEQQ 183
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--- 903
R+F F QAD ST+R +GGTG+GL+I++ LVELMGG + S PG GS+F F+
Sbjct: 184 SRLFQAFSQADGSTTRRFGGTGLGLTIAKRLVELMGGSMLVESAPGWGSSFIFSCWLGVS 243
Query: 904 --TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ 961
T+ R SL PK E RGLR LV+DD +V L++L V +
Sbjct: 244 AETDSRRQSL-PK---------EIRGLRVLVVDDNQSAVDVLCAQLKQLGFEVQGCLNGH 293
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF- 1020
A S + C + + +D +M+ + GLE R + ++
Sbjct: 294 EALSKVRQDC---LQKPFDVAFVD-------------WMMPEMD---GLEAVRRMRQVSR 334
Query: 1021 -LLATSISETDRDEL----KSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKL-QQKR 1070
+ ++ RDE+ ++ G + KP+ LS VL+ F L +
Sbjct: 335 KMRIVMVTAFGRDEIRVKARAAGCDAFMVKPVNLSQLYDVLLEVFGFGRSGGLSLFDETD 394
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP--PHNFD 1128
+ P G +L+V+DN +N+++A L+ GA +T G+AA+DKL P FD
Sbjct: 395 QLPR----FDGAHLLLVEDNRINQQIAIELLEGTGATITVAANGQAALDKLLAYGPKAFD 450
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
A MD+QMP MDG +AT +IR G +P++AMTAD +
Sbjct: 451 AVLMDVQMPVMDGIEATGRIRS--------------------QPGFIDLPVIAMTADALV 490
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+C+ GM D+++KP + L++ +AR+
Sbjct: 491 EERERCLAAGMVDHIAKPIDPHILFSTLARW 521
>gi|395225868|ref|ZP_10404378.1| signal transduction histidine kinase [Thiovulum sp. ES]
gi|394445947|gb|EJF06805.1| signal transduction histidine kinase [Thiovulum sp. ES]
Length = 906
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 197/656 (30%), Positives = 311/656 (47%), Gaps = 125/656 (19%)
Query: 585 LLVGHIFHAAINRIAQ--VENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLG 642
L +G + R V+ + + + E+ ++A+ AKS F+AT+SHEIRTPMN +LG
Sbjct: 215 LFIGFYISKRVTRTIYEFVQKEKNTLEEIAKVEKSANEAKSIFIATMSHEIRTPMNAILG 274
Query: 643 MLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLD 702
+ ++L +T+LD Q ++ +T +NSG L+ +IND+LD +K+E+GRLE E + L ++++
Sbjct: 275 LTEILQNTDLDQEQYEFTETIYNSGNSLLDIINDILDYSKVEAGRLELEELNTDLENLVN 334
Query: 703 NVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVS 762
+V+ L AN+KG+ L + P+ + DP R +Q++ NLVGN+IKF
Sbjct: 335 DVVFLLEHNANEKGVRLIVDYCSTCPQFIKCDPSRLKQVLINLVGNAIKF---------- 384
Query: 763 VHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTM 822
T SG ++ K EN
Sbjct: 385 ----------------------------------TKSGHVLLRVGKKEEN---------- 400
Query: 823 EQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMG 882
LL +EDTG+GIP + +FT F Q DSST+R YGG+G+GL+IS+ ++ELMG
Sbjct: 401 -------LLFEIEDTGIGIPEKKLKNLFTIFTQVDSSTTREYGGSGLGLAISKKMIELMG 453
Query: 883 GEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE---FRGLRALVIDDKSIR 939
G+IG S GS F F + E E + D+SE +G++AL++DD
Sbjct: 454 GKIGVQSVLHIGSKFYFEIPLYESEE----------IKDLSEKKSLKGVKALIVDDYETN 503
Query: 940 AEVTRYHLQRLEMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV--WDKEIGLV 996
V L+ M V +A S + A S L + +VL D+++ D GL
Sbjct: 504 RIVFEGQLEEFGMEIVSIAESRE-AISILEEANKKG--EPFDIVLTDQNMPFLD---GLS 557
Query: 997 LHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR-------L 1049
L +K + + DE + G L KP+ L
Sbjct: 558 LSKKIKDNKNISSSIVVVTSSG--------HRGSFDEFEKAGASGYLVKPIDRKTMNKFL 609
Query: 1050 SVLIGC--FQEDPESSKKL---QQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKH 1104
+ ++G F+ P ++ + + K+ K + GK +LV +D N V + LK
Sbjct: 610 ATVLGTRDFKNPPFITRYMLNQKMKQSKDTEAKKFIGK-VLVAEDTKANVIVIKTLLKSF 668
Query: 1105 GAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGES 1164
V+ + G+ A++ L NF+ FMDL+MP MDG +AT IR E EI+ +
Sbjct: 669 NLEVSIANDGQEALN-LYKSENFNLVFMDLRMPNMDGLEATKLIRKYE-EISHKFT---- 722
Query: 1165 SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
PI+A+TADVIQ + E + GM+ Y++KPF+ ++ ++ F
Sbjct: 723 -------------PIIALTADVIQQTKEDTEQAGMNGYIAKPFKIAEITAVLSNFL 765
>gi|307132370|ref|YP_003884386.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Dickeya dadantii 3937]
gi|306529899|gb|ADM99829.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Dickeya dadantii 3937]
Length = 921
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 196/629 (31%), Positives = 305/629 (48%), Gaps = 117/629 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + + T+L + Q
Sbjct: 266 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQLTSTQK 325
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY QT S +L+++INDVLD +K+E+G+L E +PF LH+ LD V+ L + A++KG+
Sbjct: 326 DYLQTIERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGL 385
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VPE +GDP R +QIITNL+GN+IKFT ++G+I D+R
Sbjct: 386 ELTLNIQHDVPEQFVGDPLRLQQIITNLLGNAIKFT-EQGNI--------DIR------- 429
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+EK + E+ ++L L + ++DT
Sbjct: 430 --IEK-------------------------RRQESLQVL-------------LEIQIKDT 449
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P G+TF
Sbjct: 450 GIGIAEAQQTQLFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTF 509
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
TV + + L+P + +G ++ A+ T L++ VH
Sbjct: 510 WCTVNL-QLNPHVLEPDYH-----FDRLQGKHLAYVEANPAAAQAT------LDILVHTP 557
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS---- 1013
L SY + L QL D + IG+ +HY R L+ +
Sbjct: 558 ----LTVSY------SPTLEQLPERTFDILL----IGVPIHY------RNTLLDFTPLIR 597
Query: 1014 ---RNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKR 1070
R + L S++E + ++LKS GI L+KP+ L+ Q++ S+ +
Sbjct: 598 DFCRLASCVILALPSMAEMEAEQLKSFGIHASLSKPITAPRLLAMLQDNSLFSQDSNELA 657
Query: 1071 KKPSLGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
P L + ++ VDDN N ++ L++ + + G A+ + H D
Sbjct: 658 LPPPATLLSRLPLSVMAVDDNPANLKLIGALLEEQVENIILCESGADAIARAQGTH-LDI 716
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMP MDG QA+ IR L H PI+A+TA +
Sbjct: 717 ILMDIQMPGMDGLQASEHIRQLSQH--------------------THTPIVAVTAHTMSG 756
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
E ++ GMDDY+SKP +++ L + R
Sbjct: 757 EREVLLQSGMDDYLSKPIDEQMLRQTLLR 785
>gi|345871211|ref|ZP_08823158.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343920621|gb|EGV31350.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1530
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 196/632 (31%), Positives = 295/632 (46%), Gaps = 108/632 (17%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
RI QV + K+ AEA + AKS+FLA +SHEIRTPMN ++GM + + T+LD Q
Sbjct: 781 RIEQV------LQAAKSEAEAGNRAKSEFLANMSHEIRTPMNAIIGMTHLALQTKLDRKQ 834
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
+Y + +S L+ +IND+LD +KIE+G+L E + F+L D+L + ++ KA++KG
Sbjct: 835 RNYIEKVSHSADALLGIINDILDVSKIEAGKLAIERIDFNLEDILGTLATVVGLKADEKG 894
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
+EL + +P +IGDP R QI+ NL N++KFTQ G I +
Sbjct: 895 LELVFDLPQDLPLALIGDPLRLGQILINLGNNAVKFTQ-HGEIVIGA------------- 940
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
+VLE+ + + +L V D
Sbjct: 941 -EVLEQDAS-----------------------------------------QCRLHFFVRD 958
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+G+P E Q +F F QAD+ST+R +GGTG+GLSIS+ L E MGGEI S G GST
Sbjct: 959 TGIGLPPEQQRSLFRAFSQADTSTTRQFGGTGLGLSISKHLTERMGGEIWVESTHGVGST 1018
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
F FTV + + P+ LR LV+DD + L+ + V
Sbjct: 1019 FHFTVQLGKHRAAAHLPQ-----KGADALAALRVLVVDDNATARHTLSTMLKAIGPQVDE 1073
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD--KEIGLVLHYMLKQQRRKGGLEISR 1014
A+S + A L LVL+D W + G+ + + G
Sbjct: 1074 ADSGEAALECLRAAGDDPY----GLVLLD---WKMPRIDGIATARAILESTDTG------ 1120
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPES---SKKLQQKRK 1071
LP + ++ E + K GI LTKP+ S L+ + S S++ + +
Sbjct: 1121 PLPTLIMVTAYGREEAMNAAKDVGISGFLTKPVTPSSLLDAIMQSLRSTAISERPSARNR 1180
Query: 1072 KPSLGHL--LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
+ L L G ++L+V+DN VN+ + + L +G V D G A+D L FD
Sbjct: 1181 IATADDLAKLSGAKVLIVEDNDVNQELVQALLCSNGLSVEIADNGEEALDWLD-REPFDG 1239
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MDLQMP MDG+ AT IR +PILA+TA+V+
Sbjct: 1240 VLMDLQMPVMDGYTATRAIR--------------------AQPRFRDLPILAITANVMTG 1279
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221
E+ + GM+D ++KP + L+ +A++ +
Sbjct: 1280 ERERAIAAGMNDQIAKPIDVPTLFATLAKWIV 1311
>gi|410029929|ref|ZP_11279759.1| signal transduction histidine kinase [Marinilabilia sp. AK2]
Length = 720
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 200/634 (31%), Positives = 303/634 (47%), Gaps = 124/634 (19%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++ K AEAA+ +KS+FLA +SHEIRTP+NGV+G +L++TEL QL Y Q+A+ S
Sbjct: 190 LINAKEEAEAANKSKSEFLANMSHEIRTPLNGVIGFTDLLINTELSNEQLQYVQSANTSA 249
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
L+ +IND+LD +KIE+G+LE E V +L ++++ + +K IE + + +
Sbjct: 250 HILLGIINDILDFSKIEAGKLELEEVETNLIELVEQTADIVKYNTAKKNIEFLLNIQLDI 309
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P+ VI D R +QI+ NL+ N+IKFT+ KG + +SV
Sbjct: 310 PKYVILDQIRVKQILVNLLSNAIKFTE-KGEVELSV------------------------ 344
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
GF +D F + DTG+GI E Q
Sbjct: 345 ------------GFEEIDPITQEGIFTF-----------------QIRDTGIGISGEQQA 375
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
++F F QADSST+R +GGTG+GL IS+ L + MG I SE G GS FSF++
Sbjct: 376 KLFRSFSQADSSTTRRFGGTGLGLVISQMLADKMGSTITLNSELGKGSIFSFSIKRMYKR 435
Query: 908 RNSLDPKWQQYVPDVSEFRGL----RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
+S+ E+ GL R L+IDD + H+ +
Sbjct: 436 TSSI------------EYNGLINISRVLIIDDNKNNRTILE----------HILAHWNIK 473
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR--------N 1015
+ + S AL L+DKD + ++ +V ++M EI +
Sbjct: 474 TESVDNAIS-------ALTLLDKDP-NFDVLIVDYHMPFVDGVTTITEIKKLFAERPHLE 525
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF----QEDP-ESSKKLQQKR 1070
LPKI L +++ + +K I L KP ++S L C + P E ++K K+
Sbjct: 526 LPKIVLYSSADDARLENSIKELKIDAKLIKPAKISELFNCLNKISNDHPIEITQKSGTKQ 585
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDC--GRAAVDKLTPPHNFD 1128
++ L +G IL+ +D +N + + +K T ++C G+ AVD+ D
Sbjct: 586 QEKPLNK--QGISILIAEDVSLNMLLLKTIIKSFYPDATIIECSNGKEAVDQFQKSRP-D 642
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
FMD+QMPEMDGF+AT QIR LE NE GN HVPI+A+TA +
Sbjct: 643 LIFMDVQMPEMDGFEATSQIRILEK--NE------------GN----HVPIIALTAGALH 684
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
E+C++ GMD ++SKP + E+L + R S
Sbjct: 685 TEREKCLQVGMDHFLSKPIDKEKLSEVMERIIKS 718
>gi|118579340|ref|YP_900590.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
2379]
gi|118502050|gb|ABK98532.1| Hpt sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379]
Length = 977
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 195/614 (31%), Positives = 296/614 (48%), Gaps = 102/614 (16%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+FLA +SHEIRTPMNGVLGM ++L+ T L+ Q +A+T NSG+ L+++IND+LD +
Sbjct: 294 KSEFLANMSHEIRTPMNGVLGMTELLLGTLLNGKQRQFAETIRNSGEALLAIINDILDFS 353
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G++E E +PF +H++L + LF+S A+QKG+EL + + VP +V+GDP R RQ+
Sbjct: 354 KIEAGKIELEKIPFDMHELLCDAAELFASSAHQKGLELLVSIHPDVPRMVVGDPARLRQV 413
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL N++KFT D+G I +S +A+ +D +L + L V +T G
Sbjct: 414 VLNLASNAVKFT-DQGEIVISADVAE------SGQDNILIRFL---------VRDTGIGI 457
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
K +E F D S +
Sbjct: 458 SPESLEKIFEGFAQADG----------------------------------------SMT 477
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R YGGTG+GL+I R L LMGG S P GS FSFT F L QQ
Sbjct: 478 RRYGGTGLGLTIVRQLAGLMGGTTRVESTPDVGSCFSFTARF------DLPATLQQAALP 531
Query: 922 VSEFRGLR---ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQ 978
S LR LV+DD + + + M + A+ A + L + + Q
Sbjct: 532 SSAHEALREQKVLVVDDNATNRTILEQIILSWGMRIKTASCALEALASLRNAGQSDPF-Q 590
Query: 979 LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS----ISETDRDEL 1034
LA++ + D G+ L + ++ ++P + ++ + I E +R +
Sbjct: 591 LAILDMMMPAMD---GIELAHAIRTD---------PSIPPLHMVMLTSSGIIGEMERSQ- 637
Query: 1035 KSDGIVTLLTKPLRLSVLIGCF-----QEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089
+ GI LTKP+R S L C +S++ +Q++ + + L+V+D
Sbjct: 638 -AAGIEYCLTKPVRSSWLYDCLIGLTGTALGRTSQRKEQEQVVATGFTTVSDSSALLVED 696
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
N+VN+ V L+ G VT G A+D L F MD QMP MDG+Q T ++R
Sbjct: 697 NLVNQDVGREMLRFLGYEVTVASNGSEALD-LLASRRFSIILMDCQMPVMDGYQTTKELR 755
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
+ E+ A GE G H ++A+TA + E CM+ GMDDY++KP+
Sbjct: 756 -----LREKSAPGEGG-------GTPHQTVIALTAHAGEQDRELCMEAGMDDYLTKPYTL 803
Query: 1210 EQLYTAVARFFMSG 1223
EQL ++R+ S
Sbjct: 804 EQLTGILSRWTTSA 817
>gi|444376474|ref|ZP_21175718.1| BarA sensory histidine kinase [Enterovibrio sp. AK16]
gi|443679452|gb|ELT86108.1| BarA sensory histidine kinase [Enterovibrio sp. AK16]
Length = 914
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 198/618 (32%), Positives = 302/618 (48%), Gaps = 118/618 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K A+ A KS+FLA +SHE+RTP+NGV+G + ++ T L ++Q
Sbjct: 263 LEQLEIQNVELDIAKKNAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLSSSQQ 322
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY QT S +L+++IND+LD +K+E+G+L E +PF D L+ V+ L + A++KG+
Sbjct: 323 DYLQTIEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFEDSLEEVMRLLAPMAHEKGL 382
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + R+P VIGDP R +Q++TNL+GN+ KFT ++GHI VSV L +D
Sbjct: 383 ELNLRIDPRIPAGVIGDPLRIQQVLTNLIGNATKFT-ERGHISVSVELKQQ-------RD 434
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+ LE L + DT
Sbjct: 435 ERLE------------------------------------------------LQFVIRDT 446
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S SR YGGTG+GL I++ LV+ MGG+IGF S GSTF
Sbjct: 447 GIGISERQQSQLFQAFRQADASISRRYGGTGLGLVITQKLVQQMGGDIGFSSRLHQGSTF 506
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
FT++ + + + P D +G ++I+ H RL M +A
Sbjct: 507 WFTMSLIQTDLPLVHPI------DSDALQGQSLMLIEPD---------HESRLMMRERLA 551
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDK-DVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
+ +A S ++ TS L+ +D DV + + ++ Q +R S +
Sbjct: 552 H-FDIALSDFAELPETSERVSSVLICVDAVDVPESD------ALIAQAKRAEAF--SERV 602
Query: 1017 PKIFLLATS---ISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP 1073
IF L T+ +SE L + G+ L KPL + LI Q + +S L P
Sbjct: 603 --IFCLPTTELALSEA----LLASGVAACLAKPLSVRKLIEQLQGEQQSLALL-----PP 651
Query: 1074 SLG-HLLKGK-QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
++ H K ++ VDDN N ++ LK+ V G+AA+D H FD
Sbjct: 652 AVEVHTDKAPLTVMAVDDNPANLKLITALLKERVTTVFTASDGKAALDCAQKQH-FDLIL 710
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMPEMDG A +IR + +N+ H P++A+TA +
Sbjct: 711 MDIQMPEMDGVTACQEIR--KTPLNQ------------------HTPVVAVTAHAMTGER 750
Query: 1192 EQCMKCGMDDYVSKPFED 1209
E+ + GMDDY++KP E+
Sbjct: 751 ERLLNEGMDDYLTKPIEE 768
>gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
T7901]
gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
T7901]
Length = 781
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 192/610 (31%), Positives = 288/610 (47%), Gaps = 102/610 (16%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
R +AA+ AKSQF+AT+SHEIRTPMNGV+GM++ML DT L+ +Q Y SG+ L+ +
Sbjct: 259 RVKAANQAKSQFIATMSHEIRTPMNGVIGMIEMLRDTPLNDSQKHYLDVIFRSGESLLEI 318
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IND+LD +KIE+G++ E V F L+++L++ + LFS+ +++ IE +S P + G
Sbjct: 319 INDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSATTHKRDIEFVCAISPETPTQLRG 378
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
DP R RQI+ NL+GN+ KFT + GH+ V V ++D+ E L
Sbjct: 379 DPTRLRQIVVNLIGNAFKFTSN-GHVMVLVK---------SLQDRTSEHPL--------- 419
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
L ++ D+G+GI E Q +F F
Sbjct: 420 ------------------------------------LRFSIVDSGIGISKEIQRNLFQAF 443
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
QAD+ST+R YGGTG+GL+I + L ELMGG IG SE G GSTF FT+ F L
Sbjct: 444 NQADTSTTRRYGGTGLGLAICKQLAELMGGTIGVESEYGKGSTFWFTIRF------DLPE 497
Query: 914 KWQQYVPDVS-EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCS 972
Q+ P S G R L I + + + M H + A L++
Sbjct: 498 DRQRQPPSSSLALSGKRILAIHSSPVLVTAFADNCEGYNMKCHHVSKASDALKRLTNQTP 557
Query: 973 TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
+ + +D+ + D E G L +++ + P + L ++ +
Sbjct: 558 DQIYD---FLFLDQRI-DGEDGFALAQSIRE------IPAYAETPILMLTHERTTKFTME 607
Query: 1033 ELKSDGIVTLLTKP-----LRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
+L I ++L +P LR ++L ++ K P+ + +LV
Sbjct: 608 QLMP--ITSILPRPLTAHGLRTALLAQSTGVALNELISMESKAIAPA-----QKLNVLVA 660
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL-TPPHNFDACFMDLQMPEMDGFQATW 1146
+DN VNR V EG L KH + G+ AV T FD FMD +MP MDGF+AT
Sbjct: 661 EDNAVNRMVIEGLLNKHEIEPVFAEDGQEAVTAFETASPRFDLIFMDCEMPNMDGFEATE 720
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
+IR E N L +PI+A+TA V ++ GM+ Y++KP
Sbjct: 721 KIREYEK-----------------NRALTPMPIIALTAHVEAEHRQRVFNVGMNYYLTKP 763
Query: 1207 FEDEQLYTAV 1216
++L A+
Sbjct: 764 VTMDKLREAL 773
>gi|82703807|ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
25196]
gi|82411872|gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
25196]
Length = 1118
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 193/644 (29%), Positives = 304/644 (47%), Gaps = 106/644 (16%)
Query: 591 FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
F+ + I +N E+ + AEAA+ AKS+FLA +SHEIRTPMNGVLG + +L++T
Sbjct: 391 FYFSGQDITARKNIERELQNARKAAEAANRAKSEFLANMSHEIRTPMNGVLGAVGLLLNT 450
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
L +Q + A A SG+ L+ +IND+LD +KIE+G+L VPF L ++ V + +
Sbjct: 451 TLTPSQRELAGLARASGETLLCIINDILDFSKIEAGKLVISPVPFDLLQAVEEVAGMVAM 510
Query: 711 K-ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV 769
+ A + + + + VP V GD GR RQ++ NL N+IKFT DKGH+ + DV
Sbjct: 511 QPARKANVNVIVRYLPNVPRYVFGDLGRIRQVLINLTNNAIKFT-DKGHVLI------DV 563
Query: 770 RSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIK 829
++ +D+V
Sbjct: 564 EAEALSEDEV-------------------------------------------------S 574
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
L ++VED+G+GI + IF F QAD+ST+R YGGTG+GL+IS+ LV+LMGG I S
Sbjct: 575 LRISVEDSGLGIAPDKLQSIFDKFTQADASTTRRYGGTGLGLAISKQLVQLMGGTIAAKS 634
Query: 890 EPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQR 949
G GSTF FT+ +L W + +R L++DD + V + L+
Sbjct: 635 RVGAGSTFWFTLPL------ALQKNWPTDAGLHIDLTHVRVLIVDDNAANRLVLQEQLRS 688
Query: 950 LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009
M + S A L + ++ ++A ++D + D + G +L +K
Sbjct: 689 WRMRIGSCPSGAEALRALHTSHASGDPYRIA--ILDHQMPDMD-GEMLGRTIKAD----- 740
Query: 1010 LEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQ 1067
+ R++ + L + R+ L+ G L KP R S L+ D + ++
Sbjct: 741 -PLLRSIHLVMLSSLGQEGDLRERLQKIGFAAYLVKPARQSELLSTLVNIWDAQRHQRTI 799
Query: 1068 QKRKKP------------SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
+P S L G ++L+ +DN N+ V L+ G +V GR
Sbjct: 800 NLISQPFFPANPEMQAADSSNGLFAGTRVLLAEDNATNQIVGAMILRNLGCLVDVATNGR 859
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
A++ + +D FMD +MPEMDGF+AT +R + +
Sbjct: 860 EAME-MVDAFLYDMVFMDCEMPEMDGFEATAALRRRPDSKS------------------- 899
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+P++A+TA +Q E+C++ GMDDY+SKP + E A+ R+
Sbjct: 900 RLPVIAVTAQAMQGDRERCLRAGMDDYISKPVKLEDFAAALKRW 943
>gi|442319645|ref|YP_007359666.1| sensory box histidine kinase/response regulator [Myxococcus
stipitatus DSM 14675]
gi|441487287|gb|AGC43982.1| sensory box histidine kinase/response regulator [Myxococcus
stipitatus DSM 14675]
Length = 925
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 204/631 (32%), Positives = 315/631 (49%), Gaps = 116/631 (18%)
Query: 605 YHEMMELKARAEAADVA---KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQ 661
YH++ +L+ +AA+ A KS FLAT+SHEIRTPMN ++GM ++++T L Q ++
Sbjct: 236 YHDITDLQRARQAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLMLETHLSEEQREFIS 295
Query: 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
T S + L++L+NDVLD +KIE+GRLE + PF L +++VL L + +A++KG++L
Sbjct: 296 TIRQSSEALLTLLNDVLDFSKIEAGRLEADLHPFDLRQCVESVLDLLAVRASEKGLDLGA 355
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLE 781
+S +VP+VV+GD R RQ++ NLVGN++KFT+ G + VSV D + D D
Sbjct: 356 DISPQVPQVVMGDASRLRQVLLNLVGNALKFTESGGAV-VSV----DGTRRGDAPDAPWV 410
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
S V +T G PV
Sbjct: 411 LSF--------AVQDTGPGIPVTK------------------------------------ 426
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE--PGTGSTFSF 899
Q +F PF Q D + +R +GGTG+GL+IS+ LVE MGG I SE PG G+TF F
Sbjct: 427 ----QQGLFQPFNQLDVAVTRKFGGTGLGLAISKRLVEAMGGRIWVESEGVPGRGTTFFF 482
Query: 900 TVTFTEGERNSLDPKWQQYV-PDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
++T + + Y+ D +G R L++DD +I + LQ A
Sbjct: 483 SLTLQAAPQTTAG-----YLRADQPALQGRRVLIVDDNAINRRLLGRQLQTWGAEPVEAG 537
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
S A + L + LVLID+ + + G L +K++ +L K
Sbjct: 538 SGMEALAKLQPGA------RFDLVLIDQQMPGLD-GPSLASRIKER---------EDLQK 581
Query: 1019 IFLLATSISETDRDELKSDGIVT-LLTKPLRLS----VLIGCFQED--PESSKKLQQ--- 1068
I LL ++ T R + G+ + +L++P++ S L+ CF ++ P +++ Q
Sbjct: 582 IPLLL--LTSTGRRAVPPPGLFSAVLSRPMKASHLHDTLVSCFSQEVAPVNAEPPPQGTL 639
Query: 1069 -KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
R++P L+ IL+V+DN N+R+A L + G V GR A++ + F
Sbjct: 640 APRERPGDRVPLR---ILLVEDNPTNQRLASLLLDRLGYQVQAASNGREALE-WSMRQRF 695
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MDLQMPEMDG +AT ++R E+ V W ++AMTA+ +
Sbjct: 696 DVVLMDLQMPEMDGLEATRRLRR----------------ELPPKVQPW---VVAMTANAM 736
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ EQC + GMDD+++KP E L A+ R
Sbjct: 737 DSDREQCFEAGMDDFLAKPIRVEALTAALVR 767
>gi|405363367|ref|ZP_11026321.1| two-component hybrid sensor and regulator [Chondromyces apiculatus
DSM 436]
gi|397089775|gb|EJJ20674.1| two-component hybrid sensor and regulator [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 915
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 204/636 (32%), Positives = 316/636 (49%), Gaps = 124/636 (19%)
Query: 605 YHEMMELKARAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQ 661
YH++ +L+ +AA + AKS FLAT+SHEIRTPMN ++GM +L+D L Q D+
Sbjct: 224 YHDITDLERARKAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRALTEEQRDFVA 283
Query: 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
T S + L++L+NDVLD +KIE+GR E E PF L +++VL L + +A++KG++L
Sbjct: 284 TIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLLAVRASEKGLDLGC 343
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLE 781
++ +VP++++GD R RQ++ NLVGN++KFT+ G + VSV A
Sbjct: 344 DIAPQVPQMLVGDASRIRQVLLNLVGNALKFTEHGGAV-VSVEGA--------------- 387
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
++SG W L +V+DTG GI
Sbjct: 388 ---------------SVSGAEGAAEW---------------------ALTFSVQDTGPGI 411
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE--PGTGSTFSF 899
P + + +F PF Q D+S SR +GGTG+GL+IS+ LVE MGG + SE G G+TFSF
Sbjct: 412 PEDRRAGLFQPFNQLDASVSRRFGGTGLGLAISKRLVEAMGGTLWVESEGIAGRGTTFSF 471
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSE----FRGLRALVIDDKSIRAEVTRYHLQRLEM-AV 954
T+ R P Q Y + + +G R L++DD ++ + L+ + V
Sbjct: 472 TL------RAQSAP--QAYAVHLRQEQPLLQGRRVLIVDDNALFRRLLGRQLRAWGVEPV 523
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
A+ + + + T +VLID + G+ + ++ RR+G +
Sbjct: 524 ETASGPEALSQFQAGTGYD-------VVLIDHHM----PGMDGTALAERIRREG-----Q 567
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVT-LLTKPLRLS----VLIGCF-QEDP--ESSKKL 1066
LP + L S R +G+ +L++PL+ S LI CF Q P +++L
Sbjct: 568 GLPLLLL-----STPGRRGSPPEGLFAGVLSRPLKTSQLYDALISCFSQHVPPVPGTREL 622
Query: 1067 QQKRKKPSLGHLLKGKQ----ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
Q R P G + G IL+V+DN N+++A L++ G GR A+ ++
Sbjct: 623 QASRAGPFPG-VRPGDSVPLDILLVEDNATNQKLALLVLERLGYRADVALNGRQALHAVS 681
Query: 1123 PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAM 1182
+D MDLQMPEMDG +AT +IR E+ W ++AM
Sbjct: 682 -QKRYDVVLMDLQMPEMDGLEATRRIRQ----------------ELPPRAQPW---VIAM 721
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
TA+ + + EQC GMDD++ KP + L +A+ R
Sbjct: 722 TANAMDSDREQCFSAGMDDFLGKPIRVDALTSALLR 757
>gi|78355591|ref|YP_387040.1| multi-sensor hybrid histidine kinase [Desulfovibrio alaskensis G20]
gi|78217996|gb|ABB37345.1| multi-sensor hybrid histidine kinase [Desulfovibrio alaskensis G20]
Length = 981
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 189/623 (30%), Positives = 301/623 (48%), Gaps = 112/623 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ + AE A AK F+A++SHE+RTPMN ++GM+++ + TEL Q +Y +
Sbjct: 253 QELEHARHTAEQASKAKGDFVASMSHELRTPMNAIIGMIEIALKTELTVKQREYLTIIRS 312
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S + L+ ++ND+LD +KIE+ ++E E +PF ++L+ V LF + KG+EL + +
Sbjct: 313 SARSLLGVVNDILDISKIEAQKMELEHIPFSTQEMLEEVTDLFRERVGMKGVELVLDIEA 372
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VP V++GDP R +Q++ NLV N+ KFT+ +VR +V
Sbjct: 373 DVPAVLVGDPLRLKQVLVNLVTNAFKFTKQG-----------EVRIRV------------ 409
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
+V +S V ++L +V DTG+GI EA
Sbjct: 410 AVGSRSQDV---------------------------------VQLEFSVRDTGLGIGEEA 436
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
+ R+F F QA+ ST+R +GG+G+GLSI+R LV LMGG I SEPG GS F FT F+
Sbjct: 437 RNRLFDTFSQAEGSTARLFGGSGLGLSIARELVRLMGGTITVASEPGKGSDFRFTGRFS- 495
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
++ ++ RG LV D++S R +TR L+RL C
Sbjct: 496 ---LPVEAVEARHHRTGEAPRGRVLLVEDNESNRLVMTRM-LERL----------GYDCD 541
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEI----GLVLHYMLKQQRRKGGLEISRNLPKIFL 1021
L D + + L D + D + GL + L+ +++ LP +F+
Sbjct: 542 ALQDGYTAYERLKRQAALYDLILLDWRLPGVDGLEVLEKLRAEKQP--------LPPVFM 593
Query: 1022 LATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKG 1081
+ E + + + G+ + L+KP++LS L + + +++ ++ G
Sbjct: 594 MTAFGREAELERAEELGVASFLSKPVKLSSLSDAIR--AMRGEMTPEEQTDTAMIRQFDG 651
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR---AAVDKLTPPH--NFDACFMDLQM 1136
+ L+V+DN++NR VA L+ G V + G A +D + PP FD FMD+QM
Sbjct: 652 MRALLVEDNIINRHVALDMLQDMGFSVVSAEHGEEALAVLDDVEPPSGPGFDVVFMDIQM 711
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCM 1195
P MDG +AT IR W H+PI+AMTA V+ ++ +
Sbjct: 712 PVMDGIEATRVIRQHPR---------------------WRHIPIIAMTAHVMSEDRDKAL 750
Query: 1196 KCGMDDYVSKPFEDEQLYTAVAR 1218
+ GM+DYV+KP + L + R
Sbjct: 751 EAGMNDYVTKPVDRMMLLQVLQR 773
>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
Length = 1499
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 207/634 (32%), Positives = 303/634 (47%), Gaps = 128/634 (20%)
Query: 598 IAQVENDYHEMM--------ELK-ARAEAADVA--KSQFLATVSHEIRTPMNGVLGMLQM 646
I +E+ ++ MM ELK AR A + A K +F A VSHE+RTP+NGVLGML++
Sbjct: 238 IMDMESAFNTMMTVLEAREQELKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLEL 297
Query: 647 LMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLS 706
L + L Q +Y Q A NSG+ L+ LI ++LD ++IESGR + + F+L ++LD+ +
Sbjct: 298 LRNMGLTPKQREYVQVACNSGETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIG 357
Query: 707 LFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766
L + +A +K ++L V+ VP + GD R RQI+ NL+GN++KFT+ +G + V V L
Sbjct: 358 LLAGQAQRKDLDLGYVVAKNVPPSLRGDATRIRQILINLMGNAVKFTE-QGEVSVEVQLL 416
Query: 767 DDVRSKV----DVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTM 822
+ K+ +VKD T G P+
Sbjct: 417 EKTAKKLVLLFEVKD-------------------TGIGIPI------------------- 438
Query: 823 EQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMG 882
E Q IF F QADSST+R YGGTG+GL+I R LV+LMG
Sbjct: 439 ---------------------EFQKHIFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMG 477
Query: 883 GEIGFVSEPGTGSTFSFTVTFTEG----ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSI 938
G+IG S+ G GS F FTV E ER L+ + GLR L++DD ++
Sbjct: 478 GDIGVESKFGGGSRFWFTVPLEEAVALQERRDLNR---------ANVAGLRLLIVDDSTV 528
Query: 939 RAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLH 998
M A + Q A L LA LID+++ E G+ L
Sbjct: 529 SRRFLEQTFSFWGMYHGSAENGQQALKMLRSAAIQGRAYDLA--LIDENMPGME-GVDLV 585
Query: 999 YMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058
+ + + + + KI L+ T D G+V + KP++ S L
Sbjct: 586 HRIAESPQISSV-------KIILMGRQHQPT-VDVSHLPGVVNYIAKPVQQSPLYNAIVT 637
Query: 1059 DPESSKKLQQK-----RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDC 1113
+ S K Q + ++PS + + ILVV+DN VN++VA G LK+ G V
Sbjct: 638 TVKQSGKGQPELPLAAMEEPSFAN----RYILVVEDNRVNQQVAVGMLKRFGCHVEVAAN 693
Query: 1114 GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVG 1173
G+ A+D L ++D MD MP MDG++AT +IR LE G
Sbjct: 694 GQEALD-LVARKSYDLVLMDCHMPRMDGYEATRRIRSLE-------------------AG 733
Query: 1174 LWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
VPI+AMTA+V + +++C+ GM+DY+ KP
Sbjct: 734 KVQVPIIAMTANVREGDSDKCLSVGMNDYLPKPL 767
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 25/173 (14%)
Query: 1049 LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAI 1107
L+VL+ + E+ LQQ+ + S G + K ++L+VDD+ R L++ G
Sbjct: 894 LAVLVSEYSLVKEA---LQQEIQPESYGAMDKRPSRVLIVDDDRAMRMALRNVLEEGGYR 950
Query: 1108 VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAE 1167
+ G A+ D MD MP +DGF+A QIR +
Sbjct: 951 IEEAVNGEQAL-AFCRRQMPDLVLMDAVMPLLDGFKACTQIRDMP--------------- 994
Query: 1168 MFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
G H P+L +TA + S EQ G DY+ KP L VAR
Sbjct: 995 -----GSRHTPVLIITALDDEHSIEQAFSAGATDYIPKPLHFGVLRQRVARLL 1042
>gi|359463382|ref|ZP_09251945.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris sp. CCMEE 5410]
Length = 755
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 194/598 (32%), Positives = 279/598 (46%), Gaps = 96/598 (16%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
K FLA +SHEIRTPMNGV+GM +L+DTEL Q +Y +T SG L++LIND+LD +
Sbjct: 236 KDDFLAMMSHEIRTPMNGVIGMTGLLLDTELTPQQQEYTETIRKSGDSLLTLINDILDYS 295
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+L+ E F++ +++ L L +S+ K IELA V VP+ ++GD R RQI
Sbjct: 296 KIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIELAGVVEPDVPQAILGDVTRLRQI 355
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL+GN+IKFT +S +V +S
Sbjct: 356 LVNLLGNAIKFT------------------------------------QSGEVVVNVSAE 379
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
P +E L V DTG+GIP E Q R+F F Q DSST+
Sbjct: 380 PFAADTPLYE------------------LSFAVRDTGMGIPAERQNRLFKSFSQVDSSTT 421
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R +GGTG+GL+I + L ELMGG I SE G GSTF+FT+ E E ++ Q +P
Sbjct: 422 RKFGGTGLGLAICKRLSELMGGRIWVESEEGQGSTFAFTIQAEETEDTTV---VAQSLPA 478
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
V+ + R LV+DD V + +M VA S A L +
Sbjct: 479 VT-LKDKRVLVVDDNDTNQRVLTLQTESWKMKPQVAASGYEALGLLEHAGP------FDI 531
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVT 1041
++D + + + GL L ++ R N P + L TSI +
Sbjct: 532 AILDMQMPEMD-GLTLAQKIRSHPRGA------NFPMVML--TSIGQAPDLAHHKSLFSA 582
Query: 1042 LLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK---QILVVDDNMVNRRVAE 1098
L KP++ S L + ++ Q P L + + +IL+ +DN VN+++A
Sbjct: 583 WLNKPIKQSQLYNALVKSLTGNEVKTQSSTAPQLDTEMADRHPLKILLAEDNPVNQKLAV 642
Query: 1099 GALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ 1158
L K G V G + L ++D MD+ MPEMDG AT I +
Sbjct: 643 LILAKMGYRPDVVGNGLEVLQALK-RQSYDVILMDVNMPEMDGLTAT-------THIYQS 694
Query: 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
+ S E I+AMTA+ +Q E+C+ GMDDYV+KP ++L A+
Sbjct: 695 VMSEERPR------------IIAMTANAMQGDREKCLDVGMDDYVTKPINIQELVVAL 740
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
LK K++LVVDDN N+RV + G A+ L FD +D+QMPE
Sbjct: 481 LKDKRVLVVDDNDTNQRVLTLQTESWKMKPQVAASGYEALGLLEHAGPFDIAILDMQMPE 540
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG +IR N P++ +T+ + QA + K
Sbjct: 541 MDGLTLAQKIRSHPRGAN--------------------FPMVMLTS-IGQAPDLAHHKSL 579
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
+++KP + QLY A+ +
Sbjct: 580 FSAWLNKPIKQSQLYNALVK 599
>gi|350552380|ref|ZP_08921582.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349794322|gb|EGZ48139.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 2334
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 202/630 (32%), Positives = 304/630 (48%), Gaps = 104/630 (16%)
Query: 590 IFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMD 649
IF + + V +D E+ + + AE A AKS FLA +SHEIRTPMN V+G+ Q+L+
Sbjct: 1568 IFKLSSGEVVAVYDDLTEIKQAQQEAELASRAKSDFLANMSHEIRTPMNAVIGLSQLLLQ 1627
Query: 650 TELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFS 709
T LD Q DY HN+ + L+ +IND+LD +KIESG LE E F + D+LD + LF
Sbjct: 1628 TPLDERQQDYLNKIHNASRMLLGIINDILDYSKIESGNLELEQTGFQITDILDQMAVLFG 1687
Query: 710 SKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV 769
A++KG+EL ++ VP+ LVG++++ +Q
Sbjct: 1688 EAASEKGLELLFHIHAEVPQA--------------LVGDALRLSQ--------------- 1718
Query: 770 RSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIK 829
VL L S+ + TL G L + + +++
Sbjct: 1719 ---------VLSNLL------SNAIKFTLQGSVT------------LTVSQIHQDPHQVQ 1751
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
L V+D+G+G+ E Q ++F PF QAD+ST+R +GGTG+GL ISR LVE MGG + S
Sbjct: 1752 LRFCVKDSGIGMTPEQQAKLFKPFTQADTSTTRKFGGTGLGLVISRKLVEKMGGSLQLES 1811
Query: 890 EPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQR 949
G+ F F ++ S ++ + E +G R L++DD + + R L +
Sbjct: 1812 AIEKGACFWFDLSLPICTVLS-------HITNCPETQGRRILIVDDHASARLILREMLLQ 1864
Query: 950 LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009
+ + ANS + A + + +L+D + + GL +KQ + G
Sbjct: 1865 CDYEIEEANSGEQAIEKM--LAAEQAGGGFNFILLDWKMPNGMDGLQTIDHIKQLQASGV 1922
Query: 1010 LEISRNLPKIFLLATSISETDRDELKSDG--IVTLLTKPLRLSVLIGCFQE----DPESS 1063
L RN L+ IS ++ E+ D I L+KP+ + L Q D +S+
Sbjct: 1923 L---RNQHTEILM---ISAYNKQEIALDSHHISAFLSKPVTATTLFEALQRAEKGDTQSA 1976
Query: 1064 KKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP 1123
K +Q K P+ L G QIL+V+DN +N+ VA L+K GA V V+ G AV
Sbjct: 1977 TKHRQISKVPA----LTGLQILLVEDNEINQEVALRMLEKTGAEVFIVEDGAQAVAVALQ 2032
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
H FD MDLQMP MDGF+AT QIR A G+ +PI+A++
Sbjct: 2033 TH-FDLILMDLQMPVMDGFEATRQIR----------AQGQ------------RMPIIALS 2069
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQLY 1213
A V+Q ++ G DD+++KP + LY
Sbjct: 2070 AAVMQEDKQRAAAAGADDHIAKPIDSAVLY 2099
>gi|428213913|ref|YP_007087057.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002294|gb|AFY83137.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1680
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 208/672 (30%), Positives = 314/672 (46%), Gaps = 117/672 (17%)
Query: 595 INRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA 654
+ IA V ++ +E++E + A A KSQFLA +SHEIRTPMNGVLGM +L+ T L
Sbjct: 931 VGGIAIVTDNINELVEARETALEAARIKSQFLANMSHEIRTPMNGVLGMTGLLLQTSLSN 990
Query: 655 AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQ 714
Q D A+T SG+ L+ +IND+LD +K+E+G + E + F L ++ V+ L ++ A+Q
Sbjct: 991 QQRDCAETIRISGEHLLRVINDILDFSKLEAGEMNLESLDFQLSTCIEEVVDLLAAPAHQ 1050
Query: 715 KGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVD 774
KG+ELA+++ +VP+ +IGDP R RQI+ NL+ N IKFT +G + V V+
Sbjct: 1051 KGLELAVWIDPKVPQHLIGDPARLRQILLNLINNGIKFTH-RGEVVVQVN---------- 1099
Query: 775 VKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
+ +SL++ K +V+ L TV
Sbjct: 1100 --QSMKPESLDA---KGQEVW----------------------------------LRFTV 1120
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+DTG+GIP E Q ++F F Q D+ST+R YGGTG+GL+I + LVELMGGEIG S P G
Sbjct: 1121 QDTGIGIPKERQNKLFQSFSQVDTSTTRRYGGTGLGLAICKQLVELMGGEIGVESYPDRG 1180
Query: 895 STFSFTVTF-TEGERNSLD-PKWQQYV-----------PDVSEFRGLRALVIDDKSIRAE 941
S F F + F +G R S P+ + P + + LR L D E
Sbjct: 1181 SNFWFELKFRKQGTRVSGSIPRCALPIALTEVKVLVAHPSAATRQSLRYLAADWGIGLDE 1240
Query: 942 VTRYH--LQRLEMAVHVANSMQLA-----------------------CSYLSDTCSTSVL 976
V Y Q L+ A Q+A C +D C+ S
Sbjct: 1241 VENYSSLCQTLQAAATAGQPYQVAIVDLHLLLGLEDDRQEHGDCQEDCKNCTD-CTLSDE 1299
Query: 977 PQLALV--LIDK-DVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
P ++V I K + E L L L+ + R L + + + + R
Sbjct: 1300 PDPSMVEEFIQKLSPFTPETSLFLMTTLQYRDRALALVQCSQQRGLSFVEGHLVKPVRSS 1359
Query: 1034 LKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVN 1093
+ ++T++ +P S + + + P + +ILV +D+ +N
Sbjct: 1360 QLLNSLMTVVLRPQTRS-----------GDRTVSDSPQNPVPSPIHSPVKILVAEDHPIN 1408
Query: 1094 RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLEN 1153
++V L+ G CV G A+ +L H +D MD QMP +DG+Q T +IR E
Sbjct: 1409 QQVILQQLEALGYQGECVGNGVEAIARLGQKH-YDIVLMDCQMPGLDGYQTTQEIRKRE- 1466
Query: 1154 EINEQIASGESSAEMFGNVGLWHVP-----ILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
S ES + H P ++A+TA + A E+C+ GMDDY+SKP
Sbjct: 1467 ATGSLCQSTESDSPD-------HSPPHKTVVIALTAHAMSAEREKCLAAGMDDYLSKPVH 1519
Query: 1209 DEQLYTAVARFF 1220
+ L + R+
Sbjct: 1520 LDHLSALLERWI 1531
>gi|218778400|ref|YP_002429718.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218759784|gb|ACL02250.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1153
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 188/636 (29%), Positives = 303/636 (47%), Gaps = 108/636 (16%)
Query: 602 ENDYHEMMELKARAEA-ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
E + E+ E + +A A+ KS F+A +SHEIRTPMN ++G+ + + T+L + Q DY
Sbjct: 367 ERKFREIAEREKQAAVMANETKSLFVANMSHEIRTPMNAIIGLSSLALRTDLTSRQRDYL 426
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
S + L+ +IND+LD +KIE+GRL E + F L D L+N+ + S KA++KG+++
Sbjct: 427 TKIEYSAQSLLRIINDILDLSKIEAGRLTMEAIEFDLEDALNNLAKMVSVKADEKGLDVI 486
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
+ VP +IGDP R Q++ NL N++KFT+ +G + + V R DV+ L
Sbjct: 487 FDIGKDVPTGLIGDPTRLNQVLLNLTDNAVKFTE-QGQVIIKVRRE---REAADVQGSTL 542
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
F V+D TG+G
Sbjct: 543 R-------------------FSVID-------------------------------TGIG 552
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
+ + +F F QAD+S +R +GGTG+GL+IS+ +V+LMGGEI SE G GSTF+FT
Sbjct: 553 MRAQQAPYLFQSFTQADASITRKHGGTGLGLTISKHIVDLMGGEISVSSEFGVGSTFTFT 612
Query: 901 VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
F L + ++ + LV+DD EV + +L+ V A +
Sbjct: 613 AHF------GLHSQAKKKTAPIPFLSAHNVLVVDDNRAAREVMKENLEGFGCTVRTAAAG 666
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
A S + + LVL+D ++ + GL M+K R+ + P +
Sbjct: 667 AEAVSKVE---KADAMEPFHLVLMDWNMPGMD-GLEAARMIKSSRQIA------HPPAVM 716
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLR--------LSVLIGCFQEDPESSKKLQQKRKK 1072
++ +E + G L KP+ L+V+ G PE+ Q+R+
Sbjct: 717 IVTAYGNEELIQQSNQAGNDGFLVKPVTPSVLYNSILTVMQGAHSPGPET-----QEREP 771
Query: 1073 PSLGHL--LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD---KLTPPHNF 1127
+ L ++G ILVV+DN +N+++ L+ G V+ + G+AA+D L P
Sbjct: 772 LEIYGLDGIRGAHILVVEDNEINQQIVVELLELEGFSVSVAEHGKAALDIIHALEPNEKI 831
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
DA MD+QM EMDG+ AT +IR + L +PI+AMTA +
Sbjct: 832 DAILMDVQMSEMDGYTATQEIRKMP-------------------APLCLIPIIAMTAHAM 872
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
+ ++C+ GMDD+V KP + + ++ + ++ G
Sbjct: 873 PSERDKCLASGMDDFVPKPIDQKGMFQTLVKWIPPG 908
>gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1255
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 200/622 (32%), Positives = 304/622 (48%), Gaps = 109/622 (17%)
Query: 601 VENDYHEMMELKAR---AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
V ++ ++L+A AEAA AKSQF+A++SHEIRTPMNG+LGM ++L+ T LD Q
Sbjct: 573 VTDERERALQLQAARDVAEAASQAKSQFMASMSHEIRTPMNGILGMTELLLGTRLDDRQR 632
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
+AQ + SG++L+ +INDVLD +KIE+GRLE F+L ++++ L L + +A++KG+
Sbjct: 633 RFAQAVYRSGENLLEIINDVLDFSKIEAGRLELAPTDFNLRTLIEDTLDLLAPRAHEKGL 692
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL+ + VP V+ DP R RQ++TNLV N++KFT+ H V+V L R +
Sbjct: 693 ELSFRETGDVPANVLADPLRLRQVLTNLVANAVKFTE---HGEVTVDLRFLPRPR----- 744
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+G P + ++ V DT
Sbjct: 745 ---------------------AGAPAMLEFR-------------------------VRDT 758
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+G+ E R+FT F QA +R YGGTG+GL+ISR LVELMGG+I VS+PG GS F
Sbjct: 759 GIGMAAELLPRLFTAFTQAHGGMARRYGGTGLGLAISRQLVELMGGQIDVVSQPGVGSEF 818
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
FT+TF G + +P R LV++D + V + L ++V +A
Sbjct: 819 RFTMTFEPGSGRDSEAGELTALPQA------RVLVVEDHATNRTVLDHLLSAWGLSVTLA 872
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVW--DKEIGLVLHYMLKQQRRKGGLEISRN 1015
Q A L + + P + L+D W + G+ L+ + G ++
Sbjct: 873 VDGQAALELLRNRPADQ--PDFDIALVD---WRMPRLDGIGFAKALRAEGLAPGTQL--- 924
Query: 1016 LPKIFLLATSISETDRDELKSD-GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
++ +S S D L D G V + KP+R + L ++ + R
Sbjct: 925 -----VMLSSASAPDDARLAQDAGFVRFIHKPVRKAELR-------QAILGVTASRGVEP 972
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIV----TCVDCGRAAVDKLTPPHNFDAC 1130
+ ++ Q+LVV+DN VN+ V L + G V T +D R ++ D
Sbjct: 973 VDAQVRA-QVLVVEDNPVNQEVMGQMLHRLGCRVRVAGTALDGLRVLCEQ-----PVDLV 1026
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP MDG +A IR GESS F ++P++A+TA+ +
Sbjct: 1027 LMDIQMPGMDGIEALHWIRR-----------GESS--RFKLRTPANLPVVAVTANALDGD 1073
Query: 1191 NEQCMKCGMDDYVSKPFEDEQL 1212
E+ + G D Y+SKP+ QL
Sbjct: 1074 EERFLGFGFDAYLSKPYRQSQL 1095
>gi|87121408|ref|ZP_01077297.1| Serine/Threonine protein kinase and Signal Transduction Histidine
Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
gi|86163251|gb|EAQ64527.1| Serine/Threonine protein kinase and Signal Transduction Histidine
Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
Length = 2241
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 204/661 (30%), Positives = 319/661 (48%), Gaps = 113/661 (17%)
Query: 572 TAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSH 631
T + A ++L +++ NRI + E+ + + A A+ +KS FLA +SH
Sbjct: 1448 TLLKAIAAQAAVSLSNAYLYSTLENRITERT---RELNQARLTAIKANQSKSNFLANMSH 1504
Query: 632 EIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691
EIRTPMNGV+G+ Q+L+ T LD Q +YA+ S L+++IND+LD +KIE G++ E
Sbjct: 1505 EIRTPMNGVIGLSQLLLKTNLDNKQKNYAKKTLESANSLLTIINDILDFSKIEVGKMTLE 1564
Query: 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIK 751
PF+L ++ V ++ +A+ K +EL + +S +P +IGD R QI+ NL N++K
Sbjct: 1565 EAPFNLEQLVKRVTTICELRAHTKDLELIVDISPNIPFNLIGDALRLEQILLNLTSNAVK 1624
Query: 752 FTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWE 811
FT+ GH+ + V +SLN V+
Sbjct: 1625 FTK-SGHVIIRV------------------QSLNEVE----------------------- 1642
Query: 812 NFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGL 871
+D+ + ++L + VEDTG+GI + +F F QA+ S +R +GGTG+GL
Sbjct: 1643 ----IDDMH-------VQLNIEVEDTGIGISEQQCALLFESFTQANDSITREFGGTGLGL 1691
Query: 872 SISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRAL 931
+I + LVELM G+I S+P GSTFS + E + Q ++ + L L
Sbjct: 1692 AICKQLVELMQGQIQVRSQPNIGSTFSLKINLERAEELA-----QPSAKNI--YHNLNIL 1744
Query: 932 VIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDK 991
V+DD I +V L L ++ AN A + D S + +V++D + +
Sbjct: 1745 VVDDNPISQQVISRMLGHLNISCTQANDGSKAVECVQDAASKNT--HFDMVIMDWKMPNM 1802
Query: 992 EIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDG----IVTLLTKPL 1047
+ G+ ++KQ+ LE+ P I +L S DRDE+K G I L KP+
Sbjct: 1803 D-GIEASRIIKQE-----LELDTP-PHILML----SAYDRDEVKLLGSPITIDHYLEKPV 1851
Query: 1048 RLSVLIG--------CFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
S L+ C Q ES Q K H QIL+V+DN +NR VA
Sbjct: 1852 SQSTLVETIGEVLGMCAQTQLESEPLTQFDANKFDFKHC----QILLVEDNEINRHVALE 1907
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
L + G V G+ AV+ L +++ MD+QMP MDG AT +IR Q+
Sbjct: 1908 LLSETGIKVDIALNGQDAVN-LVSVNDYHLILMDIQMPIMDGLTATKRIR--------QL 1958
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
S E +PI+AMTA + + E+ + GM+D+++KP E L+ A+ ++
Sbjct: 1959 KSKE------------ELPIIAMTAHAMPSEKEKSLIAGMNDHLTKPIEPNYLFNALNQW 2006
Query: 1220 F 1220
Sbjct: 2007 L 2007
>gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 1258
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 195/619 (31%), Positives = 287/619 (46%), Gaps = 126/619 (20%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
RAEAA AK+ FLA +SHEIRTPMN ++GM + + TEL+ Q DY + SG+ L+ +
Sbjct: 605 RAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTELNPRQRDYVRKIQQSGQHLLGI 664
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IND+LD +KIE+G+L E HL VLDNV +L S K KG+EL V+ VP
Sbjct: 665 INDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVP----- 719
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
++VG+ ++ G I ++ + ++
Sbjct: 720 ---------NDMVGDPLRL----GQILIN--------------------------YANNA 740
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR-IKLLVTVEDTGVGIPLEAQVRIFTP 852
V T +G VV E LG ++L V DTG+G+ E R+F
Sbjct: 741 VKFTETGEIVV-------------AVRLAEDLGEAVRLRFEVRDTGIGLSAEQMGRLFQS 787
Query: 853 FMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE-RNSL 911
F QAD+ST+R YGGTG+GL+ISR L ELM GE+G S+PG GSTF FT +G R +L
Sbjct: 788 FQQADTSTTRKYGGTGLGLAISRKLAELMDGEVGVESQPGRGSTFWFTACLGKGRPRRAL 847
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
PK PD RG LV+DD V L + V S A + + +
Sbjct: 848 VPK-----PD---LRGRHMLVVDDNENARAVLVDMLTSMSFRVEAVESGAAAVARVREVA 899
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL--------PKIFLLA 1023
+V +D W Q G+E +R + P + ++
Sbjct: 900 GAK---PFEVVFLD---W-------------QMPGMDGIETARAILGLGLTSPPHMIMVT 940
Query: 1024 TSISETDRDELKSDGIVTLLTKPLRLSVLI--------GCFQEDPESSKKLQQKRKKPSL 1075
E +S GI +L KP+ S++ + DPE + ++ +L
Sbjct: 941 AHGREEVMKAAESAGIEDVLIKPVNPSIMFDAVMRALGAALEGDPEEAAA-GREVSDDAL 999
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
L+G ++L+ +DN N++VA L G V + G+ AVD + +D MD+Q
Sbjct: 1000 AS-LRGLRVLLAEDNDFNQQVATELLADGGVEVEVAENGKIAVD-MVMAAPYDMVLMDMQ 1057
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP MDG AT +IR L G +P++AMTA+ +QA ++C
Sbjct: 1058 MPVMDGVAATREIRRL---------------------GFGDLPVIAMTANAMQADRDRCA 1096
Query: 1196 KCGMDDYVSKPFEDEQLYT 1214
GM+DY++KP + ++L+
Sbjct: 1097 AAGMNDYLTKPIDPDELFA 1115
>gi|407939108|ref|YP_006854749.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. KKS102]
gi|407896902|gb|AFU46111.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. KKS102]
Length = 1028
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 197/612 (32%), Positives = 287/612 (46%), Gaps = 104/612 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
+ARAE A KS FLA +SHEIRTPMN V+GM + + T+L Q DY + SG+ L+
Sbjct: 259 RARAEDASQMKSDFLANMSHEIRTPMNAVIGMSHLALGTDLTPRQRDYVEKIQRSGQHLL 318
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
LIND+LD +KIE+G+LE E V F L VLDNV +L S K KG+EL V +P+ +
Sbjct: 319 GLINDILDFSKIEAGKLEVEVVDFDLRGVLDNVANLVSDKCAHKGLELLFDVDPALPDDL 378
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GDP R QI+ V + +
Sbjct: 379 RGDPLRLGQIL--------------------------------------------VNYAN 394
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+ V T +G +V R E D+T + L V+DTG+G+ E Q R+F
Sbjct: 395 NAVKFTDTGEIIV-RVTETER----DDTGVL-------LRFEVQDTGIGLTTEQQSRLFR 442
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+ST+R YGGTG+GL+IS+ L LMGGE+G S+PG GSTF FT G
Sbjct: 443 SFEQADTSTTRKYGGTGLGLAISKKLAGLMGGEVGVQSQPGVGSTFWFTARLGLG----- 497
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+P +P + RG LV+DD + L R+ V A+S + A +
Sbjct: 498 NPSHAPLLP-TPDLRGRHVLVVDDSEQARHILGEMLARMSFTVTTASSGEEAVAQARVAE 556
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
++A V D G H L Q + P ++ + + +
Sbjct: 557 QAGRPCEIAFVDWKMPGMD---GFDTHRALAQLQHP---------PHTVIVTAAGRDDVQ 604
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQE---DPESSKKLQQKRKKPSLGHL--LKGKQILV 1086
EL+ G+ +L+KP+ S L + S + + HL + G ++L+
Sbjct: 605 SELECAGLQLMLSKPVSPSQLFDAAMQALGGQARSSDGRAAQAPRRAAHLSAIAGARVLL 664
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFDACFMDLQMPEMDGFQA 1144
VDDN +N++V L G +V G+ A+D L TP +D MD+QMPEMDG A
Sbjct: 665 VDDNDLNQQVGAELLSGAGLVVDVAQNGQVALDMLAQTP---YDLVLMDMQMPEMDGLTA 721
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T RHL N +P+LAMTA+ + + C++ GM+ +++
Sbjct: 722 T---RHLRQ-----------------NPAWAQLPVLAMTANAMSRDRDLCLEAGMNGHLA 761
Query: 1205 KPFEDEQLYTAV 1216
KP + ++L+ A+
Sbjct: 762 KPIDPDELFAAL 773
>gi|16761737|ref|NP_457354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29143221|ref|NP_806563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213163046|ref|ZP_03348756.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|378961034|ref|YP_005218520.1| Signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|25308233|pir||AI0860 sensor protein [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16504038|emb|CAD06072.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi]
gi|29138854|gb|AAO70423.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|374354906|gb|AEZ46667.1| Signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
Length = 918
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VPE VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPENVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT + P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PAb1]
gi|416881857|ref|ZP_11921716.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
152504]
gi|334835543|gb|EGM14411.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
152504]
Length = 918
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 204/656 (31%), Positives = 311/656 (47%), Gaps = 114/656 (17%)
Query: 572 TAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSH 631
+ + + V ++TL +G +RI ++ + + +A + AKS+FLA +SH
Sbjct: 363 SVVKIGMTVELVTLSIG-----LADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSH 417
Query: 632 EIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691
EIRTP+NGVLGMLQ+L DT LD Q Y +T +SG L+S+IND+LD A+IESG+L E
Sbjct: 418 EIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGSALMSVINDILDYARIESGKLHLE 477
Query: 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIK 751
+ F L ++L + L+LFS++A +K + L + + VP + GDP R RQ++ NL+ N++K
Sbjct: 478 RIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALK 537
Query: 752 FTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWE 811
FT + GH+ V V D + E+ L SV
Sbjct: 538 FTAE-GHVAVRVQRRFDESGR--------ERLLYSVS----------------------- 565
Query: 812 NFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGL 871
D+G+GI +AQ +F F QADSST+R YGG+G+GL
Sbjct: 566 ------------------------DSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGL 601
Query: 872 SISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT----EGERNSLDPKWQQYVPDVSEFRG 927
+ISR LV++MGG I SEPG G+ FS + + GE + L + Q+ P
Sbjct: 602 AISRELVQMMGGRIEVSSEPGKGTRFSVDLPLSPALEAGEADEL-AQLLQHRP------- 653
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
AL+ + ++ + + L+R + V + +YL D + +L A
Sbjct: 654 --ALLASEDNLTLDCLQALLERWGLRVERCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPS 711
Query: 988 VWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTL-LTKP 1046
+W L+ L+Q +R I LL + +D +G+ L L +P
Sbjct: 712 IWLD----TLYAQLEQGQR------------ILLLCP--PQHCQDLPPHEGLRLLALAQP 753
Query: 1047 LRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGA 1106
+ + L E ++ + + + L ILV +DN VN+ V G L K G
Sbjct: 754 VAVKALREALLELYRERRRQPGRSSEAAPDERLDAPCILVAEDNPVNQLVVRGFLAKRGY 813
Query: 1107 IVTCVDCGRAAVDK-LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESS 1165
V GR A+D+ L P+ MD +MPEMDGF+AT IR E+ A G
Sbjct: 814 AVRLAGNGRLALDEYLRDPNGIQLILMDGEMPEMDGFEATRLIRR------EERAQG--- 864
Query: 1166 AEMFGNVGLW-HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
W VPI+A+TA ++ ++ GMD Y+ KP + +LY + R
Sbjct: 865 ---------WPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELYATLERLL 911
>gi|292487219|ref|YP_003530091.1| sensor histidine kinase/response regulator [Erwinia amylovora
CFBP1430]
gi|292900406|ref|YP_003539775.1| two-component system, sensor kinase and response regulator [Erwinia
amylovora ATCC 49946]
gi|428784150|ref|ZP_19001642.1| sensor histidine kinase/response regulator [Erwinia amylovora
ACW56400]
gi|291200254|emb|CBJ47382.1| two-component system, sensor kinase and response regulator [Erwinia
amylovora ATCC 49946]
gi|291552638|emb|CBA19683.1| sensor histidine kinase/response regulator [Erwinia amylovora
CFBP1430]
gi|426277289|gb|EKV55015.1| sensor histidine kinase/response regulator [Erwinia amylovora
ACW56400]
Length = 909
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 198/630 (31%), Positives = 308/630 (48%), Gaps = 124/630 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L++ Q
Sbjct: 269 LEQMEIQNVELDMAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTTLNSTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY T S +L+S+INDVLD +K+E+G+L E +PF L LD V+ L + A++KG+
Sbjct: 329 DYLHTIERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ IGDP R +QII NL+GN+IKFT + G+I D+R
Sbjct: 389 ELTLNIQSDVPDNAIGDPLRMQQIIVNLLGNAIKFT-ESGNI--------DIR------- 432
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+EK ++ N +M +L V + DT
Sbjct: 433 --VEK-------------------------RALSNNRM-------------ELEVQIHDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI + Q ++F F QAD+S SR +GGTG+GL I++ LV MGGEI F S GSTF
Sbjct: 453 GIGISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + + DP+ + D E + L + ++ + +A + +
Sbjct: 513 WFHINLALNPNAASDPR----IMDCVEGQHLAYVEPNEAAAKA------------VMEML 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI-SRNL 1016
N+ + SY +S L +LA +D +D L++ + Q R LEI + L
Sbjct: 557 NATPMRVSY------SSSLDELA-----QDRYDV---LLMGLPVAQGHR---LEIDEQQL 599
Query: 1017 PKIFLLATSI-------SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQK 1069
I A S+ + ++LK+ G+ L KPL ++ L+ D + +Q
Sbjct: 600 TPILQRANSVIMALPFQMQIYAEDLKARGVTACLIKPLSMTRLLPVL-VDHHYRRDMQ-- 656
Query: 1070 RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
P L +++ VDDN N ++ L++ A + D G AA+ + H D
Sbjct: 657 ---PQAERTLLPLRVMAVDDNPANLKLIGALLEEQVADIVLCDSGEAAIGQARLQH-LDI 712
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMPE+DG +A+ IR L IN PI+A+TA +
Sbjct: 713 ILMDIQMPEIDGIRASELIRQLPQHIN--------------------TPIVAVTAHAMDG 752
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+Q MK GM+DY++KP ++++L +AR+
Sbjct: 753 ERQQLMKAGMNDYLAKPIDEQKLSRLLARY 782
>gi|170727652|ref|YP_001761678.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
gi|169812999|gb|ACA87583.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
Length = 1582
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 200/627 (31%), Positives = 301/627 (48%), Gaps = 132/627 (21%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K +A++A+ AKS FLA +SHEIRTPMN ++GM + ++T+LD Q +Y + S + L+
Sbjct: 831 KQKADSANRAKSDFLANMSHEIRTPMNAIIGMSHLALETDLDRKQRNYIDKVNRSAESLL 890
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+IND+LD +KIE+G+L+ E + F L DVL++V L KA KGIEL +P
Sbjct: 891 GIINDILDFSKIEAGKLDIEKIDFSLEDVLEDVSDLVGFKAKDKGIELLFNTESSLPFYF 950
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GDP R Q++TNL N+IKFT+ + +V+ KV S+N
Sbjct: 951 NGDPLRLSQVLTNLSNNAIKFTE-----------------QGEVQIKVYAHSINE----- 988
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
TN I+L + DTG+G+ E Q+++F
Sbjct: 989 ---------------------------TN-------IELAFEISDTGIGMSKEQQLKLFK 1014
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QADSST+R +GGTG+GL IS+ LVELMGG I F SE G GS F F + T ++L
Sbjct: 1015 AFSQADSSTTRKHGGTGLGLVISQNLVELMGGVISFESEEGVGSCFKFILPLTPA--SAL 1072
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+ Q + D + LV+DD + E+ L+ ++ +A + Q A + L
Sbjct: 1073 ET--QSF--DKVSLENIHVLVVDDNANAREIFANMLEGHGISYSLAANGQQAMALLEQEG 1128
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL---------PKIFLL 1022
++ +VL+D W K G+ G++ +R + PK+ +
Sbjct: 1129 AS-----YQVVLLD---W-KMPGM------------SGVDTARAIQESSLITEKPKVLM- 1166
Query: 1023 ATSISETDRDEL--KSDGI--VTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL 1078
++ R+EL S G+ +LTKP+ S L+ ES + KR K S +
Sbjct: 1167 ---VTAYGREELINLSQGVNFAGVLTKPITSSHLLNTI---LESLGREVNKRSKSSAKEM 1220
Query: 1079 --------LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
L G IL+ +DN +NR + L + G+ A+D L +FD
Sbjct: 1221 MYRAALKQLAGAHILIAEDNDLNRELIVDLLSNNQITSVVAMNGQEAIDCLL-KESFDGV 1279
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD QMP MDG+ AT +IR +E GL +PI+AMTA+ +
Sbjct: 1280 LMDCQMPVMDGYTATKKIREVE--------------------GLSALPIIAMTANAMAGD 1319
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
E+ + CGM D++SKP + + +A
Sbjct: 1320 REKAIGCGMTDHISKPINVQNTFITMA 1346
>gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1202
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 193/634 (30%), Positives = 311/634 (49%), Gaps = 98/634 (15%)
Query: 591 FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
H I+ +VE++ + M AE+A+ +KS+FLA +SHEIRTPMNGV+GM+++L +T
Sbjct: 514 IHKDISDRKRVEDELKKAM---LDAESANRSKSEFLANMSHEIRTPMNGVVGMMELLSNT 570
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
EL Q + +TA NS + L+++IND+LD +KIE+G+LE E + F L +++++V +L +
Sbjct: 571 ELTPEQQSHMRTARNSAESLLTIINDILDFSKIEAGKLELEEIAFDLAELVEDVTALLAQ 630
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
+ + + +EL +P V GDP R RQ++ NLVGN++KFT + G + +VR
Sbjct: 631 RVDSEKLELLHNAPADLPMQVAGDPTRLRQVLVNLVGNAVKFTPE-GEV--------EVR 681
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKL 830
V+ +D L V+ +T G R + + F D + T
Sbjct: 682 MTVERQDADTVTVLTEVR-------DTGIGIDEAVRPRLFRMFTQADGSTT--------- 725
Query: 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
R +GGTG+GL+IS+ LVELMGGE+GF S
Sbjct: 726 -------------------------------RRFGGTGLGLAISKQLVELMGGEVGFSSV 754
Query: 891 PGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRL 950
G GSTF F +TF + K Q V +GLRALV+DD + + +L
Sbjct: 755 MGQGSTFWFRITF------PIVAKAQAVAGGVDSLQGLRALVVDDNATNRNLLGRYLSNW 808
Query: 951 EMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL 1010
+ S + A ++D + LA++ + D GL L + Q + +
Sbjct: 809 GVTHLECASGKQALEKIADAAKFGLSFDLAILDLLMPGMD---GLALAERITQMVQDKQI 865
Query: 1011 EISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR---LSVLIGCFQEDPESSKKLQ 1067
+ P +L TS + R+EL+ G+V L+KP+R L L+G L
Sbjct: 866 K-----PLRMVLLTS-AHARREELEQAGVVAALSKPIRQAQLRALLGQVMRGERVVGGLV 919
Query: 1068 QKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
++ + ++ +L+V+D+ +N++VA G L G V + G V +L H +
Sbjct: 920 ERISQNNMSATFDAA-VLLVEDHPINQQVARGMLAGLGCRVEIANDGHEGV-RLFARHRY 977
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADV 1186
D MD+QMP MDG++ T IR +E W PI+A+TA+
Sbjct: 978 DLVLMDIQMPGMDGYETTDAIRQMERSER------------------WPRTPIVALTANA 1019
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
++ ++C+ MDDY+SKP ++L A++++
Sbjct: 1020 MEQDRDRCLAADMDDYLSKPISLDRLKAAMSKWL 1053
>gi|213648276|ref|ZP_03378329.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 855
Score = 261 bits (666), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VPE VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPENVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT + P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|375012435|ref|YP_004989423.1| PAS domain-containing protein [Owenweeksia hongkongensis DSM 17368]
gi|359348359|gb|AEV32778.1| PAS domain S-box [Owenweeksia hongkongensis DSM 17368]
Length = 1360
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 189/592 (31%), Positives = 288/592 (48%), Gaps = 104/592 (17%)
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S FLAT+SHEIRTPMNGV+GM +L+ T+L+A QLDY T SG L+S+IND+LD +K
Sbjct: 844 SDFLATMSHEIRTPMNGVIGMTSLLLQTKLNAEQLDYVNTIRLSGDALLSVINDILDFSK 903
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
IE+G + E PF + ++ + L SS+ ++KGIEL ++ VP VV GD R RQI+
Sbjct: 904 IEAGNMSLEEFPFEITQCVEEAVELLSSRVSEKGIELLYFIDPSVPAVVSGDITRLRQIL 963
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
NL+ N+IKFT+ KG I V+V S + K D
Sbjct: 964 INLLSNAIKFTE-KGEIVVNV----------------------SAKKKED---------- 990
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
R+++ +V DTG+GI + Q ++FT F QADSST+R
Sbjct: 991 -----------------------SRVQIHFSVRDTGIGITADQQKKLFTAFTQADSSTTR 1027
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT--FTEGERNSLDPKWQQYVP 920
YGGTG+GL+I + L LM GEI S PG GS F FT+ R D ++
Sbjct: 1028 KYGGTGLGLAICKRLTSLMDGEIWVESTPGGGSDFQFTIMQEVIRQHRIETDTNFE---- 1083
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLA 980
+ S G + L++DD ++ + V N+ Q A + T + +
Sbjct: 1084 NDSILYGRKCLIVDDNKTNLKILEKQFNLWGIDVTCFNNPQKAYKQIIKTQNWDFM---- 1139
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV 1040
++D E+ + L ++ R L S+N I LL+++ E ++ S
Sbjct: 1140 -------IFDFEMPGLDGIELAEKIR---LRYSKNELPIILLSSAYPEVSEHKINS-LFS 1188
Query: 1041 TLLTKPLRLSVLIGCF------QEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNR 1094
KP R S+L +++ +S ++ ++ S+ IL+ +DNMVN+
Sbjct: 1189 HYFMKPTRHSILKKSLVKLLTTKDENLNSNAVETDIEELSMLASKHPLTILLAEDNMVNQ 1248
Query: 1095 RVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENE 1154
++A L+K G + V G ++ + ++D FMD+QMPEMDG +AT +I +
Sbjct: 1249 KLAVLTLEKMGYHMDVVANGFEVLEAI-ERQSYDLIFMDVQMPEMDGIEATHEILRI--- 1304
Query: 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
G I+AMTA+ ++ E+ ++ GMDDY+SKP
Sbjct: 1305 -----------------YGHNRPSIVAMTANAMEGDRERFLEEGMDDYISKP 1339
>gi|77359054|ref|YP_338629.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
gi|76873965|emb|CAI85186.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125]
Length = 1120
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 194/652 (29%), Positives = 317/652 (48%), Gaps = 115/652 (17%)
Query: 580 VVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNG 639
++ + LVG ++ + ++E + +++ K AE A AKS+FLA++SHEIRTPMNG
Sbjct: 570 LIAVAALVGSLYSSQ----KRIETE-QQLVTAKETAEQAVAAKSEFLASMSHEIRTPMNG 624
Query: 640 VLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699
VLGML ++ +T+LD Q+ + + A +S + L+++IND+LD +KIE+G+L+ E + F+L
Sbjct: 625 VLGMLNIVKNTKLDQQQMHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIEKIQFNLPR 684
Query: 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHI 759
+L V+ F+ KA Q L + + ++ DP R RQI++NL+ N++KFT D G I
Sbjct: 685 LLGEVVESFALKAEQNNTILILDATLITVSEIVSDPNRLRQILSNLISNAVKFTFD-GKI 743
Query: 760 FVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNT 819
V +K+D + D T
Sbjct: 744 V--------VTAKID---------------------------------------ETTDGT 756
Query: 820 NTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVE 879
+ L+ ++ DTG+GI E +F F QAD+ST+R YGGTG+GL+I + L E
Sbjct: 757 S---------LVCSIIDTGIGIKPEKHSTLFDSFTQADTSTTRQYGGTGLGLAIVKQLCE 807
Query: 880 LMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKW--QQYVPDVSEFRGLRALVIDDKS 937
LMGGE+ S GSTFSF++ + PK QQ +P + L+ID
Sbjct: 808 LMGGEVSVTSMLNEGSTFSFSI--------KIKPKLSKQQDLPS-HLIKNKHILIIDSCL 858
Query: 938 IRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVL 997
+ + + + L + + +Y D +T+ L +LID
Sbjct: 859 LNSTIAKKQLIIWQANANTLTDYTAVSAYFKDQATTT----LDAILID------------ 902
Query: 998 HYMLKQQRRKGGLEISRNLPK---IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIG 1054
+Y +Q + E+ L K ++ +S + D S + +++ KPL S L
Sbjct: 903 YYFFEQAPQSQITEVKNYLAKHSCKLIIMAPMSYSKDDSTLSLKVDSMIFKPLTPSDLFD 962
Query: 1055 CFQEDP--ESSKKLQQKRKKPSLGHLLKGK--QILVVDDNMVNRRVAEGALKKHGAIVTC 1110
D E ++ Q + K + L+ Q+L+V+DN +N+ VA LK+ G
Sbjct: 963 SLANDKYIEQQQQQAQLQNKLTETPLVNTNEPQVLLVEDNKINQVVAGALLKQAGISFDI 1022
Query: 1111 VDCGRAAVDKLT--PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEM 1168
+ GR A+ +L P + + MD QMPEMDG+QAT IR+ G+S
Sbjct: 1023 AENGREAIKQLNEQPANTYQLILMDCQMPEMDGYQATKAIRN-----------GDSGKHY 1071
Query: 1169 FGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
++ I+A+TA+ +Q E+C+ GM+DY+SKP + L+ + ++
Sbjct: 1072 ------QNITIIALTANAMQGDKEKCLAAGMNDYLSKPLDFSALHPKLQQWL 1117
>gi|414071079|ref|ZP_11407054.1| putative sensor protein [Pseudoalteromonas sp. Bsw20308]
gi|410806467|gb|EKS12458.1| putative sensor protein [Pseudoalteromonas sp. Bsw20308]
Length = 1120
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 202/659 (30%), Positives = 315/659 (47%), Gaps = 119/659 (18%)
Query: 560 HCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAAD 619
CR K+ WT N ++ + L+G + H++ RI E++ K AE A
Sbjct: 556 QCRIKRN----WTK-NEESFLIAVAALIGSL-HSSQQRI----ETEQELVTAKETAEQAV 605
Query: 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLD 679
AKS+FLA++SHEIRTPMNGVLGML ++ T+LD Q + + A +S + L+++IND+LD
Sbjct: 606 AAKSEFLASMSHEIRTPMNGVLGMLNIIKQTKLDQQQEHHIELAQSSAQSLLNIINDILD 665
Query: 680 QAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFR 739
+KIE+G+L+ + V F+L +L V+ F+ K Q +L + + +I DP R R
Sbjct: 666 FSKIEAGKLDIDNVQFNLPKLLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLR 725
Query: 740 QIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLS 799
QI+ NL+GN++KF TL+
Sbjct: 726 QILNNLIGNAVKF--------------------------------------------TLN 741
Query: 800 GFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS 859
G ++ K+ D TN G L ++ DTG+GI + Q +F F QAD+S
Sbjct: 742 GEVIIVA-------KINDTTN-----GSF-LQCSIIDTGIGIDFKKQATLFNSFTQADAS 788
Query: 860 TSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKW--QQ 917
T+R +GGTG+GL+I + L ELM GE+G S G GSTFSFT+ + P+ +Q
Sbjct: 789 TTRQFGGTGLGLAIVKQLCELMNGEVGVTSVKGQGSTFSFTI--------KIQPRLSKEQ 840
Query: 918 YVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLP 977
+P + L+ID+ S+ A L +V N Q +Y S + +
Sbjct: 841 DLPS-HLIKNKHILIIDECSLNANTASKQLSVWGASVECINDYQQILNY-----SHNEVQ 894
Query: 978 QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSD 1037
+LID ++K + + KG + I K+ ++A +S + + +
Sbjct: 895 NTDAILIDYYFFEKASPECITAL------KGFINIQG--CKLVIMA-PMSYSKEESKLAI 945
Query: 1038 GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK----QILVVDDNMVN 1093
I ++ KPL S L D ++ +Q + + L ++ QIL+V+DN VN
Sbjct: 946 KIDCMIFKPLTPSDLFDSLTNDQFIERQQKQAQLQNKLTKMVATNFSQPQILLVEDNKVN 1005
Query: 1094 RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN--FDACFMDLQMPEMDGFQATWQIRHL 1151
+ VA LK+ G G A+ KL ++ MD QMPEMDG+QAT IR
Sbjct: 1006 QVVASALLKQAGVSFDIAQNGFEAIVKLNTKQGEPYELILMDCQMPEMDGYQATQAIRK- 1064
Query: 1152 ENEINEQIASGESSAEMFGNVGLW--HVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
G+ G + ++ I+A+TA+ +Q ++C+ GMDDY+SKP +
Sbjct: 1065 ------------------GDAGKYNKNITIIALTANAMQGDKDKCLAAGMDDYLSKPLD 1105
>gi|213416867|ref|ZP_03350011.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 735
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 135 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 194
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 195 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 254
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VPE VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 255 ELTLNIKNDVPENVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 296
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 297 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 318
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 319 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 378
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 379 WFHINL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 418
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT + P AL L D+ + + L Q + L + +
Sbjct: 419 ------LDLLSDTPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 470
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 471 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 525
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 526 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 584
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 585 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 624
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 625 LLSAGMNDYLAKPIEEEKLHNLLLRY 650
>gi|449143910|ref|ZP_21774729.1| hypothetical protein D908_03252 [Vibrio mimicus CAIM 602]
gi|449080441|gb|EMB51356.1| hypothetical protein D908_03252 [Vibrio mimicus CAIM 602]
Length = 1325
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 198/625 (31%), Positives = 297/625 (47%), Gaps = 112/625 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ E K A+A AK FLA +SHEIRTPMN +LGM + ++T+LDA Q Y +
Sbjct: 591 QELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINE 650
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S K+L+ +IND+LD +KIE+G+L E + F L DVLDNV ++ S KA +KGIE + +
Sbjct: 651 SAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDP 710
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P +IGDP R Q++ NL GN++KFTQ +G I +S + +V + V + +
Sbjct: 711 HIPLGLIGDPLRLGQVMVNLCGNAVKFTQ-QGEIVISARVRQLNEQQVMLLFAVKDTGIG 769
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
Q K D ++N F DN+ T
Sbjct: 770 IAQEKLDDLFNA---------------FSQADNSIT------------------------ 790
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ----------------RQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGL 834
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
E K + + R LV+DD + A ++ +S+ A
Sbjct: 835 QE-----AKMRDIAQPLYGLANKRVLVVDDN--------------DSARNILDSLLTAMR 875
Query: 966 YLSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
+ T S L +L D D + + L + + GL R+ K FL+
Sbjct: 876 FNVVTVSNGFEALSELQHKPFDMLFVDWNMPGMNGIELLTRVKSLGL---RDHTKCFLVT 932
Query: 1024 TSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQ-QKRKKPSLGHL 1078
+ + D S I L+ KP+ L ++ + D K+ + + +P+
Sbjct: 933 AYGRDINLDSENSKLIDALIVKPVNPSNLLDAIVTSYGIDHVRHKQNELPQHSRPNFA-- 990
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
G+++L+V+DN VN+ VA G L++ G VT + G+ A++KL +FD MD+QMP
Sbjct: 991 --GQKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENA-DFDLVLMDMQMPV 1047
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKC 1197
MDG AT IR G W ++PI+AMTA+ + A E+C++
Sbjct: 1048 MDGITATKHIR---------------------TNGRWKNLPIVAMTANAMAADIERCLQV 1086
Query: 1198 GMDDYVSKPFEDEQLYTAVARFFMS 1222
GM+ ++SKP E ++ Y + +F S
Sbjct: 1087 GMNGHLSKPIEVDKFYQVLKQFLKS 1111
>gi|423141457|ref|ZP_17129095.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379050629|gb|EHY68521.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 918
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 192/624 (30%), Positives = 300/624 (48%), Gaps = 110/624 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ + A+ T + +
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCT----------LDLL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
N + Y S T S AL L D+ + + L Q + L + ++
Sbjct: 557 NDTPVEVVY-SPTFS-------ALPLAHYDIMMLSVPVTFREPLTMQHER--LAKAASMT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
LLA ++ + ++LK G L KPL + L+ E + + +P L
Sbjct: 607 DFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHAEPLLM 661
Query: 1077 HLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
K ++ VDDN N ++ L+ V D G AVD+ FD MD+Q
Sbjct: 662 DASKIAMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMDIQ 720
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 721 MPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLL 760
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARF 1219
GM+DY++KP E+E+L+ + R+
Sbjct: 761 SAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|430747804|ref|YP_007206933.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430019524|gb|AGA31238.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 912
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 210/706 (29%), Positives = 324/706 (45%), Gaps = 118/706 (16%)
Query: 530 INMYGPDVTDTGLLRVSNLDFGDPS-----RKHEMHCRFKQKPPVPWTAINASIGVVVIT 584
I PD DT L + L G P+ R + H ++ + W+A
Sbjct: 171 IQFVHPDDVDTTLGEMQTLSAGIPTLAFENRYRDTHGSYRH---LVWSASPEP------- 220
Query: 585 LLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGML 644
G I+ A + + Q ++ E+ K AEAA+ AK FLA VSHEIRTPMN +LGM
Sbjct: 221 -RTGLIYGIARD-VTQAKHAEEELRLAKETAEAANRAKDAFLANVSHEIRTPMNAILGMT 278
Query: 645 QMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNV 704
++ +DT L Q Y T S L+S+IND+LD +KIE+G+LE +F F L VL
Sbjct: 279 ELTLDTPLTDEQRKYLATVKTSADALLSVINDLLDFSKIEAGKLELDFADFSLRRVLGET 338
Query: 705 LSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH 764
L + +A++KG+EL + VP+ +IGD GR RQ++ NL+GN+IKFT+ +G I V V
Sbjct: 339 LRALAFRAHRKGLELVCQIQPDVPDALIGDAGRLRQVLLNLIGNAIKFTE-QGEIVVRV- 396
Query: 765 LADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQ 824
+ KD + L S + +T G P+ + K ++ F+ D
Sbjct: 397 ---ETVPAPGTKDSIPPGLLFS-------IVDTGIGIPLDKQQKIFQAFEQQD------- 439
Query: 825 LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGE 884
SST+R YGGTG+GLSI+ LV LMGG+
Sbjct: 440 ---------------------------------SSTTRKYGGTGLGLSIASQLVALMGGQ 466
Query: 885 IGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR 944
I S PG GSTF FTV F E + +D +++ + D+ GLR L++DD + +
Sbjct: 467 ITVESVPGRGSTFCFTVHFAE-HPHPIDHPFERPLTDL---HGLRILIVDDNATNRHILE 522
Query: 945 YHLQRLEM-AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
L+ + V + ++ + ++ +LVL+D + + GL L + Q
Sbjct: 523 EWLRSWKTDPTSVGDGLKALDALWR---GVALGRPFSLVLLDARMPGTD-GLALAASILQ 578
Query: 1004 QRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE----- 1058
E+S + +I LL + D ++ GI KP++ L+
Sbjct: 579 SP-----ELSAS--RIILLTSEDLHGDIARYRTLGIAAYTMKPVQQEELLEIIHRVLSRP 631
Query: 1059 ------DPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVD 1112
P ++ G L+ +LV +DN +N+ + E L++ G V V
Sbjct: 632 TPAEPAAPTATTTSPVPVDPAESGSRLR---VLVAEDNPLNQELVEHLLRRRGHDVVVVG 688
Query: 1113 CGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNV 1172
G A++ + H+FD +D+ MPE DGFQ +R E E
Sbjct: 689 DGLEALNAID-RHDFDLSLLDVHMPEFDGFQVIEAVRQREQSTGE--------------- 732
Query: 1173 GLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
H+P++AMTA ++ E+C++ GMDDY++KP L+ + R
Sbjct: 733 ---HLPVIAMTALAMKGDRERCLEAGMDDYLAKPIRASALFAVIDR 775
>gi|427419449|ref|ZP_18909632.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425762162|gb|EKV03015.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 923
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 211/640 (32%), Positives = 308/640 (48%), Gaps = 111/640 (17%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
Q+++ + + E K +AE A AKSQFLA +SHEIRTPMNGV+G +L++T+L Q +Y
Sbjct: 358 QIQSQFETIREEKKKAEIASQAKSQFLANMSHEIRTPMNGVIGTTSLLLNTDLSFEQQEY 417
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
NS L+ +IND+LD +KIESG + E F L +++VL LF+S+A +K ++L
Sbjct: 418 VDIIQNSSDSLLGVINDILDFSKIESGYMVLEESSFELRHCIEDVLDLFASEALEKNLDL 477
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
++ VP + GD R RQI+ NLV N+IKFT +KG + +SV L R + K
Sbjct: 478 LYQIASDVPRCIQGDLNRLRQILMNLVSNAIKFT-EKGEVLISVRL----RQSASLNSKT 532
Query: 780 LE-KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTG 838
++ K+L ++Q + FP++ L V+DTG
Sbjct: 533 IDSKTLETIQPE----------FPII-------------------------LEFFVKDTG 557
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
+GIP++ ++F F Q D+ST+R YGGTG+GL+I + LV LM GEI S+ G GSTF
Sbjct: 558 IGIPIDGIPKLFKDFSQVDNSTTRKYGGTGLGLAICKRLVTLMRGEIWVASDVGQGSTFY 617
Query: 899 FTVTFTEGERNSLDPKWQQYV-PDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F++ + D + Q ++ P VS + R L++DD V + + A
Sbjct: 618 FSM-----QTRLADAQSQLHLNPQVSVLQACRVLIVDDSHASCTVLAEQCSQWGLKPDTA 672
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
S Q A L Q L +ID + + GL L QQ R L++ +LP
Sbjct: 673 PSAQAALGGLKRG------QQFDLAIIDVQMPGMD-GL----ELVQQIR--SLQLDFSLP 719
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLR-------LSVLIGCFQEDPESSKKLQQK- 1069
I L A S D++EL LTKP++ ++ L+ Q + S+K Q
Sbjct: 720 CIMLGAVS-KPHDKEEL----FDAWLTKPIKYANLWKAITDLVKAQQNSQQYSEKQQNNC 774
Query: 1070 ----RKKPSLGHLLKGK-------------QILVVDDNMVNRRVAEGALKKHGAIVTCVD 1112
+ + L G +ILV +DN VN+ V L K
Sbjct: 775 DTTAKSFSQDANSLSGAHGSGNGSGNHPPLRILVAEDNPVNQMVVLRILAKLDYSGDLAA 834
Query: 1113 CGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNV 1172
G ++ L +D FMDLQMPE+DG +AT QI E +G
Sbjct: 835 NGLEVLEAL-ERQPYDIIFMDLQMPEIDGLEATEQI-----------------IEKWGED 876
Query: 1173 GLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
I+A TA+V Q C GMDDY+SKP+ EQ+
Sbjct: 877 ---RPKIIAATANVQQEDQAACFAAGMDDYISKPYALEQI 913
>gi|365097211|ref|ZP_09331456.1| multi-sensor hybrid histidine kinase [Acidovorax sp. NO-1]
gi|363413505|gb|EHL20701.1| multi-sensor hybrid histidine kinase [Acidovorax sp. NO-1]
Length = 1631
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 197/622 (31%), Positives = 297/622 (47%), Gaps = 103/622 (16%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ K AE + KS FLA +SHEIRTPMN ++GM + + + L Q DY
Sbjct: 857 QELRRAKELAEESTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLSDRQHDYVSKIQQ 916
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
+G+ L+ +IND+LD +KIE+G+L E PF L +LD+V + KA KG+EL V+
Sbjct: 917 AGQHLLGVINDILDFSKIEAGKLVVEKHPFALDHMLDSVADVVGYKAGAKGLELVCDVAP 976
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VP +IGD R QI+ N N+IKFT+ R ++ + +++E +
Sbjct: 977 DVPPNLIGDSLRMGQILINFANNAIKFTE---------------RGEISIAVRLMESEGS 1021
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
R+ L V DTG+G+ E
Sbjct: 1022 -----------------------------------------RVLLRFEVRDTGIGLTPEQ 1040
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
R+F F QAD+ST+R YGGTG+GL+I + L ELMGGE+G S G GSTF TV
Sbjct: 1041 MGRLFQSFQQADTSTTRRYGGTGLGLAICKSLAELMGGEVGVESIFGQGSTFWVTVPLER 1100
Query: 906 G--ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
G R L P PD+ RG R LV+DD A V L + V A+S A
Sbjct: 1101 GAPARVLLPP------PDL---RGRRVLVVDDNQTAATVLSDMLTSMGFDVEQAHSGLEA 1151
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
L ++ + L+L+D + + G+ L +K GL +++ +PK+ ++
Sbjct: 1152 LDRLRESMARH--QPFGLLLLDWHMPGMD-GIQLAGHIK------GLGMAQ-VPKMLMVT 1201
Query: 1024 TSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQK--RKKPSLGHL--- 1078
E + GI T+L KP+ S+L + E + ++ P+ L
Sbjct: 1202 AYGREDVMRAARLQGIDTVLIKPVNASLLFDTLMQPLEHAPAAPRRVVATAPAAEQLPLE 1261
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
++G +L+V+DN +N+ VA L+ G V + G AA+D + +D MD+QMP
Sbjct: 1262 IRGASVLLVEDNELNQMVAVELLRDAGFAVDVAENGEAAIDCIE-RKAYDVVLMDMQMPV 1320
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG AT ++R N + Q+ PI+AMTA+ ++A ++C G
Sbjct: 1321 MDGETATRRLR--SNPRHAQL------------------PIVAMTANAMEADRQRCFAAG 1360
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
M+D+V+KP E L+ A+ R+
Sbjct: 1361 MNDHVAKPIEPAALWAALGRWI 1382
>gi|23014385|ref|ZP_00054204.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 1193
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 195/616 (31%), Positives = 294/616 (47%), Gaps = 102/616 (16%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A AKS FLAT+SHEIRTPMNGVL M Q+L D L A Q + A+ +S L+++I
Sbjct: 523 AEEASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPLPAEQREMARVIRDSATSLLTII 582
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+ +L+ E V L ++++ V L + +A +KGI L ++ + ++VIGD
Sbjct: 583 NDILDFSKIEADKLQLELVELSLSELVEGVADLLTIRAQEKGISLITFIDPALTDMVIGD 642
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P R RQIITNL GN+IKFT DKG++ +SV +D +++ L N
Sbjct: 643 PIRLRQIITNLAGNAIKFT-DKGYVRISVR-------ALDPRERPLRLEFN--------- 685
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
+ DTG+G+ E Q R+F PFM
Sbjct: 686 ---------------------------------------ITDTGIGLDSEQQARLFEPFM 706
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD + SR YGGTG+GLSI R LV +M GEIG S G GSTF F V E + P
Sbjct: 707 QADVTISRRYGGTGLGLSICRRLVAMMDGEIGVRSNMGQGSTFWFQVPL---EPADVAP- 762
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
+ PD+S G+ LV+ + + AE R +L L V V + A + +
Sbjct: 763 --EETPDLS---GIAVLVLAEGPVAAECLRQYLGHLGAQVAVVVGAEGAVAAVRAAALAG 817
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
+AL L D + +G+ M G ++ L L+A E+
Sbjct: 818 WTYDVAL-LDDGQDFRMRLGVAGALMT-----AAGPDL--ELKVALLVAKEAFAAVASEI 869
Query: 1035 KSDGIVTLLTKPLR-------LSVLIGCFQEDPESSKKL--QQKRKKPSLGHLLKGKQ-I 1084
K+ G+ L KP+R ++V +G + ES+ + ++ + P+ I
Sbjct: 870 KAAGLYAALPKPIRRRQLWRNVAVAVGRAMPEAESADGVGAEEGWRPPTTEEAAAAGALI 929
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
LV +DN N+ V +++ G + V G A +++ ++ D MPEMDG++
Sbjct: 930 LVAEDNPTNKVVIRHLMERLGYAIEVVGNGAEAWERMQ-IRDYGLLLTDCHMPEMDGYEL 988
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T +IR E E + PI+A+TAD + + +C+ CGM+ +++
Sbjct: 989 TQRIREWEVETGHLL------------------PIVALTADALAGTARRCLDCGMNAFLA 1030
Query: 1205 KPFEDEQLYTAVARFF 1220
KP + QL + R
Sbjct: 1031 KPIDLIQLDATIRRLL 1046
>gi|392411875|ref|YP_006448482.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390625011|gb|AFM26218.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1269
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 192/628 (30%), Positives = 301/628 (47%), Gaps = 118/628 (18%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
+L+ +AE A +AKS+FLA +SHEIRTPMN ++G + + T+L + Q DY +S K
Sbjct: 510 QLRTQAEFATLAKSEFLAKMSHEIRTPMNAIIGFAGLALKTDLTSKQRDYLSKIDSSAKT 569
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+ +IND+LD +KIE+G+L+ E + F L +V++ + ++ S KA++K +EL + VP
Sbjct: 570 LLGIINDILDFSKIEAGKLDLESIDFQLDEVINGIANMVSVKASEKDLELISQIGSNVPA 629
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
L+G+ ++ Q V V+L ++ K +L K N
Sbjct: 630 A--------------LIGDPLRLGQ------VLVNLVNNA-VKFTEHGHILIKVENVKNS 668
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
+D V L +V DTG+G+ + R+
Sbjct: 669 YTDCV-----------------------------------LKFSVTDTGIGMTPDQMTRL 693
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
F F QAD+S +R +GGTG+GL+IS+ LVE+MGG+I SE G GSTFSF++ F R
Sbjct: 694 FAAFSQADTSVTRKFGGTGLGLTISKHLVEMMGGQISVESELGRGSTFSFSIEFGRASRE 753
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
K +Q VP S GL+ LV+DD EV L L+ V A S + A S L
Sbjct: 754 ----KRRQLVPPQS-VEGLKVLVVDDNPTAREVLVEQLDSLKFRVMSAPSARAAISELKR 808
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL---------PKIF 1020
+ + LV++D W + G+E SR + P I
Sbjct: 809 SSAQDA--PYDLVVMD---W-------------KMPEMDGIEASRVIRNDADLQHAPSII 850
Query: 1021 LLATSISETDRDELKSDGIVTLLTKP----LRLSVLIGCFQEDPESSKKLQQKRKKPSL- 1075
++ E + GI L KP L ++ F +P S+ +Q++ P++
Sbjct: 851 MVTAFGREDVMTRAEEVGINGFLMKPVTPSLMFDTIMQVFGHEP-STGTIQRRAAAPAVE 909
Query: 1076 ---GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
L++G ++L+V+DN +N++VA L G V + G+ AV+ + +D M
Sbjct: 910 PDFADLIEGAKVLLVEDNALNQQVANEILAGAGLFVEIANNGKEAVEAVETSE-YDLVLM 968
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP M G++AT IR N +PI+AMTA ++ + E
Sbjct: 969 DVQMPVMGGYEATAVIRK--------------------NPRFKDLPIVAMTAHAMRGAKE 1008
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+C+ GM+DYVSKP + QL++ + R+
Sbjct: 1009 ECLNAGMNDYVSKPIDPAQLFSVLVRWI 1036
>gi|171060213|ref|YP_001792562.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170777658|gb|ACB35797.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1603
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 190/603 (31%), Positives = 285/603 (47%), Gaps = 98/603 (16%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+FLA +SHEIRTPMN +LGML +L TEL Q DY + + L+ L+ND+LD +
Sbjct: 852 KSEFLANMSHEIRTPMNAILGMLALLHKTELAPRQADYVAKTEGAARSLLRLLNDILDFS 911
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
K E+ R+ E PF + +L ++ + S+ K +E+ + +P ++GD R +Q+
Sbjct: 912 KAEAERMVLEARPFRIDQLLRDLSVILSANIGGKEVEVLFDIDPTLPRALVGDAMRLQQV 971
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL GN+IKFT + +V V V E+S
Sbjct: 972 LINLGGNAIKFTAE---------------GEVVVSVAVRERS------------------ 998
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
LG + L + V DTG+GI E Q RIF+ F QA++ST+
Sbjct: 999 ----------------------ALG-VTLQIAVRDTGIGIAAENQARIFSAFTQAEASTT 1035
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R +GGTG+G++IS+ LV LMGGE+ SEPG GS F F +T + P
Sbjct: 1036 RRFGGTGLGVAISQRLVALMGGELQVASEPGRGSRFHFCITLPVAPEPADGP-----ADS 1090
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
L ALV+DD I +V + L V +A S + A + + Q L
Sbjct: 1091 PPRLAALHALVVDDHPIARDVLGGMCRSLGWQVDLAVSGEQALALMHAQAGAGNSYQAVL 1150
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE--TDRDELKSDGI 1039
V D ++ + + ++ R+ GL+ + P + ++ E R E + +
Sbjct: 1151 V-------DWQMPGLDGWETARRIRERGLDGA--APIVVMVTAHGRELLAQRSEREPGVL 1201
Query: 1040 VTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG-HLLKGKQILVVDDNMVNRRVAE 1098
L KP+ S+L + + Q + + ++G H L G ++L+V+DN N++VA
Sbjct: 1202 DGFLVKPVTASMLFDAIADARPAQPGPQARARNGAVGLHRLAGLRLLLVEDNPTNQQVAR 1261
Query: 1099 GALKKHGAIVTCVDCGR---AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEI 1155
L + GAIV + G AV T P FD MDLQMP MDG+ AT +IR
Sbjct: 1262 ELLTQEGAIVQIANHGEEAVVAVAAATRP--FDVVLMDLQMPVMDGYTATRRIRQ----- 1314
Query: 1156 NEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTA 1215
N+GL +PI+AMTA+ + E C+ GMDD+V KPF+ + L
Sbjct: 1315 ---------------NLGLTRLPIVAMTANAMSTDREACLAAGMDDHVGKPFDIDHLVQV 1359
Query: 1216 VAR 1218
+ R
Sbjct: 1360 LRR 1362
>gi|343497197|ref|ZP_08735273.1| two-component system sensor protein [Vibrio nigripulchritudo ATCC
27043]
gi|342819664|gb|EGU54503.1| two-component system sensor protein [Vibrio nigripulchritudo ATCC
27043]
Length = 1063
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 205/662 (30%), Positives = 321/662 (48%), Gaps = 112/662 (16%)
Query: 574 INASIGVVVITLLVGHIFHAA--INRIAQVENDYHEMMELKARAEAADVAKSQFLATVSH 631
+ A IG+ + L G I A I I + + E+ A+A+ A KS FLA +SH
Sbjct: 253 VPAEIGMTIFQL--GDICQATLFIRDITERKLAERELNAAMAKAKEAVEVKSMFLANMSH 310
Query: 632 EIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691
EIRTPMN ++GM + + T++ Q DY H+SG L+ +IND+LD +KIE+G+LE E
Sbjct: 311 EIRTPMNAIIGMAHLALKTDMSPKQRDYVSKIHSSGTLLLGIINDILDFSKIEAGKLEME 370
Query: 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIK 751
+ F L DV NV ++ KA +K +EL ++ +P+ L+G+ ++
Sbjct: 371 SIEFTLDDVFRNVSTVTGQKAFEKNLELLFHIPRTIPQ--------------QLIGDPLR 416
Query: 752 FTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWE 811
Q V ++L + NSV K E
Sbjct: 417 IGQ------VIINLVN-----------------NSV--------------------KFTE 433
Query: 812 NFKMLDNTNTMEQLG-RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIG 870
++ + + +EQ+G RI+L TV DTG+G+ E R+FT F QAD ST+R YGGTG+G
Sbjct: 434 QGEITVSVDLLEQIGDRIELEFTVADTGIGMTREQSSRLFTAFTQADGSTTRKYGGTGLG 493
Query: 871 LSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER-NSLDPKWQQYVPDVSEFRGLR 929
LSI R LVELMGG I SEP GS F F V F ++ S + PD+ L+
Sbjct: 494 LSICRRLVELMGGTIRVDSEPDEGSRFVFNVWFDLADQIASSKDRLTALRPDM--LDELK 551
Query: 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVW 989
L++DD E+ L+ L + VA++ + A + +LVL+D W
Sbjct: 552 VLIVDDNRHAVEIMSEMLETLPIQPEVAHNGKEAFDMVEQHIKDE--NPYSLVLMD---W 606
Query: 990 D-KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDG----IVTLLT 1044
+ E+ + + R G E +LPK+ + ++ D+DE+K I LT
Sbjct: 607 NMPELNGI--ETVSMMRDNIGNE---SLPKVVM----VTAYDKDEVKKASNDIEIANYLT 657
Query: 1045 KPLRLSVLIGCFQE---DPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGAL 1101
KP+ S L C E D + + ++ ++ + KG ++L+ +DN +N+++A +
Sbjct: 658 KPVSQSSLYDCLIELFTDVDRALEIAEEVRSED-NDEFKGLRVLLTEDNEINQQIAFELM 716
Query: 1102 KKHGAIVTCVDCGRAAVDKLTPPHN----FDACFMDLQMPEMDGFQATWQIRHLENEINE 1157
G VT + G+ A++ L+ FD FMDLQMP MDG++A+ +IR
Sbjct: 717 SGKGMEVTIANNGKEALEHLSESGEGEVPFDIMFMDLQMPVMDGYEASKRIR-------- 768
Query: 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
N +P++AMTA + E+C+ GM+D++SKP + E LY +
Sbjct: 769 ------------SNCRYADIPLIAMTAHAMVEERERCLNLGMNDHISKPIDPETLYQLIR 816
Query: 1218 RF 1219
++
Sbjct: 817 KW 818
>gi|394987646|ref|ZP_10380485.1| hypothetical protein SCD_00042 [Sulfuricella denitrificans skB26]
gi|393792865|dbj|GAB70124.1| hypothetical protein SCD_00042 [Sulfuricella denitrificans skB26]
Length = 862
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 185/592 (31%), Positives = 277/592 (46%), Gaps = 91/592 (15%)
Query: 617 AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIND 676
AA++ KS+F+A VSHEIRTPMNG+LGM +L+DT L Q DYA+T S + L+++IND
Sbjct: 221 AANI-KSEFVANVSHEIRTPMNGILGMAALLLDTRLTPEQRDYAETVRTSAESLLAIIND 279
Query: 677 VLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPG 736
+LD +KIE+G+LE E F L +++ V L + +A K +EL + + G G
Sbjct: 280 ILDFSKIEAGKLEMETEDFDLREIVAEVAELLAGQAQCKDLELLYDIPPGHEFRLRGAAG 339
Query: 737 RFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYN 796
R RQI+TNL N++KFT D G + + V + K +
Sbjct: 340 RLRQILTNLTANAVKFT-DAGEVLLKV-----------------------IPEKEEAGVV 375
Query: 797 TLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856
TL F V+D TG+GI E R+F F Q
Sbjct: 376 TLR-FEVID-------------------------------TGIGISEEGHQRLFQSFSQG 403
Query: 857 DSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQ 916
D S +R +GGTG+GL IS+ L +MGGEIG S PG GS+F F + S+ +
Sbjct: 404 DGSATRKHGGTGLGLVISKQLTVMMGGEIGVDSSPGQGSSFWFRLHLGRQPGRSVPVE-- 461
Query: 917 QYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVL 976
PD+S GLR L+ + + + L+ ++ V + + A L +
Sbjct: 462 ---PDIS-LHGLRVLIASGNANCRTILEHQLEFWQVPCAVVTNGEEALIQLHAAQDEETM 517
Query: 977 PQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKS 1036
LV++D + D I L ++K + P++ LLA + ++EL +
Sbjct: 518 --FNLVILDSTLPDHSI-TTLSRLIKNDAGQAS-------PRLVLLAPVTLRSHQEELIA 567
Query: 1037 DGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRV 1096
GI +LTKP+R++ L + + + +IL+V+DN+VNR+V
Sbjct: 568 AGIDVMLTKPVRMNKLAAVLAGAEQPVRDRHTDSTLRPAAKISPAARILIVEDNLVNRKV 627
Query: 1097 AEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEIN 1156
L K GR A++ L +D MD QMPE+DGF+AT IR E +
Sbjct: 628 VLYMLNKLALQAESASNGREALEALAKS-CYDLVLMDCQMPELDGFEATAAIRRREKAAH 686
Query: 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
+ VPI+ +TA+ + E+C+ GMDDY+ KP E
Sbjct: 687 AK-----------------RVPIIGITANAMHGDREKCLAAGMDDYLIKPLE 721
>gi|418790674|ref|ZP_13346446.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418795146|ref|ZP_13350855.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418797262|ref|ZP_13352948.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392757504|gb|EJA14391.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392759288|gb|EJA16141.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392768701|gb|EJA25447.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
Length = 918
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|85860923|ref|YP_463125.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
gi|85724014|gb|ABC78957.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
Length = 683
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 198/618 (32%), Positives = 304/618 (49%), Gaps = 112/618 (18%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS FLA++SHEIRTPM+ +LGM ++L++T L Q Y + N+G++L+++IND+LD
Sbjct: 152 AKSDFLASMSHEIRTPMHAILGMAELLLETPLSPEQQRYVEIFRNAGENLLNIINDILDI 211
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+K+E+G LE E + F L ++++ + + +A+ KG+ELA ++ VP +IGDP R +Q
Sbjct: 212 SKVEAGHLELENIEFDLGEIIERTVEALAIRAHGKGLELACHILPDVPVNLIGDPVRLQQ 271
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
I+ NLVGN+IKFT+ KG + V V EKS L+G
Sbjct: 272 ILINLVGNAIKFTE-KGEVVVHV-----------------EKS------------TELTG 301
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
P T T E+ G+++LL ++ DTG+GIP E ++F F QADSST
Sbjct: 302 GP---------------ETGT-EEGGKVELLFSIADTGIGIPQEKIDKMFEKFTQADSST 345
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT---EGERNSLDPKWQQ 917
+R +GGTG+GLSISR LVE+MGG I SE G G+T +FT F+ EG+ K +
Sbjct: 346 TRKHGGTGLGLSISRRLVEMMGGHIRLDSEVGKGTTATFTARFSVQAEGK------KLAE 399
Query: 918 YV-PDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVL 976
V V + GLR +IDD + + R L S +CS +D ++
Sbjct: 400 IVEAGVEKLTGLRTFIIDDNATNRMILREIL-----------SGWGSCSDEADGGERGIV 448
Query: 977 PQLALVLIDKDVWDKEIG-----LVLHYMLKQQRRKGGLE-ISRN-----LPKIFLLATS 1025
K +E G L+L Y + G E I RN +P I +L +
Sbjct: 449 ---------KMQKAREAGKPYDLLLLDYQMPGLDGFGVAERIQRNPSLAGIP-IVMLTSD 498
Query: 1026 ISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKG 1081
+ D + GI + LTKP++ + ++ + + +K + H +
Sbjct: 499 LGRGDPRRFRELGIASFLTKPVKRAELKNAILTTISKTKVAGRKPAPQAPAAPESH--RP 556
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
IL+ +D+ NR + LK + + G A+DK +D FMD+QMPEMDG
Sbjct: 557 LSILLAEDSEDNRLLLMSYLKSRPYRIDIAENGVIALDKFKTGR-YDLVFMDIQMPEMDG 615
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ AT +IR E E L PI+A+TA + + + G +
Sbjct: 616 YTATREIRKWEREHQ-----------------LRETPIVALTAYAYKEDRRKSLDAGCNG 658
Query: 1202 YVSKPFEDEQLYTAVARF 1219
++ KP + L A++ +
Sbjct: 659 HLVKPIKKAVLLEAISEY 676
>gi|312171320|emb|CBX79579.1| K07678 two-component system, NarL family, sensor histidine kinase
BarA [Erwinia amylovora ATCC BAA-2158]
Length = 924
Score = 260 bits (664), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 198/630 (31%), Positives = 307/630 (48%), Gaps = 124/630 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L++ Q
Sbjct: 284 LEQMEIQNVELDMAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTTLNSTQR 343
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY T S +L+S+INDVLD +K+E+G+L E +PF L LD V+ L + A++KG+
Sbjct: 344 DYLHTIERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGL 403
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ IGDP R +QII NL+GN+IKFT+ G+I D+R
Sbjct: 404 ELTLNIQSDVPDNAIGDPLRMQQIIVNLLGNAIKFTE-SGNI--------DIR------- 447
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+EK ++ N +M +L V + DT
Sbjct: 448 --VEK-------------------------RALSNNRM-------------ELEVQIHDT 467
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI + Q ++F F QAD+S SR +GGTG+GL I++ LV MGGEI F S GSTF
Sbjct: 468 GIGISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTF 527
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + + DP+ + D E + L + + + +A + +
Sbjct: 528 WFHINLALNPNAASDPR----IMDCVEGQHLAYVEPNAAAAKA------------VMEML 571
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI-SRNL 1016
N+ + SY +S L +LA +D +D L++ + Q R LEI + L
Sbjct: 572 NATPMRVSY------SSSLDELA-----QDRYDV---LLMGLPVAQGHR---LEIDEQQL 614
Query: 1017 PKIFLLATSI-------SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQK 1069
I A S+ + ++LK+ G+ L KPL ++ L+ D + +Q
Sbjct: 615 TPILQRANSVIMALPFQMQIYAEDLKARGVTACLIKPLSMTRLLPVL-VDHHYRRDMQ-- 671
Query: 1070 RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
P L +++ VDDN N ++ L++ A + D G AA+ + H D
Sbjct: 672 ---PQAERTLLPLRVMAVDDNPANLKLIGALLEEQVADIVLCDSGEAAIGQARLQH-LDI 727
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMPE+DG +A+ IR L IN PI+A+TA +
Sbjct: 728 ILMDIQMPEIDGIRASELIRQLPQHIN--------------------TPIVAVTAHAMDG 767
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+Q MK GM+DY++KP ++++L +AR+
Sbjct: 768 ERQQLMKAGMNDYLAKPIDEQKLSRLLARY 797
>gi|437848493|ref|ZP_20847168.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
gi|435338708|gb|ELP07890.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
Length = 684
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 35 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 94
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 95 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 154
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 155 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 196
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 197 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 218
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 219 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 278
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 279 WFHIHL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 318
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 319 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 370
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 371 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 425
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 426 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 484
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 485 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 524
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 525 LLSAGMNDYLAKPIEEEKLHNLLLRY 550
>gi|161501988|ref|YP_001569100.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160863335|gb|ABX19958.1| hypothetical protein SARI_00004 [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-]
Length = 918
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDASKIAMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|365835928|ref|ZP_09377336.1| signal transduction histidine-protein kinase BarA [Hafnia alvei ATCC
51873]
gi|364565048|gb|EHM42785.1| signal transduction histidine-protein kinase BarA [Hafnia alvei ATCC
51873]
Length = 913
Score = 259 bits (663), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 194/612 (31%), Positives = 302/612 (49%), Gaps = 111/612 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T L+A Q DY QT S +L+
Sbjct: 278 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTPLNATQSDYLQTIERSANNLL 337
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++INDVLD +K+E+G+L E +PF L + +D V L + A++KGIEL + + + VPE V
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFLLRETVDEVTVLLAPSAHEKGIELTLNIRNDVPEHV 397
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDP R +Q++TNL+GN+IKFT+ KG+I + V L +V++ +VL
Sbjct: 398 IGDPMRIQQVLTNLLGNAIKFTE-KGNIDIRVELRSATPHQVEL--EVL----------- 443
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
V++T G + +R +S ++F
Sbjct: 444 --VHDT--GIGISERQQS--------------------------------------QLFQ 461
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF F + E N
Sbjct: 462 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNKGSTFWFHIQL---ELNHN 518
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
P Q + P + G + L I+ + A+ T LQ A ++++ S
Sbjct: 519 AP--QNHFP-MQRLAGQKLLYIESNPVAAQCTLDLLQ--------ATPLEVSYS------ 561
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP-KIFLLATSISETD 1030
P LA V+ D +GL +++ + + L + +L ++ L S + D
Sbjct: 562 -----PLLAQVIPDSHYDILLVGLPVNFTSHDSQGEEKLRTALSLADRVILAMPSHTLLD 616
Query: 1031 RDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK--GKQILVVD 1088
DELK GI + L+KPL + L+ ++ KR + H ++ ++ VD
Sbjct: 617 SDELKMRGIRSCLSKPLTSNRLLPILLDNSLP------KRAPVVIEHNVERLPLSVMAVD 670
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQI 1148
DN N ++ L + + G A+ K H D MD+QMPEMDG + + I
Sbjct: 671 DNPANLKLIGALLGELVEQTILCNSGEEAIAK-AKEHRLDIILMDIQMPEMDGIRTSELI 729
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
R L I+ PI+A+TA I E+ ++ GMDDY++KP +
Sbjct: 730 RKLPRYID--------------------TPIIAVTAHAINGERERLLRAGMDDYLAKPID 769
Query: 1209 DEQLYTAVARFF 1220
+ L +AR++
Sbjct: 770 ENMLRQLLARYY 781
>gi|445495785|ref|ZP_21462829.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
gi|444791946|gb|ELX13493.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
Length = 952
Score = 259 bits (663), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 199/627 (31%), Positives = 291/627 (46%), Gaps = 126/627 (20%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS FLAT+SHEIRTPMNGVLGM ++L+ T L Q Y SG+ L+ +IND+LD
Sbjct: 278 AKSAFLATMSHEIRTPMNGVLGMTELLLATRLSEQQRHYTSMVKRSGEHLLVIINDILDF 337
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIE+G+L E++ F+ ++LD++ ++FS +A KGI L + ++ +P + GDP R RQ
Sbjct: 338 SKIEAGKLTVEYIHFNFRELLDDIDNVFSPQAQAKGIRLELAIAYDIPIAICGDPNRLRQ 397
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
+I NL+GN+IKFT D G K+ VK V+ + +V
Sbjct: 398 VIFNLLGNAIKFT-DSG--------------KITVKVAVVHEDAQTV------------- 429
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
L V DTG+G+ EA+ RIF F QAD ST
Sbjct: 430 ----------------------------GLRFEVHDTGIGVSSEARARIFDSFSQADGST 461
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
+R +GGTG+GL+IS+ LVELMGG IG GS F F V F + + DP +
Sbjct: 462 TRKHGGTGLGLAISKQLVELMGGTIGVDHALTQGSIFWFAVNFDKRRIDVDDPSFHAT-- 519
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLA 980
+ RAL++D+ +R L++L + S +T LPQL
Sbjct: 520 -----QECRALIVDENP----ASRSELEQL---------LASWRIASSSASATDALPQLR 561
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS---RNLPKIFLLATSISETDRD----- 1032
+D ++L L R GL ++ R P + + T+R+
Sbjct: 562 QAAARGHPYD---AVLLDMELP---RTSGLALAAAIRAEPALAASRLLLLSTERNAADGV 615
Query: 1033 ELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK------------------PS 1074
+ ++ G+ L KP R L C S+ + + PS
Sbjct: 616 QRRAAGVAFQLIKPPRACDLFDCLLAPGRSTPPAARAAETPPPAAAPAAPPLAALSPGPS 675
Query: 1075 LG-HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
K +++L+ +DN VN VA L+ G V+ G A+ + FD MD
Sbjct: 676 PAPRARKRRKVLLAEDNPVNVEVASAMLEGLGLEVSRACNGEEALHSVQ-AGEFDLILMD 734
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
QMP MDGF AT +IR E + G + ++PI+A+TA+ +Q E
Sbjct: 735 CQMPVMDGFAATTEIRRHE------LQRGRAR----------NLPIIAITANALQGDRES 778
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARFF 1220
C+ GMDDY+SKPF + L +AR+
Sbjct: 779 CLAAGMDDYLSKPFTQQALGQTIARWI 805
>gi|378763933|ref|YP_005192549.1| putative two-component hybrid sensor and regulator [Sinorhizobium
fredii HH103]
gi|365183561|emb|CCF00410.1| putative two-component hybrid sensor and regulator [Sinorhizobium
fredii HH103]
Length = 989
Score = 259 bits (663), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 198/630 (31%), Positives = 293/630 (46%), Gaps = 104/630 (16%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
R Q+ E+ + AE A +AKS+FLA +SHEIRTPMNGV+G+ ++L TEL Q
Sbjct: 321 RTEQLRKSREELERARDVAEQASIAKSEFLANMSHEIRTPMNGVIGIAELLEGTELSEQQ 380
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
Y +S + L+ LIND+LD +KIE+GRLE E +PF L D L + L + +A KG
Sbjct: 381 RRYVSIILHSAETLMDLINDILDFSKIEAGRLELETIPFMLRDTLGDTLQTLAKRAADKG 440
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD----VRSK 772
+ELA ++ VP+ ++GDP R RQII NLVGN+IKFT++ G + V V L + R +
Sbjct: 441 LELACHIPPEVPDHLMGDPTRLRQIIVNLVGNAIKFTEN-GEVVVDVTLVGEGDQGARLQ 499
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
DV+D T G P + + +E F D + T
Sbjct: 500 FDVRD-------------------TGIGIPAAQQERIFEAFAQADTSTT----------- 529
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
R YGGTG+GL+I+ L E MGG + S+PG
Sbjct: 530 -----------------------------RQYGGTGLGLAIAAQLAEKMGGPMQLDSKPG 560
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
GS F+F F L P+ Q+ P +E RG R LV+DD + ++ +
Sbjct: 561 VGSVFTFAADFV------LAPEAQKARPVREAELRGRRVLVVDDNATNRQILEEIVVNWG 614
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
M VA A + L S+ LP LAL+ + + + G L + R + L+
Sbjct: 615 MIPIVAVDGAAALNALEQ--SSGALPDLALLDV---MMPRMSGFELAACM---RLRPALK 666
Query: 1012 ISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+R I +++++ +D L+ + LL KP++ S L+ S + +
Sbjct: 667 ETR----IVMMSSAGRPSDEALLRKLDVSRLLVKPVKQSDLLNAITNALGFSMREDEVEG 722
Query: 1072 KPSLGHLLK--GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
S L G +L+ +D VNR+VA L K G V V G+ AV+ ++D
Sbjct: 723 SASPARLRTGLGLTVLLAEDGAVNRQVAVDLLTKRGHRVEAVGNGQEAVEA-AEHGSYDL 781
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+ MP MDG AT ++ +PI+A+TA A
Sbjct: 782 VLMDVHMPVMDGLAAT------------------AAIRALARAECARLPIIALTASATPA 823
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+C+ GMD YV+KPF +L+ V ++
Sbjct: 824 DRERCLAAGMDGYVTKPFRASELFRVVEQY 853
>gi|56414910|ref|YP_151985.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|168242719|ref|ZP_02667651.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194451603|ref|YP_002046927.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197363838|ref|YP_002143475.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|386592651|ref|YP_006089051.1| BarA sensory histidine kinase (VarS, GacS) [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|419732031|ref|ZP_14258939.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419735655|ref|ZP_14262528.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419736957|ref|ZP_14263781.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419741819|ref|ZP_14268497.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419750490|ref|ZP_14276947.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|421573241|ref|ZP_16018881.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421580314|ref|ZP_16025872.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421583158|ref|ZP_16028682.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|56129167|gb|AAV78673.1| sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi
A str. ATCC 9150]
gi|194409907|gb|ACF70126.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|197095315|emb|CAR60872.1| sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi
A str. AKU_12601]
gi|205338112|gb|EDZ24876.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|381290662|gb|EIC31926.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381293979|gb|EIC35119.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381306415|gb|EIC47289.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|381306996|gb|EIC47862.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381315186|gb|EIC55949.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|383799692|gb|AFH46774.1| BarA sensory histidine kinase (VarS, GacS) [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|402520070|gb|EJW27424.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402528726|gb|EJW35976.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402532084|gb|EJW39281.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
Length = 918
Score = 259 bits (663), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT + P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|406836798|ref|ZP_11096392.1| PAS domain S-box [Schlesneria paludicola DSM 18645]
Length = 800
Score = 259 bits (663), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 191/610 (31%), Positives = 290/610 (47%), Gaps = 106/610 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE+A+ AKS FLA +SHEIRTPMN V+GM +++DTEL+ Q Y + +S + L+
Sbjct: 281 KEAAESANRAKSAFLANMSHEIRTPMNAVIGMTDLVLDTELNDLQDSYLKIVKDSAESLL 340
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
LIND+LD +KIE+ +LE + PF L D+L + + + + +ELA +V+ VPE +
Sbjct: 341 RLINDILDFSKIEADKLELDQTPFSLRDLLGDAIKTLALQVQGDELELACHVTPDVPEYL 400
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV----HLADDVRSKVDVKDKVLEKSLNSV 787
GDP R RQ++TNL+ N++KFT+ +G I + V +A DVR V+D +
Sbjct: 401 TGDPYRLRQVVTNLIANAVKFTE-RGEIVLQVSRESQIAGDVRLHFSVRD-------TGI 452
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
+DK + + F VD
Sbjct: 453 GIPADKQHLLFNAFSQVD------------------------------------------ 470
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
SST+R YGGTG+GL+I+ LV LM GE+ SE G GSTF FT F
Sbjct: 471 ----------SSTTRRYGGTGLGLAITARLVRLMDGEVWVESESGRGSTFHFTARFALAT 520
Query: 908 --RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
+ + +P ++ + LR L++DD + + + L M +S A
Sbjct: 521 VPKPAFEP--------LASLKDLRVLIVDDNATNRLILQEILNSWAMRPTAVDSAPAALQ 572
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
LS + + LVL D + D + G L ++Q RR + I +L++
Sbjct: 573 ELSRSIQAN--EPYDLVLSDVHMPDVD-GFELASTIRQDRRF-------HSTVIMMLSSG 622
Query: 1026 ISETDRDELKSDGIVTLLTKPLRLSVL-IGCFQEDPESSKKLQQKRKKPSLGHLLKGKQI 1084
S D + G L KP++ S L + ++K+ Q+ K + +I
Sbjct: 623 ASSGDAARCRELGAAAHLMKPIKQSDLHLTIATTLGNAAKRAAQQSTK--IDSTCPPLRI 680
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+ +D N+ +A G LKK G VT + G+ A++ FD MD+QMPE+DGFQA
Sbjct: 681 LLAEDGYANQTLAVGVLKKWGHTVTIANNGQEAIEAWE-REPFDVILMDVQMPEIDGFQA 739
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T IR E + H+PI+AMTA+ ++ E+C+ GMD+Y++
Sbjct: 740 TIAIRAKEQGADR------------------HIPIIAMTANAMKGDREECLAAGMDEYIA 781
Query: 1205 KPFEDEQLYT 1214
KP +L T
Sbjct: 782 KPIRWPELQT 791
>gi|350553288|ref|ZP_08922468.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349791163|gb|EGZ45053.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1153
Score = 259 bits (663), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 191/628 (30%), Positives = 307/628 (48%), Gaps = 98/628 (15%)
Query: 595 INRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA 654
+ R A +E + +++ K A+ A+ AKS FLA +SHEIRTPMN V+G+ ++L++TEL
Sbjct: 383 LARQALLEQE-QKLLHAKEEADQANRAKSDFLANMSHEIRTPMNAVIGLSELLLNTELSP 441
Query: 655 AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQ 714
Q DY Q H S + L+ +IND+LD +KIE+ +LE + PF L ++LD + +LFS+ A++
Sbjct: 442 HQRDYLQKIHRSSRMLLGIINDILDYSKIEADKLELDLHPFSLDELLDQMTTLFSNAADE 501
Query: 715 KGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVD 774
KG+EL + VP+ ++GD R Q++ NL+GN++KFT SV L D+R
Sbjct: 502 KGLELIFHAHPEVPQRLVGDSLRLGQVLINLLGNALKFTAQG-----SVEL--DIR---- 550
Query: 775 VKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
+Q + L GF V D
Sbjct: 551 -----------PLQCHGEAA---LLGFQVKD----------------------------- 567
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+G+G+ ++F PF QAD+ST+R YGGTG+GL ISR LVE MGG + S+P G
Sbjct: 568 --SGIGMTEAQLAKLFQPFSQADTSTTRKYGGTGLGLVISRKLVEKMGGTLEIASQPQIG 625
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
+T F + + + + V G RALV+DD +I V R L+ ++ V
Sbjct: 626 TTVRFNLHLPLAQAAASSTTGAAPITQV----GTRALVVDDHAIARAVLRELLEHHQLEV 681
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
S + A L + V +D + D G+ ++ + + +G L+
Sbjct: 682 EEVASGEAAIQAL--IVADKQQRPFDFVFLDWKMPDGLDGMEASRIIDRMKHQGILQ--- 736
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ--EDPESSKKLQQKRKK 1072
P I ++ ++ ++ DG L+KP+ S L+G + ++ + + + +
Sbjct: 737 -HPVIVVIVSAYGIKKKE--ADDGYAAFLSKPVTASSLLGVMTHLQYGVTAAQTEGQPQI 793
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
P H +L+V+DN +N+ VA L+K GA + + G A++ + D M
Sbjct: 794 PQFAH----SSVLLVEDNAINQEVALRTLEKTGATIWVANHGAQALEMVLHKQP-DLILM 848
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
DLQMP MDGF+AT QI+ EI PI+A++A V+ A
Sbjct: 849 DLQMPIMDGFEATEQIKSHYPEI----------------------PIIALSAAVMPADKV 886
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ + GM +++KP + E+LY +A +
Sbjct: 887 RSQQAGMAGHLAKPLDREELYRTLAHWL 914
>gi|288941100|ref|YP_003443340.1| signal transduction histidine kinase with CheB and CheR activity
[Allochromatium vinosum DSM 180]
gi|288896472|gb|ADC62308.1| signal transduction histidine kinase with CheB and CheR activity
[Allochromatium vinosum DSM 180]
Length = 1994
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 204/641 (31%), Positives = 302/641 (47%), Gaps = 105/641 (16%)
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
L+G +H I + QVE + E + +A A+++AKS FLA +SHEIRTPMN VLG
Sbjct: 1209 LIG--YHIDITALKQVE---QALSEARDQANASNLAKSAFLANMSHEIRTPMNAVLGFCY 1263
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
+L LD D + H +G+ L+ LIND+LD +KIE+G LE E PF L ++LD +
Sbjct: 1264 LLEQRALDPTSADLVRKIHGAGQALLGLINDILDFSKIEAGHLEIESTPFQLSELLDTLA 1323
Query: 706 SLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
+ ++ A K +EL + E +IGD GR +Q++ NL+GN+IKFT
Sbjct: 1324 GIMTAAAGDKPLELVLTPPGEGIEGLIGDAGRLQQVLINLLGNAIKFT------------ 1371
Query: 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQL 825
R +V+++ + V D
Sbjct: 1372 ---ARGEVELR-------VEQVAEHGD--------------------------------- 1388
Query: 826 GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
R+ L TV DTG+GI E Q IF F QAD+S R +GGTG+GL+IS+ LV +MGG +
Sbjct: 1389 -RLDLRFTVRDTGIGIAPEHQTNIFNAFSQADNSIGRRFGGTGLGLAISQRLVHMMGGRL 1447
Query: 886 GFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRY 945
S G GS F FT+ + + N+ DP +E LR LV++D +
Sbjct: 1448 ELESTLGQGSAFYFTLAL-QRDPNAPDP--------AAELGRLRLLVVEDCATAGAALVQ 1498
Query: 946 HLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVW--DKEIGLVLHYMLKQ 1003
+ L V +A+S A +L+ + P A VLID W E GL L+
Sbjct: 1499 TARALGWRVDLADSSAAAQEHLAARLALPT-PYDA-VLID---WRMPGEDGLSCARALRA 1553
Query: 1004 QRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPES 1062
K GL S P + L+ ++ S + ++ +L KP+ S L +
Sbjct: 1554 AVAKKGLAGS---PALMLMTSAQSRPALEAQPEIAMIDAILDKPVTPSSLYNALASLRGA 1610
Query: 1063 SKKLQQKRKKPSLGHL---LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD 1119
++ + S+G L G ++L+VDD+ +N+ VA G L HGA V+ D G AA+
Sbjct: 1611 RRRYANTNRLLSVGRRSRQLAGLRVLMVDDSEINQEVASGILVGHGAQVSVADDGEAALA 1670
Query: 1120 KLTP-PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
L P D MD+QMP +DG+ AT ++R N +P
Sbjct: 1671 WLDAHPDAVDIVLMDVQMPRLDGYAATRRLRLDRRWRN--------------------LP 1710
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
++A+TA Q+ E GM+D+V+KPF QL + R+
Sbjct: 1711 VIALTAGAFQSMQEAARAAGMNDFVAKPFNVAQLIACIQRW 1751
>gi|317491023|ref|ZP_07949459.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920570|gb|EFV41893.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 913
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 195/614 (31%), Positives = 302/614 (49%), Gaps = 111/614 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T L+A Q DY QT S +L+
Sbjct: 278 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTPLNATQSDYLQTIERSANNLL 337
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++INDVLD +K+E+G+L E +PF L + +D V L + A++KGIEL + + + VPE V
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFLLRETIDEVTVLLAPSAHEKGIELTLNIRNDVPEHV 397
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDP R +Q++TNL+GN+IKFT+ KG+I + V L +V++ +VL
Sbjct: 398 IGDPMRIQQVLTNLLGNAIKFTE-KGNIDIRVELRSATPHQVEL--EVL----------- 443
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
V++T G + +R +S ++F
Sbjct: 444 --VHDT--GIGISERQQS--------------------------------------QLFQ 461
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF F + E N
Sbjct: 462 AFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNKGSTFWFHIQL---ELNHN 518
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
P Q + P + G + L I+ + A+ T LQ A ++++ S
Sbjct: 519 AP--QSHFP-MQRLAGQKLLYIESNPVAAQCTLDLLQ--------ATPLEVSYS------ 561
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP-KIFLLATSISETD 1030
P LA V+ D +GL +++ + + L + +L ++ L S + D
Sbjct: 562 -----PLLAQVIPDSHYDILLVGLPVNFTSHDSQGEEKLRKALSLADRVILAMPSHTLLD 616
Query: 1031 RDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK--GKQILVVD 1088
DELK GI + L+KPL + L+ ++ KR + H + ++ VD
Sbjct: 617 SDELKMRGIRSCLSKPLTSNRLLPILLDNSLP------KRAPVVIDHNAERLPLSVMAVD 670
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQI 1148
DN N ++ L + + G A+ K H D MD+QMPEMDG + + I
Sbjct: 671 DNPANLKLIGALLGELVEQTILCNSGEEAIAK-AKEHRLDIILMDIQMPEMDGIRTSELI 729
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
R L I+ PI+A+TA I E+ ++ GMDDY++KP +
Sbjct: 730 RKLPRYID--------------------TPIIAVTAHAINGERERLLRAGMDDYLAKPID 769
Query: 1209 DEQLYTAVARFFMS 1222
+ L +AR++ S
Sbjct: 770 ENMLRQLLARYYRS 783
>gi|67922645|ref|ZP_00516150.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Crocosphaera watsonii WH 8501]
gi|67855493|gb|EAM50747.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Crocosphaera watsonii WH 8501]
Length = 731
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 201/625 (32%), Positives = 309/625 (49%), Gaps = 101/625 (16%)
Query: 606 HEMMELKARAEAAD---VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQT 662
E+ E KA +A + +AKS+FL+ + HEIRTP+N V GM +L+DTEL Q ++
Sbjct: 60 EEIAEQKASEKALEELNLAKSEFLSMMGHEIRTPLNAVTGMTGLLLDTELSDQQKEFVNI 119
Query: 663 AHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIY 722
NSG++L+++IN++LD +KIE+ +LE E PF L ++ VL LF S+A+QK +ELA
Sbjct: 120 IRNSGENLLTMINNILDFSKIEANKLELEEAPFELGLCIEEVLRLFVSQASQKKLELAYL 179
Query: 723 VSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEK 782
+ P ++GD R +QI+ NL+GN++KFT + G + + V V+E
Sbjct: 180 LEPNTPSGIVGDSTRLKQILANLIGNAVKFTPE-GEVVIYVS------------STVIEG 226
Query: 783 SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIP 842
V N N +L V+DTG+GIP
Sbjct: 227 GEGEV------------------------------NPN-------YELRFAVKDTGIGIP 249
Query: 843 LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902
E R+F PF Q D+ST+R YGGTG+GL IS+ L ELMGG++ SE G GSTF+FT+
Sbjct: 250 KERCHRLFQPFSQVDASTTRQYGGTGLGLVISKRLSELMGGKMWVHSEEGKGSTFNFTLR 309
Query: 903 FTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
+S P Q SE G R L+IDD ++ Q M +S +
Sbjct: 310 AKAATSSS--PVTSQ--EGESELMGKRVLIIDDNLTSQKILINQAQSWGMFTCAVDSGEK 365
Query: 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
A +L + V ++D ++ D GL L +++Q LP I L
Sbjct: 366 ALEWLKRGITFDV------AILDMNLPDMN-GLELVREIRKQPN------CTRLPLIML- 411
Query: 1023 ATSISETDRD-ELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGH 1077
++I+ET++ + + V +L KP++ S VL+ F E P + ++ Q +
Sbjct: 412 -SAITETEKTFQSSEEEFVAVLCKPVQRSQLYNVLMEIFSEIPRAPIRVTQSQSVQCSEK 470
Query: 1078 LLKGK----QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L G+ +ILV +D +VN++V L+K G V G+ ++ L +D MD
Sbjct: 471 SLMGQTHPLKILVAEDVVVNQQVIHLLLEKLGYCADIVSDGQEVLEALK-NFAYDVVLMD 529
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
++MPEMDG AT + I + A + I+AMTA+ ++ E+
Sbjct: 530 IRMPEMDGLTAT-------DHICQNYAPDKRPR------------IIAMTAESMEGDRER 570
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ GMDDY+ KP ++L A++R
Sbjct: 571 FIAGGMDDYICKPVRIKELQEALSR 595
>gi|427800133|ref|ZP_18967937.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
gi|414063705|gb|EKT44802.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
Length = 810
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|200387412|ref|ZP_03214024.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199604510|gb|EDZ03055.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 918
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|397166912|ref|ZP_10490355.1| signal transduction histidine-protein kinase BarA [Enterobacter
radicincitans DSM 16656]
gi|396091058|gb|EJI88625.1| signal transduction histidine-protein kinase BarA [Enterobacter
radicincitans DSM 16656]
Length = 921
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 189/623 (30%), Positives = 300/623 (48%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + +EL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V+ L + A+ KG+
Sbjct: 329 DHLLTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVILLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNL+GN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLIGNAIKFTE-HGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
V+EK ++ N K +++ V + DT
Sbjct: 431 VVVEK-------------------------RAISNNK-------------VQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ + A+ T + V
Sbjct: 513 WFHIDL------DLNPNAITEAPTTERLAGKRLAYVEPNAAAAQST----------LEVL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
N+ L Y + S S LPQ D+ + + + L Q + L + +
Sbjct: 557 NNTPLEIIY---SPSFSALPQ-----GHYDILLLAVPVTVREPLSMQHDR--LARAAAMT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
LLA ++ + +ELK DG L KPL + L+ E +++ + S
Sbjct: 607 DYLLLALPCHAQVNAEELKQDGAAACLLKPLTTTRLLPALTEYCRTTQLVLASHADESKL 666
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
+ ++ VDDN N ++ L+ V + G A+++ FD MD+QM
Sbjct: 667 PM----SVMAVDDNPANLKLIGVLLEDQVQHVELCENGLQAIER-AKQMQFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A IR L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIRQLPHQ--------------------QQTPVVAVTAHAMAGQKEKLLS 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM+DY++KP E+++L+ + R+
Sbjct: 762 AGMNDYLAKPIEEDKLHNLLLRY 784
>gi|168236004|ref|ZP_02661062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194737545|ref|YP_002115910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|416425307|ref|ZP_11692281.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416428914|ref|ZP_11694127.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416438966|ref|ZP_11699843.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416446200|ref|ZP_11704955.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416451592|ref|ZP_11708342.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416459829|ref|ZP_11714274.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416471831|ref|ZP_11719362.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416482580|ref|ZP_11723796.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416493065|ref|ZP_11727852.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416498528|ref|ZP_11730321.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416504199|ref|ZP_11733146.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416515518|ref|ZP_11738645.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416527309|ref|ZP_11743147.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416533755|ref|ZP_11746573.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416546922|ref|ZP_11754316.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416549488|ref|ZP_11755331.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416559639|ref|ZP_11760828.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416577851|ref|ZP_11770137.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416586919|ref|ZP_11775751.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416591793|ref|ZP_11778737.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416598159|ref|ZP_11782546.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416606673|ref|ZP_11787914.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416613850|ref|ZP_11792298.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416620160|ref|ZP_11795518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416634649|ref|ZP_11802629.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416636842|ref|ZP_11803266.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416647256|ref|ZP_11808255.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416657149|ref|ZP_11813605.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416670113|ref|ZP_11819827.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416674964|ref|ZP_11821287.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416693417|ref|ZP_11826736.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416706147|ref|ZP_11831406.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416712174|ref|ZP_11835885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416718370|ref|ZP_11840478.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416723275|ref|ZP_11844040.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416733263|ref|ZP_11850354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416740317|ref|ZP_11854364.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416746098|ref|ZP_11857676.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416753590|ref|ZP_11860909.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416761748|ref|ZP_11865799.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416766552|ref|ZP_11869196.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|418481964|ref|ZP_13050987.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418490423|ref|ZP_13056968.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418495948|ref|ZP_13062386.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418498765|ref|ZP_13065179.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418505463|ref|ZP_13071809.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418510033|ref|ZP_13076324.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418512301|ref|ZP_13078544.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418524726|ref|ZP_13090711.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|194713047|gb|ACF92268.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197290872|gb|EDY30226.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|322614233|gb|EFY11165.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620953|gb|EFY17811.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322624016|gb|EFY20850.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628245|gb|EFY25034.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322633364|gb|EFY30106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636059|gb|EFY32767.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322639395|gb|EFY36083.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322643743|gb|EFY40294.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322648855|gb|EFY45302.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655152|gb|EFY51462.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658017|gb|EFY54285.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664118|gb|EFY60317.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667087|gb|EFY63259.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673135|gb|EFY69242.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677874|gb|EFY73937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681048|gb|EFY77081.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322685645|gb|EFY81639.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194784|gb|EFZ79971.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323196535|gb|EFZ81683.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323205052|gb|EFZ90035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323212701|gb|EFZ97518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323214816|gb|EFZ99564.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323222545|gb|EGA06910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226425|gb|EGA10633.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323230696|gb|EGA14814.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234953|gb|EGA19039.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323238992|gb|EGA23042.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323244650|gb|EGA28656.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247266|gb|EGA31232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251798|gb|EGA35663.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323257485|gb|EGA41175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263270|gb|EGA46807.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267522|gb|EGA51006.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323272711|gb|EGA56117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|363556964|gb|EHL41177.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363558575|gb|EHL42766.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363563549|gb|EHL47616.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363567379|gb|EHL51377.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363569437|gb|EHL53387.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363575792|gb|EHL59641.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|366058464|gb|EHN22753.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366064697|gb|EHN28894.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366066064|gb|EHN30240.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366067770|gb|EHN31918.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366073517|gb|EHN37590.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366077633|gb|EHN41647.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366083808|gb|EHN47724.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366830699|gb|EHN57569.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372207585|gb|EHP21084.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
Length = 918
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|16766264|ref|NP_461879.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|161615886|ref|YP_001589851.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167550176|ref|ZP_02343933.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167993450|ref|ZP_02574544.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168231049|ref|ZP_02656107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168261898|ref|ZP_02683871.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168463891|ref|ZP_02697808.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168820322|ref|ZP_02832322.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194444640|ref|YP_002042209.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194471010|ref|ZP_03076994.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|204928346|ref|ZP_03219546.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|224584749|ref|YP_002638547.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238909738|ref|ZP_04653575.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|374978978|ref|ZP_09720317.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|375002705|ref|ZP_09727045.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|378446315|ref|YP_005233947.1| sensor protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378451715|ref|YP_005239075.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378700871|ref|YP_005182828.1| sensor protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378985551|ref|YP_005248707.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378990282|ref|YP_005253446.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379702216|ref|YP_005243944.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383497629|ref|YP_005398318.1| sensor protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|409246649|ref|YP_006887353.1| sensor-regulator, activates OmpR by phophorylation [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|416565819|ref|ZP_11763640.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|418761778|ref|ZP_13317916.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418766281|ref|ZP_13322360.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418771605|ref|ZP_13327612.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418773624|ref|ZP_13329597.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418778568|ref|ZP_13334478.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418783254|ref|ZP_13339101.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418801188|ref|ZP_13356825.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418806162|ref|ZP_13361734.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418810322|ref|ZP_13365862.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418817940|ref|ZP_13373419.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418823008|ref|ZP_13378417.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418824627|ref|ZP_13379977.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418830902|ref|ZP_13385860.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418837363|ref|ZP_13392238.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418842627|ref|ZP_13397437.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418843513|ref|ZP_13398310.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418848093|ref|ZP_13402833.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418857435|ref|ZP_13412062.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418862511|ref|ZP_13417050.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418869827|ref|ZP_13424260.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419787105|ref|ZP_14312820.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419793500|ref|ZP_14319123.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421884102|ref|ZP_16315320.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|422032209|ref|ZP_16378324.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427553841|ref|ZP_18928817.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427571395|ref|ZP_18933532.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427592103|ref|ZP_18938331.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427615479|ref|ZP_18943218.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427639533|ref|ZP_18948098.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427662506|ref|ZP_18957809.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427676028|ref|ZP_18962625.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|452123223|ref|YP_007473471.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|6996656|gb|AAF34823.1|AF171069_1 BarA sensor kinase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|16421509|gb|AAL21838.1| sensory histidine kinase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|161365250|gb|ABX69018.1| hypothetical protein SPAB_03679 [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|194403303|gb|ACF63525.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194457374|gb|EDX46213.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|195633256|gb|EDX51670.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|204322668|gb|EDZ07865.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205324815|gb|EDZ12654.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205328470|gb|EDZ15234.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205334634|gb|EDZ21398.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205342849|gb|EDZ29613.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205349206|gb|EDZ35837.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|224469276|gb|ACN47106.1| sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi
C strain RKS4594]
gi|261248094|emb|CBG25929.1| sensor protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267995094|gb|ACY89979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159519|emb|CBW19038.1| sensor protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312913980|dbj|BAJ37954.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087383|emb|CBY97148.1| sensor-regulator, activates OmpR by phophorylation [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321225638|gb|EFX50692.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323131315|gb|ADX18745.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332989829|gb|AEF08812.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|353077393|gb|EHB43153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|363579816|gb|EHL63588.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|379986337|emb|CCF87593.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|380464450|gb|AFD59853.1| sensor protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|392617479|gb|EIW99904.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392621048|gb|EIX03414.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392734133|gb|EIZ91324.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392738530|gb|EIZ95671.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392738999|gb|EIZ96139.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392752664|gb|EJA09604.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392755777|gb|EJA12686.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392757102|gb|EJA13992.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392780909|gb|EJA37560.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392781270|gb|EJA37911.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392782779|gb|EJA39409.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392785902|gb|EJA42459.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392786352|gb|EJA42908.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392799439|gb|EJA55698.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392800098|gb|EJA56336.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392807198|gb|EJA63282.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392816849|gb|EJA72771.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392820948|gb|EJA76782.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392824152|gb|EJA79943.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392833908|gb|EJA89518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392834909|gb|EJA90509.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392836290|gb|EJA91878.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|414016421|gb|EKT00194.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414016748|gb|EKT00508.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414029669|gb|EKT12826.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414031216|gb|EKT14291.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414034283|gb|EKT17215.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414044595|gb|EKT27037.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414049999|gb|EKT32188.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414057576|gb|EKT39330.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|451912227|gb|AGF84033.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 918
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|197264060|ref|ZP_03164134.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197242315|gb|EDY24935.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
Length = 918
Score = 259 bits (662), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|197249783|ref|YP_002147868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197213486|gb|ACH50883.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
Length = 918
Score = 259 bits (662), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|440792679|gb|ELR13887.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acanthamoeba castellanii str. Neff]
Length = 822
Score = 259 bits (662), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 200/629 (31%), Positives = 294/629 (46%), Gaps = 112/629 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EM+ A A A+ AK++F+A +SHEIRTPMNG++GM ++ +DT+L + Q DY + H+S
Sbjct: 236 EMLIKTALANEANRAKTEFMANMSHEIRTPMNGIIGMTELALDTQLSSEQRDYLKLVHSS 295
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+++IND+LD +KIE+G+L+ E + LH+ L + L + KA++KGIEL +
Sbjct: 296 ALGLLTIINDILDFSKIEAGKLDIEHIDMSLHETLGDTLKALALKAHEKGIELLSDIEPT 355
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL----ADDVRSKVDVKDKVLEK 782
+P+ ++GDP R RQ+I NLVGN+IKFT KG + +SV + AD V V+D
Sbjct: 356 LPDKLVGDPVRLRQVIINLVGNAIKFT-SKGEVVLSVQMQQRNADSVVLHFAVRD----- 409
Query: 783 SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIP 842
T G P +E F D
Sbjct: 410 --------------TGIGIPADKLSVIFEAFSQADG------------------------ 431
Query: 843 LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902
S +R YGGTG+GL+IS LV+LM G++ S P GS F FT T
Sbjct: 432 ----------------SITRKYGGTGLGLTISTRLVQLMQGKLTAESVPDKGSLFHFTAT 475
Query: 903 FTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
F G S K Q + R L++D + L +M + +++
Sbjct: 476 FGLGRDESPHQKQQTAI-----LSSRRVLLVDANITSRRILSQMLLHWQMEPVLVDTVHE 530
Query: 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
A ++ S+ VL+ + D GL + + + I++ I +L
Sbjct: 531 ATELFAE--SSLAQKPFEYVLLVSQIPDDLEGLTVAQFTENRI------ITKETMIILML 582
Query: 1023 ATSISETDRDELKSDG---IVTLLTKPLR----LSVLIGCFQEDP---ESSKKLQQKRKK 1072
+ + S+ RD L + L KP+ L L+ F+++P S+
Sbjct: 583 SPTTSK--RDILSQHSCPPMCAYLNKPVGQSELLYALLKPFEKEPIHMASTGSDTTAGGS 640
Query: 1073 PSLGHLLKGKQ-ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
P L K KQ IL+ +DN+VN+++A + G VT D GR AV+ H FD
Sbjct: 641 PLLTVQGKPKQKILLAEDNVVNQKLA----IRFGYAVTLADNGRKAVEA-ARGHRFDLIL 695
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMPEM GF+AT +IR LE G H PI+AMTA IQ
Sbjct: 696 MDVQMPEMGGFEATAKIRELEKR-----------------QGKGHTPIVAMTAHAIQGYR 738
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E+C++ GMD Y+SKP E L + F
Sbjct: 739 EKCLEGGMDGYISKPIHAESLKQTIESFL 767
>gi|437153270|ref|ZP_20690376.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435141021|gb|ELN27963.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
Length = 918
Score = 259 bits (662), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 195/626 (31%), Positives = 297/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 513 WFHIHL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSISE-TDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA E + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHEQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|421383353|ref|ZP_15833391.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|395995587|gb|EJI04651.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
Length = 918
Score = 259 bits (662), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 513 WFHIHL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
thermophila UNI-1]
gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
thermophila UNI-1]
Length = 1819
Score = 259 bits (662), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 197/652 (30%), Positives = 311/652 (47%), Gaps = 125/652 (19%)
Query: 586 LVGHIFHAAINR---IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLG 642
L+ A I R + Q++ E+ + +A A KS+FLAT+SHEIRTP+N V+G
Sbjct: 1113 LMAQWIGAEIERDRYLKQLQRISDELALARDQALEASRLKSEFLATMSHEIRTPLNAVIG 1172
Query: 643 MLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLD 702
M ++L+DT L+ Q D+A+ +SGK L+S+IND+LD +KIE+GR+ E V F L ++D
Sbjct: 1173 MSEILLDTPLNEEQADFARIIRDSGKSLLSIINDILDFSKIEAGRMTLESVEFQLLPLVD 1232
Query: 703 NVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVS 762
+V+ +F+S +K + L +++ VP +V+GDP R RQ++ NLVGN +KFT ++GH+ VS
Sbjct: 1233 SVIEMFASIVQKKNLHLFGWIAPDVPNIVVGDPVRLRQVLINLVGNGVKFT-EQGHVSVS 1291
Query: 763 VHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTM 822
+ L + + ++V ++ +V++T G R + + F D
Sbjct: 1292 ISLQERLENEVILR---------------VEVHDTGIGLSETARKRLFTPFTQADG---- 1332
Query: 823 EQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMG 882
S +R +GGTG+GL+IS+ LVELMG
Sbjct: 1333 ------------------------------------SMTRRFGGTGLGLAISKSLVELMG 1356
Query: 883 GEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEV 942
GEIG S G GSTF FTVT + +W+ F G R V+ +
Sbjct: 1357 GEIGVESVEGQGSTFWFTVTLSVRPEQPASVEWEA-------FAGKRVFVLSHDPVEKHF 1409
Query: 943 TRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLK 1002
L +M VH ++ A L D + D + L L
Sbjct: 1410 LETMLSGWQMQVHSGCEVEDAVECLRKDAH-----------FDLAILDISLPADLLRNL- 1457
Query: 1003 QQRRKGGLEISRNLPKIFLLATSISETDR----DELKSDGIVTLLTKPLRLSVLI----G 1054
+S ++ + +L +++E D+ ++L+ +VT+L +P+R SVL+
Sbjct: 1458 ---------LSHDISRATILLANLNERDKCVAYEQLER--VVTIL-RPVRQSVLMETMRS 1505
Query: 1055 CFQEDPESSKKLQQK--RKKPSLG----HLLKG--KQILVVDDNMVNRRVAEGALKKHGA 1106
F + + L +P H+ K +L+ +DN N+R+A LK+ G
Sbjct: 1506 LFMDHLTGERVLSYSIVVDEPDFDFPPQHVEPDGEKIVLLAEDNSANQRLATVQLKRLGY 1565
Query: 1107 IVTCVDCGRAAVD-KLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESS 1165
V G A++ + P + A MD QMP MDGF+AT +IR E+
Sbjct: 1566 QADLVTTGEQALEMYMRHPERYLAILMDCQMPVMDGFEATRRIREFEHTRQR-------- 1617
Query: 1166 AEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
H+PI+AMTA+ +Q E C++ GMDDY+SKP ++L +A
Sbjct: 1618 ----------HIPIIAMTANAMQGDREACIQAGMDDYISKPVSIQRLGEVLA 1659
>gi|427657191|ref|ZP_18952846.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414045123|gb|EKT27550.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
Length = 918
Score = 259 bits (662), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|62181468|ref|YP_217885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|375115806|ref|ZP_09760976.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|62129101|gb|AAX66804.1| sensory histidine kinase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|322715952|gb|EFZ07523.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 918
Score = 259 bits (662), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|207858224|ref|YP_002244875.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|436799619|ref|ZP_20523905.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|437327624|ref|ZP_20740566.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437341693|ref|ZP_20744816.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|445267608|ref|ZP_21410161.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445336964|ref|ZP_21415849.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|206710027|emb|CAR34382.1| sensor protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|434959649|gb|ELL53095.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|435191805|gb|ELN76361.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435193359|gb|ELN77838.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|444873862|gb|ELX98141.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444888180|gb|ELY11792.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
Length = 918
Score = 259 bits (662), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 513 WFHIHL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|437371372|ref|ZP_20749333.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435206426|gb|ELN89951.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
Length = 916
Score = 259 bits (661), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 513 WFHIHL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|421572828|ref|ZP_16018473.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402514904|gb|EJW22319.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
Length = 736
Score = 259 bits (661), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 87 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 146
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 147 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 206
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 207 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 248
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 249 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 270
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 271 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 330
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 331 WFHINL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 370
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT + P AL L D+ + + L Q + L + +
Sbjct: 371 ------LDLLSDTPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 422
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 423 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 477
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 478 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 536
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 537 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 576
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 577 LLSAGMNDYLAKPIEEEKLHNLLLRY 602
>gi|198245109|ref|YP_002216932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205353904|ref|YP_002227705.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|375120429|ref|ZP_09765596.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|375124766|ref|ZP_09769930.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|421360545|ref|ZP_15810821.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421363319|ref|ZP_15813561.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421369643|ref|ZP_15819818.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421374086|ref|ZP_15824217.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421378977|ref|ZP_15829056.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421384998|ref|ZP_15835021.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421389358|ref|ZP_15839341.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421396644|ref|ZP_15846569.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421399423|ref|ZP_15849318.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421406086|ref|ZP_15855911.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421408385|ref|ZP_15858184.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421414983|ref|ZP_15864719.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421417413|ref|ZP_15867123.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421420752|ref|ZP_15870428.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421428397|ref|ZP_15878008.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421430839|ref|ZP_15880425.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421435732|ref|ZP_15885268.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421440151|ref|ZP_15889631.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421443790|ref|ZP_15893229.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421449260|ref|ZP_15898644.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|436602026|ref|ZP_20513066.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436818420|ref|ZP_20535053.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436832643|ref|ZP_20536933.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436853010|ref|ZP_20543035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436861201|ref|ZP_20548385.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436867569|ref|ZP_20552723.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436872914|ref|ZP_20555796.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436880416|ref|ZP_20560175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436891539|ref|ZP_20566239.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436899554|ref|ZP_20570965.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436903064|ref|ZP_20573528.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436914851|ref|ZP_20579698.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436919551|ref|ZP_20582332.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436928842|ref|ZP_20588048.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436938545|ref|ZP_20593332.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436945893|ref|ZP_20597721.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436955357|ref|ZP_20602232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436966089|ref|ZP_20606758.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436969519|ref|ZP_20608516.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436985293|ref|ZP_20614878.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436993430|ref|ZP_20618223.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437004874|ref|ZP_20622104.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437018709|ref|ZP_20626914.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437027425|ref|ZP_20630314.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437043065|ref|ZP_20636578.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437050739|ref|ZP_20640884.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437061971|ref|ZP_20647337.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437066887|ref|ZP_20649949.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437073886|ref|ZP_20653328.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437082971|ref|ZP_20658714.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437097712|ref|ZP_20665167.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437110497|ref|ZP_20667843.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437118916|ref|ZP_20670651.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437129456|ref|ZP_20675932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437141834|ref|ZP_20683518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437146084|ref|ZP_20685873.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437159927|ref|ZP_20694325.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437169387|ref|ZP_20699780.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437175914|ref|ZP_20703090.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437184416|ref|ZP_20708281.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437264661|ref|ZP_20719937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437269480|ref|ZP_20722723.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437277691|ref|ZP_20727050.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437315792|ref|ZP_20737480.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437417449|ref|ZP_20753868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437463297|ref|ZP_20762979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437480007|ref|ZP_20768255.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437495814|ref|ZP_20772958.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437509365|ref|ZP_20776504.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437532862|ref|ZP_20780965.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437555663|ref|ZP_20784630.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437580414|ref|ZP_20791817.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437592576|ref|ZP_20795125.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437605158|ref|ZP_20799337.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437650084|ref|ZP_20809715.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437655967|ref|ZP_20810563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437679584|ref|ZP_20818074.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437692352|ref|ZP_20821172.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437714186|ref|ZP_20827590.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437729860|ref|ZP_20830992.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437765487|ref|ZP_20835106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|438090977|ref|ZP_20860707.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438101634|ref|ZP_20864461.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438116202|ref|ZP_20870721.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|438144756|ref|ZP_20875701.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|445128225|ref|ZP_21380117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445145461|ref|ZP_21387423.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445151337|ref|ZP_21390287.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445171253|ref|ZP_21396079.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445204238|ref|ZP_21401228.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445219252|ref|ZP_21402634.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445345456|ref|ZP_21418152.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445362071|ref|ZP_21424064.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|197939625|gb|ACH76958.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Dublin str. CT_02021853]
gi|205273685|emb|CAR38675.1| sensor protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|326624696|gb|EGE31041.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|326629016|gb|EGE35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|395981112|gb|EJH90334.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395981766|gb|EJH90987.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395987780|gb|EJH96942.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395994210|gb|EJI03286.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|395995312|gb|EJI04377.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396009098|gb|EJI18031.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396016917|gb|EJI25783.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396018630|gb|EJI27492.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396022314|gb|EJI31128.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396027517|gb|EJI36280.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396027800|gb|EJI36562.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396035018|gb|EJI43699.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396042248|gb|EJI50870.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396043797|gb|EJI52395.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396048432|gb|EJI56981.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396054665|gb|EJI63157.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396056144|gb|EJI64620.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396068286|gb|EJI76634.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396069421|gb|EJI77759.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396070557|gb|EJI78885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|434938986|gb|ELL45876.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434970964|gb|ELL63525.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434974575|gb|ELL66919.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434981242|gb|ELL73129.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434984355|gb|ELL76095.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434985645|gb|ELL77332.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434992721|gb|ELL84160.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|434999771|gb|ELL90945.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435005260|gb|ELL96182.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435005668|gb|ELL96588.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435012689|gb|ELM03364.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435019494|gb|ELM09938.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435022933|gb|ELM13229.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435029386|gb|ELM19444.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435033532|gb|ELM23424.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435034069|gb|ELM23959.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435035465|gb|ELM25310.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435045733|gb|ELM35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435046499|gb|ELM36114.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435058837|gb|ELM48144.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435062923|gb|ELM52097.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435065107|gb|ELM54213.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435072165|gb|ELM61094.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435081069|gb|ELM69723.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435083715|gb|ELM72316.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435085484|gb|ELM74037.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435088455|gb|ELM76912.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435093443|gb|ELM81783.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435097693|gb|ELM85952.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435106356|gb|ELM94373.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435107687|gb|ELM95670.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435108544|gb|ELM96509.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435118747|gb|ELN06398.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435126676|gb|ELN14070.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435128002|gb|ELN15362.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435131638|gb|ELN18849.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435136329|gb|ELN23419.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435148706|gb|ELN35422.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435149115|gb|ELN35829.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435156585|gb|ELN43075.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435159668|gb|ELN45986.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435161027|gb|ELN47269.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435172427|gb|ELN57970.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435173087|gb|ELN58612.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435180268|gb|ELN65376.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435202084|gb|ELN85938.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435218574|gb|ELO00975.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435219036|gb|ELO01413.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435226604|gb|ELO08169.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435232648|gb|ELO13737.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435240665|gb|ELO21055.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435242113|gb|ELO22424.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435242411|gb|ELO22716.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435252925|gb|ELO32416.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435257101|gb|ELO36395.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435268018|gb|ELO46648.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435272524|gb|ELO50916.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435272646|gb|ELO51035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435279984|gb|ELO57721.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435286131|gb|ELO63464.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435289972|gb|ELO66922.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435307929|gb|ELO82958.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435316025|gb|ELO89222.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435324317|gb|ELO96250.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435327717|gb|ELO99368.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|444846234|gb|ELX71415.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444855094|gb|ELX80146.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444856237|gb|ELX81275.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444861541|gb|ELX86417.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444861925|gb|ELX86794.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444871165|gb|ELX95615.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444878999|gb|ELY03108.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444884381|gb|ELY08216.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
Length = 918
Score = 259 bits (661), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 513 WFHIHL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|162449617|ref|YP_001611984.1| hybrid histidine kinase [Sorangium cellulosum So ce56]
gi|161160199|emb|CAN91504.1| Hybrid histidine kinase [Sorangium cellulosum So ce56]
Length = 949
Score = 259 bits (661), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 202/642 (31%), Positives = 302/642 (47%), Gaps = 126/642 (19%)
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA---KSQFLATVSHEIRTPMNGVLG 642
L+G F++ VE + EL+ + E A A KS+FLA +SHEIRTPMNG+LG
Sbjct: 282 LLGSAFNS------MVEANEQAFEELRVKTEQALEASRMKSEFLANMSHEIRTPMNGILG 335
Query: 643 MLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLD 702
+++++ + LD Y +T S L+S+INDVLD +K+E+G+ + V F L V+
Sbjct: 336 VIRLMQNQSLDGKMRRYVETVDASANTLMSIINDVLDFSKLEAGKYVAQHVSFDLRLVIQ 395
Query: 703 NVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVS 762
V L +S+A++KG+EL V RVP V+GDP RFRQ++TNLVGN+IKFT D+G
Sbjct: 396 EVAELMASQAHEKGLELVYRVERRVPTGVVGDPDRFRQVLTNLVGNAIKFT-DRG----- 449
Query: 763 VHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTM 822
+VL + S Q K+ +
Sbjct: 450 ---------------EVLIDASTSQQDKATAL---------------------------- 466
Query: 823 EQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMG 882
IKL V DTG GI + Q ++F F Q D S R +GGTG+GL+IS+ LVE+MG
Sbjct: 467 -----IKLAVV--DTGPGIAPDDQKKLFAAFSQVDGSLVRKHGGTGLGLAISKRLVEVMG 519
Query: 883 GEIGFVSEPGTGSTFSFT--VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRA 940
GE+G S PG GS F FT V T G +W G RALV+++
Sbjct: 520 GEVGLDSTPGQGSRFWFTIRVGVTAGGEQIRSAEWAS---------GRRALVVENSRSWR 570
Query: 941 EVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS--VLPQLALVLIDKDVWDKEI----- 993
+V HL +A + +++ ++ + +L L +++K + +
Sbjct: 571 DVVVEHL--------------VAWGFDAESAASGRDAINRLELAVLEKRPFSAAVVGVQM 616
Query: 994 -GLVLHYMLKQQRRKGGLEISRNLPKIFL--LATSISETDRDELKSDGIVTLLTKPLRLS 1050
L L L+ + L+ LP + L + +S++ + D +VT L KPLR+S
Sbjct: 617 DDLGLEEFLRTIQSVPALQ---TLPVVALYHMGSSVTLSGMD----SSMVTQLPKPLRVS 669
Query: 1051 VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTC 1110
L Q + + G + +LVVDDN +NR VA +++ G V
Sbjct: 670 ELYNTLQSALTGASTPPPSKPGAEPGKIASKLPVLVVDDNEINRYVAMEQVEQLGLRVET 729
Query: 1111 VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFG 1170
G+ A++ + A MD QMP MDG+ AT +IR E N
Sbjct: 730 ACNGQEALE-CVKRKRYVAVLMDCQMPVMDGYTATQEIRAWERSRNR------------- 775
Query: 1171 NVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
H I+A+TA + ++ + GMDDY++KP + L
Sbjct: 776 -----HTVIIALTAHALVGERDRVLAAGMDDYLAKPVRPQSL 812
>gi|417691038|ref|ZP_12340257.1| signal transduction histidine-protein kinase barA [Shigella boydii
5216-82]
gi|332087561|gb|EGI92689.1| signal transduction histidine-protein kinase barA [Shigella boydii
5216-82]
Length = 918
Score = 259 bits (661), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 192/623 (30%), Positives = 294/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P F G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCFAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|437619273|ref|ZP_20803425.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437808394|ref|ZP_20840099.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435258553|gb|ELO37813.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435300062|gb|ELO76157.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
Length = 763
Score = 259 bits (661), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 114 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 173
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 174 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 233
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 234 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 275
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 276 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 297
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 298 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 357
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 358 WFHIHL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 397
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 398 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 449
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 450 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 504
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 505 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 563
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 564 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 603
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 604 LLSAGMNDYLAKPIEEEKLHNLLLRY 629
>gi|421503274|ref|ZP_15950224.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina DLHK]
gi|400346067|gb|EJO94427.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina DLHK]
Length = 1162
Score = 259 bits (661), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 195/626 (31%), Positives = 290/626 (46%), Gaps = 115/626 (18%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
M KA AE A AK+ FLA +SHEIRTPMN ++GM + + T+LD Q DY +G
Sbjct: 428 MARAKALAEQAAQAKADFLANMSHEIRTPMNAIIGMSHLALKTDLDPRQRDYLNKIQQAG 487
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+G++ E + F L VLDN+ +L KA KG+EL +V
Sbjct: 488 QHLLGVINDILDFSKIEAGKVRVECIEFDLEQVLDNLANLIGDKAAGKGLELLFRRDAQV 547
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P V++GDP R QI+ N N++KFT+ G + VS+ LEK
Sbjct: 548 PCVLLGDPLRLGQILINYANNAVKFTE-HGEVEVSIE---------------LEKR---- 587
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
D + W LL +V DTG+G+ Q
Sbjct: 588 -----------------DGKQVW-------------------LLFSVRDTGIGLSPAQQA 611
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R+F F QADSST+R YGGTG+GL+I + L E MGGE+G SE G GS F + F G+
Sbjct: 612 RLFESFQQADSSTTRRYGGTGLGLAICKRLAEAMGGEVGVDSELGRGSRFWCRLPFALGD 671
Query: 908 RN--SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
R +L P+ ++ RG R LV+DD + V L+ + V A A +
Sbjct: 672 RQRAALQPQ--------ADLRGRRVLVVDDNANARLVLSEMLRGMTFRVSEAADGLQALA 723
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL--------P 1017
L + L+ ID W Q GLE++R + P
Sbjct: 724 LLEQAQAAG--DAFELLFID---W-------------QMPGIDGLELARRVRALALSPQP 765
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG- 1076
K+ +++ E + G+ +L KPL S+L + S G
Sbjct: 766 KVLMVSAHGREDLLQGARRMGVEDVLLKPLNPSLLFDVAMRCLDGRADSGHAHGAVSTGI 825
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN--FDACFMDL 1134
G+++L+V+DN +N+ VA L++ G V G+ A+ +L + + MD+
Sbjct: 826 PDFAGRRVLLVEDNALNQEVASALLQEAGLQVEVAGNGQQAIARLQAAADDHYQLVLMDM 885
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP +DG AT +R A +A +PI+AMTA+ + + C
Sbjct: 886 QMPVLDGLAATRLLR----------AQARFAA----------LPIVAMTANALADDRQAC 925
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ GM+D++SKP E L++ + R+
Sbjct: 926 LAAGMNDHLSKPIEPTALWSTLMRWL 951
>gi|452962749|gb|EME67856.1| multi-sensor hybrid histidine kinase, partial [Magnetospirillum sp.
SO-1]
Length = 914
Score = 259 bits (661), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 195/642 (30%), Positives = 305/642 (47%), Gaps = 106/642 (16%)
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
A+I + + + E++ K AE A AKS FLA +SHEIRTPMN ++GM + + T L
Sbjct: 154 ASIRDVTERKRVEAEVLRAKQTAEEATKAKSDFLANMSHEIRTPMNAIIGMSHLALQTRL 213
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
D Q +Y + H SG++L+ +IND+LD +KIE+G++ E + F L DV+DN+ SL KA
Sbjct: 214 DKKQRNYIEKVHRSGENLLGIINDILDFSKIEAGKMAMERIDFRLEDVMDNLASLVGLKA 273
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
KG+EL V+ +P T L G+ ++ Q V ++L +
Sbjct: 274 EDKGLELLFSVASDIP--------------TALTGDPLRLGQ------VLINLGN----- 308
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
N+V K + + G +V R ++ +L
Sbjct: 309 ------------NAV--KFTETGEIIVGAELVGRTET-----------------EAELHF 337
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
V D+G+G+ E ++F F QADSST+R YGGTG+GL+IS+ LVELMGG I SEPG
Sbjct: 338 WVRDSGIGMTPEQCGKMFQSFSQADSSTTRKYGGTGLGLAISKTLVELMGGRIWVESEPG 397
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPDV---SEFRGLRALVIDDKSIRAEVTRYHLQR 949
GS F F L + Q V E GLR LV+DD + E+ +
Sbjct: 398 KGSVFHF--------HTRLGVQAQPAARRVFRSDELMGLRVLVVDDNASAREILSSMAKG 449
Query: 950 LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009
+ V A + A ++ + + L+L+D W + + + + QR +
Sbjct: 450 FGLEVGTAWDGRQALEMVAAAEARGL--AYDLILMD---WKMPVMDGVEAVQQLQRDR-- 502
Query: 1010 LEISRNLPKIFLLATSISETDRDELKSDGIV--TLLTKPLRLSVLIGCFQE------DPE 1061
S +P + ++ E + G V T+LTKP+ + L+ E E
Sbjct: 503 ---SERVPAVVMVTAYGREEAMSNAQERGAVLKTVLTKPVTAASLLEAIGEILGKGVAAE 559
Query: 1062 SSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL 1121
S + + + K ++ L+G ++L+V+DN +N+ +A L + G V + G+AA+D L
Sbjct: 560 SYVQDRAETYKEAM-RALEGSRVLLVEDNEMNQELATELLSQAGMEVVLANHGQAALDIL 618
Query: 1122 TPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILA 1181
FD MD QMP MDG+ AT IR GN L +P++A
Sbjct: 619 AGDRGFDGVLMDCQMPVMDGYTATRMIR--------------------GNPALDGIPVIA 658
Query: 1182 MTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
MTA+ + E+ ++ GM D+++KP E ++ +AR+ G
Sbjct: 659 MTANAMTGDREKVIEAGMADHIAKPLNLENMFATMARWIKPG 700
>gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt
domain-containing protein [Geobacter bemidjiensis Bem]
gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator, HAMP and Hpt
domain-containing [Geobacter bemidjiensis Bem]
Length = 818
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 196/637 (30%), Positives = 305/637 (47%), Gaps = 116/637 (18%)
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
+++NR Q+E E+ A++A+ AKS FLA +SHEIRTPM GVLGM ++L++T L
Sbjct: 159 SSVNR--QLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTYL 216
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
Q + ++ SG+ L+ +IN++LD +KIE+GR+E E +PF LH + + +++F+ A
Sbjct: 217 SKEQARFVESVRCSGEALLGIINNILDFSKIEAGRMELEMIPFDLHQLTADAVAMFADDA 276
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+KGI L+ + +P + GDPGR RQ++ NL+GN++KFT + G + +SV L VR
Sbjct: 277 ARKGIALSCRIEPGLPVMFQGDPGRLRQVMVNLLGNAVKFTPE-GAVTLSVSL---VRRP 332
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
V+ V + + + +++++ +F D + T
Sbjct: 333 ALVRVTVEDTGIGISREAQERIFD---------------HFAQGDESMT----------- 366
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
R YGGTG+GL+I++ L ELMGG + SEPG
Sbjct: 367 -----------------------------RRYGGTGLGLAIAKQLTELMGGGMELSSEPG 397
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPD--VSEFRGLRALVIDDKSIRAEVTRYHLQRL 950
GS+FSFTV +L+P + P+ S R RALV D LQ
Sbjct: 398 KGSSFSFTV--------ALEPHQKAPPPERSYSALRSKRALVATDDP--------ELQET 441
Query: 951 EMAVHVANSMQLACSYLSDT----CSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
+ + M L C + D C P LVL+D V + GL L ++
Sbjct: 442 LLELMGGLGMDLDC--VGDAPGALCRLVAAP-FDLVLMDHCVAGTD-GLALAAAIRS--- 494
Query: 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKL 1066
+ + ++ ++ LLA + ++ + L + L VL ++
Sbjct: 495 ---VAVGHSV-RLVLLAEEPEAAPAERVREIEVALLSRRNLTQEVLYAALVSALGMEEEQ 550
Query: 1067 QQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN 1126
+ P+L L +Q+L+V+DN+VN+ V G L+ G V + G AA+ +L
Sbjct: 551 GGGEEAPTLRRL---RQVLLVEDNVVNQEVGRGLLESLGCRVKVAENGLAALKELQ-RGA 606
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
FD FMD QMP +DG +AT +IR E G S+ VPI+A+TA
Sbjct: 607 FDLIFMDCQMPVLDGLEATRRIRQREE--------GSSA----------RVPIIALTAYA 648
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
++ E C+ G DDY+SKPF EQL ++ R G
Sbjct: 649 MKGDREACLAAGADDYLSKPFSREQLSKSIERRLGCG 685
>gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 914
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 193/628 (30%), Positives = 302/628 (48%), Gaps = 111/628 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+++ + AEAA +AK QFLA +SHEIRTPMN V+GM ++L+ T+LD Q +Y + ++
Sbjct: 249 ELVKARREAEAASMAKGQFLANMSHEIRTPMNAVIGMTELLLGTDLDTEQQEYVEIVKSA 308
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L++LIND+LD +KIESG+LE E + F L V++ V + + A K +E +V
Sbjct: 309 ANGLLTLINDILDFSKIESGKLEFEKIAFDLRYVIEGVGEMMAPNAQTKQLEFTCFVDPD 368
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
++GDP R RQ++ NL GN++KFT+ KG++ + + + V ++ + + +
Sbjct: 369 CEVRLLGDPERLRQVLVNLTGNAVKFTE-KGNVDIHAAMIGEEDGMVLIRFAISDTGMGI 427
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ + + V+N+ F +D ++T
Sbjct: 428 PKDRQEAVFNS---------------FTQVDGSST------------------------- 447
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R + GTG+GLSIS+ LV LMGG +G SE G GSTF FT+ F +
Sbjct: 448 ---------------RQFEGTGLGLSISKRLVALMGGRMGLDSEVGVGSTFWFTLPFAKQ 492
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRL----EMAVHVANSMQL 962
++ P+ P S RG L++DD + + L E A +M+L
Sbjct: 493 DQ----PRKPAIKPRQS-VRGSHVLIVDDNATNRTILNKTLVSFGCFPEEAESGGEAMEL 547
Query: 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
+++ VL+D + + + V+ + R K G E +R L+
Sbjct: 548 LAQRMAEGRP------FDAVLLDHQMPEMDGEAVVRAI----RSKPGNENTR-----ILI 592
Query: 1023 ATSISET-DRDELKSDGIVTLLTKPLRLSVLIGCFQE-----DPESSKKLQQKR----KK 1072
TS+ E D K G L KP+R S+L+ E D + K R +
Sbjct: 593 LTSVGERGDARRFKDLGCCAYLNKPVRQSLLLDALAETLVGSDVKVCHKTGYNRPAIITR 652
Query: 1073 PSLGHLLKGK-QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
SLG GK ++L+V+DN+VN+RVA L+K G V G A++ + N+D F
Sbjct: 653 HSLGEEAMGKARVLLVEDNLVNQRVAVRILEKAGHTVHVAGDGLVALEAVK-KDNYDVVF 711
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP MDG+ AT IR + +E +PI+AMTA ++
Sbjct: 712 MDIQMPGMDGYAATATIRKMAPRFSE-------------------LPIIAMTAHAMKGDR 752
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+C+ GMDDY+SKP + + L V R+
Sbjct: 753 EKCIASGMDDYISKPVKPKGLLKMVQRW 780
>gi|418856256|ref|ZP_13410904.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392820606|gb|EJA76456.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
Length = 909
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 260 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 319
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 320 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 379
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 380 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 421
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 422 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 443
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 444 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 503
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ + A+ T
Sbjct: 504 WFHINL------DLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCT-------------- 543
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 544 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 595
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 596 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 650
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 651 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 709
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 710 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 749
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 750 LLSAGMNDYLAKPIEEEKLHNLLLRY 775
>gi|119898693|ref|YP_933906.1| putative sensor-regulator protein [Azoarcus sp. BH72]
gi|119671106|emb|CAL95019.1| putative sensor-regulator protein [Azoarcus sp. BH72]
Length = 1012
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 189/652 (28%), Positives = 309/652 (47%), Gaps = 139/652 (21%)
Query: 603 NDYHEMME------------LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
NDY + +E A A+ A AKS FLA +SHEIRTPMN V+G+ + + T
Sbjct: 247 NDYRQHLEELVEQRTRQLSIATAEAQQASRAKSDFLARMSHEIRTPMNAVIGLTHLALRT 306
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
EL Q DY + S + L+ +IND+LD +KIE+G+L E +PF LHDV+DN+ ++ +
Sbjct: 307 ELSPQQRDYLRKIRGSSQALLGIINDILDFSKIEAGKLRLEQIPFTLHDVIDNLSNIVTV 366
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
KA +KG+++ + + +P+ + GDP R QI+ NL N++KFT+ R
Sbjct: 367 KAAEKGLDVLLAIDPAIPDRMRGDPLRLSQILINLGTNAVKFTE---------------R 411
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKL 830
+V V ++++K+ + V R++
Sbjct: 412 GEVVVDCRLIDKTEDCV---------------------------------------RVRF 432
Query: 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
VT DTG+GI + +F F QAD S +R +GGTG+GL+IS+ L+E+M G + SE
Sbjct: 433 SVT--DTGIGISAAQRGLLFQSFHQADGSITRRFGGTGLGLAISKQLIEIMEGSLEVASE 490
Query: 891 PGTGSTFSFTVTF----TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH 946
PG GSTFSF + F ER+ L P+ ++ P LV+DD + R
Sbjct: 491 PGEGSTFSFVIPFGTVAGARERHYLAPEELRHKP---------ILVVDDNPTARAMLRTM 541
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
++ A S + A + + A+VL+D+D+ +
Sbjct: 542 IEHFHFVADTAASGEEAILKIREAGEQGY----AVVLMDRDMPGLD-------------- 583
Query: 1007 KGGLEISRNL---------PKIFLLATSISETDRDELK-SDGIVTLLTKPLRLSVLIGCF 1056
G+E +R + P+I L+A+ + E G+ +LTKP+ S+L
Sbjct: 584 --GIEAARRIKLDLSLPTPPRILLMASYTKDHALQEAGHGAGLDGILTKPVGPSLLFNSL 641
Query: 1057 QEDPESSKKLQQKR----KKPSLGHL-LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCV 1111
+ + +++ + +P+ G ++G ++L+V+DN +N++VA L++ G V
Sbjct: 642 LKVLGHAHRVEPEEPLFADQPTQGLAGIRGARVLLVEDNPINQQVATEFLRQAGLQVDLA 701
Query: 1112 DCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGN 1171
G VD+ +D MD+QMP MDG +AT +IR ++
Sbjct: 702 GDGYEGVDRAVAT-AYDLILMDVQMPGMDGLEATRRIRARDS------------------ 742
Query: 1172 VGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
H PI+AMTA + E+ GM+ +++KP + +L T + R+ G
Sbjct: 743 ----HTPIVAMTAHALDTDRERSRAAGMNGHLTKPIDPAELETTLVRWIPPG 790
>gi|411009278|ref|ZP_11385607.1| two-component system sensor protein [Aeromonas aquariorum AAK1]
Length = 1056
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 207/667 (31%), Positives = 310/667 (46%), Gaps = 138/667 (20%)
Query: 571 WTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA--KSQFLAT 628
W I+AS +++ +F A + + V + + E + A+ EAA +A K F+A
Sbjct: 303 WGLISASCATLLL------LFGAGVASL--VHSRHREQL---AQQEAARLARVKGDFIAN 351
Query: 629 VSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRL 688
+SHEIRTPMN ++G+ +L LD Q + H +G+ L+ +IND+LD +KIESGRL
Sbjct: 352 MSHEIRTPMNAIMGLTYLLEQGGLDDGQRALVRKIHQAGQALLGIINDILDFSKIESGRL 411
Query: 689 EPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGN 748
E E VPF L +VLD+V ++ S+ +K +EL + + +IGD R Q++ NL GN
Sbjct: 412 ELEQVPFSLEEVLDHVAAIMSTCVGEKHLELVVSSAPERATHLIGDALRLEQVLLNLTGN 471
Query: 749 SIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWK 808
+IKFT+ R +V+VK ++
Sbjct: 472 AIKFTE---------------RGEVEVKVEL----------------------------- 487
Query: 809 SWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTG 868
EQ G LL V DTG+GIP E Q IF F QADSSTSR +GGTG
Sbjct: 488 ------------EAEQDGTATLLFRVRDTGIGIPPEQQANIFNAFSQADSSTSRRFGGTG 535
Query: 869 IGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGL 928
+GL+ISR LV LMGG+IG SE G GS F F V + ER + + Q+V
Sbjct: 536 LGLTISRRLVSLMGGDIGVTSELGKGSEFWFRVRLAQVERPEVFHERLQHVS-------- 587
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
L+ DD + + + L V S + A +L + ++L+D
Sbjct: 588 -LLIADDNQVTRDTLSMTVGSLGWQSRVVESGEQALHHLLRQGE-----RFDVILLD--- 638
Query: 989 W------DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL----KSDG 1038
W E + + +QQ R I ++AT+ S+ +EL S+
Sbjct: 639 WMMPGMDGLETCVAIRRAFEQQDRS----------PIIIMATAYSQ---EELMRRPGSEQ 685
Query: 1039 IVTLLTKPLRLSVLIGC----FQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNR 1094
+ +L KP+ S L E E + L+ ++ L + IL+VDD+ +N
Sbjct: 686 VDLVLHKPVTGSSLYNAVARLIHEKREHVEPLESGQRHQRLPDV----HILLVDDSDINL 741
Query: 1095 RVAEGALKKHGAIV-TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLEN 1153
VA L++ GA+V T +D RA D MD+QMP MDG++AT ++R L
Sbjct: 742 EVATRLLQREGAVVITAIDGERALACLADSAQRIDLVLMDVQMPVMDGYEATRRLRQLP- 800
Query: 1154 EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLY 1213
G +P+LA+TA V + E + GM+D+++KP + EQL
Sbjct: 801 -------------------GREDIPVLALTAGVFKDQREAALASGMNDFIAKPLDVEQLI 841
Query: 1214 TAVARFF 1220
+ R+
Sbjct: 842 ATLLRYL 848
>gi|424918579|ref|ZP_18341943.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392854755|gb|EJB07276.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 1127
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 203/652 (31%), Positives = 299/652 (45%), Gaps = 128/652 (19%)
Query: 588 GHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
G + A + ++++ E+ L +RAEAAD AKS+FLA +SHEIRTPMNGVLGM ++L
Sbjct: 557 GQHWVALFTDVTELKSREEELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELL 616
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
T LD Q + SG L+++IND+LD +KI++G+++ F + + +++V +L
Sbjct: 617 AKTNLDTRQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVEDVATL 676
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
SS A +K IEL + + +P VIGD GRFRQI+TNLVGN++KFT+ +GH+FV V
Sbjct: 677 LSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTE-RGHVFVDV---- 731
Query: 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR 827
F+M M
Sbjct: 732 --------------------------------------------GFEMAGGGEIMAS--- 744
Query: 828 IKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF 887
+ +EDTG+GIP E +F F Q D+S++R + GTG+GL+I+ LV+L GG +
Sbjct: 745 ----IRIEDTGIGIPAEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNV 800
Query: 888 VSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHL 947
SE G GS F+ + F L+PK P +G R LV+DD + +
Sbjct: 801 ESEWGKGSVFTVNLPFAVAA-ARLEPK-----PLPINVQGARILVVDDNDVNRRIL---- 850
Query: 948 QRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007
+ QL+ + LA++ D+ +VL Y +
Sbjct: 851 -----------TEQLSLWGFDGVAAEGGGTGLAILEAAADLGITVDAVVLDYHMPDM--- 896
Query: 1008 GGLEISR---------NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058
G +++R LP IFL + IS T+++ +G L+ KP R +VL E
Sbjct: 897 NGADVARRLRADRRFVELPIIFLTSMDISGTEKEFAALNGHAHLM-KPARANVLRNTVVE 955
Query: 1059 DPESSK----------KLQQKRKKPSLGHLLKGKQ-------ILVVDDNMVNRRVAEGAL 1101
+S+ +LQ + P +Q +LV +DN VN+ V L
Sbjct: 956 VVRASRVKQASEAEIARLQAEAAAPVPAPAPLTQQRAAEFVDVLVAEDNEVNQIVFTQIL 1015
Query: 1102 KKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161
+ G VD G AV H MD+ MP M+G QAT IR E
Sbjct: 1016 QGTGLSFLVVDNGEEAVAAWE-RHRPRIIMMDVSMPVMNGHQATQTIREREK-------- 1066
Query: 1162 GESSAEMFGNVGLWH-VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
G H VPI+ +TA +++ E C+ GMDDY+SKP E L
Sbjct: 1067 -----------GQGHRVPIIGVTAHALESDRELCLDAGMDDYMSKPISPELL 1107
>gi|437816457|ref|ZP_20842637.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435308605|gb|ELO83537.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
Length = 918
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 298/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAVRIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ + A+ T
Sbjct: 513 WFHINL------DLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|348029065|ref|YP_004871751.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
gi|347946408|gb|AEP29758.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
Length = 1045
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 195/623 (31%), Positives = 304/623 (48%), Gaps = 104/623 (16%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
M+ A+ A AKS+FLA +SHEIRTPMNGVLGM+ +L+DT L + Q + A NS
Sbjct: 303 MLNATKAAQEASNAKSEFLARMSHEIRTPMNGVLGMIDLLLDTRLTSDQTHKLKVAKNSA 362
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
L+++IND+LD +++E+GR+E E + F+L ++NV + +++ KGIEL + VSD
Sbjct: 363 SSLLTIINDILDFSRVEAGRMEIESLDFNLPQQIENVAQTLAIRSDAKGIELIVDVSDIQ 422
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
++V+GD R RQ++TNL+ N+IKFT + G I VR+K
Sbjct: 423 QKMVVGDAVRLRQVLTNLISNAIKFT-EVGQIV--------VRAK--------------- 458
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
T+ Q +L +VEDTG+GIP
Sbjct: 459 ---------------------------------TINQGDTTRLECSVEDTGIGIPDSKLE 485
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
+F FMQ D+ST+R YGG+G+GL+I L+ELMGG I S G+ FSF +
Sbjct: 486 HLFESFMQVDTSTTRVYGGSGLGLAICERLIELMGGRIQVSSSINKGTIFSFDINL---- 541
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
+ SL Q ++ ++ + LV+DD E+ L+ + +A A L
Sbjct: 542 KTSLLEDKPQARSNIVDW---QILVVDDNETNREILASQLENWGVKPILAIDAFDALDKL 598
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+ S +L L++ D ++ +K+ GL L +K R + KI +L++
Sbjct: 599 N-----SAPLELDLIITDMNMPNKD-GLSLVADIKMIDRYKDI-------KILMLSSMSF 645
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVLIGCFQ----EDPESSKKLQQKRKKPSLGHLLK--- 1080
+ E S G+ + L KP+ S L ++ +S ++ L ++K
Sbjct: 646 QMSVAEFGSLGLDSCLMKPVGSSELFNTIALMSGDESTASNNIKAVNANNQLPEIVKWPS 705
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP---HNFDACFMDLQMP 1137
++L+V+DN VN+ VAEG LKK G G A+ L + MD QMP
Sbjct: 706 YHKVLIVEDNSVNQLVAEGLLKKFGLQYGVAIDGSIAIQTLIQSELDQPYTLILMDCQMP 765
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
+DG++AT +IR + + E + N +PI+AMTA+ ++ E+C++
Sbjct: 766 VLDGYKATAKIRQGD------------AGERYKN-----IPIIAMTANAMKGDREKCLQS 808
Query: 1198 GMDDYVSKPFEDEQLYTAVARFF 1220
GM+DYV KP + L A+ F
Sbjct: 809 GMNDYVPKPIDVGVLQKALVSGF 831
>gi|436766882|ref|ZP_20520698.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434963725|gb|ELL56786.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
Length = 918
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 297/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGFGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 513 WFHIHL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|428305491|ref|YP_007142316.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
gi|428247026|gb|AFZ12806.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Length = 1154
Score = 258 bits (660), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 209/659 (31%), Positives = 307/659 (46%), Gaps = 150/659 (22%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLA +SHEIRTPMN ++GM +L++TEL Q D+ +T S L+++IND+LD +
Sbjct: 434 KSQFLANMSHEIRTPMNAIIGMTGLLLNTELTPLQRDFVETTQTSSDALLTIINDILDLS 493
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIESG+LE E F+L ++ L L + KA K IEL +S +VP ++ GD R RQI
Sbjct: 494 KIESGKLELENYSFNLRTCIEEALDLLTPKAAGKNIELVCLISPQVPIIIWGDSTRLRQI 553
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL+ N+IKFT +KG I +SV+ A + K+K L K L+
Sbjct: 554 LVNLLSNAIKFT-EKGEILLSVN-AQEFE-----KNKKLSKKLD---------------- 590
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
+N N +I + V+D+G+GIP + R+F F Q DSST+
Sbjct: 591 ---------------NNLNR-----QISIQFAVKDSGIGIPADRMDRLFKSFSQVDSSTT 630
Query: 862 RTYGGTGIGLSISRCLVELMGG-------------------------------------- 883
R YGGTG+GL+IS+ L E+MGG
Sbjct: 631 RHYGGTGLGLAISKQLSEMMGGQMWVESGGVIAGIPPQEWQPVSNNLLEQINKENFYTKS 690
Query: 884 --------------EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLR 929
++ + P +GSTF FT+ E E N+L V S+ +G R
Sbjct: 691 NLNQNVNEIFLDATQLQLANSP-SGSTFYFTI-IAEAEANTLAVD---LVNSNSDLKGKR 745
Query: 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQ---LALVLIDK 986
L++DD + ++ Q M L+ S S + L Q L ++D
Sbjct: 746 LLIVDDNTTNRQILVLQAQSWGM---------LSYSLESGAKTLEFLKQGEVFDLAILDM 796
Query: 987 DVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKP 1046
+ D + GL L K+ R+ L + LP + L TS++ ++ + LTKP
Sbjct: 797 QMPDMD-GLTLG---KEIRK---LSAYKKLPLVML--TSLNGSESPNYQKVDFAAFLTKP 847
Query: 1047 LRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK---QILVVDDNMVNRRVAEG 1099
++ S +LI E P K + P + L + +IL+ +DN+VN++VA
Sbjct: 848 VKQSHLYNLLIHILSEQPVQVKS--SRTAAPKINQHLAEELPLRILLTEDNVVNQKVALH 905
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
LK+ G + G A+ L ++D MD+QMPEMDG AT QI
Sbjct: 906 ILKRMGYEADIANNGLEALVALRR-QSYDVVLMDMQMPEMDGLTAT-----------RQI 953
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
SS E I+AMTA+ +Q E C+ GMDDYVSKP + L A+++
Sbjct: 954 CQEWSSEE--------RPRIIAMTANAMQGDRELCLNAGMDDYVSKPIRVDVLIEALSK 1004
>gi|350552273|ref|ZP_08921477.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349794650|gb|EGZ48461.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1258
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 197/625 (31%), Positives = 306/625 (48%), Gaps = 104/625 (16%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
++ +AEAA+ K++FLA +SHE+RTPMNGV+GM +L++TEL Q +YA NSG+
Sbjct: 719 QMAFQAEAANATKTEFLANISHELRTPMNGVIGMNGLLLETELTEEQREYAAIVRNSGEL 778
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
++S+IND+LD +KIE+G+L+ E + F L +L +++ + + +A KG+EL + +P
Sbjct: 779 MMSMINDILDVSKIEAGKLDLEILAFDLEGMLGDLVDIMALRAYDKGLELFYTLEPGLPR 838
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
+ GDPGR RQI++NL+ N+IKFT KG I + V VQ
Sbjct: 839 HMRGDPGRLRQILSNLICNAIKFT-PKGEIAIRV---------------------ACVQQ 876
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
+SD L V DTG+GIP + ++
Sbjct: 877 QSDMAV----------------------------------LRFAVRDTGIGIPPDKLGQL 902
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
F F Q DSST+R YGG G+GL+I++ L E+M GEIG VSE G GS F FTV R
Sbjct: 903 FEKFTQVDSSTTRRYGGMGLGLAIAKQLTEMMHGEIGVVSEAGQGSEFWFTV------RL 956
Query: 910 SLDPKWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
P+ Q P + +E +G R LV+D ++ LQ M + Q A L
Sbjct: 957 EKQPEDLQKSPRERAELKGARVLVLDASQGHGDMLGQQLQSWGMRITHVIDQQGAFERLR 1016
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
+ + ++L++ + ++ G + L+Q+ R L+ +R + LL
Sbjct: 1017 EAAADD---PFHIMLVNTQM-SRDEGEAISSALRQEPR---LQATR----LILLTPLGIR 1065
Query: 1029 TDRDELKSDGIVTLLTKPLRLSVLIGCFQ--------EDPESSKKLQQKRKKPSLGHLLK 1080
D ++ G LTKP++ L G D S+ Q + ++ +K
Sbjct: 1066 GDARYYETLGFAAYLTKPVKPHELQGALSLVLAKPTTADASSTLNAAQIITRHTVREAIK 1125
Query: 1081 -----GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
+IL+V+DN++N+R+ LKK G V G A++ L H +D MD++
Sbjct: 1126 RFADCKARILLVEDNLINQRMMMQMLKKLGLRADAVAHGAEALNALEMTH-YDLVIMDVK 1184
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP MDG +AT QIR + SS + +PI+A+TA + E+C+
Sbjct: 1185 MPIMDGLEATRQIRAHATPMR-------SSQD---------IPIIAITAHAMHLDREKCL 1228
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARFF 1220
+ GM+DY++KP L + R+
Sbjct: 1229 QAGMNDYLAKPITLHSLIEVLDRYL 1253
>gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
Length = 1310
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 186/618 (30%), Positives = 295/618 (47%), Gaps = 104/618 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ K AE A+ AKS+FLA +SHEIRTPMN ++GM + + T L+ Q Y + +S
Sbjct: 536 ELQTAKEAAENANQAKSEFLANMSHEIRTPMNSIIGMSSLALQTPLNDKQRGYIEKVSHS 595
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+++IND+LD +KIE+ +++ E VPF L ++ V + K +KG+EL I +
Sbjct: 596 AESLLNIINDILDFSKIEARKMDIENVPFMLPSLIHKVAHVLELKIEEKGLELIIDIDAE 655
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP+ V+GDP R RQI+ NL N++KFTQ I + H SK + D ++ S
Sbjct: 656 VPQQVVGDPTRLRQILLNLGNNAVKFTQQGEIIIRAAH------SKNNQDDNIIHFS--- 706
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V+DTG+GI + Q
Sbjct: 707 -----------------------------------------------VQDTGIGISKDKQ 719
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+F F QAD+ST+R +GGTG+GL+IS+ L++LMGG+I SE GSTF FT+ +
Sbjct: 720 NNLFQSFSQADTSTTRRFGGTGLGLAISKRLIQLMGGDIWVESEENKGSTFHFTINL-QS 778
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
N P ++S+ +V+DD + EV + ++ L ++ H +S A Y
Sbjct: 779 TGNVPSPYALNNHTNLSQ-----VMVVDDNNSAREVLKASVEALGLSCHTCSSGHEAIQY 833
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
++ ++S L+LID + + + +L + R L I +
Sbjct: 834 IASLKASS--QPYPLMLIDWKMPELDGIDTCKAILAETRDDTPLTI-----------IMV 880
Query: 1027 SETDRDELKSDG----IVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKP--SLGHL 1078
+ +D+ + G I LTKP+ S L + PES + + S +
Sbjct: 881 TAHRQDDARKAGYGLPISAYLTKPVTTSSLFDQIIQLCGPESVSLIDHRSNGNDISFSYE 940
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L G ++L+V+DN +NR +AE L + G + T G+ A+ L +FD MD QMP
Sbjct: 941 LAGAKVLLVEDNEINRELAEELLSRSGILFTSATNGQEAI-SLLGSDDFDCILMDCQMPI 999
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG+ AT +IR + +PI+AMTA+V+ + G
Sbjct: 1000 MDGYTATKKIRTM--------------------TQYKDIPIIAMTANVMPEDIKYAKASG 1039
Query: 1199 MDDYVSKPFEDEQLYTAV 1216
M+D+++KP E ++ +
Sbjct: 1040 MNDHIAKPIHFETMFNTL 1057
>gi|366159778|ref|ZP_09459640.1| hybrid sensory histidine kinase BarA [Escherichia sp. TW09308]
gi|432373355|ref|ZP_19616392.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE11]
gi|430894862|gb|ELC17146.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE11]
Length = 918
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 192/623 (30%), Positives = 295/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y S T S ++L+ V +E + H L Q + ++
Sbjct: 557 SETPLEVVY-SPTFSALPPAHYDMILLGIAVTFREPLTMQHERLAQ---------AVSMT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPVLTEFCHQ----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|110806548|ref|YP_690068.1| hybrid sensory histidine kinase BarA [Shigella flexneri 5 str. 8401]
gi|424838938|ref|ZP_18263575.1| hybrid sensory histidine kinase BarA [Shigella flexneri 5a str. M90T]
gi|110616096|gb|ABF04763.1| sensor-regulator [Shigella flexneri 5 str. 8401]
gi|383467990|gb|EID63011.1| hybrid sensory histidine kinase BarA [Shigella flexneri 5a str. M90T]
Length = 918
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 294/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSIQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SSTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------RQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|334705873|ref|ZP_08521739.1| hybrid sensory histidine kinase BarA [Aeromonas caviae Ae398]
Length = 906
Score = 258 bits (659), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 198/628 (31%), Positives = 296/628 (47%), Gaps = 119/628 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + L+ T L +Q
Sbjct: 267 LEQIEIQNVELDMAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTSLTPSQT 326
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY QT S ++L+ +IND+LD +K+E+G+L+ E +PF L D L+ + L A+ K +
Sbjct: 327 DYMQTIEKSARNLLGIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQL 386
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL++ V VP+ + GDP R +Q++TNL GN+IKFT+ R VDV+
Sbjct: 387 ELSLQVDAAVPDYLTGDPMRLQQVLTNLTGNAIKFTE---------------RGNVDVR- 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
V+ + N +++L V + DT
Sbjct: 431 ---------VEQTGESSGN------------------------------KVRLRVLIRDT 451
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI E Q ++F F QADSS SR YGGTG+GL I++ LV+ MGG+I F SE G GS F
Sbjct: 452 GIGISEEQQRQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFKSELGKGSVF 511
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
SF + DVS L +D R + R L + H A
Sbjct: 512 SFHLDL-----------------DVSPLPQSERLPLD----RIQGKRVWLLEPDPFTH-A 549
Query: 958 NSMQLACSYLSDTCSTSV---LPQLA---LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
+ + L + D S +V P ++ +VLI LH + R GL+
Sbjct: 550 SLLALLGEWHLDVHSLTVDEEWPPMSSQDMVLIGSS--------TLHSPQQVIARLDGLD 601
Query: 1012 ISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+N +L +S D + + G V L+KP+ L+ PE+ ++
Sbjct: 602 GQQN---TIVLLSSHEPALYDAMLAHGAVHCLSKPINHRKLLHALLS-PEAVRRAPLPAP 657
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
P ++ ++L VDDN N ++ LK+ V G+ AV+ L FD F
Sbjct: 658 TP---RSVQAVKVLAVDDNAANLKLIAAMLKEMVTEVVVCKNGKEAVN-LAQSQPFDIIF 713
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP MDG AT IRH + +N + PI+A+TA I
Sbjct: 714 MDIQMPVMDGISATQAIRH--HSLNTE------------------TPIVAVTAHAIPGER 753
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ ++ GMDDY++KP ++ L + F
Sbjct: 754 ERLIRQGMDDYLAKPIDEGMLAQLITDF 781
>gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
Length = 1325
Score = 258 bits (659), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 197/625 (31%), Positives = 297/625 (47%), Gaps = 112/625 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ E K A+A AK FLA +SHEIRTPMN +LGM + ++T+LDA Q Y +
Sbjct: 591 QELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINE 650
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S K+L+ +IND+LD +KIE+G+L E + F L DVLDNV ++ S KA +KGIE + +
Sbjct: 651 SAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDP 710
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P +IGDP R Q++ NL GN++KFTQ +G I +S + +V + V + +
Sbjct: 711 HIPLGLIGDPLRLGQVMVNLCGNAVKFTQ-QGEIVISARVRQLNEQQVMLLFAVKDTGIG 769
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
Q K + ++N F DN+ T
Sbjct: 770 IAQEKLNDLFNA---------------FSQADNSIT------------------------ 790
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ----------------RQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGL 834
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
E K + + R LV+DD + A ++ +S+ A
Sbjct: 835 QE-----AKMRDIAQPLYGLANKRVLVVDDN--------------DSARNILDSLLTAMR 875
Query: 966 YLSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
+ T S L +L D D + + L + + GL R+ K FL+
Sbjct: 876 FNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNGIELLTRVKSLGL---RDHTKCFLVT 932
Query: 1024 TSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQ-QKRKKPSLGHL 1078
+ + D S I L+ KP+ L ++ + D K+ + + +P+
Sbjct: 933 AYGRDINLDSENSKLIDALIVKPVNPSNLLDAIVTSYGIDHVRHKQNELPQHSRPN---- 988
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
G+++L+V+DN VN+ VA G L++ G VT + G+ A++KL +FD MD+QMP
Sbjct: 989 FTGQKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENA-DFDLVLMDMQMPV 1047
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKC 1197
MDG AT IR G W ++PI+AMTA+ + A E+C++
Sbjct: 1048 MDGITATKHIR---------------------TNGRWKNLPIVAMTANAMAADIERCLQV 1086
Query: 1198 GMDDYVSKPFEDEQLYTAVARFFMS 1222
GM+ ++SKP E ++ Y + +F S
Sbjct: 1087 GMNGHLSKPIEVDKFYQVLKQFLKS 1111
>gi|423196685|ref|ZP_17183268.1| hypothetical protein HMPREF1171_01300 [Aeromonas hydrophila SSU]
gi|404632139|gb|EKB28768.1| hypothetical protein HMPREF1171_01300 [Aeromonas hydrophila SSU]
Length = 1056
Score = 258 bits (659), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 207/667 (31%), Positives = 312/667 (46%), Gaps = 138/667 (20%)
Query: 571 WTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA--KSQFLAT 628
W I+AS +++ +F A + + V + + E + A+ EAA +A K F+A
Sbjct: 303 WGLISASCATLLL------LFGAGVASL--VHSRHREQL---AQQEAARLARVKGDFIAN 351
Query: 629 VSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRL 688
+SHEIRTPMN ++G+ +L LD Q + H +G+ L+ +IND+LD +KIESGRL
Sbjct: 352 MSHEIRTPMNAIMGLTYLLEQGGLDDGQRALVRKIHQAGQALLGIINDILDFSKIESGRL 411
Query: 689 EPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGN 748
E E VPF L +VLD+V ++ S+ +K +EL + + +IGD R Q++ NL GN
Sbjct: 412 ELEQVPFSLEEVLDHVAAIMSTCVGEKHLELVVSSAPERATHLIGDALRLEQVLLNLTGN 471
Query: 749 SIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWK 808
+IKFT+ R +V+VK V+ ++
Sbjct: 472 AIKFTE---------------RGEVEVK----------VEQEA----------------- 489
Query: 809 SWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTG 868
EQ G LL V DTG+GIP E Q IF F QADSSTSR +GGTG
Sbjct: 490 --------------EQDGTATLLFRVRDTGIGIPPEQQANIFNAFSQADSSTSRRFGGTG 535
Query: 869 IGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGL 928
+GL+ISR LV LMGG+IG SE G GS F F V + R + + Q+V
Sbjct: 536 LGLTISRRLVSLMGGDIGVTSELGKGSEFWFRVRLAQVARPEVFHERLQHVS-------- 587
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
L+ DD + + + L V S + A +L + ++L+D
Sbjct: 588 -LLIADDNQVTRDTLSMTVGSLGWQSRVVESGEQALHHLLRQGE-----RFDVILLD--- 638
Query: 989 W------DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL----KSDG 1038
W E + + +QQ R I ++AT+ S+ +EL S+
Sbjct: 639 WMMPGMDGLETCVAIRRAFEQQDRS----------PIIIMATAYSQ---EELMRRPGSEQ 685
Query: 1039 IVTLLTKPLRLSVLIGC----FQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNR 1094
+ +L KP+ S L E E + L+ ++ L + IL+VDD+ +N
Sbjct: 686 VDLVLHKPVTGSSLYNAVARLIHEKREHVEPLESGQRHQRLPDV----HILLVDDSDINL 741
Query: 1095 RVAEGALKKHGAIV-TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLEN 1153
VA L++ GA+V T +D +A P D MD+QMP MDG++AT ++R L
Sbjct: 742 EVATRLLQREGAVVITAIDGEQALACLAEPAQRIDLVLMDVQMPVMDGYEATRRLRQLP- 800
Query: 1154 EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLY 1213
G +P+LA+TA V + E + GM+D+++KP + EQL
Sbjct: 801 -------------------GREDIPVLALTAGVFKDQREAALASGMNDFIAKPLDVEQLI 841
Query: 1214 TAVARFF 1220
+ R+
Sbjct: 842 ATLLRYL 848
>gi|146305870|ref|YP_001186335.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
gi|145574071|gb|ABP83603.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
Length = 1165
Score = 258 bits (659), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 289/626 (46%), Gaps = 115/626 (18%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
M KA AE A AK+ FLA +SHEIRTPMN ++GM + + T+LD Q DY +G
Sbjct: 431 MARAKALAEQAAQAKADFLANMSHEIRTPMNAIIGMSHLALKTDLDPRQRDYLNKIQQAG 490
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+G++ E + F L VLDN+ +L KA KG+EL +V
Sbjct: 491 QHLLGVINDILDFSKIEAGKVRVECIEFDLEQVLDNLANLIGDKAAGKGLELLFRRDAQV 550
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P V++GDP R QI+ N N++KFT+ G + VS+ LEK
Sbjct: 551 PCVLLGDPLRLGQILINYANNAVKFTE-HGEVEVSIE---------------LEKR---- 590
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
D + W LL +V DTG+G+ Q
Sbjct: 591 -----------------DGKQVW-------------------LLFSVRDTGIGLSPAQQA 614
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R+F F QADSST+R YGGTG+GL+I + L E MGGE+G SE G GS F + F G+
Sbjct: 615 RLFESFQQADSSTTRRYGGTGLGLAICKRLAEAMGGEVGVDSELGRGSRFWCRLPFALGD 674
Query: 908 RN--SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
R +L P+ ++ RG R LV+DD + V L+ + V A A +
Sbjct: 675 RQRAALQPQ--------ADLRGRRVLVVDDNANARLVLSEMLRGMTFRVSEAADGLQALA 726
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL--------P 1017
L + L+ ID W Q GLE++R + P
Sbjct: 727 LLEQAQAAG--DAFELLFID---W-------------QMPGIDGLELARRVRALALSPQP 768
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG- 1076
K+ +++ E + G+ +L KPL S+L + G
Sbjct: 769 KVLMVSAHGREDLLQGARRMGVEDVLLKPLNPSLLFDVAMRCLDGRADSGHAHGAAGTGI 828
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN--FDACFMDL 1134
G+++L+V+DN +N+ VA L++ G V G+ A+ +L + + MD+
Sbjct: 829 PDFAGRRVLLVEDNALNQEVASALLQEAGLQVDVAGNGQQAIARLQAAADDHYQLVLMDM 888
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP +DG AT +R A +A +PI+AMTA+ + + C
Sbjct: 889 QMPVLDGLAATRLLR----------AQARFAA----------LPIVAMTANALADDRQAC 928
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ GM+D++SKP E L++ + R+
Sbjct: 929 LAAGMNDHLSKPIEPTALWSTLMRWL 954
>gi|417237135|ref|ZP_12035102.1| signal transduction histidine-protein kinase BarA [Escherichia coli
9.0111]
gi|386214220|gb|EII24643.1| signal transduction histidine-protein kinase BarA [Escherichia coli
9.0111]
Length = 918
Score = 258 bits (659), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 192/623 (30%), Positives = 294/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + SVLP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSVLPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|329908338|ref|ZP_08274851.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
IMCC9480]
gi|327546735|gb|EGF31680.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
IMCC9480]
Length = 998
Score = 258 bits (659), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 199/641 (31%), Positives = 307/641 (47%), Gaps = 112/641 (17%)
Query: 590 IFHAAINRIAQVENDYH-EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM 648
++ A + R+ + D E+ + K AE A+ A+ FL+TVSHEIRTPMN V+GM +L
Sbjct: 322 VYTAVLWRVMRHREDVEVELKKAKIVAEQANAARGAFLSTVSHEIRTPMNAVIGMSGLLR 381
Query: 649 DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLF 708
+T LDA Q ++ +S L+ +I+++LD ++I++G+L E HL +++
Sbjct: 382 ETALDAQQEEFTVAIEDSANALMVIIDEILDFSRIDAGKLTIEATDCHLLSLVEGSADAL 441
Query: 709 SSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD 768
+ KA Q+G+ L +V +P V D GR RQ++ NL+GN++KFT A +
Sbjct: 442 AVKARQQGLRLLCFVEPDLPVTVSVDAGRLRQVLLNLIGNAVKFTP-----------AGE 490
Query: 769 VRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRI 828
VR +L + +N QH V F V D
Sbjct: 491 VR--------ILVRQVNR-QHDLCTVR-----FEVAD----------------------- 513
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
TG+GI +F PF+QAD S +R YGGTG+GLSI + LVELMGG IG
Sbjct: 514 --------TGIGITAPVIALLFNPFVQADGSVTRKYGGTGLGLSICKRLVELMGGHIGVD 565
Query: 889 SEPGTGSTFSF--TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH 946
S+PG GSTF F VT G + + E LV+ I+A + +
Sbjct: 566 SKPGAGSTFWFELPVTVVAGSAAKV---------ALPEHARTAVLVVQPHRIQAHILSAY 616
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
++ M V V +S + A + + S Q +VLID + D +
Sbjct: 617 MKSWGMPVLVVDSAEQALAQQQRHLAGS---QKQVVLIDSALPDMPAAAL---------- 663
Query: 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKL 1066
+ L +S + LLA S+ R++ ++ G L +PLR S L E + +
Sbjct: 664 RSALAVSAPESRFILLAD--SDAAREQAEAQGFHASLQQPLRQSTLFDALSNALERRQSV 721
Query: 1067 ----QQKRKKPSLGHLLKGKQ----ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
++R P+ ++ + + +L+V+DN++N+++A L + G V G+ A+
Sbjct: 722 VPVAVERRDAPAPVNVARERSDHRLLLLVEDNLINQKLAVHQLTQMGYAVDVASNGQEAL 781
Query: 1119 DKL-TPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177
D L T P+ MD QMP MDGF+AT +IR +EQ G H+
Sbjct: 782 DALATVPYAL--VLMDCQMPVMDGFEATRRIRQ-----SEQAGGG-------------HI 821
Query: 1178 PILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
I+AMTA+ +Q E+C++ GMDDY+SKP E L +A+
Sbjct: 822 QIVAMTANAMQGDRERCLEVGMDDYLSKPIRRELLAEMLAQ 862
>gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
AHT2]
gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
AHT2]
Length = 1263
Score = 258 bits (659), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 201/623 (32%), Positives = 297/623 (47%), Gaps = 120/623 (19%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
+ + + AE A AKS+FLA +SHEIRTPMN V+G+ Q+L TEL+ Q D + H S
Sbjct: 529 LEQARREAERASRAKSEFLANMSHEIRTPMNAVIGLSQLLAQTELNEEQRDQVRKIHQSS 588
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIESGRLE E F L++V++ V +LF K + G+EL + +
Sbjct: 589 RMLLGIINDILDFSKIESGRLELECRDFRLNEVVEQVATLFGDKVHAGGLELLYDIPPHL 648
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P ++GD R QI+ NL+ N+ KFT+ G + + + +V+ N
Sbjct: 649 PRTLVGDSLRLSQILVNLLSNATKFTERGGTVELGI--------------RVVAPVANDQ 694
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
V +T G + EQL R
Sbjct: 695 ATLRFHVRDTGIGM-------------------SKEQLAR-------------------- 715
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
+F PF QAD+ST+R YGGTG+GL ISR LVE MGGE+ S PG GSTFSFT+T G
Sbjct: 716 -LFRPFSQADTSTTRRYGGTGLGLVISRRLVEKMGGELEVESAPGKGSTFSFTLTLPLG- 773
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
+ ++ D E +G R L++DD+ ++ R L C Y+
Sbjct: 774 ------RDRRGAIDCPETKGRRVLIVDDQESARQIMRQLLHH--------------CRYI 813
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYM-------------LKQQRRKGGLEISR 1014
++ ++ + LVL + + ++L +M L++ RR+G L+ +R
Sbjct: 814 TEEAASGE-DAIELVLAAEKRGESFDFILLDWMMPGGMNGSQTCRELERLRRQGKLQQTR 872
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
P + + A + E D L I L KPL S L + E L R PS
Sbjct: 873 P-PILMVSAYAREEID---LPKGLIADYLAKPLTASSLYDALVQ-AEGGAGL--VRPSPS 925
Query: 1075 LG-HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L L+G+++L+V+DN +N+ VA LKK GA V + G A+ K + MD
Sbjct: 926 LQVPDLQGRRLLLVEDNEINQEVATQLLKKTGARVRTAENGAEAL-KEVRAEAPELILMD 984
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
LQMP MDGF+AT +R A G + PI+A++A V+ +
Sbjct: 985 LQMPVMDGFEATRTLR----------AEG------------YDGPIIALSAAVMDDDRRR 1022
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAV 1216
+ G+DD++ KP E LY A+
Sbjct: 1023 AREAGVDDHLGKPIESADLYAAL 1045
>gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM603]
gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM603]
Length = 1325
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 199/625 (31%), Positives = 295/625 (47%), Gaps = 112/625 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ E K A+A AK FLA +SHEIRTPMN +LGM + ++T+LDA Q Y +
Sbjct: 591 QELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINE 650
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S K+L+ +IND+LD +KIE+G+L E + F L DVLDNV ++ S KA +KGIE + +
Sbjct: 651 SAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDP 710
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P +IGDP R Q++ NL GN++KFTQ +G I +S + +V + V + +
Sbjct: 711 HIPLGLIGDPLRLGQVMVNLCGNAVKFTQ-QGEIVISARVRQINEQQVMLLFAVKDTGIG 769
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
Q K + ++N F DN+ T
Sbjct: 770 IAQEKLNDLFNA---------------FSQADNSIT------------------------ 790
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ----------------RQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGL 834
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
E K + + R LV+DD + A ++ +S+ A
Sbjct: 835 QE-----AKMRDIAQPLYGLANKRVLVVDDN--------------DSARNILDSLLTAMR 875
Query: 966 YLSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
+ T S L +L D D + + L + + GL R+ K FL+
Sbjct: 876 FNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNGIELLTRVKSLGL---RDHTKCFLVT 932
Query: 1024 TSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL----- 1078
+ + D S I L+ KP+ S L+ +S + R K + L
Sbjct: 933 AYGRDINLDSENSKLIDALIVKPVNPSNLLDAIV----TSYGIDHVRHKQNELPLHTRPN 988
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
G+++L+V+DN VN+ VA G L++ G VT + G+ A++KL +FD MD+QMP
Sbjct: 989 FAGQKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENA-DFDLVLMDMQMPV 1047
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKC 1197
MDG AT IR G W ++PI+AMTA+ + A E+C++
Sbjct: 1048 MDGITATKHIR---------------------TNGRWKNLPIVAMTANAMAADIERCLQV 1086
Query: 1198 GMDDYVSKPFEDEQLYTAVARFFMS 1222
GM+ ++SKP E ++ Y + +F S
Sbjct: 1087 GMNGHLSKPIEVDKFYQVLKQFLKS 1111
>gi|338533502|ref|YP_004666836.1| sensory box histidine kinase/response regulator [Myxococcus fulvus
HW-1]
gi|337259598|gb|AEI65758.1| sensory box histidine kinase/response regulator [Myxococcus fulvus
HW-1]
Length = 929
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 198/634 (31%), Positives = 303/634 (47%), Gaps = 118/634 (18%)
Query: 605 YHEMMELKARAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQ 661
YH++ +L+ AA + AKS FLAT+SHEIRTPMN ++GM +L+D L Q D+
Sbjct: 235 YHDITDLERARRAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRTLTEEQRDFVA 294
Query: 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
T S + L++L+NDVLD +KIE+GR E E PF L +++VL L + +A++KG++L
Sbjct: 295 TIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGC 354
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLE 781
++ +P++++GD R RQ++ NLVGN++KFT+ G + VSV
Sbjct: 355 DMAPELPQMLVGDASRLRQVLLNLVGNALKFTEHGGAV-VSVE----------------G 397
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
L + ++D W L +V+DTG GI
Sbjct: 398 TPLAGAEGEAD--------------W---------------------ALTFSVQDTGPGI 422
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE--PGTGSTFSF 899
P + + +F PF Q D+S SR +GGTG+GL+I + LVE MGG I SE PG G+TF F
Sbjct: 423 PEDRRAGLFQPFNQLDASVSRRFGGTGLGLAICKRLVEAMGGTIWVESEGVPGRGTTFRF 482
Query: 900 TVTFTEGERN-SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
T+ + ++ P+ +Q + +G R L++DD ++ + LQ + A
Sbjct: 483 TLRAQAAPQAYAVQPRQEQAL-----LQGRRVLIVDDNALFRRLLGRQLQAWGLQPAEAA 537
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
S A + L + VLID H+M I
Sbjct: 538 SGMEALAQLQAGA------RFEAVLID------------HHMPGLDGTALAERIREREET 579
Query: 1019 IFLLATSISETDRDELKSDGIVT-LLTKPLRLS----VLIGCF-QEDPESSKKLQQKRKK 1072
L +S R +G+ +L++PL+ S L+ CF Q P+ + ++ +
Sbjct: 580 RTLPLVLVSTPGRRGNPPEGLFAGVLSRPLKDSQLYDALMSCFSQHIPQLTAA---RQAR 636
Query: 1073 PSLGHLLKGKQ--------ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
PS G++ IL+V+DN N+++A L++ G GR A+ L
Sbjct: 637 PSRAGPFPGERPGDTVPLDILLVEDNATNQKLALLVLERLGYRADVALNGRQALQALN-Q 695
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
+D MDLQMPEMDG +AT +IR E+ V W ++AMTA
Sbjct: 696 KRYDVVLMDLQMPEMDGLEATRRIRE----------------ELPPKVQPW---VIAMTA 736
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ + + EQC GMDD++ KP E L A+ R
Sbjct: 737 NAMDSDREQCFAAGMDDFLGKPIRVEALTAALLR 770
>gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain-containing protein [Marinomonas
mediterranea MMB-1]
gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
MMB-1]
Length = 2241
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 206/658 (31%), Positives = 317/658 (48%), Gaps = 110/658 (16%)
Query: 573 AINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHE 632
A+N G I++ ++ R V + E+ K AE A+ AKS FLAT+SHE
Sbjct: 1469 ALNILAGQAAISIENALVYETLEKR---VTDRTEELNVAKVLAEEANRAKSLFLATMSHE 1525
Query: 633 IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEF 692
IRTPMN ++G+ ++ + T L+ Q D+ S + L+ +IND+LD +KIE+ ++ E
Sbjct: 1526 IRTPMNAIIGLSRLTLKTPLNLDQKDFMDKILESAEGLLGIINDILDYSKIEAHKMVLEQ 1585
Query: 693 VPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKF 752
F L V+ ++++ + KA +K +EL + + VP +++GDP R +QI+TNLV N+IKF
Sbjct: 1586 TRFELQSVMSRIVTICALKAKEKALELHVDIDSDVPALLLGDPLRLQQILTNLVSNAIKF 1645
Query: 753 TQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812
T+ KG FV + ++ LE++
Sbjct: 1646 TE-KG--FVGIRVS-------------LEQT----------------------------- 1660
Query: 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
Q G ++ V D+GVG+ E Q +F PF QAD+S +R YGGTG+GL+
Sbjct: 1661 -----------QEGTPQVRFDVTDSGVGLTQEHQRELFKPFTQADASITRKYGGTGLGLA 1709
Query: 873 ISRCLVELMGGEIGFVSEPGTGSTFSFTV-TFTEGERNSLDPKWQQYVPDVSEFRGLRAL 931
I R LVELM G+I S G GSTF F + + E N L K +F +R L
Sbjct: 1710 ICRQLVELMKGQIWVRSHLGKGSTFGFRIPVHSYQEDNDLAYKHL-------DFSKVRVL 1762
Query: 932 VIDDKSIRAEVTRYHLQRLEMAVHV----ANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
V+DD +I Y L+ E+ V A L C + ST+ D
Sbjct: 1763 VVDDSNIARRAIVYMLK--EIGVQCDDVGAPIEALECIREGNGASTNY-----------D 1809
Query: 988 VWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSD-GIVTLLTKP 1046
V E L L R+ ++NL I + +S S+ ++ L D I +L KP
Sbjct: 1810 VLLMERYLAGVDCLDTIRKIKKESSNKNLTSI--IVSSFSDEEKQLLSVDRDIDDVLDKP 1867
Query: 1047 LRLSVLIGCFQED-PESSKKLQQKRKK-PSLGHLLKGKQILVVDDNMVNRRVAEGALKKH 1104
+ LS L E P + P G +L+ K++L+V+DN +N RV G L++
Sbjct: 1868 VDLSSLRQALVEHYPNRLVPAHAATDELPVEGAVLRHKRVLLVEDNELNSRVVLGYLEES 1927
Query: 1105 GAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGES 1164
G ++ + G+ A++K+ H +D MDLQMP MDG AT +IR + +E
Sbjct: 1928 GVMLDMAENGQQALEKVQEVH-YDVVLMDLQMPIMDGITATRKIRAVFDEKT-------- 1978
Query: 1165 SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+PI+AMTA ++C++ GM+DY++KP + ++LY + R S
Sbjct: 1979 ------------LPIVAMTAHASVEDKQRCLEAGMNDYITKPVDIDELYGVMKRHMSS 2024
>gi|157148322|ref|YP_001455641.1| hybrid sensory histidine kinase BarA [Citrobacter koseri ATCC
BAA-895]
gi|157085527|gb|ABV15205.1| hypothetical protein CKO_04139 [Citrobacter koseri ATCC BAA-895]
Length = 918
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 192/624 (30%), Positives = 298/624 (47%), Gaps = 110/624 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ + + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEIQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ + A+ T L + V
Sbjct: 513 WFHINL------DLNPNVISDAPPTRCLVGKRLAYVEPNATAAQCTLDMLSDTPLEV--- 563
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
S T S L ++LI V E + QQ R L + +
Sbjct: 564 --------IYSPTFSALPLDHYDILLISVPVTFNE------PLTMQQER---LAKAAAMT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
LLA ++ + ++LK G L KPL + L+ E ++ ++ P L
Sbjct: 607 DFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCHLNQHVE-----PLLT 661
Query: 1077 HLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
K ++ VDDN N ++ L+ V D G AV++ FD MD+Q
Sbjct: 662 DENKIAMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVER-AKQMQFDLILMDIQ 720
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 721 MPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLL 760
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARF 1219
GM+DY++KP E+E+L++ + R+
Sbjct: 761 SAGMNDYLAKPIEEEKLHSLLLRY 784
>gi|434387854|ref|YP_007098465.1| signal transduction histidine kinase [Chamaesiphon minutus PCC 6605]
gi|428018844|gb|AFY94938.1| signal transduction histidine kinase [Chamaesiphon minutus PCC 6605]
Length = 696
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 196/622 (31%), Positives = 301/622 (48%), Gaps = 91/622 (14%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
Q +ND E + K AE+A+ AKS FLA +SHEIRTPMNGV+GM +L+DTEL + Q ++
Sbjct: 152 QHQNDLLE--QSKKVAESANKAKSAFLAAMSHEIRTPMNGVIGMTGLLLDTELTSQQHEF 209
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
T +SG L++LIND+LD +KIESG+LE ++ PF++ D ++ L L + KA +K +EL
Sbjct: 210 VSTIRHSGDALLTLINDILDFSKIESGKLELDYQPFNIRDCIEETLDLLAPKAAEKNLEL 269
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
A + P + GD R RQI+ NLVGN +KFT + G + V V K+ +D
Sbjct: 270 AYLIYKNTPNYLYGDVTRIRQILVNLVGNGLKFT-NSGEVIVGV-----TARKIAAED-- 321
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
+D V + V R+ V+DTG+
Sbjct: 322 -----------ADAVVTADDTYEV--RF-------------------------VVKDTGI 343
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GIP + R+F F Q DSST+R YGGTG+GL IS+ L ELM G + S GS F F
Sbjct: 344 GIPQDKIDRLFKAFSQVDSSTTRNYGGTGLGLIISKRLTELMHGRMWVESNSDGGSNFFF 403
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
T+ + +Q P ++ +G R L+++D + ++ Q M H S
Sbjct: 404 TIIAKASPATTSSTWKEQSQP--AQLQGKRLLIVEDNATHRKILALQAQSWGMHAHATES 461
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
A L ++ L ++D + + + GL L +++ + LP +
Sbjct: 462 GAEALKLL------NLRGHFDLAILDMQMPEMD-GLTLAQKIRE------FPEYQQLPLV 508
Query: 1020 FLLATSISETDRDELKSDGI--VTLLTKPL---RLSVLIGCFQEDPESSKKLQQKRKKPS 1074
L + +I +R E+++ + L KP+ +L ++ + E+ ++ K
Sbjct: 509 MLSSLNI---NRSEIEAANVSFAATLNKPIGHFQLQDVLAHILGESENKSIVKPKASNYD 565
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
+IL+ +DN+VN++VA LK+ G G V +L +D MDL
Sbjct: 566 RYQATFPLRILLAEDNLVNQKVAMHMLKRIGYQADIAMNG-VEVLELLRDRAYDVVLMDL 624
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP+MDG +AT R + E E I+AMTA ++ ++C
Sbjct: 625 QMPKMDGMEAT---RRILTEFPEHRCP----------------TIIAMTASALEGDKQEC 665
Query: 1195 MKCGMDDYVSKPFEDEQLYTAV 1216
+ GM DYV+KP + EQL A+
Sbjct: 666 LAAGMHDYVTKPVKLEQLAQAL 687
>gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM573]
gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM573]
Length = 1325
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 199/625 (31%), Positives = 295/625 (47%), Gaps = 112/625 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ E K A+A AK FLA +SHEIRTPMN +LGM + ++T+LDA Q Y +
Sbjct: 591 QELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINE 650
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S K+L+ +IND+LD +KIE+G+L E + F L DVLDNV ++ S KA +KGIE + +
Sbjct: 651 SAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDP 710
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P +IGDP R Q++ NL GN++KFTQ +G I +S + +V + V + +
Sbjct: 711 HIPLGLIGDPLRLGQVMVNLCGNAVKFTQ-QGEIVISARVRQLNEQQVMLLFAVKDTGIG 769
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
Q K + ++N F DN+ T
Sbjct: 770 IAQEKLNDLFNA---------------FSQADNSIT------------------------ 790
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ----------------RQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGL 834
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
E K + + R LV+DD + A ++ +S+ A
Sbjct: 835 QE-----AKMRDIAQPLYGLANKRVLVVDDN--------------DSARNILDSLLTAMR 875
Query: 966 YLSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
+ T S L +L D D + + L + + GL R+ K FL+
Sbjct: 876 FNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNGIELLTRVKSLGL---RDHTKCFLVT 932
Query: 1024 TSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL----- 1078
+ + D S I L+ KP+ S L+ +S + R K + L
Sbjct: 933 AYGRDINLDSENSKLIDALIVKPVNPSNLLDAIV----TSYGIDHVRHKQNELPLHTRPN 988
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
G+++L+V+DN VN+ VA G L++ G VT + G+ A++KL +FD MD+QMP
Sbjct: 989 FAGQKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENA-DFDLVLMDMQMPV 1047
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKC 1197
MDG AT IR G W ++PI+AMTA+ + A E+C++
Sbjct: 1048 MDGITATKHIR---------------------TNGRWKNLPIVAMTANAMAADIERCLQV 1086
Query: 1198 GMDDYVSKPFEDEQLYTAVARFFMS 1222
GM+ ++SKP E ++ Y + +F S
Sbjct: 1087 GMNGHLSKPIEVDKFYQVLKQFLKS 1111
>gi|436807529|ref|ZP_20527572.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434968485|gb|ELL61237.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
Length = 918
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 194/626 (30%), Positives = 297/626 (47%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNVIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R I+ + A+ T
Sbjct: 513 WFHIHL------DLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCT-------------- 552
Query: 958 NSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
LSDT V P AL L D+ + + L Q + L + +
Sbjct: 553 ------LDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHER--LAKAAS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK G L KPL + L+ E + + +P
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLN-----HHPEPL 659
Query: 1075 LGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L K ++ VDDN N ++ L+ V D G AVD+ FD MD
Sbjct: 660 LMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+E+L+ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEEKLHNLLLRY 784
>gi|386827592|ref|ZP_10114699.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386428476|gb|EIJ42304.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 762
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 195/627 (31%), Positives = 304/627 (48%), Gaps = 103/627 (16%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+A+++ E+ K AE+A AKSQFLAT+SHEIRTPMNGVLGM ++L+DT L+ Q
Sbjct: 229 LAKIQKRDKELEHAKELAESASQAKSQFLATMSHEIRTPMNGVLGMTELLLDTGLNERQR 288
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
A+T NSG+ L+++INDVLD +KIE+G L F +H ++++ L LF+ QK +
Sbjct: 289 HLAETVQNSGQTLMTIINDVLDFSKIEAGHLALYNSEFDVHALVEDTLDLFAGAIVQKKL 348
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
L +++ VP+++ GD R RQI++NL+ N+IKFT + G + + V ++ ++V +K
Sbjct: 349 ALCSHIAANVPKMLSGDLVRLRQILSNLINNAIKFT-EVGEVVIKVTQVNNDATRVQLK- 406
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
F + D T
Sbjct: 407 -----------------------FAIYD-------------------------------T 412
Query: 838 GVGIPLEAQVRI-FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
G+GIP EA+ I F PF Q D S SR YGGTG+GL+IS+ L +LMGGEIG S+ GS
Sbjct: 413 GIGIP-EAKCPILFQPFTQVDGSMSRRYGGTGLGLAISKQLAQLMGGEIGVESKINQGSL 471
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
F FT + + ++ P Q +P L+ L++ K+ ++ +L + V
Sbjct: 472 FWFTAWLDKLQTPTVSPA-QDKLP------ALQVLIVAYKNHCVQILAEYLTTWGLHVDF 524
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
+ Q A T T P +VL++ K+ + L +K+Q+ +
Sbjct: 525 CDE-QSAVLAQVQTAITQHTP-YDVVLLELMHNPKQDSIALAQAIKEQQESTHI------ 576
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF---QEDPESSKKLQQKRKKP 1073
+L S+ + + L+ I +L KP+R + L C +P + +Q
Sbjct: 577 ----ILIASVDQVRKSYLQHPAISAILHKPIRQARLYQCLCNVINNPFPQTEAEQTDSTE 632
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
+IL+ +DN+VN++ L+ G V V+ G + +L +D FMD
Sbjct: 633 RF-----NAKILLAEDNIVNQQYVRLVLEDLGCQVDLVEDGEQVLKQLR-LQAYDLIFMD 686
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNE 1192
QMP +DG AT IR + + N H +PI+A+TA +Q E
Sbjct: 687 CQMPHLDGLAATKLIRQ----------------QGYLNAKKNHAIPIIALTAHAMQGDRE 730
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARF 1219
C++ GMDDY+SKP +QL +A +
Sbjct: 731 YCLQIGMDDYLSKPVSKQQLREILAHW 757
>gi|416379922|ref|ZP_11684004.1| two-component hybrid sensor and regulator [Crocosphaera watsonii WH
0003]
gi|357265778|gb|EHJ14498.1| two-component hybrid sensor and regulator [Crocosphaera watsonii WH
0003]
Length = 868
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 199/625 (31%), Positives = 306/625 (48%), Gaps = 103/625 (16%)
Query: 606 HEMMELKARAEAAD---VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQT 662
E+ E KA +A + +AKS+FL+ + HEIRTP+N V GM +L+DTEL Q ++
Sbjct: 197 EEIAEQKASEKALEELNLAKSEFLSMMGHEIRTPLNAVTGMTGLLLDTELSDQQKEFVNI 256
Query: 663 AHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIY 722
NSG++L+++IN++LD +KIE+ +LE E PF L ++ VL LF S+A+QK +ELA
Sbjct: 257 IRNSGENLLTMINNILDFSKIEANKLELEEAPFELGLCIEEVLRLFVSQASQKKLELAYL 316
Query: 723 VSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEK 782
+ P ++GD R +QI+ NL+GN++KFT + G + + V
Sbjct: 317 LEPNTPSAIVGDSTRLKQILANLIGNAVKFTPE-GEVVIYVSST---------------- 359
Query: 783 SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIP 842
V++ + EN +L V+DTG+GIP
Sbjct: 360 --------------------VIEGGEGEEN-------------PNYELRFAVKDTGIGIP 386
Query: 843 LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902
E R+F PF Q D+ST+R YGGTG+GL IS+ L ELMGG++ S+ G GSTF+FT+
Sbjct: 387 TERCHRLFQPFSQVDASTTRQYGGTGLGLVISKRLSELMGGKMWVHSKEGKGSTFNFTLR 446
Query: 903 FTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
T+ NS QQ E G R L+IDD ++ Q M +S +
Sbjct: 447 -TKAAPNSSPVTSQQ---GERELMGKRILIIDDNLTSQKILINQTQSWGMFTCAVDSGEK 502
Query: 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
A +L + V ++D ++ D GL L +++Q LP L
Sbjct: 503 ALEWLKQGITFDV------AILDMNLPDMN-GLELVREIRKQPN------CTRLPLTML- 548
Query: 1023 ATSISETDRD-ELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGH 1077
++I+ET+R + + V +L KP++ S VL+ F E P + ++ Q +
Sbjct: 549 -SAITETERTFQSSEEEFVAVLCKPVQRSQLYNVLMEIFSEIPRAPIRVTQSQSVQCSEK 607
Query: 1078 LLKGK----QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L G+ +ILV +D +VN++V L+K G V G+ ++ L +D MD
Sbjct: 608 SLMGQTHPLKILVAEDVVVNQQVIHLLLEKLGYCADIVSDGQEVLEALK-NFAYDVVLMD 666
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP-ILAMTADVIQASNE 1192
++MPEMDG AT I N P I+AMTA+ ++ E
Sbjct: 667 IRMPEMDGLTATDHICQ--------------------NYAPDKRPRIIAMTAESMEGDRE 706
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVA 1217
+ + GMDDY+ KP ++L A++
Sbjct: 707 RFIAGGMDDYICKPVRIKELQEALS 731
>gi|157780820|gb|ABV71919.1| hypothetical protein [Brassica rapa subsp. pekinensis]
Length = 323
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 149/332 (44%), Positives = 201/332 (60%), Gaps = 37/332 (11%)
Query: 903 FTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
F ++ SL + +P S FRG+RA+V+D K +RA VTRYH++RL ++V V S++
Sbjct: 2 FERCDKCSLKKPTVENLP--SSFRGMRAIVVDAKPVRAAVTRYHMKRLGISVDVMTSLRT 59
Query: 963 ACSYLSDTCSTSVLP----QLALVLIDKDVW------DKEIGLVLHYMLKQQRRKGGLEI 1012
A S S + S LP +L ++L++KD W D EI +Q + +
Sbjct: 60 AVSTASGR-NGSPLPSGTTKLDMILVEKDSWISTEDIDAEI--------RQMNSRTNGNV 110
Query: 1013 SRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
PK+ L AT+I+ ++ D KS G T++ KPLR S++ C Q+ E K QQ +
Sbjct: 111 RHKTPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKARQQHPE 170
Query: 1072 KPS---LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
S L LL GK+ILV+DDNMVNRRVA GALKK GA V C + G+ A+ L PH+FD
Sbjct: 171 GSSPATLKSLLTGKKILVIDDNMVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHSFD 230
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
ACFMD+QMP+MDGF+AT QIR +E E E+ WH+PILAMTADVI
Sbjct: 231 ACFMDIQMPQMDGFEATRQIRMMEKEAKEKTKLE------------WHLPILAMTADVIH 278
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
A+ E+C+K GMD YVSKPFE+E LY +VA+ F
Sbjct: 279 ATYEECLKSGMDGYVSKPFEEENLYKSVAKSF 310
>gi|218547698|ref|YP_002381489.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ATCC
35469]
gi|422807992|ref|ZP_16856420.1| hsp90-like protein [Escherichia fergusonii B253]
gi|424815154|ref|ZP_18240305.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ECD227]
gi|218355239|emb|CAQ87846.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia fergusonii ATCC 35469]
gi|324111190|gb|EGC05173.1| hsp90-like protein [Escherichia fergusonii B253]
gi|325496174|gb|EGC94033.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ECD227]
Length = 918
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 194/628 (30%), Positives = 304/628 (48%), Gaps = 118/628 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLTIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT+ R +D+
Sbjct: 389 ELTLNIKGDVPDNVIGDPLRLQQIITNLVGNAIKFTE---------------RGNIDI-- 431
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 432 -LVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQ--LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
+ L Y + + S LP+ ++L+ V +E L LH+ +R L+ +
Sbjct: 557 SETPLEVIY---SPTFSALPESHYDIMLLGIAVTFRE-PLTLHH----ER----LDKAVA 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+ LLA ++ + ++LK +G+ L KPL + L+ +E K + S
Sbjct: 605 MTDFLLLALPCHAQVNAEKLKQEGVGACLLKPLTSTRLLPALKE-------FGNKNQIHS 657
Query: 1075 LGHLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
L + K ++ VDDN N ++ L+ V D G AV++ FD
Sbjct: 658 LSSTDENKLAMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVER-AKQMPFDLIL 716
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP+MDG +A I L ++ P++A+TA +
Sbjct: 717 MDIQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQK 756
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM DY++KP E+E+L+ + R+
Sbjct: 757 EKLLGAGMSDYLAKPIEEERLHNLLLRY 784
>gi|119715628|ref|YP_922593.1| PAS sensor protein [Nocardioides sp. JS614]
gi|119536289|gb|ABL80906.1| PAS sensor protein [Nocardioides sp. JS614]
Length = 977
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 200/621 (32%), Positives = 289/621 (46%), Gaps = 105/621 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + A A AKS FLAT+SHEIRTP+NGVLG+ ++++ T LD Q YA+ +
Sbjct: 444 ELGRARDAALAGSRAKSTFLATMSHEIRTPLNGVLGLTELMLTTRLDGQQGRYAEGIRVA 503
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G+ L+ +IND+LD +KIE+GRLE E V + +LD + + A +KG+ L + S
Sbjct: 504 GEALLQVINDILDFSKIEAGRLELEEVDLDVARLLDETARMVAGPAQEKGLALVVRCSPE 563
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP + GD R RQ++ NL N+IKFT+ G + +S LE++
Sbjct: 564 VPPGLRGDAVRLRQVLLNLTSNAIKFTR-TGEVVLSAQ---------------LERA--- 604
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
PV D + ++ V DTG+GI +
Sbjct: 605 ---------------PVAD-------------------VASVRF--EVADTGIGIDPAQR 628
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+F F QADS+T+R +GGTG+GL+ISR LV MGG IG G GS F V
Sbjct: 629 EHLFDAFTQADSTTTRRFGGTGLGLAISRQLVTAMGGAIGVEPRSGPGSRFWVVVPLPV- 687
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+ P+ + D +RG ALV+DD L R + V +A+S A
Sbjct: 688 --RAGQPQAHLALADA--WRGQSALVVDDSESSRTALVEQLTRWGVEVDLASSGDEALVR 743
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
L + +LAL+ D+ I GL L M++ + P++ AT
Sbjct: 744 LHQAAAAGAPYRLALL----DLSMPGINGLDLAAMIE------------DAPELAGTATI 787
Query: 1026 ISETDRDELKS----DGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKG 1081
+ +D D L + G+ L KP+R L+ + P +G
Sbjct: 788 LLTSDTDVLPTASLPAGLAARLVKPVRPHALVEAIADLPNGPSGTPAPEPA----PEPRG 843
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++LVV+D+ +N+ VA G L+ G V G AA++ L +FDA MD MP MDG
Sbjct: 844 ARLLVVEDSEINQLVAIGILEHLGYQVEVAADGLAALEALR-TQSFDAVLMDCLMPVMDG 902
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+QAT +IR LE G GL PI+AMTA + E+C+ GMDD
Sbjct: 903 YQATAEIRRLE----------------LGGRGL---PIIAMTASAVAGDRERCLAAGMDD 943
Query: 1202 YVSKPFEDEQLYTAVARFFMS 1222
Y++KP L T +A + S
Sbjct: 944 YITKPVTSGSLETVLAHWLRS 964
>gi|251786060|ref|YP_003000364.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)]
gi|253772363|ref|YP_003035194.1| hybrid sensory histidine kinase BarA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162712|ref|YP_003045820.1| hybrid sensory histidine kinase BarA [Escherichia coli B str. REL606]
gi|254289471|ref|YP_003055219.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli BL21(DE3)]
gi|242378333|emb|CAQ33110.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)]
gi|253323407|gb|ACT28009.1| Hpt sensor hybrid histidine kinase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974613|gb|ACT40284.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli B str. REL606]
gi|253978778|gb|ACT44448.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli BL21(DE3)]
Length = 918
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 294/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P+
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPATD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
Length = 1334
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 200/643 (31%), Positives = 305/643 (47%), Gaps = 103/643 (16%)
Query: 590 IFHAAINR-IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM 648
+ INR I Q + + + AE A+ AKS FLA +SHE+RTPMN +LGML +L
Sbjct: 550 VLMMGINRDITQQREAENILQSARQAAEEANKAKSAFLANMSHELRTPMNAILGMLTLLR 609
Query: 649 DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLF 708
T L+ Q DYA + + + L+ L+ND+LD +KIE+G++ E +PF +H +L ++ +
Sbjct: 610 KTGLNNKQADYAVKSEAATRTLLRLLNDILDFSKIEAGKMVLECIPFDIHVMLRDLAVIL 669
Query: 709 SSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD 768
SS K +E+ + +P+ V GD R +QI+TNL GN++KFT+ +G + + +
Sbjct: 670 SSNLKIKKVEVLFDIDPTLPQFVEGDSMRLQQILTNLGGNALKFTE-QGEVVLFI----- 723
Query: 769 VRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRI 828
KVL K D TL F V D
Sbjct: 724 ---------KVL---------KQDSQQVTLH-FGVRD----------------------- 741
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
TG+GI E Q IF F QA++ST+R +GGTG+GL IS+ V LMGG +
Sbjct: 742 --------TGIGIAPEHQESIFGGFTQAEASTTRRFGGTGLGLVISQRFVALMGGRLELE 793
Query: 889 SEPGTGSTFSFTVTFTEGERNSL---DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRY 945
S+PG GS F FT+T ++L + V LR LV+DD ++ +
Sbjct: 794 SQPGQGSLFHFTITLPLSSPSNLVIDNEIPSTLVSRAQVLNHLRVLVVDDNPTACDLIKR 853
Query: 946 HLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005
+ L+ V VA S A + + + ID W GL K R
Sbjct: 854 MGESLKWTVDVATSGDQALQLMKQQRDNGI--TYGALFID---WQMP-GLDGWQTSKYVR 907
Query: 1006 RKGGLEISRNLPKIFLLATS-----ISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDP 1060
L + N P I ++ + ++ D+ DG L KP+ S+L+ +
Sbjct: 908 E---LMPADNAPMIVMITAHDREMLLQRSEEDQALLDG---YLVKPITASMLLDSVID-- 959
Query: 1061 ESSKKLQQKRKKPSLG---HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
S++ Q KP + + L Q+L+V+DN+ N+++A L+ GA VT + G+ A
Sbjct: 960 ALSERKQPDITKPRVAESSYQLSDIQLLIVEDNLNNQQIARELLEDEGATVTIANNGKEA 1019
Query: 1118 VDKLT-PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH 1176
++ L P FD MDLQMP MDGF AT IR ++GL
Sbjct: 1020 IEILERTPALFDVVLMDLQMPVMDGFNATRYIRE--------------------SLGLKE 1059
Query: 1177 VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+PI+AMTA+ + + + C+ GM+D++ KPF+ L + ++
Sbjct: 1060 LPIIAMTANAMASDRDACLAAGMNDHIGKPFDLNNLIQTIRKY 1102
>gi|126725013|ref|ZP_01740856.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium
HTCC2150]
gi|126706177|gb|EBA05267.1| sensor histidine kinase/response regulator [Rhodobacteraceae
bacterium HTCC2150]
Length = 767
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 198/643 (30%), Positives = 306/643 (47%), Gaps = 106/643 (16%)
Query: 591 FHAAINRI--AQVENDYHEMMELKA---RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
F A+++ + + E D E EL A +A+AA+ AKS+FLA +SHEIRTPMNGV+GM Q
Sbjct: 210 FSASVDALEFSLTERDEREA-ELNAAMIKADAANKAKSEFLANMSHEIRTPMNGVIGMAQ 268
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
++++T+L Q YA T +SG L+ +IND+LD +KI++G++ + PF L V +
Sbjct: 269 LMLETDLSDDQNLYANTIQSSGSALVEIINDILDYSKIDAGKMTLKNAPFDLEQVAQDCS 328
Query: 706 SLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
L S++A KG+E+ + S +P+ IGD GR RQI+ N++GN+IKFT+ KG +
Sbjct: 329 PLMSAQALHKGLEVVLDFSQDLPKGYIGDSGRVRQILMNILGNAIKFTE-KGSV------ 381
Query: 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQL 825
E ++N +Q +
Sbjct: 382 ---------------EFAVNGIQSGDE--------------------------------- 393
Query: 826 GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
I L ++++DTG+GIP IF PF QA+ + +R + GTG+GL+I +V+LMGG I
Sbjct: 394 --IALELSIKDTGIGIPQNKLQSIFVPFEQAEGAKNRQFDGTGLGLAIVNHMVDLMGGSI 451
Query: 886 GFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRY 945
SE G GS F + + P+ ++ ++ R LV+DD I + R
Sbjct: 452 SVESEIGKGSVFILKIALPIAQNV---PQQKREKLTMNSIRSRNILVVDDLEINQRIFRE 508
Query: 946 HLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005
L++ + VA S A L S LA++ V D G+ L +++
Sbjct: 509 RLEKWGHNISVAGSADEARKILEKNESF----DLAILDYQMPVED---GISLARWMQEHA 561
Query: 1006 RKGGLEISRNLPKIFLLATSISETDRDE--LKSDGIVTLLTKPL---RLSVLIGCFQEDP 1060
+ RN+P + + + + D D V L KP+ RL +I P
Sbjct: 562 K------FRNVPLLLCSSAELGQGKGDSSITDVDFFVERLQKPVIFDRLLQVINNALTLP 615
Query: 1061 --ESSKKLQQKRKKPSLGH--LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRA 1116
E+ K Q K L + ++L+ +DN N+ V + LKK + + G+
Sbjct: 616 SVENLPKAQDNTKSKPLNENSSIDKLRVLIAEDNRTNQIVIKSMLKKEQMTLKFANNGKL 675
Query: 1117 AVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH 1176
AV+ D MD+ MPEMDG AT IR+LE G+V H
Sbjct: 676 AVEAFEGEKP-DLILMDISMPEMDGLSATRAIRNLE-----------------GSVEKDH 717
Query: 1177 VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
PI+A+TA+V+ E C+ GMDDY++KP L +A++
Sbjct: 718 CPIIALTANVMAGDRETCLNAGMDDYLAKPVNKTALLKLIAQW 760
>gi|421590989|ref|ZP_16035913.1| two-component sensor histidine kinase/response regulator hybrid
protein [Rhizobium sp. Pop5]
gi|403703640|gb|EJZ19820.1| two-component sensor histidine kinase/response regulator hybrid
protein [Rhizobium sp. Pop5]
Length = 1021
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 205/655 (31%), Positives = 306/655 (46%), Gaps = 126/655 (19%)
Query: 584 TLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGM 643
T+ G + A + ++++ E+ EL +RAEAAD AKS+FLA +SHEIRTPMNGVLGM
Sbjct: 447 TVSRGQHWVALFTDVTELKSREEELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGM 506
Query: 644 LQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDN 703
++L T LD Q + SG L+++IND+LD +KI++G+++ F + + +++
Sbjct: 507 AELLAKTNLDTRQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVED 566
Query: 704 VLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
V +L SS A +K IEL + + +P VIGD GRFRQI+TNLVGN++KFT+ +GH+FV V
Sbjct: 567 VATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTE-RGHVFVDV 625
Query: 764 HLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME 823
+ T++G
Sbjct: 626 G------------------------------FETIAG----------------------- 632
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
G I + +EDTG+GIP E +F F Q D+S++R + GTG+GL+I+ LV+L GG
Sbjct: 633 --GEIMATIRIEDTGIGIPSEKLASVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGG 690
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
+ SE G GS F+ + F L+PK P +G R LV+DD EV
Sbjct: 691 YLDVDSEWGKGSVFTVNLPFAVAAAR-LEPK-----PLPINVQGARILVVDDN----EVN 740
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
R L + QL+ + LA++ D+ +VL Y +
Sbjct: 741 RRIL-----------TEQLSLWGFDGVAAEGGGTGLAILEAAADLGVTVDAVVLDYHMPD 789
Query: 1004 QRRKGGLEISR---------NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIG 1054
G +++R LP IFL + IS T+++ +G L+ KP R +VL
Sbjct: 790 MN---GADVARRLRADPRFVELPIIFLTSMDISGTEKEFAALNGHAHLM-KPARANVLRN 845
Query: 1055 CF----------QEDPESSKKLQQKRKKPSLGHLLKGK-------QILVVDDNMVNRRVA 1097
Q +LQ + P+ + +LV +DN VN+ V
Sbjct: 846 TVVEVVRARRVKQVSEAEIARLQAEAAAPAPESAPVPQTRAAEFVDVLVAEDNEVNQIVF 905
Query: 1098 EGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE 1157
L+ G V+ G+ AV H MD+ MP M+G +AT IR LE
Sbjct: 906 TQILQGTGLSFLVVNNGQEAVAAWQ-SHTPRIIMMDVSMPVMNGHEATRTIRKLEQ---- 960
Query: 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
G+ VPI+ +TA +++ + C+ GMDDY+SKP E L
Sbjct: 961 ----GQGR----------RVPIIGVTAHALESDRDLCLDAGMDDYMSKPISPELL 1001
>gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium
vinosum DSM 180]
gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium
vinosum DSM 180]
Length = 778
Score = 257 bits (657), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 210/663 (31%), Positives = 305/663 (46%), Gaps = 141/663 (21%)
Query: 576 ASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRT 635
SIG + L F A + RI Q + E+ E + AE A+ AKS FLA +SHEIRT
Sbjct: 228 GSIGTDELATLT-RAFDAMLERIEQRDA---ELREARDAAERANRAKSHFLANMSHEIRT 283
Query: 636 PMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPF 695
PMNG++GM ++L +T+L+AAQ D + +S L+ +IND+LD ++IE+GRLE E + F
Sbjct: 284 PMNGIIGMTELLQETDLNAAQRDCTRVIQDSAAALMRIINDILDMSRIEAGRLELERLDF 343
Query: 696 HLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQD 755
+ ++ L A +KG+E AI + +P + GDPGR RQI+TNLV N+IKFT+
Sbjct: 344 DPRESIERTLEPLREIAQRKGLEFAIELDPELPARLRGDPGRLRQILTNLVSNAIKFTE- 402
Query: 756 KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKM 815
+ +V V LE++ D W
Sbjct: 403 --------------QGRVSVTLDCLERT---------------------DDW-------- 419
Query: 816 LDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISR 875
++ ++ V DTG+G+ E R+F F QAD ST R YGGTG+GL+ISR
Sbjct: 420 ------------VRFVIAVRDTGIGLSTEECSRLFERFSQADVSTRRRYGGTGLGLAISR 467
Query: 876 CLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVS-EFRGLRALVID 934
LVELMGG I S+PG GS F + E P V GL+ LV+
Sbjct: 468 QLVELMGGGIDVESKPGLGSVFRVELVLESSE----------SPPAVDRRLAGLQTLVLV 517
Query: 935 DKSIRAEVTRYHLQRLEMAVHVANSMQLAC-SYLSDTCSTSVLPQLALVLIDKDVWDKEI 993
+ A L+ L M+V S+ A S L+ L L
Sbjct: 518 QEPSLAAQLGGMLEDLGMSVEHQTSLAAAIESALTRAARGQTFDVLLLEHEQLPAPTSPA 577
Query: 994 GLVLHYM------LKQQRRKGGLE----ISRNLPKIFLLATSISETDRDELKSDGIVTLL 1043
G +LH M + + R +GG + LP+I L T + EL++
Sbjct: 578 GSLLHEMSARALAVLRLRARGGAAGDDPVWGRLPEIGLPPTHV------ELQNG------ 625
Query: 1044 TKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKK 1103
LS +I + + +++PSL G ++LV +DN N+RV E L
Sbjct: 626 -----LSAII----RSRGAGGHGEGAKQRPSL-----GLRVLVAEDNPANQRVIEWML-- 669
Query: 1104 HGAIVTCVDC-------GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEIN 1156
T +DC GR+ ++ T D MD QMP MDG++ T ++R LE+ +
Sbjct: 670 -----TALDCEVELHPNGRSLLESFT-ARPADLVLMDCQMPVMDGYETTRRLRKLESALG 723
Query: 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
+ VPI+A+TA + E+ + GMDD++SKPF E L T +
Sbjct: 724 RR------------------VPIIAVTAQAMAGDRERVIAAGMDDHLSKPFTLEALATLL 765
Query: 1217 ARF 1219
R+
Sbjct: 766 TRW 768
>gi|322831385|ref|YP_004211412.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
gi|384256500|ref|YP_005400434.1| hybrid sensory histidine kinase BarA [Rahnella aquatilis HX2]
gi|321166586|gb|ADW72285.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
gi|380752476|gb|AFE56867.1| hybrid sensory histidine kinase BarA [Rahnella aquatilis HX2]
Length = 916
Score = 257 bits (657), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 201/682 (29%), Positives = 314/682 (46%), Gaps = 126/682 (18%)
Query: 552 DPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINR-IAQVENDYHEMME 610
D R+ ++ R + P + + I + ++L +H + + I Q +D E +E
Sbjct: 213 DRIRRGQLDSRVEGNMPGELSMLKNGINSMAMSLTA---YHEEVQQNIDQATSDLRETLE 269
Query: 611 -----------LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L Q DY
Sbjct: 270 QMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLSPTQADY 329
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
QT S L+++INDVLD +K+E+G+L E +PF L ++LD V+ L + A+ KG+EL
Sbjct: 330 LQTIERSANHLLTIINDVLDFSKLEAGKLVLEHIPFSLREMLDEVVILLAHTAHDKGLEL 389
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+ V + VPE V+GDP R +Q++TNL+GN+IKFT+ G+I ++V L
Sbjct: 390 TLNVHNNVPENVLGDPMRMQQVVTNLLGNAIKFTE-TGNIDINVEL-------------- 434
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
+S N++Q ++L V + DTG+
Sbjct: 435 --RSQNNLQ---------------------------------------VELEVQIHDTGI 453
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GI Q ++F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+ GSTF F
Sbjct: 454 GISERQQSQLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFYSQLNRGSTFWF 513
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
VT E + P ++ G R ++ A+ T LQ + + +
Sbjct: 514 HVTLELNENRHITPV------SMNHLEGKRLAYVEANPAAAKATMEILQATPLDITHRTT 567
Query: 960 MQLACSYLSDT--CSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ D CS V P L + + K +G+ H +L LP
Sbjct: 568 LAALPEPWYDIMLCSIPVKPDQVLADYEGKL-QKVLGMTQHLLLA-------------LP 613
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPL-RLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
F + D +ELK G+ L KP+ + +L E S + + K S
Sbjct: 614 SQF-------QVDAEELKRRGVQACLIKPMSSIRLLPLLLHEQQASVRVIGNDEDKTSRL 666
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
L + VDDN N ++ L++ G A+D + + D MD+QM
Sbjct: 667 PLTA----MAVDDNPANLKLIGALLEELVETTVLCHSGEEAID-VARHTDLDIILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P++DG +A+ EI Q+A + P++A+TA + EQ +K
Sbjct: 722 PDIDGIRAS--------EIIHQMARHAKT------------PVVAVTAHSLSGEREQLLK 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
GMDDY+SKP ++ L ++R
Sbjct: 762 LGMDDYLSKPIDESMLKNVLSR 783
>gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
Length = 725
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 189/632 (29%), Positives = 295/632 (46%), Gaps = 111/632 (17%)
Query: 596 NRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAA 655
+ +A++ E+ K +AE A+ KS+FLA +SHEIRTPMNG++GM +L T LD
Sbjct: 171 DTVAKMREYNAELKSAKMQAEQANQKKSEFLANMSHEIRTPMNGIIGMASLLKGTPLDEE 230
Query: 656 QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQK 715
Q ++ + S L+ +IND+LD +KIE+G+LE + V +L ++ ++ LF + +K
Sbjct: 231 QREFIEMLETSSLSLLDIINDILDFSKIEAGKLELDSVELNLFELCKDIEHLFRLRTKEK 290
Query: 716 GIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775
G+E + + +++GD R RQ++ NLVGN++KFTQ G + VS +R +
Sbjct: 291 GLEFECGLDQNLTPLLVGDAPRLRQVMINLVGNAVKFTQ-SGKVSVS------IRQVAEA 343
Query: 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVE 835
D + T T E VE
Sbjct: 344 GDNI---------------------------------------TVTFE----------VE 354
Query: 836 DTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGS 895
DTG+GIP + +F F QAD S SR +GGTG+GL+IS +VELMGGEI S G GS
Sbjct: 355 DTGIGIPADKLKTVFEKFEQADGSMSRNFGGTGLGLAISSQIVELMGGEIEVESREGEGS 414
Query: 896 TFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH 955
F FTVTF + P D F L++DD + +T L L V
Sbjct: 415 RFFFTVTFERAQMPEAMPG------DTLLFADAAMLLVDDSRLNMRITSAQLSNLGCQVS 468
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
+ A +++ T+ LV++DK + + + G + L+++ +
Sbjct: 469 CCVHSEDAEEMIAERIDTA--KPFKLVILDKLMPNSD-GFSIASRLRKR-------FGKR 518
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL--------------IGCFQEDPE 1061
P + ++ + D +L+S I L++P + + L +G
Sbjct: 519 CPSLMMITAAPEVHDNVKLESLNIEGYLSRPYKFNDLRNHLARILRGQQAQLGVVSMSAH 578
Query: 1062 SSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL 1121
+ + + P G +G+ +LVV+D +VN+RV + L + G V + G+ A+D
Sbjct: 579 KADQDAKTANPPESGT-YQGR-VLVVEDTLVNQRVTQAMLVRLGVDVVVAENGQVAIDYC 636
Query: 1122 TPPHN-FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
H+ FD FMD QMP MDG+QA +R G + H PI+
Sbjct: 637 K--HDIFDLIFMDCQMPVMDGYQAARLLRE----------HGYAP----------HTPIV 674
Query: 1181 AMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
A+TA+ E C+K GMDDY++KP +L
Sbjct: 675 ALTANATAQDRENCLKSGMDDYIAKPVRKAEL 706
>gi|15803307|ref|NP_289340.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EDL933]
gi|25308230|pir||G85929 hypothetical protein barA [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
gi|12517258|gb|AAG57899.1|AE005506_7 sensor-regulator, activates OmpR by phophorylation [Escherichia coli
O157:H7 str. EDL933]
Length = 918
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTXTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|417708850|ref|ZP_12357878.1| signal transduction histidine-protein kinase barA [Shigella flexneri
VA-6]
gi|417829043|ref|ZP_12475591.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri J1713]
gi|420321775|ref|ZP_14823600.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
2850-71]
gi|420332830|ref|ZP_14834479.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
K-1770]
gi|332999537|gb|EGK19122.1| signal transduction histidine-protein kinase barA [Shigella flexneri
VA-6]
gi|335574342|gb|EGM60668.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri J1713]
gi|391247082|gb|EIQ06338.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
2850-71]
gi|391248908|gb|EIQ08146.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
K-1770]
Length = 918
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 294/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSIQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------RQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|373954442|ref|ZP_09614402.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
paludis DSM 18603]
gi|373891042|gb|EHQ26939.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
paludis DSM 18603]
Length = 936
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 200/613 (32%), Positives = 301/613 (49%), Gaps = 113/613 (18%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A+ AKS FLAT+SHEIRTPMNGVLGM +L +T L+ Q +Y T NSG+ L+S+I
Sbjct: 412 AEKANQAKSVFLATMSHEIRTPMNGVLGMASLLEETTLNNEQREYVSTIKNSGETLLSVI 471
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
+DVLD +KIESG+L+ + F+L ++ V+ +FS K + G++L + VP +I D
Sbjct: 472 SDVLDFSKIESGKLDLDPHQFNLRQCIEEVMDIFSGKVARIGLDLVYQIGYEVPAHIIAD 531
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R +Q++ NLVGN+IKFT KG V L + S+ D D LE
Sbjct: 532 SLRLKQVLINLVGNAIKFT-SKGE----VFLGVSLLSRTD--DHSLE------------- 571
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
L V+DTG+GIP + R+F F
Sbjct: 572 -----------------------------------LAFEVKDTGIGIPRDKLPRLFKAFS 596
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
Q DSST+R YGG+G+GL+I LV LM G+I S+ G+TF F++ E +++
Sbjct: 597 QIDSSTTRRYGGSGLGLAICERLVHLMEGQITVESQLDLGTTFRFSIKAEESQQD----- 651
Query: 915 WQQYVPDV-SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
+ +VP V + G LV+DD ++ + L++ ++ +A S A + L+
Sbjct: 652 IRLHVPYVLAGHEGKVILVVDDNQTNRKILQVQLEQWKLVPLMAASASEALTLLAKH--- 708
Query: 974 SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
++ LVL D + D + G+ ++K + K +P + L S D +
Sbjct: 709 ----RIDLVLTDMQMPDMD-GIDFAAIIKNKNAK--------MPVVLL----SSRGDEAK 751
Query: 1034 LKSDGIVT-LLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQ---IL 1085
K G+ T +L KP++ V+ Q++PE ++ Q+ L K IL
Sbjct: 752 TKYPGLFTAVLNKPVKQQQLGRVIQTSLQQNPEP--EVHQQSTPVLLTPEFAEKHPLNIL 809
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
V +DN++N+++ L K G T G + LT H FD MD+QMP MDG +AT
Sbjct: 810 VAEDNLINQKLILRILSKLGYEATVAQNGLEVI-ALTELHKFDVILMDIQMPMMDGLEAT 868
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
IR ++I + I+AMTA+ + E C+K GMDDY+SK
Sbjct: 869 QIIR--SSKIEQPF-------------------IIAMTANAMPEDKEDCLKAGMDDYLSK 907
Query: 1206 PFEDEQLYTAVAR 1218
P E TA+++
Sbjct: 908 PIHLESFLTALSK 920
>gi|428316381|ref|YP_007114263.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428240061|gb|AFZ05847.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 2009
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 204/634 (32%), Positives = 306/634 (48%), Gaps = 114/634 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
+ AEAA AKS+FLA +SHEIRTPMN V+GM +L+DTEL A Q D+ +T NSG L+
Sbjct: 1319 RQEAEAASRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELKAQQRDFIETIRNSGDTLL 1378
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+IND+LD +KIESG+LE E P L D ++ + + KA++K IEL + P +
Sbjct: 1379 SIINDILDFSKIESGKLELEKHPLSLRDCIEGAIDQLAVKADEKEIELGYLIHPLTPNFI 1438
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GD R RQI+ NL+ N+IKFT + G + +SV S VD S
Sbjct: 1439 LGDVTRLRQILVNLLNNAIKFT-ETGEVTISVQ-----ASAVD----------------S 1476
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
DK + P E L I+ ++DTG+GIP R+F
Sbjct: 1477 DKTISEPGNLP--------------------ESLYEIQF--AIQDTGIGIPANRLDRLFK 1514
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI-----GFV----------SEP---GT 893
F Q D+ST+R YGGTG+GL+IS+ L E+M G + G+V ++P
Sbjct: 1515 SFSQVDASTTRQYGGTGLGLAISKRLSEMMNGMMWVESSGYVGGTPSPKWQPAKPHRVAM 1574
Query: 894 GSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
GSTF FT+ + +P + +P++S G R L++DD+ ++ + M
Sbjct: 1575 GSTFYFTIVASSVATELSEP--MEMLPELS---GKRLLIVDDQPTNRQILTLQAETWGMQ 1629
Query: 954 VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
A S A ++L D+ T + L + + D GL L + Q +
Sbjct: 1630 SLAAPSAVEALNWL-DSGETFDIAILDMQMPQMD------GLTLASAIHQHPK------C 1676
Query: 1014 RNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQK 1069
LP + L + E L S L+KP++ S +LI Q P KK+QQ+
Sbjct: 1677 HRLPLVLLTSMGYPEAGSSAL-STHFAACLSKPIKQSQLYQILIHVLQAQP---KKVQQQ 1732
Query: 1070 RKKPSLGHLLKGKQ-----ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
+ S+ +K Q IL+ +D++VN++VA L++ G G ++ L
Sbjct: 1733 LPR-SVEDDMKLAQRLPLRILLAEDHLVNQKVALLLLERLGYRADIAANGLEVLEALN-R 1790
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
+D MD+QMPEMDG +A+ +I E A I+AMTA
Sbjct: 1791 QPYDVVLMDVQMPEMDGLEASRRI------CQEWPAHTRPR-------------IIAMTA 1831
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ +Q + C+ GM+DY+SKP + L A+++
Sbjct: 1832 NAMQGDRQVCLDAGMNDYISKPIRVDALIQALSQ 1865
>gi|395225316|ref|ZP_10403842.1| signal transduction histidine kinase [Thiovulum sp. ES]
gi|394446490|gb|EJF07312.1| signal transduction histidine kinase [Thiovulum sp. ES]
Length = 1181
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 187/613 (30%), Positives = 302/613 (49%), Gaps = 112/613 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K +AE A AKS+FLA +SHEIRTPMNG++GM + ++T+L+ Q +Y + S K L+
Sbjct: 479 KEKAEEATKAKSEFLANMSHEIRTPMNGIIGMSHLTLETDLNREQRNYIERIDYSAKSLL 538
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+IND+LD +KIE+G+L+ EF+ F + ++++ V++L KA +K +EL + R+ ++
Sbjct: 539 GIINDILDFSKIEAGKLDIEFIEFDMFEMINGVINLIDFKAQEKNLELIVSYDRRICQIY 598
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GD R QI+ NL+GN+IKFT+ +G I++ + +++ + +VKD
Sbjct: 599 DGDSLRISQILINLLGNAIKFTE-QGEIYLKIERKENL-FQFEVKD-------------- 642
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+G + T EQL R +F+
Sbjct: 643 -------TGIGM-----------------TPEQLKR---------------------LFS 657
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD ST+R YGGTG+GL+IS+ LVELMGG+I SE G GS+F F + E +
Sbjct: 658 AFSQADGSTTRKYGGTGLGLTISKQLVELMGGKIWVESEFGKGSSFIFQIPLKEITNCN- 716
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
++ F + L++DD + +V L++ +V + +S D
Sbjct: 717 --------KKITLFENKKVLIVDDNNTWHDVLEELLKK--YSVDIEHSFDGV-----DAI 761
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
S LVL+D W+ +G+ +K+ +++ +EI PKI ++ +
Sbjct: 762 SKVKKESFDLVLMD---WNM-VGIDGIETVKRIQKE--VEIQ---PKIVMVTAYRQDLIE 812
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQE---DPESSKKLQQKRKKPSLGHLLKGKQILVVD 1088
K GI L KP+ S L Q + E SK++ +K + L+G IL+ +
Sbjct: 813 KTAKETGIKHFLHKPINPSFLNDILQNIFLNREISKEINKKGNSRAEISKLRGSNILLAE 872
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP-PHNFDACFMDLQMPEMDGFQATWQ 1147
DN NR + G LK G + G V K P ++ F DLQMP MDGF AT
Sbjct: 873 DNQTNREIIIGLLKNSGINMDIATNGAELVQKFRENPDKYELIFTDLQMPIMDGFGATKA 932
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR +++EI PI+A+TA+ +++ E+ K M+++++KP
Sbjct: 933 IREVDSEI----------------------PIIALTANAMKSDIEKTKKAKMNEHLNKPI 970
Query: 1208 EDEQLYTAVARFF 1220
E E+ Y + ++
Sbjct: 971 EVEKFYGTLLKYL 983
>gi|417713878|ref|ZP_12362841.1| signal transduction histidine-protein kinase barA [Shigella flexneri
K-272]
gi|417718504|ref|ZP_12367398.1| signal transduction histidine-protein kinase barA [Shigella flexneri
K-227]
gi|333001143|gb|EGK20713.1| signal transduction histidine-protein kinase barA [Shigella flexneri
K-272]
gi|333015782|gb|EGK35119.1| signal transduction histidine-protein kinase barA [Shigella flexneri
K-227]
Length = 918
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 294/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSIQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------RQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|24114070|ref|NP_708580.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str. 301]
gi|30064131|ref|NP_838302.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str.
2457T]
gi|384544360|ref|YP_005728423.1| Signal transduction histidine-protein kinase barA [Shigella flexneri
2002017]
gi|415857793|ref|ZP_11532405.1| signal transduction histidine-protein kinase barA [Shigella flexneri
2a str. 2457T]
gi|417703812|ref|ZP_12352916.1| signal transduction histidine-protein kinase barA [Shigella flexneri
K-218]
gi|417724405|ref|ZP_12373205.1| signal transduction histidine-protein kinase barA [Shigella flexneri
K-304]
gi|417729685|ref|ZP_12378378.1| signal transduction histidine-protein kinase barA [Shigella flexneri
K-671]
gi|417735268|ref|ZP_12383915.1| signal transduction histidine-protein kinase barA [Shigella flexneri
2747-71]
gi|417739652|ref|ZP_12388227.1| signal transduction histidine-protein kinase barA [Shigella flexneri
4343-70]
gi|417744635|ref|ZP_12393159.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 2930-71]
gi|418258049|ref|ZP_12881450.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 6603-63]
gi|420343131|ref|ZP_14844598.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
K-404]
gi|420374967|ref|ZP_14874891.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
1235-66]
gi|28558062|sp|P59342.1|BARA_SHIFL RecName: Full=Signal transduction histidine-protein kinase BarA
gi|24053197|gb|AAN44287.1| sensor-regulator [Shigella flexneri 2a str. 301]
gi|30042387|gb|AAP18112.1| sensor-regulator [Shigella flexneri 2a str. 2457T]
gi|281602146|gb|ADA75130.1| Signal transduction histidine-protein kinase barA [Shigella flexneri
2002017]
gi|313647846|gb|EFS12292.1| signal transduction histidine-protein kinase barA [Shigella flexneri
2a str. 2457T]
gi|332753502|gb|EGJ83882.1| signal transduction histidine-protein kinase barA [Shigella flexneri
4343-70]
gi|332753638|gb|EGJ84017.1| signal transduction histidine-protein kinase barA [Shigella flexneri
K-671]
gi|332754699|gb|EGJ85065.1| signal transduction histidine-protein kinase barA [Shigella flexneri
2747-71]
gi|332765737|gb|EGJ95950.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 2930-71]
gi|333000195|gb|EGK19778.1| signal transduction histidine-protein kinase barA [Shigella flexneri
K-218]
gi|333015336|gb|EGK34676.1| signal transduction histidine-protein kinase barA [Shigella flexneri
K-304]
gi|391264341|gb|EIQ23334.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
K-404]
gi|391315002|gb|EIQ72537.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
1235-66]
gi|397895743|gb|EJL12168.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 6603-63]
Length = 918
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 294/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSIQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------RQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|358378102|gb|EHK15785.1| histidine kinase NIK-1 [Trichoderma virens Gv29-8]
Length = 1289
Score = 257 bits (656), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 199/623 (31%), Positives = 298/623 (47%), Gaps = 104/623 (16%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
I+ + + + + AE A+ KS+FLA +SHEIRTPMNG++GM Q+ +DT+L Q
Sbjct: 686 ISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTQYQR 745
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
+ ++ L+++I+D+LD +KIE+ R+ E +P+ L + N L + KAN+K +
Sbjct: 746 EMLNIVNDLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKTLAVKANEKFL 805
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
+L V VP+ VIGD R RQII NLVGN+IKFT+ H VS+
Sbjct: 806 DLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFTE---HGEVSL-------------- 848
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++Q + DK + P G + VEDT
Sbjct: 849 --------TIQEQEDKRHVA----P-----------------------GEYAIEFIVEDT 873
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI + IF F QAD S +R +GGTG+GLSIS+ V LMGG++ SE G GS F
Sbjct: 874 GIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRFVNLMGGDLWVNSEVGKGSEF 933
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH-- 955
FT + ++ + QQ P +RG + L + DKS T E+ +H
Sbjct: 934 HFTCRVKLADVHA-ESVQQQLKP----YRGHQVLFV-DKSQSNAATHIGEMLEEIGLHPV 987
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
V NS + S L+ LP A+++ D RR ++ +
Sbjct: 988 VVNSEK--SSALTRLKEGGALPYDAIIVDSIDT---------------ARRLRAVDDFKY 1030
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSL 1075
LP I LLA + + + L GI + +T P +L L E+ R PSL
Sbjct: 1031 LP-IVLLAPVVHVSLKSCLDL-GITSYMTMPCKLIDLSNGMIPALEN-------RATPSL 1081
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
+ K +IL+ +DN VN+++A L+K+ +VT V G AV+ + FD MD+Q
Sbjct: 1082 ADVTKSFEILLAEDNTVNQKLAVKILEKYHHVVTVVGNGWEAVEAV-KQKKFDVILMDVQ 1140
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP M GF+AT +IR E +G PI+A+TA + E+C+
Sbjct: 1141 MPIMGGFEATGKIREYER-----------------GMGTHRTPIIALTAHAMMGDREKCI 1183
Query: 1196 KCGMDDYVSKPFEDEQLYTAVAR 1218
+ MD+Y+SKP + QL + +
Sbjct: 1184 QAQMDEYLSKPLQQNQLIQTILK 1206
>gi|344344646|ref|ZP_08775507.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum 984]
gi|343803810|gb|EGV21715.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum 984]
Length = 1400
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 192/624 (30%), Positives = 300/624 (48%), Gaps = 116/624 (18%)
Query: 611 LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDL 670
L RA+ A AKS+FL+ +SHEIRTP+NGV+GML +L ++ L A Q Y + A +SG+ L
Sbjct: 747 LANRAKMASRAKSRFLSNMSHEIRTPLNGVIGMLGLLHESPLSADQQRYLEIAQHSGEGL 806
Query: 671 ISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV 730
+ +IND+LD +K+E+G+LE E + F L ++LD+ ++ + A++K +EL + +P
Sbjct: 807 LKIINDILDFSKVEAGKLELERIDFDLGELLDDFVATMALHAHEKTLELTCTAAPDIPTA 866
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD----DVRSKVDVKDKVLEKSLNS 786
+ GDPGR QI+TNLVGN+IKFT+ G + V L D VR ++ V+D
Sbjct: 867 LRGDPGRVLQILTNLVGNAIKFTE-HGEVAVRATLLDCDAHQVRLRLAVRD--------- 916
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
T G P R + + F +D +NT
Sbjct: 917 ----------TGIGIPRDKRERLFHGFSQVDPSNT------------------------- 941
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GL+I++ LVELMGGE+G S G GS F + F
Sbjct: 942 ---------------RRYGGTGLGLAITKQLVELMGGELGLESTLGQGSIFWCDLPFAR- 985
Query: 907 ERNSLDPKWQQYVPDVS-EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
+R P+ +Q+ P S RG R LV+DD E+ L + V A A
Sbjct: 986 QRG---PEAEQHRPQPSARLRGARVLVVDDNRHNRELIAAQLSDWGLTVAEAGDGDQALE 1042
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
+L + + + LID ++ D + GL L ++ + G + + + A
Sbjct: 1043 HLHEGVAQE--HPFTIALIDVNMPDMD-GLTLGEAIRAEPTLAGTAL------VMMTALG 1093
Query: 1026 IS-ETDRDELKSDGIVTLLTKPLRLSVLIGCFQ-------EDPESSKKLQQKRKKPSLGH 1077
I+ E +R + G+ LTKP+R L+ + + P Q+ + P+
Sbjct: 1094 IAREAERCARHALGLQ--LTKPMRQRELLATLEQTLTRPADQPHPVASPTQRARHPA--- 1148
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
++L+ DDN+ N++VA G L G CV GR ++ L H +D +D+QMP
Sbjct: 1149 -----RLLLADDNLTNQQVALGILGHLGFDADCVSNGRQVLEALEARH-YDLLLLDVQMP 1202
Query: 1138 EMDGFQATWQIRH-LENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
+DG + T IR + +N I PI+AMTA ++ E+C+
Sbjct: 1203 LLDGLETTRHIRDPAQGLLNRDI------------------PIIAMTAHALEEDRERCLH 1244
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
GM+DY++KP + + L A+ ++
Sbjct: 1245 AGMNDYLAKPIDRKALAAALEQWL 1268
>gi|300931244|ref|ZP_07146584.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 187-1]
gi|300460898|gb|EFK24391.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 187-1]
Length = 918
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 294/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P+
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPATD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPPNLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|146312879|ref|YP_001177953.1| hybrid sensory histidine kinase BarA [Enterobacter sp. 638]
gi|145319755|gb|ABP61902.1| Hpt sensor hybrid histidine kinase [Enterobacter sp. 638]
Length = 918
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 189/627 (30%), Positives = 304/627 (48%), Gaps = 116/627 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + +EL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD +++L + ++ KG+
Sbjct: 329 DHLHTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEIVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK ++ N K+ ++ V + DT
Sbjct: 431 VLVEK-------------------------RAISNNKL-------------QIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ L++ MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLLKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F ++ L+P P RG+R ++ + A+ T + V
Sbjct: 513 WFHISL------DLNPNVVTDGPMTHCLRGMRLAYVEPNAAAAQST----------LDVL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
++ L Y S T S AL + D+ I + L Q+ + L + ++
Sbjct: 557 STTPLEVIY-SPTFS-------ALAVDHYDILLMGIPVTFTGELTMQQER--LAKAASMT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQE----DPESSKKLQQKRKK 1072
LLA ++ + +ELK+DG L KPL + L+ E + + K
Sbjct: 607 DYLLLALPCHAQLNAEELKNDGAAACLLKPLTATRLLPALTEYCRINHHALPVAHDDHKL 666
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
P ++ VDDN N ++ L+ V G AV+ FD M
Sbjct: 667 P--------MSVMAVDDNPANLKLIGVLLEDQVQHVELCSSGAQAVEH-AKQMQFDLILM 717
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP+MDG +A IR L ++ P++A+TA + E
Sbjct: 718 DIQMPDMDGIRACELIRQLPHQ--------------------QQTPVIAVTAHAMAGQKE 757
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ + GM+DY++KP ++E+L++ + R+
Sbjct: 758 KLLSAGMNDYLAKPIDEEKLHSLLLRY 784
>gi|406835512|ref|ZP_11095106.1| PAS domain S-box [Schlesneria paludicola DSM 18645]
Length = 925
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 185/600 (30%), Positives = 294/600 (49%), Gaps = 98/600 (16%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
+KS+FLA +SHEIRTPMNGV+GM ++++DT+L Q +Y Q S L+++IND+LD
Sbjct: 268 SKSEFLANMSHEIRTPMNGVIGMTELVLDTDLTTEQREYVQAVKTSADALLTVINDILDF 327
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIE+G+L+ + + L +++ N L + +A++KG+EL ++D VP++ + DP R RQ
Sbjct: 328 SKIEAGKLDLDPIQLDLREMISNTLRPLAMRAHEKGLELTCDIADEVPDLHMADPVRLRQ 387
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
I+ NL+GN++KFT +G + ++V +E LN V +T G
Sbjct: 388 ILINLIGNAVKFTA-QGEVGLTV---------------TVESHLNDAAVLHFDVSDTGIG 431
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
P K +E F D ST
Sbjct: 432 IPPEKLAKVFEPFSQADG----------------------------------------ST 451
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
+R +GGTG+GL+IS LVE+MGG + S G GS F FT + G ++ K +P
Sbjct: 452 TRRFGGTGLGLTISAQLVEMMGGRVWIESHVGRGSHFHFTASL--GRAPAVPSK---NLP 506
Query: 921 DVS-EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQL 979
S GL ALV+DD + + + L++ M + +S A S +S T+ + Q
Sbjct: 507 CKSGNLNGLSALVVDDNATNRRILQEMLKKWGMQPTLVDSGSQALSAISHAADTNSMFQ- 565
Query: 980 ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGI 1039
L+L+D ++ G L +KQ R S+ + + +L + D + GI
Sbjct: 566 -LILVDSEMPGMN-GFALSEQIKQAR-----ACSKAI--VMMLTSDNQRGDAARCRDLGI 616
Query: 1040 VTLLTKP-----LRLSVLIGCFQEDPESSK--KLQQKRKKPSLGHLLKGKQILVVDDNMV 1092
+ L KP L S+LI +P S + ++ ++ QIL+ DDN++
Sbjct: 617 KSHLVKPIMAADLLRSILIAMELAEPPSVDVFPISTTQESDPETTRIRPLQILLADDNLI 676
Query: 1093 NRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLE 1152
N++VA L++ G V + G V ++ +FD MD+QMP M GF+AT +IR +E
Sbjct: 677 NQKVAVRMLERQGHTVVVANDG-TEVLQILAMQSFDVILMDVQMPVMGGFEATARIRAIE 735
Query: 1153 NEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
E H+PI+AMTA ++ E+C+ GM+DY+SKP + +L
Sbjct: 736 EETGA------------------HLPIIAMTAHAMKGDRERCLGAGMNDYLSKPIKASEL 777
>gi|312964948|ref|ZP_07779188.1| signal transduction histidine-protein kinase barA [Escherichia coli
2362-75]
gi|419030280|ref|ZP_13577436.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2C]
gi|419040966|ref|ZP_13587988.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2E]
gi|312290504|gb|EFR18384.1| signal transduction histidine-protein kinase barA [Escherichia coli
2362-75]
gi|377875657|gb|EHU40266.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2C]
gi|377888068|gb|EHU52540.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2E]
Length = 918
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|215488103|ref|YP_002330534.1| hybrid sensory histidine kinase BarA [Escherichia coli O127:H6 str.
E2348/69]
gi|417757042|ref|ZP_12405113.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2B]
gi|418998132|ref|ZP_13545722.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1A]
gi|419003361|ref|ZP_13550880.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1B]
gi|419008920|ref|ZP_13556344.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1C]
gi|419014706|ref|ZP_13562049.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC1D]
gi|419019732|ref|ZP_13567036.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1E]
gi|419025124|ref|ZP_13572347.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC2A]
gi|419035929|ref|ZP_13583012.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2D]
gi|215266175|emb|CAS10601.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O127:H6 str. E2348/69]
gi|377842082|gb|EHU07137.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1A]
gi|377842275|gb|EHU07329.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1C]
gi|377845853|gb|EHU10872.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1B]
gi|377855388|gb|EHU20259.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC1D]
gi|377858892|gb|EHU23730.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1E]
gi|377862482|gb|EHU27294.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC2A]
gi|377872420|gb|EHU37066.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2B]
gi|377878447|gb|EHU43034.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2D]
Length = 918
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|417221179|ref|ZP_12024619.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.154]
gi|386200981|gb|EIH99971.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.154]
Length = 918
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMSGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 1817
Score = 256 bits (655), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 204/641 (31%), Positives = 305/641 (47%), Gaps = 124/641 (19%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AEAA+ AKS+FLA +SHEIRTPMN V+GM +L+DTEL + Q D+ +T SG L+
Sbjct: 1130 KRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELTSQQRDFVETVLTSGDALL 1189
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+IND+LD +KIESG+LE E PF + ++ V+ L ++KA QK IELA + +VP +
Sbjct: 1190 SIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQVPMQI 1249
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GD R RQI+TNL+ N+IKFT + G + VS VRS+ K
Sbjct: 1250 AGDLTRLRQILTNLLNNAIKFTPE-GEVVVS------VRSQPSPNQK------------- 1289
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
N N E ++ T++DTG+GI E +F
Sbjct: 1290 --------------------------NKNCCE------IIFTIKDTGIGIAPETMDLLFQ 1317
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGE--------IGFVSEPG----------- 892
PF+QAD+S +R YGGTG+GL IS+ L E+MGG +G PG
Sbjct: 1318 PFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRGCVGGNPPPGWQTKNSISSAS 1377
Query: 893 --TGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRL 950
TGSTF F++T L+ + + G R L++DD ++ R +
Sbjct: 1378 VATGSTFYFSMTVPVVAHADLETP----ITSPVQLSGKRLLIVDDNPTNRQILRLQAEPW 1433
Query: 951 EMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGG 1009
+M + A S A + + +A + DV E+ GL L ++Q+
Sbjct: 1434 QMETYTAPSGAEALALIDQG--------MAFDIAILDVQMPEMDGLTLARQIRQRPS--- 1482
Query: 1010 LEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKK 1065
++LP + L + +TD +++ L KP++ S VL P +
Sbjct: 1483 ---YQHLPLVILTSWGQPDTDLSDIE---FAACLNKPIKQSQLYDVLASTLGNQPIRASV 1536
Query: 1066 LQQKRKKPSLGHLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
+ + + + L + +IL+ +D +VN++VA LKK G V G ++ L
Sbjct: 1537 VPDRSTE--INSCLAQQIPLRILLAEDIVVNQKVALLILKKMGYRADVVANGLEVLEALQ 1594
Query: 1123 PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAM 1182
+D MD+ MPEMDG +A+ +I Q S S I+AM
Sbjct: 1595 RQF-YDVVLMDVNMPEMDGLKAS--------QIICQTWSPSSRPY-----------IIAM 1634
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
TA+ ++ E C+ GMD Y+SKP + E+L A+ + SG
Sbjct: 1635 TANAMRGDREACLAAGMDHYISKPLQLEELAKALGKCHPSG 1675
>gi|416279324|ref|ZP_11644844.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905]
gi|320182398|gb|EFW57295.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905]
Length = 918
Score = 256 bits (655), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|419233820|ref|ZP_13776592.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9B]
gi|378075627|gb|EHW37641.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9B]
Length = 918
Score = 256 bits (655), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|194434684|ref|ZP_03066938.1| sensor histidine kinase/response regulator BarA [Shigella dysenteriae
1012]
gi|417673505|ref|ZP_12322956.1| signal transduction histidine-protein kinase barA [Shigella
dysenteriae 155-74]
gi|194417081|gb|EDX33196.1| sensor histidine kinase/response regulator BarA [Shigella dysenteriae
1012]
gi|332089100|gb|EGI94210.1| signal transduction histidine-protein kinase barA [Shigella
dysenteriae 155-74]
Length = 918
Score = 256 bits (655), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|421775443|ref|ZP_16212052.1| hybrid sensory histidine kinase BarA [Escherichia coli AD30]
gi|408459329|gb|EKJ83111.1| hybrid sensory histidine kinase BarA [Escherichia coli AD30]
Length = 918
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLTGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|442596326|ref|ZP_21014139.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|441655338|emb|CCQ00052.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
Length = 918
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|387608423|ref|YP_006097279.1| two-component sensor kinase/response regulator [Escherichia coli 042]
gi|284922723|emb|CBG35811.1| two-component sensor kinase/response regulator [Escherichia coli 042]
Length = 918
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|82545085|ref|YP_409032.1| hybrid sensory histidine kinase BarA [Shigella boydii Sb227]
gi|81246496|gb|ABB67204.1| sensor-regulator [Shigella boydii Sb227]
Length = 918
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|260869464|ref|YP_003235866.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O111:H- str. 11128]
gi|417200225|ref|ZP_12017462.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4.0522]
gi|417211723|ref|ZP_12022022.1| signal transduction histidine-protein kinase BarA [Escherichia coli
JB1-95]
gi|417593117|ref|ZP_12243810.1| signal transduction histidine-protein kinase barA [Escherichia coli
2534-86]
gi|419198371|ref|ZP_13741698.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC8A]
gi|419204688|ref|ZP_13747864.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8B]
gi|419886291|ref|ZP_14406932.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9570]
gi|419892903|ref|ZP_14412910.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9574]
gi|420092261|ref|ZP_14603975.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9602]
gi|420097786|ref|ZP_14609078.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9634]
gi|424773085|ref|ZP_18200166.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257765820|dbj|BAI37315.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O111:H- str. 11128]
gi|345335209|gb|EGW67648.1| signal transduction histidine-protein kinase barA [Escherichia coli
2534-86]
gi|378045569|gb|EHW07963.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC8A]
gi|378046836|gb|EHW09209.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8B]
gi|386188028|gb|EIH76841.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4.0522]
gi|386195297|gb|EIH89533.1| signal transduction histidine-protein kinase BarA [Escherichia coli
JB1-95]
gi|388365496|gb|EIL29279.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9570]
gi|388369064|gb|EIL32684.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9574]
gi|394380563|gb|EJE58305.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9602]
gi|394383481|gb|EJE61081.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9634]
gi|421937334|gb|EKT94951.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 918
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|432450921|ref|ZP_19693180.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE193]
gi|433034604|ref|ZP_20222308.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE112]
gi|430978655|gb|ELC95459.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE193]
gi|431548883|gb|ELI22975.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE112]
Length = 918
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|428997148|ref|ZP_19065746.1| signal transduction histidine-protein kinase BarA [Escherichia coli
94.0618]
gi|427244665|gb|EKW11978.1| signal transduction histidine-protein kinase BarA [Escherichia coli
94.0618]
Length = 918
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|407790135|ref|ZP_11137231.1| sensory box histidine kinase/response regulator [Gallaecimonas
xiamenensis 3-C-1]
gi|407205150|gb|EKE75126.1| sensory box histidine kinase/response regulator [Gallaecimonas
xiamenensis 3-C-1]
Length = 1260
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 202/619 (32%), Positives = 296/619 (47%), Gaps = 119/619 (19%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
E K A+ A AKS FLA +SHEIRTPMN +LG Q+ E D A Y + K
Sbjct: 555 EAKEAADEASRAKSDFLANMSHEIRTPMNAILGFTQLAQ--EQDGAS-PYLGKIQQASKT 611
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+ ++ND+LD +KIE+G+L E V FHL D L N+ +F+ KA +K +EL + P
Sbjct: 612 LLRILNDILDFSKIEAGKLSIEKVDFHLEDTLTNLRDIFADKAVEKQVELVFNLLPDCPS 671
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
+ GDP R QI+ NL+ N++KFT+ KG + VSV QH
Sbjct: 672 RLHGDPHRLSQILMNLISNALKFTE-KGEVVVSVQ-----------------------QH 707
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
+ W F +V DTG+G+ E ++
Sbjct: 708 QP-----------------GWLQF-------------------SVRDTGIGMTGEQVGKL 731
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF-TEGER 908
F F QADSST+R +GGTG+GL+I + L LMGG+I SE G GS F+F++ EGE
Sbjct: 732 FQAFSQADSSTTRRFGGTGLGLAICQRLCLLMGGDIEVRSELGRGSLFTFSLPLVAEGEE 791
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
S ++Q V+ +G +ALV+DD + V L+ L A + L
Sbjct: 792 GS----YRQ----VAALQGCQALVVDDNETQLTV----LEGLMSAYGFSVRSALGGEQAL 839
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
+ C + +P+L +V D GL L ++Q + PK L+ ++ S
Sbjct: 840 EMCRQA-MPELLVVDWQMPGMD---GLALAQAVQQLPEQ---------PKALLMVSAFS- 885
Query: 1029 TDR--DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL----LKGK 1082
D+ E + GI +L KP+ S L+ E +S R+ P L L GK
Sbjct: 886 NDKLVKEALALGIREVLLKPVSPSTLLDAVCEALGASSGRLPVRRAPDGQGLRYPALAGK 945
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
++L+VDDN +NR VA+ L K G V G+ A+DKL D MD QMP MDGF
Sbjct: 946 KVLLVDDNDLNREVAQSFLVKAGVQVLLAKDGQDALDKLA-GRGADLVLMDCQMPIMDGF 1004
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQCMKCGMDD 1201
+AT ++R W +P++AMTA+V++ E+C+ GM+D
Sbjct: 1005 EATRRLRQQPQ---------------------WQDLPVIAMTANVMEGDKERCLAAGMND 1043
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
+++KP + ++ +AR+
Sbjct: 1044 HIAKPLDVPLMFEVIARWL 1062
>gi|422970083|ref|ZP_16973876.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA124]
gi|371600461|gb|EHN89233.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA124]
Length = 918
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|432628412|ref|ZP_19864384.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE77]
gi|431161705|gb|ELE62174.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE77]
Length = 918
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|433199479|ref|ZP_20383371.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE94]
gi|431719601|gb|ELJ83655.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE94]
Length = 918
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|418268018|ref|ZP_12886896.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella sonnei str. Moseley]
gi|397897575|gb|EJL13981.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella sonnei str. Moseley]
Length = 920
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|420348672|ref|ZP_14850054.1| signal transduction histidine-protein kinase BarA [Shigella boydii
965-58]
gi|391267713|gb|EIQ26644.1| signal transduction histidine-protein kinase BarA [Shigella boydii
965-58]
Length = 918
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|415818471|ref|ZP_11508193.1| signal transduction histidine-protein kinase barA [Escherichia coli
OK1180]
gi|323180217|gb|EFZ65769.1| signal transduction histidine-protein kinase barA [Escherichia coli
OK1180]
Length = 918
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|416275346|ref|ZP_11643934.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC
74-1112]
gi|320173230|gb|EFW48440.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC
74-1112]
Length = 918
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|15832900|ref|NP_311673.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
Sakai]
gi|16130693|ref|NP_417266.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. MG1655]
gi|26249187|ref|NP_755227.1| hybrid sensory histidine kinase BarA [Escherichia coli CFT073]
gi|74313358|ref|YP_311777.1| hybrid sensory histidine kinase BarA [Shigella sonnei Ss046]
gi|82778168|ref|YP_404517.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae Sd197]
gi|157159173|ref|YP_001464108.1| hybrid sensory histidine kinase BarA [Escherichia coli E24377A]
gi|157162240|ref|YP_001459558.1| hybrid sensory histidine kinase BarA [Escherichia coli HS]
gi|168750997|ref|ZP_02776019.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4113]
gi|168758477|ref|ZP_02783484.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4401]
gi|168764499|ref|ZP_02789506.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4501]
gi|168766754|ref|ZP_02791761.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4486]
gi|168777593|ref|ZP_02802600.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4196]
gi|168778774|ref|ZP_02803781.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4076]
gi|168788044|ref|ZP_02813051.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC869]
gi|168802533|ref|ZP_02827540.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC508]
gi|170018968|ref|YP_001723922.1| hybrid sensory histidine kinase BarA [Escherichia coli ATCC 8739]
gi|170082357|ref|YP_001731677.1| hybrid sensory histidine kinase BarA [Escherichia coli str. K-12
substr. DH10B]
gi|170680902|ref|YP_001744948.1| hybrid sensory histidine kinase BarA [Escherichia coli SMS-3-5]
gi|187732711|ref|YP_001881473.1| hybrid sensory histidine kinase BarA [Shigella boydii CDC 3083-94]
gi|188492553|ref|ZP_02999823.1| sensor histidine kinase/response regulator BarA [Escherichia coli
53638]
gi|191168547|ref|ZP_03030332.1| sensor histidine kinase/response regulator BarA [Escherichia coli
B7A]
gi|193071118|ref|ZP_03052043.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E110019]
gi|194426308|ref|ZP_03058863.1| sensor histidine kinase/response regulator BarA [Escherichia coli
B171]
gi|194439650|ref|ZP_03071721.1| sensor histidine kinase/response regulator BarA [Escherichia coli
101-1]
gi|195936388|ref|ZP_03081770.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EC4024]
gi|208805653|ref|ZP_03247990.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4206]
gi|208814172|ref|ZP_03255501.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4045]
gi|208820939|ref|ZP_03261259.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4042]
gi|209398921|ref|YP_002272251.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EC4115]
gi|209920235|ref|YP_002294319.1| hybrid sensory histidine kinase BarA [Escherichia coli SE11]
gi|217327442|ref|ZP_03443525.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. TW14588]
gi|218555337|ref|YP_002388250.1| hybrid sensory histidine kinase BarA [Escherichia coli IAI1]
gi|218706282|ref|YP_002413801.1| hybrid sensory histidine kinase BarA [Escherichia coli UMN026]
gi|227888324|ref|ZP_04006129.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
gi|238901924|ref|YP_002927720.1| hybrid sensory histidine kinase BarA [Escherichia coli BW2952]
gi|254794728|ref|YP_003079565.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
TW14359]
gi|260845432|ref|YP_003223210.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O103:H2 str. 12009]
gi|260856896|ref|YP_003230787.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
11368]
gi|261226085|ref|ZP_05940366.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O157:H7 str. FRIK2000]
gi|261256660|ref|ZP_05949193.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O157:H7 str. FRIK966]
gi|291284115|ref|YP_003500933.1| signal transduction histidine-protein kinase barA [Escherichia coli
O55:H7 str. CB9615]
gi|293406278|ref|ZP_06650204.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
gi|293412134|ref|ZP_06654857.1| signal transduction histidine-protein kinase barA [Escherichia coli
B354]
gi|293416033|ref|ZP_06658673.1| two-component system [Escherichia coli B185]
gi|293449112|ref|ZP_06663533.1| two-component system [Escherichia coli B088]
gi|298382015|ref|ZP_06991612.1| two-component system [Escherichia coli FVEC1302]
gi|300815797|ref|ZP_07096021.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 107-1]
gi|300820572|ref|ZP_07100723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 119-7]
gi|300898160|ref|ZP_07116522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 198-1]
gi|300906689|ref|ZP_07124377.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 84-1]
gi|300923241|ref|ZP_07139295.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 182-1]
gi|300950514|ref|ZP_07164424.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 116-1]
gi|300958100|ref|ZP_07170260.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 175-1]
gi|300976048|ref|ZP_07173263.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 45-1]
gi|301026289|ref|ZP_07189744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 196-1]
gi|301027557|ref|ZP_07190890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 69-1]
gi|301049457|ref|ZP_07196415.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 185-1]
gi|301304554|ref|ZP_07210664.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 124-1]
gi|301325726|ref|ZP_07219183.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 78-1]
gi|306812334|ref|ZP_07446532.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
gi|307312785|ref|ZP_07592415.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
gi|309786099|ref|ZP_07680728.1| signal transduction histidine-protein kinase barA [Shigella
dysenteriae 1617]
gi|309795252|ref|ZP_07689671.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 145-7]
gi|312972998|ref|ZP_07787171.1| signal transduction histidine-protein kinase barA [Escherichia coli
1827-70]
gi|331664346|ref|ZP_08365252.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA143]
gi|331669520|ref|ZP_08370366.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA271]
gi|331674279|ref|ZP_08375039.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA280]
gi|331678763|ref|ZP_08379437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H591]
gi|331684406|ref|ZP_08384998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H299]
gi|332280547|ref|ZP_08392960.1| hybrid sensory histidine kinase in two-component system response
regulatory system with UvrY [Shigella sp. D9]
gi|383179949|ref|YP_005457954.1| hybrid sensory histidine kinase BarA [Shigella sonnei 53G]
gi|386281827|ref|ZP_10059486.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
4_1_40B]
gi|386594474|ref|YP_006090874.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
gi|386615508|ref|YP_006135174.1| signal transduction histidine-protein kinase BarA [Escherichia coli
UMNK88]
gi|386625503|ref|YP_006145231.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O7:K1 str. CE10]
gi|386630521|ref|YP_006150241.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone D
i2']
gi|386635441|ref|YP_006155160.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone D
i14']
gi|386640266|ref|YP_006107064.1| sensor-regulator [Escherichia coli ABU 83972]
gi|386706046|ref|YP_006169893.1| Signal transduction histidine-protein kinase barA [Escherichia coli
P12b]
gi|387508142|ref|YP_006160398.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
RM12579]
gi|387613408|ref|YP_006116524.1| two-component sensor kinase/response regulator [Escherichia coli ETEC
H10407]
gi|387622469|ref|YP_006130097.1| signal transduction histidine-protein kinase [Escherichia coli DH1]
gi|387883966|ref|YP_006314268.1| hybrid sensory histidine kinase BarA [Escherichia coli Xuzhou21]
gi|388478802|ref|YP_490994.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. W3110]
gi|404376095|ref|ZP_10981271.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
1_1_43]
gi|407470660|ref|YP_006782897.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407480679|ref|YP_006777828.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2011C-3493]
gi|410481245|ref|YP_006768791.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415779156|ref|ZP_11489928.1| signal transduction histidine-protein kinase barA [Escherichia coli
3431]
gi|415786603|ref|ZP_11493659.1| signal transduction histidine-protein kinase barA [Escherichia coli
EPECa14]
gi|415802723|ref|ZP_11500083.1| signal transduction histidine-protein kinase barA [Escherichia coli
E128010]
gi|415830226|ref|ZP_11516128.1| signal transduction histidine-protein kinase barA [Escherichia coli
OK1357]
gi|415839704|ref|ZP_11521446.1| signal transduction histidine-protein kinase barA [Escherichia coli
RN587/1]
gi|415845677|ref|ZP_11525175.1| signal transduction histidine-protein kinase barA [Shigella sonnei
53G]
gi|415862006|ref|ZP_11535538.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 85-1]
gi|415875153|ref|ZP_11541952.1| sensor protein GacS [Escherichia coli MS 79-10]
gi|416314607|ref|ZP_11658842.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
1044]
gi|416321939|ref|ZP_11663787.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EC1212]
gi|416327678|ref|ZP_11667598.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
1125]
gi|416340193|ref|ZP_11675208.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B]
gi|416776895|ref|ZP_11874929.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
G5101]
gi|416788355|ref|ZP_11879854.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
493-89]
gi|416800342|ref|ZP_11884766.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str. H
2687]
gi|416821567|ref|ZP_11894181.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
USDA 5905]
gi|416831986|ref|ZP_11899276.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
LSU-61]
gi|417123432|ref|ZP_11972342.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0246]
gi|417131759|ref|ZP_11976544.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.0588]
gi|417140245|ref|ZP_11983495.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0259]
gi|417151085|ref|ZP_11990824.1| signal transduction histidine-protein kinase BarA [Escherichia coli
1.2264]
gi|417158307|ref|ZP_11995931.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0497]
gi|417166538|ref|ZP_11999894.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0741]
gi|417176363|ref|ZP_12006159.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.2608]
gi|417186397|ref|ZP_12011540.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0624]
gi|417251766|ref|ZP_12043531.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4.0967]
gi|417262307|ref|ZP_12049781.1| signal transduction histidine-protein kinase BarA [Escherichia coli
2.3916]
gi|417269489|ref|ZP_12056849.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.3884]
gi|417272771|ref|ZP_12060120.1| signal transduction histidine-protein kinase BarA [Escherichia coli
2.4168]
gi|417277282|ref|ZP_12064607.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.2303]
gi|417280932|ref|ZP_12068232.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3003]
gi|417290845|ref|ZP_12078126.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B41]
gi|417295753|ref|ZP_12083000.1| signal transduction histidine-protein kinase BarA [Escherichia coli
900105 (10e)]
gi|417309227|ref|ZP_12096066.1| Signal transduction histidine-protein kinase BarA [Escherichia coli
PCN033]
gi|417582274|ref|ZP_12233075.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_B2F1]
gi|417587802|ref|ZP_12238568.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_C165-02]
gi|417598084|ref|ZP_12248718.1| signal transduction histidine-protein kinase barA [Escherichia coli
3030-1]
gi|417603442|ref|ZP_12254009.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_94C]
gi|417609411|ref|ZP_12259911.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_DG131-3]
gi|417614242|ref|ZP_12264699.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_EH250]
gi|417619370|ref|ZP_12269783.1| signal transduction histidine-protein kinase barA [Escherichia coli
G58-1]
gi|417624772|ref|ZP_12275068.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_H.1.8]
gi|417630091|ref|ZP_12280327.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_MHI813]
gi|417635804|ref|ZP_12286015.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_S1191]
gi|417640573|ref|ZP_12290711.1| signal transduction histidine-protein kinase barA [Escherichia coli
TX1999]
gi|417668179|ref|ZP_12317721.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_O31]
gi|417683640|ref|ZP_12332987.1| signal transduction histidine-protein kinase barA [Shigella boydii
3594-74]
gi|417866856|ref|ZP_12511896.1| hypothetical protein C22711_3784 [Escherichia coli O104:H4 str.
C227-11]
gi|417945406|ref|ZP_12588639.1| hybrid sensory histidine kinase BarA [Escherichia coli XH140A]
gi|417975626|ref|ZP_12616424.1| hybrid sensory histidine kinase BarA [Escherichia coli XH001]
gi|418041346|ref|ZP_12679571.1| hybrid sensory histidine kinase BarA [Escherichia coli W26]
gi|418304341|ref|ZP_12916135.1| signal transduction histidine-protein kinase barA [Escherichia coli
UMNF18]
gi|418942462|ref|ZP_13495736.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H43 str.
T22]
gi|418956840|ref|ZP_13508765.1| hybrid sensory histidine kinase BarA [Escherichia coli J53]
gi|419046674|ref|ZP_13593609.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3A]
gi|419052515|ref|ZP_13599382.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3B]
gi|419058508|ref|ZP_13605311.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3C]
gi|419063999|ref|ZP_13610724.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3D]
gi|419070949|ref|ZP_13616564.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3E]
gi|419076907|ref|ZP_13622413.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3F]
gi|419081973|ref|ZP_13627420.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4A]
gi|419087811|ref|ZP_13633164.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4B]
gi|419093927|ref|ZP_13639209.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4C]
gi|419099496|ref|ZP_13644690.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4D]
gi|419105322|ref|ZP_13650449.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4E]
gi|419110787|ref|ZP_13655841.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4F]
gi|419116159|ref|ZP_13661174.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5A]
gi|419127231|ref|ZP_13672109.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5C]
gi|419132808|ref|ZP_13677642.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5D]
gi|419143712|ref|ZP_13688446.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6A]
gi|419149710|ref|ZP_13694362.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC6B]
gi|419155204|ref|ZP_13699763.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6C]
gi|419160516|ref|ZP_13705017.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6D]
gi|419165567|ref|ZP_13710021.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC6E]
gi|419171483|ref|ZP_13715368.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC7A]
gi|419192863|ref|ZP_13736314.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC7E]
gi|419211115|ref|ZP_13754188.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8C]
gi|419217048|ref|ZP_13760044.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8D]
gi|419222794|ref|ZP_13765711.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8E]
gi|419228204|ref|ZP_13771052.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9A]
gi|419239198|ref|ZP_13781909.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9C]
gi|419244715|ref|ZP_13787350.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9D]
gi|419250522|ref|ZP_13793095.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9E]
gi|419256322|ref|ZP_13798829.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10A]
gi|419262620|ref|ZP_13805031.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10B]
gi|419268739|ref|ZP_13811084.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10C]
gi|419274043|ref|ZP_13816334.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10D]
gi|419279290|ref|ZP_13821534.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10E]
gi|419285471|ref|ZP_13827640.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10F]
gi|419290804|ref|ZP_13832893.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC11A]
gi|419296088|ref|ZP_13838131.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC11B]
gi|419301544|ref|ZP_13843541.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11C]
gi|419307669|ref|ZP_13849567.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11D]
gi|419312684|ref|ZP_13854544.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11E]
gi|419318071|ref|ZP_13859872.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC12A]
gi|419341213|ref|ZP_13882674.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12E]
gi|419346457|ref|ZP_13887828.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13A]
gi|419350919|ref|ZP_13892252.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13B]
gi|419356322|ref|ZP_13897575.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13C]
gi|419366514|ref|ZP_13907670.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13E]
gi|419371254|ref|ZP_13912367.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC14A]
gi|419376752|ref|ZP_13917775.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14B]
gi|419382065|ref|ZP_13923011.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14C]
gi|419387406|ref|ZP_13928279.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14D]
gi|419392884|ref|ZP_13933687.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15A]
gi|419397864|ref|ZP_13938632.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15B]
gi|419403271|ref|ZP_13943991.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15C]
gi|419408435|ref|ZP_13949121.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15D]
gi|419701586|ref|ZP_14229185.1| hybrid sensory histidine kinase BarA [Escherichia coli SCI-07]
gi|419805177|ref|ZP_14330320.1| hybrid sensory histidine kinase BarA [Escherichia coli AI27]
gi|419811308|ref|ZP_14336184.1| hybrid sensory histidine kinase BarA [Escherichia coli O32:H37 str.
P4]
gi|419862064|ref|ZP_14384681.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H25 str.
CVM9340]
gi|419867629|ref|ZP_14389944.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H2 str.
CVM9450]
gi|419875036|ref|ZP_14396917.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11 str.
CVM9534]
gi|419885838|ref|ZP_14406502.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11 str.
CVM9545]
gi|419901690|ref|ZP_14421005.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM9942]
gi|419910574|ref|ZP_14429090.1| signal transduction histidine-protein kinase barA [Escherichia coli
O26:H11 str. CVM10026]
gi|419920079|ref|ZP_14438211.1| hybrid sensory histidine kinase BarA [Escherichia coli KD2]
gi|419924275|ref|ZP_14442168.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-15]
gi|419927198|ref|ZP_14444936.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-1]
gi|419934569|ref|ZP_14451676.1| hybrid sensory histidine kinase BarA [Escherichia coli 576-1]
gi|419948385|ref|ZP_14464682.1| hybrid sensory histidine kinase BarA [Escherichia coli CUMT8]
gi|420099313|ref|ZP_14610548.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11 str.
CVM9455]
gi|420115209|ref|ZP_14624786.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10021]
gi|420123299|ref|ZP_14632191.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10030]
gi|420128790|ref|ZP_14637338.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10224]
gi|420134441|ref|ZP_14642548.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM9952]
gi|420271077|ref|ZP_14773431.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA22]
gi|420276797|ref|ZP_14779079.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA40]
gi|420282434|ref|ZP_14784667.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW06591]
gi|420288050|ref|ZP_14790234.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW10246]
gi|420293793|ref|ZP_14795908.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW11039]
gi|420299711|ref|ZP_14801757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09109]
gi|420305692|ref|ZP_14807682.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW10119]
gi|420311184|ref|ZP_14813114.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1738]
gi|420316890|ref|ZP_14818763.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1734]
gi|420327153|ref|ZP_14828899.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
CCH060]
gi|420354166|ref|ZP_14855256.1| signal transduction histidine-protein kinase BarA [Shigella boydii
4444-74]
gi|420360096|ref|ZP_14861057.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
3226-85]
gi|420364699|ref|ZP_14865573.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella sonnei 4822-66]
gi|420381930|ref|ZP_14881370.1| signal transduction histidine-protein kinase BarA [Shigella
dysenteriae 225-75]
gi|420386876|ref|ZP_14886222.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EPECa12]
gi|420392768|ref|ZP_14892016.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli EPEC C342-62]
gi|421683801|ref|ZP_16123592.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 1485-80]
gi|421813777|ref|ZP_16249489.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0416]
gi|421825606|ref|ZP_16260961.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK920]
gi|421832303|ref|ZP_16267587.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA7]
gi|422331782|ref|ZP_16412797.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4_1_47FAA]
gi|422355752|ref|ZP_16436459.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 117-3]
gi|422363517|ref|ZP_16444054.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 153-1]
gi|422383134|ref|ZP_16463286.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 57-2]
gi|422760244|ref|ZP_16814004.1| hsp90-like protein [Escherichia coli E1167]
gi|422767711|ref|ZP_16821437.1| hsp90-like protein [Escherichia coli E1520]
gi|422775992|ref|ZP_16829647.1| hsp90-like protein [Escherichia coli H120]
gi|422787693|ref|ZP_16840431.1| hsp90-like protein [Escherichia coli H489]
gi|422791913|ref|ZP_16844615.1| hsp90-like protein [Escherichia coli TA007]
gi|422817900|ref|ZP_16866113.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M919]
gi|422828163|ref|ZP_16876335.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B093]
gi|422834276|ref|ZP_16882339.1| signal transduction histidine-protein kinase BarA [Escherichia coli
E101]
gi|422988887|ref|ZP_16979660.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. C227-11]
gi|422995779|ref|ZP_16986543.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. C236-11]
gi|423000925|ref|ZP_16991679.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 09-7901]
gi|423004594|ref|ZP_16995340.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 04-8351]
gi|423011096|ref|ZP_17001830.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-3677]
gi|423020324|ref|ZP_17011033.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4404]
gi|423025490|ref|ZP_17016187.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4522]
gi|423031311|ref|ZP_17021998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4623]
gi|423039136|ref|ZP_17029810.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423044256|ref|ZP_17034923.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423045985|ref|ZP_17036645.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423054523|ref|ZP_17043330.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423061498|ref|ZP_17050294.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423703876|ref|ZP_17678301.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H730]
gi|423706938|ref|ZP_17681321.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B799]
gi|423726588|ref|ZP_17700593.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA31]
gi|424078891|ref|ZP_17815871.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA505]
gi|424085351|ref|ZP_17821847.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA517]
gi|424091765|ref|ZP_17827699.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1996]
gi|424098398|ref|ZP_17833700.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1985]
gi|424104630|ref|ZP_17839392.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1990]
gi|424111291|ref|ZP_17845527.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93-001]
gi|424117228|ref|ZP_17851067.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA3]
gi|424123410|ref|ZP_17856731.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA5]
gi|424129568|ref|ZP_17862475.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA9]
gi|424135880|ref|ZP_17868342.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA10]
gi|424142429|ref|ZP_17874310.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA14]
gi|424148843|ref|ZP_17880219.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA15]
gi|424154668|ref|ZP_17885617.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA24]
gi|424252512|ref|ZP_17891178.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA25]
gi|424330865|ref|ZP_17897084.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA28]
gi|424451105|ref|ZP_17902801.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA32]
gi|424457301|ref|ZP_17908432.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA33]
gi|424463750|ref|ZP_17914170.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA39]
gi|424470071|ref|ZP_17919893.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA41]
gi|424476590|ref|ZP_17925908.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA42]
gi|424482350|ref|ZP_17931330.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW07945]
gi|424488517|ref|ZP_17937078.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09098]
gi|424495112|ref|ZP_17942802.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09195]
gi|424501877|ref|ZP_17948773.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4203]
gi|424508127|ref|ZP_17954523.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4196]
gi|424515458|ref|ZP_17960128.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW14313]
gi|424521673|ref|ZP_17965799.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW14301]
gi|424527558|ref|ZP_17971275.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4421]
gi|424533713|ref|ZP_17977062.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4422]
gi|424545864|ref|ZP_17988262.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4402]
gi|424552105|ref|ZP_17993960.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4439]
gi|424558282|ref|ZP_17999699.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4436]
gi|424564626|ref|ZP_18005630.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4437]
gi|424570764|ref|ZP_18011318.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4448]
gi|424576920|ref|ZP_18016986.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1845]
gi|424582748|ref|ZP_18022395.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1863]
gi|424754069|ref|ZP_18181989.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424765849|ref|ZP_18193218.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425099421|ref|ZP_18502153.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.4870]
gi|425105516|ref|ZP_18507835.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.2239]
gi|425111531|ref|ZP_18513452.1| signal transduction histidine-protein kinase BarA [Escherichia coli
6.0172]
gi|425116313|ref|ZP_18518104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0566]
gi|425127452|ref|ZP_18528621.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0586]
gi|425133187|ref|ZP_18534037.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.2524]
gi|425139773|ref|ZP_18540155.1| signal transduction histidine-protein kinase BarA [Escherichia coli
10.0833]
gi|425145481|ref|ZP_18545479.1| signal transduction histidine-protein kinase BarA [Escherichia coli
10.0869]
gi|425151595|ref|ZP_18551210.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.0221]
gi|425157468|ref|ZP_18556732.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA34]
gi|425169564|ref|ZP_18568038.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA507]
gi|425181657|ref|ZP_18579353.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1999]
gi|425187925|ref|ZP_18585200.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1997]
gi|425194696|ref|ZP_18591465.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE1487]
gi|425201169|ref|ZP_18597378.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE037]
gi|425207558|ref|ZP_18603355.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK2001]
gi|425213310|ref|ZP_18608712.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA4]
gi|425219433|ref|ZP_18614399.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA23]
gi|425225983|ref|ZP_18620451.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA49]
gi|425232244|ref|ZP_18626285.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA45]
gi|425238164|ref|ZP_18631884.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TT12B]
gi|425244383|ref|ZP_18637689.1| signal transduction histidine-protein kinase BarA [Escherichia coli
MA6]
gi|425250543|ref|ZP_18643485.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5905]
gi|425256373|ref|ZP_18648891.1| signal transduction histidine-protein kinase BarA [Escherichia coli
CB7326]
gi|425262635|ref|ZP_18654641.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC96038]
gi|425268633|ref|ZP_18660264.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5412]
gi|425279157|ref|ZP_18670390.1| signal transduction histidine-protein kinase BarA [Escherichia coli
ARS4.2123]
gi|425284476|ref|ZP_18675508.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW00353]
gi|425289917|ref|ZP_18680751.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3006]
gi|425296067|ref|ZP_18686262.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA38]
gi|425301624|ref|ZP_18691509.1| signal transduction histidine-protein kinase BarA [Escherichia coli
07798]
gi|425306521|ref|ZP_18696216.1| signal transduction histidine-protein kinase BarA [Escherichia coli
N1]
gi|425312771|ref|ZP_18701954.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1735]
gi|425318760|ref|ZP_18707550.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1736]
gi|425324835|ref|ZP_18713202.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1737]
gi|425331198|ref|ZP_18719050.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1846]
gi|425337378|ref|ZP_18724747.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1847]
gi|425343711|ref|ZP_18730602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1848]
gi|425349517|ref|ZP_18735987.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1849]
gi|425355817|ref|ZP_18741885.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1850]
gi|425361778|ref|ZP_18747426.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1856]
gi|425367972|ref|ZP_18753121.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1862]
gi|425374305|ref|ZP_18758949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1864]
gi|425380973|ref|ZP_18764982.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1865]
gi|425387199|ref|ZP_18770758.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1866]
gi|425393851|ref|ZP_18776960.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1868]
gi|425399986|ref|ZP_18782693.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1869]
gi|425406074|ref|ZP_18788297.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1870]
gi|425412462|ref|ZP_18794226.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE098]
gi|425418788|ref|ZP_18800059.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK523]
gi|425423606|ref|ZP_18804769.1| signal transduction histidine-protein kinase BarA [Escherichia coli
0.1288]
gi|425430045|ref|ZP_18810657.1| signal transduction histidine-protein kinase BarA [Escherichia coli
0.1304]
gi|428948477|ref|ZP_19020757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.1467]
gi|428954560|ref|ZP_19026358.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.1042]
gi|428960537|ref|ZP_19031842.1| signal transduction histidine-protein kinase BarA [Escherichia coli
89.0511]
gi|428967155|ref|ZP_19037874.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.0091]
gi|428972950|ref|ZP_19043288.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.0039]
gi|428979471|ref|ZP_19049294.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.2281]
gi|428985116|ref|ZP_19054512.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0055]
gi|428991275|ref|ZP_19060266.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0056]
gi|429003405|ref|ZP_19071525.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0183]
gi|429016041|ref|ZP_19082934.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0943]
gi|429027937|ref|ZP_19093940.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0427]
gi|429034126|ref|ZP_19099651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0939]
gi|429040204|ref|ZP_19105309.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0932]
gi|429045977|ref|ZP_19110691.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0107]
gi|429051485|ref|ZP_19116053.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0003]
gi|429056899|ref|ZP_19121212.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.1742]
gi|429062387|ref|ZP_19126396.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0007]
gi|429068664|ref|ZP_19132128.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0672]
gi|429074585|ref|ZP_19137838.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0678]
gi|429079821|ref|ZP_19142956.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0713]
gi|429720353|ref|ZP_19255280.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429772253|ref|ZP_19304273.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02030]
gi|429777200|ref|ZP_19309174.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429785925|ref|ZP_19317820.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02092]
gi|429791815|ref|ZP_19323669.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02093]
gi|429792664|ref|ZP_19324512.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02281]
gi|429799239|ref|ZP_19331037.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02318]
gi|429802856|ref|ZP_19334616.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02913]
gi|429812652|ref|ZP_19344335.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-03439]
gi|429813200|ref|ZP_19344879.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-04080]
gi|429818408|ref|ZP_19350042.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-03943]
gi|429827831|ref|ZP_19358870.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0109]
gi|429834192|ref|ZP_19364531.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0010]
gi|429904759|ref|ZP_19370738.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429908895|ref|ZP_19374859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429914769|ref|ZP_19380716.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429919799|ref|ZP_19385730.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429925619|ref|ZP_19391532.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429929555|ref|ZP_19395457.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429936094|ref|ZP_19401980.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429941774|ref|ZP_19407648.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429944455|ref|ZP_19410317.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429952013|ref|ZP_19417859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955362|ref|ZP_19421194.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432354693|ref|ZP_19597962.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE2]
gi|432366268|ref|ZP_19609387.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE10]
gi|432377958|ref|ZP_19620945.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE12]
gi|432382485|ref|ZP_19625425.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE15]
gi|432388417|ref|ZP_19631299.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE16]
gi|432393240|ref|ZP_19636069.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE21]
gi|432403044|ref|ZP_19645793.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE26]
gi|432412907|ref|ZP_19655567.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE39]
gi|432418237|ref|ZP_19660833.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE44]
gi|432427314|ref|ZP_19669805.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE181]
gi|432432982|ref|ZP_19675407.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE187]
gi|432437464|ref|ZP_19679851.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE188]
gi|432457805|ref|ZP_19699985.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE201]
gi|432461775|ref|ZP_19703917.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE204]
gi|432477004|ref|ZP_19718996.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE208]
gi|432482095|ref|ZP_19724047.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE210]
gi|432496800|ref|ZP_19738595.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE214]
gi|432505544|ref|ZP_19747265.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE220]
gi|432515048|ref|ZP_19752269.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE224]
gi|432518872|ref|ZP_19756054.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE228]
gi|432524938|ref|ZP_19762063.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE230]
gi|432527577|ref|ZP_19764663.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE233]
gi|432539042|ref|ZP_19775940.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE235]
gi|432565046|ref|ZP_19801620.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE51]
gi|432569826|ref|ZP_19806335.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE53]
gi|432577008|ref|ZP_19813462.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE56]
gi|432593959|ref|ZP_19830272.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE60]
gi|432603430|ref|ZP_19839672.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE66]
gi|432608626|ref|ZP_19844809.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE67]
gi|432612766|ref|ZP_19848924.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE72]
gi|432622992|ref|ZP_19859015.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE76]
gi|432632543|ref|ZP_19868465.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE80]
gi|432642252|ref|ZP_19878080.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE83]
gi|432647318|ref|ZP_19883104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE86]
gi|432652267|ref|ZP_19888018.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE87]
gi|432656909|ref|ZP_19892610.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE93]
gi|432661989|ref|ZP_19897627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE111]
gi|432667245|ref|ZP_19902822.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE116]
gi|432671860|ref|ZP_19907386.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE119]
gi|432675886|ref|ZP_19911341.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE142]
gi|432681388|ref|ZP_19916755.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE143]
gi|432686596|ref|ZP_19921889.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE156]
gi|432687987|ref|ZP_19923264.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE161]
gi|432700177|ref|ZP_19935328.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE169]
gi|432719893|ref|ZP_19954859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE9]
gi|432733526|ref|ZP_19968352.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE45]
gi|432738238|ref|ZP_19972993.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE42]
gi|432746742|ref|ZP_19981405.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE43]
gi|432751206|ref|ZP_19985803.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE29]
gi|432760612|ref|ZP_19995103.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE46]
gi|432766132|ref|ZP_20000554.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE48]
gi|432771703|ref|ZP_20006024.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE50]
gi|432775831|ref|ZP_20010097.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE54]
gi|432784657|ref|ZP_20018835.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE63]
gi|432793938|ref|ZP_20028020.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE78]
gi|432795439|ref|ZP_20029499.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE79]
gi|432806944|ref|ZP_20040859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE91]
gi|432810467|ref|ZP_20044345.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE101]
gi|432816501|ref|ZP_20050263.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE115]
gi|432828404|ref|ZP_20062022.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE135]
gi|432835714|ref|ZP_20069248.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE136]
gi|432845759|ref|ZP_20078493.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE141]
gi|432853904|ref|ZP_20082449.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE144]
gi|432863894|ref|ZP_20087706.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE146]
gi|432870214|ref|ZP_20090671.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE147]
gi|432876674|ref|ZP_20094562.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE154]
gi|432887876|ref|ZP_20101804.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE158]
gi|432906143|ref|ZP_20114871.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE194]
gi|432914086|ref|ZP_20119626.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE190]
gi|432935737|ref|ZP_20135005.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE184]
gi|432939222|ref|ZP_20137372.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE183]
gi|432948834|ref|ZP_20143757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE196]
gi|432956436|ref|ZP_20148135.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE197]
gi|432963124|ref|ZP_20152543.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE202]
gi|432968838|ref|ZP_20157750.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE203]
gi|432972902|ref|ZP_20161766.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE207]
gi|432974894|ref|ZP_20163729.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE209]
gi|432986505|ref|ZP_20175223.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE215]
gi|432996449|ref|ZP_20185033.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE218]
gi|433001020|ref|ZP_20189542.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE223]
gi|433019858|ref|ZP_20208038.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE105]
gi|433039749|ref|ZP_20227345.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE113]
gi|433044310|ref|ZP_20231799.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE117]
gi|433049168|ref|ZP_20236511.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE120]
gi|433054422|ref|ZP_20241591.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE122]
gi|433059228|ref|ZP_20246268.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE124]
gi|433064191|ref|ZP_20251105.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE125]
gi|433069068|ref|ZP_20255848.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE128]
gi|433083657|ref|ZP_20270111.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE133]
gi|433088427|ref|ZP_20274794.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE137]
gi|433093139|ref|ZP_20279398.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE138]
gi|433102330|ref|ZP_20288407.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE145]
gi|433116632|ref|ZP_20302419.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE153]
gi|433126302|ref|ZP_20311855.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE160]
gi|433131304|ref|ZP_20316735.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE163]
gi|433135965|ref|ZP_20321303.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE166]
gi|433140370|ref|ZP_20325621.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE167]
gi|433145346|ref|ZP_20330485.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE168]
gi|433150289|ref|ZP_20335304.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE174]
gi|433159805|ref|ZP_20344636.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE177]
gi|433179609|ref|ZP_20364000.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE82]
gi|433189530|ref|ZP_20373623.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE88]
gi|433194811|ref|ZP_20378793.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE90]
gi|433208866|ref|ZP_20392538.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE97]
gi|433213650|ref|ZP_20397238.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE99]
gi|442594308|ref|ZP_21012222.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|442603658|ref|ZP_21018529.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
Nissle 1917]
gi|444932062|ref|ZP_21251099.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0814]
gi|444937492|ref|ZP_21256267.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0815]
gi|444943136|ref|ZP_21261651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0816]
gi|444948652|ref|ZP_21266962.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0839]
gi|444954167|ref|ZP_21272258.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0848]
gi|444959681|ref|ZP_21277532.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1753]
gi|444964836|ref|ZP_21282434.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1775]
gi|444970820|ref|ZP_21288181.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1793]
gi|444976102|ref|ZP_21293220.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1805]
gi|444981496|ref|ZP_21298406.1| signal transduction histidine-protein kinase BarA [Escherichia coli
ATCC 700728]
gi|444986897|ref|ZP_21303677.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA11]
gi|444992198|ref|ZP_21308840.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA19]
gi|444997503|ref|ZP_21314000.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA13]
gi|445003076|ref|ZP_21319465.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA2]
gi|445008508|ref|ZP_21324747.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA47]
gi|445013614|ref|ZP_21329721.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA48]
gi|445019515|ref|ZP_21335478.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA8]
gi|445024898|ref|ZP_21340720.1| signal transduction histidine-protein kinase BarA [Escherichia coli
7.1982]
gi|445030320|ref|ZP_21345992.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1781]
gi|445035741|ref|ZP_21351271.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1762]
gi|445041367|ref|ZP_21356739.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA35]
gi|445046594|ref|ZP_21361844.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.4880]
gi|445052136|ref|ZP_21367176.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0083]
gi|445057868|ref|ZP_21372726.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0670]
gi|450191892|ref|ZP_21891440.1| hybrid sensory histidine kinase BarA [Escherichia coli SEPT362]
gi|450220996|ref|ZP_21896490.1| hybrid sensory histidine kinase BarA [Escherichia coli O08]
gi|452969389|ref|ZP_21967616.1| sensory histidine kinase [Escherichia coli O157:H7 str. EC4009]
gi|83288337|sp|P0AEC7.1|BARA_ECO57 RecName: Full=Signal transduction histidine-protein kinase BarA
gi|83288338|sp|P0AEC6.1|BARA_ECOL6 RecName: Full=Signal transduction histidine-protein kinase BarA
gi|83288339|sp|P0AEC5.1|BARA_ECOLI RecName: Full=Signal transduction histidine-protein kinase BarA
gi|26109594|gb|AAN81797.1|AE016765_199 Sensor protein barA [Escherichia coli CFT073]
gi|216535|dbj|BAA01710.1| sensor-regulator protein [Escherichia coli]
gi|1789149|gb|AAC75828.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. MG1655]
gi|13363117|dbj|BAB37069.1| sensor-regulator protein barA [Escherichia coli O157:H7 str. Sakai]
gi|73856835|gb|AAZ89542.1| sensor-regulator, activates OmpR by phophorylation [Shigella sonnei
Ss046]
gi|81242316|gb|ABB63026.1| sensor-regulator [Shigella dysenteriae Sd197]
gi|85675605|dbj|BAA16571.2| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K12 substr. W3110]
gi|157067920|gb|ABV07175.1| sensor histidine kinase/response regulator BarA [Escherichia coli HS]
gi|157081203|gb|ABV20911.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E24377A]
gi|169753896|gb|ACA76595.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
gi|169890192|gb|ACB03899.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. DH10B]
gi|170518620|gb|ACB16798.1| sensor histidine kinase/response regulator BarA [Escherichia coli
SMS-3-5]
gi|187429703|gb|ACD08977.1| sensor histidine kinase/response regulator BarA [Shigella boydii CDC
3083-94]
gi|187767204|gb|EDU31048.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4196]
gi|188014881|gb|EDU53003.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4113]
gi|188487752|gb|EDU62855.1| sensor histidine kinase/response regulator BarA [Escherichia coli
53638]
gi|189003359|gb|EDU72345.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4076]
gi|189354721|gb|EDU73140.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4401]
gi|189363700|gb|EDU82119.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4486]
gi|189365501|gb|EDU83917.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4501]
gi|189372239|gb|EDU90655.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC869]
gi|189375500|gb|EDU93916.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC508]
gi|190901394|gb|EDV61158.1| sensor histidine kinase/response regulator BarA [Escherichia coli
B7A]
gi|192955579|gb|EDV86057.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E110019]
gi|194415616|gb|EDX31883.1| sensor histidine kinase/response regulator BarA [Escherichia coli
B171]
gi|194421397|gb|EDX37413.1| sensor histidine kinase/response regulator BarA [Escherichia coli
101-1]
gi|208725454|gb|EDZ75055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4206]
gi|208735449|gb|EDZ84136.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4045]
gi|208741062|gb|EDZ88744.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4042]
gi|209160321|gb|ACI37754.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4115]
gi|209761428|gb|ACI79026.1| sensor-regulator protein barA [Escherichia coli]
gi|209761430|gb|ACI79027.1| sensor-regulator protein barA [Escherichia coli]
gi|209761432|gb|ACI79028.1| sensor-regulator protein barA [Escherichia coli]
gi|209761434|gb|ACI79029.1| sensor-regulator protein barA [Escherichia coli]
gi|209761436|gb|ACI79030.1| sensor-regulator protein barA [Escherichia coli]
gi|209913494|dbj|BAG78568.1| two-component sensor kinase [Escherichia coli SE11]
gi|217319809|gb|EEC28234.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. TW14588]
gi|218362105|emb|CAQ99714.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli IAI1]
gi|218433379|emb|CAR14281.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli UMN026]
gi|226839460|gb|EEH71481.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
1_1_43]
gi|227834593|gb|EEJ45059.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
gi|238861442|gb|ACR63440.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli BW2952]
gi|254594128|gb|ACT73489.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O157:H7 str. TW14359]
gi|257755545|dbj|BAI27047.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O26:H11 str. 11368]
gi|257760579|dbj|BAI32076.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O103:H2 str. 12009]
gi|260448163|gb|ACX38585.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
gi|290763988|gb|ADD57949.1| Signal transduction histidine-protein kinase barA [Escherichia coli
O55:H7 str. CB9615]
gi|291322202|gb|EFE61631.1| two-component system [Escherichia coli B088]
gi|291426284|gb|EFE99316.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
gi|291432222|gb|EFF05204.1| two-component system [Escherichia coli B185]
gi|291468905|gb|EFF11396.1| signal transduction histidine-protein kinase barA [Escherichia coli
B354]
gi|298277155|gb|EFI18671.1| two-component system [Escherichia coli FVEC1302]
gi|299879748|gb|EFI87959.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 196-1]
gi|300298688|gb|EFJ55073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 185-1]
gi|300315220|gb|EFJ65004.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 175-1]
gi|300358135|gb|EFJ74005.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 198-1]
gi|300394900|gb|EFJ78438.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 69-1]
gi|300401524|gb|EFJ85062.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 84-1]
gi|300410145|gb|EFJ93683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 45-1]
gi|300420480|gb|EFK03791.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 182-1]
gi|300450174|gb|EFK13794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 116-1]
gi|300526836|gb|EFK47905.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 119-7]
gi|300531726|gb|EFK52788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 107-1]
gi|300840158|gb|EFK67918.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 124-1]
gi|300847476|gb|EFK75236.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 78-1]
gi|305854372|gb|EFM54810.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
gi|306907220|gb|EFN37726.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
gi|307554758|gb|ADN47533.1| sensor-regulator [Escherichia coli ABU 83972]
gi|308121223|gb|EFO58485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 145-7]
gi|308926210|gb|EFP71688.1| signal transduction histidine-protein kinase barA [Shigella
dysenteriae 1617]
gi|309703144|emb|CBJ02478.1| two-component sensor kinase/response regulator [Escherichia coli ETEC
H10407]
gi|310332940|gb|EFQ00154.1| signal transduction histidine-protein kinase barA [Escherichia coli
1827-70]
gi|315137393|dbj|BAJ44552.1| signal transduction histidine-protein kinase [Escherichia coli DH1]
gi|315256645|gb|EFU36613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 85-1]
gi|315293741|gb|EFU53093.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 153-1]
gi|315615172|gb|EFU95809.1| signal transduction histidine-protein kinase barA [Escherichia coli
3431]
gi|320189119|gb|EFW63778.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EC1212]
gi|320202430|gb|EFW77000.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B]
gi|320640434|gb|EFX09973.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
G5101]
gi|320645681|gb|EFX14666.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
493-89]
gi|320650981|gb|EFX19421.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str. H
2687]
gi|320662373|gb|EFX29770.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
USDA 5905]
gi|320667071|gb|EFX34034.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
LSU-61]
gi|323154830|gb|EFZ41023.1| signal transduction histidine-protein kinase barA [Escherichia coli
EPECa14]
gi|323159899|gb|EFZ45869.1| signal transduction histidine-protein kinase barA [Escherichia coli
E128010]
gi|323167874|gb|EFZ53565.1| signal transduction histidine-protein kinase barA [Shigella sonnei
53G]
gi|323183325|gb|EFZ68722.1| signal transduction histidine-protein kinase barA [Escherichia coli
OK1357]
gi|323188798|gb|EFZ74083.1| signal transduction histidine-protein kinase barA [Escherichia coli
RN587/1]
gi|323935852|gb|EGB32155.1| hsp90-like protein [Escherichia coli E1520]
gi|323946491|gb|EGB42517.1| hsp90-like protein [Escherichia coli H120]
gi|323960696|gb|EGB56320.1| hsp90-like protein [Escherichia coli H489]
gi|323971612|gb|EGB66843.1| hsp90-like protein [Escherichia coli TA007]
gi|324005670|gb|EGB74889.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 57-2]
gi|324016361|gb|EGB85580.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 117-3]
gi|324119828|gb|EGC13707.1| hsp90-like protein [Escherichia coli E1167]
gi|326339142|gb|EGD62957.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
1044]
gi|326342975|gb|EGD66743.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
1125]
gi|331058277|gb|EGI30258.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA143]
gi|331063188|gb|EGI35101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA271]
gi|331068373|gb|EGI39768.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA280]
gi|331073593|gb|EGI44914.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H591]
gi|331078021|gb|EGI49227.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H299]
gi|332092168|gb|EGI97246.1| signal transduction histidine-protein kinase barA [Shigella boydii
3594-74]
gi|332102899|gb|EGJ06245.1| hybrid sensory histidine kinase in two-component system response
regulatory system with UvrY [Shigella sp. D9]
gi|332344677|gb|AEE58011.1| signal transduction histidine-protein kinase BarA [Escherichia coli
UMNK88]
gi|338769207|gb|EGP23988.1| Signal transduction histidine-protein kinase BarA [Escherichia coli
PCN033]
gi|339416439|gb|AEJ58111.1| signal transduction histidine-protein kinase barA [Escherichia coli
UMNF18]
gi|341920145|gb|EGT69754.1| hypothetical protein C22711_3784 [Escherichia coli O104:H4 str.
C227-11]
gi|342362805|gb|EGU26919.1| hybrid sensory histidine kinase BarA [Escherichia coli XH140A]
gi|342929555|gb|EGU98277.1| sensor protein GacS [Escherichia coli MS 79-10]
gi|344194787|gb|EGV48859.1| hybrid sensory histidine kinase BarA [Escherichia coli XH001]
gi|345334137|gb|EGW66582.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_C165-02]
gi|345335731|gb|EGW68168.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_B2F1]
gi|345348964|gb|EGW81255.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_94C]
gi|345351904|gb|EGW84156.1| signal transduction histidine-protein kinase barA [Escherichia coli
3030-1]
gi|345356622|gb|EGW88823.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_DG131-3]
gi|345361276|gb|EGW93437.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_EH250]
gi|345371662|gb|EGX03631.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_MHI813]
gi|345374683|gb|EGX06634.1| signal transduction histidine-protein kinase barA [Escherichia coli
G58-1]
gi|345376217|gb|EGX08160.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_H.1.8]
gi|345386674|gb|EGX16507.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_S1191]
gi|345392356|gb|EGX22137.1| signal transduction histidine-protein kinase barA [Escherichia coli
TX1999]
gi|349739240|gb|AEQ13946.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O7:K1 str. CE10]
gi|354862614|gb|EHF23052.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. C236-11]
gi|354867898|gb|EHF28320.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. C227-11]
gi|354868294|gb|EHF28712.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 04-8351]
gi|354873896|gb|EHF34273.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 09-7901]
gi|354880579|gb|EHF40915.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-3677]
gi|354888086|gb|EHF48348.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4404]
gi|354892321|gb|EHF52530.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4522]
gi|354893527|gb|EHF53730.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354896330|gb|EHF56501.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4623]
gi|354897707|gb|EHF57864.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354911559|gb|EHF71563.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354913508|gb|EHF73498.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354916465|gb|EHF76437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|355421420|gb|AER85617.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone D
i2']
gi|355426340|gb|AER90536.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone D
i14']
gi|359333042|dbj|BAL39489.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. MDS42]
gi|371602811|gb|EHN91499.1| signal transduction histidine-protein kinase BarA [Escherichia coli
E101]
gi|371615603|gb|EHO04002.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B093]
gi|373247375|gb|EHP66821.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4_1_47FAA]
gi|374360136|gb|AEZ41843.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
RM12579]
gi|375322210|gb|EHS67981.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H43 str.
T22]
gi|377891362|gb|EHU55814.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3B]
gi|377892277|gb|EHU56723.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3A]
gi|377904102|gb|EHU68389.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3C]
gi|377908983|gb|EHU73192.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3D]
gi|377910406|gb|EHU74594.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3E]
gi|377920127|gb|EHU84160.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3F]
gi|377924944|gb|EHU88885.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4A]
gi|377929085|gb|EHU92985.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4B]
gi|377940217|gb|EHV03967.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4D]
gi|377941040|gb|EHV04786.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4C]
gi|377946502|gb|EHV10182.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4E]
gi|377956356|gb|EHV19906.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4F]
gi|377959511|gb|EHV23007.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5A]
gi|377972950|gb|EHV36294.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5C]
gi|377974233|gb|EHV37561.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5D]
gi|377991362|gb|EHV54513.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC6B]
gi|377992727|gb|EHV55872.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6A]
gi|377995053|gb|EHV58173.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6C]
gi|378006136|gb|EHV69123.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6D]
gi|378008496|gb|EHV71455.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC6E]
gi|378014457|gb|EHV77362.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC7A]
gi|378037565|gb|EHW00092.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC7E]
gi|378051660|gb|EHW13976.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8C]
gi|378059637|gb|EHW21836.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8D]
gi|378064239|gb|EHW26400.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8E]
gi|378072181|gb|EHW34244.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9A]
gi|378082392|gb|EHW44337.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9C]
gi|378088677|gb|EHW50527.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9D]
gi|378092939|gb|EHW54758.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9E]
gi|378099009|gb|EHW60734.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10A]
gi|378104582|gb|EHW66240.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10B]
gi|378109245|gb|EHW70856.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10C]
gi|378114749|gb|EHW76300.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10D]
gi|378126569|gb|EHW87963.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10E]
gi|378128578|gb|EHW89960.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC11A]
gi|378129501|gb|EHW90872.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10F]
gi|378140813|gb|EHX02036.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC11B]
gi|378147631|gb|EHX08778.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11D]
gi|378149143|gb|EHX10270.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11C]
gi|378156761|gb|EHX17807.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11E]
gi|378167868|gb|EHX28779.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC12A]
gi|378184404|gb|EHX45040.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13A]
gi|378185762|gb|EHX46386.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12E]
gi|378198506|gb|EHX58976.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13B]
gi|378199195|gb|EHX59663.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13C]
gi|378211505|gb|EHX71843.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13E]
gi|378215391|gb|EHX75688.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC14A]
gi|378218299|gb|EHX78571.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14B]
gi|378226561|gb|EHX86747.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14C]
gi|378230137|gb|EHX90264.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14D]
gi|378235852|gb|EHX95907.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15A]
gi|378243985|gb|EHY03931.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15B]
gi|378245526|gb|EHY05463.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15C]
gi|378252996|gb|EHY12874.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15D]
gi|380347048|gb|EIA35337.1| hybrid sensory histidine kinase BarA [Escherichia coli SCI-07]
gi|383104214|gb|AFG41723.1| Signal transduction histidine-protein kinase barA [Escherichia coli
P12b]
gi|383475682|gb|EID67636.1| hybrid sensory histidine kinase BarA [Escherichia coli W26]
gi|384380634|gb|EIE38500.1| hybrid sensory histidine kinase BarA [Escherichia coli J53]
gi|384471837|gb|EIE55905.1| hybrid sensory histidine kinase BarA [Escherichia coli AI27]
gi|385155926|gb|EIF17926.1| hybrid sensory histidine kinase BarA [Escherichia coli O32:H37 str.
P4]
gi|385538413|gb|EIF85275.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M919]
gi|385706992|gb|EIG44024.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H730]
gi|385710943|gb|EIG47915.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B799]
gi|386121018|gb|EIG69636.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
4_1_40B]
gi|386146823|gb|EIG93268.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0246]
gi|386149613|gb|EIH00902.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.0588]
gi|386156368|gb|EIH12713.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0259]
gi|386160579|gb|EIH22390.1| signal transduction histidine-protein kinase BarA [Escherichia coli
1.2264]
gi|386167057|gb|EIH33577.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0497]
gi|386171695|gb|EIH43734.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0741]
gi|386179055|gb|EIH56534.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.2608]
gi|386182389|gb|EIH65147.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0624]
gi|386218615|gb|EII35098.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4.0967]
gi|386223753|gb|EII46102.1| signal transduction histidine-protein kinase BarA [Escherichia coli
2.3916]
gi|386228294|gb|EII55650.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.3884]
gi|386236471|gb|EII68447.1| signal transduction histidine-protein kinase BarA [Escherichia coli
2.4168]
gi|386240156|gb|EII77081.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.2303]
gi|386245261|gb|EII86991.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3003]
gi|386253167|gb|EIJ02857.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B41]
gi|386259197|gb|EIJ14671.1| signal transduction histidine-protein kinase BarA [Escherichia coli
900105 (10e)]
gi|386797424|gb|AFJ30458.1| hybrid sensory histidine kinase BarA [Escherichia coli Xuzhou21]
gi|388346005|gb|EIL11748.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H25 str.
CVM9340]
gi|388346702|gb|EIL12412.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H2 str.
CVM9450]
gi|388347850|gb|EIL13499.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11 str.
CVM9545]
gi|388349614|gb|EIL15082.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11 str.
CVM9534]
gi|388371350|gb|EIL34831.1| signal transduction histidine-protein kinase barA [Escherichia coli
O26:H11 str. CVM10026]
gi|388375404|gb|EIL38422.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM9942]
gi|388385821|gb|EIL47487.1| hybrid sensory histidine kinase BarA [Escherichia coli KD2]
gi|388390514|gb|EIL52000.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-15]
gi|388407778|gb|EIL68141.1| hybrid sensory histidine kinase BarA [Escherichia coli 576-1]
gi|388408036|gb|EIL68396.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-1]
gi|388421400|gb|EIL81016.1| hybrid sensory histidine kinase BarA [Escherichia coli CUMT8]
gi|390640233|gb|EIN19697.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1996]
gi|390642084|gb|EIN21506.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA517]
gi|390642327|gb|EIN21728.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA505]
gi|390659209|gb|EIN36976.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93-001]
gi|390660301|gb|EIN38015.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1985]
gi|390662480|gb|EIN40076.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1990]
gi|390676099|gb|EIN52214.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA3]
gi|390679437|gb|EIN55337.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA5]
gi|390682668|gb|EIN58411.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA9]
gi|390694854|gb|EIN69410.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA10]
gi|390699653|gb|EIN73996.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA15]
gi|390699816|gb|EIN74156.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA14]
gi|390713413|gb|EIN86351.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA22]
gi|390720933|gb|EIN93634.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA25]
gi|390722641|gb|EIN95283.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA24]
gi|390726093|gb|EIN98570.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA28]
gi|390740520|gb|EIO11641.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA31]
gi|390741264|gb|EIO12342.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA32]
gi|390744198|gb|EIO15106.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA33]
gi|390757145|gb|EIO26634.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA40]
gi|390765799|gb|EIO34949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA41]
gi|390766666|gb|EIO35781.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA39]
gi|390767309|gb|EIO36392.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA42]
gi|390780595|gb|EIO48295.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW06591]
gi|390788531|gb|EIO55997.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW07945]
gi|390788612|gb|EIO56077.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW10246]
gi|390795407|gb|EIO62691.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW11039]
gi|390803778|gb|EIO70768.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09098]
gi|390806119|gb|EIO73041.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09109]
gi|390814957|gb|EIO81506.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW10119]
gi|390824618|gb|EIO90580.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4203]
gi|390828071|gb|EIO93760.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09195]
gi|390829780|gb|EIO95374.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4196]
gi|390844859|gb|EIP08556.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW14313]
gi|390845150|gb|EIP08831.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW14301]
gi|390849682|gb|EIP13104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4421]
gi|390860333|gb|EIP22655.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4422]
gi|390869522|gb|EIP31154.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4402]
gi|390877342|gb|EIP38276.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4439]
gi|390882781|gb|EIP43263.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4436]
gi|390892198|gb|EIP51786.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4437]
gi|390894653|gb|EIP54151.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4448]
gi|390899379|gb|EIP58627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1738]
gi|390907147|gb|EIP66016.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1734]
gi|390917874|gb|EIP76290.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1863]
gi|390919193|gb|EIP77550.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1845]
gi|391248457|gb|EIQ07698.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
CCH060]
gi|391276228|gb|EIQ35001.1| signal transduction histidine-protein kinase BarA [Shigella boydii
4444-74]
gi|391279853|gb|EIQ38534.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
3226-85]
gi|391293057|gb|EIQ51356.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella sonnei 4822-66]
gi|391299437|gb|EIQ57401.1| signal transduction histidine-protein kinase BarA [Shigella
dysenteriae 225-75]
gi|391304187|gb|EIQ62005.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EPECa12]
gi|391311367|gb|EIQ69003.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli EPEC C342-62]
gi|394384519|gb|EJE62078.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10224]
gi|394407341|gb|EJE82203.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10021]
gi|394417135|gb|EJE90885.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10030]
gi|394421485|gb|EJE94952.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM9952]
gi|394423235|gb|EJE96499.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11 str.
CVM9455]
gi|397784145|gb|EJK95001.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_O31]
gi|404337681|gb|EJZ64132.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 1485-80]
gi|406776407|gb|AFS55831.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407052976|gb|AFS73027.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2011C-3493]
gi|407066695|gb|AFS87742.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408063788|gb|EKG98277.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA7]
gi|408065699|gb|EKH00169.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK920]
gi|408068896|gb|EKH03310.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA34]
gi|408081542|gb|EKH15549.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA507]
gi|408096652|gb|EKH29587.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1999]
gi|408103042|gb|EKH35427.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1997]
gi|408107798|gb|EKH39868.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE1487]
gi|408114265|gb|EKH45827.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE037]
gi|408120244|gb|EKH51268.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK2001]
gi|408126518|gb|EKH57078.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA4]
gi|408136590|gb|EKH66329.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA23]
gi|408139017|gb|EKH68651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA49]
gi|408145320|gb|EKH74498.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA45]
gi|408153913|gb|EKH82283.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TT12B]
gi|408158859|gb|EKH86962.1| signal transduction histidine-protein kinase BarA [Escherichia coli
MA6]
gi|408162772|gb|EKH90659.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5905]
gi|408172251|gb|EKH99328.1| signal transduction histidine-protein kinase BarA [Escherichia coli
CB7326]
gi|408178874|gb|EKI05566.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC96038]
gi|408182067|gb|EKI08601.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5412]
gi|408200143|gb|EKI25331.1| signal transduction histidine-protein kinase BarA [Escherichia coli
ARS4.2123]
gi|408200665|gb|EKI25841.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW00353]
gi|408212150|gb|EKI36683.1| signal transduction histidine-protein kinase BarA [Escherichia coli
07798]
gi|408212422|gb|EKI36948.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3006]
gi|408216170|gb|EKI40503.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA38]
gi|408225968|gb|EKI49628.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1735]
gi|408227314|gb|EKI50911.1| signal transduction histidine-protein kinase BarA [Escherichia coli
N1]
gi|408237171|gb|EKI60036.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1736]
gi|408241161|gb|EKI63810.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1737]
gi|408245765|gb|EKI68117.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1846]
gi|408254274|gb|EKI75804.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1847]
gi|408258055|gb|EKI79343.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1848]
gi|408264624|gb|EKI85421.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1849]
gi|408273088|gb|EKI93154.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1850]
gi|408276129|gb|EKI96062.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1856]
gi|408284895|gb|EKJ03949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1862]
gi|408290079|gb|EKJ08816.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1864]
gi|408295177|gb|EKJ13514.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1865]
gi|408306582|gb|EKJ23948.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1868]
gi|408306929|gb|EKJ24291.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1866]
gi|408317714|gb|EKJ33944.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1869]
gi|408323772|gb|EKJ39733.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1870]
gi|408325471|gb|EKJ41346.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE098]
gi|408335590|gb|EKJ50428.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK523]
gi|408342469|gb|EKJ56896.1| signal transduction histidine-protein kinase BarA [Escherichia coli
0.1288]
gi|408345283|gb|EKJ59625.1| signal transduction histidine-protein kinase BarA [Escherichia coli
0.1304]
gi|408548046|gb|EKK25431.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.4870]
gi|408548524|gb|EKK25908.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.2239]
gi|408549520|gb|EKK26880.1| signal transduction histidine-protein kinase BarA [Escherichia coli
6.0172]
gi|408565841|gb|EKK41922.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0566]
gi|408567143|gb|EKK43203.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0586]
gi|408577841|gb|EKK53391.1| signal transduction histidine-protein kinase BarA [Escherichia coli
10.0833]
gi|408580590|gb|EKK55994.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.2524]
gi|408590684|gb|EKK65158.1| signal transduction histidine-protein kinase BarA [Escherichia coli
10.0869]
gi|408595385|gb|EKK69620.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.0221]
gi|408600144|gb|EKK74003.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0416]
gi|421933984|gb|EKT91762.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421934999|gb|EKT92722.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11 str.
CFSAN001630]
gi|427203307|gb|EKV73612.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.1042]
gi|427205489|gb|EKV75738.1| signal transduction histidine-protein kinase BarA [Escherichia coli
89.0511]
gi|427207034|gb|EKV77212.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.1467]
gi|427220126|gb|EKV89070.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.0091]
gi|427223281|gb|EKV92040.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.2281]
gi|427227217|gb|EKV95797.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.0039]
gi|427240440|gb|EKW07893.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0056]
gi|427240954|gb|EKW08400.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0055]
gi|427259440|gb|EKW25478.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0183]
gi|427260266|gb|EKW26257.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0943]
gi|427278034|gb|EKW42530.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0427]
gi|427282211|gb|EKW46484.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0939]
gi|427290717|gb|EKW54175.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0932]
gi|427297718|gb|EKW60742.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0107]
gi|427299756|gb|EKW62725.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0003]
gi|427311257|gb|EKW73470.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.1742]
gi|427313962|gb|EKW76033.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0007]
gi|427318442|gb|EKW80309.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0672]
gi|427327059|gb|EKW88460.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0678]
gi|427328119|gb|EKW89487.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0713]
gi|429252638|gb|EKY37156.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0109]
gi|429254422|gb|EKY38839.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0010]
gi|429347455|gb|EKY84228.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02092]
gi|429358491|gb|EKY95160.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02030]
gi|429360236|gb|EKY96895.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429360547|gb|EKY97205.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02093]
gi|429363915|gb|EKZ00540.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02318]
gi|429375470|gb|EKZ12004.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02281]
gi|429377878|gb|EKZ14393.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-03439]
gi|429389523|gb|EKZ25943.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02913]
gi|429393357|gb|EKZ29752.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-03943]
gi|429403361|gb|EKZ39645.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-04080]
gi|429405848|gb|EKZ42112.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429408729|gb|EKZ44964.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429413165|gb|EKZ49354.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429415894|gb|EKZ52052.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429419575|gb|EKZ55710.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429431054|gb|EKZ67104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429435090|gb|EKZ71110.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429437316|gb|EKZ73323.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429442433|gb|EKZ78390.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429446583|gb|EKZ82511.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429450195|gb|EKZ86091.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429455952|gb|EKZ91799.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec12-0466]
gi|430873601|gb|ELB97167.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE2]
gi|430892539|gb|ELC15030.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE10]
gi|430897420|gb|ELC19625.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE12]
gi|430904999|gb|ELC26680.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE16]
gi|430906226|gb|ELC27827.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE15]
gi|430917503|gb|ELC38550.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE21]
gi|430924508|gb|ELC45224.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE26]
gi|430934367|gb|ELC54734.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE39]
gi|430937515|gb|ELC57769.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE44]
gi|430951164|gb|ELC70384.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE187]
gi|430953840|gb|ELC72727.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE181]
gi|430961637|gb|ELC79644.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE188]
gi|430981090|gb|ELC97830.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE201]
gi|430987748|gb|ELD04271.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE204]
gi|431003133|gb|ELD18619.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE208]
gi|431005479|gb|ELD20501.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE210]
gi|431022493|gb|ELD35754.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE214]
gi|431037060|gb|ELD48048.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE220]
gi|431040423|gb|ELD50958.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE224]
gi|431049269|gb|ELD59231.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE228]
gi|431050612|gb|ELD60357.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE230]
gi|431062041|gb|ELD71323.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE233]
gi|431068035|gb|ELD76541.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE235]
gi|431091673|gb|ELD97383.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE51]
gi|431098918|gb|ELE04224.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE53]
gi|431113794|gb|ELE17443.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE56]
gi|431126361|gb|ELE28708.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE60]
gi|431136705|gb|ELE38561.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE67]
gi|431139789|gb|ELE41567.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE66]
gi|431146949|gb|ELE48372.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE72]
gi|431157851|gb|ELE58482.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE76]
gi|431168626|gb|ELE68864.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE80]
gi|431178665|gb|ELE78572.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE86]
gi|431179784|gb|ELE79675.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE83]
gi|431189367|gb|ELE88790.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE87]
gi|431189712|gb|ELE89131.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE93]
gi|431198063|gb|ELE96888.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE111]
gi|431199385|gb|ELE98137.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE116]
gi|431209192|gb|ELF07303.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE119]
gi|431213061|gb|ELF10980.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE142]
gi|431218935|gb|ELF16359.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE143]
gi|431220570|gb|ELF17903.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE156]
gi|431237647|gb|ELF32638.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE161]
gi|431242422|gb|ELF36842.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE169]
gi|431261396|gb|ELF53435.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE9]
gi|431273292|gb|ELF64378.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE45]
gi|431281082|gb|ELF71990.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE42]
gi|431290682|gb|ELF81217.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE43]
gi|431294964|gb|ELF85136.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE29]
gi|431306852|gb|ELF95157.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE46]
gi|431309142|gb|ELF97419.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE48]
gi|431313584|gb|ELG01556.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE50]
gi|431316940|gb|ELG04736.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE54]
gi|431327814|gb|ELG15134.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE63]
gi|431338008|gb|ELG25095.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE78]
gi|431350505|gb|ELG37316.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE79]
gi|431353386|gb|ELG40139.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE91]
gi|431360818|gb|ELG47417.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE101]
gi|431363120|gb|ELG49693.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE115]
gi|431383258|gb|ELG67382.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE135]
gi|431383769|gb|ELG67892.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE136]
gi|431393935|gb|ELG77481.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE141]
gi|431398319|gb|ELG81739.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE144]
gi|431403604|gb|ELG86881.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE146]
gi|431409184|gb|ELG92359.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE147]
gi|431415354|gb|ELG97899.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE158]
gi|431419055|gb|ELH01414.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE154]
gi|431430534|gb|ELH12365.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE194]
gi|431437617|gb|ELH19125.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE190]
gi|431451629|gb|ELH32100.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE184]
gi|431455466|gb|ELH35821.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE196]
gi|431462217|gb|ELH42434.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE183]
gi|431466340|gb|ELH46415.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE197]
gi|431468548|gb|ELH48481.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE203]
gi|431471699|gb|ELH51591.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE202]
gi|431480379|gb|ELH60099.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE207]
gi|431486960|gb|ELH66605.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE209]
gi|431498281|gb|ELH77494.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE215]
gi|431503993|gb|ELH82725.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE218]
gi|431507530|gb|ELH85815.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE223]
gi|431529470|gb|ELI06171.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE105]
gi|431550147|gb|ELI24144.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE113]
gi|431554840|gb|ELI28716.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE117]
gi|431563480|gb|ELI36692.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE120]
gi|431567870|gb|ELI40862.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE124]
gi|431568627|gb|ELI41599.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE122]
gi|431580078|gb|ELI52648.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE125]
gi|431581506|gb|ELI53954.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE128]
gi|431600413|gb|ELI70084.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE133]
gi|431603443|gb|ELI72868.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE137]
gi|431608841|gb|ELI78179.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE138]
gi|431617909|gb|ELI86898.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE145]
gi|431632648|gb|ELJ00935.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE153]
gi|431643053|gb|ELJ10757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE160]
gi|431644667|gb|ELJ12321.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE163]
gi|431655207|gb|ELJ22247.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE166]
gi|431658717|gb|ELJ25628.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE167]
gi|431660504|gb|ELJ27376.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE168]
gi|431669521|gb|ELJ35944.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE174]
gi|431676190|gb|ELJ42313.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE177]
gi|431699723|gb|ELJ64721.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE82]
gi|431704357|gb|ELJ68985.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE88]
gi|431714601|gb|ELJ78786.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE90]
gi|431729314|gb|ELJ92949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE97]
gi|431733563|gb|ELJ96998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE99]
gi|441605694|emb|CCP97502.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441715703|emb|CCQ04506.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
Nissle 1917]
gi|444537109|gb|ELV17060.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0814]
gi|444546813|gb|ELV25479.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0815]
gi|444556641|gb|ELV34038.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0839]
gi|444557126|gb|ELV34489.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0816]
gi|444562213|gb|ELV39289.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0848]
gi|444571909|gb|ELV48365.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1753]
gi|444575459|gb|ELV51696.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1775]
gi|444578422|gb|ELV54484.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1793]
gi|444592035|gb|ELV67296.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA11]
gi|444592335|gb|ELV67594.1| signal transduction histidine-protein kinase BarA [Escherichia coli
ATCC 700728]
gi|444593831|gb|ELV69036.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1805]
gi|444605240|gb|ELV79882.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA13]
gi|444606024|gb|ELV80650.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA19]
gi|444614594|gb|ELV88820.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA2]
gi|444622251|gb|ELV96215.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA47]
gi|444623223|gb|ELV97158.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA48]
gi|444628714|gb|ELW02451.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA8]
gi|444637277|gb|ELW10651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
7.1982]
gi|444640079|gb|ELW13368.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1781]
gi|444643837|gb|ELW16963.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1762]
gi|444653528|gb|ELW26249.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA35]
gi|444658900|gb|ELW31337.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.4880]
gi|444662435|gb|ELW34689.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0083]
gi|444669023|gb|ELW41021.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0670]
gi|449316108|gb|EMD06230.1| hybrid sensory histidine kinase BarA [Escherichia coli O08]
gi|449319139|gb|EMD09195.1| hybrid sensory histidine kinase BarA [Escherichia coli SEPT362]
Length = 918
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|417228679|ref|ZP_12030437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.0959]
gi|386208014|gb|EII12519.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.0959]
Length = 918
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESQLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|340520002|gb|EGR50239.1| histidine kinase [Trichoderma reesei QM6a]
Length = 1254
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 199/623 (31%), Positives = 298/623 (47%), Gaps = 104/623 (16%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
I+ + + + + AE A+ KS+FLA +SHEIRTPMNG++GM Q+ +DT+L Q
Sbjct: 704 ISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTQYQR 763
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
+ ++ L+++I+D+LD +KIE+ R+ E +P+ L + N L + KAN+K +
Sbjct: 764 EMLNIVNDLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKTLAVKANEKFL 823
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
+L V VP+ VIGD R RQII NLVGN+IKFT+ H VS+
Sbjct: 824 DLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFTE---HGEVSL-------------- 866
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++Q + DK + P G + VEDT
Sbjct: 867 --------TIQEQEDKRHVG----P-----------------------GEYAIEFIVEDT 891
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI + IF F QAD S +R +GGTG+GLSIS+ V LMGG++ SE G GS F
Sbjct: 892 GIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRFVNLMGGDLWVNSEVGKGSEF 951
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH-- 955
FT + ++ + QQ P +RG + L + DKS T E+ +H
Sbjct: 952 HFTCRVKLADVHA-ESVQQQLKP----YRGHQVLFV-DKSQSNAATHIGEMLEEIGLHPV 1005
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
V NS + S L+ LP A+++ D RR ++ +
Sbjct: 1006 VVNSEK--SSALTRLKEGGALPYDAIIVDSIDT---------------ARRLRAVDDFKY 1048
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSL 1075
LP I LLA + + + L GI + +T P +L L E+ R PSL
Sbjct: 1049 LP-IVLLAPVVHVSLKSCLDL-GITSYMTMPCKLIDLSNGMIPALEN-------RATPSL 1099
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
+ K +IL+ +DN VN+++A L+K+ +VT V G AV+ + FD MD+Q
Sbjct: 1100 ADVTKSFEILLAEDNTVNQKLAVKILEKYHHVVTVVGNGWEAVEAV-KQKKFDVILMDVQ 1158
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP M GF+AT +IR E +G PI+A+TA + E+C+
Sbjct: 1159 MPIMGGFEATGKIREYER-----------------GMGTHRTPIIALTAHAMMGDREKCI 1201
Query: 1196 KCGMDDYVSKPFEDEQLYTAVAR 1218
+ MD+Y+SKP + QL + +
Sbjct: 1202 QAQMDEYLSKPLQQNQLIQTILK 1224
>gi|415811652|ref|ZP_11503965.1| signal transduction histidine-protein kinase barA [Escherichia coli
LT-68]
gi|323172911|gb|EFZ58542.1| signal transduction histidine-protein kinase barA [Escherichia coli
LT-68]
Length = 918
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------RQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|301645250|ref|ZP_07245202.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 146-1]
gi|331643471|ref|ZP_08344602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H736]
gi|432637993|ref|ZP_19873860.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE81]
gi|432705538|ref|ZP_19940634.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE171]
gi|301076453|gb|EFK91259.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 146-1]
gi|331036942|gb|EGI09166.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H736]
gi|431169408|gb|ELE69627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE81]
gi|431241322|gb|ELF35758.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE171]
Length = 918
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|444926362|ref|ZP_21245647.1| signal transduction histidine-protein kinase BarA [Escherichia coli
09BKT078844]
gi|444538794|gb|ELV18640.1| signal transduction histidine-protein kinase BarA [Escherichia coli
09BKT078844]
Length = 918
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|301069192|dbj|BAJ11975.1| histidine kinase ExpS [Pectobacterium carotovorum subsp. carotovorum]
Length = 933
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 187/630 (29%), Positives = 306/630 (48%), Gaps = 116/630 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQT 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY T S +L+++INDVLD +K+E+G+L E +PF LH+ LD+V+ L + A++KG+
Sbjct: 329 DYLLTIERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VPE +GDP R +QIITNL+GN+IKFT+ +G+I D+R
Sbjct: 389 ELTLSIQNDVPEQFVGDPLRIQQIITNLLGNAIKFTE-QGNI--------DIR------- 432
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+EK + H ++L V + DT
Sbjct: 433 --VEKRRQELHH--------------------------------------VQLEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F SE GSTF
Sbjct: 453 GIGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F +T L+P P + +G ++ I A+ T + +
Sbjct: 513 WFHITL------PLNPHAIPTEPAYTMLQGKHLAYVEYHPIAAQAT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L SY + + LP+ ++ + + +L Y + + +I R P
Sbjct: 557 SQTPLIVSY---SPTFEQLPEGEFDILLLGIPVQYRNTLLDYTPRLR------DICRRSP 607
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED--------PESSKKLQQK 1069
+ L S+++ D ++LK+ G+ L+KPL S L+ Q+ P+ + Q
Sbjct: 608 CVILALPSLAQMDAEQLKTFGVHACLSKPLAASRLLPLLQDSTLFQFSFLPDDTASHQSA 667
Query: 1070 RKKPSLGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
+ HL + +++ VDDN N ++ L++ + + G+ A+ + + D
Sbjct: 668 AR-----HLARLPLRVMAVDDNPANLKLIGTLLEEQVETIILCESGQDAIAQ-AELNQCD 721
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD+QMP MDG A+ IR + + PI+A+TA +
Sbjct: 722 IILMDIQMPGMDGICASELIRQIPHHAT--------------------TPIIAVTAQTMT 761
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
E ++ GMDDY++KP +++ L + + R
Sbjct: 762 GEREHLLRSGMDDYLAKPIDEQMLKSVLTR 791
>gi|254415523|ref|ZP_05029283.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196177704|gb|EDX72708.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1568
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 200/665 (30%), Positives = 311/665 (46%), Gaps = 131/665 (19%)
Query: 581 VVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGV 640
V I + H++ + Q+ + + + AEAA AKS+FLAT+SHEIRTPMN V
Sbjct: 867 VGIAIAQAHLWEQETRQRQQLTEQNVALEKARQTAEAATQAKSEFLATMSHEIRTPMNAV 926
Query: 641 LGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700
+GM +L+DTEL + Q +A+T NSG L+++IND+LD +KIESG++E E PF L
Sbjct: 927 IGMTGLLLDTELTSDQRYFAETIRNSGDALLTIINDILDFSKIESGKMELEEQPFELRTC 986
Query: 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIF 760
++ L L ++KA +K +ELA + + P + GD R RQI+ NL+ N++KFT G +
Sbjct: 987 IEEALDLLTTKAAEKNLELAYLIDSQTPNWIAGDVTRLRQILVNLISNAVKFT-PTGEVL 1045
Query: 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTN 820
VSV + D +D+ DR+
Sbjct: 1046 VSV----TAQILADEEDR-------------------------GDRY------------- 1063
Query: 821 TMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVEL 880
+L V+DTG+GIP++ R+F F Q DSSTSR YGGTG+GL+I + L E+
Sbjct: 1064 --------QLQFAVKDTGIGIPVDRIHRLFKSFSQVDSSTSRQYGGTGLGLAICKRLCEM 1115
Query: 881 MGGEI--------------GFVS-----EPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
MGG++ G+++ E GSTF FT+ + +PD
Sbjct: 1116 MGGQMWVESGGSVAGNPPAGWIATDSGEESSGGSTFYFTI-------------LSESIPD 1162
Query: 922 ---------VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCS 972
+ G R L++DD + ++ Q M S Q A ++LS
Sbjct: 1163 SAVVEQPICATYLAGKRLLIVDDNTTNCQILIRQAQSWGMESQATESGQEALAWLSQG-- 1220
Query: 973 TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
Q + ++D + + G+ L ++ Q + + P + L + E
Sbjct: 1221 ----EQYDIAILDMQMPGMD-GITLGEQIRHQFK------DKEFPLLILSSMGKPEIASG 1269
Query: 1033 ELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKPSLGHLLKGK---QILVV 1087
++++ L+KP++ S L + + +K + PSL L + +ILV
Sbjct: 1270 VVEAN-FAAFLSKPIKQSQLYNLLTQILSGQPTKIKRSPVGSPSLDPTLAQRIPLRILVA 1328
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN VN+++A L++ G G ++ L +D FMD+QMPEMDG AT
Sbjct: 1329 EDNKVNQQLALQLLQRMGYRADVAGNGLEVIEALR-RQPYDVVFMDVQMPEMDGLDAT-- 1385
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
RH I +Q I+AMTA+ +Q E+C++ GMDDY+SKP
Sbjct: 1386 -RH----ICQQWLPANRPR------------IIAMTANAMQGDREKCLEVGMDDYISKPI 1428
Query: 1208 EDEQL 1212
+L
Sbjct: 1429 RVNEL 1433
>gi|110642927|ref|YP_670657.1| hybrid sensory histidine kinase BarA [Escherichia coli 536]
gi|191171166|ref|ZP_03032716.1| sensor histidine kinase/response regulator BarA [Escherichia coli
F11]
gi|300976311|ref|ZP_07173375.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 200-1]
gi|422373090|ref|ZP_16453419.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 60-1]
gi|427805947|ref|ZP_18973014.1| sensor-regulator, activates OmpR by phophorylation [Escherichia coli
chi7122]
gi|427810540|ref|ZP_18977605.1| sensor-regulator, activates OmpR by phophorylation [Escherichia coli]
gi|432466935|ref|ZP_19709021.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE205]
gi|432472087|ref|ZP_19714127.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE206]
gi|432582132|ref|ZP_19818546.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE57]
gi|432714496|ref|ZP_19949529.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE8]
gi|433073980|ref|ZP_20260627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE129]
gi|433078934|ref|ZP_20265458.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE131]
gi|433121317|ref|ZP_20306983.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE157]
gi|433184453|ref|ZP_20368695.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE85]
gi|443618818|ref|YP_007382674.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O78]
gi|110344519|gb|ABG70756.1| sensor protein BarA [Escherichia coli 536]
gi|190908466|gb|EDV68055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
F11]
gi|300308553|gb|EFJ63073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 200-1]
gi|324015532|gb|EGB84751.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 60-1]
gi|412964129|emb|CCK48055.1| sensor-regulator, activates OmpR by phophorylation [Escherichia coli
chi7122]
gi|412970719|emb|CCJ45369.1| sensor-regulator, activates OmpR by phophorylation [Escherichia coli]
gi|430992732|gb|ELD09101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE205]
gi|430996718|gb|ELD12993.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE206]
gi|431122414|gb|ELE25283.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE57]
gi|431255075|gb|ELF48334.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE8]
gi|431585466|gb|ELI57414.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE129]
gi|431595332|gb|ELI65399.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE131]
gi|431641150|gb|ELJ08894.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE157]
gi|431704554|gb|ELJ69180.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE85]
gi|443423326|gb|AGC88230.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O78]
Length = 918
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 945
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 193/606 (31%), Positives = 282/606 (46%), Gaps = 97/606 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + K AEAA+ AKSQFLA +SHEIRTPMNGVLGM ++L+ T L Q +T H S
Sbjct: 263 ELHQAKEAAEAANRAKSQFLANMSHEIRTPMNGVLGMTELLLSTALTQKQRSLTETLHRS 322
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G L+ +IN++LD +KIE+G+L+ E + F L +++ + LF+ A +K +EL +V
Sbjct: 323 GTGLMDIINEILDFSKIEAGKLKLERIEFGLRQTVEDAVDLFAETAGRKHLELTCFVPPD 382
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P+ VI G+ ++ Q +L LN
Sbjct: 383 IPDTVI--------------GDPVRLRQ------------------------IL---LNL 401
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V + + T SG V +++ T T + L + DTGVGIP Q
Sbjct: 402 V---GNAIKFTQSGDVAV-------TLELVTPTTT-----NLTLKFRIRDTGVGIPEATQ 446
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F F QAD+ST+R +GGTG+GL+I + L LMGG++G S G GSTF FTV +
Sbjct: 447 ARLFQAFSQADNSTTRKFGGTGLGLAIVKQLALLMGGDVGVDSVSGQGSTFWFTVELEQA 506
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+ + + D G L++DD + HL AV A S A +
Sbjct: 507 AQRTAASGATERPLD-----GFSILIVDDNPTNRHILETHLSAWGAAVLSATSGLEALAL 561
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
L C+ LA++ I D G+ L +++ R G+ + + +S+
Sbjct: 562 LDRQCTAQRRIHLAVLDIHMPDMD---GMTLAQTIREDARLSGM--------VLVALSSV 610
Query: 1027 SE-TDRDELKSDGIVTLLTKPLRLSVLIGCF----QEDPESSKKLQQKRKKPSLGHLLKG 1081
+ TD + L KP S+L C P + +P +
Sbjct: 611 DQVTDESQRHPSLFSAWLRKPAHQSLLKDCLTRLCHHVPTTGAP---APVQPDDQAVPFA 667
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+L+ +DN VNR VA L+ G T V+ GR AV+ LT +FD MD MPEMDG
Sbjct: 668 AHVLLAEDNPVNREVAFTMLELLGCTTTMVENGREAVEALTN-RSFDLVLMDCHMPEMDG 726
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
AT IR E + + H I+A+TA+ +Q E+C+ GMDD
Sbjct: 727 LTATALIREQETQATQP----------------RHTTIVALTANALQGDRERCLAAGMDD 770
Query: 1202 YVSKPF 1207
Y+SKPF
Sbjct: 771 YLSKPF 776
>gi|419182121|ref|ZP_13725732.1| HAMP domain protein [Escherichia coli DEC7C]
gi|378022241|gb|EHV84928.1| HAMP domain protein [Escherichia coli DEC7C]
Length = 734
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 85 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 144
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 145 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 204
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 205 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 246
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 247 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 268
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 269 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 328
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 329 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 372
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 373 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 422
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 423 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 478
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 479 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 537
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 538 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 577
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 578 AGMSDYLAKPIEEERLHNLLLRY 600
>gi|419187571|ref|ZP_13731081.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC7D]
gi|419324368|ref|ZP_13866058.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12B]
gi|419335858|ref|ZP_13877380.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12D]
gi|378027489|gb|EHV90118.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC7D]
gi|378163583|gb|EHX24535.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12B]
gi|378180734|gb|EHX41415.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12D]
Length = 895
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 246 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 305
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 306 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 365
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 366 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 407
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 408 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 429
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 430 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 489
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 490 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 533
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 534 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 583
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 584 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 639
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 640 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 698
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 699 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 738
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 739 AGMSDYLAKPIEEERLHNLLLRY 761
>gi|323493472|ref|ZP_08098594.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546]
gi|323312295|gb|EGA65437.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546]
Length = 1052
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 199/621 (32%), Positives = 298/621 (47%), Gaps = 101/621 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + +++AE A KS FLA +SHEIRTPMN ++GM + + TEL Q DY HNS
Sbjct: 288 ELNQARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQHDYISKIHNS 347
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIE+G+L E + FHL DVL NV + KA +KG+EL +
Sbjct: 348 ASLLLGIINDILDFSKIEAGKLSIETIEFHLDDVLHNVSMVTGQKAFEKGLELIFQIDRD 407
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP+V+ GDP R QII NLV N++KFT+ +G I V V KV++K V + +
Sbjct: 408 VPKVLYGDPLRLGQIIINLVNNAVKFTE-QGEITVHVTRTPHSDQKVELKFSVQDTGIGM 466
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+SDK+++ F D + T
Sbjct: 467 SPEQSDKLFSA---------------FTQADGSTT------------------------- 486
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV--TFT 904
R YGGTG+GLSI R LVELMGG I S G GS F+F V F
Sbjct: 487 ---------------RRYGGTGLGLSICRRLVELMGGSIQVESILGQGSEFTFNVFTGFA 531
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
EG D + VP ++A+V+DD V L L A + +S + A
Sbjct: 532 EG-----DNAKSRVVPQT--LNDVKAMVVDDNEHALLVMEDLLDVLPNAPSLVSSGERAI 584
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
+ L + LV +D W K G+ Q+ R+ + +R PK+ ++
Sbjct: 585 AQLKQAAAEK--QPYNLVFMD---W-KMPGMS-GIEATQKIRQTLPDDAR--PKVVIVTA 635
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRKKPSLGHLLKGK 1082
E +L+ + L+KP+ S L + P K+ K S L+G
Sbjct: 636 YDKEDISLDLEDLDVSGFLSKPVGQSYLFDLLMDLFGPTLDKEKNSHSTKRSKDSSLRGL 695
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPH-----NFDACFMDLQMP 1137
++L+V+DN +N+++A +++ G VT + G+ A+D L + +F+ FMDLQMP
Sbjct: 696 RVLLVEDNEINQQIAVELMEEKGLKVTVANNGQEALDTLESTYQQGSTSFEIIFMDLQMP 755
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG++A +IR +N +E +P++AMTA + E+C+
Sbjct: 756 VMDGYEAGTRIRA-DNRFDE-------------------IPLVAMTAHAMIEERERCLSI 795
Query: 1198 GMDDYVSKPFEDEQLYTAVAR 1218
GM+D+VSKP + E L++ + R
Sbjct: 796 GMNDHVSKPIDPEVLFSTIKR 816
>gi|414577554|ref|ZP_11434729.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
3233-85]
gi|391283087|gb|EIQ41710.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
3233-85]
Length = 908
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 259 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 318
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 319 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 378
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 379 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 420
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 421 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 442
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 443 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 502
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 503 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 546
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 547 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 596
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 597 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 652
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 653 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 711
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 712 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 751
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 752 AGMSDYLAKPIEEERLHNLLLRY 774
>gi|416899064|ref|ZP_11928546.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_7v]
gi|417119217|ref|ZP_11969582.1| signal transduction histidine-protein kinase BarA [Escherichia coli
1.2741]
gi|422780294|ref|ZP_16833079.1| hsp90-like protein [Escherichia coli TW10509]
gi|422800705|ref|ZP_16849202.1| hsp90-like protein [Escherichia coli M863]
gi|323966764|gb|EGB62195.1| hsp90-like protein [Escherichia coli M863]
gi|323978603|gb|EGB73685.1| hsp90-like protein [Escherichia coli TW10509]
gi|327251524|gb|EGE63210.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_7v]
gi|386137570|gb|EIG78732.1| signal transduction histidine-protein kinase BarA [Escherichia coli
1.2741]
Length = 918
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 292/623 (46%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLFPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|422959542|ref|ZP_16971177.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H494]
gi|371595093|gb|EHN83946.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H494]
Length = 918
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELAPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|419330323|ref|ZP_13871923.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC12C]
gi|378168798|gb|EHX29701.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC12C]
Length = 720
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 71 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 130
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 131 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 190
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 191 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 232
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 233 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 254
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 255 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 314
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 315 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 358
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 359 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 408
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 409 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 464
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 465 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 523
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 524 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 563
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 564 AGMSDYLAKPIEEERLHNLLLRY 586
>gi|170727319|ref|YP_001761345.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
gi|169812666|gb|ACA87250.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
Length = 1340
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 186/610 (30%), Positives = 294/610 (48%), Gaps = 107/610 (17%)
Query: 609 MELKARAEAAD---VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
+EL+ EAAD AK FLA +SHEIRTPMN ++GM + ++ +L+ Q Y
Sbjct: 585 VELRKAKEAADEVSKAKGDFLANMSHEIRTPMNAIIGMSHLALNADLNPKQRGYVSKIDM 644
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
+ K L+ +IND+LD +K+E+G+L E V F L +VLDN+ ++ + KA +KG+E +
Sbjct: 645 AAKSLLGIINDILDFSKMEAGKLVTEDVDFRLDEVLDNLTNIIAVKAEEKGLEFLFDIDP 704
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P ++GDP R Q++ NL GN+IKFT D G + V V K+L KS +
Sbjct: 705 HIPLALVGDPLRIGQVLINLCGNAIKFT-DSGEVVVGV--------------KLLNKSED 749
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
+ L V D+G+G+ E
Sbjct: 750 G-----------------------------------------LNLQFNVRDSGIGLSQEQ 768
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q ++F F QAD+S +R YGGTG+GL+IS+ LVE+MGG+I S+ G GSTFSFT+
Sbjct: 769 QDKLFKSFSQADASITRKYGGTGLGLTISKRLVEIMGGKIWVTSDEGQGSTFSFTLNC-- 826
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
D K + + G L++DD + E+ L ++ + ++ Q A S
Sbjct: 827 ---GLQDAKMKNNFMPIENLIGKPVLIVDDNDVAREILVNLLTMMKFSPSAVSNGQEAIS 883
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT- 1024
+ S ++ P L+ +D W+ G+ ++ ++ L + + PKI L+
Sbjct: 884 AIE---SENINP-YELIFMD---WNMP-GI---NGIEAIKKIKALNLIKQ-PKIILVTAY 931
Query: 1025 --SISETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPSLGHL 1078
+ T+ E DGI+ KP+ S+L +G + + K + +
Sbjct: 932 GREVGMTEDIEHLLDGII---IKPVNPSILFDSVVGAYGIEGLGVKDNSKNSNSNEIELD 988
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L GK +L+V+DN N+ VA G ++ +T + G+ A+DKL F MD+QMP
Sbjct: 989 LTGKSLLLVEDNETNQEVAMGMMEPFNVDITVANNGQEALDKLEEKE-FQLVLMDMQMPV 1047
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG AT IR N +PI+AMTA+ +++ + C + G
Sbjct: 1048 MDGITATINIRK--------------------NDKYNDLPIVAMTANAMESDVQNCKQAG 1087
Query: 1199 MDDYVSKPFE 1208
M+D++ KP +
Sbjct: 1088 MNDHIGKPID 1097
>gi|193065094|ref|ZP_03046168.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E22]
gi|192927225|gb|EDV81845.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E22]
Length = 918
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 292/623 (46%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKENLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|424539769|ref|ZP_17982713.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4013]
gi|425121070|ref|ZP_18522757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0569]
gi|425273949|ref|ZP_18665354.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW15901]
gi|390864407|gb|EIP26515.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4013]
gi|408192009|gb|EKI17597.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW15901]
gi|408566832|gb|EKK42893.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0569]
Length = 909
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 260 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 319
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 320 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 379
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 380 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 421
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 422 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 443
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 444 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 503
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 504 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 547
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 548 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 597
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 598 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 653
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 654 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 712
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 713 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 752
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 753 AGMSDYLAKPIEEERLHNLLLRY 775
>gi|392410312|ref|YP_006446919.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390623448|gb|AFM24655.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1147
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 184/623 (29%), Positives = 288/623 (46%), Gaps = 110/623 (17%)
Query: 611 LKAR--AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGK 668
++AR AE A AKS+FLA +SHEIRTP+NG++GM Q+ ++T+L Q++Y + S +
Sbjct: 491 IRAREAAEQASRAKSEFLANMSHEIRTPINGIVGMTQLALNTQLTPEQVEYLEAVETSAE 550
Query: 669 DLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVP 728
L+ LIND+LD +K+E+G+LE V F L D + ++ + +A+ KG+EL V++ +P
Sbjct: 551 ALLRLINDILDFSKMEAGKLELVAVDFSLRDSIAETMTTLAVQAHAKGLELLYQVAESIP 610
Query: 729 EVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788
+ + GDPGR RQI+ NL+ N++KFT+ +G + V V + + ++ + V + +
Sbjct: 611 DTLTGDPGRLRQILINLIANALKFTE-RGEVVVKVDPDSETKREIRLHFSVADTGIGIPA 669
Query: 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
K +++N F+ D +
Sbjct: 670 EKQQRIFNA---------------FEQADGS----------------------------- 685
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
TSR YGGTG+GL+IS LV +M G I SEPG GS F FT TF R
Sbjct: 686 -----------TSRKYGGTGLGLAISSELVRMMDGSIWLESEPGRGSIFHFTSTF----R 730
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
+ +P DVS L LV+DD + + L + + + + + A +
Sbjct: 731 VAKEPIHTPAPADVSALENLPVLVVDDNATNRRILENTLLQWQTKPTIVDGGEAALHAMK 790
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL--------PKIF 1020
LV+ D M+ + G E+ R + P I
Sbjct: 791 SAHEEG--RPFKLVITD-------------CMMPEM---DGFELVRRINEHPSWATPTII 832
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVL---IGCFQEDPESSKKLQQKRKKPSLGH 1077
+L ++ D GI L KP++ S L I ++P+ + S+
Sbjct: 833 MLTSAGERGDAARCMKLGISAYLLKPIKQSDLFFTISRVLKEPQDHPAQPSLITRHSIRE 892
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
K IL+ +DN VN+++A L++ G V+ G+ A+D L FD MD+QMP
Sbjct: 893 STKRLHILLAEDNAVNQKLAVKMLERMGHTVSVSANGQEALDCLK-IQKFDLVLMDVQMP 951
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG +AT +R E NE HVPI+AMTA ++ E+C+
Sbjct: 952 IMDGLEATRIVREHEKTSNE------------------HVPIVAMTAYAMKGDKEKCLDA 993
Query: 1198 GMDDYVSKPFEDEQLYTAVARFF 1220
GMD Y+SKP ++L+ + F
Sbjct: 994 GMDGYISKPINAQELFETLEDLF 1016
>gi|419137930|ref|ZP_13682721.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC5E]
gi|377982350|gb|EHV45602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC5E]
Length = 762
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 113 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 172
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 173 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 232
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 233 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 274
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 275 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 296
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 297 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 356
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 357 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 400
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 401 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 450
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 451 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 506
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 507 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 565
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 566 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 605
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 606 AGMSDYLAKPIEEERLHNLLLRY 628
>gi|425175628|ref|ZP_18573748.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA504]
gi|429021990|ref|ZP_19088515.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0428]
gi|408090223|gb|EKH23500.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA504]
gi|427275486|gb|EKW40101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0428]
Length = 748
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 99 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 158
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 159 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 218
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 219 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 260
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 261 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 282
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 283 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 342
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 343 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 386
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 387 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 436
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 437 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 492
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 493 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 551
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 552 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 591
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 592 AGMSDYLAKPIEEERLHNLLLRY 614
>gi|432486542|ref|ZP_19728453.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE212]
gi|433174664|ref|ZP_20359180.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE232]
gi|431014893|gb|ELD28464.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE212]
gi|431690483|gb|ELJ55963.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE232]
Length = 918
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 292/623 (46%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLFG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|417806315|ref|ZP_12453259.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
LB226692]
gi|417834069|ref|ZP_12480515.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
01-09591]
gi|340733065|gb|EGR62197.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
01-09591]
gi|340739048|gb|EGR73285.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
LB226692]
Length = 811
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 162 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 221
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 222 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 281
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 282 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 323
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 324 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 345
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 346 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 405
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 406 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 449
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 450 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 499
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 500 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 555
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 556 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 614
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 615 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 654
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 655 AGMSDYLAKPIEEERLHNLLLRY 677
>gi|300920361|ref|ZP_07136798.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 115-1]
gi|432535150|ref|ZP_19772117.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE234]
gi|300412624|gb|EFJ95934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 115-1]
gi|431059004|gb|ELD68380.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE234]
Length = 918
Score = 256 bits (653), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMGDYLAKPIEEERLHNLLLRY 784
>gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii]
gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
Length = 1610
Score = 256 bits (653), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 207/651 (31%), Positives = 302/651 (46%), Gaps = 109/651 (16%)
Query: 572 TAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSH 631
TA+ S GVV L +G I + H + E + A A K+ FLAT+SH
Sbjct: 1040 TALRDSDGVVTGFLAMG-------KDITSRKAAEHALAEARDEALRAAQVKADFLATMSH 1092
Query: 632 EIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691
EIRTPMN ++GM +L+DT L Q ++A + S L++L+ND+LD +KIE+G+L E
Sbjct: 1093 EIRTPMNAIIGMTGLLLDTALTKEQHEFADSVRRSSDGLLTLLNDILDFSKIEAGKLHFE 1152
Query: 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIK 751
+PF L +++ + L + +A KG+EL V VP V+GDPGR RQI+ NLVGN+IK
Sbjct: 1153 QLPFDLRMTVEDTVELLAEQAQSKGLELIGLVDAAVPTAVVGDPGRLRQILVNLVGNAIK 1212
Query: 752 FTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWE 811
FT G +F +H+ + + +D+ ++ +T G P + + +
Sbjct: 1213 FTA-AGEVF--LHVTRETQGGLDLLRFTIK--------------DTGIGIPEAVQGRLFH 1255
Query: 812 NFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGL 871
F D++ T+R +GGTG+GL
Sbjct: 1256 AFVQADSS----------------------------------------TTRRFGGTGLGL 1275
Query: 872 SISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRAL 931
+I + LV M G+IG S G GSTF FT F E + + S RG R L
Sbjct: 1276 AICQRLVSQMHGQIGVESHSGQGSTFWFTAQFPETTLATAPSPFSW-----SRLRGRRIL 1330
Query: 932 VIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDK 991
++D + R L M VA S A L+ T + S P L LI+ + D
Sbjct: 1331 LVDHCDTVRQAMRQELTSHGMNCTVAQSGPEAVE-LARTAAASQNP-FDLALIELHLSDM 1388
Query: 992 EIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS- 1050
+ G +LKQ G+ ++ +L T D +S GI LTKPLR +
Sbjct: 1389 D-GFETAALLKQGPATAGI-------RLIILTTVGRRGDGQTARSIGIDAYLTKPLRQAQ 1440
Query: 1051 -VLIGCFQEDPESSKKLQQKRKKPSL--GHLLKGKQ------ILVVDDNMVNRRVAEGAL 1101
+ C PES+ + P+L H L Q +L+ +DN VN++VA L
Sbjct: 1441 LLECLCLLLAPESTAGTPPNAEPPALITRHTLSESQAGPKPRLLLAEDNPVNQKVACKML 1500
Query: 1102 KKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161
+K G V G+ AV + MD QMPE+DGF+AT IR +E
Sbjct: 1501 EKLGYRVDVAGNGQEAV-AAHERSRYPLILMDCQMPEVDGFEATALIRKME--------- 1550
Query: 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
G S+ H PI+AMTA+ +Q E+C+ GMDDY++KP ++L
Sbjct: 1551 GRSA----------HTPIVAMTANAMQGDRERCLAAGMDDYIAKPVRPKEL 1591
>gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
Length = 1325
Score = 256 bits (653), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 196/625 (31%), Positives = 296/625 (47%), Gaps = 112/625 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ E K A+A AK FLA +SHEIRTPMN +LGM + ++T+LDA Q Y +
Sbjct: 591 QELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINE 650
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S K+L+ +IND+LD +KIE+G+L+ E + F L DVLDNV ++ S KA +KGIE + +
Sbjct: 651 SAKNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDP 710
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P +IGDP R Q++ NL GN++KFTQ +G I +S + +V + V + +
Sbjct: 711 HIPLGLIGDPLRLGQVMVNLCGNAVKFTQ-QGEIVISARVRQLNEQQVMLLFAVKDTGIG 769
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
Q K ++N F DN+ T
Sbjct: 770 IAQEKLSDLFNA---------------FSQADNSIT------------------------ 790
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ----------------RQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGL 834
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
E K + + R LV+DD + A ++ +S+ A
Sbjct: 835 QE-----AKMRDIAQPLHGLANKRVLVVDDN--------------DSARNILDSLLTAMR 875
Query: 966 YLSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
+ T S L +L D D + + L + + GL R+ K FL+
Sbjct: 876 FNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNGIELLTRVKSLGL---RDHTKCFLVT 932
Query: 1024 TSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQ-QKRKKPSLGHL 1078
+ + D S I L+ KP+ L ++ + D K+ + + +P+
Sbjct: 933 AYGRDINLDSENSKLIDALIVKPVNPSNLLDAIVTSYGIDHVRHKQNELPQHSRPN---- 988
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
G+++L+V+DN VN+ VA G L++ G VT + G+ A++KL +FD MD+QMP
Sbjct: 989 FTGQKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENA-DFDLVLMDMQMPV 1047
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKC 1197
MDG AT IR G W ++PI+AMTA+ + E+C++
Sbjct: 1048 MDGITATKYIR---------------------TNGRWKNLPIVAMTANAMATDIERCLQV 1086
Query: 1198 GMDDYVSKPFEDEQLYTAVARFFMS 1222
GM+ ++SKP E ++ Y + +F S
Sbjct: 1087 GMNGHLSKPIEVDKFYQVLKQFLKS 1111
>gi|432544398|ref|ZP_19781238.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE236]
gi|432549888|ref|ZP_19786653.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE237]
gi|431073333|gb|ELD80984.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE236]
gi|431079056|gb|ELD86035.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE237]
Length = 763
Score = 256 bits (653), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 114 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 173
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 174 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 233
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 234 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 275
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 276 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 297
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 298 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 357
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 358 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 401
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 402 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 451
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 452 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 507
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 508 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 566
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 567 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 606
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 607 AGMSDYLAKPIEEERLHNLLLRY 629
>gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1548
Score = 256 bits (653), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 196/642 (30%), Positives = 312/642 (48%), Gaps = 119/642 (18%)
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
A+ I+ + E+ K AE A KS FLA +SHEIRTPMN ++GM + + TEL
Sbjct: 719 GALRDISLRKRSEAELRRAKEMAEEATRLKSDFLANMSHEIRTPMNAIIGMAHLALKTEL 778
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
D Q DY + SG+ L+ ++ND+LD +KIE+G+L E F L VLD V +L S KA
Sbjct: 779 DPRQADYVRKIRASGQHLLGILNDILDFSKIEAGKLTVENTEFELETVLDTVANLVSEKA 838
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
KG+E + V+ VP V L G+ ++ G I ++
Sbjct: 839 ATKGLEFVLDVAANVPPV--------------LRGDPLRL----GQILIN---------- 870
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
+ ++ V T G V+ + + L+ +T + L
Sbjct: 871 ----------------YANNAVKFTEHGEIVI-------HVETLETGDT-----DVLLRF 902
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
V DTG+G+ E + R+F F QAD+ST+R YGGTG+GL+I++ L +LMGG +G S PG
Sbjct: 903 AVRDTGIGLTDEQKARLFVSFQQADTSTTRKYGGTGLGLAIAKKLADLMGGGVGVDSVPG 962
Query: 893 TGSTFSFTVTFTEGE-RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
GSTF FT G R +L P+ + RGLR LV+DD V + L+ +
Sbjct: 963 GGSTFWFTARLGLGSGRRALLPRI--------DLRGLRVLVVDDNPQARMVLAHMLEGMT 1014
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
+A+ + A L + +D D G+V ++ Q GLE
Sbjct: 1015 FRPVMADGGETALDLLREA---------------RDA-DTPFGMV--FLDWQMPGMDGLE 1056
Query: 1012 ISRNLPKIF--LLATSISETDRDEL----KSDGIVTLLTKPLRLSV-------LIGCFQE 1058
+RN+ + L ++ R+E+ + G+ +L KP++ S+ L+G
Sbjct: 1057 TARNIRTLAPDLPVAIVTAHGREEIFAASEGVGVSAVLVKPVQPSLLFDTAMRLLGAVHP 1116
Query: 1059 DPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
P ++ R P++ ++G ++L+V+DN +NR VA G L + G + + G AV
Sbjct: 1117 APRAAVPPPDTR--PAMLDGVRGSRVLLVEDNELNREVALGLLAEAGLVPDAAEDGAQAV 1174
Query: 1119 DKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
++ ++D MD+QMP MDG++AT IR S E+ + +P
Sbjct: 1175 -RMVMEGDYDLVLMDVQMPVMDGYEATRIIRR----------SREADS----------LP 1213
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
I+AMTA+ +++ E C+ GM+D+V+KP + ++L+ A+ R+
Sbjct: 1214 IVAMTANAMRSDREACLAAGMNDHVAKPIDPDELFAALIRWL 1255
>gi|190892952|ref|YP_001979494.1| two-component sensor histidine kinase/response regulator hybrid
protein [Rhizobium etli CIAT 652]
gi|190698231|gb|ACE92316.1| probable two-component sensor histidine kinase/response regulator
hybrid protein [Rhizobium etli CIAT 652]
Length = 1126
Score = 256 bits (653), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 205/653 (31%), Positives = 304/653 (46%), Gaps = 124/653 (18%)
Query: 584 TLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGM 643
T+ G + A + ++++ E+ EL +RAEAAD AKS+FLA +SHEIRTPMNGVLGM
Sbjct: 554 TVSTGQHWVALFTDVTELKSREEELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGM 613
Query: 644 LQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDN 703
++L T LD Q + SG L+++IND+LD +KI++G+++ F + + +++
Sbjct: 614 AELLAKTNLDTRQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVED 673
Query: 704 VLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
V +L SS A +K IEL + + +P VIGD GRFRQI+TNLVGN++KFT+ +GH+FV V
Sbjct: 674 VATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTE-RGHVFVDV 732
Query: 764 HLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME 823
GF V + N ++ D
Sbjct: 733 ------------------------------------GFETVAGGEIMANIRIED------ 750
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
TG+GIP E +F F Q D+S++R + GTG+GL+I+ LV+L GG
Sbjct: 751 -------------TGIGIPEEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGG 797
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
I S+ G GS F+ + F + L+PK P +G R LVIDD EV
Sbjct: 798 YIKVESQWGEGSVFTVNLPFAVAAAH-LEPK-----PLPINVQGARILVIDDN----EVN 847
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
R L + QL+ + LA++ D+ ++L Y +
Sbjct: 848 RRIL-----------TEQLSLWGFDGVAAEGGGTGLAILEAAADLGVTVDAVILDYHMPD 896
Query: 1004 QRRKGGLEISR---------NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIG 1054
G +++R LP IFL + IS T+++ +G L+ KP R +VL
Sbjct: 897 MN---GADVARRLRADPRFVELPIIFLTSMDISGTEKEFAALNGQAHLM-KPARANVLRN 952
Query: 1055 CF----------QEDPESSKKLQQKRKKPSLGHLLKGK-----QILVVDDNMVNRRVAEG 1099
Q +LQ + P+ + + +LV +DN VN+ V
Sbjct: 953 TVVEVVRARRVKQASQAEIARLQAETSVPAPVPAPQKRAADFVDVLVAEDNEVNQIVFTQ 1012
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
L+ G V+ G AV H MD+ MP M+G +AT IR E
Sbjct: 1013 ILQGTGLSFLVVNNGEQAVAAWE-SHTPRIIMMDVSMPVMNGHEATRTIREKEK------ 1065
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
G+S VPI+ +TA +++ E C+ GMDDY+SKP E L
Sbjct: 1066 --GQSQ----------RVPIIGVTAHALESGREACLDAGMDDYMSKPISPELL 1106
>gi|419176305|ref|ZP_13720119.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC7B]
gi|378031511|gb|EHV94098.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC7B]
Length = 918
Score = 256 bits (653), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKQLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|13472804|ref|NP_104371.1| two-component sensor/response regulator hybrid [Mesorhizobium loti
MAFF303099]
gi|14023551|dbj|BAB50157.1| two-component sensor/response regulator hybrid [Mesorhizobium loti
MAFF303099]
Length = 760
Score = 256 bits (653), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 189/641 (29%), Positives = 294/641 (45%), Gaps = 116/641 (18%)
Query: 588 GHIFHAAINR-IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQM 646
G H AI R I + ++ + RAE A AKS+FLATVSHEIRTPMNG++GM ++
Sbjct: 218 GAASHRAIARDITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARL 277
Query: 647 LMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLS 706
L DT L Q Y S L++LI D+LD +KIE+GR +PE P + ++ DN++
Sbjct: 278 LADTSLSPEQQTYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQPMSVREIADNIIE 337
Query: 707 LFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766
L +++A K I L +V VP+++ DPGR RQ++ NL+GN+IKFT D G + VS+
Sbjct: 338 LLAARAFAKDIGLGCHVEPDVPQLITADPGRVRQVLLNLIGNAIKFT-DGGGVLVSI--- 393
Query: 767 DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG 826
R++ + D++ + +T G D + +E F+ D T+T
Sbjct: 394 --ARARSETSDRICF-----------TITDTGPGLREEDMERIFEEFEQADGTST----- 435
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
R +GG G+GL+IS+ LV MGG I
Sbjct: 436 -----------------------------------RAHGGAGLGLAISKRLVAAMGGTIS 460
Query: 887 FVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH 946
S G GS F F + TE P+ +Q V G RA+++ ++ A+
Sbjct: 461 VSSRLGQGSEFVFEIPATEATEA---PQGRQNV-----LAGRRAVILSRNAVEADAIART 512
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
++ +A ++ A L++ C ++L+D + + + +LK+ R+
Sbjct: 513 IRANGGTAGIATTVAQAAP-LAEGCD--------VLLVDAAMEESD-----GRVLKRLRQ 558
Query: 1007 KGGLEISRNLPKIFLLATSISETDR---DELKSDGIVTLLTKPLRLSVLIGCF--QEDPE 1061
G + T I+ TDR E ++ G T L +P+R L+ P
Sbjct: 559 SGFTDCE--------AITLIAPTDRGMLGEFRASGYATFLARPVRGGTLLRVLLTSHAPA 610
Query: 1062 SSKKLQQKRKKPSL---GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
++ +KR+ P+L +G +L+ +DN +N +A L K G V V G+AAV
Sbjct: 611 LAQPQPEKRRTPALRASSDRQQGLSVLIAEDNDINAMLARATLLKAGHRVKVVGNGKAAV 670
Query: 1119 DKLTPP---HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
+ +T H FD MDL MP MDG A IR E E +
Sbjct: 671 EAVTGAGHKHRFDVVLMDLHMPVMDGLDAIAAIRRHEEETSAP----------------- 713
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
VPI+ ++AD + + + G +V+KP + + L AV
Sbjct: 714 PVPIMVLSADSQEKTRHAVLAHGASGFVTKPLDPDALVNAV 754
>gi|420337927|ref|ZP_14839489.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
K-315]
gi|391259801|gb|EIQ18875.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
K-315]
Length = 918
Score = 256 bits (653), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 292/623 (46%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDRMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLISALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|158333448|ref|YP_001514620.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158303689|gb|ABW25306.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
Length = 755
Score = 256 bits (653), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 195/599 (32%), Positives = 281/599 (46%), Gaps = 98/599 (16%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
K FLA +SHEIRTPMNGV+GM +L+DTEL Q +Y +T SG L++LIND+LD +
Sbjct: 236 KDDFLAMMSHEIRTPMNGVIGMTGLLLDTELTPQQQEYTETIRKSGDSLLTLINDILDYS 295
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+L+ E F++ +++ L L +S+ K IELA V VP+ ++GD R RQI
Sbjct: 296 KIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIELAGVVEPDVPQAILGDVTRLRQI 355
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL+GN+IKFT +S +V +S
Sbjct: 356 LVNLLGNAIKFT------------------------------------QSGEVVVNVSAE 379
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
P +E L V DTG+GIP E Q R+F F Q DSST+
Sbjct: 380 PFAADTPLYE------------------LSFAVRDTGMGIPAERQNRLFKSFSQVDSSTT 421
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R +GGTG+GL I + L ELMGG I SE G GSTF+FT+ E E ++ Q +P
Sbjct: 422 RKFGGTGLGLVICKRLSELMGGRIWVESEEGQGSTFAFTIQAEETEDTTV---LAQSLPA 478
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
V+ + R L++DD V + +M VA S A L +
Sbjct: 479 VT-LKDKRVLLVDDNDTNQRVLTLQTESWKMKPQVAASGYEALGLLEHAGP------FDI 531
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVT 1041
++D + + + GL L ++ R N P + L TSI + D G+ +
Sbjct: 532 AILDMQMPEMD-GLTLAQKIRSHPR------GVNFPMVML--TSIGQAP-DLAHHKGLFS 581
Query: 1042 L-LTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK---QILVVDDNMVNRRVA 1097
L KP++ S L + ++ QK L + + +IL+ +DN VN+++A
Sbjct: 582 AWLNKPIKQSQLYSALVKSLTGNEVKTQKSTTLQLDTEMADQHPLKILLAEDNPVNQKLA 641
Query: 1098 EGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE 1157
L K G V G + L ++D MD+ MPEMDG AT I +
Sbjct: 642 VLILAKMGYRPDVVGNGLEVLQALK-RQSYDVILMDVNMPEMDGLTAT-------THIYQ 693
Query: 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
I E I+AMTA+ +Q E+C+ GMDDYV+KP ++L A+
Sbjct: 694 SIMPEERPR------------IIAMTANAMQGDREKCLDVGMDDYVTKPINIQELVVAL 740
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
LK K++L+VDDN N+RV + G A+ L FD +D+QMPE
Sbjct: 481 LKDKRVLLVDDNDTNQRVLTLQTESWKMKPQVAASGYEALGLLEHAGPFDIAILDMQMPE 540
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG +IR +N P++ +T+ + QA + K
Sbjct: 541 MDGLTLAQKIRSHPRGVN--------------------FPMVMLTS-IGQAPDLAHHKGL 579
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
+++KP + QLY+A+ +
Sbjct: 580 FSAWLNKPIKQSQLYSALVK 599
>gi|428216794|ref|YP_007101259.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427988576|gb|AFY68831.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 797
Score = 255 bits (652), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 189/599 (31%), Positives = 294/599 (49%), Gaps = 111/599 (18%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS FLA +SHEIRTPMN VLGM ++++ T+L Q D+ + SG L++LIN++LD +
Sbjct: 270 KSLFLANMSHEIRTPMNAVLGMTELMLGTDLTPEQFDFVENIRISGDSLLNLINEILDLS 329
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
K+E+G ++ E + F L ++ V +L +++A+ KG+E+ + +P V GD R RQI
Sbjct: 330 KLEAGEMQLERLSFDLVSCVEEVATLLAAQAHNKGLEITTLIDPAIPWRVSGDSARLRQI 389
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+TNL+GN+IKFT + G + + V N LS
Sbjct: 390 LTNLLGNAIKFT-NAGEVAIEV--------------------------------NILS-- 414
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
+Q IKL V DTG+GI Q ++F PF Q D+ST+
Sbjct: 415 ---------------------QQHDLIKLAFAVIDTGIGISQPNQDKLFMPFSQVDASTT 453
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R YGGTG+GL+I + LV LMGGEIG SE G G+ F F + F + D ++
Sbjct: 454 RRYGGTGLGLAICKQLVHLMGGEIGVESELGEGTRFWFNLPFDLHQAAQPDFNQLSFILH 513
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
S G R LV+DD + + ++ V A++ A + L ++ T L
Sbjct: 514 -SSLAGKRFLVVDDNANSRQAIVRQAANWDVVVAEADNGGSALAMLRESVQTEA--TYDL 570
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT---SISETDRDELKSDG 1038
VLID + D GL L +K + E NL +F+ + S++ D +D
Sbjct: 571 VLIDSVLGDMS-GLDLAAQIKAE------EALSNLQLVFITRSNQGSLARLALDRYFADH 623
Query: 1039 IVTLLTKPLRLSVLIGCFQE------DPESSK-----KLQQKRKKPSLGHLLKGKQILVV 1087
+TKP++LS L + DP S+ ++++++++ +L +IL+
Sbjct: 624 ----MTKPVKLSKLAETLRHVLNLDLDPTLSEILPAAEVKRQQQRTNL-------KILLA 672
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN+VN++VA L+K G G+ + +L N+D MD QMP +DG+ T +
Sbjct: 673 EDNLVNQKVALKMLEKLGYKADVAQNGQQVL-QLMARTNYDLILMDCQMPLLDGYATTQE 731
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
IR+ E E H I+AMTA+ ++ ++C+ GMDDY+SKP
Sbjct: 732 IRNREGENR-------------------HTVIVAMTANAMKEDRQKCLDAGMDDYISKP 771
>gi|383761056|ref|YP_005440038.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381381324|dbj|BAL98140.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 1523
Score = 255 bits (652), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 197/616 (31%), Positives = 311/616 (50%), Gaps = 96/616 (15%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
EL A+AE A+ AKS+FLA +SHEIRTPMNGV+GM +L++TEL+ Q Y +T +SG+
Sbjct: 994 ELAAQAEQANRAKSEFLANMSHEIRTPMNGVIGMTGLLLETELNEEQRRYVETIRSSGET 1053
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+++IND+LD +KIE+G+LE E + F L D+LD+ + + KA +K +E P
Sbjct: 1054 LLAIINDILDISKIEAGKLELETLDFDLIDLLDDFAATLAVKAQEKRLEFICAADPETPR 1113
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
+ GDPGR RQ++TNL N+++FT +KG + V V V ++ V + + +
Sbjct: 1114 HLRGDPGRLRQVLTNLAANALRFT-EKGEVSVRVSPVRMTEGDVTLRFVVRDTGIGIPKE 1172
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
K ++ E F +D
Sbjct: 1173 KLPSIF---------------EKFVQVD-------------------------------- 1185
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
+ST+R YGGTG+GL+IS+ LVELMGGEIG SE G GSTF FTV
Sbjct: 1186 --------ASTTRRYGGTGLGLAISKRLVELMGGEIGVESEVGRGSTFWFTVKLLRQSGV 1237
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
P +PD G+R L++DD + E+ R L M A A L +
Sbjct: 1238 EQKPS----LPDT--LHGIRVLIVDDNATNREILRTQLSAWGMEPDEAEDAAAALRKLEE 1291
Query: 970 TCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
+LA++ D+ EI G++L ++ R LE + ++++ +
Sbjct: 1292 ALQEGKPYRLAIL----DLQMPEIDGIMLGRQIRSDERFRSLE-------LIMMSSMGQD 1340
Query: 1029 TDRDELKSDGIVTLLTKPLRLSVLIGCFQED-PESSKKLQQK--RKKPSLGHL-LKGKQI 1084
+ + ++G L KP+R S L ++ +++ +L K KP + L ++
Sbjct: 1341 GEARNVLNNGFAAYLMKPVRQSDLFNTVRQVLAQNALRLGGKSSENKPVIPKLSTPNVRV 1400
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
LV +DN VN++VA G L++ GA V G +++ L +D MD+QMP+MDG +A
Sbjct: 1401 LVAEDNAVNQQVALGILRRMGAHAEVVGSGAESIEALQ-QAPYDIVLMDVQMPDMDGLEA 1459
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T +IR+ E +GE++ + +PI+AMTA +Q+ ++C+ GM+DYVS
Sbjct: 1460 TRRIRNGE--------AGETARD---------IPIIAMTAHALQSDRDRCLAAGMNDYVS 1502
Query: 1205 KPFEDEQLYTAVARFF 1220
KP ++L+ + ++
Sbjct: 1503 KPVRPQELHQVLEKWL 1518
>gi|331654269|ref|ZP_08355269.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M718]
gi|331047651|gb|EGI19728.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M718]
Length = 918
Score = 255 bits (652), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLPMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
Length = 1349
Score = 255 bits (652), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 201/641 (31%), Positives = 291/641 (45%), Gaps = 134/641 (20%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ K +AEAA K++FLA +SHEIRTPMNGV+GM +L+DTEL Q DYA T S
Sbjct: 769 ELNRAKEQAEAASRHKTEFLANMSHEIRTPMNGVIGMTGLLLDTELTTEQRDYAGTVRRS 828
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G+ L++LIND+LD +K+E+G+L E F L ++ V + + K + ++L +
Sbjct: 829 GESLLTLINDILDFSKVEAGKLAIEASAFDLRSTIEEVDEMLAPKIENRKLDLVLQYPVG 888
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV--HLADDVRSKVDVKDKVLEKSL 784
P +GD GR RQ++TNLVGN+IKFT + G I + V D+ R+ + V
Sbjct: 889 APRHFVGDAGRIRQVVTNLVGNAIKFTGE-GSIVIEVVCESQDEARAVMRV--------- 938
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
+++T G P +E F LD
Sbjct: 939 --------AIHDTGPGIPSEKIGSLFEKFSQLDG-------------------------- 964
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
ST+R YGGTG+GL+IS+ LV LMGG + S G GSTFSFT+
Sbjct: 965 --------------STTRKYGGTGLGLAISKQLVSLMGGSMAVSSRLGEGSTFSFTLPLP 1010
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
+ ++P + RGLRAL++DD E+ R L + + N A
Sbjct: 1011 LDANSPVEPL------TAAGLRGLRALIVDDN----EINRRVLHEQIIGWGMRNGSFAAG 1060
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG--GLEISRNLPK---- 1018
+ ALV + G H+ + R G G+E++R +
Sbjct: 1061 -------------EEALVALRA---AHAAGDPYHFAILDYRMPGMDGVEVARAIKADDEL 1104
Query: 1019 ---IFLLATSISETDRDELKSDGIV-TLLTKPLR----LSVLIGCFQEDPESSKKLQQKR 1070
+ +L TS+ + K GIV L KP+R L++L C+ S R
Sbjct: 1105 RETVVVLLTSVGQWSEARQKESGIVDASLVKPVRQSQLLNILSSCWVRT-NSITAAPAVR 1163
Query: 1071 KKPSLGHLLKG---------KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD-- 1119
+P + + ++LV +DN+VN++V+ L K G GR AV
Sbjct: 1164 PEPPVNEMRAALALRFGGVPVRVLVAEDNVVNQKVSARMLDKLGIRADVAADGREAVALF 1223
Query: 1120 KLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPI 1179
L P +D FMD QMPEMDG+ AT +IR E VPI
Sbjct: 1224 GLVP---YDLIFMDCQMPEMDGYAATREIRRREGPGR-------------------RVPI 1261
Query: 1180 LAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
AMTA+V+ E C+ GMDD++ KP + E L+ + R+
Sbjct: 1262 AAMTAEVLGGCRELCLAAGMDDHIPKPVKMEVLFETLRRWI 1302
>gi|420374930|ref|ZP_14874855.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
1235-66]
gi|391315046|gb|EIQ72580.1| signal transduction histidine-protein kinase BarA [Shigella flexneri
1235-66]
Length = 888
Score = 255 bits (652), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 192/626 (30%), Positives = 303/626 (48%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 239 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQR 298
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD+V++L + ++ KG+
Sbjct: 299 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGL 358
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 359 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 400
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 401 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 422
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 423 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 482
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR-YHLQRLEMAVHV 956
F ++ L+P VI D+S TR +RL
Sbjct: 483 WFHISL------DLNPN-----------------VISDRS----TTRCLAGKRLAYVEPN 515
Query: 957 ANSMQLACSYLSDTCSTSVL-PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
A + Q LS+T + P AL D+ + + H L Q + L +
Sbjct: 516 ATAAQCTLDILSETPLEVIYSPSFSALPAEHYDILLLGVPVTFHEPLTMQHER--LASAA 573
Query: 1015 NLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP 1073
+ LLA ++ + ++LK G L KPL + L+ E ++ + +
Sbjct: 574 AMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCHLNQGAELQLPDE 633
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
S + ++ VDDN N ++ L+ V D G+ A+D+ FD MD
Sbjct: 634 SKIAM----TVMAVDDNPANLKLIGALLEDKVQHVELCDSGQQAMDR-AKQMQFDLILMD 688
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 689 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 728
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+++L++ + R+
Sbjct: 729 LLSAGMNDYLAKPIEEDKLHSLLLRY 754
>gi|395761501|ref|ZP_10442170.1| multi-sensor hybrid histidine kinase [Janthinobacterium lividum PAMC
25724]
Length = 966
Score = 255 bits (652), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 193/607 (31%), Positives = 289/607 (47%), Gaps = 97/607 (15%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS FLAT+SHEIRTPMNGVLGM ++L+ + L Q Y SG++L+ +IND+LD
Sbjct: 298 AKSAFLATMSHEIRTPMNGVLGMTELLLASALSPQQRHYTSMVQRSGQNLLVIINDILDF 357
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIE+G+L E++ F+ ++LD++ +F+ +A K I L ++ +P + GDP R RQ
Sbjct: 358 SKIEAGKLSVEYIRFNFRELLDDIEHVFTPQAEAKNISLEFDIAFDIPIAICGDPYRLRQ 417
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
II NL+GN+IKFT+ KV VK V + V + + V++T G
Sbjct: 418 IIVNLLGNAIKFTET---------------GKVTVKVAVCSEDAPGVGLRFE-VHDTGIG 461
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
+ + +E+F D ST
Sbjct: 462 VSNEAQARIFESFSQADG----------------------------------------ST 481
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
+R +GGTG+GL+IS+ LVELMGG IG + GS F F V F + +S DP +
Sbjct: 482 TRKHGGTGLGLTISKQLVELMGGTIGVDNALTQGSIFWFEVNFDKRRVDSDDPSF----- 536
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH-VANSMQLACSYLSD-TCSTSVLPQ 978
++ RGLRAL++D TR L+R + H V++S A L +
Sbjct: 537 NLKTTRGLRALIVD----HTPATRAVLERQLASWHIVSDSADTASDCLRKLRAAAQAGTP 592
Query: 979 LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDG 1038
A+ L+D ++ + GL L +K + K+ LL+T + D + + G
Sbjct: 593 YAVALLDMEL-PRTSGLALAATIKS-------DPLLAELKLLLLSTQRTAADPVQRREAG 644
Query: 1039 IVTLLTKPLRLSVLIGCFQEDPESSKKLQ---QKRKKPSLGH--LLKGKQILVVDDNMVN 1093
+ L KP R L C P + L+ +P++ H + +++L+ +DN VN
Sbjct: 645 VAFQLIKPARECDLFDCIVTPPRAGDSLRLVAPHAARPAVRHPGRRQRRRVLLAEDNHVN 704
Query: 1094 RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLEN 1153
VA L G V C G A+ + +FD MD QMP MDGF AT +IR E
Sbjct: 705 VEVALAMLDSLGLDVVCARNGEEAL-QAAQAEDFDLILMDCQMPVMDGFAATAEIRRHEQ 763
Query: 1154 EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLY 1213
+ +PI+A+TA+ +Q E C+ GMDDY+SKPF + L
Sbjct: 764 QCGHARV----------------LPIVAITANALQGDREACLAAGMDDYLSKPFTQQDLG 807
Query: 1214 TAVARFF 1220
+AR+
Sbjct: 808 HTIARWI 814
>gi|268679547|ref|YP_003303978.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
gi|268617578|gb|ACZ11943.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
Length = 2035
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 303/623 (48%), Gaps = 115/623 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K+ AE A KS FLA +SHEIRTPMN ++GM + + TEL Q +Y ++ K L+
Sbjct: 1302 KSLAEEATQVKSAFLANMSHEIRTPMNAIIGMAHLALQTELSNQQRNYLVKIDSASKHLL 1361
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+IND+LD +KIE+G++ E + F+L DV++++ L KA +KG+EL + +P +
Sbjct: 1362 GIINDILDFSKIEAGKMRFESIDFYLEDVMEHLADLSVMKAQEKGLELLFDIETNIPTAL 1421
Query: 732 IGDPGRFRQIITNLVGNSIKFT-QDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHK 790
GDP R QI+ NLV N+IKFT Q + +FV K+L + V H
Sbjct: 1422 RGDPLRLGQILINLVNNAIKFTAQGEIRLFV----------------KLLAQEAKQV-HL 1464
Query: 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850
+V++T G + K +E F
Sbjct: 1465 LFEVHDTGIGIDEAQQAKLFEAFS------------------------------------ 1488
Query: 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNS 910
QAD ST+R +GG+G+GL+I + LVE+M G+I S G GSTFSF+ F E +
Sbjct: 1489 ----QADLSTTREFGGSGLGLAICKHLVEMMQGKIWVKSTLGEGSTFSFSAQF-ELQEEQ 1543
Query: 911 LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDT 970
P++ + R LR L++DD + E+ L+ VH A S L +
Sbjct: 1544 KKPQFND-----EDVRNLRILIVDDNASAREILENILRSFHFNVHSVCDGHHALSLLKEA 1598
Query: 971 CSTSVLPQ-LALVLIDKDVWDKEIGLVLHYMLKQQR-----RKGGLEISRNLPKIFLLAT 1024
PQ LVLID +M+ Q RK EI + P +F++ T
Sbjct: 1599 QKE---PQPYNLVLID-------------WMMPQLNGIETIRKIREEIVSDQPLMFIMIT 1642
Query: 1025 SISETDRDELKSDGIVT-LLTKPLRLSVLIGC-FQEDPESSKKLQQKRKKPSLG----HL 1078
+ S+ + + + V +L KP+ S L+ + +L +K K +L H
Sbjct: 1643 AYSKEELQKELEELFVDGILIKPISPSTLLNTILNVLGKEVMRLSRKEDKQALYRESIHA 1702
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L+G ++L+V+DN++N+ +A+ L++ G + + G+ A++ + +FD MD QMP
Sbjct: 1703 LRGAKVLLVEDNIINQEIAKEILEREGMDIVVANHGKEALEWIE-KESFDGVLMDCQMPV 1761
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDGF+AT +R G +PILAMTA+ ++ E+C+ CG
Sbjct: 1762 MDGFEATRLMRE----------------------GGHTLPILAMTANAMEGDKERCLACG 1799
Query: 1199 MDDYVSKPFEDEQLYTAVARFFM 1221
M+D++SKP + +L+ +A++ +
Sbjct: 1800 MNDHISKPIDMAKLFITMAKWIV 1822
>gi|170765863|ref|ZP_02900674.1| sensor histidine kinase/response regulator BarA [Escherichia albertii
TW07627]
gi|170125009|gb|EDS93940.1| sensor histidine kinase/response regulator BarA [Escherichia albertii
TW07627]
Length = 918
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 193/627 (30%), Positives = 300/627 (47%), Gaps = 116/627 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLP--QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
+ L Y + S S LP ++L+ V +E + H L + + +
Sbjct: 557 SETPLEVIY---SPSFSALPPEHYDMMLLGIAVTFREPLTMQHARLLK---------AVS 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK-- 1072
+ +LA ++ + ++LK DGI L KPL + L+ P ++ QK+
Sbjct: 605 MADYLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLL------PALTEFCHQKQNTLL 658
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
P ++ VDDN N ++ L+ V D G AV++ FD M
Sbjct: 659 PVNDERKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILM 717
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP+MDG +A I L ++ P++A+TA + E
Sbjct: 718 DIQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKE 757
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ + GM DY++KP E+E+L+ + R+
Sbjct: 758 KLLGAGMSDYLAKPIEEERLHNLLLRY 784
>gi|432490591|ref|ZP_19732456.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE213]
gi|432840617|ref|ZP_20074078.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE140]
gi|433204514|ref|ZP_20388273.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE95]
gi|431019139|gb|ELD32553.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE213]
gi|431387761|gb|ELG71581.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE140]
gi|431718667|gb|ELJ82738.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE95]
Length = 918
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGVLLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|410724306|ref|ZP_11363504.1| PAS domain S-box [Clostridium sp. Maddingley MBC34-26]
gi|410602311|gb|EKQ56792.1| PAS domain S-box [Clostridium sp. Maddingley MBC34-26]
Length = 949
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 189/624 (30%), Positives = 304/624 (48%), Gaps = 115/624 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + K AEAA++AKSQFLA +SHEIRTP+NG+ G L++L + L Q ++ + A ++
Sbjct: 312 ELYKAKVEAEAANIAKSQFLANMSHEIRTPINGIFGFLELLETSNLSLEQKEFIREAKSA 371
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+ +IND+LD +KIE+ +L E + F+L +++ +SL KA KGIEL +
Sbjct: 372 SEMLLYIINDILDFSKIEAKKLTMESIEFNLRTAIEDAVSLLVPKATNKGIELYSMIKAN 431
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VPEVVIGDP RF+Q++ NL+ N++KFT+ G I V++ D ++E+ N
Sbjct: 432 VPEVVIGDPSRFKQVLNNLISNAVKFTES-GEISVAI-------------DCLVEE--NE 475
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ S +V +T G + +++F D + T
Sbjct: 476 IALLSFEVKDTGIGIKAENIPNIFQSFSQADTSTT------------------------- 510
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GL+IS LV++MGGEI S+ G GSTF F V
Sbjct: 511 ---------------RKYGGTGLGLAISSELVKMMGGEICVESKFGEGSTFKFNVKLKIA 555
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+R + +P + + LVIDD + E+ + +LQ + V+ A +
Sbjct: 556 KRVA-EPIYM-----FEKLDHANILVIDDNANNREIVKLYLQENGLKVYEAGDAGSGITT 609
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
+ +T+ +A++ D E+ + Y L + + I++++ I L + +
Sbjct: 610 IISNANTNNKINIAII-------DYEMPGMSGYELANALK--NIPIAKDVKLILLTSYAK 660
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGCF--------------QEDPESSKKLQQKRKK 1072
E + K G + LTKP+R LI C + + ES K Q + K
Sbjct: 661 RECGKS-AKEFGFSSYLTKPIRRDDLIRCVAVALGLKQEEEEEHEIEMESGIKEIQTQLK 719
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
P +IL+V+DN VNR++ LK H G A+ K ++D FM
Sbjct: 720 P---------RILLVEDNEVNRKIFISMLKSHNMDCDVALDGSEAL-KAVSEKDYDIVFM 769
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D QMP MDG+++T +IR LE G+ H I+A+TA+ ++ +
Sbjct: 770 DCQMPVMDGYESTAKIRQLE---------GDKK----------HTKIIAVTANAMEGDSV 810
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAV 1216
+C+K GMDDY+SKP + +++ +
Sbjct: 811 KCIKAGMDDYISKPINFDIMFSMI 834
>gi|291086239|ref|ZP_06571413.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
gi|291068626|gb|EFE06735.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
Length = 811
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 188/624 (30%), Positives = 300/624 (48%), Gaps = 110/624 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 162 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQR 221
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD+V++L + ++ KG+
Sbjct: 222 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGL 281
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 282 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-GGNI-----------------D 323
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 324 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 345
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 346 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 405
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F ++ L+P +++D + R + RL A
Sbjct: 406 WFHISL------DLNPN----------------VLVDRSTSRCLAGK----RLAYVEPNA 439
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD-KEIGLVLHYMLKQQRRKGGLEISRNL 1016
+ Q LS+T V+ + + KD +D +G+ + + + L + +
Sbjct: 440 TAAQCTLDILSET-PLEVIYSPSFSGLPKDHYDILLLGIPVTFREPLTMQHERLASAAAM 498
Query: 1017 PKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSL 1075
LLA ++ + ++LK G L KPL + L+ E +L +P
Sbjct: 499 TDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTE----YCQLNHSADQPLP 554
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
++ VDDN N ++ L+ V D G AVD+ FD MD+Q
Sbjct: 555 DESKIAMTVMAVDDNPANLKLIGALLEDKVQHVVLCDSGHQAVDR-ARQMQFDLILMDIQ 613
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 614 MPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLL 653
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARF 1219
GM+DY++KP E+++L+ + R+
Sbjct: 654 SAGMNDYLAKPIEEDKLHNLLLRY 677
>gi|149188199|ref|ZP_01866493.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1]
gi|148837788|gb|EDL54731.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1]
Length = 1205
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 198/652 (30%), Positives = 320/652 (49%), Gaps = 112/652 (17%)
Query: 588 GHIFHAAINRIAQVENDYHEMMELKA--------RAEAADVAKSQFLATVSHEIRTPMNG 639
G IF + I I + N H +E A A+ A+ AKS FLA +SHEIRTPMN
Sbjct: 439 GIIFMSTIVFIVLLANKSHAALEKSADKLAIARDEADYANQAKSDFLANMSHEIRTPMNA 498
Query: 640 VLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699
++GM + + T+L AQ +Y Q S L+ LIND+LD +KIE+G+L+ E V F L +
Sbjct: 499 IIGMSYLALKTDLTKAQRNYIQKVKLSADTLLGLINDILDFSKIEAGKLDIEHVDFRLEN 558
Query: 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHI 759
VLDN+ +L KA+++G+EL I+ S VP + GDP R QI+TNL N++KFT+ +G +
Sbjct: 559 VLDNISNLVGLKASEQGLELLIHTSKDVPTALYGDPLRLGQILTNLANNAVKFTE-QGEV 617
Query: 760 FVSVHLADDVRS-KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDN 818
+++ AD++ + V ++ V + + ++ K++N F D+
Sbjct: 618 KITI-TADNLENDDVTLRFAVSDTGIGMTPEQTQKLFN---------------KFTQADS 661
Query: 819 TNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLV 878
+ T R YGGTG+GL+IS+ L
Sbjct: 662 STT----------------------------------------RKYGGTGLGLAISKELC 681
Query: 879 ELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSI 938
LMGG+I S+ G GSTF FT+ + P VP + L L++DD +
Sbjct: 682 LLMGGDIEVRSQFGEGSTFEFTINMKRSQVLETKPI---VVP--TSLNHLNILIVDDNAS 736
Query: 939 RAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLH 998
+ LQ L +V AN + A L+ + +V+ D + K+ G+ L
Sbjct: 737 ARLIVEDILQSLNFSVRSANGVDSAIDALNHAAQSD--SAFDVVITDWQMPGKD-GVELI 793
Query: 999 YMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV--TLLTKPLRLS----VL 1052
+ ++Q S N PKI +L + D ++ G++ ++L KP+ S +
Sbjct: 794 HAIQQSE-------SLN-PKILMLTAYDRQLLADSVQERGLIVPSILDKPVTASHLFDAI 845
Query: 1053 IGCFQ-EDPESSK-KLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTC 1110
+G + E+ +S+ +L+Q+ ++ H L G +L+V+DN +N+ +A L+ VT
Sbjct: 846 VGLYDIENHRTSRDELEQQTHLANVQH-LAGAHLLLVEDNEINQELAVELLESQNIQVTV 904
Query: 1111 VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFG 1170
G+ A+D L FD MD QMP +DG+ AT IR N +N++
Sbjct: 905 AQNGQVAID-LYKQMTFDGILMDCQMPVLDGYSATEIIR---NTLNDRA----------- 949
Query: 1171 NVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+PI+AMTADV++ E+ + GM+D ++KP + +++ +AR+ S
Sbjct: 950 ------IPIIAMTADVMERDRERAYQSGMNDIIAKPIDVGIMFSTLARWITS 995
>gi|262273705|ref|ZP_06051518.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
gi|262222120|gb|EEY73432.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
Length = 914
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 194/618 (31%), Positives = 289/618 (46%), Gaps = 118/618 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K A+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L ++Q
Sbjct: 263 LEQLEIQNVELDIAKKNAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSSSQQ 322
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY QT S +L+++IND+LD +K+E+G+L E +PF D LD V+ L + A++KG+
Sbjct: 323 DYLQTIEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFEDSLDEVMRLLAPMAHEKGL 382
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + R+P VIGDP R +Q++TNL+GN+ KFT+ +GHI VSV L +D
Sbjct: 383 ELNLRIDPRIPAGVIGDPLRIQQVLTNLIGNATKFTE-RGHINVSVELKQQ-------RD 434
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+ LE L + DT
Sbjct: 435 ERLE------------------------------------------------LQFVIRDT 446
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S SR YGGTG+GL I++ LV+ MGG+IGF S GSTF
Sbjct: 447 GIGISERQQSQLFQAFRQADTSISRRYGGTGLGLVITQKLVQQMGGDIGFSSRLHQGSTF 506
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
FT+T + + + P D +G L+I+ + + R L L ++ +
Sbjct: 507 WFTMTLIKTDLPLVQPI------DAEGLKGQSLLLIEPNAESRHMMRDRLSHL--SIDIV 558
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ +L + +C+ LI D + L M KQ S
Sbjct: 559 DYAELPDNAPFTSCA----------LICVDAAEVPTADTLAAMAKQAE-------SFTDK 601
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKL-----QQKRKK 1072
IF L T+ + L S G+ L KPL + LI Q S L Q K
Sbjct: 602 VIFCLPTTELAL-SESLLSSGVAACLAKPLSVRKLIEQLQGQRHSLAPLPPAVETQTDKV 660
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
P ++ VDDN N ++ LK+ V G+ AV++ FD M
Sbjct: 661 PI--------SVMAVDDNPANLKLITALLKERVTHVVTASDGKQAVEQ-AQTQKFDLILM 711
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV-PILAMTADVIQASN 1191
D+QMPEMDG A +IR + H+ P++A+TA +
Sbjct: 712 DIQMPEMDGVTACHEIRQ---------------------TPMNHLTPVVAVTAHAMSGER 750
Query: 1192 EQCMKCGMDDYVSKPFED 1209
E+ + GMDDY++KP E+
Sbjct: 751 ERLLNEGMDDYLTKPIEE 768
>gi|432890023|ref|ZP_20103069.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE165]
gi|431432897|gb|ELH14573.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE165]
Length = 918
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 292/623 (46%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTE----FYHHKQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|227329138|ref|ZP_03833162.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 931
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 184/630 (29%), Positives = 303/630 (48%), Gaps = 116/630 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQT 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY T S +L+++INDVLD +K+E+G+L E +PF LH+ LD+V+ L + A++KG+
Sbjct: 329 DYLLTIERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VPE +GDP R +QIITNL+GN+IKFT+ + +D++
Sbjct: 389 ELTLSIQNDVPEQFVGDPLRIQQIITNLLGNAIKFTE---------------QGNIDIRV 433
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+ + L+ VQ L V + DT
Sbjct: 434 EKRRQELHQVQ-----------------------------------------LEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F SE GSTF
Sbjct: 453 GIGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F +T L+P P + +G ++ I A+ T + +
Sbjct: 513 WFHITL------PLNPHAIPTEPAYTMLQGKHLAYVEYHPIAAQAT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L SY + + LP+ ++ + + +L Y + + +I R P
Sbjct: 557 SQTPLIVSY---SPTFEQLPEGEFDILLLGIPVQYRNTLLDYTPRLR------DICRRSP 607
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED--------PESSKKLQQK 1069
+ L S+++ D ++LK+ G+ L+KPL S L+ Q+ P+ + Q
Sbjct: 608 CVILALPSLAQMDAEQLKTFGVHACLSKPLAASRLLPLLQDSTLFQFSFLPDDTASHQSA 667
Query: 1070 RKKPSLGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
+ HL + +++ VDDN N ++ L++ + + G+ A+ + + D
Sbjct: 668 AR-----HLARLPLRVMAVDDNPANLKLIGTLLEEQVETIILCESGQDAIAQ-AELNQCD 721
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD+QMP MDG A+ IR + + PI+A+TA +
Sbjct: 722 IILMDIQMPGMDGICASELIRQIPHHAT--------------------TPIIAVTAQTMT 761
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
E ++ GMDDY++KP +++ L + + R
Sbjct: 762 GEREHLLRSGMDDYLAKPIDEQMLKSVLTR 791
>gi|381160225|ref|ZP_09869457.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380878289|gb|EIC20381.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1200
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 185/609 (30%), Positives = 297/609 (48%), Gaps = 100/609 (16%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS FLA +SHEIRTP+N ++G+ +L+ L+ Q ++ + K L+++IND+LD +
Sbjct: 436 KSGFLANMSHEIRTPLNAIMGLTDLLLRGTLEERQREFLTKTKLASKSLLAVINDILDFS 495
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G LE E F LH+++ N+ +F+ +A++KG+EL + ++ P +IGDP R QI
Sbjct: 496 KIEAGHLEIEQTDFSLHELIANLSEMFAYRAHEKGVELVVAIAPGTPTELIGDPTRLSQI 555
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL GN++KFTQ +G + ++ LA SG
Sbjct: 556 LINLTGNALKFTQ-QGEVQITADLAQ------------------------------TSGT 584
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
P + E +KL + V DTG GI E IF F QAD S +
Sbjct: 585 P-----------------GSEEAPDTVKLRLQVRDTGPGIAPERLDAIFEAFAQADGSVT 627
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R +GGTG+GL+I R L LMGG++ S PG GSTF+ T + P +
Sbjct: 628 RRHGGTGLGLAICRRLAHLMGGDVTVASVPGQGSTFTATACLRRQPNRAASP-----LRT 682
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
++ RGLR LV++D + E+ ++ M S + A + L+D + L
Sbjct: 683 PADLRGLRVLVVEDNATSREMLVAQIESFHMRAVAVASGEEALNQLADPAQS-----FDL 737
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVT 1041
VL+D W K G L+ + R + L++ P + +++ E + + +
Sbjct: 738 VLLD---W-KMPG--LNGLETAVRIRQDLKLPHT-PMVCMISAYAREDLLQQSERSVLDA 790
Query: 1042 LLTKPLRLSVLIGCF------QEDPESSKKL----QQKRKKPSLGHLLKGKQILVVDDNM 1091
L KP+ S L Q+ S++ + R+ P L G+++L+V+D
Sbjct: 791 FLHKPVNQSFLFDTIVSLFGHQDAAASTRPVLLAEASDRQPPD----LSGQRVLLVEDIE 846
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
+NR VA L+ + G A++K+ + ++A MD+QMPE+DG +AT +IR
Sbjct: 847 MNRLVALEWLEAARLDTDIAENGLEALNKVR-ENTYNAVLMDIQMPELDGLEATRRIR-- 903
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
E ++ H+PI+AMTA ++ E+C+ GMDDY+SKP + Q
Sbjct: 904 -AEFPDR-----------------HLPIIAMTAHALKGDMERCLAAGMDDYLSKPIDPAQ 945
Query: 1212 LYTAVARFF 1220
L+ A+ R+
Sbjct: 946 LFGALERWL 954
>gi|91212153|ref|YP_542139.1| hybrid sensory histidine kinase BarA [Escherichia coli UTI89]
gi|117625014|ref|YP_854002.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O1]
gi|218559774|ref|YP_002392687.1| hybrid sensory histidine kinase BarA [Escherichia coli S88]
gi|218690909|ref|YP_002399121.1| hybrid sensory histidine kinase BarA [Escherichia coli ED1a]
gi|222157472|ref|YP_002557611.1| Signal transduction histidine-protein kinase barA [Escherichia coli
LF82]
gi|237706586|ref|ZP_04537067.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
gi|331658897|ref|ZP_08359839.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA206]
gi|386600777|ref|YP_006102283.1| sensor histidine kinase/response regulator BarA [Escherichia coli
IHE3034]
gi|386603161|ref|YP_006109461.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146]
gi|387618052|ref|YP_006121074.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str.
NRG 857C]
gi|416336791|ref|ZP_11673261.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327]
gi|417285892|ref|ZP_12073183.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW07793]
gi|419915998|ref|ZP_14434329.1| hybrid sensory histidine kinase BarA [Escherichia coli KD1]
gi|419944637|ref|ZP_14461112.1| hybrid sensory histidine kinase BarA [Escherichia coli HM605]
gi|422356880|ref|ZP_16437553.1| response regulator receiver domain protein [Escherichia coli MS
110-3]
gi|422369450|ref|ZP_16449850.1| response regulator receiver domain protein [Escherichia coli MS 16-3]
gi|422750197|ref|ZP_16804108.1| hsp90-like protein [Escherichia coli H252]
gi|422754447|ref|ZP_16808273.1| hsp90-like protein [Escherichia coli H263]
gi|422840772|ref|ZP_16888742.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H397]
gi|432359100|ref|ZP_19602318.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE4]
gi|432363949|ref|ZP_19607107.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE5]
gi|432442206|ref|ZP_19684544.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE189]
gi|432447321|ref|ZP_19689619.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE191]
gi|432554824|ref|ZP_19791543.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE47]
gi|432574958|ref|ZP_19811433.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE55]
gi|432589087|ref|ZP_19825441.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE58]
gi|432598932|ref|ZP_19835203.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE62]
gi|432617948|ref|ZP_19854058.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE75]
gi|432755637|ref|ZP_19990183.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE22]
gi|432779717|ref|ZP_20013939.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE59]
gi|432788709|ref|ZP_20022837.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE65]
gi|432822145|ref|ZP_20055835.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE118]
gi|432823655|ref|ZP_20057325.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE123]
gi|432899892|ref|ZP_20110402.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE192]
gi|433006236|ref|ZP_20194662.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE227]
gi|433008904|ref|ZP_20197318.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE229]
gi|433015021|ref|ZP_20203360.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE104]
gi|433024604|ref|ZP_20212583.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE106]
gi|433029675|ref|ZP_20217529.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE109]
gi|433154854|ref|ZP_20339790.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE176]
gi|433164739|ref|ZP_20349472.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE179]
gi|433169726|ref|ZP_20354349.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE180]
gi|433325456|ref|ZP_20402550.1| hybrid sensory histidine kinase BarA [Escherichia coli J96]
gi|91073727|gb|ABE08608.1| sensor-regulator, activates OmpR by phophorylation [Escherichia coli
UTI89]
gi|115514138|gb|ABJ02213.1| BarA, sensory histidine kinase; two-component regulator with UvrY
[Escherichia coli APEC O1]
gi|218366543|emb|CAR04296.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli S88]
gi|218428473|emb|CAR09399.2| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli ED1a]
gi|222034477|emb|CAP77219.1| Signal transduction histidine-protein kinase barA [Escherichia coli
LF82]
gi|226899626|gb|EEH85885.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
gi|294490869|gb|ADE89625.1| sensor histidine kinase/response regulator BarA [Escherichia coli
IHE3034]
gi|307625645|gb|ADN69949.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146]
gi|312947313|gb|ADR28140.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str.
NRG 857C]
gi|315289301|gb|EFU48696.1| response regulator receiver domain protein [Escherichia coli MS
110-3]
gi|315298721|gb|EFU57975.1| response regulator receiver domain protein [Escherichia coli MS 16-3]
gi|320194925|gb|EFW69554.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327]
gi|323950997|gb|EGB46873.1| hsp90-like protein [Escherichia coli H252]
gi|323957202|gb|EGB52926.1| hsp90-like protein [Escherichia coli H263]
gi|331053479|gb|EGI25508.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA206]
gi|371605783|gb|EHN94391.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H397]
gi|386251133|gb|EII97300.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW07793]
gi|388382398|gb|EIL44253.1| hybrid sensory histidine kinase BarA [Escherichia coli KD1]
gi|388418028|gb|EIL77850.1| hybrid sensory histidine kinase BarA [Escherichia coli HM605]
gi|430875621|gb|ELB99156.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE4]
gi|430884405|gb|ELC07345.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE5]
gi|430965454|gb|ELC82875.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE189]
gi|430972167|gb|ELC89165.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE191]
gi|431082175|gb|ELD88489.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE47]
gi|431106488|gb|ELE10696.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE55]
gi|431119110|gb|ELE22125.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE58]
gi|431128802|gb|ELE30978.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE62]
gi|431152840|gb|ELE53766.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE75]
gi|431300941|gb|ELF90488.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE22]
gi|431325632|gb|ELG13015.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE59]
gi|431335709|gb|ELG22838.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE65]
gi|431367214|gb|ELG53700.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE118]
gi|431378180|gb|ELG63171.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE123]
gi|431425032|gb|ELH07107.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE192]
gi|431512604|gb|ELH90695.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE227]
gi|431522643|gb|ELH99875.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE229]
gi|431529338|gb|ELI06040.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE104]
gi|431533828|gb|ELI10321.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE106]
gi|431542224|gb|ELI17463.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE109]
gi|431672880|gb|ELJ39114.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE176]
gi|431685570|gb|ELJ51140.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE179]
gi|431686002|gb|ELJ51568.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE180]
gi|432346273|gb|ELL40759.1| hybrid sensory histidine kinase BarA [Escherichia coli J96]
Length = 918
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 292/623 (46%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|239905593|ref|YP_002952332.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239795457|dbj|BAH74446.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1248
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 202/631 (32%), Positives = 300/631 (47%), Gaps = 104/631 (16%)
Query: 604 DYHEMMELK--------ARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAA 655
DY MEL ARA+ A AK FLA +SHEIRTPMNGV+GM +L+DT L
Sbjct: 569 DYANRMELTNKQLNIALARADEAAKAKGDFLANMSHEIRTPMNGVIGMAGLLLDTSLTDE 628
Query: 656 QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQK 715
Q +A+T +SG+ L+ L+ND+LD +KIE+G+LE E V F L +LD+V+ + ++ K
Sbjct: 629 QQRFAETIRSSGELLLLLVNDILDFSKIEAGKLELEIVDFDLVQILDDVMDSMAVGSHSK 688
Query: 716 GIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775
G+EL VP + GDP R RQI++NLVGN+IKFT +G + V V + ++ S +
Sbjct: 689 GLELLCATDPSVPYQLQGDPARLRQILSNLVGNAIKFTV-QGQVSVRVSIVNEKESDCIL 747
Query: 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVE 835
K F V D
Sbjct: 748 K------------------------FSVSD------------------------------ 753
Query: 836 DTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGS 895
TG+GI + QV IF F Q D+ST+R +GGTG+GL+IS+ LVE+MGG IG S G G+
Sbjct: 754 -TGIGIQSDKQVLIFEQFNQVDASTTRKFGGTGLGLAISKRLVEMMGGTIGVESNLGEGA 812
Query: 896 TFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH 955
+F FT +R+S+ + V S F+G R LV+DD E L +
Sbjct: 813 SFWFTACLK--KRDSITE--ESSVCLSSFFQG-RVLVVDDNVTSCENLFTQLNSWGLKTE 867
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
+A A L + ++ ++ + D G+ L ++ R ++I
Sbjct: 868 IAMDGPSALQALYKVINVEDFYKVVIIDVHLPGMD---GVALGQTIRSDHRFDSVKI--- 921
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLR---LSVLIGCFQEDPESSKKLQQKRKK 1072
IF+ TS+ R L+KP+ L ++G F E + +
Sbjct: 922 ---IFM--TSLGGNCRQYCHDVSNADCLSKPVHYRDLRSMLGRFFEVNSCQNRQTENLHG 976
Query: 1073 PSLGHLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
+ H + +IL+ +DN+ N++VA+G L K G V V G AV L +D
Sbjct: 977 SNNEHAFQFSSEWRILLAEDNITNQQVAKGILNKFGLNVDVVSNGLEAVVAL-ESEAYDL 1035
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+ MP +DG AT +I +++ + ++PI+AMTA+V++A
Sbjct: 1036 VLMDMHMPTLDGVAATRRILDGSSKVINR-----------------NIPIIAMTANVLEA 1078
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E+C GM DYVSKP + L +A++
Sbjct: 1079 DREKCFAAGMVDYVSKPVVPQVLADKIAKWL 1109
>gi|90580330|ref|ZP_01236137.1| putative sensor histidine kinase/response regulator [Photobacterium
angustum S14]
gi|90438632|gb|EAS63816.1| putative sensor histidine kinase/response regulator [Vibrio angustum
S14]
Length = 931
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 191/636 (30%), Positives = 293/636 (46%), Gaps = 129/636 (20%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L+ +Q
Sbjct: 266 LEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKLNTSQK 325
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY T NS +L+++IND+LD +K+E+G+L E +PF D LD V+ L + A++KG+
Sbjct: 326 DYLLTIENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGL 385
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + DR+P +IGDP R +Q++TNL+GN++KFT+ G+I VSV L D
Sbjct: 386 ELTLKIDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTE-HGNIDVSVELKSD--------- 435
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+DN I L V DT
Sbjct: 436 --------------------------------------VDNN--------IALQFMVRDT 449
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S SR YGGTG+GL I++ LV MGGE+ S GSTF
Sbjct: 450 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTSRLHQGSTF 509
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA-VHV 956
FT+ + N D Q + D + +G L+++ A V + QRL +A +HV
Sbjct: 510 WFTI-----QMNKTDLPVSQPI-DTTALQGKSLLLVEANMQAASVIQ---QRLMLAGIHV 560
Query: 957 A-----------NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005
+ L C S P L ++L DV+ E
Sbjct: 561 TYRASMPDDIDHHDFALLC------LSPGEQPPLPVIL--NDVFKAE------------- 599
Query: 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKK 1065
+ K+ + + ++L G+ L KPL L ++ +
Sbjct: 600 --------QTADKVLVCLPTTELALSEKLTQTGVYACLGKPLAQRKLFEALCDNDDEPLS 651
Query: 1066 LQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPH 1125
+ P++ L+ ++ VDDN N ++ L + V G+ AV+
Sbjct: 652 ELEVSLLPTVVEKLQPLTVMAVDDNPANLKLISALLGERVETVITATGGKKAVE-YAKNK 710
Query: 1126 NFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTA 1184
FD FMD+QMPEMDG A +I + L H P++A+TA
Sbjct: 711 AFDLIFMDIQMPEMDGVTACQKIH---------------------DTALNHNTPVIAVTA 749
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ E+ + GMDDY++KP E+ L +A++
Sbjct: 750 HAMAGERERLINAGMDDYLTKPIEEHILQQILAKWI 785
>gi|300936299|ref|ZP_07151231.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 21-1]
gi|300458551|gb|EFK22044.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 21-1]
Length = 918
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 190/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
+L + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 KLTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|365538837|ref|ZP_09364012.1| signal transduction histidine kinase-like protein [Vibrio ordalii
ATCC 33509]
Length = 1273
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 196/612 (32%), Positives = 283/612 (46%), Gaps = 111/612 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ E K +AE A+ AKS FLA +SHEIRTPMN +LG+LQM ++T L + Q+DY ++
Sbjct: 527 ELAEAKEQAEYANRAKSDFLANMSHEIRTPMNAILGLLQMTLNTNLSSQQIDYLSKTQSA 586
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K L+ L+ND+LD +K+E+G+LE E F L D+L L SS +K IE+ V+
Sbjct: 587 AKSLLVLLNDILDFSKVEAGKLELEQYSFSLPDLLQETAVLLSSSLQEKDIEIIYDVAPD 646
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP ++IGD R RQI+ NL N+IKFT + G I +S+
Sbjct: 647 VPTILIGDSLRLRQILLNLASNAIKFT-NSGEIKISIE---------------------- 683
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
QH SD LL V DTG+G+ E +
Sbjct: 684 TQHISD---------------------------------NNCTLLFKVSDTGIGMTQEQK 710
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
IF F QA+SS SR YGGTG+GLSI + LV LM G+I S+ GS F+FT+T
Sbjct: 711 AIIFNGFSQAESSISRKYGGTGLGLSIVKRLVSLMQGDISVTSQLDKGSEFTFTITL--- 767
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+ P +++ GL+ LV++D + + LQ+L V A + A +
Sbjct: 768 ---NFSPVCNDIYSHLTQ--GLKILVVEDNETARLILQDILQKLGCQVFAAPNADEALAQ 822
Query: 967 LSDTCSTSVLPQLALV---LIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
L + + LA V L D D GL L +K Q E + +P + ++
Sbjct: 823 LHHLAQQNEVIDLAFVDWKLPDMD------GLALTRSIKNQ------ENLKKIPLVIMIT 870
Query: 1024 TSISET------DRDELKSDGIVTLLTKPLRLSVLIGCFQ-EDPESSKKLQQKRKKPSLG 1076
E D EL ++ +T L +I Q +D ++ + SL
Sbjct: 871 AFGLEILDKHLEDTHELLETVLIKPVTPELIKQTIINTRQSKDAVFAETFHRINSNDSLS 930
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
G IL+V+DN NR VA L++ GA + + G A+D L F MD+QM
Sbjct: 931 ----GISILLVEDNPTNRLVATELLRQCGATIIEAEDGFKALDIL-KNQQFSLVLMDIQM 985
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P MDG++ T +IR + +PILAMTA+ +
Sbjct: 986 PGMDGYETTRKIRQ--------------------EMKFHQLPILAMTANARPEDKATSLA 1025
Query: 1197 CGMDDYVSKPFE 1208
GM+ +++KPFE
Sbjct: 1026 AGMNGHIAKPFE 1037
>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1410
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 199/659 (30%), Positives = 303/659 (45%), Gaps = 119/659 (18%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
++ +++ A AA AKS+FLAT+SHEIRTPMN V+GM +L+DT L + Q DY +T +
Sbjct: 659 QDLAKVRDEALAATKAKSEFLATMSHEIRTPMNAVIGMTGLLLDTRLTSTQQDYVETIRS 718
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+SLIND+LD +KIESG+LE E PF L ++ L L ++KA K IELA +
Sbjct: 719 SSDALLSLINDILDFSKIESGKLELEQHPFDLRTCIEESLDLLATKAVSKNIELAYLIDP 778
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
P VIGD R RQI+ NL+ N++KFT + G + +S+
Sbjct: 779 ITPSKVIGDGARLRQILVNLLSNAVKFT-ETGEVVISLK--------------------- 816
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
+S P+V EN +T T Q R ++ V DTG+GIP
Sbjct: 817 -----------AVSLEPIVSEENLDEN-----STETTTQPNRYQIQFAVRDTGIGIPPAR 860
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI------GFVSEPGTGSTFSF 899
R+F F Q DSSTSR YGGTG+GL IS+ L E+MGG++ EP T F
Sbjct: 861 MNRLFKSFSQVDSSTSRQYGGTGLGLVISKRLAEMMGGQMWVESHKTIAGEPPTD--FIP 918
Query: 900 TVTFTEGERNSLDP--------KWQQYVPD-------------------------VSEFR 926
++T + G R LDP + ++P+ E
Sbjct: 919 SMTNSTGNRPLLDPVKIDQVSQTSKSFIPNKAVGSTFYFTIIVESCSHLKKEWGKTPELT 978
Query: 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDK 986
R L++D+ + +V Q M A + A + L + L++
Sbjct: 979 EKRLLIVDNNATNRQVLTLQTQAWGMLAKTAANGVEALNILRQG------EPFDMALLEM 1032
Query: 987 DVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKP 1046
+ D + GL L +++ L + +P + L + DR +L L KP
Sbjct: 1033 QMPDFD-GLSLAKEIRK------LSPYKRVPLVLLTSMGRQSIDRAQLYD--FSACLNKP 1083
Query: 1047 LRLSVLIGCFQ-----EDPE----SSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVA 1097
++ S L E E +++ + P L L + IL+ +D++VN++VA
Sbjct: 1084 IKQSQLYNVLMNILGGESLEVHLADKDRVKLTKDIPLLAKTLPLR-ILLAEDHLVNQKVA 1142
Query: 1098 EGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE 1157
L++ G G ++ L +D MD+QMPEMDG +A QI+ L + +
Sbjct: 1143 LQILQRMGYRADVAGNGLEVLEALR-RQTYDVILMDMQMPEMDGLEAARQIKKLYGDREQ 1201
Query: 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
++ I+A+TA+ +++ C+ GMDDY+SKP EQL + +
Sbjct: 1202 DMSERPR--------------IIAVTANAMESDRNDCIAAGMDDYISKPIRMEQLVSVL 1246
>gi|331648511|ref|ZP_08349599.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M605]
gi|386620350|ref|YP_006139930.1| BarA sensory histidine kinase [Escherichia coli NA114]
gi|387830630|ref|YP_003350567.1| two-component sensor kinase [Escherichia coli SE15]
gi|417663339|ref|ZP_12312919.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86]
gi|432398701|ref|ZP_19641479.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE25]
gi|432407829|ref|ZP_19650535.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE28]
gi|432423087|ref|ZP_19665629.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE178]
gi|432501226|ref|ZP_19742981.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE216]
gi|432559949|ref|ZP_19796616.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE49]
gi|432695553|ref|ZP_19930749.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE162]
gi|432707017|ref|ZP_19942097.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE6]
gi|432724221|ref|ZP_19959137.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE17]
gi|432728803|ref|ZP_19963679.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE18]
gi|432742493|ref|ZP_19977210.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE23]
gi|432920781|ref|ZP_20124370.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE173]
gi|432928465|ref|ZP_20129585.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE175]
gi|432982113|ref|ZP_20170886.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE211]
gi|432991852|ref|ZP_20180515.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE217]
gi|433097555|ref|ZP_20283736.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE139]
gi|433106999|ref|ZP_20292969.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE148]
gi|433111988|ref|ZP_20297847.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE150]
gi|281179787|dbj|BAI56117.1| two-component sensor kinase [Escherichia coli SE15]
gi|330908812|gb|EGH37326.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86]
gi|331042258|gb|EGI14400.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M605]
gi|333970851|gb|AEG37656.1| BarA sensory histidine kinase [Escherichia coli NA114]
gi|430914279|gb|ELC35382.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE25]
gi|430928760|gb|ELC49306.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE28]
gi|430943360|gb|ELC63478.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE178]
gi|431027611|gb|ELD40673.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE216]
gi|431090150|gb|ELD95923.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE49]
gi|431232982|gb|ELF28584.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE162]
gi|431256962|gb|ELF49896.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE6]
gi|431264475|gb|ELF56189.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE17]
gi|431272368|gb|ELF63475.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE18]
gi|431282726|gb|ELF73605.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE23]
gi|431440069|gb|ELH21399.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE173]
gi|431442452|gb|ELH23541.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE175]
gi|431490237|gb|ELH69854.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE211]
gi|431493994|gb|ELH73585.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE217]
gi|431614532|gb|ELI83685.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE139]
gi|431625912|gb|ELI94469.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE148]
gi|431627024|gb|ELI95436.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE150]
Length = 918
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 292/623 (46%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTE----FYHHKQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|357023991|ref|ZP_09086157.1| two-component sensor/response regulator hybrid [Mesorhizobium
amorphae CCNWGS0123]
gi|355544082|gb|EHH13192.1| two-component sensor/response regulator hybrid [Mesorhizobium
amorphae CCNWGS0123]
Length = 763
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 190/642 (29%), Positives = 296/642 (46%), Gaps = 117/642 (18%)
Query: 588 GHIFHAAINR-IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQM 646
G + H AI R I + ++ + RAE A AKS+FLATVSHEIRTPMNG++GM ++
Sbjct: 220 GAVSHRAIARDITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMGMAKL 279
Query: 647 LMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLS 706
L+DT+L Q Y S L++LI D+LD +KIE+GR +PE P L ++ DN++
Sbjct: 280 LVDTDLSPEQRTYVGAVSTSASALLALIEDLLDYSKIEAGRFDPEPQPTSLREIADNIIE 339
Query: 707 LFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766
L +++A K I L +V VP+++ DPGR RQ++ NL+GN+IKFT D G + VSV
Sbjct: 340 LMAARAFGKNIGLGCHVELDVPQMITADPGRVRQVLLNLIGNAIKFT-DTGGVLVSV--- 395
Query: 767 DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG 826
R++ + D++ V +T G D + +E F+
Sbjct: 396 --ARARTETTDRICF-----------TVTDTGPGLREEDMERIFEEFE------------ 430
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
Q+D +++R +GG G+GL+ISR L + MGG I
Sbjct: 431 ----------------------------QSDGTSTRVHGGAGLGLAISRRLAKAMGGSIS 462
Query: 887 FVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH 946
S G GS F F + T P+ +Q + G RA+++ +I A+
Sbjct: 463 VSSRLGEGSEFVFELPATAATEP---PQNRQSI-----LAGRRAVIVSKNAIEADAIART 514
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
++ AV +A ++ A + + C ++L+D + + + +LK+ R+
Sbjct: 515 IRAHGGAVDLATTLAQATPFAAG-CD--------VLLVDAAMENSD-----GRLLKRLRQ 560
Query: 1007 KGGLEISRNLPKIFLLATSISETDR---DELKSDGIVTLLTKPLRLSVLIGCF--QEDPE 1061
G + T I+ TDR E +++G T L +P+R L+ P
Sbjct: 561 NGFADCE--------AITLIAPTDRGMLGEFRANGYATFLARPVRGETLLRVLLTSHAPV 612
Query: 1062 SSKKLQQKRKKPSL----GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
+ K P + G G +L+ +DN +N +A L K G V V G+AA
Sbjct: 613 LPQPKSDKHGAPPVRAGAGRREHGLSVLIAEDNDINAMLARATLLKAGHRVKVVGNGKAA 672
Query: 1118 VDKLTPP---HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL 1174
V+ +T H FD MDL MP MDG A IR E E+ +
Sbjct: 673 VEAITDAGLKHRFDVVLMDLHMPVMDGLDAIAAIRRHEEEM-----------------AV 715
Query: 1175 WHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
VPI+ ++AD + + + G +V+KP + + L AV
Sbjct: 716 PPVPIMVLSADSQEKTRHAVLAHGASGFVTKPLDPDALVHAV 757
>gi|427715757|ref|YP_007063751.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
gi|427348193|gb|AFY30917.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
Length = 1536
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 197/637 (30%), Positives = 300/637 (47%), Gaps = 106/637 (16%)
Query: 594 AINRIAQVENDYHEMMELKAR-AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
A +++ + E + +E+ R AE+A +KS FLA +SHEIRTPMN VLGM ++++T L
Sbjct: 863 AQSQLLEAETRQRQELEVARRQAESASQSKSAFLANMSHEIRTPMNAVLGMTGLMLETPL 922
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
+ Q D+ +T SG L++LIN++LD +K+E+G + E + F L ++ VL L + +A
Sbjct: 923 NREQQDFMETIRISGDALLTLINEILDLSKLEAGEMALETLNFDLSTCVEEVLELLAPQA 982
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+ K +ELA + VP + GD R RQI+ NL+GN+IKFT G + V + +
Sbjct: 983 HSKELELAALIYPHVPTHLQGDASRLRQILMNLIGNAIKFT-SVGEVVVRAEVRSQTSTT 1041
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
V + F + D
Sbjct: 1042 VTIH------------------------FAITD--------------------------- 1050
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
TG+GI E Q ++FTPF Q D+ST+R YGGTG+GL+I + LV LMGGEIG S+ G
Sbjct: 1051 ----TGLGITPEDQHQLFTPFTQVDASTTRKYGGTGLGLAICKQLVTLMGGEIGVESQLG 1106
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM 952
GS F F V FT+ L P + D + R LV+DD + ++ + R M
Sbjct: 1107 EGSKFWFDVPFTK----QLQPI--SSIHDRIQLTNRRLLVVDDNATNRKIIYHQATRWGM 1160
Query: 953 AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLE 1011
V A S A S + + + LV D+ EI G+ L +KQ
Sbjct: 1161 QVDKAESAATALSAIYAAYEQKQIYDVILV----DMQMPEIDGMKLGEQIKQDAAIA--- 1213
Query: 1012 ISRNLPKIFLLATSISETDRDELK---SDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQ 1068
N+P I L +T+ RDE++ + G L KP++ S L+ S ++L
Sbjct: 1214 ---NIPLIMLTSTN----QRDEIQRALNIGFAAYLVKPVKPSRLLDTIMTILGSQRELTA 1266
Query: 1069 KRKK---------PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD 1119
+ P+ + +IL+ +DN+VN++VA L++ G GR +
Sbjct: 1267 GEVRVENPETVGSPTPDAIAPKIRILLAEDNLVNQKVALKQLERLGYSADVAGNGREVL- 1325
Query: 1120 KLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPI 1179
+L +D MD QMP +DG + T +I AS +
Sbjct: 1326 QLLEKIPYDLILMDCQMPVLDGLETTKEIHRWSESC---FASRRRPV------------V 1370
Query: 1180 LAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
+AMTA+ ++ + C+ GMDDY+SKP E+L TA+
Sbjct: 1371 IAMTANAMKEDRQMCIDAGMDDYLSKPVIKEKLATAL 1407
>gi|417086226|ref|ZP_11953462.1| hybrid sensory histidine kinase BarA [Escherichia coli cloneA_i1]
gi|355350751|gb|EHF99947.1| hybrid sensory histidine kinase BarA [Escherichia coli cloneA_i1]
Length = 918
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 292/623 (46%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|83643847|ref|YP_432282.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
gi|83631890|gb|ABC27857.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
Length = 830
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 183/633 (28%), Positives = 294/633 (46%), Gaps = 104/633 (16%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
R A++ +++E K AE+A+ AKS FLAT+SHEIRTPMNG+LGML++L ++L A Q
Sbjct: 162 RTAELAETNRKLLEAKEAAESANEAKSLFLATMSHEIRTPMNGILGMLELLSHSQLSAEQ 221
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
T +S L++++ND+LD +KIE+GR+E E + + ++++ V ++ AN++
Sbjct: 222 TKMISTVRDSAFSLLNILNDILDFSKIEAGRMELENITLSVEEIIEGVAETVAASANKRN 281
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
+ L YV +P+ ++GD R RQI+ NL N+ KFT + V L D+
Sbjct: 282 LHLHCYVDPDIPDALVGDEVRLRQILFNLCSNATKFTDTANGLQGCVTLRADL------- 334
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
H + ++Y+ + ++V+D
Sbjct: 335 -----------LHSAGQLYS---------------------------------IRISVKD 350
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
G+G+ ++F+PF Q +SST+R YGGTG+GLSI + L E+MGG I SEPG G+
Sbjct: 351 NGIGMDQVTLDKLFSPFTQGESSTTRRYGGTGLGLSICKRLTEIMGGAIEVASEPGQGTE 410
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVI-DDKSIRAEVTRYHLQRLEMAVH 955
F +T ++P G+ LV+ D+ R V Y L + AV
Sbjct: 411 FRLNLTLAAAPGAQVEPP--------PTLNGIETLVVLSDELTRTTVCNY-LLKFGAAVQ 461
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKD--------VWDKEIGLVLHYMLKQQRRK 1007
++ A +LS P + L ++D + + G + +++ RR
Sbjct: 462 TCQDIKEASMHLSKALQLDRTPPVLLTYAEQDSDLSPLLKLRGQPWGQDVRFIILTPRRY 521
Query: 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQ 1067
L + K+++ ++D ++ R S + FQ DP+ +
Sbjct: 522 RSLNPPPDSVKVYVYPLC---------RNDLVMAAAAAAGRCSPPVRHFQ-DPDKIPRFD 571
Query: 1068 QKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
+P L + ILV +DN+ N+ V LK+ G V+ G A+ +
Sbjct: 572 VP-NRPGLQPV----SILVAEDNLTNQEVIRLQLKRLGLDCIIVENGCQAL-AVWQQRQV 625
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D D MPEMDGFQ T IR E GL PI+A+TA+ +
Sbjct: 626 DLVLTDCHMPEMDGFQLTSAIREKE------------------GAGL-RTPIIAITANAL 666
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ E+C+ GMDDY+SKP E +LY +A++
Sbjct: 667 RGEAERCLHAGMDDYLSKPVEIRKLYETLAKWL 699
>gi|427738829|ref|YP_007058373.1| signal transduction histidine kinase [Rivularia sp. PCC 7116]
gi|427373870|gb|AFY57826.1| signal transduction histidine kinase [Rivularia sp. PCC 7116]
Length = 1288
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 198/628 (31%), Positives = 301/628 (47%), Gaps = 117/628 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
++ + K AE A+ AKS+FLA +SHEIRTPMN V+GM +L+D +L QLD+ +T +S
Sbjct: 617 QLEQAKQGAETANRAKSEFLAMMSHEIRTPMNAVIGMSGLLLDMDLTPRQLDFVETIRSS 676
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G L+++IND+LD +KIESGRL+ E +PF+L + ++ L L +S+A K + LA + +
Sbjct: 677 GDALLTIINDILDFSKIESGRLDLEKLPFNLRNCIEESLDLLTSQAADKNLNLAYMIDSQ 736
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
P ++IGD R RQII NL+ N++KFTQ G + VSV + S++ D
Sbjct: 737 TPTLIIGDVTRVRQIIVNLLSNAVKFTQ-AGEVCVSVS-GRQLSSELSTNDY-------- 786
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+IK V+ DTG+GIP E
Sbjct: 787 ----------------------------------------QIKFSVS--DTGIGIPQEKI 804
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV---TF 903
R+F PF Q D+S +R YGGTG+GL+IS+ L E+M G + S G GSTF FT+ +
Sbjct: 805 QRLFKPFSQVDASMTRQYGGTGLGLAISKRLSEIMDGTMWVESTVGVGSTFHFTIAAQSV 864
Query: 904 TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
++LD P +S G R LV+D + + +++ + V A++ A
Sbjct: 865 ASAGISNLD----NIQPHLS---GKRLLVVDSNATNRNILTLQMEKWGIVVFAASTTSEA 917
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
++ + +ID + GL L + G+ LP I +L+
Sbjct: 918 LELVNSR------KDFDMAIIDMQTPQVD-GLNLAAEIH------GVPGCEQLP-IVMLS 963
Query: 1024 TSISETDRDELKSDGIVTLLTKPLRLS--------VLIGCFQEDPESSKKLQQKRKKPSL 1075
+ T + + V LL KP++ S +L G + S+ K+ + L
Sbjct: 964 SVDRVTQQQLVAKSKFVALLNKPIKQSQLYDTCVRILCGKQISNLSSTSKVDDMQLSEQL 1023
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
+IL+V+D +N++VA L+K G G A+ L +D FMD+Q
Sbjct: 1024 PL-----RILLVEDMPLNQKVALHMLQKLGYSADVAANGLEALTSLR-RQEYDIVFMDVQ 1077
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP----ILAMTADVIQASN 1191
MPEMDG QAT R + E W P I+AMTA+ +Q
Sbjct: 1078 MPEMDGLQAT---RCICKE--------------------WSPPLRPWIIAMTANAMQGDR 1114
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+C+ GM+DY+SKP + L A+ +
Sbjct: 1115 EECLNAGMNDYLSKPVRIDALVQALHNY 1142
>gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B]
gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B]
Length = 1947
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 191/630 (30%), Positives = 298/630 (47%), Gaps = 101/630 (16%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ V +D E+ A+ A+ AKS FLA +SHEIRTPMN ++GM + + T+L + Q
Sbjct: 1194 VGSVLSDVTELNHAMEIADDANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTDLTSKQR 1253
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
+Y + H S + L+ +IND+LD +KIE+G+L+ E V F L DV+DN++SL KA G+
Sbjct: 1254 NYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEAVDFRLDDVMDNLVSLVGLKAEDHGL 1313
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + V +P T L+G+ ++ +Q + ++L +
Sbjct: 1314 ELLLDVPPDLP--------------TALIGDPLRLSQ------ILINLGN---------- 1343
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
N+V+ D E +++ +V D+
Sbjct: 1344 -------NAVKFTEDGEVVVAV-------------------RVEEESNAEVRMHFSVRDS 1377
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+G+ E Q R+F F QADSST+R YGGTG+GL+IS+ LV +M GEI SEPG GS F
Sbjct: 1378 GIGMNKEQQSRLFQSFSQADSSTTRKYGGTGLGLAISKQLVAMMDGEIWVESEPGVGSDF 1437
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
FT F + + +P PD + L LV+DD E+ L+ L + A
Sbjct: 1438 QFTACFEKQQGEIPEPT---VAPD--DLGPLPILVVDDNQSAREILAAILESLGFQIKTA 1492
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGL--VLHYMLKQQRRKGGLEISRN 1015
+ + A + + LV++D W + GL V L Q+ +N
Sbjct: 1493 SGGRQAVEMIK---AADADEPFKLVMLD---W-RMPGLDGVQTGQLIQED-----TTLKN 1540
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLI-----GCFQEDPESSKKLQQKR 1070
PKI ++ E ++ I LTKP S L+ +E E+ + +K+
Sbjct: 1541 QPKIIMITAFGREEMQEGAGGLAISGFLTKPATASSLLDEIMRAMGREVAENPRGGDRKQ 1600
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
L+G Q+L+V+DN +N+ +A L HG V + G+ A+D L H FD
Sbjct: 1601 AVKEFAAELRGAQVLLVEDNEINQELAVEILTTHGMTVQVANNGQEALD-LIAAHQFDGV 1659
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD QMP MDG++AT RH+ N N +P+LAMTA+ +
Sbjct: 1660 LMDCQMPVMDGYEAT---RHIRN-----------------NPATKDLPVLAMTANAMVGD 1699
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E+ ++ GM+D+++KP L+ +A++
Sbjct: 1700 KEKVIEAGMNDHIAKPINLADLFKTMAKWI 1729
>gi|309791477|ref|ZP_07685981.1| PAS fold family protein [Oscillochloris trichoides DG-6]
gi|308226474|gb|EFO80198.1| PAS fold family protein [Oscillochloris trichoides DG6]
Length = 1306
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 194/607 (31%), Positives = 284/607 (46%), Gaps = 108/607 (17%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS FLAT+SHEIRTPMN V+GM +L+DT L+A Q D+ +T NSG L+++IND+LD
Sbjct: 659 AKSDFLATMSHEIRTPMNAVIGMTGLLLDTPLNAEQRDFVETIRNSGDALLTIINDILDF 718
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIESG+ E E PF L D L+ L L S++A +K I+LA ++ VP+ + GD R RQ
Sbjct: 719 SKIESGKFELEQQPFDLRDCLEAALDLVSARAAEKQIDLAYMIARNVPQAIEGDVTRVRQ 778
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
I+ NL+ N++KFT G + V + ++D++ E + V +T G
Sbjct: 779 ILVNLLANAVKFTP-AGEVVVMIE-------GRRIRDQLFEVHI--------AVRDTGIG 822
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
P DR R+F F Q D+ST
Sbjct: 823 IP-ADRLN---------------------------------------RLFKAFSQVDAST 842
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
+R YGGTG+GL+IS+ L LMGG + S G GSTF FT+ E P+
Sbjct: 843 TRQYGGTGLGLAISQRLCALMGGRMWVESTVGVGSTFHFTIIAPAAE----SPQRHDQRG 898
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLA 980
V E G LV+DD + + M VHV S +L + L
Sbjct: 899 VVPELTGKHLLVVDDNETNRRILTNQAESWGMRVHVFASGPEVLDWLHTQDDPVDIAILD 958
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV 1040
+ + D ++ V+H + ++P + L TS+ D L V
Sbjct: 959 MQMPGMD--GSQLAEVIHTT----------PATADIPLVLL--TSLGRRVED-LVQGNFV 1003
Query: 1041 TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK---------QILVVDDNM 1091
T LTKP++ + L + Q+ ++PSL + +IL+ +DN+
Sbjct: 1004 TSLTKPIKAAQLYQTLL----AILGKQEGERQPSLPLVTAYDTTMAERLPLRILLAEDNV 1059
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
VN++VA L K G G +D L +D MD+QMPE+DG +A+ +IR
Sbjct: 1060 VNQKVATKTLAKLGYRADVAANGLEVLDALA-RQRYDVVLMDVQMPELDGLEASRRIR-- 1116
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
NEI + I+AMTA+ +Q+ + C+ GMDDY+SKP E+
Sbjct: 1117 -NEI----------------ATVRQPRIIAMTANAMQSDRDLCIAAGMDDYISKPVRIEE 1159
Query: 1212 LYTAVAR 1218
L A++R
Sbjct: 1160 LVAALSR 1166
>gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
266]
gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
266]
Length = 1398
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 198/643 (30%), Positives = 302/643 (46%), Gaps = 130/643 (20%)
Query: 606 HEMMELKAR--AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTA 663
HE + AR AE+A+ AKS+FLA +SHEIRTPMNGV+GM +L+DT+L Q D+A
Sbjct: 850 HETALVDARYAAESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDTDLSDEQRDFADML 909
Query: 664 HNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYV 723
SG+ L+++IND+LD +KIE+G+LE E + F L +L++ ++ KA +K +E V
Sbjct: 910 LASGESLLTVINDILDFSKIEAGKLELEHIVFDLRKLLESFGAVMGLKAVEKNLEFNCVV 969
Query: 724 SDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKS 783
S VP + F D G I
Sbjct: 970 SPEVP---------------------VFFKGDPGRI------------------------ 984
Query: 784 LNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTM-------EQLGRIKLLVTVED 836
++ N L+G + K N N E G L +V+D
Sbjct: 985 --------RQILNNLAGNAI----------KFTQNGNVTVAVSMQSENNGDAVLRFSVKD 1026
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+GIP R+F F Q D+ST+R YGGTG+GL+ISR LVELMGG+IG +S G GS
Sbjct: 1027 TGIGIPEAKLDRLFKSFTQVDASTTRKYGGTGLGLAISRQLVELMGGKIGVISHEGNGSE 1086
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDV-----SEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
F FT+ K Q + + S F G+RALV+DD + ++ + L L+
Sbjct: 1087 FWFTIFL----------KKQPFYSTIETQPTSAFAGIRALVVDDNAANRKMLKALLSSLD 1136
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
+ V A+ A L + AL +ID + D + G +L +K+
Sbjct: 1137 IRVTEASGGDAALGELRSAFKSG--DPFALAIIDMQMPDMD-GFMLGQTIKEDL------ 1187
Query: 1012 ISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE------------D 1059
+ RN ++FL++ + R+E G L+KP+ L+ + +
Sbjct: 1188 LLRN-TELFLMSPVGTLNQREEYHRAGFSANLSKPVGQLELVAAINKVVFNHDNQSGSRN 1246
Query: 1060 PESSKKLQQKRKKP--SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
P S + ++ + P +G L+ +IL+ +D+ VN+ V G L K G V V G+
Sbjct: 1247 PSISYPVTEEGEPPMVPVGK-LEHYRILLAEDSRVNQMVVIGVLTKFGYGVDVVSNGQEC 1305
Query: 1118 VDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177
VD L +D MD+QMP MDG AT IR +++ + ++
Sbjct: 1306 VDVLQ-KRTYDLVLMDVQMPVMDGLNATGIIRDPASKVLDH-----------------NI 1347
Query: 1178 PILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
P++A+TA +Q E C+ GM+DY+SKP + L ++++
Sbjct: 1348 PVIALTAHAMQGDRESCLYAGMNDYISKPIDASVLTETISKWL 1390
>gi|119509388|ref|ZP_01628537.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
gi|119466002|gb|EAW46890.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
Length = 1508
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 199/615 (32%), Positives = 295/615 (47%), Gaps = 112/615 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
+ AE A AKS FLA +SHEIRTPMN VLGM +L++T L+ Q D+A+T SG L+
Sbjct: 874 RQEAELASQAKSAFLANMSHEIRTPMNAVLGMTGLLLETNLNREQRDFAETIRISGDALL 933
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
LIN++LD +K+E+G + E + F L ++ VL L + +A+++ +E+A + VP +
Sbjct: 934 CLINEILDLSKLEAGEMFLETLDFDLSTCVEEVLELLAPQAHKQELEIAGLIHRNVPVHL 993
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
GD R RQI+ NLVGN+IKFT G I V L
Sbjct: 994 QGDASRLRQILMNLVGNAIKFT-STGEIVVRAEL-------------------------- 1026
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
LS P NT T+ +V DTG+GI E Q ++F
Sbjct: 1027 ------LSQTP---------------NTVTIH--------FSVTDTGIGISSEDQNKLFQ 1057
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
PF Q D+S +R YGGTG+GL+IS+ LV LMGG IG S+ G GS F F +TFT+ L
Sbjct: 1058 PFTQVDASITRKYGGTGLGLAISQQLVSLMGGTIGVNSQLGKGSQFWFKLTFTQ----QL 1113
Query: 912 DPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
P V + E L R LV+DD + ++ + M V A S A + L
Sbjct: 1114 QP-----VHSIQESVILTHRRLLVVDDNATNRKIIYHQATHWGMQVDEAASAVQALNTLQ 1168
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE 1028
T + LAL+ + D GL L +K + ++P I L +T+ E
Sbjct: 1169 TAAETGMRYDLALIDMQMPQVD---GLTLGTQIKAN------PLIADIPLIMLTSTNQRE 1219
Query: 1029 TDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK-- 1082
+ L + G V+ L KP++ L ++ + P S + +KP++ K
Sbjct: 1220 EVQKAL-NIGFVSYLVKPVKASRLLDTIVNILESRPNSPEI-----QKPTINKTTLTKSQ 1273
Query: 1083 -QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+IL+ +DN+VN++VA L+ G G+ + +L +D MD QMP +DG
Sbjct: 1274 LKILIAEDNLVNQKVALKQLQNLGYEADVAANGQEVL-QLLDRIPYDLILMDCQMPVLDG 1332
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ T +IR I+ Q ++AMTA+ ++ + C+ GM+D
Sbjct: 1333 LETTREIRR---RIHRQPV------------------VIAMTANAMKEDQQICLDAGMND 1371
Query: 1202 YVSKPFEDEQLYTAV 1216
Y+SKP E+L A+
Sbjct: 1372 YLSKPVNKEKLARAI 1386
>gi|427405021|ref|ZP_18895477.1| hypothetical protein HMPREF9710_05073 [Massilia timonae CCUG 45783]
gi|425716620|gb|EKU79591.1| hypothetical protein HMPREF9710_05073 [Massilia timonae CCUG 45783]
Length = 957
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 186/618 (30%), Positives = 285/618 (46%), Gaps = 112/618 (18%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS FLAT+SHEIRTPMNGVLGM +ML+ TEL AQ Y Q SG+ L+ +IND+LD
Sbjct: 278 AKSGFLATMSHEIRTPMNGVLGMTEMLLATELTEAQRSYTQLVKRSGEHLLVIINDILDF 337
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIE+G+L E++ F+L D+LD++ ++++ +A KG+ +++ +P + GDP R RQ
Sbjct: 338 SKIEAGKLTIEYINFNLWDLLDDIHNVYTPQAAAKGLGCDFDIANDIPVAICGDPNRLRQ 397
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
I+ NL+GN+IKFT + G I V +A + +V ++ +V + + + +++N
Sbjct: 398 IMANLIGNAIKFTTE-GRIMARVRVAGEDAQRVALRFEVHDTGIGISREARARIFNA--- 453
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
F D++ T
Sbjct: 454 ------------FSQADDSTT--------------------------------------- 462
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
R YGGTG+GL+IS+ LVELM G IG + P GS F FT+ F + + P +Q+
Sbjct: 463 -RKYGGTGLGLAISKQLVELMKGTIGVENAPRQGSIFWFTLGFDKRRVDPDAPGHRQHTL 521
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHL-QRLEMAVHVANSMQLACSYLSDTCSTSVLPQL 979
D LR LV+D++ E +R L Q+LE + A + S + +
Sbjct: 522 D-----SLRVLVVDEQ----EASRNELVQQLEAWRATCEGVGSAAAAFEHLVSAARAGR- 571
Query: 980 ALVLIDKDVWDKEI----GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELK 1035
D V D E+ GL L ++ + ++R+ I LL+ D + +
Sbjct: 572 ---PYDAAVLDMELTQTSGLALAASVRAE------PVARS-THIVLLSPEKLAADPVQRR 621
Query: 1036 SDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK--------------PSLGHLLKG 1081
G+ L KP R + L C +
Sbjct: 622 EAGVAYQLVKPARAADLYACLTARAARLHHPAAAAAAAAAAPFDAPRPAPMARAQPARRA 681
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+++L+ +DN VN VA L+ G C G+ A+ + +DA MD QMP MDG
Sbjct: 682 RRVLLAEDNPVNVEVARAMLESLGLETHCATNGQEALHAVHEG-GWDAVLMDCQMPVMDG 740
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
F AT +IR E E+ +P++A+TA+ +Q E C+ GMDD
Sbjct: 741 FAATGEIRRHEREMGRA----------------RTLPVIAITANALQGDREACLAAGMDD 784
Query: 1202 YVSKPFEDEQLYTAVARF 1219
Y+SKPF +QL + R+
Sbjct: 785 YLSKPFTQQQLAAVIGRW 802
>gi|388569253|ref|ZP_10155656.1| multi-sensor hybrid histidine kinase [Hydrogenophaga sp. PBC]
gi|388263494|gb|EIK89081.1| multi-sensor hybrid histidine kinase [Hydrogenophaga sp. PBC]
Length = 2097
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 188/619 (30%), Positives = 283/619 (45%), Gaps = 107/619 (17%)
Query: 604 DYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTA 663
D +++ AEAA AK +FLA +SHEIRTP++ V+G+ +L DT L Q +
Sbjct: 1346 DITDLVHATEAAEAASRAKGEFLANMSHEIRTPLHAVIGLSHLLGDTPLTVRQQQLLSKS 1405
Query: 664 HNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYV 723
+ + L+ ++NDVLD AKIE+G E PF +L + ++F +A K + L++
Sbjct: 1406 QMASQSLLGIVNDVLDLAKIEAGAFTLEDAPFEPAVLLAELDAVFRQQAEAKRLALSVRA 1465
Query: 724 SDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKS 783
+ +P V GD R RQ+ TNL+GN++KFT R +VDV +L +
Sbjct: 1466 APELPRQVRGDALRLRQVFTNLLGNALKFT---------------ARGEVDVSLGLLSRE 1510
Query: 784 LNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPL 843
++V+ + + V D+G GI
Sbjct: 1511 GDTVRLRGE-----------------------------------------VRDSGEGIAP 1529
Query: 844 EAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903
E Q R+F PF QAD+STSR +GGTG+GLSI R LVE+MGG IG S PG GS F F V
Sbjct: 1530 EVQARLFMPFSQADASTSRRHGGTGLGLSIVRHLVEMMGGRIGVDSAPGEGSLFWFEVNL 1589
Query: 904 TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
E P + L LVIDD S + + S +
Sbjct: 1590 REAAAAE---------PLTAPSGALEVLVIDDVSAERQALVDMARAFGWRTEACESGEAM 1640
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
+++ + P +L+D W L + R G L +P +++
Sbjct: 1641 LNWIDQRLAAGQ-PLPDAMLVD---WQLPGMNGLQSLAALADRHGLL----RMPAALMVS 1692
Query: 1024 TS----ISETDRDELKSDGIVTLLTKPLRLSVLI-----GCFQEDPESSKKLQ-QKRKKP 1073
S ++ D L D +LTKP+ SVL G S + L Q++ P
Sbjct: 1693 ASDRERVAREDHLRLADD----ILTKPVNASVLFNAVNQGVVARHGHSRRVLDAQRQTAP 1748
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
+ L G ++LVVDD+ +N+ +A+ L++ GA V GR A+ L +FD MD
Sbjct: 1749 ASARRLAGTRVLVVDDSDINQEIAQHMLQREGAHVFLASNGREALALLRDGPHFDVVLMD 1808
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMPEMDG QAT ++R +N L H+P++A+TA + +
Sbjct: 1809 VQMPEMDGLQATRELRADDN--------------------LCHLPVVALTAGALAEERRR 1848
Query: 1194 CMKCGMDDYVSKPFEDEQL 1212
+ GMD +++KP + +QL
Sbjct: 1849 ALDAGMDHFLTKPIDPDQL 1867
>gi|300856171|ref|YP_003781155.1| sensor histidine kinase/response regulator hybrid [Clostridium
ljungdahlii DSM 13528]
gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium ljungdahlii DSM 13528]
Length = 949
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 192/625 (30%), Positives = 305/625 (48%), Gaps = 115/625 (18%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ + K +AEAA++AKSQFLA +SHEIRTPMNG+ G L +L T L Q D+ + A +
Sbjct: 311 RELYKAKEQAEAANIAKSQFLANMSHEIRTPMNGIFGFLDLLQSTNLSLEQKDFIREAKS 370
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
+ K L+ +IND+LD +KIE+ +L E + F+L + +++ +SL KA +KG+EL +S+
Sbjct: 371 ASKVLLYIINDILDFSKIEAKKLTMEKIRFNLRNTIEDAVSLLVPKAVEKGLELYTMISE 430
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH-LADDVRSKV---DVKDKVLE 781
VPE V+GDP R RQI+ NL+ N++KFT +KG I V+V L ++ + V +VKD
Sbjct: 431 GVPEEVVGDPSRLRQILNNLISNAVKFT-NKGEISVTVDCLKEENETAVLNFEVKD---- 485
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
+ + D + N F D T+T + G
Sbjct: 486 ---TGIGIRKDHIDNIFKSFSQAD-------------TSTTRKYG--------------- 514
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
GTG+GL+IS LV++MGGEI S G GS F F V
Sbjct: 515 ------------------------GTGLGLAISSELVKMMGGEIHVESIFGKGSIFKFDV 550
Query: 902 TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ 961
+R S Q++ + G+ L+++D ++ +LQ + V A +
Sbjct: 551 RLKIVKRAS----GQKFA--FEKLDGMNILIVNDDVNNRKIINSYLQETGLKVSEAENGS 604
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFL 1021
A + + ST ++ + ++D + D G L LK + ++N+ K+ L
Sbjct: 605 SAITTILSNASTK--NKINIAIMDYQMNDMS-GYELANTLKT------IPFAKNI-KLIL 654
Query: 1022 LATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF-------QEDPESSKKLQQKRKKPS 1074
L + + + + +K G + L+KP+R L+ C +E+ E + + + K
Sbjct: 655 LTSITQKGNAETVKEYGFSSYLSKPVRRDDLLACIAMVLGLKKENGEGHQVITKHIVKEV 714
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTC---VDCGRAAVDKLTPPHNFDACF 1131
L +IL+V+DN +NR++ LK H +TC VD A K ++D F
Sbjct: 715 KNAL--EPRILLVEDNKMNRKIVITMLKSHD--MTCDVAVDGSEAL--KAVLQKDYDVVF 768
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD QMP MDG++ T +IR LE + H I+AMTA+ + +
Sbjct: 769 MDCQMPVMDGYECTSKIRMLEGDKK-------------------HTTIIAMTANAMDGDS 809
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAV 1216
E+C+K GMDDY+SKP +++ +
Sbjct: 810 EKCIKTGMDDYISKPINFNKMFKMI 834
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL----TPPHNFDACFMDL 1134
L G IL+V+D++ NR++ L++ G V+ + G +A+ + + + + MD
Sbjct: 568 LDGMNILIVNDDVNNRKIINSYLQETGLKVSEAENGSSAITTILSNASTKNKINIAIMDY 627
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QM +M G++ ++ + N + ++ +T+ + + E
Sbjct: 628 QMNDMSGYELANTLKTIPFAKN--------------------IKLILLTSITQKGNAETV 667
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVA 1217
+ G Y+SKP + L +A
Sbjct: 668 KEYGFSSYLSKPVRRDDLLACIA 690
>gi|407925140|gb|EKG18159.1| hypothetical protein MPH_04548 [Macrophomina phaseolina MS6]
Length = 1319
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 192/606 (31%), Positives = 289/606 (47%), Gaps = 105/606 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A+ KS+FLA +SHEIRTPMNG++GM Q+ +DT+L +Q + HN L+++I
Sbjct: 727 AELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHSQREMLTIVHNLAGQLLTII 786
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
+D+LD +KIE+ R+ E +PF L + N L SS+AN++ + LA V VP+ VIGD
Sbjct: 787 DDILDISKIEANRMVMEEIPFSLRGTIFNALKSLSSRANERRLNLAYQVDSSVPDYVIGD 846
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQII NLVGN+IKFT+ G + V++ +A + K D
Sbjct: 847 SFRLRQIILNLVGNAIKFTE-HGEVKVAISMAPQIDCKPD-------------------- 885
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
+ F V D TG+GI + IF F
Sbjct: 886 -QYIFKFAVSD-------------------------------TGIGIHGDKLNLIFDTFQ 913
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD ST+R +GGTG+GLSIS+ LV LMGG++ SE G GSTF FT G +P
Sbjct: 914 QADGSTTRKFGGTGLGLSISKRLVTLMGGKMWVESEFGCGSTFYFTCKVRLG-----NPD 968
Query: 915 WQQYVPDVSEFRGLRALVIDD-KSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
P +S + L ID K+ E HL+ L++ HV ++ +
Sbjct: 969 ISAIQPQLSPYSKHTVLFIDQGKTGYGEEIVNHLKALDLRPHVIHT--------DENTPL 1020
Query: 974 SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
S +P D + D + R+ G E + +P + ++ ++ + +
Sbjct: 1021 SEIPSPGKHAYDCVIVDCNL---------TARKLRGEERFKYIP-LVMVTPRVAISLKSA 1070
Query: 1034 LKSDGIVTLLTKPLRLSVLIGCFQEDPESSK-KLQQKRKKPSLGHLLKGKQILVVDDNMV 1092
L+ DGI + +T P C D ++ R P + + K IL+ +DN V
Sbjct: 1071 LE-DGISSFITTP--------CLPIDLGNALIPALDGRAAPLISNQSKSFNILLAEDNAV 1121
Query: 1093 NRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLE 1152
N+R+A L+K+ VT + G A +++ +D MD+QMP M GF+AT +IR E
Sbjct: 1122 NQRLAVKILQKYHHNVTVANNGLEAFEQIKKT-KYDVVLMDVQMPVMGGFEATAKIREYE 1180
Query: 1153 NEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
E + + P++A+TA + E+C++ MDDY+SKP + QL
Sbjct: 1181 REHH-----------------ITPTPVIALTAHAMVGDREKCLQAQMDDYLSKPLKQNQL 1223
Query: 1213 YTAVAR 1218
+ R
Sbjct: 1224 IQTILR 1229
>gi|260779461|ref|ZP_05888351.1| sensory box histidine kinase/response regulator [Vibrio
coralliilyticus ATCC BAA-450]
gi|260604270|gb|EEX30574.1| sensory box histidine kinase/response regulator [Vibrio
coralliilyticus ATCC BAA-450]
Length = 1205
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 207/694 (29%), Positives = 334/694 (48%), Gaps = 134/694 (19%)
Query: 550 FGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLV--GHIFHAAINRIAQVENDYHE 607
F P + +++ + AI I VV + LL + HAA+ R A +
Sbjct: 413 FIQPVYQEQLNTVENSGAIASYLAIGGGIFVVTLLLLGLLANKSHAALERFA------DK 466
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
+ + A+AA+ AKS FLA +SHEIRTPMN ++GM + + T+L AQ +Y Q S
Sbjct: 467 LALARDDADAANKAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLSKAQRNYIQKVKLSA 526
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
L+ LIND+LD +KIE+G+L+ E V FHL +VLDN+ +L +A+++G+EL I++ V
Sbjct: 527 DSLLGLINDILDFSKIEAGKLDIENVDFHLENVLDNISNLVGLRASERGLELLIHIDRDV 586
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P ++GDP R QI+ NL N++KFT+ +G I VS+ L + + +K V + +
Sbjct: 587 PTALVGDPLRLGQILINLANNAVKFTE-QGEIKVSIALEKKDGNDITLKFSVTDSGIGMT 645
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
+ +K++N F D++ T
Sbjct: 646 PEQCNKLFN---------------KFTQADSSTT-------------------------- 664
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R YGGTG+GL+IS+ L +LMGG+IG SE G GSTFSFTV G
Sbjct: 665 --------------RKYGGTGLGLAISKELCQLMGGDIGVTSEQGKGSTFSFTVQL--GV 708
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
++L + Q VP E L+ LV+DD + + L+ L+
Sbjct: 709 SHAL-KQEQLLVP--KELGQLKILVVDDNASARLIVEDILESLQFET------------T 753
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS---------RNLPK 1018
S T S L +L + +K +D LV+ Q K G++++ R PK
Sbjct: 754 SVTNVDSALDELEEAITNKQPYD----LVISDW--QMPVKDGIDLAEIMWDRLAEREQPK 807
Query: 1019 IFLLATSISETDRDELKSDGIV-------TLLTKPLRLSVLIGCF-----QEDPESSKKL 1066
+ +L + R+EL +D + ++L KP+ S L E S+
Sbjct: 808 LLML----TAYGREEL-TDAFINRQLTPPSILDKPVTSSHLFDAIVTLYGVEGSRVSRSD 862
Query: 1067 QQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN 1126
+++ + + L G Q+L+V+DN +N+ +A L+ VT + G+ A+D L H+
Sbjct: 863 VEEQTQLANAQQLAGAQLLLVEDNEINQELATELLEGQQVHVTIAENGQVAID-LYKSHD 921
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
FD MD QMP MDG++AT IR +++++ +PI+AMTA+V
Sbjct: 922 FDGILMDCQMPVMDGYEATEFIRQ---KLDDK-----------------QIPIIAMTANV 961
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
++ E+ GM+D ++KP + +++ +A++
Sbjct: 962 MERDKEKAKNAGMNDIIAKPIDVGAMFSTLAKWI 995
>gi|117922447|ref|YP_871639.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
gi|117614779|gb|ABK50233.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
Length = 1626
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 191/611 (31%), Positives = 285/611 (46%), Gaps = 99/611 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K A+ A+ AKS FLA +SHEIRTPMN VLGMLQ++ T L Q Y A + K L+
Sbjct: 890 KQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAKSLL 949
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
L+ND+LD +KI++G+L+ + P + ++ ++ + S+ +E+ + +P +
Sbjct: 950 GLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAWL 1009
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+ D R +QI+ NL GN++KFT G + V L ++H++
Sbjct: 1010 LADQLRLQQILINLAGNALKFT-PHGQVIVG---------------------LECLRHEA 1047
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+ V S + D+G+GI E RIFT
Sbjct: 1048 ESVTVQFS----------------------------------IVDSGIGISEEQIERIFT 1073
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QA+SSTSR +GGTG+GL+IS+ LVELMGG++ S+ G GS F F +TF E +
Sbjct: 1074 GFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVMEVEA- 1132
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+P+ ++ G R LV+DD I E+ L V A+ A +
Sbjct: 1133 NPR--------ADLSGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQAT 1184
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE--T 1029
+ + Q +VL+D + D + GL MLK P + +L E
Sbjct: 1185 ANA--QQFDVVLMDWRMPDID-GLQTAEMLKNAG------TGSYTPLVVMLTAYGHEVIA 1235
Query: 1030 DRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089
+ + + V LTKP+ +L E K KP LL G +LVV+D
Sbjct: 1236 ESQHINNVPFVNFLTKPVTSQILAEAVLNAIEG--KTMDANPKPRSQRLLAGLTLLVVED 1293
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDK-LTPPHNFDACFMDLQMPEMDGFQATWQI 1148
N +NR V + L GA V + G V + L FDA MD+QMP++DG +AT +I
Sbjct: 1294 NQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRI 1353
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
R A G +PILAMTA+ QA ++C++ GM+ +VSKP +
Sbjct: 1354 R----------ADGRFD----------QLPILAMTANASQADKQECLEAGMNAHVSKPID 1393
Query: 1209 DEQLYTAVARF 1219
+QL + R
Sbjct: 1394 MQQLLPNILRL 1404
>gi|443311633|ref|ZP_21041259.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
gi|442778362|gb|ELR88629.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
Length = 1049
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 187/613 (30%), Positives = 286/613 (46%), Gaps = 99/613 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE+A KSQFLA +SHEIRTPMN ++G+ +L+ +L Q D+ T +S L+
Sbjct: 402 KVAAESATRLKSQFLANMSHEIRTPMNAIVGLTDILLTMQLTPQQQDFVNTIQSSSDTLL 461
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
LIND+LD +KIESG+LE E F+L D ++ L L + KA +K IELA ++ VP ++
Sbjct: 462 MLINDILDLSKIESGKLELEQYSFNLRDFVEESLDLLAFKAAEKNIELAYLIAPEVPNLL 521
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+ D R RQI+ NL+ N++KFT G + V V K+ K
Sbjct: 522 VADVIRLRQILVNLLSNAVKFT-STGEVIVLV-----TARKLQTPKK------------- 562
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
NT++ K V+DTGVGIPLE Q R+F
Sbjct: 563 ----------------------------NTIDTHYEFKF--AVKDTGVGIPLERQHRLFK 592
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F Q DSST+R YGGTG+GL+I + L E MGG++ S+ GSTF FT+ + +
Sbjct: 593 SFSQVDSSTTRQYGGTGLGLAIGKQLSEKMGGQMWCESQANCGSTFYFTIIAPAAANSQI 652
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+ D + +G + L++DD ++ Q M S A L
Sbjct: 653 LVE-----QDELQLQGKKVLIVDDNGTNRQILILQTQFWGMMPQAVESGNEALKLLQKQS 707
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
L ++D + + GL L + + ++NLP + L + + ++
Sbjct: 708 -------FDLAILDMQMPHMD-GLTLAIKIHEYLP------TKNLPLVLLTSIDKGQIEK 753
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPE------SSKKLQQKRKKPSLGHLLKGKQIL 1085
+ +++KP++ L + ++ L +++ P + L IL
Sbjct: 754 QARTNANFAAVISKPIKQIHLCNVLNQILNNKSVILTTPTLPRQKTTPIVALPLS---IL 810
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
+ +DN+VN++VA L++ G G + L H +D MD+QMP+MDG AT
Sbjct: 811 LAEDNIVNQKVALHLLQQLGYAADVAKDGLEVLAALNHQH-YDVILMDVQMPKMDGLAAT 869
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
QI IAS I+AMTA+ +Q E+C+ GMDDY+SK
Sbjct: 870 RQI----------IASHRVRPR-----------IIAMTANAMQGDREECLNAGMDDYLSK 908
Query: 1206 PFEDEQLYTAVAR 1218
P +QL A+++
Sbjct: 909 PIRLDQLAAALSK 921
>gi|419361391|ref|ZP_13902604.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13D]
gi|378201594|gb|EHX62037.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13D]
Length = 918
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 190/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIIT+LVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITSLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|419413942|ref|ZP_13954587.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15E]
gi|378258398|gb|EHY18221.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15E]
Length = 918
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 190/623 (30%), Positives = 292/623 (46%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GS F
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSPF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|294637606|ref|ZP_06715886.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
gi|451965956|ref|ZP_21919211.1| two-component histidine kinase BarA [Edwardsiella tarda NBRC 105688]
gi|291089236|gb|EFE21797.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
gi|451315205|dbj|GAC64573.1| two-component histidine kinase BarA [Edwardsiella tarda NBRC 105688]
Length = 934
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 193/630 (30%), Positives = 299/630 (47%), Gaps = 113/630 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T L A Q+
Sbjct: 263 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTPLSATQI 322
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY T S +L+S+INDVLD +K+E+G+L E +PF L + +D V +L + A+ KG+
Sbjct: 323 DYLHTIERSANNLLSIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGL 382
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + V + VPE V+GDP R +Q++TNL+GN+IKFT+ KG+I D+R
Sbjct: 383 ELTLNVRNDVPEHVLGDPMRLQQVLTNLLGNAIKFTE-KGNI--------DIR------- 426
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+ ++SLN+ ++L V V DT
Sbjct: 427 -IEQRSLNT---------------------------------------QAVELEVQVHDT 446
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S +R +GGTG+GL I++ L+ MGG+I F S+P GSTF
Sbjct: 447 GIGISERQQSQLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTF 506
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + E N P +P + G L I+ + A+ T + +
Sbjct: 507 WFHIRL---ELNHNAPPAS--LP-LERLDGQTLLYIESNPVAAQCT----------LDML 550
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
L +Y C PQ A V+ D GL + L + + L + L
Sbjct: 551 KVTPLEVTY----C-----PQFAQVIPDSHYDILLFGLPVQTSLTSEHMQEKLSRALRLA 601
Query: 1018 -KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED---PESSKKLQQKRKKP 1073
++ L S + D D LK+ GI L KPL S L+ ++ P + + + +
Sbjct: 602 DRVILALPSHTLHDSDTLKARGIRRCLFKPLASSRLLPALLDNALPPRAPQVISPSGDRL 661
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L ++ VDDN N ++ L + G A+ D MD
Sbjct: 662 PL-------TVMAVDDNPANLKLIGALLGEQVQHTLLCHSGEEALAA-ARDRPLDIILMD 713
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMPEMDG + T ++R + I+ H PI+A+TA + E+
Sbjct: 714 IQMPEMDGIRTTERLR--QQPIH------------------AHTPIIAVTAHALNGERER 753
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
++ GMDDY++KP ++ +L + R+ G
Sbjct: 754 LLRAGMDDYLAKPIDENRLRQLLTRYSAGG 783
>gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
Length = 1397
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 210/636 (33%), Positives = 316/636 (49%), Gaps = 114/636 (17%)
Query: 606 HEMMELKAR--AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTA 663
HE L AR AEAA+ AKS+FLA +SHEIRTPMNGV+GM ++L++T L Q +AQTA
Sbjct: 855 HETALLDARLAAEAANRAKSEFLANMSHEIRTPMNGVIGMTRLLLNTSLAEEQRSFAQTA 914
Query: 664 HNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYV 723
SG+ L+++IND+LD +KIE+G+LE E + F L +LD+ ++ + KA KG+E ++
Sbjct: 915 LASGESLLTVINDILDFSKIEAGKLELEEISFDLRLLLDDFAAIMAVKAGDKGLE---FI 971
Query: 724 SDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKS 783
+P+V P RF +G+ + Q + +LA
Sbjct: 972 CAALPDV----PVRF-------IGDPDRIRQ------ILTNLAG---------------- 998
Query: 784 LNSVQ--HKSD-KVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
N+V+ HK + VY +L L T+ E L R +V+DTG+G
Sbjct: 999 -NAVKFTHKGEVAVYVSL-----------------LRETDE-EVLVRF----SVKDTGIG 1035
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
IP E R+F F Q D+S +R YGGTG+GL+ISR LVELM GEIG S+ G GS F FT
Sbjct: 1036 IPREKLDRLFRSFTQVDASMTRKYGGTGLGLAISRQLVELMSGEIGVNSQSGIGSEFWFT 1095
Query: 901 VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
++ ++N + QY D G R LV+DD + + R L + V +
Sbjct: 1096 LSL---KKNIFPSENGQYPLD--SITGTRLLVVDDNAENRNMLRMLLTSWGVRVSEVSCA 1150
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
A L ++A++ ++ D GL+L +K + +
Sbjct: 1151 STAIERLRQAAEEGDPFRIAIIDMEMPEID---GLMLGRSIKDETALADTAL-------- 1199
Query: 1021 LLATSISET-DRDELKSDGIVTLLTKPLRLSVLIGCFQE-------DPESSKKLQQKRKK 1072
L+ SI D ++L+ G + L KP+R S L E DP +++ LQ+K
Sbjct: 1200 LMMNSIGRRPDNEKLRRSGFFSFLVKPVRQSELYNTVSEVLFSRDIDPCNAESLQEKLAA 1259
Query: 1073 PS--LGHLLKGKQ------ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
S L + ++ IL+ +D+ VN+ V G L K G +V V G+ A+ +L
Sbjct: 1260 GSVTLSEAVDSEKNDSPVRILLAEDSAVNQLVVTGILSKLGYVVDPVFNGQEALARLR-E 1318
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
+D MD+QMPEMDG +AT IR ++SA + + VP++A+TA
Sbjct: 1319 FAYDLVIMDIQMPEMDGLEATRIIRD------------QASAVLRHD-----VPVIALTA 1361
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ E C++ GM+DYVSKP + L + ++
Sbjct: 1362 HAMHGDREICLQSGMNDYVSKPIDPPALIGVIKKWL 1397
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN----FDACFMDL 1134
+ G ++LVVDDN NR + L G V+ V C A+++L F +D+
Sbjct: 1115 ITGTRLLVVDDNAENRNMLRMLLTSWGVRVSEVSCASTAIERLRQAAEEGDPFRIAIIDM 1174
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
+MPE+DG L I ++ A +++ M ++G + NE+
Sbjct: 1175 EMPEIDGLM-------LGRSIKDETALADTALLMMNSIGR-------------RPDNEKL 1214
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+ G ++ KP +LY V+ S
Sbjct: 1215 RRSGFFSFLVKPVRQSELYNTVSEVLFS 1242
>gi|359462140|ref|ZP_09250703.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris sp. CCMEE 5410]
Length = 826
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 195/619 (31%), Positives = 292/619 (47%), Gaps = 101/619 (16%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
+ E A+AA++AKS+FLA +SHEIRTPMN V+GM +L DT LD Q D+ +T SG
Sbjct: 296 LQESSQAAQAANLAKSEFLAMISHEIRTPMNAVIGMTDLLKDTHLDPHQQDFVETIRTSG 355
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+++IND+LD +KIESG+LE E PF L ++ L + +SKA KG+ELA +
Sbjct: 356 ESLLNIINDILDFSKIESGKLELELHPFPLSTCIEEALDIVNSKATAKGLELAYLIEPGT 415
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P + GD R RQI+ NL+GN++KFT D G + V++ S DV + +
Sbjct: 416 PNHIQGDANRLRQILVNLLGNAVKFTAD-GEVIVTI-------SARDVATAEMTPEVPLF 467
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
H +LL V+DTG+GI E Q
Sbjct: 468 LH---------------------------------------ELLFEVKDTGIGIAPEHQQ 488
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
++F F Q DSS +R YGGTG+GL+IS+ L ELMGG I S+ G GS F FT+
Sbjct: 489 KLFQSFCQLDSSITREYGGTGLGLAISKQLCELMGGTIWVESQVGIGSRFFFTIA----- 543
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
S P + + S+F+ R L+++D + ++ +Q + +A+S A +++
Sbjct: 544 -ASALPGLEDHRATESQFQNKRVLIVEDNASTGQILCQQVQAWGLVPTLASSGLEALAWV 602
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+ L L + W + L L Q I LP I L A I
Sbjct: 603 KKERFDVAIADLQLPTM---TWSR-----LLSELTQNH------IQAPLPIIGLCA--IG 646
Query: 1028 ETDRDELKSDGIVTLLTKPLR-------LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK 1080
E+ + L+KP++ L + Q D + + Q KP+ +
Sbjct: 647 ESAAVWQYQPLLSASLSKPVKQFRLYQTLLKALSTHQSD-LTQPSISQPPPKPAPSSV-- 703
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+ILV +DN++N++V L + G V G + L ++D MD+QMPEMD
Sbjct: 704 --RILVAEDNVINQKVILKLLDRLGYQADLVTNGLEVLTALQ-EQSYDVVLMDVQMPEMD 760
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G I + +S E + H I+AMTA+ +Q E + GMD
Sbjct: 761 G-----------------ITTAQSICEQWDKTTRPH--IVAMTANTMQGDRESYLAAGMD 801
Query: 1201 DYVSKPFEDEQLYTAVARF 1219
DY++KP + L ++ F
Sbjct: 802 DYIAKPIRLKGLEQILSEF 820
>gi|259909469|ref|YP_002649825.1| hybrid sensory histidine kinase BarA [Erwinia pyrifoliae Ep1/96]
gi|224965091|emb|CAX56623.1| Signal transduction histidine-protein kinase [Erwinia pyrifoliae
Ep1/96]
Length = 909
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 188/616 (30%), Positives = 289/616 (46%), Gaps = 124/616 (20%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L++ Q DY T S +L+
Sbjct: 283 KRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTMLNSTQRDYLHTIERSANNLL 342
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+INDVLD +K+E+G+L E +PF L LD V+ L + A++KG+EL + + VP+
Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDP R +QII NL+GN+IKFT+ G+I D+R +EK
Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFTE-SGNI--------DIR---------VEK--------- 435
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
++ N +M +L V + DTG+GI + Q ++F
Sbjct: 436 ----------------RALSNNRM-------------ELEVQIHDTGIGISEKQQSKLFQ 466
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR +GGTG+GL I++ LV MGGEI F S GSTF F + +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHINLELNPNAAS 526
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
DP+ V G ++ + A+ L M V + S+ L+ C
Sbjct: 527 DPRIMDCV------EGQHLAYVEPNAAAAKAVMEMLNATPMQVSYSPSL----DELAQDC 576
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI-SRNLPKIFLLATSI---- 1026
+L L +V + LEI L I A S+
Sbjct: 577 YDVLLMGLPVV-----------------------QGHSLEIDEEQLTPILQRANSVIMAL 613
Query: 1027 ---SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQ 1083
+ ++LK+ G+ L KPL ++ L+ P ++ +P L +
Sbjct: 614 PFQMQIYAEDLKARGVTACLIKPLSMTRLL------PVLVDHHHRRDMQPQAERTLLPLR 667
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
++ VDDN N ++ L++ A + D G AA+ + H D MD+QMP++DG +
Sbjct: 668 VMAVDDNPANLKLIGALLEEQVADIVLCDSGEAAIAQARLQH-LDIILMDIQMPDIDGIR 726
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
A+ +IR L N PI+A+TA + +Q MK GM+DY+
Sbjct: 727 ASERIRELPQHTN--------------------TPIVAVTAHAMDGERQQLMKAGMNDYL 766
Query: 1204 SKPFEDEQLYTAVARF 1219
+KP ++++L +AR+
Sbjct: 767 AKPIDEQKLSRLLARY 782
>gi|359413616|ref|ZP_09206081.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
gi|357172500|gb|EHJ00675.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
Length = 940
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 184/616 (29%), Positives = 303/616 (49%), Gaps = 102/616 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + K +AEAA++AKSQF+A +SHEIRTPMNG+ G L++L T+L Q ++ + A ++
Sbjct: 307 ELYKAKEQAEAANIAKSQFIANMSHEIRTPMNGIFGFLELLQSTDLSTEQREFIREAKSA 366
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ ++ND+LD +KIE+ +L E + F+L +++ +SL + KA KGIEL +
Sbjct: 367 SDILLDIVNDILDFSKIEAKKLTMENIKFNLRTTIEDAVSLIAPKAATKGIELYAMIKSG 426
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VPE VIGDP R RQI+ NL+ N++KFT + G I VSV LE+ N
Sbjct: 427 VPEEVIGDPSRLRQILNNLISNAVKFTTE-GEISVSVSY--------------LEEE-NE 470
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ + +V +T G D K +++F D + T + G TG
Sbjct: 471 MALLNFEVKDTGIGIRKEDINKIFKSFSQADASTTRKYGG----------TG-------- 512
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+GL+I LV++MGGEI S G GSTF F V
Sbjct: 513 ----------------------LGLAICNELVKMMGGEIWAQSVFGEGSTFKFNVRLKIA 550
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+R Q++ D +F+ + L++DD + HL++ + + A A +
Sbjct: 551 KR----ANKQKF--DFEKFKNINVLIVDDNENNRNIFSSHLEKTGLNIFQAEGATSAITA 604
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
+ +T +AL+ D ++ + Y L R + ++++ ++ LL +
Sbjct: 605 IISKANTENKINIALI-------DYQMPGMNGYELATTLR--TMPFAKDI-QLILLTSVT 654
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK------ 1080
+ D +K G TLL KP++ L+ C + + L+ + ++ + H +K
Sbjct: 655 QKVDIKSIKEYGFSTLLAKPVKKDDLLSCIAK----TLGLENEEEQAIIKHNIKNFNNAL 710
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+IL+V+DN VNR++ LK G A+D ++ ++D FMD QMP MD
Sbjct: 711 NPKILLVEDNEVNRKIVIRMLKSRNMTCDVAINGSDALDAVS-KKDYDVVFMDCQMPVMD 769
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G+++T +IRHLE G+ H I+AMTA+ + E+C+K GMD
Sbjct: 770 GYESTARIRHLE---------GDKK----------HTTIIAMTANAMAGDCEKCIKAGMD 810
Query: 1201 DYVSKPFEDEQLYTAV 1216
Y+SKP + ++++ +
Sbjct: 811 AYISKPIDFDKMFKMI 826
>gi|411010658|ref|ZP_11386987.1| hybrid sensory histidine kinase BarA [Aeromonas aquariorum AAK1]
Length = 903
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 189/622 (30%), Positives = 292/622 (46%), Gaps = 107/622 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + L+ T L +Q
Sbjct: 267 LEQIEIQNVELDMAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTSLTPSQT 326
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY QT S ++L+ +IND+LD +K+E+G+L+ E +PF L D L+ + L A+ K +
Sbjct: 327 DYMQTIEKSARNLLGIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQL 386
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL++ V VP+ + GDP R +Q++TNL GN+IKFT+ R VDV+
Sbjct: 387 ELSLQVDAEVPDYLTGDPMRLQQVLTNLTGNAIKFTE---------------RGNVDVR- 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+E++ +LSG +++L V + DT
Sbjct: 431 --IEQT------------GSLSG-------------------------NKVRLNVLIRDT 451
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI E Q ++F F QADSS SR YGGTG+GL I++ LV+ MGG+I F SE G GS F
Sbjct: 452 GIGISEEQQRQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSVF 511
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
SF++ + P Q + +G R +++ L ++ VH
Sbjct: 512 SFSLDL------EVSPLPQTDRLPLDRIQGKRVWLLEPDPFSHSAICALLAEWQLQVH-- 563
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
L+ + +V+I +V R GL+ +N
Sbjct: 564 --------SLTGDAPWPEMSSQDMVIIGSGTQHSPQQVV--------ARLDGLDGQQN-- 605
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH 1077
+L +S + + + + G L+KP+ L+ PE+++ P
Sbjct: 606 -TIVLLSSHEPSLYEAMLAHGAQHCLSKPINHRKLLHALL-SPEAARSTPLPEPSPRSVQ 663
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
+K +L VDDN N ++ LK+ + V G+ AV +L FD FMD+QMP
Sbjct: 664 EIK---VLAVDDNAANLKLIAAMLKEMVSQVVVCKNGKEAV-RLAQSQPFDIIFMDIQMP 719
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG AT IR +N + PI+A+TA I E+ ++
Sbjct: 720 IMDGISATQAIR--SQSLNTE------------------TPIVAVTAHAIPGERERLIRQ 759
Query: 1198 GMDDYVSKPFEDEQLYTAVARF 1219
GMDDY++KP ++ L + F
Sbjct: 760 GMDDYLAKPIDEAMLAKLITDF 781
>gi|254417240|ref|ZP_05030985.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196176046|gb|EDX71065.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1359
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 204/631 (32%), Positives = 293/631 (46%), Gaps = 109/631 (17%)
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
LVG I +IAQ ++ K AE A+ KS FLA +SHEIRTPMN V+GM
Sbjct: 696 LVGTITDITDKKIAQ-----EQLKAAKEEAETANRTKSDFLAMMSHEIRTPMNAVIGMTS 750
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
+L+DT+L A Q ++ NS L+++IND+LD +KIESG+L E PF L ++ L
Sbjct: 751 LLLDTQLTAQQGEFVDIIRNSSDALLTIINDILDFSKIESGKLNLEEQPFDLRACIEESL 810
Query: 706 SLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
L SSKA KGIELA + ++PE ++VG+ + Q + V+L
Sbjct: 811 ELLSSKARDKGIELAYLMDSQIPE--------------SIVGDVTRLRQ------ILVNL 850
Query: 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQL 825
+ + D V+ S+ S++
Sbjct: 851 VSNAVKFTETGDVVI--SVTPTAEISEE-------------------------------- 876
Query: 826 GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
+I+L V DTG+GI R+F PF Q D+ST+R YGGTG+GL+IS+ L ELMGG++
Sbjct: 877 -QIRLQFAVRDTGIGISRTRMDRLFKPFSQVDASTTRQYGGTGLGLAISQRLSELMGGKM 935
Query: 886 GFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRY 945
SE G GSTF FTV T +S +Q + D R L+++D S ++
Sbjct: 936 WVESEEGVGSTFYFTVIATPVSSDSEPDNREQVLSDK------RLLIVEDNSATRQMLTE 989
Query: 946 HLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005
Q E+ V S A +L T + LA ++ + W ++ Q R
Sbjct: 990 QAQSFEIQVEATASTTEALGWLK-TGKRFDIAILASQILQMENWS---------LITQIR 1039
Query: 1006 RKGGLEISRNLPKIFLLATSISETDRDE---LKSDGIVTLLTKPLRLS----VLIGCFQE 1058
+ +NLP I L ET D S I L KP++ S +L+ +
Sbjct: 1040 QHPH---CQNLPIIILGLIGQVETHSDTGLPNPSRAIAGYLHKPIKQSQLYNILVNILTQ 1096
Query: 1059 DPESSKKLQQKRKK--PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRA 1116
+ +K + K P+ H K IL+ +DN+VN++VA LK+ G V G
Sbjct: 1097 EVSVPRKTRSHSSKYDPTFAHKFPLK-ILLAEDNVVNQKVAVNMLKRLGYRPDSVANGLE 1155
Query: 1117 AVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH 1176
+ L ++D MD+QMPEMDG AT QI Q SG +
Sbjct: 1156 VLQALH-RQSYDVVLMDIQMPEMDGLTATQQIC--------QEFSGSARPR--------- 1197
Query: 1177 VPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
I+AMTA+ +Q E+C+ GMDDY+SKP
Sbjct: 1198 --IIAMTANAMQGDREECLAAGMDDYMSKPI 1226
>gi|387872447|ref|YP_005803829.1| sensor histidine kinase/response regulator [Erwinia pyrifoliae DSM
12163]
gi|283479542|emb|CAY75458.1| sensor histidine kinase/response regulator [Erwinia pyrifoliae DSM
12163]
Length = 924
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 188/616 (30%), Positives = 289/616 (46%), Gaps = 124/616 (20%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L++ Q DY T S +L+
Sbjct: 298 KRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTMLNSTQRDYLHTIERSANNLL 357
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+INDVLD +K+E+G+L E +PF L LD V+ L + A++KG+EL + + VP+
Sbjct: 358 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 417
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDP R +QII NL+GN+IKFT+ G+I D+R +EK
Sbjct: 418 IGDPLRMQQIIVNLLGNAIKFTE-SGNI--------DIR---------VEK--------- 450
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
++ N +M +L V + DTG+GI + Q ++F
Sbjct: 451 ----------------RALSNNRM-------------ELEVQIHDTGIGISEKQQSKLFQ 481
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR +GGTG+GL I++ LV MGGEI F S GSTF F + +
Sbjct: 482 AFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHINLELNPNAAS 541
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
DP+ V G ++ + A+ L M V + S+ L+ C
Sbjct: 542 DPRIMDCV------EGQHLAYVEPNAAAAKAVMEMLNATPMQVSYSPSL----DELAQDC 591
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI-SRNLPKIFLLATSI---- 1026
+L L +V + LEI L I A S+
Sbjct: 592 YDVLLMGLPVV-----------------------QGHSLEIDEEQLTPILQRANSVIMAL 628
Query: 1027 ---SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQ 1083
+ ++LK+ G+ L KPL ++ L+ P ++ +P L +
Sbjct: 629 PFQMQIYAEDLKARGVTACLIKPLSMTRLL------PVLVDHHHRRDMQPQAERTLLPLR 682
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
++ VDDN N ++ L++ A + D G AA+ + H D MD+QMP++DG +
Sbjct: 683 VMAVDDNPANLKLIGALLEEQVADIVLCDSGEAAIAQARLQH-LDIILMDIQMPDIDGIR 741
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
A+ +IR L N PI+A+TA + +Q MK GM+DY+
Sbjct: 742 ASERIRELPQHTN--------------------TPIVAVTAHAMDGERQQLMKAGMNDYL 781
Query: 1204 SKPFEDEQLYTAVARF 1219
+KP ++++L +AR+
Sbjct: 782 AKPIDEQKLSRLLARY 797
>gi|423199766|ref|ZP_17186348.1| hypothetical protein HMPREF1171_04380 [Aeromonas hydrophila SSU]
gi|404628844|gb|EKB25615.1| hypothetical protein HMPREF1171_04380 [Aeromonas hydrophila SSU]
Length = 903
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 192/622 (30%), Positives = 293/622 (47%), Gaps = 107/622 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + L+ T L +Q
Sbjct: 267 LEQIEIQNVELDMAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTSLTPSQT 326
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY QT S ++L+ +IND+LD +K+E+G+L+ E +PF L D L+ + L A+ K +
Sbjct: 327 DYMQTIEKSARNLLGIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQL 386
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL++ V VP+ + GDP R +Q++TNL GN+IKFT+ R VDV+
Sbjct: 387 ELSLQVDAEVPDYLTGDPMRLQQVLTNLTGNAIKFTE---------------RGNVDVR- 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+E++ +LSG +++L V + DT
Sbjct: 431 --IEQT------------GSLSG-------------------------NKVRLNVLIRDT 451
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI E Q ++F F QADSS SR YGGTG+GL I++ LV+ MGG+I F SE G GS F
Sbjct: 452 GIGISEEQQRQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSVF 511
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
SF++ + P Q + +G R +++ L ++ VH
Sbjct: 512 SFSLDL------EVSPLPQTDRLPLDRIQGKRVWLLEPDPFSHSALCALLAEWQLQVH-- 563
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
S SD + Q +V+I +V R GL+ +N
Sbjct: 564 -------SLTSDAPWPEMSSQ-DMVIIGSGTQHSPQQVV--------ARLDGLDGQQN-- 605
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH 1077
+L +S + + + + G L+KP+ L+ PE+ + P
Sbjct: 606 -TIVLLSSHEPSLYEAMLAHGAQHCLSKPINHRKLLHALL-SPEAVRSAPLPEPSPRSVQ 663
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
+K +L VDDN N ++ LK+ + V G+ AV +L FD FMD+QMP
Sbjct: 664 EIK---VLAVDDNAANLKLIAAMLKEMVSQVVVCKNGKEAV-RLAQSQPFDIIFMDIQMP 719
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG AT IR +N + PI+A+TA I E+ ++
Sbjct: 720 IMDGISATQAIR--SQSLNTE------------------TPIVAVTAHAIPGERERLIRQ 759
Query: 1198 GMDDYVSKPFEDEQLYTAVARF 1219
GMDDY++KP ++ L + F
Sbjct: 760 GMDDYLAKPIDEAMLAKLITDF 781
>gi|432802971|ref|ZP_20036927.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE84]
gi|431347500|gb|ELG34388.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE84]
Length = 918
Score = 253 bits (647), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 291/623 (46%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L + P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPYQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|152993425|ref|YP_001359146.1| hypothetical protein SUN_1842 [Sulfurovum sp. NBC37-1]
gi|151425286|dbj|BAF72789.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 1046
Score = 253 bits (647), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 187/614 (30%), Positives = 295/614 (48%), Gaps = 117/614 (19%)
Query: 616 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIN 675
+ A+ AK FLA +SHEIRTP+NG++G Q+L T Q ++ NS +L++++N
Sbjct: 374 QEANEAKDLFLANMSHEIRTPLNGIVGFTQLLKSTNPTPDQEEFITVIENSSDNLLAIVN 433
Query: 676 DVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDP 735
D+LD +KI++ ++E E +PF+ + ++ + + ++A +K IEL +++ +P +IGDP
Sbjct: 434 DILDLSKIKADKIELESIPFNAIEKFESAIESYGARAAEKDIELGVFIDPGLPTPLIGDP 493
Query: 736 GRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVY 795
+ QII NL+ N+IKFT G I DVR
Sbjct: 494 TKISQIIVNLISNAIKFTSTHGSI--------DVR------------------------- 520
Query: 796 NTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855
++ N E+ + + +V DTG+GI E + +IF PF Q
Sbjct: 521 --------------------IEKMNETEE--NVTMKFSVRDTGIGITEEQKDKIFDPFSQ 558
Query: 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKW 915
AD STSR YGGTG+GL+IS L MGGE+ SE G GS F F++T +GE S+ P+
Sbjct: 559 ADVSTSRKYGGTGLGLAISVKLTAFMGGELDIESEEGEGSVFFFSLTLQKGESASVLPR- 617
Query: 916 QQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC---S 972
P ++ F A V+ DK+ + + R +LQ +V + Y D
Sbjct: 618 ----PVMNGFT--VATVLPDKNTESILAR-NLQE-----YVGATDAKFMIYDEDEILQEK 665
Query: 973 TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
T LP L+ +D + +R+ LE +L +L T+ + +
Sbjct: 666 TDALPD--LLFLDHSYF---------------QREDELEKYLDLYIRTILFTTSDKKHQI 708
Query: 1033 ELKSDGIVTLLTKPLRLSVLIGCFQ------EDPESSKKLQQKRKKPSLGHLLKGKQILV 1086
E D I ++ KP+ L+ + + S+ ++ K+ KG ILV
Sbjct: 709 ESLMDKIDKVVYKPVNLTKTYKALEVVYSEINTVDVSRHEEENEKR-----FFKGLNILV 763
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
+DN++N+++ L K G VT + G A+ L +N+D FMD+QMP M G AT
Sbjct: 764 AEDNVINQKLILNVLNKLGLQVTLANNGEEAL-HLRQKNNYDMIFMDVQMPVMGGIDATK 822
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
+I E E N + H+PI+A+TA+ +Q E+ +K GMDDY+SKP
Sbjct: 823 EILTYE-EKNRK----------------HHIPIVALTANALQGDKEKYIKAGMDDYLSKP 865
Query: 1207 FEDEQLYTAVARFF 1220
E L + ++F
Sbjct: 866 LVLEHLTQLLEKYF 879
>gi|407803932|ref|ZP_11150763.1| sensor/response regulator hybrid [Alcanivorax sp. W11-5]
gi|407022182|gb|EKE33938.1| sensor/response regulator hybrid [Alcanivorax sp. W11-5]
Length = 914
Score = 253 bits (647), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 186/594 (31%), Positives = 283/594 (47%), Gaps = 104/594 (17%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+FLA +SHEIRTP+NG++G ++L+ ++L Q DY T S + L+++IND+LD +
Sbjct: 269 KSEFLANMSHEIRTPLNGIIGFTRLLLRSDLSPRQRDYLSTIRKSSEALLAIINDILDFS 328
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+L + VP HLHD+++ V ++ + A +K +E A + VP ++GDP R RQ+
Sbjct: 329 KIEAGKLSLDRVPLHLHDLIEEVQTMLAPLAQEKSLEQAAIIYSDVPLQLLGDPLRIRQV 388
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+TNLV N+IKFT+ R V V+ + E+
Sbjct: 389 LTNLVNNAIKFTE---------------RGSVVVRAMLEEQR------------------ 415
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
+ + IK+ VT DTG GI + Q +F+ F Q D S +
Sbjct: 416 ---------------------DHMATIKVAVT--DTGNGITEDMQRELFSAFTQVDQSAA 452
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R GGTG+GL+IS+ LVE MGGEIG S G G+TF FT+ R +D ++ P
Sbjct: 453 RRIGGTGLGLAISKRLVEEMGGEIGVDSTAGRGATFWFTL------RVEID----EHTPV 502
Query: 922 VSEFRGLR--ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQL 979
FR R + V+ +++ A + YH+ R + V N A L + LP
Sbjct: 503 TDSFRAFRGASAVLVEQNEHARLGLYHMLR-AWGMEVTNLQ--ALDALHSALAADELPAA 559
Query: 980 ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGI 1039
++I + G L+ L+Q L + R P + +L RD +
Sbjct: 560 DFIVIGMSPGHDQ-GAALNDSLQQ------LCLGRGKP-VVVLCNQADRLSRDIPAMPSL 611
Query: 1040 VTLLTKP-LRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAE 1098
+L KP RL + + + + + P L ++VVDD+ N R+A
Sbjct: 612 CRILGKPATRLRLYDALLELSGQEDVSPRPRDDSPREADL----HVMVVDDHTGNLRLAT 667
Query: 1099 GALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ 1158
L++ G VT G A++ D FMD+QMP+MDG QAT Q+R LE +
Sbjct: 668 VFLEEMGVRVTACKSGADAIEAFA-AEPLDLVFMDIQMPDMDGLQATRQLRALEADAR-- 724
Query: 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
H PI+A+TA + + +Q ++ GMDDY+SKP + L
Sbjct: 725 -----------------HTPIIALTAHALASERQQLLQAGMDDYLSKPVSEGHL 761
>gi|365101447|ref|ZP_09332077.1| signal transduction histidine-protein kinase BarA [Citrobacter
freundii 4_7_47CFAA]
gi|363646997|gb|EHL86226.1| signal transduction histidine-protein kinase BarA [Citrobacter
freundii 4_7_47CFAA]
Length = 918
Score = 253 bits (647), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 193/629 (30%), Positives = 303/629 (48%), Gaps = 120/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD+V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-GGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F ++ L+P V+ D+S + L +E A
Sbjct: 513 WFHISL------DLNPN-----------------VLVDRSTTLCLAGKRLAYVEPN---A 546
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD---KEIGLVLHYMLKQQRRKGGLEISR 1014
+ Q LS+T V+ + + KD +D I + L L Q + L +
Sbjct: 547 TAAQCTLDILSET-PLEVIYSPSFSGLPKDHYDILLLGIPVTLREPLTMQHER--LASAA 603
Query: 1015 NLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE---SSKKLQQKR 1070
+ LLA ++ + ++LK G L KPL + L+ E + S+ L
Sbjct: 604 AMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHSADPLLVDE 663
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K ++ ++ VDDN N ++ L+ V D G AVD+ FD
Sbjct: 664 SKIAM-------TVMAVDDNPANLKLIGALLEDKVQHVVLCDSGHQAVDR-ARQMQFDLI 715
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A I L ++ P++A+TA +
Sbjct: 716 LMDIQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQ 755
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+++L+ + R+
Sbjct: 756 KEKLLSAGMNDYLAKPIEEDKLHNLLLRY 784
>gi|395229904|ref|ZP_10408214.1| signal transduction histidine-protein kinase BarA [Citrobacter sp.
A1]
gi|424730119|ref|ZP_18158717.1| hybrid sensory histidine kinase [Citrobacter sp. L17]
gi|394716579|gb|EJF22317.1| signal transduction histidine-protein kinase BarA [Citrobacter sp.
A1]
gi|422895331|gb|EKU35120.1| hybrid sensory histidine kinase [Citrobacter sp. L17]
Length = 918
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 193/629 (30%), Positives = 303/629 (48%), Gaps = 120/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD+V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-GGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F ++ L+P ++ID R+ +RL A
Sbjct: 513 WFHISL------DLNPN----------------VLID----RSTTLCLAGKRLAYVEPNA 546
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD---KEIGLVLHYMLKQQRRKGGLEISR 1014
+ Q LS+T V+ + + KD +D I + L L Q + L +
Sbjct: 547 TAAQCTLDILSET-PLEVIYSPSFSGLPKDHYDILLLGIPVTLREPLTMQHER--LANAA 603
Query: 1015 NLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE---SSKKLQQKR 1070
+ LLA ++ + ++LK G L KPL + L+ E + S+ L
Sbjct: 604 AMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHSADPLLLDD 663
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K ++ ++ VDDN N ++ L+ V D G AVD+ FD
Sbjct: 664 SKIAM-------TVMAVDDNPANLKLIGALLEDKVQHVVLCDSGHQAVDR-ARQMQFDLI 715
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A I L ++ P++A+TA +
Sbjct: 716 LMDIQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQ 755
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+++L+ + R+
Sbjct: 756 KEKLLSAGMNDYLAKPIEEDKLHNLLLRY 784
>gi|296272696|ref|YP_003655327.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
7299]
gi|296096870|gb|ADG92820.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
7299]
Length = 1183
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 178/636 (27%), Positives = 307/636 (48%), Gaps = 128/636 (20%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+V+N E+ K +AE + AKS+FLA +SHEIRTPMNG++GM + + T L+ Q +Y
Sbjct: 465 EVDNRTKELEIAKIKAEESTKAKSEFLANMSHEIRTPMNGIIGMSHLALQTRLNDKQKNY 524
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
+ K+L++++ND+LD +KIE+G+L E V F+L + ++N++++ +K +EL
Sbjct: 525 IEKIDICAKNLLNILNDILDFSKIEAGKLNLEKVEFNLFETIENIVNIIDFSVYEKNLEL 584
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+ V + GD R QI+TNL+ N+IKFT D G I V + +K+D+
Sbjct: 585 VVSYGTDVGKNFYGDNLRLAQILTNLLSNAIKFTND-GQIGVYI-------TKIDI---- 632
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
+R++ ++DTG+
Sbjct: 633 -------------------------NRYQ-----------------------FEIKDTGI 644
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
G+ E Q ++F F QAD T+R YGGTG+GL+IS+ L+ELM G+I S+ GS F F
Sbjct: 645 GLTEEQQTKLFQSFSQADGGTTRKYGGTGLGLTISKQLIELMNGKIWVESQINVGSRFIF 704
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
+ E ++D K+ + F+ + LV+DD E+ L+ + V+ +S
Sbjct: 705 QIDL---EDKNIDKKY-------NIFQNKKVLVVDDNKTWHEILESILKMFNIEVYCVDS 754
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL--- 1016
+ A +++ T L+L+D W+ G+E ++ +
Sbjct: 755 GKEAITHIKTTN-----INYDLILMD---WN-------------MPELDGIETTKKINEE 793
Query: 1017 ------PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKR 1070
P I ++++ + E+ + K GI L KP+ S+L + S K +
Sbjct: 794 YKDKKPPTIIMVSSFMQESIFELAKEAGIELFLNKPINPSILNDILSDLFLSDFKRKNIN 853
Query: 1071 KKPSLGHLLK-----GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP-P 1124
+K LK G IL+V+DN VN+ + G L+ + G+ A+ K+ P
Sbjct: 854 EKIIDEAQLKTISFEGNNILLVEDNKVNQEIIIGLLENSKINFDIANNGKEALLKVKENP 913
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
+ + MD+QMP MDG++AT +I+ + NE VPI+A+TA
Sbjct: 914 NKYHLILMDIQMPIMDGYEATREIKKINNE----------------------VPIIALTA 951
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+V+ +E+ GM ++++KP + ++LY+ ++++
Sbjct: 952 NVMHKDSEKTKAVGMQEHLNKPIKVDKLYSTLSKYL 987
>gi|398343867|ref|ZP_10528570.1| multi-sensor hybrid histidine kinase [Leptospira inadai serovar Lyme
str. 10]
Length = 856
Score = 253 bits (646), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 196/621 (31%), Positives = 305/621 (49%), Gaps = 135/621 (21%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS+FLA +SHEIRTPMNGV+GM ++L+D++L + +YA+ SG+ L+S+IND+LD
Sbjct: 341 AKSEFLAMMSHEIRTPMNGVIGMTELLLDSDLTGEKREYAEIIQKSGESLLSIINDILDY 400
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIESG L E F + + + L LF S A +KGI+L ++ VP+ +IGD R RQ
Sbjct: 401 SKIESGTLSLESKEFSILETAEETLDLFRSSAAEKGIDLICHIDPNVPDRIIGDKLRLRQ 460
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
++ NL GNS+KFT+ KG +F+S ++ EKS+ +++ V +T G
Sbjct: 461 VLINLFGNSLKFTE-KGEVFLSAEVSKK------------EKSICTIRF---SVRDTGIG 504
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
P + + + F +D ++T
Sbjct: 505 IPKEKQKQLFNPFYQVDTSST--------------------------------------- 525
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG--ERNSLDPKWQQY 918
R YGGTG+GLSIS L+++MGG I S+ G+TFSF + EG E+N Q
Sbjct: 526 -RKYGGTGLGLSISYRLIKMMGGRIWLESDINKGTTFSFEIQ-AEGVEEKN-------QV 576
Query: 919 VPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSV 975
VPD++ + GL + L+IDD + + + LQ L + ++S + A S L +
Sbjct: 577 VPDIN-YPGLENRKILIIDDNATNLRILSHQLQTLGLMTFSSSSKEEALSLL----DLGI 631
Query: 976 LPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK------IFLLATSISET 1029
LP+LAL L Y L G++I++ L + + LL++SIS+
Sbjct: 632 LPELAL---------------LDYNLSGS---NGVQIAQELRRKNFLFPLILLSSSISDI 673
Query: 1030 DRDELKSDGIVTLLTKPLR--------LSVLI-GCFQEDPESSKKLQQKRKKPSLGHLLK 1080
E+ + L+KP++ +LI G + S +K+K LL+
Sbjct: 674 KEKEIADQLFLRQLSKPVKKKELEQLVTEILITGTDKGKANRSSSYLEKQK-----DLLQ 728
Query: 1081 GK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
+L+ +DN +N +A+ L+K G G+ +++L FD MD+ MP
Sbjct: 729 STYPFDVLIAEDNEINLSLAKRILQKLGYHPVVAMNGKQVLNRLREAK-FDVVLMDVHMP 787
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EMDG QAT IR+ + S + + I+AMTA +Q E C++
Sbjct: 788 EMDGIQATQVIRN----------TWPQSEQPY---------IIAMTAAAMQGDREICLRA 828
Query: 1198 GMDDYVSKPFEDEQLYTAVAR 1218
GM+DYVSKP E+L A+ +
Sbjct: 829 GMNDYVSKPIVFEELIHALRK 849
>gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506]
gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506]
Length = 1823
Score = 253 bits (646), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 216/721 (29%), Positives = 326/721 (45%), Gaps = 154/721 (21%)
Query: 581 VVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGV 640
V ITL H+ + R Q+ + + + AE A+ AKS+FLAT+SHEIRTPMN V
Sbjct: 1000 VGITLAQAHLLETEVKRQEQLAEQNEALEQARQAAEVANRAKSEFLATMSHEIRTPMNAV 1059
Query: 641 LGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700
+GM +L+D +L Q D+ +T SG L+++IND+LD +KIESG+++ E PF L
Sbjct: 1060 IGMTGLLLDMDLTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKMDLEQHPFELRTC 1119
Query: 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIF 760
++ L L + KA++KG+ELA + VP V+GD R RQI+ NL+GN++KFT+ G I
Sbjct: 1120 IEESLDLLAPKASEKGLELAYLIDSSVPSKVLGDVTRLRQILVNLLGNAVKFTE-AGEIV 1178
Query: 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTN 820
VSV K+ E+ H + LS + V +
Sbjct: 1179 VSV-----------TARKISER------HGEELYKLPLSNYQVPVPY------------- 1208
Query: 821 TMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVEL 880
++ + V+DTG+GIP + R+F F Q D+ST+R YGGTG+GL+IS+ L E+
Sbjct: 1209 --------EIQIAVKDTGIGIPPDRMDRLFKAFSQVDASTTRQYGGTGLGLAISQRLSEM 1260
Query: 881 MGGEIGFVSEPG--------------------------------TGSTFSFTVTFTEGER 908
MGG++ VS+ +GS F FTV E
Sbjct: 1261 MGGKMWVVSKAAPVAGNSHSPPIGTRQSMAGSPPEHFVDTQILESGSIFYFTVIAQAVES 1320
Query: 909 NSLDPKWQQYVPDVSEF-RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
S V + EF +G R L++++ +V Q M A + A L
Sbjct: 1321 RS--------VEEPPEFIKGKRLLIVENHDTNRQVLIKLSQYWGMIPIAAATGAEAMQLL 1372
Query: 968 SDTCSTSVLPQLALVLIDKD-------VWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
L LA+ L D D + + E+G + L E R LP +
Sbjct: 1373 QHNPMVD-LAILAMNLADMDGIALANKIRNFELG---YSHLVNGSEPARTEPERRLPMVM 1428
Query: 1021 LLATSISET-DRDELKSDGIVTLLTKPLRLS----VLIGCF------QEDPE----SSKK 1065
+E + E LTKPL+ S VL+ F + PE SS
Sbjct: 1429 FTYLGKAEVWKKLENAEINFAGFLTKPLKQSQFYNVLLQIFGDGGVKNKKPENVDVSSVN 1488
Query: 1066 LQQKRKK---------------PSLGHLLK-----------GKQI--LVVDDNMVNRRVA 1097
L K+ P+ + ++ G Q+ L+ +DN+VN++VA
Sbjct: 1489 LGLKQSPHVKEQYPVNPTNETLPATSNAVRANISSSENGRNGNQLRILLAEDNLVNQKVA 1548
Query: 1098 EGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE 1157
L++ G G A++ L +D MD+QMP+MDG +AT R + E E
Sbjct: 1549 THLLERIGYRADIAGNGLEALEALR-KQFYDVVLMDVQMPQMDGLEAT---RRICQEWPE 1604
Query: 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
Q+ I+AMTA+ +Q E+C+ GM+DY++KP E+L A++
Sbjct: 1605 QL----------------RPRIIAMTANAMQGDREKCLAAGMNDYITKPVRREELANALS 1648
Query: 1218 R 1218
+
Sbjct: 1649 K 1649
>gi|288939999|ref|YP_003442239.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
gi|288895371|gb|ADC61207.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
Length = 1023
Score = 253 bits (646), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 205/640 (32%), Positives = 307/640 (47%), Gaps = 105/640 (16%)
Query: 588 GHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
GH+ R A++E K AE A+ AKS FL+ +SHEIRTPMN ++G ++
Sbjct: 245 GHLEELVATRTAELEA-------AKVAAEGANRAKSAFLSNMSHEIRTPMNAIIGYSHLI 297
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
L Q + ++S + L+ +IND+LD +KIE+ +L E F VLD+V +L
Sbjct: 298 RQEPLTPRQTEQLNRLNDSAQHLLQIINDILDLSKIEAEKLTLEARDFEPARVLDHVFNL 357
Query: 708 FSSKANQKGIELAIYVS-DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766
+ + K EL + V D VP + GD R QI+ NL+ N++KFT+ +G I ++V+
Sbjct: 358 VADQIQAK--ELNVLVDLDHVPLRLHGDGVRLGQILLNLISNAVKFTE-RGQIAIAVYPM 414
Query: 767 DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG 826
SV TL W W
Sbjct: 415 -------------------SVPLAGAADPETL--------WLRW---------------- 431
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
TV DTG+G+ E R+F F QAD ST+R YGGTG+GL+IS+ L ELMGG IG
Sbjct: 432 ------TVRDTGIGMTAEQLARLFRAFEQADGSTTRRYGGTGLGLAISKRLTELMGGRIG 485
Query: 887 FVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH 946
S+PGTGS F + F E R P P + + RG RALVIDD + +
Sbjct: 486 ASSQPGTGSEFWLEIPF-EPAREPAHPD-----PKLEDLRGRRALVIDDHPEARAILIHL 539
Query: 947 LQRLEM-AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005
L+ L + A VA ++ + + L+ ID + D + L+ R
Sbjct: 540 LESLGLRAEAVAGGLEGVSAVIEADRRGD---PYHLITIDWKMPDMD-------GLETVR 589
Query: 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSD-GIVTLLTKPLRLSVLIGCFQEDPESSK 1064
R L + R P++ L+ T+ + D + D G + +L KP+ S L + ++
Sbjct: 590 RLQALPV-RYHPEL-LMVTAYGDQLPDSCREDMGAIQVLAKPVTPSGLHDALAAALQGAR 647
Query: 1065 KL---QQKRKKPS-LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
L Q + P+ G L+G +ILV +DN +N+ V L+ GA VT + GR A+++
Sbjct: 648 DLPVVQDRVDTPADHGERLRGARILVAEDNEINQEVILQLLQATGARVTLAENGREALEQ 707
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
+ + +D MD+QMP MDG +AT IR + AE +PIL
Sbjct: 708 VC-ANAYDLVLMDVQMPVMDGLEATRAIR--------------ARAEY------RELPIL 746
Query: 1181 AMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
AMTA+ ++ QC++ GM+D+++KP E E+L +AR+
Sbjct: 747 AMTANAFESDRRQCIEAGMNDHLAKPIEPERLTETLARWL 786
>gi|358635242|dbj|BAL22539.1| periplasmic sensor hybrid histidine kinase [Azoarcus sp. KH32C]
Length = 1468
Score = 253 bits (646), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 198/635 (31%), Positives = 300/635 (47%), Gaps = 98/635 (15%)
Query: 595 INRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA 654
I R AQ++ E+++ K AE A A+S+FLA +SHEIRTPMN +LGML + + +EL
Sbjct: 698 IERTAQLKAANKELLKAKDIAEDAKRAQSEFLANMSHEIRTPMNAILGMLYLALKSELTP 757
Query: 655 AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQ 714
+Q +Y A + L+ +IND+LD +KIE+G+L+ E V F L VL+ + A
Sbjct: 758 SQHNYLAKAQGAAHSLLGIINDILDISKIEAGKLDIEQVEFGLDTVLEQLTDAVGYLAED 817
Query: 715 KGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVD 774
KG+E + +P ++GDP R QI+ NL GN++KFT+ R +V+
Sbjct: 818 KGVEFLVRYDPAIPSRLVGDPLRLGQILLNLCGNAVKFTE---------------RGEVE 862
Query: 775 VKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
+ +F+ +D T I L V V
Sbjct: 863 L------------------------------------SFRCIDAGET-----DILLQVFV 881
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF-VSEPGT 893
DTG+G+ E Q ++F F QAD ST+R +GGTG+GL+ISR L ELMGG I S+PG
Sbjct: 882 RDTGIGMTAEVQRKLFEKFTQADQSTTRRFGGTGLGLAISRNLAELMGGNIWVDDSQPGK 941
Query: 894 GSTFSFTVTFTEGERNSLDPKWQQYVPDVSE-----FRGLRALVIDDKSIRAEVTRYHLQ 948
G+T FT+ R + P+ Q ++ E G+R LV+DD E+ L+
Sbjct: 942 GTTMCFTM------RLRIAPQGQARQRELVERAGPLLEGIRVLVVDDNEASREILADMLR 995
Query: 949 RLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008
+ V A S A + L LVL+D W + G+ R G
Sbjct: 996 FFRLDVGTALSGAAALAALRGATEKPY----DLVLMD---W-RMPGMNGDEATALIHRDG 1047
Query: 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQ 1068
+ + PK+ ++ E + G+ L KP+ SVL+ +
Sbjct: 1048 AIP---HHPKVVMVTAYGREDVFRFAEQAGVDGFLIKPVSPSVLLDTILSVLGRGRIFGA 1104
Query: 1069 KR----KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
+ ++P+ L G ++L+V+DN +NR A L+ G V G AVD++
Sbjct: 1105 EERTGTREPTTAGRLAGARVLLVEDNDINREFATELLRSEGIEVDEARTGAEAVDRVQ-T 1163
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
++DA MD+QMP MDG +A +IR L +G E F +PI+AMTA
Sbjct: 1164 GDYDAVLMDIQMPVMDGLEAARRIRAL---------AGLPGCEAFA-----RLPIVAMTA 1209
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ E+ GM+D+V+KP E+L +A++
Sbjct: 1210 LAMTRDAEKSQAAGMNDHVTKPIAPERLMATLAKW 1244
>gi|421846716|ref|ZP_16279862.1| hybrid sensory histidine kinase BarA [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|411772046|gb|EKS55693.1| hybrid sensory histidine kinase BarA [Citrobacter freundii ATCC 8090
= MTCC 1658]
Length = 918
Score = 253 bits (646), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 193/629 (30%), Positives = 303/629 (48%), Gaps = 120/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD+V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-GGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F ++ L+P V+ D+S + L +E A
Sbjct: 513 WFHISL------DLNPN-----------------VLVDRSTTLCLAGKRLAYVEPN---A 546
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD---KEIGLVLHYMLKQQRRKGGLEISR 1014
+ Q LS+T V+ + + KD +D I + L L Q + L +
Sbjct: 547 TAAQCTLDILSET-PLEVIYSPSFSGLPKDHYDILLLGIPVTLREPLTMQHER--LANAA 603
Query: 1015 NLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE---SSKKLQQKR 1070
+ LLA ++ + ++LK G L KPL + L+ E + S+ L
Sbjct: 604 AMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQVNHSADPLLLDD 663
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K ++ ++ VDDN N ++ L+ V D G AVD+ FD
Sbjct: 664 SKIAM-------TVMAVDDNPANLKLIGALLEDKVQHVVLCDSGHQAVDR-ARQMQFDLI 715
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A I L ++ P++A+TA +
Sbjct: 716 LMDIQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQ 755
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+++L+ + R+
Sbjct: 756 KEKLLSAGMNDYLAKPIEEDKLHNLLLRY 784
>gi|254457369|ref|ZP_05070797.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|373867994|ref|ZP_09604392.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|207086161|gb|EDZ63445.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|372470095|gb|EHP30299.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
Length = 733
Score = 253 bits (645), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 195/677 (28%), Positives = 315/677 (46%), Gaps = 107/677 (15%)
Query: 542 LLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQV 601
++ +N++ + R ++ +K+K + + I + LL+ +F+ +I
Sbjct: 150 IISYANIELNEYIR-FQLALAYKKKVNSDYKYLQLIIYASIFILLMATLFYLFAVKIKNN 208
Query: 602 ENDY-HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
N E++E K AE + K+ FLA++SH+IRTPMNGV+GML +LM+++LD Q A
Sbjct: 209 INTLSRELVEAKEIAEESVKTKAIFLASMSHDIRTPMNGVIGMLGLLMNSKLDDTQKHQA 268
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
A +S K L+SLIND+LD +K+E+G+++ E++ F++ D L + + +A +KG+EL
Sbjct: 269 SLAKSSAKALLSLINDILDFSKVEAGKMDLEYIDFNIRDELGDFAEGIAFRAQEKGVELI 328
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
+ V+D ++ DPGR RQI++N+VGNSIKFT + F+++ DV D + ++
Sbjct: 329 LEVTDIEQNMIKADPGRIRQILSNIVGNSIKFTSEG---FIAIKAILDVTEPTDAR-LII 384
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
E S + + DK+ F VD
Sbjct: 385 EMSDSGIGIPEDKIDTLFDSFSQVD----------------------------------- 409
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
+ST+R YGGTG+GL+I L ELM G++ S+ G GS F+
Sbjct: 410 -----------------ASTTRKYGGTGLGLAIVEKLCELMNGKVEVKSDFGKGSIFTID 452
Query: 901 VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
++ + SL +P S + + L+IDD E + LQ M V+ A
Sbjct: 453 ISVELSQDRSL------AIPHNS-VKDKKILIIDDSKFSIEAMKKQLQHWGMKVYSAIDS 505
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
+ A L D + ID+ + D L + RK S KI
Sbjct: 506 KEALKMLQDDS-------FDIAFIDRVIPDMN-----SEELAKTIRKNTAYSSM---KII 550
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
++ + I D ++ GI KP L F++D S + ++ + P
Sbjct: 551 MMTSLIDRVDAISYRNIGIDGFFPKPATTKDLFKALDTLFKDDNFFSSENIEEEQDPIFE 610
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL-TPPHNFDACFMDLQ 1135
IL+V+DN+ N+ VA G L+ G + G A++ L + ++ FMD Q
Sbjct: 611 S-----NILLVEDNITNQLVANGMLEDFGLEADIANNGIEALEMLNSSSKKYNLIFMDCQ 665
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MPE+DG+ AT IR E + E + N +PI+AMTA+ +Q E+C
Sbjct: 666 MPELDGYGATQAIR------------AEQAGERYTN-----IPIIAMTANAMQGDQEKCR 708
Query: 1196 KCGMDDYVSKPFEDEQL 1212
GM DY++KP + E L
Sbjct: 709 SAGMSDYLAKPIDKELL 725
>gi|83312029|ref|YP_422293.1| sensor protein barA [Magnetospirillum magneticum AMB-1]
gi|82946870|dbj|BAE51734.1| Sensor protein barA [Magnetospirillum magneticum AMB-1]
Length = 1248
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 196/622 (31%), Positives = 295/622 (47%), Gaps = 120/622 (19%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A KS FLA +SHEIRTPMN ++GM + + T+LD Q DY + SG+ L+
Sbjct: 710 KDAAEDAARTKSDFLANMSHEIRTPMNAIIGMAHLALKTDLDPRQKDYVRKIQQSGQHLL 769
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+IND+LD +KIE+G+LE E HL VL+NV +L S KA KG+EL V VP +
Sbjct: 770 GIINDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEKATAKGLELLFDVGAGVPLDL 829
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GD R Q++ + + +
Sbjct: 830 MGDALRLGQVL--------------------------------------------INYAN 845
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG-RIKLLVTVEDTGVGIPLEAQVRIF 850
+ V T +G VV ME LG + L V DTG+G+ E + R+F
Sbjct: 846 NAVKFTEAGEIVV-------------AVRLMEDLGPDVMLRFEVRDTGIGLTDEQKARLF 892
Query: 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE-RN 909
F QAD+ST+R +GGTG+GL+IS+ L ELMGG +G S PG GSTF FT +G+ R
Sbjct: 893 QSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGVDSVPGQGSTFWFTARLGKGKPRA 952
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
L P+ +E +G R LV+DD V L + V +S A + D
Sbjct: 953 PLIPE--------AELQGRRMLVVDDNENARAVLVDMLSAMSFEVDAVDSGAKALDAIRD 1004
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL----ATS 1025
LP +V +D + D + GLE++ + I L
Sbjct: 1005 AVLD--LP-YDVVFLDWQMPDMD----------------GLEVAEQIHSIRLPFPPHLIM 1045
Query: 1026 ISETDRDEL----KSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL--- 1078
++ R+E+ ++ I +L KP+ + L S ++ + G +
Sbjct: 1046 VTAYGREEIIKGAQAADIGEVLIKPVSPAALFDSIMRVFASDQRRDEAEDVSEGGSVDHA 1105
Query: 1079 -LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
L+G ++L+V+DN +N+ VA L+ G V D G AV+K +D MD+QMP
Sbjct: 1106 ALRGLKVLLVEDNDLNQEVAGEILRDAGIEVEIADNGLIAVEK-ARAGVYDLILMDMQMP 1164
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG AT +IR L G+V L PI+AMTA+ +QA ++C++
Sbjct: 1165 VMDGVTATREIRRL------------------GHVDL---PIIAMTANAMQADRDKCLEA 1203
Query: 1198 GMDDYVSKPFEDEQLYTAVARF 1219
GM+D+++KP + + +++ ++R+
Sbjct: 1204 GMNDHIAKPIDPDTMFSTISRW 1225
>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
Length = 1820
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 212/698 (30%), Positives = 324/698 (46%), Gaps = 124/698 (17%)
Query: 551 GDPSRKHEMH-CR-FKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEM 608
G+P+ +H C+ F+Q P + A + I L + + ++ +
Sbjct: 1070 GEPNGAICLHQCKYFRQWTPEEIELLEAVAAQLGIALAQAQLLEQETRQREELTIKNFAL 1129
Query: 609 MELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGK 668
+ K AEAA+ AKS+FLA +SHEIRTPMN V+GM +L+DTEL + Q D+ +T SG
Sbjct: 1130 EQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELTSQQRDFVETVLTSGD 1189
Query: 669 DLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVP 728
L+S+IND+LD +KIESG+LE E PF + ++ V+ L ++KA QK IELA + +VP
Sbjct: 1190 ALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQVP 1249
Query: 729 EVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788
+ GD R RQI+TNL+ N+IKFT + G + VS VRS+ K
Sbjct: 1250 MQIAGDLTRLRQILTNLLNNAIKFTPE-GEVVVS------VRSQPSPNQK---------- 1292
Query: 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
N E + IK DTG+GI E
Sbjct: 1293 -----------------------------TKNCCEIIFTIK------DTGIGIAPETMDL 1317
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGE--------IGFVSEPG-------- 892
+F PF+QAD+S +R YGGTG+GL IS+ L E+MGG +G PG
Sbjct: 1318 LFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRGCVGGNPPPGWQRKNSIS 1377
Query: 893 -----TGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHL 947
TGSTF F++T L+ + + G R L++DD ++ R
Sbjct: 1378 SASVATGSTFYFSMTVPVVAHADLETS----ITSPVQLSGKRLLIVDDNPTNRQILRLQA 1433
Query: 948 QRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRR 1006
+ +M + A S A + + +A + DV E+ GL L ++Q+
Sbjct: 1434 EPWQMETYTAPSGAEALALIDQG--------MAFDIAILDVQMPEMDGLTLARQIRQRPS 1485
Query: 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPES 1062
++LP + L + +TD +++ L KP++ S VL P
Sbjct: 1486 ------YQHLPLVILTSWGQPDTDLSDIE---FAACLNKPIKQSQLFDVLAASLGNQPIR 1536
Query: 1063 SKKLQQKRKKPS--LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
+ + + + + L + + IL+ +D +VN++VA LKK G V G ++
Sbjct: 1537 ASVVPDRSAQVNSCLAQQIPLR-ILLAEDIVVNQKVALLILKKLGYRADVVANGLEVLEA 1595
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
L ++D MD+ MPEMDG +A+ +I Q S S I+
Sbjct: 1596 LQ-RQSYDVVLMDVNMPEMDGLKAS--------QIICQTWSPRSRPY-----------II 1635
Query: 1181 AMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
AMTA+ ++ E C+ GMD Y+SKP + E+L A+ +
Sbjct: 1636 AMTANAMRGDREACLAAGMDHYISKPLQLEELAKALGK 1673
>gi|450247767|ref|ZP_21901266.1| hybrid sensory histidine kinase BarA [Escherichia coli S17]
gi|449318017|gb|EMD08095.1| hybrid sensory histidine kinase BarA [Escherichia coli S17]
Length = 918
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 190/623 (30%), Positives = 292/623 (46%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ K +
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKEL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
>gi|402488931|ref|ZP_10835736.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium sp. CCGE 510]
gi|401812115|gb|EJT04472.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium sp. CCGE 510]
Length = 1125
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 201/657 (30%), Positives = 301/657 (45%), Gaps = 129/657 (19%)
Query: 584 TLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGM 643
T+ G + A + ++ + E+ L +RAEAAD AKS+FLA +SHEIRTPMNGVLGM
Sbjct: 550 TVSTGQHWVALFTDVTELMSREEELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGM 609
Query: 644 LQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDN 703
++L T LD Q + SG L+++IND+LD +KI++G+++ F + + +++
Sbjct: 610 AELLAKTNLDTRQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVED 669
Query: 704 VLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
V +L SS A +K IEL + + +P VIGD GRFRQI+TNLVGN++KFT+ +GH+FV V
Sbjct: 670 VATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTE-RGHVFVDV 728
Query: 764 HLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME 823
+ T++G
Sbjct: 729 G------------------------------FQTVAG----------------------- 735
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
G I + +EDTG+GIP E +F F Q D+S++R + GTG+GL+I+ LV+L GG
Sbjct: 736 --GEIMASIRIEDTGIGIPREKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGG 793
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
+ SE GS F+ + F L+PK P +G R LV+DD + +
Sbjct: 794 YLNVESEWSKGSVFTVNLPFAVAAAR-LEPK-----PLPINVQGARILVVDDNDVNRRIL 847
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
+ QL+ + LA++ D+ +VL Y +
Sbjct: 848 ---------------TEQLSLWGFDGVAAEGGGTGLAILEAAADLGITVDAVVLDYHMPD 892
Query: 1004 QRRKGGLEISR---------NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIG 1054
G +++R LP IFL + IS T+++ +G L+ KP R +VL
Sbjct: 893 M---NGADVARRLRADPRFAELPIIFLTSMDISGTEKEFAALNGHAHLM-KPARANVLRN 948
Query: 1055 CFQEDPESSK----------KLQQKRKKPSLGHLLKGKQ--------ILVVDDNMVNRRV 1096
E + + +LQ + P+ Q +LV +DN VN+ V
Sbjct: 949 TVVEVVRAGRVKQVSEAEIARLQAQAVVPAPPEPEPVPQQRATEFVDVLVAEDNEVNQIV 1008
Query: 1097 AEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEIN 1156
L+ G VD G AV H MD+ MP M+G +AT IR E
Sbjct: 1009 FTQILQGTGLSFLVVDNGELAVAAWE-RHTPRIIMMDVSMPVMNGHEATRTIRAREK--- 1064
Query: 1157 EQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
G H VPI+ +TA +++ + C+ GMDDY+SKP E L
Sbjct: 1065 ----------------GQGHRVPIIGVTAHALESDRDLCLDAGMDDYMSKPISPELL 1105
>gi|86138161|ref|ZP_01056736.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193]
gi|85825188|gb|EAQ45388.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193]
Length = 763
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 200/676 (29%), Positives = 313/676 (46%), Gaps = 139/676 (20%)
Query: 565 QKPPVPWTA------INASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAA 618
Q +PW A +N S+GV+ T + AA+ R + A+ A
Sbjct: 190 QVRKLPWYASREFWALNFSVGVLEDTFVERDEREAALERACE-------------DADIA 236
Query: 619 DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVL 678
+ AKS FLA +SHEIRTPMNGV+GM +++M+T+LD Q YA+T SG L+++IND+L
Sbjct: 237 NQAKSDFLANMSHEIRTPMNGVIGMAELIMETDLDEDQQIYAETISKSGTALLTIINDIL 296
Query: 679 DQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRF 738
+ +KIE+G++E PF+L +++V++L S +AN KG+E+ + +PE GD GR
Sbjct: 297 NFSKIEAGKVELNLAPFNLLTAIEDVVTLLSPRANAKGVEIILRYDPNLPEFFEGDVGRV 356
Query: 739 RQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTL 798
RQ+ITN++GN++KFT D G++ V V
Sbjct: 357 RQVITNIIGNAVKFT-DVGYVHVDV----------------------------------- 380
Query: 799 SGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858
SG K+ EN+ L + V DTG+GIP +F+ F Q DS
Sbjct: 381 SG------GKNSENY---------------SLTIKVADTGIGIPANRLEAVFSAFEQVDS 419
Query: 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQY 918
+R++ GTG+GL+IS L+ LMGGE+ S+ G GS F+ + ER +
Sbjct: 420 GATRSFEGTGLGLAISARLLALMGGEVAVASKAGEGSIFTVQLPLPRAERVG------EI 473
Query: 919 VPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQ 978
+ + F+GL L++DD + V L+ + A S A +SD
Sbjct: 474 KVNTTAFQGLTGLIVDDLELNRSVLTERLRAWGVDCLEAGSAIQALERISD--------- 524
Query: 979 LALVLIDKDVWDKEIGLVLHYMLKQQR-RKGGLEISRNLPKIFLLATS----ISETDRDE 1033
+E V ++L Q G E+++ + I ATS +S D
Sbjct: 525 ----------LRREGRSVDFFILDYQMPETDGCELAQRIRAIPAYATSPIVVLSAVDHAL 574
Query: 1034 LKSDGIV----TLLTKPLRLSVLIGC------FQEDPESSKKLQQKRKKPSLGHLLKGKQ 1083
+SD + KPLR++ L ++ P S + Q + S +L+K
Sbjct: 575 DRSDPNALQDFEIAQKPLRVAQLKQVLRRALHLEKQPLSVPQSSQATYQTS--NLVK--- 629
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+ +DN N+ V LK G +T G AV++ D MD+ MP MDG
Sbjct: 630 LLIAEDNRTNQLVVTRMLKDAGFDITIAANGVEAVERFKEVQP-DIILMDMMMPVMDGVA 688
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT +IR +E + I+A+TA+ +++ +CM+ GMDD++
Sbjct: 689 ATVKIREIERAARSR-----------------GCHIIALTANAMESHRNKCMRAGMDDFL 731
Query: 1204 SKPFEDEQLYTAVARF 1219
SKP + L + ++
Sbjct: 732 SKPINKKALIATIQKW 747
>gi|254413786|ref|ZP_05027555.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196179383|gb|EDX74378.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1038
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 242/809 (29%), Positives = 364/809 (44%), Gaps = 166/809 (20%)
Query: 476 LPQDATPEQRIEATLGYLG----ASYDVPSLVEKLLHQLASKQ-----------TIVVNV 520
+P+ TPEQ IEA L LG A ++ V+KL Q+ + Q V +
Sbjct: 188 VPRQLTPEQ-IEA-LEALGRQVIAQIELRLNVDKLERQMQALQKAENNYRSIFENAVEGI 245
Query: 521 YDTTNASAPIN-------MYGPDVTDTGLLRVSNLD---FGDPSRKHEMHCRFKQKPPVP 570
Y TT I+ +YG + + V+++ + DPS++ E R +Q+ V
Sbjct: 246 YQTTPDGHYISANPALARIYGYNSPAELIASVTDIGQQLYVDPSKRAEFINRMQQQGAVS 305
Query: 571 --------------WTAINA-SIGVVVITLLVGHIFHAAINRIAQ-------VENDYHEM 608
W NA ++ TLL + ++ I Q +E +
Sbjct: 306 HFEVQVYRRDRSLIWIMENARAVRDRNGTLLY---YEGSVEDITQQKQAQTALEQQNRAL 362
Query: 609 MELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGK 668
+ + AE A+ AKS+FLA +SHEIRTPMNGV+GM +L+DTEL Q +A+T NSG
Sbjct: 363 KDARQVAEKANKAKSEFLAMMSHEIRTPMNGVIGMTGLLLDTELTPDQRHFAETIRNSGD 422
Query: 669 DLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVP 728
L+++IND+LD +KIESG+L+ E PF L D +++ L L ++KA K +EL +P
Sbjct: 423 ALLTIINDILDFSKIESGKLDLEEQPFELRDCVEDALDLLAAKAAAKKLELGYRFDSHIP 482
Query: 729 EVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788
+ V GD R RQI+ NL+ N++KFT+ G I VSV
Sbjct: 483 DQVRGDVTRVRQILVNLLSNAVKFTE-AGEIVVSV------------------------- 516
Query: 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
K+ N P +R+ + V DTG+GI + R
Sbjct: 517 -TGRKLENEADSHPDSNRY---------------------HIQFAVNDTGIGIAPQRMHR 554
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGT--------------- 893
+F PF Q DSSTSR YGGTG+GL+I + L +MGG + +V GT
Sbjct: 555 LFKPFSQVDSSTSRQYGGTGLGLAICKQLSAMMGGTM-WVESHGTVAGNPPAGWQLSAEQ 613
Query: 894 ----GSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQR 949
GSTF F +T S+ Q V S G R L++DD + + +
Sbjct: 614 PSESGSTFYFMITV-----ESVAGAVAQRVDSPSCLSGKRLLIVDDNATNRDFLSRQAEA 668
Query: 950 LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009
M A+S A + + P L ++D + + GL L L+Q+
Sbjct: 669 WSMVTDTASSAAEAIALIEQE------PSFDLAILDMQMPQVD-GLSLAATLRQRPD--- 718
Query: 1010 LEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPE--SS 1063
+ LP I L + I E + + + D L KP++ SVL+ P S
Sbjct: 719 ---CQQLPLIMLTSIGIPEKELNAAQVD-FAAFLNKPIKQSQLYSVLVQTVGGMPTKIKS 774
Query: 1064 KKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP 1123
++ Q + + L ++ILV +DN+VN+ +A L++ G V G A++ L
Sbjct: 775 RRSQGVKLDSQMASRLP-RRILVAEDNLVNQLLAVRLLQRMGYRADVVSDGLEALEALH- 832
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
+D FMD+QMP MDG +AT +I N I+AMT
Sbjct: 833 RQPYDMVFMDVQMPHMDGLEATQRICQTWNAAT-------------------RPRIIAMT 873
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
A+ +++ ++C+K GMDDY+SKP E+L
Sbjct: 874 ANAMESDRQECLKAGMDDYISKPIRVEEL 902
Score = 44.7 bits (104), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 20/138 (14%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L GK++L+VDDN NR + + A+ + +FD +D+QMP+
Sbjct: 644 LSGKRLLIVDDNATNRDFLSRQAEAWSMVTDTASSAAEAIALIEQEPSFDLAILDMQMPQ 703
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
+DG +R + +P++ +T+ I +
Sbjct: 704 VDGLSLAATLRQRPD--------------------CQQLPLIMLTSIGIPEKELNAAQVD 743
Query: 1199 MDDYVSKPFEDEQLYTAV 1216
+++KP + QLY+ +
Sbjct: 744 FAAFLNKPIKQSQLYSVL 761
>gi|407778474|ref|ZP_11125738.1| hybrid sensory histidine kinase [Nitratireductor pacificus pht-3B]
gi|407299845|gb|EKF18973.1| hybrid sensory histidine kinase [Nitratireductor pacificus pht-3B]
Length = 824
Score = 253 bits (645), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 201/678 (29%), Positives = 317/678 (46%), Gaps = 122/678 (17%)
Query: 571 WTAINASIGVVVITLLV-GHIFHAAINRIAQVENDYHE----MMELKARAEAADVAKSQF 625
W + S+ +V LL+ G +F +NR+++ D H+ + K +A++AD KS+F
Sbjct: 232 WGLLGVSLAIVSACLLIAGRVFVPMMNRVSKAHQDLHDANISLASEKIKAQSADRTKSEF 291
Query: 626 LATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIES 685
LA +SHEIRTPMNGV+GM ++L T LD Q + SG L+++IND+LD +KI++
Sbjct: 292 LANMSHEIRTPMNGVMGMAELLARTNLDQRQAMFVDVIVKSGTALLTIINDILDFSKIDA 351
Query: 686 GRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNL 745
G+L+ + PF L + +++V +L S++ +K +EL + V +P IGD GRFRQ+ TNL
Sbjct: 352 GQLKLDTAPFKLGEAIEDVAALVSTRVAEKDLELIVRVDPDLPLSFIGDVGRFRQVATNL 411
Query: 746 VGNSIKFTQDKGHIFVSVHLADDVR-SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVV 804
VGN++KFT+ +GH+ + V + VR V V + + Q K D V+
Sbjct: 412 VGNAVKFTE-RGHVLIDV--SGTVRDGSALVTISVEDTGIGIPQDKLDVVF--------- 459
Query: 805 DRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTY 864
E F +D+++T R +
Sbjct: 460 ------EKFAQVDSSST----------------------------------------RRH 473
Query: 865 GGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE 924
GTG+GL+I+ LVELMGG + SE G GSTF+FT+ E + + PK DVS
Sbjct: 474 EGTGLGLAIASRLVELMGGSMQAKSEIGKGSTFAFTIPL-EVDHANCTPKTAPI--DVS- 529
Query: 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLI 984
G R VIDD I E+ L+ A S + ++L S + ++ V++
Sbjct: 530 --GSRVFVIDDNPINREILLEQLKSWGFECAAAESGAVGLAFLER--SVQLDARVDCVIL 585
Query: 985 DKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSD-GIVTLL 1043
D + D V +R + ++P + L TS+ + D L + GI L
Sbjct: 586 DYQMPDMNGADV-------AKRIKANPATADIPLVLL--TSVDQADTSRLAMECGIAAQL 636
Query: 1044 TKPLRLSVLIGCF---------QEDPESSKKLQQKRKKPSLGHLL------------KGK 1082
KP R S L+ D + + +Q + + L + + +G
Sbjct: 637 NKPTRSSALLETIVSVMQAARAGSDMPAPQPIQLRPAQTRLSNAVERGLSSSRSQRGEGL 696
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+LV +DN VN+ V L G G+ AV+ + MD+ MPEM+G+
Sbjct: 697 DVLVAEDNEVNQLVFSQVLDGLGLRYRIAGNGKTAVE-MHRAFRPKIMLMDVSMPEMNGY 755
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+AT IR E A+G+ H PI+ +TA ++ E+C+ GMDDY
Sbjct: 756 EATGAIRQTE------AATGD------------HTPIIGITAHALKGDREKCLDAGMDDY 797
Query: 1203 VSKPFEDEQLYTAVARFF 1220
+SKP ++L + R+
Sbjct: 798 LSKPISPQKLADMIERWM 815
>gi|404492663|ref|YP_006716769.1| sensor histidine kinase response regulator, Hpt domain-containing
[Pelobacter carbinolicus DSM 2380]
gi|77544744|gb|ABA88306.1| sensor histidine kinase response regulator, Hpt domain-containing
[Pelobacter carbinolicus DSM 2380]
Length = 1014
Score = 253 bits (645), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 193/627 (30%), Positives = 302/627 (48%), Gaps = 103/627 (16%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
Q+++ E+ + + AE A AKSQFL +SHEIRTPMNGV+GM ++L+D+ L Q
Sbjct: 337 QLQSSIQELQQARQHAEEASRAKSQFLVNMSHEIRTPMNGVIGMTELLLDSPLAEEQRQI 396
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
A T SG+ L+ +IND+LD +K+E+G+L+ E +PF + +++ LF++KA KG+EL
Sbjct: 397 ADTVAESGRALLQIINDILDFSKLEAGKLQLENIPFDICGIVEEAAGLFAAKAQTKGLEL 456
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
V +ADDV +
Sbjct: 457 V------------------------------------------VDMADDVPPLLLGDPGR 474
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
L + L V S+ + T G+ +V L + EQ I +V++ D+G+
Sbjct: 475 LRQVL--VNLLSNALKFTKQGYVLV----------TLRAHHITEQSATI--VVSIRDSGI 520
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GI + ++F PF QAD ST+R YGGTG+GLSI + L+ MGG+I S+PG GS F F
Sbjct: 521 GIEPQHIPQLFRPFSQADGSTTRKYGGTGLGLSICQDLIGHMGGQIHVFSQPGQGSNFWF 580
Query: 900 TVTFTEGERNSLDPK-WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVAN 958
+T T+ DP +V + E + ++AL++D + + L+ + A+
Sbjct: 581 EMTMTK------DPACGMHHVACIPELKNMQALIVDPHPLTRRSVQQQLREWGIKAKTAD 634
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
+ A + L +L L L D+ +E L+ H ++++ +PK
Sbjct: 635 HGKKALAMLQAQNFQIILVALTL----PDMPGRE--LIQHC----------CDVAQTVPK 678
Query: 1019 -IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP---S 1074
I L + + + V+ LTKP+R S L+ P +Q + P S
Sbjct: 679 HIITLGLTGQKLPPCRISDATTVSYLTKPIRPSKLLLHLTNAPPLEDNVQSQTPCPNPAS 738
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN-FDACFMD 1133
++L+V+DN VN++VA+G L+K G VT G+ A+ + H+ FD FMD
Sbjct: 739 ETSTPTKARVLLVEDNPVNQQVAKGMLEKLGCNVTLAADGQEALTAYS--HSPFDLLFMD 796
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
QMP MDG++AT IR E + ++ PI+AMTA + E+
Sbjct: 797 CQMPNMDGYEATRAIRADEKQHHKTTC-----------------PIIAMTAHTLPGDRER 839
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARFF 1220
C+K GMDDY+ KPF Q+ T + R+
Sbjct: 840 CLKAGMDDYLGKPFTMRQVRTLLNRWL 866
>gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
BAA-798]
gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
BAA-798]
Length = 1363
Score = 253 bits (645), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 200/627 (31%), Positives = 304/627 (48%), Gaps = 125/627 (19%)
Query: 612 KARAEAADVA--KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
+AR +A + + KS+F+A +SHEIRTP+N ++GM ++L DT L Q ++ QT S +
Sbjct: 832 RARDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDTPLSERQREFVQTIQTSSQS 891
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+S+IND+LD +KIE+G++ E V F L +++ + + A KGI L +V +P
Sbjct: 892 LLSIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAARGKGISLMTFVDPTIPR 951
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV--HLADDVRSKVDVKDKVLEKSLNSV 787
+IGDP R RQ++ NL+ N++KFT+ +G + + V H A D S+V++ +V + +
Sbjct: 952 TLIGDPARLRQVLLNLLSNAVKFTE-QGEVLLRVLPHRAAD--SEVELLFEVRDTGI--- 1005
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
G K ++ F D + T
Sbjct: 1006 ------------GIDSAHLGKLFQPFTQADASTT-------------------------- 1027
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG- 906
R YGGTG+GL+IS+ LVELMGG I S+PG GSTF FT F
Sbjct: 1028 --------------RRYGGTGLGLTISKTLVELMGGTIWAESQPGVGSTFRFTARFKVAA 1073
Query: 907 -ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQ----RLEMAVHVANSMQ 961
ER+ P Q +P L LV+DD++ ++ R +L+ R E A A +++
Sbjct: 1074 MERS---PTQQLVLPP-----DLHVLVVDDQAAHRQILRSYLESWHMRCEEAADGAQAIE 1125
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFL 1021
A D L L L+L D D +D L QQ R+ +S ++ + L
Sbjct: 1126 KAQREHFD------LAILDLLLPDTDGFD----------LAQQLRR----LSPSMKLVLL 1165
Query: 1022 LATSISETDRDELKSD-GIVTLLTKPLRLSVLIGCF-----QEDPESSKKLQQKRKKPSL 1075
T+ E + E D G L KP+R S L+ +++P+ + +
Sbjct: 1166 --TAHHEQGQGERAVDAGFSAYLLKPIRQSQLMDVLANISARKEPQPQAEQAPSSAAAAA 1223
Query: 1076 GHLLKG--KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT-PPHNFDACFM 1132
+G K IL+ +DN VNRR+A L+K G V VD GR AV+++ + M
Sbjct: 1224 EPPAQGERKPILLAEDNPVNRRLATLQLEKLGYSVRTVDNGREAVEEMARRGQEYCLVLM 1283
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D QMPEMDG++AT QIR LE + SG + PI+A+TA+ ++ E
Sbjct: 1284 DCQMPEMDGYEATRQIRRLETK------SGRRT------------PIIALTANALEGDRE 1325
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARF 1219
C+ GMDDY+SKP +L + R+
Sbjct: 1326 ACLAAGMDDYLSKPLTMGKLKAVLDRW 1352
>gi|238786791|ref|ZP_04630592.1| Signal transduction histidine-protein kinase barA [Yersinia
frederiksenii ATCC 33641]
gi|238725159|gb|EEQ16798.1| Signal transduction histidine-protein kinase barA [Yersinia
frederiksenii ATCC 33641]
Length = 911
Score = 253 bits (645), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 196/624 (31%), Positives = 303/624 (48%), Gaps = 109/624 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L Q
Sbjct: 259 LEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPTQT 318
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY QT S +L+ +INDVLD +K+E+ +L E +PF L LD V+ L + A++KG+
Sbjct: 319 DYLQTIQRSANNLLCIINDVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGL 378
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL ++V+ VPE VIGD R +QIITNL+GN+IKFT+ +G+I + V
Sbjct: 379 ELTLHVNKDVPEQVIGDAMRLQQIITNLLGNAIKFTE-QGNIDILV-------------- 423
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+VQ K+ + ++ ++V + DT
Sbjct: 424 --------AVQAKTTQ---------------------------------QVTIVVEIHDT 442
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S SR +GGTG+GL I+ LV+ MGGEI F S+ GSTF
Sbjct: 443 GIGISESQQSQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGEINFHSQVDRGSTF 502
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F +T L+ PD+S G I+ + A T L++
Sbjct: 503 RFHLTL------DLNEAVHYRQPDMSHLVGKTLAYIERNAAAARAT------LDI----- 545
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
L+ + L T S + L QL D + I + + Q + L+IS
Sbjct: 546 ----LSITPLQITHSLT-LAQLPKQHYDFLLVGVPIPFRNNMAVHQDKLIAALKISE--- 597
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIG--CFQEDPESSKKLQQKRKKPSL 1075
++ L S S+ + ++LK G L KP+ + LI ++ D S +Q RK P L
Sbjct: 598 QVILALPSQSQVEAEQLKQIGAKACLIKPMSSNRLIPLLSYESDNCISPITEQPRKLPKL 657
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
+++ VDDN N ++ L++ D G A+ + D MD+Q
Sbjct: 658 PF-----KVMAVDDNPANLKLIGTLLEELVEETMLCDSGAKAI-AYARENTLDIILMDIQ 711
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MPE+DG +A+ EI Q++ + + PI+A+TA ++ EQ +
Sbjct: 712 MPEIDGIRAS--------EIIHQMSHHQDT------------PIIAVTAHAVRGQQEQLL 751
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARF 1219
K GM DY++KP ++ +L A++R+
Sbjct: 752 KLGMADYLAKPIDEARLIQALSRY 775
>gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium
autotrophicum HRM2]
gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium
autotrophicum HRM2]
Length = 1272
Score = 253 bits (645), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 196/623 (31%), Positives = 305/623 (48%), Gaps = 100/623 (16%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E++ + +AEAA AKS FLA +SHEIRTPMN V+GM + + T+L Q DY
Sbjct: 494 EELIVARDKAEAATRAKSDFLANMSHEIRTPMNAVMGMTHLALQTDLTPKQRDYLHKIQI 553
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQK-GIELAIYVS 724
S L+ +IND+LD +KIE+G++ E + F+L +VL+N+ ++ + K +K GIE+
Sbjct: 554 SANSLLGVINDILDFSKIEAGKMGMESIDFNLDEVLENLSTMIAVKLREKEGIEVLFDTG 613
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSL 784
VP ++GDP R QI+ V+LA+
Sbjct: 614 ADVPRQLVGDPLRLSQIL--------------------VNLAN----------------- 636
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
NS++ T SG VV + K++ N + I L +V DTG+G+ E
Sbjct: 637 NSIKF-------TESGEIVV-------STKVVSQGNHV-----IVLQFSVRDTGIGLTEE 677
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
V++FT F QAD+S +R YGG+G+GLSI + LV++MGG+I S G GSTF FT
Sbjct: 678 HMVQLFTAFSQADTSITRRYGGSGLGLSICQRLVKMMGGKIWVESIYGKGSTFYFTAVL- 736
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
R + + Y+P E RGL+ALV+DD + E+ + L+ V +A S +
Sbjct: 737 ---RTVRESREACYIPP-PELRGLKALVVDDNATSREIFQSMLECFSFDVTLAASGEEGL 792
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
+ + +V++D W K G+ K+ ++ GL +P + L++
Sbjct: 793 EEIGKSVGGR---PYDIVVMD---W-KLPGIDGIEASKRIKKNTGL---TRIPLVILVSA 842
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKL-----QQKRKKPSLGH 1077
E ++ G+ L KP+ SV+ E K++ ++K++ L
Sbjct: 843 YAREEIMWRAEAAGLDGFLIKPINASVMFDTIMNALAKEGGKEMPPPAEEEKKQASDLLK 902
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
L+G ++L+V+DN +N+ VA L G V+ GR AVD + H FDA MDLQMP
Sbjct: 903 SLEGARVLLVEDNEINQEVAMEILAAGGVTVSLAANGREAVDAVGMNH-FDAVLMDLQMP 961
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG+ AT IR +V +PI+AMTA + ++
Sbjct: 962 VMDGYTATRTIRQ--------------------DVRFKDLPIIAMTAHAMADDPDKSRHA 1001
Query: 1198 GMDDYVSKPFEDEQLYTAVARFF 1220
GM+ +++KP + E LY+ +A +
Sbjct: 1002 GMNAHITKPIDPEVLYSTLAEWI 1024
>gi|83643679|ref|YP_432114.1| PAS/PAC domain-containing protein [Hahella chejuensis KCTC 2396]
gi|83631722|gb|ABC27689.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396]
Length = 1437
Score = 252 bits (644), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 197/634 (31%), Positives = 302/634 (47%), Gaps = 110/634 (17%)
Query: 590 IFHAAINRIAQVENDYHEMM-ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM 648
I +NR + +Y + + E KA A+ A AKS+FLA +SHEIRTPMN +LGM+ +L
Sbjct: 755 ILVLGVNRDITEQREYEQRLREAKAMADNASKAKSEFLANMSHEIRTPMNAILGMVNLLK 814
Query: 649 DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLF 708
T L+ Q DY A +S + L+ ++ND+LD +KIE+G+L + P L +L +V +
Sbjct: 815 RTNLEERQQDYVHKAESSARALLGILNDILDFSKIEAGKLTLDVEPCSLDKLLQDVGVII 874
Query: 709 SSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD 768
++ K +E+ + ++P+ + D R +QI+ NL GN++KFT+ +G + ++V
Sbjct: 875 TANLGDKPLEVLFDIDPKIPDWLELDGLRLQQILINLAGNAVKFTE-QGEVEITV----- 928
Query: 769 VRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRI 828
R KS E+ R+
Sbjct: 929 -------------------------------------RLKS-------------EEEDRL 938
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
L +V DTG+GI E RIF F QA++ST+R +GG G+GL+I R LV LMGGEI
Sbjct: 939 VLSFSVRDTGIGISAEQLQRIFEGFTQAEASTARRFGGAGLGLAICRRLVRLMGGEIAAE 998
Query: 889 SEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQ 948
SE G GS F F++ + W S + LR LV+DD + EV + ++
Sbjct: 999 SEEGEGSVFRFSIACVRAQ------AWSAAKKACSLPKTLRVLVVDDNASAREVLKGIIE 1052
Query: 949 RLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE--IGLVLHYMLKQQRR 1006
+A + + + + + S P LVLID W G ++K Q
Sbjct: 1053 SFGWVADIAVNGEEGVARVLEAAEASS-PH-NLVLID---WGMPGLNGWRAAELIKAQYP 1107
Query: 1007 KGGLEISRNLPKIFLL-ATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSK 1064
+G P I ++ A + E +R L S I+ LTKP+ S+++ +S+
Sbjct: 1108 EG------RAPLIMMVSAQTRDEMERRRLASPSIIDAYLTKPVTASMVLEA------ASE 1155
Query: 1065 KLQQ-----KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD 1119
L Q ++G L G IL+V+DN N++VA L+ GA V G AV
Sbjct: 1156 TLAQDCSRGNTDNAAIGARLHGMSILLVEDNPTNQQVAMELLQSEGAGVQIAADGLEAVA 1215
Query: 1120 KLTPPH-NFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
+ FDA MD+QMP MDG+ AT +IR G + + +P
Sbjct: 1216 AIQSAEVMFDAVLMDIQMPGMDGYAATREIR--------------------GKLKMNALP 1255
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
I+AMTA+ + + E + GM+D+V KPF+ + L
Sbjct: 1256 IIAMTANAMFSDREAALAVGMNDHVGKPFDFDHL 1289
>gi|304320035|ref|YP_003853678.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
gi|303298938|gb|ADM08537.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
Length = 796
Score = 252 bits (644), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 189/636 (29%), Positives = 296/636 (46%), Gaps = 109/636 (17%)
Query: 601 VENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
VE ++ E +AEAA +AKS FLA +SHEIRTPMNGVLGM ++LM TELD Q +
Sbjct: 245 VEERTADLEEAVTKAEAASLAKSAFLANMSHEIRTPMNGVLGMAELLMSTELDTYQRELI 304
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
T +SG L+++IND+LD +KIE+G+ PF+L + ++NV +L + +A +K +EL
Sbjct: 305 GTIMSSGTSLVTIINDILDFSKIEAGKFSLNEEPFNLREGIENVATLMAGRAAEKDLELF 364
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
+ +PE V D GR RQ+ITNLVGN+IKFT D+G + + V A + VD++ V
Sbjct: 365 VRYDPSLPEGVFTDGGRLRQVITNLVGNAIKFT-DEGQVLIDVTGAQSGET-VDLRISVT 422
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
+ + K + ++ E F+ DNT
Sbjct: 423 DTGIGIPPEKLEAIF---------------EKFEQADNT--------------------- 446
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
+SR Y GTG+GL+I + ++ELMGG+IG SE G G+TF
Sbjct: 447 -------------------SSRMYEGTGLGLAICKTIIELMGGKIGVTSELGRGATFFID 487
Query: 901 VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
+ + +R SL P D +E G R ++DD + + L + +S
Sbjct: 488 INYKIDDRASLRPTI-----DTAELAGARIAIVDDNATNLRILSEQLAAWNTEIFAFSSG 542
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDK---EIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ +L LP +++ D + + E+GL G+ P
Sbjct: 543 KEIFQWLDSRGEGEALPD--VIITDYQMPEMNGIELGL-------------GIRARTGFP 587
Query: 1018 KI-FLLATSISETDRDELKSDGIVTLLTKPLR-LSVLIGCFQEDPESSK-----KLQQKR 1070
I ++ +S+ + KS + L KP+R L + F+ ++ + L + +
Sbjct: 588 PIPIIMLSSVCAPKEEGSKSLPLSAWLVKPIRSLQLAEYVFEAKMKTGRFGDVEALAEAK 647
Query: 1071 KKPSLGHLLKG----KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN 1126
S+ + ILVVDDN+VN+ V LK + G A++K + ++
Sbjct: 648 ADRSISASSDPDAICETILVVDDNLVNQLVITNMLKGWATEILTASNGEDAIEKFS-AYS 706
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
D FMD+ MP MDG +AT +IR +E + N L PI+ TA
Sbjct: 707 PDIIFMDVSMPVMDGLEATRRIRGMEADQN-----------------LPTTPIVGATAHA 749
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+ ++C+K GM D ++KP E + V ++ S
Sbjct: 750 MDEDRQRCLKAGMVDVLTKPVRKESVDGMVLKWAAS 785
>gi|226947053|ref|YP_002802126.1| Periplasmic hybrid histidine protein kinase, two-component
[Azotobacter vinelandii DJ]
gi|226721980|gb|ACO81151.1| Periplasmic hybrid histidine protein kinase, two-component
[Azotobacter vinelandii DJ]
Length = 1030
Score = 252 bits (644), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 197/624 (31%), Positives = 291/624 (46%), Gaps = 131/624 (20%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS FLA +SHEIRTPMN ++GM Q+ +D+ LD Q ++ + AH++ + L+ +IND+LD +
Sbjct: 290 KSDFLANMSHEIRTPMNVIMGMTQLALDSGLDERQRNFVEKAHDAARSLLGIINDILDFS 349
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G++ E V F L V D++ L KA +KG+EL ++ VP +IGDP R Q+
Sbjct: 350 KIEAGKMRFEQVDFQLESVTDHLADLSVLKAQEKGLELLFDIATDVPTALIGDPLRLGQV 409
Query: 742 ITNLVGNSIKFTQDKGHIFVSVH--LADD--VRSKVDVKDKVLEKSLNSVQHKSDKVYNT 797
++NL+ N+IKFT +G I + + D+ VR + +V+D + LN Q
Sbjct: 410 LSNLLDNAIKFTS-RGEITLRIRKECEDERGVRLRFEVRDTGI--GLNETQ--------- 457
Query: 798 LSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
R K + F D
Sbjct: 458 --------RRKLFRAFTQAD---------------------------------------- 469
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQ 917
SSTSR YGGTG+GL+I + LV +M GEIG S PG GSTF F F ER + ++
Sbjct: 470 SSTSRQYGGTGLGLAICKHLVAMMDGEIGVDSSPGVGSTFHFDARF---ERQA---NQRE 523
Query: 918 YVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLP 977
+ D ++ G+R LV+DD + E+ L L AV A++ P
Sbjct: 524 LLADSADLLGMRVLVVDDNASALEIFAGMLSALRFAVTTADNA----------------P 567
Query: 978 QLALVLIDKDVWDKEIGLV-LHYMLKQQRRKGGLEISRNLPKI-----FLLATSISETDR 1031
Q +L D LV + +++ + R P+I F++ TS R
Sbjct: 568 QAIRLLERAQQEDNPYRLVIMDWLMPGMDGVQAVGAIRAAPRIAETPLFVMVTSYG---R 624
Query: 1032 DELKSD----GIVTLLTKPLRLSVLI-----GC---FQEDPESSKKLQQKRKKPSLGHLL 1079
DEL + LL KP+ S L+ C + P S K L+ + ++ L
Sbjct: 625 DELLERLGKVPVEGLLVKPVTPSSLLDGILDACSRRMRTAPNSRKALESEAEQAR--EAL 682
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
+G +L+V+DN VN+ +A L G V + G AV K+ H +D MD QMP M
Sbjct: 683 RGVHLLLVEDNPVNQEMAMELLATAGIRVDVANDGAEAVGKVM-AHAYDGVLMDCQMPVM 741
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DGF+AT +IR GL +PILAMTA + E+C+ GM
Sbjct: 742 DGFEATRRIRR---------------------AGLVDLPILAMTASTMAGDRERCLAAGM 780
Query: 1200 DDYVSKPFEDEQLYTAVARFFMSG 1223
Y++KP + QL+ + + SG
Sbjct: 781 HAYIAKPIDVAQLFVTLRHWVGSG 804
>gi|421320958|ref|ZP_15771515.1| sensory box protein [Vibrio cholerae CP1038(11)]
gi|421335208|ref|ZP_15785675.1| sensory box protein [Vibrio cholerae CP1048(21)]
gi|395923940|gb|EJH34751.1| sensory box protein [Vibrio cholerae CP1038(11)]
gi|395937069|gb|EJH47792.1| sensory box protein [Vibrio cholerae CP1048(21)]
Length = 1317
Score = 252 bits (644), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 196/622 (31%), Positives = 291/622 (46%), Gaps = 115/622 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 578 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 637
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 638 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 697
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 698 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 756
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 757 AQDKLDDLFDA---------------FSQADNSIT------------------------- 776
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 777 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 818
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 819 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 862
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 863 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 919
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + D S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 920 YGREINLDGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 975
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 976 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1034
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQCMKCG 1198
DG AT IR N + WH +PI+AMTA+ + E+C++ G
Sbjct: 1035 DGITATEHIR-----ANPR----------------WHSLPIVAMTANAMAIDIERCLQAG 1073
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
M+D++SKP E ++ Y + F
Sbjct: 1074 MNDHLSKPIEVDKFYQVLRHFL 1095
>gi|156975786|ref|YP_001446693.1| hybrid sensory histidine kinase BarA [Vibrio harveyi ATCC BAA-1116]
gi|156527380|gb|ABU72466.1| hypothetical protein VIBHAR_03530 [Vibrio harveyi ATCC BAA-1116]
Length = 932
Score = 252 bits (644), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 186/601 (30%), Positives = 293/601 (48%), Gaps = 104/601 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L +Q DY QT S +L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +K+E+G+L E +PF + L+ V++L ++ A++KG+E+ + V ++P+ +
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGL 400
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +QI+TNLVGNSIKFT+ +G+I +SV ++RS+
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTE-RGNIDISV----EIRSQ------------------- 436
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
SG ++L V DTG+GI Q ++F
Sbjct: 437 -------SG-------------------------DSVELQFMVRDTGIGISERQQAQLFQ 464
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF FTV E
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRLHSTEMPMS 524
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
D + +V G + L+++ A VT+ L + + V +S+ +D
Sbjct: 525 D------LIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRSSLP-----ENDEN 573
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
VL LA ++ D+ + ++Q +R P + + S
Sbjct: 574 YDYVLLNLA---ANQTYDDQSVA----AWIEQAKRMA--------PSVIMGTPSTELALA 618
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNM 1091
D++ +D + LTKPL L+ D + + +P + L +L VDDN
Sbjct: 619 DQVMNDHQIQCLTKPLSRRKLLQSLITDHVETPQAVIAPIEPVVNERLP-LTVLAVDDNP 677
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
N ++ L++ VT G+ AV+ L +D FMD+QMP MDG A I+ L
Sbjct: 678 ANLKLISALLRERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQHIKEL 736
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
E+N+ P++A+TA + ++ + GMDDY++KP E+
Sbjct: 737 --ELNKD------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHV 776
Query: 1212 L 1212
L
Sbjct: 777 L 777
>gi|424047708|ref|ZP_17785266.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HENC-03]
gi|408883672|gb|EKM22451.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HENC-03]
Length = 932
Score = 252 bits (643), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 184/601 (30%), Positives = 289/601 (48%), Gaps = 104/601 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L +Q DY QT S +L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +K+E+G+L E +PF + L+ V++L ++ A++KG+E+ + V ++P+ +
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGL 400
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +QI+TNLVGNSIKFT+ R +D+ ++ +S +SV+
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTE---------------RGNIDISVEMRSQSGDSVE--- 442
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
L V DTG+GI Q ++F
Sbjct: 443 --------------------------------------LQFMVRDTGIGISERQQAQLFQ 464
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF FTV E
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRLHSTEMPMS 524
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
D + +V G + L+++ A VT+ L + + V +S+ +D
Sbjct: 525 D------LIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRSSLP-----ENDEN 573
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
VL LA +D++ + ++Q +R P + + S
Sbjct: 574 YDYVLLNLAA----NQTYDEQ---SVAAWIEQAKRMA--------PSVIMGTPSTELALA 618
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNM 1091
D++ +D + LTKPL L+ D + + +P + L +L VDDN
Sbjct: 619 DQVMNDHQIQCLTKPLSRRKLLQSLITDHVETPQAVIAPIEPVVNERLP-LTVLAVDDNP 677
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
N ++ LK+ VT G+ AV+ L +D FMD+QMP MDG A I+ L
Sbjct: 678 ANLKLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQHIKEL 736
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
E+N+ P++A+TA + ++ + GMDDY++KP E+
Sbjct: 737 --ELNKD------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHV 776
Query: 1212 L 1212
L
Sbjct: 777 L 777
>gi|424613163|ref|ZP_18051966.1| sensory box protein [Vibrio cholerae HC-41A1]
gi|408014539|gb|EKG52173.1| sensory box protein [Vibrio cholerae HC-41A1]
Length = 1325
Score = 252 bits (643), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 196/622 (31%), Positives = 291/622 (46%), Gaps = 115/622 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 586 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 645
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 646 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 705
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 706 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 764
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 765 AQDKLDDLFDA---------------FSQADNSIT------------------------- 784
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 785 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 826
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 827 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 870
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 871 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 927
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + D S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 928 YGREINLDGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 983
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 984 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1042
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQCMKCG 1198
DG AT IR N + WH +PI+AMTA+ + E+C++ G
Sbjct: 1043 DGITATEHIR-----ANPR----------------WHSLPIVAMTANAMAIDIERCLQAG 1081
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
M+D++SKP E ++ Y + F
Sbjct: 1082 MNDHLSKPIEVDKFYQVLRHFL 1103
>gi|395006344|ref|ZP_10390171.1| PAS domain S-box [Acidovorax sp. CF316]
gi|394315692|gb|EJE52476.1| PAS domain S-box [Acidovorax sp. CF316]
Length = 1730
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 191/616 (31%), Positives = 289/616 (46%), Gaps = 95/616 (15%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A AKS+FLA +SHEIRTPMN ++GM + + T LD Q +Y + + + + L+
Sbjct: 970 KEMAEDATRAKSEFLANMSHEIRTPMNAIIGMSHLALQTALDNKQRNYIEKVNRAAESLL 1029
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+IND+LD +KIE+G++ E V F L DVLD+V +L KA KG+EL +D VP
Sbjct: 1030 GIINDILDFSKIEAGKMSMEQVDFRLEDVLDHVANLIGMKAEDKGLELLFSTADDVP--- 1086
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
T LVG+ ++ Q + +L + + + VL L Q
Sbjct: 1087 -----------TALVGDPLRLGQ------ILANLGSNAVKFAEQGEIVLGIELIGQQG-- 1127
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
E G ++L V+D+G+G+ E R+F
Sbjct: 1128 -------------------------------EPGGEVELHFWVKDSGIGMTPEQCARLFQ 1156
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QADSST+R YGGTG+GL+IS+ LVE+M G I S G GSTF F V F G +
Sbjct: 1157 SFSQADSSTTRRYGGTGLGLAISKTLVEMMQGRIWVESTVGQGSTFHFLVHF--GLQAQP 1214
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
P+ + D +E GL LV+DD + E+ +R + V A + +
Sbjct: 1215 MPR---RMFDANELLGLSVLVVDDNATAREILSTMARRFGLEVDTARDGEEGLRMVEGAD 1271
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
S S+ LVL+D W + + Q KGG P + ++ E
Sbjct: 1272 SRSL--AYDLVLMD---WKMPRMDGAETVRRMQALKGGAA-----PAVIMVTAFGREEAM 1321
Query: 1032 DELKSDG--IVTLLTKPLRLSVLIGCFQEDPESSKKLQQK---RKKPSLGHL--LKGKQI 1084
+ + S G + +LTKP+ S L+ E + + + R + HL LKG ++
Sbjct: 1322 NAVHSRGARVNAVLTKPVTASTLLEAVGEALGRGRVVSDRVASRAQGQTEHLQQLKGARV 1381
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+V+DN +N+ +A L++ G V + G+ A+D L FD MD QMP MDG+ A
Sbjct: 1382 LLVEDNALNQELAMELLRQAGIEVVLANNGQEALDLLAADPRFDGVLMDCQMPVMDGYTA 1441
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T +R L +PI+AMTA+ + E+ ++ GM D++
Sbjct: 1442 TRHLRSLPQ--------------------FADLPIIAMTANAMAGDREKVIEAGMVDHIP 1481
Query: 1205 KPFEDEQLYTAVARFF 1220
KP E+++ +AR+
Sbjct: 1482 KPLRVEEMFACMARWI 1497
>gi|443535096|ref|ZP_21100989.1| sensory box protein [Vibrio cholerae HC-80A1]
gi|443461711|gb|ELT32769.1| sensory box protein [Vibrio cholerae HC-80A1]
Length = 1314
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 196/622 (31%), Positives = 291/622 (46%), Gaps = 115/622 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 575 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 634
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 635 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 694
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 695 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 753
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 754 AQDKLDDLFDA---------------FSQADNSIT------------------------- 773
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 774 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 815
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 816 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 859
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 860 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 916
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + D S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 917 YGREINLDGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 972
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 973 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1031
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQCMKCG 1198
DG AT IR N + WH +PI+AMTA+ + E+C++ G
Sbjct: 1032 DGITATEHIR-----ANPR----------------WHSLPIVAMTANAMAIDIERCLQAG 1070
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
M+D++SKP E ++ Y + F
Sbjct: 1071 MNDHLSKPIEVDKFYQVLRHFL 1092
>gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 1493
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 205/685 (29%), Positives = 311/685 (45%), Gaps = 122/685 (17%)
Query: 581 VVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGV 640
V IT+ + + +E + E K AE A AKS+FLAT+SHEIRTPMN V
Sbjct: 691 VGITIAQAKLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAV 750
Query: 641 LGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700
+GM +L+D EL Q D+ +T SG L+++IND+LD +KIESG+LE E PF L +
Sbjct: 751 IGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNC 810
Query: 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIF 760
L+ L L S +A++KG+ELA + P+ ++GD R RQ++ NLV N+IKFT + G +
Sbjct: 811 LEECLELLSGRADEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSE-GEVI 869
Query: 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTN 820
++V A +K DVK KSD T S +
Sbjct: 870 LAVK-ATHPDAKKDVK-------------KSDDSDFTESHY------------------- 896
Query: 821 TMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVEL 880
L V DTG+GIP + R+F F Q D+ST+R YGGTG+GL+IS+ L +L
Sbjct: 897 --------VLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQL 948
Query: 881 MGGEIGFVS----------------------------EPGT---GSTFSFTVTFTEGERN 909
M G++ S P GS F FT+ +
Sbjct: 949 MNGKMWVASWVNLLDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIVCSGFN-- 1006
Query: 910 SLDPKWQQYVPDVSEF-----RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
PD+ EF G + L+++ I ++ ++ M + A
Sbjct: 1007 ---------TPDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKTGADAL 1057
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
L D P L L+++ ++ D + L ++Q ++ R P ++
Sbjct: 1058 KVLHDN------PGLDLIILGINLPDMDEA-TLASRIRQLEKQMIAGKYRQKPFNLVMFN 1110
Query: 1025 SISETD---RDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKK----P 1073
S T+ R E + + L+ KPL+ S L+ F + K K + P
Sbjct: 1111 YASNTEVLRRLEAQGVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGYDP 1170
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
++ +IL+ +DN+ N++VA L++ G G +D L +D MD
Sbjct: 1171 AIPQPHANLRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALN-RQQYDVILMD 1229
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMPEMDG +A+ I A+ ++M G I+AMTA+ +Q E
Sbjct: 1230 VQMPEMDGLEASKHI----------CAAYSDGSDM----GPRKPRIIAMTANAMQGDREM 1275
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVAR 1218
C+ GMDDY++KP E L A+A+
Sbjct: 1276 CLNAGMDDYITKPVRREALAEALAK 1300
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 1073 PSLGHL----LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
P LG L GK++L+V+ + +N+++ +K G + V G A+ L D
Sbjct: 1008 PDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKTGADALKVLHDNPGLD 1067
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
+ + +P+MD +IR LE +Q+ +G+ + F V + A +V++
Sbjct: 1068 LIILGINLPDMDEATLASRIRQLE----KQMIAGKYRQKPFNLVMFNY----ASNTEVLR 1119
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
Q + V+KP + Q Y + + F
Sbjct: 1120 RLEAQGVNVA--GLVNKPLKQSQFYNTLMQIF 1149
>gi|345870773|ref|ZP_08822723.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343921242|gb|EGV31963.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1050
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 190/613 (30%), Positives = 301/613 (49%), Gaps = 88/613 (14%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E K RAEAA AKS+FL+++SHE+RTPMN ++G+ ++L DTEL Q+ + + ++G
Sbjct: 391 LIEAKHRAEAATEAKSRFLSSMSHELRTPMNAIIGVGEVLADTELGRDQVHFIRILQSAG 450
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
DL+++IND+LD +KIESG L E + F L +++ + + + +A KG++LA+ + +
Sbjct: 451 DDLLNVINDILDISKIESGELTLESIDFDLSQLVEEICDMLAIRARTKGLDLALRLGRYL 510
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P+ ++GDP R RQI+ NL+GN++KFT+ +G++ V V L E S+ S
Sbjct: 511 PKRIVGDPHRLRQILINLIGNAVKFTE-QGYVSVEVSLE--------------ETSVPSA 555
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
K ++ L+ ++ DTG+GIP + Q
Sbjct: 556 AEKPPG--------------------------------SQVALVFSIRDTGIGIPEDKQE 583
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
+IF F Q DSST+R YGGTG+GL ISR L LMGG I S PG GS F+ +T G+
Sbjct: 584 QIFESFTQVDSSTTRQYGGTGLGLGISRRLATLMGGTIEVHSTPGLGSLFAVHLTVQTGK 643
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
++ + +PD E R L++DD + + L M A S + A + L
Sbjct: 644 DETVSAPPAE-IPDPPE---KRILIVDDIEVNRLILGEMLLEWGMDFAEAESAEQALTLL 699
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
+ + P L+L D W + GL L ++ Q L+ I +LA+
Sbjct: 700 -NAARNAGRPFDILLL---DYWMPGMDGLDLANVITQDLDFADLD-------IVMLASDT 748
Query: 1027 SETDRDELKSDGIVTLLTKPLR----LSVLIGCFQ--EDPESSKKLQQKRKKPSLGHLLK 1080
D+ + + L KP++ +L+G Q P +S +Q G L
Sbjct: 749 LIMDKARTQRIRLAGHLVKPVKKRDLKRLLVGFTQIATGPGTSSG-EQGATTEDDGRSLP 807
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+ILVV+D+ NR + + L + V + G A++K + + MD+QMP MD
Sbjct: 808 AARILVVEDSPHNRTLIQAFLARTPLRVDYAENGAEAIEKWN-ANAYTLVLMDMQMPVMD 866
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G++AT IR E E E G PI+A+TA + A + C+ G D
Sbjct: 867 GYEATTAIR--EQERTE---------------GRAPTPIVALTAFALTADVDTCLAAGCD 909
Query: 1201 DYVSKPFEDEQLY 1213
+++KP +
Sbjct: 910 AHLAKPIRKRDFF 922
>gi|152996044|ref|YP_001340879.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
gi|150836968|gb|ABR70944.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
Length = 1258
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 197/628 (31%), Positives = 301/628 (47%), Gaps = 116/628 (18%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+A AA AKS FLAT+SHEIRTP+NGVLGM ++L T+L+ Q SG+ L+ L
Sbjct: 594 QAVAASKAKSDFLATMSHEIRTPLNGVLGMAELLSGTKLNPEQTTQLNVLKESGEGLLGL 653
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IND+LD +KIE+G + E V F+L + +V+ L +A++KGI+L + + P ++G
Sbjct: 654 INDLLDFSKIEAGHISIERVDFNLEKAIYDVIRLLMMRADEKGIDLLVEYDEVCPRFLVG 713
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
D R +QI+TNL+ N+IKFT GH+ V VK
Sbjct: 714 DVFRIKQILTNLISNAIKFTS-IGHVL------------VSVK----------------- 743
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
+VD+ G + + ++V DTGVGI + Q +FT F
Sbjct: 744 --------GIVDKH------------------GMVSITISVADTGVGIADKVQPHLFTAF 777
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
+QADSST+R +GGTG+GL+I++ L+ LM G I S+ GST FTVTF E +++
Sbjct: 778 VQADSSTTRKFGGTGLGLAITKQLIGLMNGNISLSSKLNVGST--FTVTFALPESHAM-- 833
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
+ + + D + G + LVIDD + + L+ ++ S A S + + +
Sbjct: 834 SYIETIVDENLLLGKKTLVIDDNETNLTILKNQLRSCDIYADAEISPVDALSRIEQSIND 893
Query: 974 SVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPK-IFLLATSISETDR 1031
P +VL D E+ GL+L +++ E+S +L + I L+ +S+ +
Sbjct: 894 DS-PYQIIVL---DYLMPELDGLMLSKLIR--------EVSGSLYQPIILMTSSVGRLSQ 941
Query: 1032 DELKSDGIVTLLTKPLRL------------SVLIG----CFQEDPESSKKLQQKRKKPSL 1075
DEL + G+ + KP+ S L+G C + E K +K L
Sbjct: 942 DELSTAGVNMSIVKPMSALTLKKGLVSALSSNLLGHQLPCTEVSDEDELKDNLNGEKKGL 1001
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
+LVV+D N VA+G L + G V + G+ V+ + H D FMDL
Sbjct: 1002 --------VLVVEDMKANLAVAQGILTRMGFDVIAAENGKVGVE-MWGTHQPDLIFMDLH 1052
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP MDG A IR E N G VPI+A+TAD++ + +
Sbjct: 1053 MPVMDGMSAMRAIRQAEK-----------------NSGNRRVPIIALTADIMPETLAEVF 1095
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
+ G D V KPF+ ++ + + + SG
Sbjct: 1096 RAGGDGLVPKPFKQKEFISMLDEWLPSG 1123
>gi|269960400|ref|ZP_06174773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834827|gb|EEZ88913.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 932
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 184/601 (30%), Positives = 289/601 (48%), Gaps = 104/601 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L +Q DY QT S +L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +K+E+G+L E +PF + L+ V++L ++ A++KG+E+ + V ++P+ +
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGL 400
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +QI+TNLVGNSIKFT+ R +D+ ++ +S +SV+
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTE---------------RGNIDISVEMRSQSGDSVE--- 442
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
L V DTG+GI Q ++F
Sbjct: 443 --------------------------------------LQFMVRDTGIGISERQQAQLFQ 464
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF FTV E
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRLHSTEMPMS 524
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
D + +V G + L+++ A VT+ L + + V +S+ +D
Sbjct: 525 D------LIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRSSLP-----ENDEN 573
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
VL LA +D++ + ++Q +R P + + S
Sbjct: 574 YDYVLLNLAA----NQTYDEQ---SVAAWIEQAKRMA--------PSVIMGTPSTELALA 618
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNM 1091
D++ +D + LTKPL L+ D + + +P + L +L VDDN
Sbjct: 619 DQVMNDHQIQCLTKPLSRRKLLQSLITDHVETPQAVIAPIEPVVNERLP-LTVLAVDDNP 677
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
N ++ LK+ VT G+ AV+ L +D FMD+QMP MDG A I+ L
Sbjct: 678 ANLKLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQHIKEL 736
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
E+N+ P++A+TA + ++ + GMDDY++KP E+
Sbjct: 737 --ELNKD------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHV 776
Query: 1212 L 1212
L
Sbjct: 777 L 777
>gi|186682678|ref|YP_001865874.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186465130|gb|ACC80931.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1403
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 217/719 (30%), Positives = 333/719 (46%), Gaps = 127/719 (17%)
Query: 551 GDPSRKHEMH--CRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEM 608
G+P+ +H F+Q P + A + I L + +R ++ +
Sbjct: 604 GEPNGAIGLHQCSYFRQWTPDEIELLEAVAAQLGIALAQAQLLEQETHRREELTLKNFAL 663
Query: 609 MELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGK 668
+ K +AEAA+ AKS+FLA +SHEIRTPMN V+GM +L+DT+L Q D+ +T +SG
Sbjct: 664 EQAKRQAEAANRAKSEFLAMMSHEIRTPMNAVIGMTDLLLDTDLTPQQQDFVETVRSSGD 723
Query: 669 DLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVP 728
L+++IND+LD +KIESG+LE E PF L ++ +SL + KA QK IEL + +VP
Sbjct: 724 ALLTIINDILDFSKIESGKLELEEQPFDLRACVEQAISLLAPKAAQKNIELVYLIQPQVP 783
Query: 729 EVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788
++GD R RQ++ NL+ N+IKFT ++G + +SV L D V + +S
Sbjct: 784 TQIVGDMTRLRQVLMNLLNNAIKFT-ERGEVVLSVELG--------AGDSVKQGENSSPL 834
Query: 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR-----------IKLLVTVEDT 837
H P + R + + + T T+ R I++ ++DT
Sbjct: 835 H------------PSLVRLRP--SLREAAPTTTLRTSSRQARPSASSESPIQIQFAIKDT 880
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI-----GFV---- 888
G+GI E R+F PF QAD S +R YGGTG+GL IS+ L ++MGG + G V
Sbjct: 881 GIGITPEKIERLFHPFTQADVSMTRRYGGTGLGLVISKRLSKMMGGTLWVESQGIVGGNP 940
Query: 889 ----------SEP--GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE---------FRG 927
S P GSTF FT+T VP V E +G
Sbjct: 941 SPRWKSRKSLSSPYSSQGSTFYFTIT--------------AQVPAVPEAEFSNSPMQLQG 986
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
R L++DD ++ + EM + A S + A + L+ Q + ++D +
Sbjct: 987 KRLLIVDDNLTNCQIISLQAESWEMETYAAKSAKEALAQLAQGI------QFDIAILDME 1040
Query: 988 VWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPL 1047
+ + G+ L +Q RR+ G + NLP + L + ET D L+KP+
Sbjct: 1041 MPAMD-GITLA---RQIRRQSGCQ---NLPLVILTSLGREETFSD-FGDVEFAASLSKPI 1092
Query: 1048 RLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKK 1103
+ S V+ P + L H L + IL+ +D +VN++VA L+K
Sbjct: 1093 KQSQLYDVITRVLGNQPSEASITDFPLVDRHLTHPLPLR-ILLAEDTIVNQKVALLMLQK 1151
Query: 1104 HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163
G V G V K +D MD+ MPEMDG + R + E
Sbjct: 1152 IGYSADVVTNG-VEVLKALQKQPYDLVLMDVHMPEMDGLETA---RRICQE--------- 1198
Query: 1164 SSAEMFGNVGLWHVP----ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
W V I+A+TA+ ++ E C+ GMDDY+SKP + ++L A+++
Sbjct: 1199 -----------WKVGFRPHIIAITANAMRGDREVCLAAGMDDYISKPIQLQKLAQALSK 1246
>gi|388602703|ref|ZP_10161099.1| hybrid sensory histidine kinase BarA [Vibrio campbellii DS40M4]
Length = 932
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 184/601 (30%), Positives = 290/601 (48%), Gaps = 104/601 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L +Q DY QT S +L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +K+E+G+L E +PF + L+ V++L ++ A++KG+E+ + V ++P+ +
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEINLKVDPKIPQGL 400
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +QI+TNLVGNSIKFT+ R +D+ ++ +S +SV+
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTE---------------RGNIDISVEMRSQSGDSVE--- 442
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
L V DTG+GI Q ++F
Sbjct: 443 --------------------------------------LQFMVRDTGIGISERQQAQLFQ 464
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF FTV E
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRLHSTEMPMS 524
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
D + +V G + L+++ A VT+ L + + V +S+ +D
Sbjct: 525 D------LIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRSSLP-----ENDEN 573
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
VL LA ++ D+ + ++Q +R P + + S
Sbjct: 574 YDYVLLNLA---ANQTYDDQSVA----AWIEQAKRMA--------PSVIMGTPSTELALA 618
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNM 1091
D++ +D + LTKPL L+ D + + +P + L +L VDDN
Sbjct: 619 DQVMNDHQIQCLTKPLSRRKLLQSLITDHVETPQAVIAPIEPVVNERLP-LTVLAVDDNP 677
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
N ++ L++ VT G+ AV+ L +D FMD+QMP MDG A QI+ L
Sbjct: 678 ANLKLISALLRERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQQIKEL 736
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
E+N+ P++A+TA + ++ + GMDDY++KP E+
Sbjct: 737 --ELNKD------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHV 776
Query: 1212 L 1212
L
Sbjct: 777 L 777
>gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O1 biovar El Tor str. N16961]
gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae B33]
gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MO10]
gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
gi|360035246|ref|YP_004937009.1| hypothetical protein Vch1786_I0851 [Vibrio cholerae O1 str.
2010EL-1786]
gi|379741153|ref|YP_005333122.1| hypothetical protein O3Y_06280 [Vibrio cholerae IEC224]
gi|417813368|ref|ZP_12460025.1| sensory box protein [Vibrio cholerae HC-49A2]
gi|417816232|ref|ZP_12462864.1| sensory box protein [Vibrio cholerae HCUF01]
gi|418332380|ref|ZP_12943314.1| sensory box protein [Vibrio cholerae HC-06A1]
gi|418337124|ref|ZP_12946022.1| sensory box protein [Vibrio cholerae HC-23A1]
gi|418343639|ref|ZP_12950423.1| sensory box protein [Vibrio cholerae HC-28A1]
gi|418348791|ref|ZP_12953525.1| sensory box protein [Vibrio cholerae HC-43A1]
gi|418354901|ref|ZP_12957622.1| sensory box protein [Vibrio cholerae HC-61A1]
gi|419825836|ref|ZP_14349340.1| sensory box protein [Vibrio cholerae CP1033(6)]
gi|421316322|ref|ZP_15766893.1| sensory box protein [Vibrio cholerae CP1032(5)]
gi|421324953|ref|ZP_15775479.1| sensory box protein [Vibrio cholerae CP1041(14)]
gi|421328612|ref|ZP_15779126.1| sensory box protein [Vibrio cholerae CP1042(15)]
gi|421331637|ref|ZP_15782117.1| sensory box protein [Vibrio cholerae CP1046(19)]
gi|421339102|ref|ZP_15789537.1| sensory box protein [Vibrio cholerae HC-20A2]
gi|421347236|ref|ZP_15797618.1| sensory box protein [Vibrio cholerae HC-46A1]
gi|422891457|ref|ZP_16933835.1| sensory box protein [Vibrio cholerae HC-40A1]
gi|422902668|ref|ZP_16937665.1| sensory box protein [Vibrio cholerae HC-48A1]
gi|422906547|ref|ZP_16941377.1| sensory box protein [Vibrio cholerae HC-70A1]
gi|422913130|ref|ZP_16947649.1| sensory box protein [Vibrio cholerae HFU-02]
gi|422925611|ref|ZP_16958636.1| sensory box protein [Vibrio cholerae HC-38A1]
gi|423144933|ref|ZP_17132542.1| sensory box protein [Vibrio cholerae HC-19A1]
gi|423149612|ref|ZP_17136940.1| sensory box protein [Vibrio cholerae HC-21A1]
gi|423153426|ref|ZP_17140620.1| sensory box protein [Vibrio cholerae HC-22A1]
gi|423156239|ref|ZP_17143343.1| sensory box protein [Vibrio cholerae HC-32A1]
gi|423160064|ref|ZP_17147032.1| sensory box protein [Vibrio cholerae HC-33A2]
gi|423164787|ref|ZP_17151542.1| sensory box protein [Vibrio cholerae HC-48B2]
gi|423730917|ref|ZP_17704231.1| sensory box protein [Vibrio cholerae HC-17A1]
gi|423754962|ref|ZP_17712238.1| sensory box protein [Vibrio cholerae HC-50A2]
gi|423892605|ref|ZP_17726288.1| sensory box protein [Vibrio cholerae HC-62A1]
gi|423927383|ref|ZP_17730905.1| sensory box protein [Vibrio cholerae HC-77A1]
gi|424001928|ref|ZP_17745014.1| sensory box protein [Vibrio cholerae HC-17A2]
gi|424006089|ref|ZP_17749069.1| sensory box protein [Vibrio cholerae HC-37A1]
gi|424024107|ref|ZP_17763767.1| sensory box protein [Vibrio cholerae HC-62B1]
gi|424026957|ref|ZP_17766570.1| sensory box protein [Vibrio cholerae HC-69A1]
gi|424586230|ref|ZP_18025819.1| sensory box protein [Vibrio cholerae CP1030(3)]
gi|424594931|ref|ZP_18034264.1| sensory box protein [Vibrio cholerae CP1040(13)]
gi|424598796|ref|ZP_18037989.1| sensory box protein [Vibrio Cholerae CP1044(17)]
gi|424601535|ref|ZP_18040687.1| sensory box protein [Vibrio cholerae CP1047(20)]
gi|424606527|ref|ZP_18045487.1| sensory box protein [Vibrio cholerae CP1050(23)]
gi|424610357|ref|ZP_18049211.1| sensory box protein [Vibrio cholerae HC-39A1]
gi|424616978|ref|ZP_18055665.1| sensory box protein [Vibrio cholerae HC-42A1]
gi|424621929|ref|ZP_18060452.1| sensory box protein [Vibrio cholerae HC-47A1]
gi|424644902|ref|ZP_18082650.1| sensory box protein [Vibrio cholerae HC-56A2]
gi|424652582|ref|ZP_18090058.1| sensory box protein [Vibrio cholerae HC-57A2]
gi|424656486|ref|ZP_18093784.1| sensory box protein [Vibrio cholerae HC-81A2]
gi|440709608|ref|ZP_20890265.1| hypothetical protein VC4260B_10100 [Vibrio cholerae 4260B]
gi|443503439|ref|ZP_21070418.1| sensory box protein [Vibrio cholerae HC-64A1]
gi|443507340|ref|ZP_21074124.1| sensory box protein [Vibrio cholerae HC-65A1]
gi|443511467|ref|ZP_21078122.1| sensory box protein [Vibrio cholerae HC-67A1]
gi|443515022|ref|ZP_21081549.1| sensory box protein [Vibrio cholerae HC-68A1]
gi|443518820|ref|ZP_21085230.1| sensory box protein [Vibrio cholerae HC-71A1]
gi|443523710|ref|ZP_21089937.1| sensory box protein [Vibrio cholerae HC-72A2]
gi|443531320|ref|ZP_21097335.1| sensory box protein [Vibrio cholerae HC-7A1]
gi|443538664|ref|ZP_21104519.1| sensory box protein [Vibrio cholerae HC-81A1]
gi|449056162|ref|ZP_21734830.1| Sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O1 str. Inaba G4222]
gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O1 biovar El Tor str. N16961]
gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae B33]
gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MO10]
gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
gi|340041958|gb|EGR02924.1| sensory box protein [Vibrio cholerae HCUF01]
gi|340042672|gb|EGR03637.1| sensory box protein [Vibrio cholerae HC-49A2]
gi|341623382|gb|EGS48917.1| sensory box protein [Vibrio cholerae HC-48A1]
gi|341623445|gb|EGS48978.1| sensory box protein [Vibrio cholerae HC-70A1]
gi|341624505|gb|EGS49997.1| sensory box protein [Vibrio cholerae HC-40A1]
gi|341639567|gb|EGS64184.1| sensory box protein [Vibrio cholerae HFU-02]
gi|341647193|gb|EGS71279.1| sensory box protein [Vibrio cholerae HC-38A1]
gi|356419191|gb|EHH72749.1| sensory box protein [Vibrio cholerae HC-06A1]
gi|356419628|gb|EHH73173.1| sensory box protein [Vibrio cholerae HC-21A1]
gi|356424676|gb|EHH78075.1| sensory box protein [Vibrio cholerae HC-19A1]
gi|356431642|gb|EHH84846.1| sensory box protein [Vibrio cholerae HC-22A1]
gi|356432702|gb|EHH85899.1| sensory box protein [Vibrio cholerae HC-23A1]
gi|356436053|gb|EHH89180.1| sensory box protein [Vibrio cholerae HC-28A1]
gi|356441913|gb|EHH94789.1| sensory box protein [Vibrio cholerae HC-32A1]
gi|356447530|gb|EHI00321.1| sensory box protein [Vibrio cholerae HC-43A1]
gi|356448520|gb|EHI01284.1| sensory box protein [Vibrio cholerae HC-33A2]
gi|356453303|gb|EHI05966.1| sensory box protein [Vibrio cholerae HC-61A1]
gi|356454312|gb|EHI06960.1| sensory box protein [Vibrio cholerae HC-48B2]
gi|356646400|gb|AET26455.1| conserved hypothetical protein [Vibrio cholerae O1 str. 2010EL-1786]
gi|378794663|gb|AFC58134.1| hypothetical protein O3Y_06280 [Vibrio cholerae IEC224]
gi|395920623|gb|EJH31445.1| sensory box protein [Vibrio cholerae CP1041(14)]
gi|395921279|gb|EJH32099.1| sensory box protein [Vibrio cholerae CP1032(5)]
gi|395930118|gb|EJH40867.1| sensory box protein [Vibrio cholerae CP1042(15)]
gi|395932901|gb|EJH43644.1| sensory box protein [Vibrio cholerae CP1046(19)]
gi|395944050|gb|EJH54724.1| sensory box protein [Vibrio cholerae HC-20A2]
gi|395946296|gb|EJH56960.1| sensory box protein [Vibrio cholerae HC-46A1]
gi|395960274|gb|EJH70649.1| sensory box protein [Vibrio cholerae HC-56A2]
gi|395961513|gb|EJH71836.1| sensory box protein [Vibrio cholerae HC-57A2]
gi|395964689|gb|EJH74888.1| sensory box protein [Vibrio cholerae HC-42A1]
gi|395972195|gb|EJH81802.1| sensory box protein [Vibrio cholerae HC-47A1]
gi|395975624|gb|EJH85108.1| sensory box protein [Vibrio cholerae CP1030(3)]
gi|395977311|gb|EJH86722.1| sensory box protein [Vibrio cholerae CP1047(20)]
gi|408008224|gb|EKG46228.1| sensory box protein [Vibrio cholerae HC-39A1]
gi|408034321|gb|EKG70825.1| sensory box protein [Vibrio cholerae CP1040(13)]
gi|408043399|gb|EKG79395.1| sensory box protein [Vibrio Cholerae CP1044(17)]
gi|408044730|gb|EKG80622.1| sensory box protein [Vibrio cholerae CP1050(23)]
gi|408055467|gb|EKG90395.1| sensory box protein [Vibrio cholerae HC-81A2]
gi|408609917|gb|EKK83293.1| sensory box protein [Vibrio cholerae CP1033(6)]
gi|408625305|gb|EKK98218.1| sensory box protein [Vibrio cholerae HC-17A1]
gi|408638279|gb|EKL10200.1| sensory box protein [Vibrio cholerae HC-50A2]
gi|408656242|gb|EKL27339.1| sensory box protein [Vibrio cholerae HC-77A1]
gi|408657517|gb|EKL28596.1| sensory box protein [Vibrio cholerae HC-62A1]
gi|408846838|gb|EKL86917.1| sensory box protein [Vibrio cholerae HC-37A1]
gi|408848255|gb|EKL88306.1| sensory box protein [Vibrio cholerae HC-17A2]
gi|408871573|gb|EKM10810.1| sensory box protein [Vibrio cholerae HC-62B1]
gi|408879848|gb|EKM18791.1| sensory box protein [Vibrio cholerae HC-69A1]
gi|439975197|gb|ELP51333.1| hypothetical protein VC4260B_10100 [Vibrio cholerae 4260B]
gi|443432171|gb|ELS74702.1| sensory box protein [Vibrio cholerae HC-64A1]
gi|443436373|gb|ELS82496.1| sensory box protein [Vibrio cholerae HC-65A1]
gi|443439642|gb|ELS89340.1| sensory box protein [Vibrio cholerae HC-67A1]
gi|443443664|gb|ELS96950.1| sensory box protein [Vibrio cholerae HC-68A1]
gi|443447869|gb|ELT04511.1| sensory box protein [Vibrio cholerae HC-71A1]
gi|443450261|gb|ELT10538.1| sensory box protein [Vibrio cholerae HC-72A2]
gi|443458403|gb|ELT25799.1| sensory box protein [Vibrio cholerae HC-7A1]
gi|443466253|gb|ELT40912.1| sensory box protein [Vibrio cholerae HC-81A1]
gi|448263985|gb|EMB01224.1| Sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O1 str. Inaba G4222]
Length = 1331
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 196/622 (31%), Positives = 291/622 (46%), Gaps = 115/622 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + D S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLDGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQCMKCG 1198
DG AT IR N + WH +PI+AMTA+ + E+C++ G
Sbjct: 1049 DGITATEHIR-----ANPR----------------WHSLPIVAMTANAMAIDIERCLQAG 1087
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
M+D++SKP E ++ Y + F
Sbjct: 1088 MNDHLSKPIEVDKFYQVLRHFL 1109
>gi|2073556|gb|AAB53936.1| sensor/regulator protein RpfA [Pectobacterium carotovorum subsp.
carotovorum]
Length = 929
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 185/630 (29%), Positives = 307/630 (48%), Gaps = 116/630 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NG++G + + T L+ Q
Sbjct: 268 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGLIGFTRQTLKTPLNTTQT 327
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY T S +L+++INDVLD +K+E+G+L E +PF LH+ LD+V+ L + A++KG+
Sbjct: 328 DYLLTIERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGL 387
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VPE +GDP R +QIITNL+GN+IKFT+ +G+I D+R
Sbjct: 388 ELTLSIQNDVPEQFVGDPLRIQQIITNLLGNAIKFTE-QGNI--------DIR------- 431
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
V+ + +++ L L V + DT
Sbjct: 432 ---------VEKRRQELHQVL-------------------------------LEVQIRDT 451
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F SE GSTF
Sbjct: 452 GIGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTF 511
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F +T L+P P + +G ++ I A+ T + +
Sbjct: 512 WFHITL------PLNPHAIPTEPAYTMLQGKHLAYVEYHPIAAQAT----------LDIL 555
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L SY + + LP+ ++ + + +L Y + + +I R P
Sbjct: 556 SQTPLIVSY---SPTFEQLPEGEFDILLLGIPVQYRNTLLDYTPRLR------DICRRSP 606
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED--------PESSKKLQQK 1069
+ L S+++ D ++LK+ G+ L+KPL S L+ Q+ P+ + Q
Sbjct: 607 CVILALPSLAQMDAEQLKTFGVHACLSKPLAASRLLPLLQDSTLFQFSFLPDDTASHQS- 665
Query: 1070 RKKPSLGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
++ HL + +++ VDDN N ++ L++ + + G+ A+ + + D
Sbjct: 666 ----AVRHLARLPLRVMAVDDNPANLKLIGTLLEEQVETIILCESGQDAIAQ-AELNQCD 720
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD+QMP MDG A+ IR + + PI+A+TA +
Sbjct: 721 IILMDIQMPGMDGICASELIRQIPHHAT--------------------TPIIAVTAQTMT 760
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
E ++ GMDDY++KP +++ L + + R
Sbjct: 761 GEREHLLRSGMDDYLAKPIDEQMLKSVLTR 790
>gi|406962787|gb|EKD89037.1| hypothetical protein ACD_34C00224G0005 [uncultured bacterium]
Length = 1405
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 205/622 (32%), Positives = 309/622 (49%), Gaps = 105/622 (16%)
Query: 611 LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDL 670
L +A+ A++AKS+FLA +SHEIRTPMNGV+GM +L+DT+LD Q+ YA+ +SG+ L
Sbjct: 737 LAQQADMANIAKSEFLANMSHEIRTPMNGVIGMTGLLLDTKLDQEQMRYAEIVRSSGEAL 796
Query: 671 ISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV 730
+ LIND+LD +KIE+G+L+ E + F L +LD+ + S +A KG+E VP
Sbjct: 797 LLLINDILDFSKIEAGKLDLEIIDFDLLSLLDDFAATLSMRAFSKGVEFLCVADPDVPIQ 856
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHK 790
+ GDPGR RQI+TNL GNSIKFT ++G + + V S++ KD
Sbjct: 857 LKGDPGRLRQILTNLAGNSIKFT-NQGEVSIRV-------SRLSEKD------------- 895
Query: 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850
G++ L ++ DTG+GIP + +F
Sbjct: 896 -----------------------------------GQVVLKFSIFDTGIGIPADKIGLLF 920
Query: 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNS 910
F Q D+ST+R +GGTG+GL+IS+ L ELMGGEIG S G GS F FTV N
Sbjct: 921 NKFTQVDASTTRKFGGTGLGLAISKQLTELMGGEIGVSSIEGKGSEFWFTVHLGIQPDNE 980
Query: 911 LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDT 970
Q+ VP + G+R L++DD + E+ L M +S A + + ++
Sbjct: 981 -----QKKVPIPANLIGVRTLIVDDNATNRELLNARLNAWGMRPDTVDSGPAALNLMIES 1035
Query: 971 CSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
++A++ + D G L +K R G + LL++ D
Sbjct: 1036 EEEGDPFKIAILDMQMPEMD---GATLGEAIKHDERIAG-------THLILLSSLGERGD 1085
Query: 1031 RDELKSDGIVTLLTKPLR----LSVL-IGCFQEDPESSKKLQQKR------KKPSLGHLL 1079
+ G + KPLR +VL I D +S + R ++ S+G
Sbjct: 1086 IHRFEEIGFAGFMVKPLRHTDLFNVLSIALAGNDSSNSPRHILTRHSAREIRRVSIG--- 1142
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL-TPPHNFDACFMDLQMPE 1138
G +IL+V+DN N+ VA LKK G V G A+ L T P+N MD+QMP
Sbjct: 1143 VGARILLVEDNATNQLVALALLKKLGLKSDAVADGAEAIKALETLPYNL--VLMDVQMPI 1200
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG++AT IR++ + + ++P++AMTA+ +Q E+C++ G
Sbjct: 1201 MDGYEATQHIRNIHTRVIDH-----------------NIPVIAMTANALQGDRERCLEAG 1243
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
M+DY+SKP ++L + R+
Sbjct: 1244 MNDYISKPIVFKELSETLERWL 1265
>gi|390949596|ref|YP_006413355.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390426165|gb|AFL73230.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1477
Score = 252 bits (643), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 198/623 (31%), Positives = 299/623 (47%), Gaps = 109/623 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ K AEAA++AKS FL+ +SHEIRTPMN V+G ++ L + QLD + +S
Sbjct: 720 ELETAKLAAEAANLAKSAFLSNMSHEIRTPMNAVIGYAHLIRRDPLTSRQLDQLEKLSDS 779
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+ +IND+LD +KIE+ ++ E F V+D+V L + KG+++ + + D
Sbjct: 780 ARHLLQIINDILDLSKIEANKMTLEVQDFEPARVIDHVCDLLADSIAAKGLDVLVDL-DH 838
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP + GD R QI+ NLVGN++KFT+ G + ++ +VLE++
Sbjct: 839 VPPALRGDGVRLSQILLNLVGNAVKFTEQGG---------------LSIRGQVLEQTPE- 882
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
R+ L V V DTG+G+
Sbjct: 883 ----------------------------------------RLLLRVEVSDTGIGMTSAQV 902
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F F QAD ST+R +GGTG+GL+IS+ L ELMGG IG S PG GS F + F
Sbjct: 903 GRLFRAFEQADESTTRRFGGTGLGLTISKRLTELMGGRIGATSAPGRGSLFWLEIPFGMA 962
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ--LAC 964
L + + FR +R LVIDD + ++ L L M A + + LA
Sbjct: 963 SDCPLPSR------TLEPFRDMRVLVIDDHADARDILASLLVELGMRADTAANGEAGLAA 1016
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGL-VLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
+ +D L++ID W + GL + LK Q L ++R+ P FL+
Sbjct: 1017 AVEADRIGDPY----RLLMID---W-RMPGLDGIDTALKLQ----SLALARH-PD-FLMV 1062
Query: 1024 TSISET-DRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLL--- 1079
T+ ++ RDE GI +L KP+ SVL + + + L H L
Sbjct: 1063 TAYGDSLPRDEAARAGITEILAKPVTPSVLHDALAAALLGHAEGRGQMLPEMLAHELERR 1122
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD--KLTPPHNFDACFMDLQMP 1137
+G +I++V+DN+VN+ V L G + + GR A+D +LT ++D MD+QMP
Sbjct: 1123 QGARIMLVEDNLVNQEVTCQLLDSVGMRASVAENGRVALDMAQLT---DYDLILMDIQMP 1179
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG QAT IR L G VPILAMTA+ +C++
Sbjct: 1180 VMDGLQATRAIRQLP--------------------GRRSVPILAMTANAFDEDRRRCLEA 1219
Query: 1198 GMDDYVSKPFEDEQLYTAVARFF 1220
GM+D+++KP E +LY ++ ++
Sbjct: 1220 GMNDHLAKPIEPNKLYKSLLKWL 1242
>gi|237729749|ref|ZP_04560230.1| sensory histidine kinase [Citrobacter sp. 30_2]
gi|226908355|gb|EEH94273.1| sensory histidine kinase [Citrobacter sp. 30_2]
Length = 918
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 193/628 (30%), Positives = 301/628 (47%), Gaps = 118/628 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD+V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-GGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F ++ L+P VI D+S + L +E A
Sbjct: 513 WFHISL------DLNPN-----------------VIVDRSTTLCLAGKRLAYVEPN---A 546
Query: 958 NSMQLACSYLSDTCSTSVL-PQLA-LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
+ Q LS+T + P + L D+ I + L L Q + L +
Sbjct: 547 TAAQCTLDILSETPLEVIYSPSFSGLPAEHYDILLLGIPVTLREPLTMQHER--LASAAA 604
Query: 1016 LPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE---SSKKLQQKRK 1071
+ LLA ++ + ++LK G L KPL + L+ E + S+ L
Sbjct: 605 MTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHSADPLLLDES 664
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
K ++ ++ VDDN N ++ L+ V D G AVD+ FD
Sbjct: 665 KIAM-------TVMAVDDNPANLKLIGALLEDKVQHVVLCDSGHQAVDR-ARQMPFDLIL 716
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP+MDG +A I L ++ P++A+TA +
Sbjct: 717 MDIQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQK 756
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+++L+ + R+
Sbjct: 757 EKLLSAGMNDYLAKPIEEDKLHNLLLRY 784
>gi|337266306|ref|YP_004610361.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
WSM2075]
gi|336026616|gb|AEH86267.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
WSM2075]
Length = 762
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 189/644 (29%), Positives = 290/644 (45%), Gaps = 122/644 (18%)
Query: 588 GHIFHAAINR-IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQM 646
G H AI R I + ++ + RAE A AKS+FLATVSHEIRTPMNG++GM ++
Sbjct: 220 GAASHRAIARDITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARL 279
Query: 647 LMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLS 706
L DT L Q Y S L++LI D+LD +KIE+GR +PE P + ++ DN++
Sbjct: 280 LADTSLSPEQQTYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQPISVREIADNIIE 339
Query: 707 LFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766
L +++A K I L +V VP+++ DPGR RQ++ NL+GN+IKFT D G + VSV
Sbjct: 340 LLAARAFAKDIGLGCHVEPDVPQMITADPGRVRQVLLNLIGNAIKFT-DGGGVLVSV--- 395
Query: 767 DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG 826
R++ D++ + +T G D + +E F+ D T+T
Sbjct: 396 --ARARTATTDRICF-----------TIADTGPGLRDEDMERIFEEFEQADGTST----- 437
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
RT+GG G+GL+IS+ LV MGG I
Sbjct: 438 -----------------------------------RTHGGAGLGLAISKRLVAAMGGTIS 462
Query: 887 FVSEPGTGSTFSFTV---TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
S G GS F F + TE + LD G RA+++ ++ A+
Sbjct: 463 VSSRLGQGSEFVFEIPATAATEAPQGRLD-----------ALAGRRAVILSRNAVEADAI 511
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
++ +A ++ A + + C ++L+D + + + +LK+
Sbjct: 512 ARTIRASGGTAGIATTVAQAAPF-AHGCD--------VLLVDAAMEESD-----GRLLKR 557
Query: 1004 QRRKGGLEISRNLPKIFLLATSISETDR---DELKSDGIVTLLTKPLRLSVLIGCF--QE 1058
R+ G + T I+ TDR E ++ G T L +P+R L+
Sbjct: 558 LRQSGFSDCE--------AITLIAPTDRGMLGEFRASGYTTFLARPVRGGTLLRVLLSSH 609
Query: 1059 DPESSKKLQQKRKKPSL---GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
P + +KR+ P+L +G +L+ +DN +N +A L K G V V G+
Sbjct: 610 APALAHPQPEKRRAPALRASSERQQGLSVLIAEDNDINAMLARATLLKAGHRVQVVGNGK 669
Query: 1116 AAVDKLTPP---HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNV 1172
AAV+ +T H FD MDL MP MDG A IR E E +
Sbjct: 670 AAVEAVTSAGHKHRFDVVLMDLHMPVMDGLDAIAAIRRHEEETSAP-------------- 715
Query: 1173 GLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
VPI+ ++AD + + + G +V+KP + + L AV
Sbjct: 716 ---PVPIMVLSADSQEKTRHAVLAHGASGFVTKPLDPDALVNAV 756
>gi|385787352|ref|YP_005818461.1| hybrid sensory histidine kinase BarA [Erwinia sp. Ejp617]
gi|310766624|gb|ADP11574.1| hybrid sensory histidine kinase BarA [Erwinia sp. Ejp617]
Length = 909
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 187/609 (30%), Positives = 293/609 (48%), Gaps = 110/609 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L++ Q DY T S +L+
Sbjct: 283 KRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTMLNSTQRDYLHTIERSANNLL 342
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
S+INDVLD +K+E+G+L E +PF L LD V+ L + A++KG+EL + + VP+
Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDP R +QII NL+GN+IKFT+ G+I D+R +EK
Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFTE-SGNI--------DIR---------VEK--------- 435
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
++ N +M +L V + DTG+GI + Q ++F
Sbjct: 436 ----------------RALSNNRM-------------ELEVQIHDTGIGISEKQQSQLFQ 466
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR +GGTG+GL I++ LV MGGEI F S GSTF F + +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHINLELNPNAAS 526
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
DP+ V G ++ + A+ M + A MQ++ S
Sbjct: 527 DPRIMDCV------EGQHLAYVEPNAAAAKAV--------MEMLNATPMQVSYS------ 566
Query: 972 STSVLPQLALVLIDK-DVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
P L + D+ DV + +V + L+ + + R I L + +
Sbjct: 567 -----PSLDELAQDRYDVLLMGLPVVQGHSLEIDEEQLTPILQRANSVIMALPFQM-QIY 620
Query: 1031 RDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDN 1090
++LK+ G+ L KPL ++ L+ P ++ +P L +++ VDDN
Sbjct: 621 AEDLKARGVTACLIKPLSMTRLL------PVLVDHHHRRDMQPQAERTLLPLRVMAVDDN 674
Query: 1091 MVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRH 1150
N ++ L++ A + D G AA+ + H D MD+QMP++DG +A+ +IR
Sbjct: 675 PANLKLIGALLEEQVADIVLCDSGEAAIAQARLQH-LDIILMDIQMPDIDGIRASERIRE 733
Query: 1151 LENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDE 1210
L N PI+A+TA + +Q MK GM+DY++KP +++
Sbjct: 734 LPQHTN--------------------TPIVAVTAHAMDGERQQLMKAGMNDYLAKPIDEQ 773
Query: 1211 QLYTAVARF 1219
+L +AR+
Sbjct: 774 KLSRLLARY 782
>gi|424034026|ref|ZP_17773436.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HENC-01]
gi|408873770|gb|EKM12959.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HENC-01]
Length = 932
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 184/601 (30%), Positives = 289/601 (48%), Gaps = 104/601 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L +Q DY QT S +L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +K+E+G+L E +PF + L+ V++L ++ A++KG+E+ + V ++P+ +
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGL 400
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +QI+TNLVGNSIKFT+ R +D+ ++ +S +SV+
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTE---------------RGNIDISVEMRSQSGDSVE--- 442
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
L V DTG+GI Q ++F
Sbjct: 443 --------------------------------------LQFMVRDTGIGISERQQAQLFQ 464
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF FTV E
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRLHSTEMPMS 524
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
D + +V G + L+++ A VT+ L + + V +S+ +D
Sbjct: 525 D------LIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRSSLP-----ENDEN 573
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
VL LA ++ D+ + ++Q +R P + + S
Sbjct: 574 YDYVLLNLA---ANQTYDDQSVA----AWIEQAKRMA--------PSVIMGTPSTELALA 618
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNM 1091
D++ +D + LTKPL L+ D + + +P + L +L VDDN
Sbjct: 619 DQVMNDHQIQCLTKPLSRRKLLQSLITDHVETPQAVIAPIEPVVNERLP-LTVLAVDDNP 677
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
N ++ LK+ VT G+ AV+ L +D FMD+QMP MDG A I+ L
Sbjct: 678 ANLKLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQHIKEL 736
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
E+N+ P++A+TA + ++ + GMDDY++KP E+
Sbjct: 737 --ELNKD------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHV 776
Query: 1212 L 1212
L
Sbjct: 777 L 777
>gi|424039479|ref|ZP_17777845.1| signal transduction histidine-protein kinase BarA, partial [Vibrio
cholerae HENC-02]
gi|408892939|gb|EKM30284.1| signal transduction histidine-protein kinase BarA, partial [Vibrio
cholerae HENC-02]
Length = 931
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 184/601 (30%), Positives = 289/601 (48%), Gaps = 104/601 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L +Q DY QT S +L+
Sbjct: 280 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 339
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +K+E+G+L E +PF + L+ V++L ++ A++KG+E+ + V ++P+ +
Sbjct: 340 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGL 399
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +QI+TNLVGNSIKFT+ R +D+ ++ +S +SV+
Sbjct: 400 VGDPLRIQQILTNLVGNSIKFTE---------------RGNIDISVEMRSQSGDSVE--- 441
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
L V DTG+GI Q ++F
Sbjct: 442 --------------------------------------LQFMVRDTGIGISERQQAQLFQ 463
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF FTV E
Sbjct: 464 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRLHSTEMPMS 523
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
D + +V G + L+++ A VT+ L + + V +S+ +D
Sbjct: 524 D------LIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRSSLP-----ENDEN 572
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
VL LA ++ D+ + ++Q +R P + + S
Sbjct: 573 YDYVLLNLA---ANQTYDDQSVA----AWIEQAKRMA--------PSVIMGTPSTELALA 617
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNM 1091
D++ +D + LTKPL L+ D + + +P + L +L VDDN
Sbjct: 618 DQVMNDHQIQCLTKPLSRRKLLQSLITDHVETPQAVIAPIEPVVNERLP-LTVLAVDDNP 676
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
N ++ LK+ VT G+ AV+ L +D FMD+QMP MDG A I+ L
Sbjct: 677 ANLKLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQHIKEL 735
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
E+N+ P++A+TA + ++ + GMDDY++KP E+
Sbjct: 736 --ELNKD------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHV 775
Query: 1212 L 1212
L
Sbjct: 776 L 776
>gi|424660224|ref|ZP_18097471.1| sensory box protein [Vibrio cholerae HE-16]
gi|408050909|gb|EKG86037.1| sensory box protein [Vibrio cholerae HE-16]
Length = 1331
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 191/622 (30%), Positives = 290/622 (46%), Gaps = 110/622 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
+E+ + K A+A AK FLA +SHEIRTPMN +LGM + ++T+LD Q Y +
Sbjct: 591 YELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDTTQRKYVTRINE 650
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 651 SAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDP 710
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 711 HIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIG 769
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
Q K D +++ F DN+ T
Sbjct: 770 IAQDKLDDLFDA---------------FSQADNSIT------------------------ 790
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ----------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGEGSTFEFSVVC-- 832
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
D K + V R LV+DD + A H+ +S+ A
Sbjct: 833 ---GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMR 875
Query: 966 YLSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
+ T S L ++ D D + + L + + GL R K FL+
Sbjct: 876 FNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGYMKSFLVT 932
Query: 1024 TSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL----- 1078
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 933 AYGREINLEGENSKLVDALIVKPVNPSNLLDAIM----TSYGIEHVRHKTNEAHHNSRPN 988
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
G+ +L+V+DN VN+ VA G L+ G V + G+ A+D+L +FD MD+QMP
Sbjct: 989 FAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALDRLEHA-DFDLVLMDMQMPV 1047
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG AT IR N +PI+AMTA+ + E+C++ G
Sbjct: 1048 MDGVTATEYIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAG 1087
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
M++++SKP E ++ Y + F
Sbjct: 1088 MNEHLSKPIEVDKFYQVLRHFL 1109
>gi|410663989|ref|YP_006916360.1| PAS domain-containing protein [Simiduia agarivorans SA1 = DSM 21679]
gi|409026346|gb|AFU98630.1| PAS domain-containing protein [Simiduia agarivorans SA1 = DSM 21679]
Length = 1423
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 191/615 (31%), Positives = 296/615 (48%), Gaps = 116/615 (18%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A +AKSQFLA +SHEIRTP+N ++GM Q+ ++TE QL Y +T S L+ +I
Sbjct: 774 AEEASLAKSQFLANISHEIRTPLNAIIGMSQLTLNTE----QLRYLKTIEYSSHTLLGVI 829
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
NDVLD +KIE+G+L+ E +PF+L L+ + + + +A +KG++ + + VP ++GD
Sbjct: 830 NDVLDFSKIEAGKLQIESIPFNLEASLEAISQMTALRAQEKGVDFLLDIDIGVPSQLVGD 889
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P R QI+TNL N+ KFT ++GHI + L + V
Sbjct: 890 PLRLSQILTNLCSNATKFT-EQGHITLGTKLLSETEQTV--------------------- 927
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
TL F VEDTG+G+ E Q ++F F
Sbjct: 928 --TLEFF--------------------------------VEDTGIGLSAEQQAQLFKAFA 953
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD S +R YGGTG+GLSI R LV LMG EI SE G GS FSF++T +++
Sbjct: 954 QADPSVTRRYGGTGLGLSICRELVRLMGSEIRVTSEVGLGSRFSFSLTLQRDCQST---- 1009
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
Q+ + S L L+++D + A++ L+++ V + + A ++LS+
Sbjct: 1010 -QKALR--STHSELSILLVEDNAATADLLMLALKKMGHRVTHCDGGEQALAHLSNHADYD 1066
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
VL L+D W G+ ++ Q + + N P + ++ T+ ET+ +
Sbjct: 1067 VL------LVD---WQLP-GIPGDALISQVKSRS----DENTPVVVMI-TAFEETEAAPV 1111
Query: 1035 KSD-GIVTLLTKPLRLSVLIGCF-------QEDPESS-KKLQQKRKKPSLGHLLKGKQIL 1085
G LL KP+ S L + P S + R P+ L+G +L
Sbjct: 1112 ACQAGADALLIKPISASTLFDTLDNLTSPIKPKPYSGFTPISPFRIPPT----LRGASLL 1167
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
+V+DN +N+ +A + G V G+ AVD + H D MD+QMP +DG AT
Sbjct: 1168 LVEDNEINQEIAREIFESAGFNVNVASNGQDAVDWFSQGHA-DLILMDVQMPVLDGESAT 1226
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
IR E G+S VPI+AMTA+ ++ ++C+ GM+DY++K
Sbjct: 1227 RTIRATEK--------GQS------------VPIIAMTANAMKEDEQRCLAAGMNDYLTK 1266
Query: 1206 PFEDEQLYTAVARFF 1220
P ++ V ++
Sbjct: 1267 PINIDKALATVCQWL 1281
>gi|395762839|ref|ZP_10443508.1| multi-sensor hybrid histidine kinase [Janthinobacterium lividum PAMC
25724]
Length = 974
Score = 251 bits (642), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 199/624 (31%), Positives = 294/624 (47%), Gaps = 109/624 (17%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
+M+ + +AEAA AKS+F+A +SHEIRTPMN ++G+ ++L ++ L+ + Y
Sbjct: 227 EQMVRARDKAEAASTAKSEFVANMSHEIRTPMNAIIGLARLLEESPLERRERSYVGKIQM 286
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
+ + L++++NDVLD +KIE+G++ E F L +LD++ L +S A +G+E ++
Sbjct: 287 ATQSLLNIVNDVLDFSKIEAGQMMLEQRRFQLERMLDSIGVLLASSAWARGVEPVFVLAP 346
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VP+ +IGD R QI+ NLVGN++KFT + LA+ D LE S
Sbjct: 347 GVPDELIGDALRVEQILINLVGNAVKFTSQGEVVLAIAMLAE------DAASATLEFS-- 398
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
V DTG+GI
Sbjct: 399 ------------------------------------------------VRDTGIGIGAVE 410
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q RIF F Q DSSTSR YGGTG+GL+I R +VELMGG + S G GS F F+ F
Sbjct: 411 QERIFDAFSQGDSSTSRKYGGTGLGLAICRRMVELMGGNLSVKSALGEGSDFRFSCRF-- 468
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDK-SIRAEVTRYHLQRLEMAVHVANSMQLAC 964
+ + P Q PD S L L+IDD S+RA + + + + A+S
Sbjct: 469 ---DKVAP--QSKPPDKSAPTALSLLIIDDNASVRAMLEHWCAAQGWYS-RSADSGAAGL 522
Query: 965 SYL-SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
+ L + LP LVL+D + D + G+ L L + R L LP + +L
Sbjct: 523 ALLHASAGGLDGLPPADLVLLDAAMPDMD-GISL---LTEMRAAAHLL----LPPVIML- 573
Query: 1024 TSISETDR-------DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
++E DR D L GIV+ P RL + +E + L L
Sbjct: 574 --VAEPDRENLERLADSLMLAGIVSKPATPARLLAAVTAVREGRSAPSALP---VSTPLS 628
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP-PHNFDACFMDLQ 1135
LL+G ++L+V+DN +N+ VA+ L GA V G+ AVD LT P +D MDLQ
Sbjct: 629 GLLEGMRVLLVEDNEINQEVAQYILLHSGARVDVAANGKLAVDLLTSTPDAWDVVLMDLQ 688
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP M+G+ AT IR L GL +PI+AMTA+ + + +
Sbjct: 689 MPVMNGYDATLAIRAL---------------------GLPDLPIVAMTANAMHEDRLRAI 727
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARF 1219
GM+ +V+KP + + + R
Sbjct: 728 SSGMNAHVAKPINVDDMIETLNRL 751
>gi|395762634|ref|ZP_10443303.1| multi-sensor hybrid histidine kinase [Janthinobacterium lividum PAMC
25724]
Length = 1184
Score = 251 bits (642), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 202/641 (31%), Positives = 295/641 (46%), Gaps = 135/641 (21%)
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
LVG I + + A+ ++ K AE+A +KS+FLA +SHEIRTPMNG+LGM
Sbjct: 501 LVGTIVDISSQKAAE-----RALLLAKEVAESASRSKSEFLANMSHEIRTPMNGILGMTD 555
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
+++D+ELD Q Y + S L+ +IND+LD +KIE+G L E +PF+L ++ +
Sbjct: 556 LVLDSELDIHQRKYLEIVKASADALLGIINDILDFSKIEAGMLTLESIPFNLRQLMQESM 615
Query: 706 SLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
+ +A G+EL + V +P+ ++GDPGR RQ++TNL GN+IKFT +G + VS L
Sbjct: 616 RALAVRAQVSGLELVLDVDPALPQTLLGDPGRLRQVLTNLAGNAIKFTP-RGEVTVSARL 674
Query: 766 A--DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME 823
DD +++V + V +T G + ++ F+ D + T
Sbjct: 675 GACDDGKAQVQL-----------------CVRDTGIGIAADMQEAVFDAFQQEDGSTT-- 715
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
R +GGTG+GLSI+R LV +MGG
Sbjct: 716 --------------------------------------RRFGGTGLGLSITRRLVSMMGG 737
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGE-RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEV 942
IG SE G GS+F+ + GE + L P PD S G L+IDD S +
Sbjct: 738 SIGLSSELGKGSSFTVDLALNIGEDQPCLTP------PDAS-LTGRTLLLIDDNSSSLSI 790
Query: 943 TRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLK 1002
R + AV S + A + C S LP +D +++ + +
Sbjct: 791 LRQIFEGSGAAVTACTSGEAALEH----CR-SALP------VDC--------IIMDFAMP 831
Query: 1003 QQRRKGGLEISRNLP-----KIFLLATSISETDRDELKSDGIVTLLTKP--------LRL 1049
G LP I +L++S + D + GI L KP + +
Sbjct: 832 GMNGFGTASALAALPHWSEVPIVMLSSSGNLADAARCRELGIEGYLLKPASPEELLAITM 891
Query: 1050 SVLIGCFQEDPESSKKLQQ---KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGA 1106
SVL C + P ++ + Q + PSL IL+V+DN +NR +A L G
Sbjct: 892 SVLGTC-RGAPSATPAVTQHGVREGTPSL-------DILLVEDNAMNRELATVLLSHAGH 943
Query: 1107 IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSA 1166
VT G+ A+D H FD MDLQMPEM GF+AT QIR E +
Sbjct: 944 RVTHAANGQQALDCQASGH-FDMILMDLQMPEMGGFEATAQIRQREAQ------------ 990
Query: 1167 EMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
G+ I+AMTA + E+C+ GMDDY+SKPF
Sbjct: 991 ------GMARSVIIAMTASAFEGDRERCIAGGMDDYLSKPF 1025
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 22/135 (16%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L G+ +L++DDN + + + GA VT G AA++ D MD MP
Sbjct: 773 LTGRTLLLIDDNSSSLSILRQIFEGSGAAVTACTSGEAALEHCRSALPVDCIIMDFAMPG 832
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKC 1197
M+GF +A + W VPI+ +++ A +C +
Sbjct: 833 MNGF---------------------GTASALAALPHWSEVPIVMLSSSGNLADAARCREL 871
Query: 1198 GMDDYVSKPFEDEQL 1212
G++ Y+ KP E+L
Sbjct: 872 GIEGYLLKPASPEEL 886
>gi|171059183|ref|YP_001791532.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170776628|gb|ACB34767.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 957
Score = 251 bits (642), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 200/627 (31%), Positives = 295/627 (47%), Gaps = 116/627 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + + AEAA+ AKS FLA +SHEIRTPMN ++G+ Q+L T D A + ++
Sbjct: 273 ELAQARDHAEAANRAKSTFLANMSHEIRTPMNAIIGLTQLLRRTHRDPAGAEQLAKVADA 332
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +INDVLD +KIESG++E E + L ++L LSL SS+A++KG+EL + +D
Sbjct: 333 ADHLLQIINDVLDLSKIESGKVELESIDIDLDELLSRTLSLVSSRAHEKGLEL-VLDTDH 391
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P + GDP R Q + NL+ N+IKFT D G + +
Sbjct: 392 LPRTLRGDPTRLSQALLNLLTNAIKFT-DHGSVILRGQ---------------------K 429
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+Q +D V+ S V+DTG+G+ +
Sbjct: 430 LQDGADGVHVRFS----------------------------------VQDTGIGVEADQV 455
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+F F Q DSST+R +GGTG+GL+I+R L +LMGGE G S G GSTF FT
Sbjct: 456 EALFLAFEQGDSSTTRRHGGTGLGLAITRHLAQLMGGESGADSVAGQGSTFWFTARLAHA 515
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+L P + + GLR L+ DD E ++ + + V S + A +
Sbjct: 516 --RTLQPPRRP-----TALHGLRVLLADDLEPAREAMAEMMRSIGLRVDAVASGEQALAA 568
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
L D LVL+D W GL ++ RR L + + P + +
Sbjct: 569 LQDVSPDPY----RLVLLD---WCMP-GL---DGIETARRMAQLALPQRPPVVL-----V 612
Query: 1027 SETDRDEL----KSDGIVTLLTKPLRLSVL----IGCFQED-PESS----KKLQQKRKKP 1073
S D D L ++ GI T+L KPL S L IG Q D P ++ + LQQ ++
Sbjct: 613 SAQDDDTLPALARTVGIGTVLLKPLTASSLHDAVIGLLQIDAPRAAATPPQALQQLERQL 672
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
H G +L+ +DN +N+ VA L+ G V D G A+ + ++ A MD
Sbjct: 673 RQRH--GGAPVLLAEDNPINQEVASSLLQLAGLQVDVADDGAQAL-AMAETTDYRAILMD 729
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP MDG QAT IR L A+G +PI+AMTA+
Sbjct: 730 MQMPVMDGLQATRAIRALPR------AAG--------------LPIIAMTANAFGEDRAA 769
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARFF 1220
C+ GM+D+++KP + LY + R+
Sbjct: 770 CLAAGMNDHIAKPVNAQVLYATLLRWL 796
>gi|37681007|ref|NP_935616.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus YJ016]
gi|37199757|dbj|BAC95587.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
Length = 928
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 199/670 (29%), Positives = 308/670 (45%), Gaps = 121/670 (18%)
Query: 552 DPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMME- 610
D R+ ++ R + K ++ I + I+L H+ + I Q +D E +E
Sbjct: 212 DRIRRGQLDVRIEGKMHGELDSLKNGINAMAISLSEYHV--EMQHSIDQATSDLRETLEQ 269
Query: 611 ----------LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L +Q DY
Sbjct: 270 LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQTDYL 329
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
QT S +L+++IND+LD +K+E+G+L E +PF + L+ V+SL ++ A++KG+E+
Sbjct: 330 QTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEIT 389
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
+ + R+PE V+GDP R +Q++TNLVGNSIKFT+ R +DV ++
Sbjct: 390 LKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTE---------------RGNIDVSVEMR 434
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
+S +S + L V+DTG+G
Sbjct: 435 AQSGDS-----------------------------------------LDLQFMVKDTGIG 453
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
I Q ++F F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF FT
Sbjct: 454 ISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513
Query: 901 VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
+ + D +Y +G L+++ A VT+ L ++ ++V
Sbjct: 514 LRLHSTQMPMSDSIEAEY------LQGKELLLVEPNMQAAAVTQQVL--MQEGINVTYR- 564
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
S L D L+L + V++ E + +++ + L IS N
Sbjct: 565 ----SLLPDNAKGYDFVLLSLAV--NQVYELET--IENWLSR------ALHISAN---TI 607
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK 1080
L S D+L + LTKPL L+ + + LQ P +
Sbjct: 608 LAIPSTELALADQLTERFGIQCLTKPLGRRKLLQSL----AAKQTLQPLLPAPENAQAER 663
Query: 1081 GK-QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
+L VDDN N ++ L + VT G+ AVD T FD FMD+QMP+M
Sbjct: 664 SSLSVLAVDDNPANLKLITALLAERVVSVTSCSSGQDAVDIATS-RQFDLIFMDIQMPKM 722
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG A I+ E N P++A+TA + ++ +K GM
Sbjct: 723 DGVTACKLIKQTELNAN--------------------TPVIAVTAHAMSGERDRLLKAGM 762
Query: 1200 DDYVSKPFED 1209
DDY++KP E+
Sbjct: 763 DDYLTKPIEE 772
>gi|27364942|ref|NP_760470.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus CMCP6]
gi|27361088|gb|AAO09997.1| BarA sensory histidine kinase (= VarS = GacS) [Vibrio vulnificus
CMCP6]
Length = 928
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 200/670 (29%), Positives = 306/670 (45%), Gaps = 121/670 (18%)
Query: 552 DPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMME- 610
D R+ ++ R + K ++ I + I+L H+ + I Q +D E +E
Sbjct: 212 DRIRRGQLDVRIEGKMHGELDSLKNGINAMAISLSEYHV--EMQHSIDQATSDLRETLEQ 269
Query: 611 ----------LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L +Q DY
Sbjct: 270 LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQTDYL 329
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
QT S +L+++IND+LD +K+E+G+L E +PF + L+ V+SL ++ A++KG+E+
Sbjct: 330 QTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEIT 389
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
+ + R+PE V+GDP R +Q++TNLVGNSIKFT+ R +DV ++
Sbjct: 390 LKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTE---------------RGNIDVSVEMR 434
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
+S +S I L V+DTG+G
Sbjct: 435 AQSGDS-----------------------------------------IDLQFMVKDTGIG 453
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
I Q ++F F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF FT
Sbjct: 454 ISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513
Query: 901 VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
+ + D +Y +G L+++ A VT+ L + + V
Sbjct: 514 LRLHSTQMPMSDSIEAEY------LQGKELLLVEPNMQAAAVTQQVLTQEGINVTYR--- 564
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
S L D L+L + V++ E + +++ + L IS N
Sbjct: 565 ----SLLPDNAKGYDFVLLSLAV--NQVYELET--IENWLSR------ALHISAN---TI 607
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK 1080
L S D+L + LTKPL L+ + + LQ P +
Sbjct: 608 LAIPSTELALADQLTERFGIQCLTKPLGRRKLLQSLA----AKQTLQPLLPAPENAQAER 663
Query: 1081 GK-QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
+L VDDN N ++ L + VT G+ AVD T FD FMD+QMP+M
Sbjct: 664 SSLSVLAVDDNPANLKLITALLAERVVSVTSCSSGQDAVDIATS-RQFDLIFMDIQMPKM 722
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG A I+ E N P++A+TA + ++ +K GM
Sbjct: 723 DGVTACKLIKQTELNAN--------------------TPVIAVTAHAMSGERDRLLKAGM 762
Query: 1200 DDYVSKPFED 1209
DDY++KP E+
Sbjct: 763 DDYLTKPIEE 772
>gi|304309740|ref|YP_003809338.1| histidine kinase [gamma proteobacterium HdN1]
gi|301795473|emb|CBL43671.1| predicted histidine kinase [gamma proteobacterium HdN1]
Length = 895
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 212/676 (31%), Positives = 319/676 (47%), Gaps = 110/676 (16%)
Query: 557 HEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKA--- 613
+E HC ++ +GV+V + H+ A + + A++ + YH +E K
Sbjct: 307 NEPHCNGCDSLDESYSQRQDELGVMVRSYF--HLKDALLRKNAEL-SAYHSELEQKVEER 363
Query: 614 --RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
+ E A+ AKS+FLA +SHEIRTPMNGVLGM ++L+ TEL+ Q Y +T HNS L+
Sbjct: 364 TRKLEKANQAKSEFLANMSHEIRTPMNGVLGMTELLLGTELNTRQQQYTRTIHNSALSLL 423
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+IND+LD +KIE+G+LE E VPF+L ++D+ ++FS K QK I+L ++ P +
Sbjct: 424 GIINDILDYSKIEAGKLELESVPFNLEILVDDCTAIFSLKCAQKPIQLTSRIAPGTPIDL 483
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R RQI+ NL GN+ KFT+ KG I + + +D +V +K + + + + +
Sbjct: 484 VGDPTRLRQILINLTGNAFKFTE-KGEICIGIEFLEDHSKQVRLKFSIRDSGIGLSEEQI 542
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
K++ ++F D + T
Sbjct: 543 GKLF---------------QSFSQADTSTT------------------------------ 557
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
R YGGTG+GL+I + L ELM GEIG S G G+TF FT
Sbjct: 558 ----------RKYGGTGLGLAICKQLAELMEGEIGVDSRLGHGATFWFTAWLGVEASPKA 607
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
DP + + + S G R L++ E+ Q M V VA ++Q A L+ +
Sbjct: 608 DPS--RKILEAS-MNGKRLLLVGPADHWREIVAERAQAWNMDVSVAENIQQAAGLLA-SA 663
Query: 972 STSVLPQLALVLID-KDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
+ P AL+L D + ++ L H R+K L NLP S
Sbjct: 664 QEAEKPISALLLGDPANALEQARTLAGHSAYA--RQKMILTHPANLPP-------TSPWL 714
Query: 1031 RDELKSDGIVTLLTKPLRLSVLIGCFQE----DPESSKKLQQKR-KKPSLGHLLKGKQIL 1085
R++ G LL +P L L D +S+ L +++ P L HL +IL
Sbjct: 715 REQ--PLGRYLLLERPTPLQELRNLLGRASGADISTSEALSKEQLTLPDLSHL----RIL 768
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL---TPPHNFDACFMDLQMPEMDGF 1142
V +DN VN+ V EG LKK A T V+ G+ AVD +PP FD MD +MP++DG+
Sbjct: 769 VAEDNKVNQMVIEGLLKKLHANTTTVENGQLAVDACSTASPP--FDLVLMDCEMPQLDGW 826
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
A+ QIR + S + V I+A++A + E+ + GM+DY
Sbjct: 827 SASRQIRD-----RHTLRSNGAP-----------VVIIALSAHAMNVEKEKAQEAGMNDY 870
Query: 1203 VSKPFEDEQLYTAVAR 1218
+SKP +L A R
Sbjct: 871 LSKPISLSRLVEAFER 886
>gi|386827600|ref|ZP_10114707.1| PAS domain S-box [Beggiatoa alba B18LD]
gi|386428484|gb|EIJ42312.1| PAS domain S-box [Beggiatoa alba B18LD]
Length = 1359
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 197/642 (30%), Positives = 310/642 (48%), Gaps = 116/642 (18%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++ K AEAA AKS+FLA +SHEIRTPMNGV+GM ++L++T L Q +YA NS
Sbjct: 497 LLRAKETAEAATRAKSEFLANMSHEIRTPMNGVMGMTELLLNTTLTVQQREYASIIRNST 556
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
L +L+ND+LD +KIE+G+L E +PF L V L S A+ KG +L + S
Sbjct: 557 NALQTLLNDILDFSKIEAGKLTLEPIPFDLETATLEVARLLSITASSKGFDLIVRYSPTA 616
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P VIGD GR RQI+TNL GN++KFTQ +G++FV+ VD ++ E+++
Sbjct: 617 PRYVIGDAGRMRQILTNLTGNAVKFTQ-RGYVFVN----------VDCAERTGEEAVIRF 665
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
Q + +T G V ++ F D + T
Sbjct: 666 Q-----IQDTGVGIAVDKLEAIFDKFTQADTSTT-------------------------- 694
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R +GGTG+GL+I++ LV LM G+I +S+ G GS F+ ++ F
Sbjct: 695 --------------RKFGGTGLGLAITKQLVTLMNGKINVISDVGKGSMFTVSIPFPLV- 739
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
+N+++ + + + R LV+DD + +V + L+ + V N + A L
Sbjct: 740 KNAVEMPTRPQIALPNTLINTRVLVVDDNIVNQQVLQEQLESFSIRCDVCNDAETALQRL 799
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+++ + P L+L + D G VL +++ ++ N + LL+++
Sbjct: 800 AESYAAQD-PYWLLIL--DYIMDGMNGEVLGETIRKDQK-------YNNTLLILLSSTGC 849
Query: 1028 ETDRDELKSDGIVTLLTKPL---RLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK---- 1080
+ D L++ G L KPL L I D + +K Q K ++ ++L
Sbjct: 850 QYDAQILQNKGFSAYLLKPLPVRHLRQTIIALWSDYQ-NKFAQTFIKIDTVPNILPNKLN 908
Query: 1081 ---------------------GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD 1119
G ++L+++DN VNR VA L++ G VT G+ AV+
Sbjct: 909 DKAINGGNSEANTQINLRAPLGTRVLLIEDNDVNRLVAMNMLQELGCQVTEAINGKMAVE 968
Query: 1120 K-LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
K L + +D MD+QMPEMDG +AT IR LEN IN+ H+
Sbjct: 969 KILDNDYQYDFVLMDVQMPEMDGIEATRLIRELEN-INQ------------------HLI 1009
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
I+AMTA ++ ++C+K GMDDY++KP E+L + ++
Sbjct: 1010 IIAMTAGAMKGDADRCLKAGMDDYLAKPITLERLTAVIGKYI 1051
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 137/298 (45%), Gaps = 40/298 (13%)
Query: 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDK 986
G R L+I+D + V LQ L V A + ++A + D Q VL+D
Sbjct: 930 GTRVLLIEDNDVNRLVAMNMLQELGCQVTEAINGKMAVEKILDNDY-----QYDFVLMDV 984
Query: 987 DVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKP 1046
+ + + G+ ++++ I+++L I + A ++ + D D G+ L KP
Sbjct: 985 QMPEMD-GIEATRLIRELEN-----INQHLIIIAMTAGAM-KGDADRCLKAGMDDYLAKP 1037
Query: 1047 L---RLSVLIGCF--QEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGAL 1101
+ RL+ +IG + E P +S+KL K L + +++L+V+DN VN VA L
Sbjct: 1038 ITLERLTAVIGKYIALEQP-NSEKLTTKEGNMMLPN---QQKVLLVEDNEVNSLVAITML 1093
Query: 1102 KKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161
++ G V V G+ AV + +D MD++MP MDG +AT QIR E +
Sbjct: 1094 EQLGYQVESVVNGKEAV-AICQEKQYDIILMDIRMPVMDGVEATKQIRLHERK------- 1145
Query: 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ PI+A+TA+ + + GM+D + KPF E L + ++
Sbjct: 1146 -----------ETYQTPIIALTANTQPHEVKHYREVGMNDCLGKPFSIEGLQQVLKKY 1192
>gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
Length = 818
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 193/637 (30%), Positives = 300/637 (47%), Gaps = 116/637 (18%)
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
+++NR Q+E E+ A++A+ AKS FLA +SHEIRTPM GVLGM ++L++T+L
Sbjct: 159 SSVNR--QLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTDL 216
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
Q + ++ SG+ L+ +IN++LD +KIE+GR+E E +PF LH + + +++F+ A
Sbjct: 217 SKEQARFVESVRRSGEALLGIINNILDFSKIEAGRMELETIPFDLHQLAADAVAMFAEDA 276
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+KGI L+ + +P + GDPGR RQ++ NL+GN++KFT + G + +SV LA R
Sbjct: 277 AKKGIALSCRIEPGLPGMFQGDPGRLRQVMVNLLGNAVKFTPE-GAVTLSVSLA---REP 332
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
V+ V + + + +++++ +F D + T
Sbjct: 333 ALVRVTVEDTGIGISRESQERIFD---------------HFAQGDESMT----------- 366
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
R YGGTG+GL+I++ L ELMGG + SEPG
Sbjct: 367 -----------------------------RRYGGTGLGLAIAKQLTELMGGVMELSSEPG 397
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPD--VSEFRGLRALVIDDKSIRAEVTRYHLQRL 950
G++FSFTV +L P + P+ S R RAL+ D LQ
Sbjct: 398 EGASFSFTV--------ALKPHHKAPRPERSYSALRSKRALLASDDP--------ELQET 441
Query: 951 EMAVHVANSMQLACSYLSDT----CSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
+ + M L C + D C P LVL+D V + GL L ++
Sbjct: 442 LLELTGGLGMDLDC--VGDAPGALCRLLAAP-FDLVLMDHCVAGTD-GLALAATIRS--- 494
Query: 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKL 1066
+ + + ++ LLA + ++ + L L L ++
Sbjct: 495 ---IAVGHCV-RLVLLAEEPEAAPAERVREIEVTLLRRTNLTREGLYAALASALGMEEEQ 550
Query: 1067 QQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN 1126
+ P+L L +Q+L+V+DN+VN+ V G L+ G V + G AA+ K
Sbjct: 551 GEGEDAPTLRRL---RQVLLVEDNVVNQEVGRGMLESLGCRVKVAENGLAAL-KEVQRRK 606
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
+D FMD QMP +DG AT +IR E G SS VPI+A+TA
Sbjct: 607 YDLIFMDCQMPVLDGLGATRRIRQREE--------GSSS----------RVPIIALTAYA 648
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
++ E C+ G DDY+SKPF EQL ++ R G
Sbjct: 649 MKGDREACLAAGADDYLSKPFSREQLSKSIERRLGCG 685
>gi|333984096|ref|YP_004513306.1| Hpt sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333808137|gb|AEG00807.1| Hpt sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 721
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 190/602 (31%), Positives = 290/602 (48%), Gaps = 134/602 (22%)
Query: 629 VSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRL 688
+SHEIRTPMN +LG+ Q+++++EL Q ++ + A S K L++++ND+LD +KIE+G L
Sbjct: 1 MSHEIRTPMNAILGLTQLVLESELKPQQENFLRKALVSSKALLNILNDILDFSKIEAGHL 60
Query: 689 EPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGN 748
+ E +PF + + L + + LF+++ +KG+EL++ ++ P VIGDP R Q++ NL+GN
Sbjct: 61 KLEALPFRIEEALRHSVDLFAARIQEKGLELSVDIAPDTPGEVIGDPLRLAQVLNNLLGN 120
Query: 749 SIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWK 808
++KFT+ +G I +SV PV
Sbjct: 121 AVKFTE-QGEICISVR-------------------------------------PVSSTNN 142
Query: 809 SWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTG 868
W L V DTG+G+ E +F PFMQADS+ +R +GGTG
Sbjct: 143 EW------------------ILHFAVSDTGIGVSEEQADCLFQPFMQADSTINRKFGGTG 184
Query: 869 IGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV----TFTEGERNSLDPKWQQYVPDVSE 924
+GLSI LV LMGG+I S G+ FSFT+ TF + +P
Sbjct: 185 LGLSICHRLVTLMGGQIDVASNKRQGAIFSFTIRAHTTFPAALNLAAEP----------- 233
Query: 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLI 984
G + L++ D++ ++ L+ + V A + + VL A V
Sbjct: 234 LAGKKVLLVSDQNTARQILIRLLKAWRLEVFSAANGE------------EVLEYFAQVER 281
Query: 985 DKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL-----------PKIFLLATSISETDRDE 1033
D + +D VL L Q K GL+I+RN+ P +FL+AT +RDE
Sbjct: 282 DGNSFDA----VLIDSLVQG--KSGLDIARNIDNTTNLKRIGHPSLFLMATV---RERDE 332
Query: 1034 LKSDGIVT----LLTKPL----RLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQIL 1085
L + +T ++TKP+ L+ L+ FQ P S LQ S G +IL
Sbjct: 333 LLAIADITDLIGIITKPILPSDLLNSLVSYFQ--PNSPDDLQHSAGMVSDRSCFDGARIL 390
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
+V+DN++N+ VA L++ G VT GR A+D + +FDA MDL MP MDGF+A
Sbjct: 391 LVEDNLINQEVATVFLQRRGVEVTVAQDGREAIDWVQRA-SFDAVLMDLHMPVMDGFEAA 449
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
IR+ G +PI+AM+A V+ E+C GM D+++K
Sbjct: 450 SCIRN----------------SPLGQT----LPIIAMSAAVMPEDRERCTSVGMVDFIAK 489
Query: 1206 PF 1207
P
Sbjct: 490 PI 491
>gi|433772826|ref|YP_007303293.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
gi|433664841|gb|AGB43917.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
Length = 1516
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 206/671 (30%), Positives = 308/671 (45%), Gaps = 149/671 (22%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
I +++ E+ E + RA AD AKS+FLA +SHEIRTPMNGVLGM ++L + LD Q
Sbjct: 942 ITELKQREAELSEARRRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQK 1001
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
+ SG L+++IND+LD +KI++G+L + PF+L + +++V +L S++A +K +
Sbjct: 1002 TFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDL 1061
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + R+ + IGD GR RQI+TNL+GN++KFT D+GH+ V V +
Sbjct: 1062 ELIVRIEPRLESLFIGDVGRIRQIVTNLLGNAVKFT-DEGHVLVDV-----------TGE 1109
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+V + ++ V +T G P +E F +D ++T
Sbjct: 1110 RVPTGTRLTI-----SVTDTGIGIPEEKLKLVFEKFSQVDTSST---------------- 1148
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
R + GTG+GL+I+ LV+LMGG+IG S G GSTF
Sbjct: 1149 ------------------------RRHEGTGLGLAITSRLVDLMGGDIGVESAEGKGSTF 1184
Query: 898 SFTVTFTEGERNSLDPKWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
FTVT + S Q+ P DV+ G R L++DD AV+
Sbjct: 1185 WFTVTLPGAGQQS----GQRITPVDVT---GARVLIVDDN----------------AVNR 1221
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIG-LVLHYMLKQQRRKGGLEISRN 1015
A + S+ D+C+ + VLI + + +VL Y + + I RN
Sbjct: 1222 AILTEQMTSWTFDSCAAESGAEGLKVLIAAAAYGVAVDCVVLDYQMPEMSGAEMARIVRN 1281
Query: 1016 LPKI----FLLATSISETDRDELKSD-GIVTLLTKPLRLSVLIGCF-------------- 1056
+ ++ TS+ ++ + D GI L KP R SVL+
Sbjct: 1282 TEGLADTPIIMLTSVDQSLANTSYRDLGIDAQLIKPARSSVLLETLVATIQRHRHATSGH 1341
Query: 1057 ------QEDPESSK-----------KLQQKRKKPSL-----GHLLKGKQILVVDDNMVNR 1094
E PE+S+ +LQ + +P L GH L ILV +DN VN+
Sbjct: 1342 AVQPLTGEAPEASRPPPLAPSEQRAQLQPPQVRPRLPATAGGHRL---DILVAEDNEVNQ 1398
Query: 1095 RVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC--FMDLQMPEMDGFQATWQIRHLE 1152
V L + G V GR A+D + C MD+ MPEM G +AT IR LE
Sbjct: 1399 MVFTQILGETGYGFEIVGNGRKALDAF---GTLNPCMILMDVSMPEMSGLEATAAIRLLE 1455
Query: 1153 NEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
E HVPI+ +TA ++ E+C++ GMDDY+ KP L
Sbjct: 1456 QETGT------------------HVPIVGVTAHALKGDRERCLEAGMDDYLPKPISPRAL 1497
Query: 1213 YTAVARFFMSG 1223
V R+ +G
Sbjct: 1498 LEKVERWVGAG 1508
>gi|158338777|ref|YP_001519954.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158309018|gb|ABW30635.1| two-component hybrid sensor and regulator histidine kinase, putative
[Acaryochloris marina MBIC11017]
Length = 826
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 192/618 (31%), Positives = 293/618 (47%), Gaps = 99/618 (16%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E A+AA++AKS+FLA +SHEIRTPMN V+GM +L DT LD Q D+ +T SG
Sbjct: 296 LLESSQAAQAANLAKSEFLAMISHEIRTPMNAVIGMTDLLKDTHLDPHQQDFVETIRTSG 355
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+++IND+LD +KIESG+LE E PF + ++ L + +SKA KG+ELA +
Sbjct: 356 ESLLNIINDILDFSKIESGKLELELHPFPISTCVEEALDIVNSKATAKGLELAYLIEPGT 415
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P + GD R RQI+ NL+GN++KFT D G + V++ S DV + +
Sbjct: 416 PNHIQGDANRLRQILVNLLGNAVKFTAD-GEVIVTI-------SARDVATAEMTPEVPLS 467
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
H+ LL V+DTG+GI E Q
Sbjct: 468 LHE---------------------------------------LLFEVKDTGIGIAPEHQQ 488
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
++F F Q DSS +R YGGTG+GL+IS+ L ELMGG I S+ G GS+F FT+
Sbjct: 489 KLFQSFCQLDSSITREYGGTGLGLAISKQLCELMGGTIWVESQVGIGSSFFFTMA----- 543
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
S P + + +F+ R L+++D + ++ +Q + +A+S A +++
Sbjct: 544 -ASALPGPEDHRATEPQFQNKRVLIVEDNASTGQILCQQVQAWGLVPTLASSGLEALAWV 602
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+ L L + W + L L Q I LP I L A I
Sbjct: 603 KKERFDVAIADLQLPTM---TWSR-----LLSELTQNH------IHAPLPIIGLCA--IG 646
Query: 1028 ETDRDELKSDGIVTLLTKPLR-----LSVLIGCFQEDPE-SSKKLQQKRKKPSLGHLLKG 1081
E+ + L+KP++ ++L P+ + Q KP+ +
Sbjct: 647 ESAAVWQYQPLLSASLSKPVKQFRLYQTLLKALSTHQPDLPQPAISQPPPKPTPSSV--- 703
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ILV +DN++N++V L + G V G + L ++D MD+QMPEMDG
Sbjct: 704 -RILVAEDNVINQKVILKLLDRLGYQADLVTNGLEVLTALQ-EQSYDVVLMDVQMPEMDG 761
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
I + +S E + H I+AMTA+ +Q E + GMDD
Sbjct: 762 -----------------ITTAQSICEQWDKTNRPH--IVAMTANTMQGDRESYLAAGMDD 802
Query: 1202 YVSKPFEDEQLYTAVARF 1219
Y++KP + L ++ F
Sbjct: 803 YIAKPIRLKGLERILSEF 820
>gi|407000332|gb|EKE17662.1| hypothetical protein ACD_10C00329G0001 [uncultured bacterium]
Length = 847
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 193/632 (30%), Positives = 298/632 (47%), Gaps = 106/632 (16%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
I+ V+ ++ K AEAA+ A+ FLA +SHEIRTPMNG++GM ++ +DTELDA Q
Sbjct: 172 ISDVKAAEAALILAKEAAEAANQARGAFLANMSHEIRTPMNGIIGMTELTLDTELDAEQR 231
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
Y +T +S + L+ ++ND+LD +KIE+G++ E + F LHD L + + A++KG+
Sbjct: 232 HYLKTVKSSAESLLVIVNDILDFSKIEAGKIRFETLAFSLHDTLLEAARVLAVSAHKKGV 291
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + +S VP +GDP R RQ+I NL+GN+IKFT+ +G + + V L V +K
Sbjct: 292 ELIVEMSPDVPLRALGDPTRLRQVIINLIGNAIKFTE-RGEVTLLVTLDQITDGSVFIKF 350
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
V + + G P+ + +E F D
Sbjct: 351 SVRDTGI---------------GVPLDKQQAIFEAFSQAD-------------------- 375
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
ST+R +GGTG+GL+IS LV+LM G I S PG GS F
Sbjct: 376 --------------------VSTTRRFGGTGLGLAISSRLVQLMDGRIWLDSTPGVGSVF 415
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
SF F G P +P+ ++++G RAL+I+D + L+RL + V +
Sbjct: 416 SFVARF--GTVLETHPP---ALPE-AKYQGRRALIIEDNAAAGRCLLQMLERLGLQVSLV 469
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
S + + + + + P D D + + L + R + +R
Sbjct: 470 GSAEAGLAAVERSRAVD-FP------YDYIFADANMASPAGFSLAESWR----DTTRRER 518
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPL-------RLSVLIGCFQEDPESSKKLQQKR 1070
+ +L T D L+ + L KP+ L + G E +S L
Sbjct: 519 LLMMLTTENQRHDLTRLREMEVSAHLVKPIGAGDLADALGLAEGVTAELELASFDLGSAE 578
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K +IL+ +DN VN+ +A L++H V + G AV++ H FD
Sbjct: 579 PAD------KALKILLAEDNPVNQELARRLLERHSHRVVVANNGAEAVEQFDNGH-FDII 631
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH----VPILAMTADV 1186
MD+QMP M G +AT IR S EM + + H V I+AMTA+V
Sbjct: 632 LMDMQMPVMGGVEATEVIR---------------SREMRRSWVISHEFRPVYIIAMTANV 676
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ + ++CM+ GM+DYV+KP E+L+ A+AR
Sbjct: 677 MASDRDRCMEAGMNDYVAKPLRSEELFAALAR 708
>gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae CT 5369-93]
gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae CT 5369-93]
Length = 1331
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 194/624 (31%), Positives = 289/624 (46%), Gaps = 113/624 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFFMSG 1223
+D++SKP E ++ Y + F G
Sbjct: 1089 NDHLSKPIEVDKFYQVLRHFLQVG 1112
>gi|188534845|ref|YP_001908642.1| hybrid sensory histidine kinase BarA [Erwinia tasmaniensis Et1/99]
gi|188029887|emb|CAO97771.1| Signal transduction histidine-protein kinase BarA [Erwinia
tasmaniensis Et1/99]
Length = 909
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 183/612 (29%), Positives = 289/612 (47%), Gaps = 108/612 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L++ Q DY T S +L+
Sbjct: 283 KRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTALNSTQRDYLHTIERSANNLL 342
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+INDVLD +K+E+G+L E +PF L LD V+ L + A++KG+EL + + VP+ +
Sbjct: 343 GIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNI 402
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDP R +QII NL+GN+IKFT+ G+I D+R
Sbjct: 403 IGDPMRMQQIIVNLLGNAIKFTE-SGNI--------DIR--------------------- 432
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
V++ S N R++L V + DTG+GI + Q ++F
Sbjct: 433 ------------VEKRASSNN--------------RMELEVQIHDTGIGISDKQQSQLFQ 466
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR +GGTG+GL I++ LV MGGEI F S GSTF F V +
Sbjct: 467 AFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHVNLALNPNAAS 526
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
DP ++ D E + L + + + +A + + N+ + SY S +
Sbjct: 527 DP----HIMDCLENQHLAYVESNPAAAKA------------VLEMLNATPMKVSY-STSL 569
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
++L+ V + + + L ++GG + + +
Sbjct: 570 DELTEEHYDVLLMGLPVMEMQSLEIDEEQLAPMLQRGG--------SVIMALPFQMQVYA 621
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNM 1091
++LK+ G+ L KPL ++ L+ + L P + L +++ VDDN
Sbjct: 622 EDLKARGVTACLIKPLSMTRLLPVLIDHHHRRDLL------PQVERTLLPLRVMAVDDNP 675
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
N ++ L++ + D G AA+ + H D MD+QMPE+DG +A+ IR L
Sbjct: 676 ANLKLIGALLEELVVDIVLCDSGEAAIVQARQQH-LDIILMDIQMPEIDGIRASELIRKL 734
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
N PI+A+TA + EQ M GM DY++KP ++++
Sbjct: 735 PQHAN--------------------TPIVAVTAHAMDGEREQLMNAGMKDYLAKPIDEQK 774
Query: 1212 LYTAVARFFMSG 1223
L +AR+ +G
Sbjct: 775 LGHLLARYSSNG 786
>gi|121605276|ref|YP_982605.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
CJ2]
gi|120594245|gb|ABM37684.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
CJ2]
Length = 1124
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 206/614 (33%), Positives = 287/614 (46%), Gaps = 108/614 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A AK+ FLAT+SHEIRTP+NGV+GM +L +T LDA Q D QT S L+++I
Sbjct: 461 AEEAVRAKAAFLATMSHEIRTPLNGVVGMSTLLAETALDAEQRDILQTIRLSSDQLLAVI 520
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV---- 730
+D+LD +KIESGR + E P +H++++ + + +A +KGIEL + V
Sbjct: 521 SDILDFSKIESGRFDLESEPVSVHNMIEEACDIAAPRAREKGIELIVDVPGAAAGGPPPA 580
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHK 790
++GD R RQI+ NLV N++KFT+ H
Sbjct: 581 ILGDVTRLRQILINLVNNAVKFTE----------------------------------HG 606
Query: 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850
+ V++ L+ P ++ G + +V DTG+GIP E +F
Sbjct: 607 AVSVHSRLAEAP--------------------DEQGLALIEFSVHDTGIGIPPERVGALF 646
Query: 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNS 910
FMQ D+ST+R YGGTG+GL+I + LVELMGG+I S+ G GS FSFTV R +
Sbjct: 647 EAFMQVDASTTRKYGGTGLGLAICKRLVELMGGKISVTSKLGKGSIFSFTV------RAA 700
Query: 911 LDPKWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
L ++ P D + + R LV+DD + V L++ M V A S A L
Sbjct: 701 LAELPKELTPLDAAALQDKRVLVVDDHHVNVRVLMRQLRQWGMRVASAVSGAAALDVLDH 760
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
T QL V+I GL L +++ R G S NLP I L + +
Sbjct: 761 T-------QLPDVIITDMHMPGMDGLELAGHIRE--RPG----SENLPLILLSSGFMP-- 805
Query: 1030 DRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089
+ L KP R + L S LQ K + K ILV DD
Sbjct: 806 --GGASAGPFNARLLKPARQNQLFEALARCLTSDSVLQS--IKAERVDIRKNVTILVADD 861
Query: 1090 NMVNRRVAEGALKKHGA-IVTCVD---CGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
N+VN +VA G L + G VT D A D + F A MDL MP MDG +AT
Sbjct: 862 NVVNLKVACGILARLGYDAVTAADGVQAVTAVADSMNSARRFGAILMDLHMPGMDGLEAT 921
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
I+ + FG+ PI+A+TAD E+C GMDDY++K
Sbjct: 922 QTIK-----------------KRFGHAA---PPIIALTADASIEDRERCEAAGMDDYLTK 961
Query: 1206 PFEDEQLYTAVARF 1219
P + +L A+AR+
Sbjct: 962 PLQVVELTRALARW 975
>gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio
brasiliensis LMG 20546]
gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio
brasiliensis LMG 20546]
Length = 1318
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 193/620 (31%), Positives = 299/620 (48%), Gaps = 107/620 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + K A+A AK +FLA +SHEIRTPMNG+LGM+ + ++TELD AQ Y + S
Sbjct: 592 ELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHLALNTELDPAQHKYLTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +KIE G+L E + F L +V DN+ ++ S KA +K IE + + +
Sbjct: 652 AKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFDNLTNVISLKAQEKKIEFLLDIDPQ 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP T L+G+ ++ Q V V+L + + + V+ +
Sbjct: 712 VP--------------TGLIGDPLRIGQ------VLVNLCGNAVKFTEQGEVVVAVRIEL 751
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ + + L +V+DTG+GI E
Sbjct: 752 LTERD------------------------------------VVLHFSVKDTGIGIDKEKI 775
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+F F QADSS +R +GGTG+GLSIS+ LVELMGG++ S G GSTF+FT+T
Sbjct: 776 AHLFDAFSQADSSITREFGGTGLGLSISKQLVELMGGQLSVSSTLGAGSTFAFTITCGLQ 835
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV-ANSMQLACS 965
E K + V+ G RALV+DD + R L L A+H A ++
Sbjct: 836 E-----AKMRDISKPVAGLAGKRALVVDDN----DSARNILVTLLNAMHFDAKAVSNGFE 886
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
L + ++ Q L+ +D W+ GL +L+ + + LE S+N FL+
Sbjct: 887 ALDEIRNS----QFDLLFVD---WNMP-GLNGIELLQTAQNEQLLEHSKN----FLVTAY 934
Query: 1026 ISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKG 1081
E D+ S + +L+ KP+ L ++ F + + + +KP G G
Sbjct: 935 GREISLDQASSKLVDSLIVKPVNPSNLLDAIMDSFGIEHVTRNTPANQLEKPVFG----G 990
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ IL+V+DN VN+ VA G LK V D G+ A++ L H D MD+QMP +DG
Sbjct: 991 QTILLVEDNEVNQEVAIGLLKGTNVNVLTADNGQQAINMLE-QHPVDLVLMDMQMPVLDG 1049
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
AT QIR N +PI+AMTA+ +Q+ ++C+ GM+
Sbjct: 1050 VSATEQIRR--------------------NPDWQQLPIIAMTANAMQSDVDRCIAAGMNS 1089
Query: 1202 YVSKPFEDEQLYTAVARFFM 1221
+++KP LY +++ +
Sbjct: 1090 HLAKPINVRNLYQTLSQHLL 1109
>gi|302037639|ref|YP_003797961.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300605703|emb|CBK42036.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 950
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 205/676 (30%), Positives = 318/676 (47%), Gaps = 122/676 (18%)
Query: 568 PVPWTAINASIGVVVITLLVGHIFHAAINRIA-QVENDYHEMMELKARAEAADVAKSQFL 626
PVP + + I L H H A+N A ++ ++ + +A+ A AKS FL
Sbjct: 232 PVPGHGL---VRAFAIDLSEVHATHRALNETADRLRESNRQLDQALQQAQTAARAKSSFL 288
Query: 627 ATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESG 686
A ++HE+RTPMNGV+GM +L++T L Q + T G+ +SLINDVL+ +KIE+G
Sbjct: 289 AMITHELRTPMNGVIGMASLLLETPLTEEQRSFTNTIQQCGEAQLSLINDVLECSKIEAG 348
Query: 687 RLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLV 746
+LE E + F+L +++VLS F+ +A +KG+E+ V VP + GDPGR RQ++TN V
Sbjct: 349 KLELEHLDFYLRTTVEDVLSQFAERAQRKGLEITGLVHAAVPNALRGDPGRLRQVLTNFV 408
Query: 747 GNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDR 806
GN+IKFT+ +G + + L D S+V +K +V + + S+ V + L
Sbjct: 409 GNAIKFTE-RGEVTLQAFLERDSPSEVIIKFEVTDSGIGI----SEDVQSRL-------- 455
Query: 807 WKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGG 866
++ F D++ T R YGG
Sbjct: 456 ---FQAFTQADSSTT----------------------------------------RKYGG 472
Query: 867 TGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFR 926
TG+GL+IS+ LVELMGG++G S+PG G+TF T F ++ P VP V E
Sbjct: 473 TGLGLAISKQLVELMGGQVGLRSQPGQGTTFWCTARFQ--KQAVCAPA---IVPSV-ELS 526
Query: 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDK 986
G R L++DD + + + M A A L + P A VL D
Sbjct: 527 GRRILIVDDNESNRTILHHLVSGWGMQDGQARHADEAILMLEQAAAQG-RPYDAAVL-DM 584
Query: 987 DVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKP 1046
+ K+ GL L ++ + G+ ++ +L + I + + G LTKP
Sbjct: 585 LMPGKD-GLQLAQEIRAHPQGAGV-------RLIVLTSLIQPGHAERARRAGFTAYLTKP 636
Query: 1047 LRLSVLIGCFQ-----EDPESSKK------------------LQQKRKKPSLGHLLKGKQ 1083
+R L GC + + P ++ L ++R +P +
Sbjct: 637 VRHDQLQGCLRVVFGLQGPATTNAPGVATGPTIVPTLITRHTLAEQRARP---------R 687
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
ILV +DN+VN+++A L + G V G+ AV + A MD QMP MDG++
Sbjct: 688 ILVAEDNVVNQKLAVRMLDRLGYQPDIVSNGQEAVAAFE-RGLYAAIVMDCQMPTMDGYE 746
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT +IR E + ASG + H+PI+A+TA+ + E+C GMDDY+
Sbjct: 747 ATRRIREQE---QKPAASGTRA----------HIPIIALTANAMPGDRERCKAAGMDDYL 793
Query: 1204 SKPFEDEQLYTAVARF 1219
SKP + + L + R+
Sbjct: 794 SKPVKTDDLGRLLQRW 809
>gi|376007484|ref|ZP_09784679.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
gi|375324120|emb|CCE20432.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
Length = 1493
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 205/685 (29%), Positives = 310/685 (45%), Gaps = 122/685 (17%)
Query: 581 VVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGV 640
V IT+ + + +E + E K AE A AKS+FLAT+SHEIRTPMN V
Sbjct: 691 VGITIAQAKLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAV 750
Query: 641 LGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700
+GM +L+D EL Q D+ +T SG L+++IND+LD +KIESG+LE E PF L +
Sbjct: 751 IGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNC 810
Query: 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIF 760
L+ L L S +A +KG+ELA + P+ ++GD R RQ++ NLV N+IKFT + G +
Sbjct: 811 LEECLELLSGRAAEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSE-GEVI 869
Query: 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTN 820
++V A +K DVK KSD T S +
Sbjct: 870 LAVK-ATHPDAKKDVK-------------KSDDSDFTESHY------------------- 896
Query: 821 TMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVEL 880
L V DTG+GIP + R+F F Q D+ST+R YGGTG+GL+IS+ L +L
Sbjct: 897 --------VLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQL 948
Query: 881 MGGEIGFVS----------------------------EPGT---GSTFSFTVTFTEGERN 909
M G++ S P GS F FT+ +
Sbjct: 949 MNGKMWVASWVNLLDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIVCSGFN-- 1006
Query: 910 SLDPKWQQYVPDVSEF-----RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
PD+ EF G + L+++ I ++ ++ M + A
Sbjct: 1007 ---------TPDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKTGADAL 1057
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
L D P L L+++ ++ D + L ++Q ++ R P ++
Sbjct: 1058 KVLHDN------PGLDLIILGINLPDMDEA-TLASRIRQLEKQMIAGKYRQKPFNLVMFN 1110
Query: 1025 SISETD---RDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKK----P 1073
S T+ R E + + L+ KPL+ S L+ F + K K + P
Sbjct: 1111 YASNTEVLRRLEAQGVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGYDP 1170
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
++ +IL+ +DN+ N++VA L++ G G +D L +D MD
Sbjct: 1171 AIPQPHANLRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALN-RQQYDVILMD 1229
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMPEMDG +A+ I A+ ++M G I+AMTA+ +Q E
Sbjct: 1230 VQMPEMDGLEASKHI----------CAAYSDGSDM----GPRKPRIIAMTANAMQGDREM 1275
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVAR 1218
C+ GMDDY++KP E L A+A+
Sbjct: 1276 CLNAGMDDYITKPVRREALAEALAK 1300
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 1073 PSLGHL----LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
P LG L GK++L+V+ + +N+++ +K G + V G A+ L D
Sbjct: 1008 PDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKTGADALKVLHDNPGLD 1067
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
+ + +P+MD +IR LE +Q+ +G+ + F V + A +V++
Sbjct: 1068 LIILGINLPDMDEATLASRIRQLE----KQMIAGKYRQKPFNLVMFNY----ASNTEVLR 1119
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
Q + V+KP + Q Y + + F
Sbjct: 1120 RLEAQGVNVA--GLVNKPLKQSQFYNTLMQIF 1149
>gi|421351118|ref|ZP_15801483.1| sensory box protein [Vibrio cholerae HE-25]
gi|395951563|gb|EJH62177.1| sensory box protein [Vibrio cholerae HE-25]
Length = 1331
Score = 251 bits (640), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 195/622 (31%), Positives = 291/622 (46%), Gaps = 115/622 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQCMKCG 1198
DG AT IR N + WH +PI+AMTA+ + E+C++ G
Sbjct: 1049 DGITATEHIR-----ANPR----------------WHSLPIVAMTANAMAIDIERCLQAG 1087
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
M+D++SKP E ++ Y + F
Sbjct: 1088 MNDHLSKPIEVDKFYQVLRHFL 1109
>gi|409992461|ref|ZP_11275649.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
gi|409936686|gb|EKN78162.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
Length = 1494
Score = 251 bits (640), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 202/685 (29%), Positives = 309/685 (45%), Gaps = 122/685 (17%)
Query: 581 VVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGV 640
V IT+ + + +E + E K AE A AKS+FLAT+SHEIRTPMN V
Sbjct: 691 VGITIAQAKLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAV 750
Query: 641 LGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700
+GM +L+D EL Q D+ +T SG L+++IND+LD +KIESG+LE E PF L +
Sbjct: 751 IGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNC 810
Query: 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIF 760
L+ L L S +A +KG+ELA + P+ ++GD R RQ++ NLV N+IKFT + G +
Sbjct: 811 LEECLELLSGRAAEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSE-GEVI 869
Query: 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTN 820
++V A +K DVK D+++
Sbjct: 870 LAVK-ATHPDAKKDVKK--------------------------------------FDDSD 890
Query: 821 TMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVEL 880
E L V DTG+GIP + R+F F Q D+ST+R YGGTG+GL+IS+ L +L
Sbjct: 891 FTE--SHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQL 948
Query: 881 MGGEIGFVS----------------------------EPGT---GSTFSFTVTFTEGERN 909
M G++ S P GS F FT+ +
Sbjct: 949 MNGKMWVASWVNLLDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIVCSGFN-- 1006
Query: 910 SLDPKWQQYVPDVSEF-----RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
PD+ EF G + L+++ I ++ ++ M + A
Sbjct: 1007 ---------TPDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKTGADAL 1057
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
L D P+L L+++ ++ D + L ++Q ++ R P ++
Sbjct: 1058 KVLHDN------PELDLIILGINLPDMDEA-TLASRIRQLEKQMIAGKYRQKPFNLVMFN 1110
Query: 1025 SISETD---RDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKK----P 1073
S TD R E + + L+ KPL+ S L+ F + K K + P
Sbjct: 1111 YASNTDSLRRLEAQGVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGYDP 1170
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
++ +IL+ +DN+ N++VA L++ G G +D L +D MD
Sbjct: 1171 AIPQPHANLRILLAEDNVTNQKVAIKLLERLGYRADIAGNGLEVLDALN-RQQYDVILMD 1229
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMPEMDG E ++ I + S ++G I+AMTA+ +Q E
Sbjct: 1230 VQMPEMDGL-----------ETSKHICAAYSDG---SDMGPRKPRIIAMTANAMQGDREM 1275
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVAR 1218
C+ GMDDY++KP E L A+A+
Sbjct: 1276 CLNAGMDDYITKPVRREALAEALAK 1300
>gi|344339667|ref|ZP_08770595.1| multi-sensor hybrid histidine kinase [Thiocapsa marina 5811]
gi|343800403|gb|EGV18349.1| multi-sensor hybrid histidine kinase [Thiocapsa marina 5811]
Length = 1717
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 193/613 (31%), Positives = 291/613 (47%), Gaps = 105/613 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
+ +AEAA +KS+FLA +SHEIRTPMN V+G+ Q+L+ T+L+ Q DY H S + L+
Sbjct: 1179 REQAEAASRSKSEFLANMSHEIRTPMNAVIGLSQILLGTDLNDEQRDYLGKIHGSSRLLL 1238
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+IND+LD +KIE+G+L+ E PF + ++LD + +LF S A +KG+EL VS VP
Sbjct: 1239 GIINDILDYSKIEAGKLDLESRPFRMDELLDQMATLFGSAAGEKGLELVFRVSPDVPR-- 1296
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
L+G++++ Q V +L +L + +
Sbjct: 1297 ------------TLLGDALRLGQ--------------------VLTNLLANALKFTEQGT 1324
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
++ G ++KL V DTG+G+ E R+F
Sbjct: 1325 VEIRIARLG----------------------GDTAQVKLRFEVADTGIGMDTEQIDRLFQ 1362
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QADSST+R YGGTG+GL ISR LVE MGG + S P GS FSF + +S
Sbjct: 1363 AFSQADSSTTRKYGGTGLGLVISRKLVERMGGRLTVASAPEAGSVFSFDLLLPVSREDS- 1421
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+P+ D+ + G R LV+DD ++ V R LQ V A S A + +
Sbjct: 1422 EPR------DLRKIAGARVLVVDDHAVSRTVLREILQSWRCRVDEAASGAAAVQAVIEAE 1475
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
+L+D + GL L + R++G L + P I +S +R
Sbjct: 1476 RAGR--PFDFILMDWKMPGDLDGLEATRQLFRLRKEGRLTGAET-PAII-----VSGYNR 1527
Query: 1032 DELKSD--GIVTLLTKPLRLSVLIGCF----QEDPESSKKLQQKRKK-PSLGHLLKGKQI 1084
D+L + G+ L KP+ S L+ E P + R PS G I
Sbjct: 1528 DDLPKERSGLSGFLGKPVTASALLDTLLEAHGEKPHPGRTAPTARAPIPS----FTGAAI 1583
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+V+DN +N+ VA+ L++ GA+VT + G AV L +FD MDLQMP MDGF+A
Sbjct: 1584 LLVEDNALNQEVAKRMLQRTGAVVTLAENGIEAV-ALATTQDFDLVLMDLQMPMMDGFEA 1642
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T +IR ++ PI+A++A V++ + GM+ +++
Sbjct: 1643 TRRIRPQRPDL----------------------PIIALSAAVMEIDRNGAREAGMNGHLA 1680
Query: 1205 KPFEDEQLYTAVA 1217
KP + +LY +A
Sbjct: 1681 KPIDTVELYRTLA 1693
>gi|383777032|ref|YP_005461598.1| putative multi-sensor signal transduction histidine kinase
[Actinoplanes missouriensis 431]
gi|381370264|dbj|BAL87082.1| putative multi-sensor signal transduction histidine kinase
[Actinoplanes missouriensis 431]
Length = 1072
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 194/624 (31%), Positives = 279/624 (44%), Gaps = 107/624 (17%)
Query: 591 FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
FH + I + E + +A KSQFLA++SHEIRTPMNGV+G+ +L+ +
Sbjct: 400 FHGFVRDITARRQTEQALAEARDQAIETARLKSQFLASMSHEIRTPMNGVIGLTGLLLGS 459
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
+LD Q YA+ +G L+++INDVLD +K+E+G++ E F + ++D+V+SL +
Sbjct: 460 DLDEKQRRYAEGISAAGTTLLAVINDVLDFSKLEAGKVLLEEANFQIGRLIDDVVSLVAP 519
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
+ + + R+PE V GDP + RQ++ NL GN++KFT + G + V+ L +
Sbjct: 520 PGTRDAVTVGGVCDPRLPETVCGDPTKLRQVLLNLAGNAVKFTTE-GRVTVTAALDEGQS 578
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKL 830
+ D P+ F++ D
Sbjct: 579 TGPDA-------------------------VPI--------RFEVRD------------- 592
Query: 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
TG+GI E Q +F F QAD+ T+R +GGTG+GL+ISR LVELMGG IG SE
Sbjct: 593 ------TGIGIDGERQEELFEAFTQADAGTTRRFGGTGLGLAISRDLVELMGGSIGVESE 646
Query: 891 PGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRL 950
PG GS F FTVT R+ LD + + GLR L++D V L
Sbjct: 647 PGHGSMFWFTVTLRTA-RDDLD------LTERHSLDGLRVLIVDRDEQDRNVLTDQLTGW 699
Query: 951 EMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL 1010
M A+ + A + L + + + LV++D + + GL L G
Sbjct: 700 SMRAGTASDVPGAQTALREAAAAGR--PIDLVIVDIGTAEAD-GLDL----------AGF 746
Query: 1011 EISR---NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESS 1063
I+ PK+ LLA E + KPLR S L+G D
Sbjct: 747 AIAPPGCPPPKMILLADEAHHLP-GEPDPESFSAAFAKPLRQSQLYDALVGVLTGDTGEP 805
Query: 1064 KKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP 1123
GHL L+V+DN +NR VA G L G G AV L
Sbjct: 806 AAGAAGETPTGRGHL------LLVEDNDINRTVALGVLANLGYSADVAVNGLEAV-ALAT 858
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
+ A FMD MPEMDG+ AT +IR E E HVPI+A+T
Sbjct: 859 RREYRAIFMDCLMPEMDGYAATAEIRRREPEGR-------------------HVPIIALT 899
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPF 1207
A + +C+ GMD +++KP
Sbjct: 900 ASALAEDRARCLAAGMDAHIAKPL 923
>gi|350532413|ref|ZP_08911354.1| hybrid sensory histidine kinase BarA [Vibrio rotiferianus DAT722]
Length = 932
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 183/601 (30%), Positives = 289/601 (48%), Gaps = 104/601 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L +Q DY QT S +L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +K+E+G+L E +PF + L+ V++L ++ A++KG+E+ + V ++P+ +
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGL 400
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +QI+TNLVGNSIKFT+ R +D+ ++ +S +SV+
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTE---------------RGNIDISVEMRSQSGDSVE--- 442
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
L V DTG+GI Q ++F
Sbjct: 443 --------------------------------------LQFMVRDTGIGISERQQAQLFQ 464
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF FT+ + E
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLSSTEMPMS 524
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
D + +V G + L+++ A VT+ L + + V +S+ +D
Sbjct: 525 D------LIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRSSLP-----ENDEN 573
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
VL LA +D++ + ++Q +R P + + S
Sbjct: 574 YDYVLLNLAA----NQTYDEQ---SVATWIEQAKRMA--------PSVIMGTPSTELALA 618
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNM 1091
D++ +D + LTKPL L+ D + + +P L +L VDDN
Sbjct: 619 DQVMNDHQIQCLTKPLSRRKLLQSLITDHVETPQAVIAPIEPVENERLP-LTVLAVDDNP 677
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
N ++ LK+ VT G+ AV+ L +D FMD+QMP MDG A I+ L
Sbjct: 678 ANLKLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQHIKEL 736
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
E+N+ P++A+TA + ++ + GMDDY++KP E+
Sbjct: 737 --ELNKD------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHV 776
Query: 1212 L 1212
L
Sbjct: 777 L 777
>gi|320155329|ref|YP_004187708.1| BarA sensory histidine kinase ( VarS GacS) [Vibrio vulnificus
MO6-24/O]
gi|319930641|gb|ADV85505.1| BarA sensory histidine kinase (VarS GacS) [Vibrio vulnificus
MO6-24/O]
Length = 928
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 199/670 (29%), Positives = 306/670 (45%), Gaps = 121/670 (18%)
Query: 552 DPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMME- 610
D R+ ++ R + K ++ I + I+L H+ + I Q +D E +E
Sbjct: 212 DRIRRGQLDVRIEGKMHGELDSLKNGINAMAISLSEYHV--EMQHSIDQATSDLRETLEQ 269
Query: 611 ----------LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L +Q DY
Sbjct: 270 LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQTDYL 329
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
QT S +L+++IND+LD +K+E+G+L E +PF + L+ V+SL ++ A++KG+E+
Sbjct: 330 QTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEIT 389
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
+ + R+PE V+GDP R +Q++TNLVGNSIKFT+ R +DV ++
Sbjct: 390 LKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTE---------------RGNIDVSVEMR 434
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
+S +S + L V+DTG+G
Sbjct: 435 AQSGDS-----------------------------------------LDLQFMVKDTGIG 453
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
I Q ++F F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF FT
Sbjct: 454 ISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFT 513
Query: 901 VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
+ + D +Y +G L+++ A VT+ L + + V
Sbjct: 514 LRLHSTQMPMSDSIEAEY------LQGKELLLVEPNMQAAAVTQQVLTQEGINVTYR--- 564
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
S L D L+L + V++ E + +++ + L IS N
Sbjct: 565 ----SLLPDNAKGYDFVLLSLAV--NQVYELET--IENWLSR------ALHISAN---TI 607
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK 1080
L S D+L + LTKPL L+ + + LQ P +
Sbjct: 608 LAIPSTELALADQLTERFGIQCLTKPLGRRKLLQSLA----AKQTLQPLLPAPENAQAER 663
Query: 1081 GK-QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
+L VDDN N ++ L + VT G+ AVD T FD FMD+QMP+M
Sbjct: 664 SSLSVLAVDDNPANLKLITALLAERVVSVTSCSSGQDAVDIATS-RQFDLIFMDIQMPKM 722
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG A I+ E N P++A+TA + ++ +K GM
Sbjct: 723 DGVTACKLIKQTELNAN--------------------TPVIAVTAHAMSGERDRLLKAGM 762
Query: 1200 DDYVSKPFED 1209
DDY++KP E+
Sbjct: 763 DDYLTKPIEE 772
>gi|86144789|ref|ZP_01063121.1| hypothetical two-component sensor [Vibrio sp. MED222]
gi|85837688|gb|EAQ55800.1| hypothetical two-component sensor [Vibrio sp. MED222]
Length = 808
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 208/715 (29%), Positives = 320/715 (44%), Gaps = 155/715 (21%)
Query: 560 HCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAAD 619
H + + P T N++ + TL ++ +I RI Q Y E+ + K AE A+
Sbjct: 186 HQQVEDNKPRFLTPTNSTYSDEISTL--ESSYNQSIERIRQ---QYQELEKAKDTAEVAN 240
Query: 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLD 679
KS+FLA +SHEIRTPMNG++G+ +L + ++ Q +Y + S L+ LIND+LD
Sbjct: 241 RNKSEFLANMSHEIRTPMNGIIGLSSLLSEMDMPKEQKEYVDMLNTSSLTLLDLINDILD 300
Query: 680 QAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFR 739
+KIE+GRLE + P + + +V S F KA QKG++ + + ++P +VIGD + R
Sbjct: 301 YSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLKFQLAIDPKIPTMVIGDGTQLR 360
Query: 740 QIITNLVGNSIKFTQDKGHIFVSVHLADDV--RSKVDVKDKVLEKSLNSVQHKSDKVYNT 797
Q++ NLVGN+IKFT+ GH+ +S+ L + + K+ VK +V + + + K V++
Sbjct: 361 QVLNNLVGNAIKFTE-HGHVMLSLRLEEVIEPEQKLRVKFEVTDSGIGIAEDKQQSVFD- 418
Query: 798 LSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
F+ D +
Sbjct: 419 --------------KFQQADGS-------------------------------------- 426
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQ 917
T+R YGGTG+GL+I +V LMG ++ S G GSTF FT F DP
Sbjct: 427 --TTRIYGGTGLGLTICDKIVTLMGSKLELTSVVGKGSTFYFTADF--------DPSL-- 474
Query: 918 YVPDVSE----FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
DV E F + L++DD + +T LQ + + A +S++ +
Sbjct: 475 ---DVDESNIDFNKVSVLLVDDSQLNMRITSTQLQSFGVKSECCETATQALELVSESVAK 531
Query: 974 SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
S LP LVLIDK V G L L ++ K PK+ +++ + D
Sbjct: 532 S-LP-YDLVLIDK-VMPSIDGFQLARSLIERFDKA-------CPKLVMISADPRKQDEAR 581
Query: 1034 LKSDGIVTLLTKPLR-------LSVLIG----------------CFQED-------PESS 1063
K G V + +P + LS ++ F+++ P S
Sbjct: 582 AKQVGFVAYIARPYQDNQLKWTLSEVLARSADTSIFTYPNRGEVAFKDNQPVPLTKPSGS 641
Query: 1064 ---------------KKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIV 1108
K+ K + + GK +LVV+D+ VN++VA+ LKK G V
Sbjct: 642 VEATTSASVRTTQIDKQAPIKEEPKPVAAPFSGK-VLVVEDSRVNQQVAKMMLKKLGFEV 700
Query: 1109 TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEM 1168
D G V+K + ++ FMD QMP +DGF+AT QIR LE G S
Sbjct: 701 DIADNGEIGVEKFQ-ANEYEMIFMDCQMPVLDGFEATKQIRALEE--------GTSK--- 748
Query: 1169 FGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
H+PI+A+TA+V+Q C GMD+++ KP +L VA F G
Sbjct: 749 -------HIPIVALTANVVQRDKHLCFDVGMDEFLPKPVNQGKLREIVASFLSKG 796
>gi|23016213|ref|ZP_00055971.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 788
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 189/638 (29%), Positives = 293/638 (45%), Gaps = 100/638 (15%)
Query: 591 FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
+ A I V+ + K AE A AKS FLA +SHEIRTPMN ++GM + + T
Sbjct: 26 MYGAYQDITAVKAAEDAIRAAKEIAEEATKAKSDFLANMSHEIRTPMNAIIGMSHLALQT 85
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
+LD Q +Y + H SG++L+ +IND+LD +KIE+G++ E + F L DV+DN+ +L
Sbjct: 86 KLDKKQRNYIEKVHRSGENLLGIINDILDFSKIEAGKMTMESIDFRLEDVMDNLANLVGL 145
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
KA +G+EL V+ +P +IGDP R QI+ NL N++KFT+ KG I V L +
Sbjct: 146 KAEDRGLELLFNVAPDIPSALIGDPLRLGQILINLGNNAVKFTE-KGEIIVGAELVERSE 204
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKL 830
+ ++ V + + + K++ + F D + T
Sbjct: 205 DQAELHFWVRDSGIGMTPEQCGKMFKS---------------FSQADTSTT--------- 240
Query: 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
R YGGTG+GL+IS+ LVELM G I SE
Sbjct: 241 -------------------------------RKYGGTGLGLAISKTLVELMDGRIWVESE 269
Query: 891 PGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRL 950
G GSTF F V S P + + PD E GLR LV+DD + E+ +
Sbjct: 270 AGKGSTFHFHVRVG---VQSHPPLRRVFSPD--ELLGLRVLVVDDNAAAREILSAMAKGF 324
Query: 951 EMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL 1010
+ V A A ++ LP L+L+D W I + + K Q
Sbjct: 325 GLEVDSAWDGTQALEMVA-AAERKDLP-YDLILMD---WKMPIMDGVETVQKLQHGD--- 376
Query: 1011 EISRNLPKIFLLATSISETDRDELKSDGIV--TLLTKPLRLSVLIGCFQED------PES 1062
+P + ++ E + G+V T+LTKP+ + L+ E E
Sbjct: 377 --HARIPAVIMVTAYGREEAATNAEERGVVMKTVLTKPVTAASLLEAIGETLGKGVVAEH 434
Query: 1063 SKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
+ + + K ++ L+G ++L+V+DN +N+ +A L + G V G+ A+D L
Sbjct: 435 QGQDKAESYKETM-KALEGCRVLLVEDNEMNQELATELLSQAGMEVVVAVHGQDALDILA 493
Query: 1123 PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAM 1182
+ FD MD QMP MDG+ AT IR N L +P++AM
Sbjct: 494 RDNRFDGILMDCQMPVMDGYTATRAIR--------------------ANPALSAIPVIAM 533
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
TA+ + E+ M+ GM D+++KP E +++ +A++
Sbjct: 534 TANAMAGDREKVMEAGMLDHIAKPLNLETMFSTMAKWI 571
>gi|444426173|ref|ZP_21221597.1| hybrid sensory histidine kinase BarA [Vibrio campbellii CAIM 519 =
NBRC 15631]
gi|444240586|gb|ELU52124.1| hybrid sensory histidine kinase BarA [Vibrio campbellii CAIM 519 =
NBRC 15631]
Length = 932
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 183/601 (30%), Positives = 289/601 (48%), Gaps = 104/601 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L +Q DY QT S +L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 340
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +K+E+G+L E +PF + L+ V++L ++ A++KG+E+ + V ++P+ +
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLKVDPKIPQGL 400
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +QI+TNLVGNSIKFT+ R +D+ ++ +S +SV+
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTE---------------RGNIDISVEMRSQSGDSVE--- 442
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
L V DTG+GI Q ++F
Sbjct: 443 --------------------------------------LQFMVRDTGIGISERQQAQLFQ 464
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF FTV E
Sbjct: 465 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRLHSTEMPMS 524
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
D + +V G + L+++ A VT+ L + + V +S+ +D
Sbjct: 525 D------LIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRSSLP-----ENDEN 573
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
VL LA ++ D+ + ++Q +R P + + S
Sbjct: 574 YDYVLLNLA---ANQTYDDQSVA----AWIEQAKRMA--------PSVIMGTPSTELALA 618
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNM 1091
D++ +D + LTKPL L+ D + + +P + L +L VDDN
Sbjct: 619 DQVMNDHQIQCLTKPLSRRKLLQSLITDHVETPQAVIAPIEPVVNERLP-LTVLAVDDNP 677
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
N ++ L++ VT G+ AV+ L +D FMD+QMP MDG A I+ L
Sbjct: 678 ANLKLISALLRERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQHIKEL 736
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
E+N+ P++A+TA + ++ + GMDDY++KP E+
Sbjct: 737 --ELNKD------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHV 776
Query: 1212 L 1212
L
Sbjct: 777 L 777
>gi|374334750|ref|YP_005091437.1| hybrid sensory histidine kinase BarA [Oceanimonas sp. GK1]
gi|372984437|gb|AEY00687.1| hybrid sensory histidine kinase BarA [Oceanimonas sp. GK1]
Length = 898
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 195/633 (30%), Positives = 297/633 (46%), Gaps = 129/633 (20%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A K++FLA +SHE+RTP+NGV+G + L T+L A QL
Sbjct: 266 LEQIEIQNIELDMAKKRAQEAARVKTEFLANMSHELRTPLNGVIGFARQLQKTKLTANQL 325
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY +T S ++L+ +IND+LD +K+E+G+L+ E +PF L D L V++L + A+ KG+
Sbjct: 326 DYLKTIEKSAQNLLGIINDILDFSKLEAGKLKMEQIPFSLRDTLQEVMTLLAPSAHDKGL 385
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL++ V V + ++GDP R +Q++ NLVGN+IKFT+ +G++ DVR VD +
Sbjct: 386 ELSLRVDAAVHDSLVGDPLRLQQVLNNLVGNAIKFTE-QGNV--------DVR--VDARP 434
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+G P R L + V+DT
Sbjct: 435 ---------------------AGQP-----------------------ERSGLCIHVQDT 450
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI + ++F F QADSS SR YGGTG+GL I++ LV M G+I SEPG+GS F
Sbjct: 451 GIGISDSQRRQLFQAFNQADSSISRRYGGTGLGLVITQKLVHQMAGDIELYSEPGSGSVF 510
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
SFT+ + +P +P ++E G L ++ T L+ M V
Sbjct: 511 SFTLELDKAALPLAEP-----LP-LAELAGKTVLYQEEDGFSRRATSALLREWGMQVLYE 564
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
S + +AL +G H + Q + E+ R L
Sbjct: 565 PSPEQPVD-------------VAL-----------LGFGPHALPSQVEQ----ELKRQLA 596
Query: 1018 ---KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE------DPESSKKLQQ 1068
K +L +S T D L + G L+KP L E +P + L
Sbjct: 597 FDNKTIILLSSTDPTLSDSLLAVGAAHCLSKPAHYQKLAQALTEQRRPVDEPVAPIALPP 656
Query: 1069 KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD--KLTPPHN 1126
+ + ++L VDDN N ++ L + V+ VD GR + L H
Sbjct: 657 PASRQPM-------RVLAVDDNPANLKLISAMLAEQ---VSQVDTGRNGREALNLATTHR 706
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
+D FMD+QMP +DG QAT +IR + +N H PI+A+TA
Sbjct: 707 YDIIFMDIQMPVLDGIQATQEIRR-QGGLN------------------VHTPIVAVTAHA 747
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
I ++ ++ GMDDY++KP ++ L + F
Sbjct: 748 IAGERDRLLRQGMDDYLAKPIDEAILARIINHF 780
>gi|300718124|ref|YP_003742927.1| Signal transduction histidine-protein kinase [Erwinia billingiae
Eb661]
gi|299063960|emb|CAX61080.1| Signal transduction histidine-protein kinase [Erwinia billingiae
Eb661]
Length = 908
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 195/625 (31%), Positives = 290/625 (46%), Gaps = 115/625 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNITQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY T S +L+S+INDVLD +K+E+G+L E +PF L D LD V+ L + A++KG+
Sbjct: 329 DYLHTIERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRDTLDEVVVLLAQSAHEKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ IGDP R +QII NL+GN+IKFT+ R +D++
Sbjct: 389 ELTLSIQPEVPDNTIGDPLRLQQIIINLLGNAIKFTE---------------RGNIDIRI 433
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++ S N V L V + DT
Sbjct: 434 ELRSLSTNRV-----------------------------------------NLEVQIHDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI + Q ++F F QAD+S SR +GGTG+GL I++ LV MGGEI S GSTF
Sbjct: 453 GIGISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISLHSRMNQGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + +L+P G R ++ S A+ T LEM A
Sbjct: 513 WFNINL------ALNPNANSDRRATDCLIGKRLAYVEANSAAAKAT------LEML--GA 558
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
M ++ S D L L L D+EI L +L +R L ++ LP
Sbjct: 559 TQMNISYSTTLDGLPDGHFDALLLGLPVTKQADREISAEL--LLPALKRADNLIMA--LP 614
Query: 1018 ---KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
+I+ +ELKS G+ L KP+ L+ L+ E+ R +
Sbjct: 615 CQMQIY----------AEELKSRGVNACLIKPVSLTRLLPVLIENHTREAVYLPARLRLP 664
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
L ++ VDDN N ++ L++ + D G AA+ K N D MD+
Sbjct: 665 L-------TVMAVDDNPANLKLIGALLEEQVENIVLCDSGEAAI-KQAQQRNLDIILMDI 716
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP++DG +A+ IR Q AS PI+A+TA + E
Sbjct: 717 QMPDIDGIRASEIIRSY-----SQHAS---------------TPIVAVTAHALDGEKEHL 756
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARF 1219
++ GM+DY++KP ++ +L +AR+
Sbjct: 757 IEAGMNDYLAKPIDEAKLSQLLARY 781
>gi|13473249|ref|NP_104816.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
gi|14023997|dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
Length = 786
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 193/643 (30%), Positives = 292/643 (45%), Gaps = 132/643 (20%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L TEL Q + SG L+++
Sbjct: 231 KAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTELTPRQKTFTDVIVKSGNALLTI 290
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IND+LD +KI +G+L + PF L + +++V +L S++ +K +EL + V R+P V+G
Sbjct: 291 INDILDFSKINAGQLTLDPAPFRLTEAVEDVATLVSARVAEKNLELIVRVDPRLPAHVVG 350
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
D GRFRQI+TNLVGN++KFT+ KGH+ + V +++N V +
Sbjct: 351 DAGRFRQIVTNLVGNAVKFTE-KGHVLIDVG----------------GETVNDVVQLRLR 393
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
V +T G P +E F +D ++T
Sbjct: 394 VEDTGIGIPAEKLQNVFEKFAQVDGSST-------------------------------- 421
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
R + GTG+GL+I+ LV+LM G+IG SE G GS F F V +
Sbjct: 422 --------RRHEGTGLGLAIAARLVDLMAGKIGVESEIGRGSVFWFAVPLPVHHAEA--- 470
Query: 914 KWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCS 972
+ VP DV+ G R LVIDD + E+ L+ A S + ++L C
Sbjct: 471 -REAIVPVDVT---GARVLVIDDNPVNREILLEQLRSWSFDCAAAESGAVGLAFLDRACQ 526
Query: 973 TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
+ +++D + V + R +P + L TS+ + D
Sbjct: 527 LGA--SVDCIILDYQMPGMNGADVARAIAADSRLSA-------IPIVIL--TSVDQVDFG 575
Query: 1033 ELKSD-GIVTLLTKPLRLSVLIGC----------------FQEDPESSKKLQQKRKKPSL 1075
++ D GI LTKP R +VL+G F +P K + Q P
Sbjct: 576 KMIIDFGISAHLTKPARSAVLLGTVISVIQKARSQGGKAQFIREPVQPKPVPQ--AAPPA 633
Query: 1076 GHLLKGK------------------QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
+++G IL+ +DN VN+ V L G GR A
Sbjct: 634 FTVIRGPAVPVMAVPESTAMPNGPIDILIAEDNEVNQLVFGQILNGLGLSYRIAGNGRTA 693
Query: 1118 VDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177
V+ H MD+ MPEM+G++AT IR +E +SG H+
Sbjct: 694 VEMYRSLHP-KLILMDVSMPEMNGYEATRAIRAIET------SSG------------GHI 734
Query: 1178 PILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
PI+ +TA ++ ++C++ GMDDY+ KP ++L T + +
Sbjct: 735 PIIGVTAHALKGDRDKCIEAGMDDYLPKPVSPDRLGTKIGTWL 777
>gi|319781457|ref|YP_004140933.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317167345|gb|ADV10883.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 763
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 190/641 (29%), Positives = 292/641 (45%), Gaps = 116/641 (18%)
Query: 588 GHIFHAAINR-IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQM 646
G + H AI R I + ++ + RAE A AKS+FLATVSHEIRTPMNG++GM ++
Sbjct: 220 GAVSHRAIARDITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARL 279
Query: 647 LMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLS 706
L DT L Q Y S L++LI D+LD +KIE+GR +PE P + ++ DN++
Sbjct: 280 LADTSLSPEQQTYVGAVSTSASALLALIEDLLDYSKIEAGRFDPEPQPMSVREIADNIIE 339
Query: 707 LFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766
L +++A K I L +V VP+++ DPG+ RQ++ NL+GN+IKFT D G + VS+
Sbjct: 340 LLAARAFAKDIGLGCHVEPDVPQLITADPGKVRQVLLNLIGNAIKFT-DSGGVLVSI--- 395
Query: 767 DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG 826
R++ + D++ + +T G D + +E F+ D T+T
Sbjct: 396 --ARARTETSDRICF-----------TIADTGPGLHDADLERIFEEFEQADGTST----- 437
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
RT+GG G+GL+ISR LV MGG I
Sbjct: 438 -----------------------------------RTHGGAGLGLAISRRLVAAMGGTIS 462
Query: 887 FVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH 946
S G GS F F V T P+ +Q + G R +++ ++ A+
Sbjct: 463 VSSRLGQGSEFVFEVPATAATEA---PQGRQ-----NALSGRRVVILSKNAVEADAIART 514
Query: 947 LQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006
++ AV +A + A + + C +L+D + + + +LK+ R+
Sbjct: 515 IRANGGAVDIATTAAQAAPFAAG-CDA--------ILVDAAMEEGD-----GRLLKRLRQ 560
Query: 1007 KGGLEISRNLPKIFLLATSISETDR---DELKSDGIVTLLTKPLRLSVLIGCF--QEDPE 1061
G + T I+ TDR E ++ G T L +P+R L+ P
Sbjct: 561 SGFSDCE--------AITLIAPTDRGMLGEFRASGYATFLARPVRGGTLLRVLLSSHAPS 612
Query: 1062 SSKKLQQKRKKPSL---GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
+KR P+L G+ +G +L+ +DN +N +A L K G V V G+AAV
Sbjct: 613 LGPPQPEKRGAPTLRAVGNRQRGLSVLIAEDNDINAMLARATLLKAGHRVRVVGNGKAAV 672
Query: 1119 DKLTPPHN---FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
+ +T + FD MDL MP MDG A IR E E +
Sbjct: 673 EAVTGAGHKDRFDVVLMDLHMPVMDGLDAIAAIRRHEEE-----------------SAVR 715
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
VPI+ ++AD + + + G +V+KP + E L AV
Sbjct: 716 PVPIMVLSADSQEKTRHAVLAHGASGFVTKPLDPEALVNAV 756
>gi|325108197|ref|YP_004269265.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
gi|324968465|gb|ADY59243.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
Length = 1434
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 199/611 (32%), Positives = 295/611 (48%), Gaps = 100/611 (16%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AEAA AKS FLA++SHE+RTP+NGV+GM ++L +T+LDA Q + + +SG+ L++LI
Sbjct: 709 AEAASKAKSDFLASMSHELRTPLNGVIGMTELLANTDLDARQTQFVRACKSSGESLLALI 768
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
NDVLD +KIE+GRLE + F L +LD+++++ + + K I++ V ++ GD
Sbjct: 769 NDVLDFSKIEAGRLELDEHEFDLMSLLDDLMNVMGLRVSGKDIQMLYRVDHPHTLLLRGD 828
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQ++ NL+GN+IKFT+ R K+ ++ + LE + +
Sbjct: 829 SHRLRQVLVNLIGNAIKFTE---------------RGKISLRVEPLELTED--------- 864
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
R KL V+DTG+GIP + R+F F
Sbjct: 865 --------------------------------RAKLRFAVKDTGIGIPADRLDRLFKTFT 892
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
Q DSS +RT+GGTG+GL I + LVE MGGE+G S G GS F FT+ T R D
Sbjct: 893 QVDSSITRTFGGTGLGLCICKSLVEAMGGEMGVDSIQGVGSEFYFTLELT---RVPADAS 949
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
PD + L L++ S + + M V A++ A S +S +T
Sbjct: 950 RPMITPD--QLPRLAVLLVGQNSEYCRFLQDVFESWSMQVETADNTLEAESAMSKALATQ 1007
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL 1034
P L+L D +++ Q+ R+ L ++P +FL+ E D +
Sbjct: 1008 K-PFDLLILPGNDQAEED-------DFTQRLREHPL--IGDVP-VFLMV----EADDELA 1052
Query: 1035 KSDGIVT-LLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKG--KQ----ILVV 1087
G+ LL KP+ S L+ + ++ + + + G + + KQ +L+V
Sbjct: 1053 PHPGLYQHLLRKPVGQSHLLNAIVDTFCQNESGEDNTSEDADGAITRDVPKQRALNVLLV 1112
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN NR + + G G V+ + FD MD QMPEMDGF AT Q
Sbjct: 1113 EDNETNRLFGKEIAHRQGWNCELAVNGVEGVEAVERGQ-FDVILMDCQMPEMDGFTATRQ 1171
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR ES ++ G VPI+A+TA+ I+ E C+ GMDDYVSKPF
Sbjct: 1172 IRQR-----------ESLGQISG-----RVPIIALTANAIRGDREACIAAGMDDYVSKPF 1215
Query: 1208 EDEQLYTAVAR 1218
QL AV R
Sbjct: 1216 TPAQLVEAVER 1226
>gi|430748007|ref|YP_007207136.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
gi|430019727|gb|AGA31441.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
Length = 1098
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 193/618 (31%), Positives = 289/618 (46%), Gaps = 104/618 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A AKS FLAT+SHEIRTPMN ++GM ++ +DT+L Q Y + S + L+
Sbjct: 430 KDAAEQATQAKSTFLATMSHEIRTPMNAIIGMTELTLDTDLTPEQRQYLELVKESSESLL 489
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+LIND+LD +KIE+G+L+ E + F LH+ L N + + +A++K +ELA +++ VPE +
Sbjct: 490 TLINDILDLSKIEAGKLDLESIDFSLHESLGNTMKALALRAHKKRLELAYHIAPDVPETL 549
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDPGR RQI+ NLVGN+IKFT+ G + V V +V + +V + + + +
Sbjct: 550 VGDPGRLRQIVVNLVGNAIKFTE-HGEVVVHVEKESQTADEVCLHFRVTDTGVGIPRERQ 608
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
D +++ F D++ T
Sbjct: 609 DLIFDA---------------FIQADSSTT------------------------------ 623
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
R YGGTG+GL+IS L+ LM G + SE G GSTF FT+ G R +
Sbjct: 624 ----------RQYGGTGLGLTISSRLIALMRGRVWVESEAGQGSTFHFTMRL--GVRKA- 670
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
P + + L LV+DD + + L + M A + +
Sbjct: 671 -PGITRDSAGSTLVDNLPVLVVDDNATNRLILEEILTKWRMRPKAVADGPSALAEMKRAA 729
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
+ ALVL D + + G L +K E++R+ + +L+++ D
Sbjct: 730 AAG--DPYALVLADAMMPGMD-GFTLLEQIKAHP-----ELARS--TLMMLSSADQSGDV 779
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESS------KKLQQKRKKPSLGHL---LKGK 1082
D + G+ L KP++ S L+ +S L + + G L +G
Sbjct: 780 DRCRRMGVNAYLVKPIKRSELLDAIVTSLGTSGVADGRGDLANRVSRLEPGDLPAPSRGL 839
Query: 1083 QILVVDDNMVNRRVAEGALKKHG--AIVTCVDC-GRAAVDKLTPPHNFDACFMDLQMPEM 1139
+IL+V+DN VN+ +A L+K G IV C G AA +K FD MD+QMPEM
Sbjct: 840 RILLVEDNPVNQTLATILLEKRGHKVIVACNGKEGLAAWEK----QEFDLILMDVQMPEM 895
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG + T IR E H+PI+AMTA I+ E C++ GM
Sbjct: 896 DGLEVTACIRARERGTGR------------------HIPIVAMTAHAIKGDREHCLQAGM 937
Query: 1200 DDYVSKPFEDEQLYTAVA 1217
D YVSKP E L+ A+A
Sbjct: 938 DGYVSKPIEVGDLFRAIA 955
>gi|417824412|ref|ZP_12471003.1| sensory box protein [Vibrio cholerae HE48]
gi|340048097|gb|EGR09020.1| sensory box protein [Vibrio cholerae HE48]
Length = 1331
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 194/621 (31%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + D S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLDGENSKLVDALIVKPVNPSNLLDAI----VTSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1089 NDHLSKPIEVDKFYQVLRHFL 1109
>gi|238750558|ref|ZP_04612058.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
ATCC 43380]
gi|238711206|gb|EEQ03424.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
ATCC 43380]
Length = 891
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 195/629 (31%), Positives = 305/629 (48%), Gaps = 119/629 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L Q
Sbjct: 239 LEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPPQT 298
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY QT S +L+ +INDVLD +K+E+ +L E +PF L LD V+ L + A++KG+
Sbjct: 299 DYLQTIQRSANNLLCIINDVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGL 358
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL ++V+ VPE VIGD R +QIITNL+GN+IKFT ++G+I + V
Sbjct: 359 ELTLHVNQDVPEQVIGDAMRLQQIITNLLGNAIKFT-EQGNIDILV-------------- 403
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+VQ K T EQ + L+V + DT
Sbjct: 404 --------AVQAK------------------------------TAEQ---VTLVVEIHDT 422
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S SR +GGTG+GL I+ LV+ MGG+I F S+ GSTF
Sbjct: 423 GIGISESQQTQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYSQVNRGSTF 482
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F +T L+ PD+S G I+ + A T L++
Sbjct: 483 KFHLTL------ELNEAILSRRPDMSHLEGKSLAYIERNATAARAT------LDI----- 525
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD-KEIGLVLHY----MLKQQRRKGGLEI 1012
L+C+ L T S L L + K +D +G+ + Y + Q + ++I
Sbjct: 526 ----LSCTPLQVTHS------LTLAQLPKQHYDFLLVGVPIPYRNNMAVHQDKLLTAMKI 575
Query: 1013 SRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIG--CFQEDPESSKKLQQKR 1070
S ++ L S S+ + ++LK G + KP+ + LI ++E + R
Sbjct: 576 SE---RVILALPSQSQIEAEQLKQIGAKACMIKPISSNRLIPLLSYEEANCVLPAAEPPR 632
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K P L +++ VDDN N ++ L++ D G A+ + +
Sbjct: 633 KLPKLPF-----KVMAVDDNPANLKLIGTLLEELVEETVLCDSGAKAI-AYARENTLEII 686
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMPE+DG +A+ E+ Q++ + + PI+A+TA ++
Sbjct: 687 LMDIQMPEIDGIRAS--------EVIHQMSHHQDT------------PIIAVTAHAVRGQ 726
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
EQ +K GM DY++KP ++ +L A++R+
Sbjct: 727 QEQLLKLGMADYLAKPIDEARLIQALSRY 755
>gi|389879451|ref|YP_006381681.1| Signal transduction histidine kinase [Tistrella mobilis KA081020-065]
gi|388530841|gb|AFK56036.1| Signal transduction histidine kinase [Tistrella mobilis KA081020-065]
Length = 1577
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 196/626 (31%), Positives = 288/626 (46%), Gaps = 103/626 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + AE A KS FLA +SHEIRTPMN V+GM + + TEL Q DY Q +
Sbjct: 825 ELARARDLAEQASRLKSDFLANMSHEIRTPMNAVIGMTHLALKTELTPRQRDYLQKIQGA 884
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIE+GRLE E V F L DVL N+ ++ +A +K +E ++ D
Sbjct: 885 ADGLLGIINDILDFSKIENGRLELEAVDFRLDDVLGNLATVIGHRAEEKRLE---FIFDV 941
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
P+V PG L+G+ ++ Q V ++LA + + + V+ L
Sbjct: 942 APDV----PG-------TLLGDPLRLGQ------VLINLAGNAVKFTETGEVVVSVRL-- 982
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V + G +L V DTG+G+ +
Sbjct: 983 -------VISDADGH---------------------------RLRFAVRDTGIGMTPDQM 1008
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+F PF QAD S +R YGGTG+GLSISR LV +M GE+ S PG GS F+F F
Sbjct: 1009 SHLFEPFTQADGSITRRYGGTGLGLSISRRLVRMMDGEVTVESTPGAGSVFTFDAAFGRS 1068
Query: 907 ERNSLDPKWQQYV--PDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
+W + PD RGL LVIDD + +V L+ + V S +
Sbjct: 1069 R-----ARWSRITARPD---LRGLHVLVIDDNPLARQVLTGMLEGMAFRVVAVPSGEAGL 1120
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
L+ V +LVL+D + GL ++ Q + G + P I ++
Sbjct: 1121 EALAR--GREVEDPYSLVLLDWRLGAGLDGLATAGLIAQAAAEAGAPV----PPIVMITA 1174
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIG----CFQEDPESSKKLQQKRKKPSLGHLLK 1080
+ R ++ GI +L KP S L F + + + P L+
Sbjct: 1175 FGRDDLRQSAEAAGIRAVLGKPFNASTLFDTIMHVFDDGGGDDVRAAATQALPD----LR 1230
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP---PHNFDACFMDLQMP 1137
G ++L+V+DN +N++VA L+ G +V GRAA+D+L P D MDLQMP
Sbjct: 1231 GGRVLLVEDNALNQQVALELLEAAGLVVDVETDGRAALDRLVAGPRPPVHDLVLMDLQMP 1290
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG++AT IR GL ++PI+AMTA + ++C++
Sbjct: 1291 VMDGYEATRAIR--------------------ATPGLANLPIVAMTAHALAEERQRCLEA 1330
Query: 1198 GMDDYVSKPFEDEQLYTAVARFFMSG 1223
GM+D V+KP + E+L VA F G
Sbjct: 1331 GMNDCVTKPVDPERLMAVVAGFVRPG 1356
>gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae AM-19226]
gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae AM-19226]
Length = 1331
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 195/622 (31%), Positives = 291/622 (46%), Gaps = 115/622 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQCMKCG 1198
DG AT IR N + WH +PI+AMTA+ + E+C++ G
Sbjct: 1049 DGITATEHIR-----ANPR----------------WHSLPIVAMTANAMAIDIERCLQAG 1087
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
M+D++SKP E ++ Y + F
Sbjct: 1088 MNDHLSKPIEVDKFYQVLRHFL 1109
>gi|442609645|ref|ZP_21024381.1| hypothetical protein PALB_13100 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441748889|emb|CCQ10443.1| hypothetical protein PALB_13100 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 1387
Score = 249 bits (637), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 203/694 (29%), Positives = 321/694 (46%), Gaps = 137/694 (19%)
Query: 568 PVPWTAINASIGVVVITLLVGHIFHAAINRIAQVE----NDYHEMMELKA---------- 613
P W A G ++ITLLV + R+ +VE + +EL+
Sbjct: 787 PPWWKTWWAYTGYLLITLLVVSVAIYFRTRLQKVEIARQKQFVHELELQVAEKTVSLTSQ 846
Query: 614 ---------RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAH 664
+AE A KS+FLA +SHEIRTPMNGVLGML +L + L + Q A+ A
Sbjct: 847 AEDLASALKKAEEATKLKSEFLANMSHEIRTPMNGVLGMLDLLKSSSLTSEQAHAAEIAS 906
Query: 665 NSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724
+S L++LIND+LD +KIE+ +LE E + F L ++ ++ + A K +EL + ++
Sbjct: 907 SSANSLLTLINDILDFSKIEADKLELELIDFDLRQLISHLAQSMALTAQNKNVELILDLA 966
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSL 784
+ + V DPGR RQ++TN++ N+IKFT+ G+I ++V L
Sbjct: 967 EMEVDEVHSDPGRIRQVLTNILSNAIKFTE-HGYIKLTVKLT------------------ 1007
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
KSD P+ + + +ED+G+GIP E
Sbjct: 1008 -----KSDS--------PL-----------------------QYDFVCQIEDSGIGIPSE 1031
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
+F F Q D+ST+R YGGTG+GLSI++ L +L+ G++ S+ G+GS F +
Sbjct: 1032 KLSTLFDAFSQVDASTTRKYGGTGLGLSITKRLCQLLKGDVSVSSQLGSGSCFEIRLLLN 1091
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ--L 962
+ ++S V S + LV D V R LQ+L + V +NS++ +
Sbjct: 1092 DASKSS-------QVQTTSLVTNVHVLVADRCEHVCTVVRKELQKLSVRVSESNSLENAV 1144
Query: 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFL 1021
AC S+ LVL+D + + + + K+Q K L L F
Sbjct: 1145 ACYQQYRDSDESI----DLVLLDVKLVPPNLDSIAPMFKSKKQSHKTKLVFMTRLNDQF- 1199
Query: 1022 LATSISETDRDELKSDGIVTLLTKPLRLSVL----------IGCFQEDPESSKKLQQKRK 1071
D + L G+ KP+ LS L C E+ E + K ++ +
Sbjct: 1200 --------DANTLIEKGVDGHFAKPVTLSHLHYALGIIHGEAACALENAEVTTKSEKAEQ 1251
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN---FD 1128
+ + Q+L+V+DN VN+ VA L + G +VT + G A+ L + F+
Sbjct: 1252 VNDID--VSNAQVLLVEDNKVNQIVALRILNELGVVVTVAENGVEALQILNDARDERRFN 1309
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD QMP MDG++AT++IR G + E +P++AMTA+ +Q
Sbjct: 1310 VILMDCQMPLMDGYEATYKIR-----------DGHAGHEYKT------IPVIAMTANAMQ 1352
Query: 1189 ASNEQCMKCGMDDYVSKPFE----DEQLYTAVAR 1218
++C+ GMDDY+SKP + E+L + ++R
Sbjct: 1353 GDKQKCLDAGMDDYISKPIDTSLLKEKLRSWISR 1386
>gi|420242507|ref|ZP_14746545.1| PAS domain S-box [Rhizobium sp. CF080]
gi|398067331|gb|EJL58853.1| PAS domain S-box [Rhizobium sp. CF080]
Length = 1251
Score = 249 bits (637), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 201/662 (30%), Positives = 301/662 (45%), Gaps = 127/662 (19%)
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
A + +++ ++ L RAEAAD AKS+FLA +SHEIRTPMNGVLGM ++L + L
Sbjct: 665 AVFTDVTEMKQREEDLTRLLQRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNL 724
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
D Q + SG L+++IND+LD +KI++G+++ PF + +++V +L SS A
Sbjct: 725 DTRQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAPFDPVEAIEDVATLLSSSA 784
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+K IEL + + E V+GD GRFRQI+TNLVGN++KFT+ KGH+F+ D+RS+
Sbjct: 785 AEKDIELIVRGDASIRETVMGDAGRFRQIVTNLVGNAVKFTE-KGHVFI------DLRSE 837
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
+ G + L +
Sbjct: 838 A-------------------------------------------------KGPGEMILSI 848
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
+EDTG+GIP E +F F Q D+S++R + GTG+GL+I+ L EL GG I SE G
Sbjct: 849 RIEDTGLGIPDEKLKSVFDKFSQVDTSSTRRHEGTGLGLAITAGLTELFGGYIDVTSEVG 908
Query: 893 TGSTFSFTVTF-TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
GS F+ + F ERN L +P + G R LV+DD + + L
Sbjct: 909 RGSVFTVHLPFQVVSERNVL-----TALPINTS--GARILVVDDNPVNRRILTEQLTMWG 961
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEI----GLVLHYMLKQQRRK 1007
A+S + LS+ V +D V D + GL L++ R
Sbjct: 962 FDTVAADSGAEGLAILSEAARIG-------VFVDAIVLDYHMPEMNGLDFAKHLRRDARF 1014
Query: 1008 GG--------------------LEISRNLPK---IFLLATSISE------TDRDELKSDG 1038
G L I +L K LL ++I + T R ++++
Sbjct: 1015 DGTGVVFLTSMDMAGDDSMFASLNIQAHLMKPARANLLRSTIIDVVRSIRTKRRAVEAEQ 1074
Query: 1039 IVTL-LTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK---QILVVDDNMVNR 1094
T +P+ +V P S+ + ++ P ++ +LV +DN VN+
Sbjct: 1075 AATRPQPRPVVQAVAPVALAAQPRSTPVITEEPAAPVSTPPMQAAPTLDVLVAEDNEVNQ 1134
Query: 1095 RVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENE 1154
V L+ G + V G AV+ H+ MD+ MP M+G QAT +IR LE E
Sbjct: 1135 IVFTQILQTTGWLFQIVKNGAEAVEAWK-QHDPAVIIMDVSMPVMNGHQATQKIRELEQE 1193
Query: 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYT 1214
H PI+ +TA +++ E C + GMDDY+SKP E L
Sbjct: 1194 TGT------------------HTPIIGVTAHALESDRELCFQVGMDDYLSKPISPEALEA 1235
Query: 1215 AV 1216
V
Sbjct: 1236 KV 1237
>gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
Length = 1342
Score = 249 bits (637), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 603 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 662
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 663 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 722
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 723 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 781
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 782 AQDKLDDLFDA---------------FSQADNSIT------------------------- 801
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 802 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 843
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 844 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 887
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 888 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 944
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 945 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 1000
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 1001 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1059
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1060 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1099
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1100 NDHLSKPIEVDKFYQVLRHFL 1120
>gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
Length = 923
Score = 249 bits (637), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 193/618 (31%), Positives = 302/618 (48%), Gaps = 116/618 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AEAA +KS+F+A VSHEIRTPMN ++GM + M+T+L + Q ++ + +SGK L+
Sbjct: 267 KDEAEAASKSKSEFMANVSHEIRTPMNAIIGMADLTMETDLSSKQREFIKIIISSGKVLL 326
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
LIND+LD +KIE+G+L E V F+LH ++ ++ LF + EL I + VP+ +
Sbjct: 327 RLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVASQTELVIDIRPGVPQRI 386
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDP R RQ++ N+ N+ KFT KG I ++V AD + + K+
Sbjct: 387 IGDPLRLRQVLVNITANAFKFTS-KGEIIITVS-ADQINA-----------------TKT 427
Query: 792 DKVY---NTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848
+ V+ +T G P + +E FK D
Sbjct: 428 EIVFAIKDTGIGIPEEVQPHLFEAFKQAD------------------------------- 456
Query: 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER 908
ST+R YGGTG+GLSIS+ +V LMGG I F S P GSTF FT+T
Sbjct: 457 ---------GSTTRKYGGTGLGLSISKRIVNLMGGNIWFRSRPEDGSTFFFTITPNVAVE 507
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDK-SIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
SL + +P E + LV+DD ++R+ + RY Q VA S + A +
Sbjct: 508 TSL---IEFEIP--QELKNKPVLVVDDNFAVRSVLVRYLKQFGFQPTSVA-SAEEAIKII 561
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN-----LPKIFLL 1022
D Q L++ID L L M + +EI + LP + +
Sbjct: 562 EDRKDD----QFKLLIID---------LKLPGM---NGDEASIEIRKTYSKEELPILMIT 605
Query: 1023 ATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED--PESSKKLQQKRKKPSLGHLLK 1080
AT ++ + + ++ I +++KPL+ + L E + K+ + KP + K
Sbjct: 606 ATELN-SALSKAQNAQINRMISKPLKQATLFNSIMETFGYDVPKEYSYEPSKP-IKDEFK 663
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
++L+V+DN +N++VAE L+ G ++ G AV ++ +D MD+QMPEMD
Sbjct: 664 SFRLLLVEDNPINQQVAEQILEPTGIEISSAPNGAEAV-RMVQEAGYDIVLMDIQMPEMD 722
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G++AT IR+ ++ + +PI+AMTA ++ E+C+ GMD
Sbjct: 723 GYEATTIIRN--------------------DLKMKELPIIAMTAHAMRGDKEKCIASGMD 762
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
DY+ KP D++L ++ R
Sbjct: 763 DYIPKPI-DKELMISIIR 779
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN--FDACFMDLQM 1136
LK K +LVVDDN R V LK+ G T V A+ + + F +DL++
Sbjct: 519 LKNKPVLVVDDNFAVRSVLVRYLKQFGFQPTSVASAEEAIKIIEDRKDDQFKLLIIDLKL 578
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P M+G +A+ +IR + S E +PIL +TA + ++ +
Sbjct: 579 PGMNGDEASIEIR--------KTYSKE------------ELPILMITATELNSALSKAQN 618
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
++ +SKP + L+ ++ F
Sbjct: 619 AQINRMISKPLKQATLFNSIMETF 642
>gi|384262061|ref|YP_005417247.1| Sensor protein [Rhodospirillum photometricum DSM 122]
gi|378403161|emb|CCG08277.1| Sensor protein [Rhodospirillum photometricum DSM 122]
Length = 1680
Score = 249 bits (637), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 189/618 (30%), Positives = 280/618 (45%), Gaps = 127/618 (20%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
+KSQFLA +SHEIRTPMN ++G+ +L D ++ + + L+ LIND+LD
Sbjct: 940 SKSQFLANMSHEIRTPMNSIIGLTHVLRRDITDVRHSEHLTKIAGAAQHLLGLINDILDL 999
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIE+GR+ E V F L V D V L +A+ KG+EL + + D VP + GD R Q
Sbjct: 1000 SKIEAGRMHLEKVDFDLETVFDTVCGLVRDRADAKGLELVVDL-DSVPLRLRGDGMRLGQ 1058
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
I+ N GN++KFT+ G + + L R++V
Sbjct: 1059 ILVNFAGNAVKFTE-HGRVVLRASLLSQTRTEV--------------------------- 1090
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
W F+ V D+G+G+ E ++R+F PF QAD S
Sbjct: 1091 ---------WVRFE-------------------VSDSGIGLAPEQRLRLFLPFEQADPSI 1122
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
+R YGGTG+GL+ISR L ELM G IG S PG GSTF + F E R++++ ++
Sbjct: 1123 TRKYGGTGLGLAISRRLTELMEGRIGVDSLPGQGSTFWVEIPF-EPSRSAIEAHIKRI-- 1179
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLA 980
E R R LV+DD + + L + + V +S Q A + +T
Sbjct: 1180 ---EVRDRRILVVDDLEDARDSLLHMLAMMGVQVMAVDSGQAALEAV--MAATFEQKPFD 1234
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL--------PKIFLLATSISETDRD 1032
L+LID + G+ G+E+ R+L P L++ + R+
Sbjct: 1235 LLLIDA----RMPGM------------SGIEVGRHLYTLPLPEQPMRLLISAQNEDVSRE 1278
Query: 1033 ELKSDGIVTLLTKPLRLSVLIGCFQED----------PESSKKLQQKRKKPSLGHLLKGK 1082
L + G +L KP+ S L Q+ PE+ ++ R++ G
Sbjct: 1279 RLAAAGFFEMLAKPITPSRLFEALQDAFSGHHSLAALPEAGDAERRLRQR-------GGA 1331
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+L+V+DN+V++ VA+ L G V D G A D L +D MD+QMP MDG
Sbjct: 1332 SLLLVEDNVVSQEVAQELLTSVGMRVDVADNGEIAAD-LARKRTYDLILMDMQMPMMDGL 1390
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
AT IR N + VPI+AMTA+ + C+ GM+D+
Sbjct: 1391 AATRLIRADPNRQD--------------------VPIIAMTANAFEEDRAACLAAGMNDH 1430
Query: 1203 VSKPFEDEQLYTAVARFF 1220
+SKP E LY V R+
Sbjct: 1431 ISKPVNPEILYRTVLRWL 1448
>gi|402086641|gb|EJT81539.1| sensor protein gacS [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 1304
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 191/605 (31%), Positives = 285/605 (47%), Gaps = 102/605 (16%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A+ KS+FLA +SHEIRTPMNG++GM Q+ +DT+L Q + ++ L+++I
Sbjct: 716 AELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTQYQREMLNIVNSLANSLLTII 775
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
+D+LD +KIE+ R+ E +P+ L + N L + KAN+K ++L +V VP+ VIGD
Sbjct: 776 DDILDLSKIEARRMVIEEIPYTLRGTVFNALKTLAVKANEKFLDLTYHVDASVPDHVIGD 835
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQII NLVGN+IKFT + G + +++ A +
Sbjct: 836 SFRLRQIILNLVGNAIKFT-EHGGVSLTISQASN-------------------------- 868
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
G P + E V DTG+GIP + IF F
Sbjct: 869 -----GIPCGSSEYAIE--------------------FVVTDTGIGIPADKLDLIFDTFQ 903
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD S +R +GGTG+GLSIS+ LV LMGG++ S+ G GS+F FT + + +
Sbjct: 904 QADGSMTRKFGGTGLGLSISKRLVNLMGGDVWVKSKYGKGSSFYFTCRVRLAGSDLILIE 963
Query: 915 WQQYVPDVSEFRGLRALVIDD-KSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
Q + ++G + L ID K+ L L + V S Q L+ C+
Sbjct: 964 KQ-----LKPYKGHQVLFIDKGKTSHGSQVATMLGALGLQAIVLESEQ--HYTLTKACNK 1016
Query: 974 SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
P +V+ D RR G++ + LP I LLA S+ + +
Sbjct: 1017 GTSPYDVIVVDSIDT---------------ARRLRGIDDFKYLP-IVLLAPSVHVSLKSC 1060
Query: 1034 LKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVN 1093
L GI + +T P +L L E+ R PSL K IL+ +DN VN
Sbjct: 1061 LDL-GITSYMTTPCQLIDLGNGMVPALEN-------RATPSLADNTKSFDILLAEDNTVN 1112
Query: 1094 RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLEN 1153
+R+A L+K+ +VT V G A++ + FD MD+QMP M GF+AT +IR E
Sbjct: 1113 QRLAVKILEKYHHVVTVVSNGEEALEAV-KAKKFDVILMDVQMPVMGGFEATAKIREYER 1171
Query: 1154 EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLY 1213
+ Q PI+A+TA + E+C++ MD+Y+SKP + L
Sbjct: 1172 SLGSQ-----------------RTPIIALTAHAMMGDREKCIEAQMDEYLSKPLQQNHLI 1214
Query: 1214 TAVAR 1218
+ +
Sbjct: 1215 QTILK 1219
>gi|383812706|ref|ZP_09968133.1| hybrid sensory histidine kinase BarA [Serratia sp. M24T3]
gi|383298116|gb|EIC86423.1| hybrid sensory histidine kinase BarA [Serratia sp. M24T3]
Length = 921
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 183/613 (29%), Positives = 292/613 (47%), Gaps = 112/613 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + + T+L Q DY QT S +L+
Sbjct: 282 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQLSPTQTDYLQTIERSANNLL 341
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++INDVLD +K+E+G+L E +PF L ++LD V+ L + A+ KG+EL I V VPE V
Sbjct: 342 TIINDVLDFSKLEAGKLVLEHIPFSLREMLDEVVILLAHSAHDKGLELTINVHSNVPEFV 401
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +Q++TNL+GN+IKFT++ G+I ++V L
Sbjct: 402 LGDPMRLQQVVTNLLGNAIKFTEN-GNIDINVEL-------------------------- 434
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+S +N +++L + DTG+GI Q ++F
Sbjct: 435 ----------------RSQKN-------------AQVELEMQFHDTGIGISERQQAQLFQ 465
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S +R +GGTG+GL I++ LV+ MGG+I F S+ GSTF F VT E +
Sbjct: 466 AFRQADASITRRHGGTGLGLVITQRLVKEMGGDISFYSQLNRGSTFWFHVTLELNESHHQ 525
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
P+ + D + + A K+++ ++ M + V +
Sbjct: 526 RPRSMACLRD-KKLAYIEANPTATKAVKEMLS-------SMPIEVIHR-----------T 566
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
S ++LP I V+ I L H ++R + ++ ++ L S +
Sbjct: 567 SQALLPDEHYDFI---VYGMPILLNHHLNDYEERLQ---QLLSQCDRLILALPSQFQISA 620
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPES--SKKLQQKRKKPSLGHLLKGKQILVVDD 1089
++LK G+ L KPL L+ EDP++ + ++ P ++ VDD
Sbjct: 621 EQLKDKGVYACLNKPLSSVRLLPYLLEDPKNFIEEDNSHDQRLP--------MTVMAVDD 672
Query: 1090 NMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
N N ++ L++ + G A++ L N D MD+QMP +DG + + I
Sbjct: 673 NPANLKLIGALLEELVETTLLCNSGEEAIE-LAKNVNMDVILMDIQMPNIDGIRTSELIH 731
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
L + I PI+A+TA + EQ +K GM+DY+SKP ++
Sbjct: 732 LLPHHIT--------------------TPIVAVTAHSLSGEREQFIKAGMEDYLSKPIDE 771
Query: 1210 EQLYTAVARFFMS 1222
L +AR+ S
Sbjct: 772 GMLKVVLARYHSS 784
>gi|424591352|ref|ZP_18030781.1| sensory box protein [Vibrio cholerae CP1037(10)]
gi|408031892|gb|EKG68493.1| sensory box protein [Vibrio cholerae CP1037(10)]
Length = 1331
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1089 NDHLSKPIEVDKFYQVLRHFL 1109
>gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426]
gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426]
Length = 1342
Score = 249 bits (636), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 603 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 662
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 663 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 722
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 723 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 781
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 782 AQDKLDDLFDA---------------FSQADNSIT------------------------- 801
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 802 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 843
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 844 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 887
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 888 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 944
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 945 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 1000
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 1001 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1059
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1060 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1099
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1100 NDHLSKPIEVDKFYQVLRHFL 1120
>gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
Length = 1331
Score = 249 bits (636), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGISATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1089 NDHLSKPIEVDKFYQVLRHFL 1109
>gi|153870769|ref|ZP_02000098.1| two-component histidine kinase [Beggiatoa sp. PS]
gi|152072765|gb|EDN69902.1| two-component histidine kinase [Beggiatoa sp. PS]
Length = 1262
Score = 249 bits (636), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 183/631 (29%), Positives = 305/631 (48%), Gaps = 124/631 (19%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
+++ K +AE A+ AKS FLA +SHEIRTPMNG++G+ Q+ + T+L A Q DY +S
Sbjct: 538 KLLTAKEQAELANKAKSDFLANMSHEIRTPMNGIIGLTQLALKTDLTAEQQDYLTHLESS 597
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+ +I+D+LD +KIE+G L+ E V F L VL ++ S+ + +KG+EL + +
Sbjct: 598 SQALLVIIDDILDFSKIEAGMLQMELVDFSLDKVLHHLFSVLGMRIEEKGLELLLDIDKS 657
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP L+G+ ++ G + +++
Sbjct: 658 VPHY--------------LIGDPLRL----GQVLINL----------------------- 676
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V N + D+ + +ML+ T +I L +++D+G+GI EA
Sbjct: 677 -------VTNAIK---FTDQGEILIKIEMLNLTAK-----QITLCFSIKDSGIGISPEAI 721
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
++F F QAD+ST+R +GGTG+GL+I + LVE+MGG I S+ GS+FSFT F
Sbjct: 722 AQLFDAFTQADTSTTRKFGGTGLGLAICKRLVEMMGGNIWVESQLEQGSSFSFTALFGRQ 781
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
+ ++++ + G++AL++DD + + L + V +S + A
Sbjct: 782 SK-----EYERIFKLPGDLHGIKALIVDDNKTSRTILQQELNTFSLQVIAVDSGEAAIVA 836
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR------NLPKIF 1020
L T LV +D W K G+ G+E +R NLP +
Sbjct: 837 LETAAQTQ---PYDLVFLD---W-KMPGM------------NGIETARCIKQNANLPPVS 877
Query: 1021 LLATS-------ISETDRDELKSDGIVTLLTKPLRLSVLIGCF-----QEDPESSKKLQQ 1068
++ + ++ETD+D L + LTKP+ S+L + D ++S +
Sbjct: 878 IIMMTAFSRENFLTETDKDYLDA-----FLTKPVTQSLLFDTIMTVFGKNDLKTSPFFNK 932
Query: 1069 KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
+ +K +ILVV+DN +N++V + ++ G IV + G+ AV + H FD
Sbjct: 933 QNTITIDLTTIKDARILVVEDNSINQQVIQKTIESEGLIVEIANNGKEAVMMVDNIH-FD 991
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
A MD+QMPEMDG +AT IR N +PI+AMTA +
Sbjct: 992 AVLMDMQMPEMDGMEATQLIRQKTQHDN--------------------LPIIAMTAHAMS 1031
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KPF+ + L++ + ++
Sbjct: 1032 GVREKLLAVGMNDYITKPFDVDDLFSVLEKW 1062
>gi|333996439|ref|YP_004529052.1| multi-sensor hybrid histidine kinase [Treponema azotonutricium ZAS-9]
gi|333735154|gb|AEF81103.1| multi-sensor hybrid histidine kinase [Treponema azotonutricium ZAS-9]
Length = 711
Score = 249 bits (635), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 178/614 (28%), Positives = 304/614 (49%), Gaps = 117/614 (19%)
Query: 619 DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA-QTAHNSGKDLISLINDV 677
++AKS FLAT+SHE+RTPMN ++GM + + DY + + L+ +INDV
Sbjct: 197 NLAKSTFLATMSHEMRTPMNAIIGMTS-IGKAAPGLERKDYCFKKIEEASTHLLGVINDV 255
Query: 678 LDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGR 737
LD +KIE+ +LE F+ +L +++ + + ++K + +Y+ ++P ++IGD R
Sbjct: 256 LDMSKIEANKLELSPESFNFEKMLQKTVNVINFRVSEKQQDFTVYIDAKIPSIIIGDDQR 315
Query: 738 FRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNT 797
Q+ITNL+ N++KFT +KG I + L + EK + ++Q
Sbjct: 316 LAQVITNLLSNAVKFTPEKGRIHLDSRLLKE------------EKGIYTIQ--------- 354
Query: 798 LSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
+++ DTG+G+ E + R+F+ F QA+
Sbjct: 355 ----------------------------------ISISDTGIGLSEEQKGRLFSSFQQAE 380
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQ 917
+STSR YGGTG+GL+IS+ +VE+MGG I SEPG GS+F FT+ G + P
Sbjct: 381 NSTSRKYGGTGLGLAISKRIVEMMGGSIWIESEPGKGSSFIFTMQVPRGSEDQQVP---- 436
Query: 918 YVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLP 977
VP + ++ L +DD LE + +A + AC D S S
Sbjct: 437 -VPG-RNWDNVKVLAVDDDP----------DTLEYFMQIAEQIGFAC----DAASGS--- 477
Query: 978 QLALVLI-DKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL-------PKIFLLATSISET 1029
+ AL LI +K +D ++++ + G+E++R + K ++ S +E
Sbjct: 478 EDALRLIAEKGAYD------IYFVDWKMPGMNGIELARQIKGKEEQAAKSVIIMISATEW 531
Query: 1030 D--RDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
D + E K+ G+ L+KPL S ++ E + +++ + ++ + KG IL+V
Sbjct: 532 DLIQGEAKAAGVDKFLSKPLFPSPIVDSINE-CLGTGAIREIQTGETVSY--KGHCILLV 588
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT-PPHNFDACFMDLQMPEMDGFQATW 1146
+D +N+ + L+ + C D G A+ + P +D FMD+QMPEMDG++AT
Sbjct: 589 EDVEINQEIVLTLLEPTCLTIDCADNGAKALSMFSAAPEKYDMIFMDVQMPEMDGYEATR 648
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
+IR LEN + S +PI+AMTA+V + E+C+ GM+D+V KP
Sbjct: 649 RIRALEN-----VPHAAS------------IPIVAMTANVFREDVERCLAAGMNDHVGKP 691
Query: 1207 FEDEQLYTAVARFF 1220
+ ++++ + ++
Sbjct: 692 IDMDEIFKKLQKYI 705
>gi|59712689|ref|YP_205465.1| hybrid sensory histidine kinase BarA [Vibrio fischeri ES114]
gi|59480790|gb|AAW86577.1| hybrid sensory histidine kinase, in two-component regulatory system
with GacA [Vibrio fischeri ES114]
Length = 931
Score = 249 bits (635), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 204/686 (29%), Positives = 305/686 (44%), Gaps = 135/686 (19%)
Query: 552 DPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMME- 610
D R+ + R + K + I + I+L H+ I Q +D E +E
Sbjct: 211 DRIRRGHLDVRIENKLHGELDTLKNGINAMAISLSEYHV--EMQQSIDQATSDLRETLEQ 268
Query: 611 ----------LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T L Q DY
Sbjct: 269 LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTSLSENQQDYL 328
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
QT S +L+++IND+LD +K+E+G+L E +PF D LD V+SL + A++KG+E+
Sbjct: 329 QTIERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEIT 388
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
+ + RVP +IGDP R +Q++ NLVGN+IKFT+ KG+I +SV
Sbjct: 389 LKIDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTE-KGNIDISVE---------------- 431
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
++H +D + L V DTG+G
Sbjct: 432 ------LKHLTDDY---------------------------------VDLQFVVRDTGIG 452
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
I Q ++F F QAD+S SR YGGTG+GL I++ L+ MGGEIG S GSTF FT
Sbjct: 453 ISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFT 512
Query: 901 VTFTEGERNSLD-PKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
+ N D P ++ D+++ + L+I+ A + + Q + V V
Sbjct: 513 IRM-----NPTDLPMLNEH--DITQLERKKLLLIEPNMQSASILQQ--QFISHGVFV--- 560
Query: 960 MQLACSYLSDTCSTSVLPQLA----LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
S LP++ LI K + M Q +S N
Sbjct: 561 -----------TYRSTLPEIIEPHDYALISLSSNSKPSIETIQEMTSQ--------LSAN 601
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSL 1075
I + S DEL +T L+KP L+ + K LQ + P L
Sbjct: 602 CSTIIVGLPSTELALTDELNQFSHITCLSKPFAKKKLLDALLVE----KDLQPVPELPDL 657
Query: 1076 GHLLKGKQ-----ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
+Q ++ VDDN N ++ L + V D G AV + T H FD
Sbjct: 658 MAHASEEQKLPIKVMAVDDNPANLKLISALLSEQVETVITCDNGLDAVQQATEQH-FDII 716
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG A +IR + +N Q P++A+TA ++
Sbjct: 717 LMDIQMPKMDGVMACKEIR--KTALNAQ------------------TPVVAVTAHAMEGE 756
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAV 1216
E+ + GMDDY++KP E+ L +
Sbjct: 757 RERLISEGMDDYLTKPIEEHVLQQVI 782
>gi|389879552|ref|YP_006381782.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
gi|388530942|gb|AFK56137.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
Length = 1397
Score = 249 bits (635), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 202/642 (31%), Positives = 311/642 (48%), Gaps = 115/642 (17%)
Query: 588 GHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
G ++ AAI + + + E+ + A+AA+ AKS FLA +SHEIRTPMNGV GMLQ+L
Sbjct: 725 GPMYVAAIADMTERDRSMAELRRAREEADAANAAKSAFLANMSHEIRTPMNGVTGMLQIL 784
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
+ T LDA Q YA+ A +S L+ LI+D+LD +K+E+GR+E E +PF L +++D V+++
Sbjct: 785 LATPLDADQRRYAEVARDSADSLLGLIDDILDVSKLEAGRMELERLPFDLEELVDGVIAI 844
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH--L 765
+ +A + I+LA V IGDP R RQI+ NL GN++KFT GH+ + V
Sbjct: 845 LAPRARDRRIDLAGVVDSSAVGSWIGDPTRIRQILVNLAGNAVKFTT-AGHVSIEVSAIA 903
Query: 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQL 825
ADD R ++ F++ D
Sbjct: 904 ADDDRGRL--------------------------------------RFRVEDT------- 918
Query: 826 GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
GVGI + ++F PF QAD+S +R +GGTG+GL+I R L LMGG I
Sbjct: 919 ------------GVGIAADHLDQLFRPFSQADASVTRRFGGTGLGLAICRDLTALMGGTI 966
Query: 886 GFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRY 945
VS G GS F+ + ER + + P + G RALV+D EVTR
Sbjct: 967 DVVSREGEGSVFTVEIGL---ERVA---DAARTTPSMPVLAGRRALVVD----AVEVTR- 1015
Query: 946 HLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV-WDKEIGLVLHYM---- 1000
M ++ + C ++ AL++++ V ++ I LV+ +
Sbjct: 1016 -----RMVARQIEALGMDCVEVASAGE-------ALIILEMSVAGERPIDLVISGLNLTG 1063
Query: 1001 LKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE-- 1058
L R + + +L + ++A + DE DG++ +KP+R L
Sbjct: 1064 LSAARLARWVRLDPDLAGVKVIAATCGVPVPDEELYDGVI---SKPVRRRELADLMHRLL 1120
Query: 1059 DPE-SSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
DPE ++ + GH G+++L+V+DN NR VA L++ G V + G
Sbjct: 1121 DPEAAAARGVSPAPAEGPGH---GRRLLLVEDNATNRTVATVMLERQGYTVETAETGEGV 1177
Query: 1118 VDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177
+L +FDA MD+QMP +DG +AT +IR E L V
Sbjct: 1178 ELRLA-EGSFDAVLMDIQMPVVDGIEATRRIRAAEAAAC-----------------LPPV 1219
Query: 1178 PILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
PI+A+TA+ + E+ + GM+DY++KPF+ + L VA++
Sbjct: 1220 PIVALTANAMAGMREEYLAAGMNDYLAKPFQVDDLLAVVAKW 1261
>gi|429081627|ref|ZP_19144729.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter condimenti
1330]
gi|426549762|emb|CCJ70770.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter condimenti
1330]
Length = 920
Score = 249 bits (635), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 195/628 (31%), Positives = 294/628 (46%), Gaps = 118/628 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+S+INDVLD +K+E+G+L E +PF L + LD V++L + A+ KG+
Sbjct: 329 DHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRNTLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL I V VP+ VIGDP R +Q+ITNLVGN+IKFT D G+I D
Sbjct: 389 ELTISVRHDVPDNVIGDPLRLQQVITNLVGNAIKFT-DHGNI-----------------D 430
Query: 778 KVLEK---SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
V+EK S N VQ + ++ +T G P D+ +
Sbjct: 431 IVVEKRAISNNKVQIEV-QIRDTGIGIPERDQSR-------------------------- 463
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P G
Sbjct: 464 --------------LFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRG 509
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
STF F ++ L+P G+R ++ A+ TR L + V
Sbjct: 510 STFWFHISL------DLNPNALADRHATDMLAGMRLAYVEKNEAAAKSTRDLLAHTPLTV 563
Query: 955 HVANSMQLACSYLSDTCSTSVLPQ--LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
+ + + LP+ ++L V D+E + H L +
Sbjct: 564 EYSPEL-------------ATLPEAHYDILLYAAPVTDREPLTMRHDQLAR--------- 601
Query: 1013 SRNLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+ L +LA ++ + + LK +G L KP+ + L+ E + KK R+
Sbjct: 602 AATLADCLILALPCHAQINAEMLKKEGASACLLKPVTATRLLPLLLE--QCRKK--NARE 657
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
P G ++ VDDN N ++ L+ V D G AV++ T FD
Sbjct: 658 LPGNGQGKLEMTVMAVDDNPANLKLIGALLEDLVQRVVLCDSGHQAVERAT-LQPFDIIL 716
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP+MDG A IR L + H PI+A+TA +
Sbjct: 717 MDIQMPDMDGIHACELIRKLPQQ--------------------QHTPIIAVTAHAMSGQK 756
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L + R+
Sbjct: 757 EKLLSAGMNDYLAKPIEEEKLRALLLRY 784
>gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae V51]
gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae V51]
Length = 1331
Score = 249 bits (635), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLDHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1089 NDHLSKPIEVDKFYQVLRHFL 1109
>gi|399036702|ref|ZP_10733666.1| signal transduction histidine kinase [Rhizobium sp. CF122]
gi|398065529|gb|EJL57150.1| signal transduction histidine kinase [Rhizobium sp. CF122]
Length = 946
Score = 249 bits (635), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 201/637 (31%), Positives = 298/637 (46%), Gaps = 135/637 (21%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ L +RAEAAD KS+FLA +SHEIRTPMNGVLGM ++L T+LD Q + S
Sbjct: 394 ELERLLSRAEAADRVKSEFLANMSHEIRTPMNGVLGMAELLAKTDLDTRQKTFIDIIVKS 453
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G L+++IND+LD +KI++G++ F L D +++V +L SS A +K I+L + +
Sbjct: 454 GNALVTIINDILDFSKIDAGQMTLRRTTFDLVDAIEDVATLLSSSAAEKNIDLLVRTAPD 513
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P VIGD GRFRQIITNL+GN++KFT+ +GH+ V DV +D+++
Sbjct: 514 LPSAVIGDAGRFRQIITNLIGNAVKFTE-RGHVLV------DVGFTPGAQDEIM------ 560
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
S +V +T G P G LE+
Sbjct: 561 ---ASIRVEDTGIGIP-------------------------------------GDKLES- 579
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
IF F Q D+S++R + GTG+GL+I+ LV+L GG + S+PG GS F+ + F
Sbjct: 580 --IFDKFSQIDTSSTRRHEGTGLGLAITTGLVDLFGGYLEVDSQPGEGSVFTVNLPFVVA 637
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
L PK P RG R L++DD ++ ++ + QLA
Sbjct: 638 AAR-LAPK-----PLPVNVRGARVLIVDDNAVNRQIL---------------TEQLAVWG 676
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN---------LP 1017
+ L +A++ ++ +VL Y + G EI+R LP
Sbjct: 677 FDGAAAGDGLEAVAILEAADELGIGIDAVVLDYQMPGM---NGAEIARKLRADCRFERLP 733
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQ---------- 1067
IFL + IS T++D +G L+ KP R +VL + +S+ Q
Sbjct: 734 IIFLTSMDISGTEKDFAALNGQAYLM-KPARANVLRNTIVDVVRTSRTKQIATAVNILPN 792
Query: 1068 QKRKKPSLGHLLKGKQ--------ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV- 1118
+ PSL ++ + +LV +DN VN+ V + L++ G V G+ AV
Sbjct: 793 VQETAPSLLPKVESSERMPAGFIDVLVAEDNEVNQIVFKQILQETGVSFLVVSNGQEAVE 852
Query: 1119 --DKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH 1176
D+ TP MD+ MP M+G AT IR E G H
Sbjct: 853 AWDRYTP----RIIMMDVSMPVMNGHDATRAIRDRER-------------------GQGH 889
Query: 1177 -VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
VPI+ +TA + + C++ GMDDY+SKP E L
Sbjct: 890 RVPIIGVTAHALDVDRDLCLEAGMDDYMSKPISPELL 926
>gi|262403062|ref|ZP_06079622.1| hypothetical protein VOA_001043 [Vibrio sp. RC586]
gi|262350561|gb|EEY99694.1| hypothetical protein VOA_001043 [Vibrio sp. RC586]
Length = 1045
Score = 249 bits (635), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 199/636 (31%), Positives = 298/636 (46%), Gaps = 128/636 (20%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ E +A+AE A KS FLA +SHEIRTPMN ++GM + + TEL A Q DY H+
Sbjct: 282 QELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALKTELSAKQRDYVSKIHS 341
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+ +IND+LD +KIE+G+L E + F L +VL NV + KA KG+EL +
Sbjct: 342 SATLLLGIINDILDFSKIEAGKLSIERIEFSLDEVLHNVSMVTGQKAFDKGLELLFSLPR 401
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P L+G+ ++ Q V ++L + N
Sbjct: 402 EIPR--------------KLIGDPLRIGQ------VVINLVN-----------------N 424
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME-QLGRIKLLVTVEDTGVGIPLE 844
+V K E ++ N E Q GRI+L V DTG+G+ +
Sbjct: 425 AV--------------------KFTEQGEISVNVQVGERQTGRIQLQFHVMDTGIGMTEK 464
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
+F F QAD ST+R YGGTG+GLSISR LVELM GEI +S+P GS F+FT F
Sbjct: 465 QTRHLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVISQPEEGSCFTFTAWFD 524
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
E S P+ VPDV +RAL++DD E+ + L L++ A + A
Sbjct: 525 VDEEQSTPPR---VVPDV--LADIRALIVDDNDHAREILQDMLLILDIPPETAANGLEAL 579
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF---- 1020
L LV +D W+ G+E +R + + F
Sbjct: 580 HKLEQGIENG--KPFNLVFMD---WNMP-------------EMNGIEATRAIRQTFTAEL 621
Query: 1021 ----LLATSISETDRDELKSD-GIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRK 1071
++ T+ + D ++ S+ I LTKP+ S +L+ F + S
Sbjct: 622 QPKVVIVTAYDKDDLQQVISEIDICGFLTKPISQSELYDLLVNVFVGNTSSPI------T 675
Query: 1072 KPSLGHL----LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT----P 1123
P L H L+G ++L+ +DN +N+++A ++ +VT + G+ A++ L
Sbjct: 676 TPLLHHNEHCDLRGLRVLLTEDNEINQQIALELMEAKELLVTTANNGKEALEHLAHSLET 735
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
FD FMDLQMP MDG++AT IR + E N+ P++AMT
Sbjct: 736 QQRFDIIFMDLQMPVMDGYEATRHIRSIP-EHND-------------------TPLIAMT 775
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
A + E+C+ GM+D+VSKP + + LY + ++
Sbjct: 776 AHAMVEERERCLGIGMNDHVSKPIDPDLLYRTIGKW 811
>gi|376295949|ref|YP_005167179.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
ND132]
gi|323458510|gb|EGB14375.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
ND132]
Length = 1118
Score = 249 bits (635), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 196/654 (29%), Positives = 311/654 (47%), Gaps = 110/654 (16%)
Query: 579 GVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMN 638
G+ +++ L+G + A IA E + E+ + AE A+ AKS FLA +SHEIRTPMN
Sbjct: 330 GIFLMSALIG-LTRARF--IAARERNGRELETARRAAEEANRAKSDFLARMSHEIRTPMN 386
Query: 639 GVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698
++G+ + + T+L A Q DY S L+ +IND+LD +KIE+GRL + F L
Sbjct: 387 AIIGLTHLALKTQLTAKQADYLAKVSLSANSLLGIINDILDFSKIEAGRLTVDEADFLLD 446
Query: 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGH 758
DVL+N++++ A QKGIE + V VP R R G++++ Q
Sbjct: 447 DVLNNIINMLGLSAEQKGIEFLLLVRSTVPN-------RVR-------GDALRLGQ---- 488
Query: 759 IFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDN 818
V ++L ++ + + +L+ L
Sbjct: 489 --VLLNLTNNAIKFTEKGEVILQADL---------------------------------- 512
Query: 819 TNTMEQLGRIKLL-VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCL 877
+EQ G ++ +V DTG+GI E ++F PF QAD S +R +GGTG+GLSIS+ L
Sbjct: 513 ---LEQDGTTAVIRFSVRDTGIGIGPEHLDQLFQPFSQADGSITRQFGGTGLGLSISKRL 569
Query: 878 VELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV-SEFRGLRALVIDDK 936
V++MGG++ VSEPG GS FSFT+ L P + +E RGL LV+DD
Sbjct: 570 VKMMGGDMAVVSEPGKGSEFSFTLPL------KLQPDHANDTFEYPTEIRGLPVLVVDDS 623
Query: 937 SIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLV 996
+ V L+ V A+ A L + LV+ D ++ D + G+
Sbjct: 624 RMSRMVLCKMLESFTFKVTEASCATDALKLLE---ARDADDPFKLVITDWNMPDID-GIQ 679
Query: 997 LHYMLKQQ---RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL- 1052
L ++ RRK P+I +L E+ R + G+ + KP S+L
Sbjct: 680 LALRIRTAANIRRK---------PRIIMLTAYGQESIRRRAEEIGLDGYMLKPFNRSILF 730
Query: 1053 ---IGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVT 1109
+ ES +L + + L+G +L+ +DN +N++VA L+ V+
Sbjct: 731 DTVMDALSGGIESRARLTPRADPSGVPQNLRGAHVLLAEDNEINQQVAREILEGADIRVS 790
Query: 1110 CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMF 1169
D GR A++ + +FDA MD+QMP MDGF+A IR A G+++
Sbjct: 791 IADNGRKAME-MALAGDFDAVLMDIQMPVMDGFKAVRGIR----------AGGKTA---- 835
Query: 1170 GNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
+PI+AMTA + E+ ++ GM+D+V+KP + ++L ++ + G
Sbjct: 836 -------LPIIAMTAHALVGDREKSLEAGMNDHVTKPIDPDELMRTLSHWLPDG 882
>gi|422922661|ref|ZP_16955842.1| sensory box protein [Vibrio cholerae BJG-01]
gi|341645454|gb|EGS69601.1| sensory box protein [Vibrio cholerae BJG-01]
Length = 1331
Score = 249 bits (635), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVSRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1089 NDHLSKPIEVDKFYQVLRHFL 1109
>gi|333996259|ref|YP_004528872.1| sensory transduction histidine kinase [Treponema azotonutricium
ZAS-9]
gi|333736520|gb|AEF82469.1| sensory transduction histidine kinase [Treponema azotonutricium
ZAS-9]
Length = 720
Score = 249 bits (635), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 182/611 (29%), Positives = 289/611 (47%), Gaps = 99/611 (16%)
Query: 605 YHEMMELKAR--AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA-Q 661
Y + +KA+ AE A +KS+FLA +SHEIRTPMN ++GM + + D + DYA
Sbjct: 181 YQTQIYIKAQQDAEIASKSKSEFLANMSHEIRTPMNAIIGMTS-IGKSATDIDRKDYAFG 239
Query: 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
N+ L+ +IND+LD +KIE+ +LE + F +L V+++ + + +K I
Sbjct: 240 KIENASTHLLGIINDILDMSKIEANKLELSYAEFDFEKMLQKVVNVINFRVEEKHQNFTI 299
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLE 781
+ +P+ +IGD R Q+ITNL+ NS+KFT ++G I + HL + S D+
Sbjct: 300 RIDKNIPQNLIGDDQRIAQVITNLLSNSVKFTPEEGSIHLDAHLVKEEGSPPDLP----- 354
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
G + V V DTG+GI
Sbjct: 355 --------------------------------------------GVCTIQVEVTDTGIGI 370
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
E Q R+F+ F QA+SSTSR +GGTG+GL+IS+ +VE+MGG I SEPG GSTF+FTV
Sbjct: 371 NKEQQSRLFSSFQQAESSTSRKFGGTGLGLAISKRIVEMMGGSIWIESEPGKGSTFAFTV 430
Query: 902 TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH---LQRLEMAVHVAN 958
G D K + ++ +R L +DD E+ Y RL + +A
Sbjct: 431 QTKRG-----DSKPASLLRPGVNWKNIRILAVDDAP---EIREYFGDIASRLGITWDIAA 482
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
S + AC+ + + +D + + G+ +++Q+ + N
Sbjct: 483 SGEDACALVKQNGPYDIY------FVDWKMPGMD-GIEFSRRIQEQKEE-------NHSV 528
Query: 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL 1078
I +++ + + E K+ G+ L KPL LS + E + L ++ +
Sbjct: 529 IIMISAAEWVSIEGEAKAAGVDKFLPKPLFLSSITDYINECLGAGNTLSEQDSGDA--EH 586
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT-PPHNFDACFMDLQMP 1137
K +L+ +D +NR + L+ + + G A+ T P +D FMD+QMP
Sbjct: 587 FKAYHVLLAEDVEINREIVLALLEPTELQIDSAENGAEALRMFTETPDRYDMIFMDVQMP 646
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EMDG++AT +IR L+ ++I PI+AMTA+V + E C+
Sbjct: 647 EMDGYEATRRIRALDIPRAKKI------------------PIIAMTANVFREDIENCLAA 688
Query: 1198 GMDDYVSKPFE 1208
GM+D+V KP +
Sbjct: 689 GMNDHVGKPLD 699
>gi|406894954|gb|EKD39642.1| hypothetical protein ACD_75C00336G0003, partial [uncultured
bacterium]
Length = 805
Score = 249 bits (635), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 193/623 (30%), Positives = 289/623 (46%), Gaps = 101/623 (16%)
Query: 601 VENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
V E++ K +AE+A AKS+FLA +SHEIRTPMNGV+G +L T L Q Y
Sbjct: 255 VRERTEELILAKEQAESASRAKSEFLANMSHEIRTPMNGVIGSSALLAATPLSEIQHQYV 314
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
+ NS + L+++I+D+LD +KIE+G+L E VPF LH VLD ++ + S K +EL
Sbjct: 315 EILENSSRSLLTVIDDILDFSKIEAGKLVLEQVPFDLHTVLDGIIDMVSLNVTAKNLELV 374
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
V P ++GDPGR RQI+ NLVGN++KFT H +S+ + + + D+
Sbjct: 375 CAVDPATPTRLVGDPGRLRQILLNLVGNALKFTV---HGEISIDVTGETETDHDI----- 426
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
L F + D TG+G
Sbjct: 427 -----------------LIRFAIRD-------------------------------TGIG 438
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
+P + Q +F F QADS+T+R YGGTG+GL+IS+ LVELMGG IG S GS F FT
Sbjct: 439 VPPDKQGLLFKSFTQADSTTTRKYGGTGLGLAISKALVELMGGGIGMASNGMNGSVFRFT 498
Query: 901 VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVID-DKSIRAEVTRYHLQRLEMAVHVANS 959
F +++ PK ++ ++ G LV+D + + R+++ + L+ V A S
Sbjct: 499 SRFE--KQHIAAPKTER----AAQLTGRHVLVVDGNDTCRSKLAK-QLEYWGARVTEAGS 551
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP-- 1017
+ A L + S +V P +D +D Y + I + P
Sbjct: 552 GKKALHLLREYVSQAV-P------LDAAFFDA-------YTDGLDITEAKSMIDKFFPCL 597
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH 1077
K L+ S + G L KP++ L+ + + P+ G
Sbjct: 598 KTVLITRSGGPETYNLYNRMGFTARLKKPIKHFDLLDTLNTVLSGTPASGGRSSLPAAGD 657
Query: 1078 L----LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L + + IL+ +DN +N++V G +KK G + V + + MD
Sbjct: 658 LPVLDKQNELILLAEDNSINQQVVAGIMKKLGYDRLDIVGNGVEVIRAMQKTRYHLILMD 717
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMPE+DG +AT QIR SG S V PI+A+TA ++ E+
Sbjct: 718 IQMPELDGLEATRQIR-----------SGTSG------VIDPQTPIIALTAHAMKGDRER 760
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAV 1216
+ CGMD YV+KP + QL T +
Sbjct: 761 YLACGMDGYVTKPIDPVQLKTTL 783
>gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O395]
gi|227117816|ref|YP_002819712.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O395]
gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O395]
gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O395]
gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
Length = 1331
Score = 249 bits (635), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1089 NDHLSKPIEVDKFYQVLRHFL 1109
>gi|258625183|ref|ZP_05720099.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
mimicus VM603]
gi|258582558|gb|EEW07391.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
mimicus VM603]
Length = 1053
Score = 249 bits (635), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 194/635 (30%), Positives = 291/635 (45%), Gaps = 127/635 (20%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ E KA+AE A KS FLA +SHEIRTPMN ++GM + + TEL Q DY H+S
Sbjct: 283 ELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHSS 342
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIE+G+L E + F L +VL NV + KA KG+EL +
Sbjct: 343 ATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPRE 402
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV-----RSKVDVKDKVLE 781
+P L+G+ ++ Q V ++L ++ + ++ V +V E
Sbjct: 403 IPH--------------KLIGDPLRIGQ------VVINLVNNAVKFTEQGEISVSVQVGE 442
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
+ Q GRIKLL V DTG+G+
Sbjct: 443 R-----------------------------------------QPGRIKLLFNVSDTGIGM 461
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
+ +F F QAD ST+R YGGTG+GLSISR LVELM GEI S+P GS F+F
Sbjct: 462 TEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSKPDAGSCFTFNA 521
Query: 902 TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ 961
F E + Q+ VPDV +RAL++DD E+ + L L + A +
Sbjct: 522 WFDVDENQA---PHQKVVPDV--LGSIRALIVDDNDHAREILQDMLSMLAIPPETAANGV 576
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL----- 1016
A L + LV +D W+ G+E +R +
Sbjct: 577 EALRKLEQGVANG--KPFNLVFMD---WN-------------MPEMNGIETTRAIRHSFA 618
Query: 1017 ----PKIFLLATSISETDRDELKSD-GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
PK+ ++ T+ + D ++ S+ I LTKP+ S L SK
Sbjct: 619 AEHQPKV-VIVTAYDKDDLQQMISEIDICGFLTKPIGQSHLFDLLVNLFVGSKAQASVAA 677
Query: 1072 KPSLGHL---LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT----PP 1124
+ S H ++G ++L+ +DN +N+++A ++ +VT + G+ A+D L
Sbjct: 678 RISHHHEHGDIRGLRVLLTEDNEINQQIALELMEAKELVVTIANNGKEALDHLAHSLETQ 737
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
FD FMDLQMP MDG++A IR + P++AMTA
Sbjct: 738 QRFDIIFMDLQMPVMDGYEAARHIRSTPEHDD--------------------TPLIAMTA 777
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ E+C+ GM+D+VSKP + + LY +A++
Sbjct: 778 HAMVEERERCLSLGMNDHVSKPIDPDLLYRTIAKW 812
>gi|449143379|ref|ZP_21774216.1| hypothetical protein D908_00459 [Vibrio mimicus CAIM 602]
gi|449080990|gb|EMB51887.1| hypothetical protein D908_00459 [Vibrio mimicus CAIM 602]
Length = 1053
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 197/632 (31%), Positives = 291/632 (46%), Gaps = 119/632 (18%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ E KA+AE A KS FLA +SHEIRTPMN ++GM + + TEL Q DY H+
Sbjct: 282 QELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHS 341
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+ +IND+LD +KIE+G+L E + F L +VL NV + KA KG+EL +
Sbjct: 342 SATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPR 401
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P L+G+ ++ Q V ++L + N
Sbjct: 402 EIPH--------------KLIGDPLRIGQ------VVINLVN-----------------N 424
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME-QLGRIKLLVTVEDTGVGIPLE 844
+V K E ++ N E Q GRIKLL V DTG+G+ +
Sbjct: 425 AV--------------------KFTEQGEISVNVQVGERQPGRIKLLFNVSDTGIGMTEK 464
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
+F F QAD ST+R YGGTG+GLSISR LVELM GEI S+P GS F+F F
Sbjct: 465 QTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSQPDMGSCFTFNAWFD 524
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
E + Q+ VPDV +RAL++DD E+ + L L + A + A
Sbjct: 525 VDENQA---PHQKVVPDV--LGSIRALIVDDNDHAREILQDMLSMLAIPPETAANGVEAL 579
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL-------- 1016
L + LV +D W+ G+E +R +
Sbjct: 580 RKLEQGVANG--KPFNLVFMD---WN-------------MPEMNGIETTRAIRHSFAAEH 621
Query: 1017 -PKIFLLATSISETDRDELKSD-GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
PK+ ++ T+ + D ++ S+ I LTKP+ S L SK + S
Sbjct: 622 QPKV-VIVTAYDKDDLQQMISEIDICGFLTKPIGQSHLFDLLVNLFVGSKAQASVAARIS 680
Query: 1075 LGHL---LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT----PPHNF 1127
H ++G ++L+ +DN +N+++A ++ +VT + G+ A+D L F
Sbjct: 681 HHHEHGDIRGLRVLLTEDNEINQQIALELMEAKELVVTIANNGKEALDHLAHSLETQQRF 740
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D FMDLQMP MDG++A IR + P++AMTA +
Sbjct: 741 DIIFMDLQMPVMDGYEAARHIRSTPEHDD--------------------TPLIAMTAHAM 780
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+C+ GM+D+VSKP + + LY +A++
Sbjct: 781 VEERERCLSLGMNDHVSKPIDPDLLYRTIAKW 812
>gi|242238298|ref|YP_002986479.1| hybrid sensory histidine kinase BarA [Dickeya dadantii Ech703]
gi|242130355|gb|ACS84657.1| Hpt sensor hybrid histidine kinase [Dickeya dadantii Ech703]
Length = 918
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 189/624 (30%), Positives = 296/624 (47%), Gaps = 107/624 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L Q
Sbjct: 264 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQQ 323
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY QT S +L+++INDVLD +K+E+G+L E +PF LH+ LD V+ L + A++KG+
Sbjct: 324 DYLQTIERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVVMLLAHTAHEKGL 383
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VPE IGDP R +QIITNL+GN+IKFT ++G+I D+R
Sbjct: 384 ELTLNIQHDVPEQFIGDPLRLQQIITNLLGNAIKFT-EQGNI--------DIR------- 427
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+++ K ++ +L+ + ++DT
Sbjct: 428 --------------------------IEKRKQEQHQVLLE--------------IQIKDT 447
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+ G+TF
Sbjct: 448 GIGIAEIQQAQLFQAFRQADTSISRRHGGTGLGLVITQKLVREMGGDISFHSKLNQGTTF 507
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
T+ L+P + +G ++ A+ T L++ VH
Sbjct: 508 WCTLKL------QLNPHVLEPNHLFDMLKGKNLAYVESNPTAAQAT------LDILVHTP 555
Query: 958 NSMQLACSYLSDTCSTSVLPQLA--LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
L SY + + LP A ++L+ + + L ++ E R
Sbjct: 556 ----LTVSY---SPTLEQLPNRAFDILLVGVPISYRNTLLDFTPTIR--------EFCRL 600
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSL 1075
+ L S++E D ++LKS GI L+KP+ L+ Q++ S+ +
Sbjct: 601 ASNVILALPSLAEMDAEQLKSFGIHACLSKPITAPRLLTILQDNRLFSRSTAVATQPAPH 660
Query: 1076 GHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
L + ++ VDDN N ++ L++ + D G AV K + D MD+
Sbjct: 661 SQLERLSLTVMAVDDNPANLKLIGALLEEQVENIILCDNGAEAVAK-AKKNALDVILMDI 719
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP MDG QA+ I + N PI+A+TA + EQ
Sbjct: 720 QMPGMDGLQASELIHQIPLHRN--------------------TPIVAVTAHTMNGEREQL 759
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVAR 1218
+K GMDDY++KP ++ L + R
Sbjct: 760 LKSGMDDYLAKPIDEHMLRQVLLR 783
>gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae V52]
gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae V52]
Length = 1113
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 374 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 433
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 434 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 493
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 494 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 552
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 553 AQDKLDDLFDA---------------FSQADNSIT------------------------- 572
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 573 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 614
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 615 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 658
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 659 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 715
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 716 YGREINLEGENSKLVDALIVKPVNPSNLLDAI----VTSYGIEHVRHKTNEAHHNSRPNF 771
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 772 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 830
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 831 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 870
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 871 NDHLSKPIEVDKFYQVLRHFL 891
>gi|271501843|ref|YP_003334869.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
gi|270345398|gb|ACZ78163.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
Length = 922
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 186/606 (30%), Positives = 296/606 (48%), Gaps = 109/606 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + + T+L Q DY QT S +L+
Sbjct: 280 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQLTTTQKDYLQTIERSANNLL 339
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++INDVLD +K+E+G+L E +PF LH+ LD V+ L + A++KG+EL + + VPE
Sbjct: 340 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQF 399
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +QIITNL+GN+IKFT ++G+I D+R +EK
Sbjct: 400 VGDPLRLQQIITNLLGNAIKFT-EQGNI--------DIR---------IEK--------- 432
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+ EN ++L L + ++DTG+GI Q ++F
Sbjct: 433 ----------------RKQENLQVL-------------LEIQIKDTGIGIAEAQQTQLFQ 463
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR +GGTG+GL I++ LV MGG+I F S+ G+TF TV + + L
Sbjct: 464 AFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKLNQGTTFWCTVNL-QLNPHML 522
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+P + + P +G ++ A+ T L++ VH L SY +
Sbjct: 523 EPDY-HFAP----LQGKHLAYVETNPAAAQAT------LDILVHTP----LTVSY---SP 564
Query: 972 STSVLPQ--LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
+ LP+ ++LI ++ + L ++ + R ++ L S++E
Sbjct: 565 TPEQLPERTFDILLIGVPIYYRNTLLDFTPQIR--------DFCRLASRVILALPSLAEI 616
Query: 1030 DRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQ---QKRKKPSLGHLLKGKQILV 1086
+ ++LK+ GI L+KP+ L+ Q+ S+ Q P+ ++
Sbjct: 617 EAEQLKAFGIHASLSKPITAPRLLSLLQDTNLFSQDQHEEVQALPPPATSFQRLPLSVMA 676
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
VDDN N ++ L++ + + G A+ + + D MD+QMP MDG QA+
Sbjct: 677 VDDNPANLKLIGALLEEQVENIILCESGADAIAR-AQENRLDIILMDIQMPGMDGLQASE 735
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
IR L H PI+A+TA + E ++ GMDDY+SKP
Sbjct: 736 HIRRLPQH--------------------AHTPIVAVTAHTMSGEREVLLQAGMDDYLSKP 775
Query: 1207 FEDEQL 1212
+++ L
Sbjct: 776 IDEQML 781
>gi|148977989|ref|ZP_01814541.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
gi|145962809|gb|EDK28082.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
Length = 1224
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 208/659 (31%), Positives = 315/659 (47%), Gaps = 123/659 (18%)
Query: 588 GHIFHAAINRIAQVENDYHEMMELKARA--------EAADVAKSQFLATVSHEIRTPMNG 639
G IF A I + + N H +E A + +AA+ AKS FLA +SHEIRTPMN
Sbjct: 438 GVIFFAIILLMGLLANKAHSALEAFAHSLAEARDEADAANQAKSDFLANMSHEIRTPMNA 497
Query: 640 VLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699
++GM + + T+L AQ +Y S L+ LIND+LD +KIE+G+L+ E V FHL +
Sbjct: 498 IIGMSYLALKTDLTKAQRNYIHKVKLSSDTLLGLINDILDFSKIEAGKLDIENVDFHLEN 557
Query: 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHI 759
VLDN+ +L +A+++G+EL I V VP +IGDP R QI+ NL N++KFT+ KG +
Sbjct: 558 VLDNITNLVGLRASERGLELLIQVDRDVPTNLIGDPLRLGQILINLSNNAVKFTE-KGEV 616
Query: 760 FVSVHLA----DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKM 815
+S+ +A DD++ K V D + Q ++DK++N F
Sbjct: 617 KISILVAERHGDDIKLKFSVSD----SGIGMTQEQADKLFN---------------KFTQ 657
Query: 816 LDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISR 875
D++ T R YGGTG+GL+IS+
Sbjct: 658 ADSSTT----------------------------------------RKYGGTGLGLAISK 677
Query: 876 CLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDD 935
L +LMGG+I +E G GSTFSFT++ R S + V S L+ LV+DD
Sbjct: 678 ELSQLMGGDIQVSTELGKGSTFSFTIS----TRVSHSITQNRIVVPAS-INHLKVLVVDD 732
Query: 936 KSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD--KEI 993
+ + L+ L++ + S+ A L SV L++ D W K
Sbjct: 733 NASARLIVGDILESLKLTPTLCASVDEAIVELHSADDKSV--PFDLIISD---WKMPKRD 787
Query: 994 GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDG--IVTLLTKPLRLS- 1050
G+ L L + GL +SR PKI +L E + + G I ++L KP+ S
Sbjct: 788 GVDLLAELNK-----GLSLSR-APKIMMLTAYGREELTEAISERGFKIPSILDKPITSSH 841
Query: 1051 -----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHG 1105
V + D S +L+Q+ + ++ L G IL+V+DN +N+ +A L+
Sbjct: 842 LYDSIVSLYGLDSDRVSRSELEQQNQLANVQQ-LAGANILLVEDNEINQELATELLEGQQ 900
Query: 1106 AIVTCVDCGRAAVD---KLTPPHN-FDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161
VT + G+ A++ K T FD MD QMP MDG++AT IRH EI +
Sbjct: 901 IKVTVAENGQQAIELYHKATADGAPFDGILMDCQMPVMDGYEATQYIRH---EIKD---- 953
Query: 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
PI+AMTA+V++ E+ + GM D ++KP + ++ +A +
Sbjct: 954 -------------VKTPIIAMTANVMERDKEKALSSGMSDIIAKPIDVGSMFATLANWI 999
>gi|414070614|ref|ZP_11406596.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
gi|410806922|gb|EKS12906.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
Length = 1098
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 191/630 (30%), Positives = 313/630 (49%), Gaps = 105/630 (16%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
H ++E KA AE A++AKS+FLA++SHEIRTPMNGVLGML ++D+ L+ Q + A N
Sbjct: 554 HSLIEAKALAEQANIAKSEFLASMSHEIRTPMNGVLGMLNFILDSPLNEKQQYQTRIALN 613
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+++IND+LD +K+++G+LE E + F+LH +L + L +++A KGIEL + ++D
Sbjct: 614 SANSLLNIINDILDFSKVDAGKLELEELEFNLHAMLGDFLETVAAQAYSKGIELILDITD 673
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VIGDPGR RQI+TNLV N++KFT H+ +V + K++ + N
Sbjct: 674 IKYPFVIGDPGRLRQILTNLVNNALKFT----HV-----------GEVQIIAKLIPTNGN 718
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
++ +V +T G PV + K +++F
Sbjct: 719 EIRFNC-QVKDTGIGIPVEQQAKLFKSFS------------------------------- 746
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q DSST+R YGGTG+GL+I + L LM GE+ S+ GS F F +T +
Sbjct: 747 ---------QVDSSTTRKYGGTGLGLAIVKKLCNLMQGEVEVKSDENKGSNFIFDITLKK 797
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
G+ K ++ +P + + G+ + +A V + L + V +++S ++A +
Sbjct: 798 GK------KTEKVMPPI-DITGINIQIACSNKSQANVLQKQLTQWGAIVTISSSAKIALN 850
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
+ P +V+ID + D GL L + L + NL +L T+
Sbjct: 851 TYEQFYTQHAHP-FDIVIIDTKLSDSN-GLTLGKTINDL----NLLSTANL----VLMTT 900
Query: 1026 ISETDRDE-LKSDGIVTLLTKPLR----LSVLIGCFQE------DPESSKKLQQKRKKPS 1074
I + + +E K +G KP+ ++L C E + + + +K P+
Sbjct: 901 IDQFETNEHYKQNGFTAYFPKPMTTKDIFNLLTKCLPERNTLHSENTQTCTITEKPLGPN 960
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHN---FDAC 1130
+ +IL+ +DN +N+ VA LKK G ++V G+ +D L + +
Sbjct: 961 DIVWREDIRILLAEDNQINQIVAATTLKKMGISVVDIATNGKEVLDYLDQKNTIEPYSLI 1020
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD QMP MDG+QAT IR+ E A +++A + I+AMTA+ +
Sbjct: 1021 LMDCQMPVMDGYQATTLIRNNE-------ARDKANA----------ITIIAMTANAMTGD 1063
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+C+ GMDDY+SKP + L+ + ++
Sbjct: 1064 KTKCLDSGMDDYISKPIAQDILFEKLLKWL 1093
>gi|258622445|ref|ZP_05717467.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|424808569|ref|ZP_18233966.1| hypothetical protein SX4_2564 [Vibrio mimicus SX-4]
gi|258585145|gb|EEW09872.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|342324134|gb|EGU19916.1| hypothetical protein SX4_2564 [Vibrio mimicus SX-4]
Length = 1053
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 196/636 (30%), Positives = 294/636 (46%), Gaps = 129/636 (20%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ E KA+AE A KS FLA +SHEIRTPMN ++GM + + TEL Q DY H+S
Sbjct: 283 ELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHSS 342
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIE+G+L E + F L +VL NV + KA KG+EL +
Sbjct: 343 ATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPRE 402
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV-----RSKVDVKDKVLE 781
+P L+G+ ++ Q V ++L ++ + ++ V +V E
Sbjct: 403 IPH--------------KLIGDPLRIGQ------VVINLVNNAVKFTEQGEISVSVQVGE 442
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
+ Q GRIKLL V DTG+G+
Sbjct: 443 R-----------------------------------------QPGRIKLLFNVSDTGIGM 461
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
+ +F F QAD ST+R YGGTG+GLSISR LVELM GEI S+P GS F+F
Sbjct: 462 TEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSKPDAGSCFTFNA 521
Query: 902 TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ 961
F E + Q+ VPDV +RAL++DD H +Q
Sbjct: 522 WFDVDENQA---PHQKVVPDV--LGSIRALIVDDND-----------------HAREILQ 559
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWD-KEIGLVLHYMLKQQRRKGGLEISRNL---- 1016
S L+ T+ AL +++ V + K LV +M G+E +R +
Sbjct: 560 DMLSMLAIPPETAANGVEALRKLEQGVANGKPFNLV--FMDWNMPEMNGIETTRAIRHSF 617
Query: 1017 -----PKIFLLATSISETDRDELKSD-GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKR 1070
PK+ ++ T+ + D ++ S+ I LTKP+ S L SK
Sbjct: 618 AAEHQPKV-VIVTAYDKDDLQQMISEIDICGFLTKPIGQSHLFDLLVNLFVGSKAQASVA 676
Query: 1071 KKPSLGHL---LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT----P 1123
+ S H ++G ++L+ +DN +N+++A ++ +VT + G+ A+D L
Sbjct: 677 ARISHHHEHGDIRGLRVLLTEDNEINQQIALELMEAKELVVTIANNGKEALDHLAHSLET 736
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
FD FMDLQMP MDG++A IR + P++AMT
Sbjct: 737 QQRFDIIFMDLQMPVMDGYEAARHIRSTPEHDD--------------------TPLIAMT 776
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
A + E+C+ GM+D+VSKP + + LY +A++
Sbjct: 777 AHAMVEERERCLSLGMNDHVSKPIDPDLLYRTIAKW 812
>gi|429887218|ref|ZP_19368743.1| CheY-like receiver [Vibrio cholerae PS15]
gi|429225870|gb|EKY32068.1| CheY-like receiver [Vibrio cholerae PS15]
Length = 1331
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDMTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1089 NDHLSKPIEVDKFYQVLRHFL 1109
>gi|262173308|ref|ZP_06040985.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
gi|261890666|gb|EEY36653.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
Length = 1053
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 194/635 (30%), Positives = 291/635 (45%), Gaps = 127/635 (20%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ E KA+AE A KS FLA +SHEIRTPMN ++GM + + TEL Q DY H+S
Sbjct: 283 ELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHSS 342
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIE+G+L E + F L +VL NV + KA KG+EL +
Sbjct: 343 ATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPRE 402
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV-----RSKVDVKDKVLE 781
+P L+G+ ++ Q V ++L ++ + ++ V +V E
Sbjct: 403 IPH--------------KLIGDPLRIGQ------VVINLVNNAVKFTEQGEISVSVQVGE 442
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
+ Q GRIKLL V DTG+G+
Sbjct: 443 R-----------------------------------------QPGRIKLLFNVSDTGIGM 461
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
+ +F F QAD ST+R YGGTG+GLSISR LVELM GEI S+P GS F+F
Sbjct: 462 TEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSKPDAGSCFTFNA 521
Query: 902 TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ 961
F E + Q+ VPDV +RAL++DD E+ + L L + A +
Sbjct: 522 WFDVDENQA---PHQKVVPDV--LGSIRALIVDDNDHAREILQDMLSMLAIPPETAANGV 576
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL----- 1016
A L + LV +D W+ G+E +R +
Sbjct: 577 EALRKLEQGVANG--KPFNLVFMD---WN-------------MPEMNGIETTRAIRHSFA 618
Query: 1017 ----PKIFLLATSISETDRDELKSD-GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
PK+ ++ T+ + D ++ S+ I LTKP+ S L SK
Sbjct: 619 AEHQPKV-VIVTAYDKDDLQQMISEIDICGFLTKPIGQSHLFDLLVNLFVGSKAQASVAA 677
Query: 1072 KPSLGHL---LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT----PP 1124
+ S H ++G ++L+ +DN +N+++A ++ +VT + G+ A+D L
Sbjct: 678 RISHHHEHGDIRGLRVLLTEDNEINQQIALELMEAKELVVTIANNGKEALDHLAHSLETQ 737
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
FD FMDLQMP MDG++A IR + P++AMTA
Sbjct: 738 QRFDIIFMDLQMPVMDGYEAARHIRSTPEHDD--------------------TPLIAMTA 777
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ E+C+ GM+D+VSKP + + LY +A++
Sbjct: 778 HAMVEERERCLSLGMNDHVSKPIDPDLLYRTIAKW 812
>gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 2740-80]
gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae NCTC 8457]
gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae M66-2]
gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MAK 757]
gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 2740-80]
gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae NCTC 8457]
gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae M66-2]
gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MAK 757]
Length = 1331
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1089 NDHLSKPIEVDKFYQVLRHFL 1109
>gi|390448937|ref|ZP_10234551.1| hybrid sensory histidine kinase [Nitratireductor aquibiodomus RA22]
gi|389665252|gb|EIM76726.1| hybrid sensory histidine kinase [Nitratireductor aquibiodomus RA22]
Length = 945
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 205/672 (30%), Positives = 306/672 (45%), Gaps = 126/672 (18%)
Query: 571 WTAINASIGVVVITLLVG-HIFHAAINRIAQVENDYHE----MMELKARAEAADVAKSQF 625
W + +V +LL+ IF I RI++ + H + K +A++AD KS+F
Sbjct: 217 WGLFGVAGAMVGASLLLALRIFEPMIRRISKAHQELHSANISLAAEKIKAQSADRTKSEF 276
Query: 626 LATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIES 685
LA +SHEIRTPMNGV+GM ++L T LD Q + SG L+++IND+LD +KI++
Sbjct: 277 LANMSHEIRTPMNGVMGMAELLARTNLDQRQAMFVDVIVKSGTALLTIINDILDFSKIDA 336
Query: 686 GRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNL 745
G+L+ + PF + + +++V +L SS+ +K +EL + V + IGD GRFRQI TNL
Sbjct: 337 GQLKLDEAPFRIREAIEDVAALVSSRVAEKNLELIVRVDPELSASFIGDVGRFRQIATNL 396
Query: 746 VGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVD 805
VGN++KFT+ +GH+ + V K+ + + +V +T G P
Sbjct: 397 VGNAVKFTE-RGHVLIDVS----------------GKTKGNTAQVTVRVEDTGIGIPPDK 439
Query: 806 RWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYG 865
++ F AQV DSS++R +
Sbjct: 440 LEAVFDKF-------------------------------AQV---------DSSSTRRHE 459
Query: 866 GTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP-DVSE 924
GTG+GL+I+ L ELMGG I SE G GSTF FT+ F N++ Q P DVS
Sbjct: 460 GTGLGLAIAVKLAELMGGSIEATSEVGKGSTFVFTLPFAIDTANAI----QATAPVDVS- 514
Query: 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLI 984
G R VIDD +I E+ L A S + ++L + ++ V++
Sbjct: 515 --GARVFVIDDNAINREILLEQLNSWGFECAAAESGAVGLAFLQRSAQLDA--RVDCVIL 570
Query: 985 DKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSD-GIVTLL 1043
D + D G + +K G+ + +L TS+ +TD L S+ GI L
Sbjct: 571 DYQMPDMN-GADVAKKIKADPALAGIPL--------VLLTSVDQTDTARLVSECGIAAHL 621
Query: 1044 TKPLRLSVLIGCFQE--------------DPESSKKLQQKRKKPSLGHLLKGKQ------ 1083
KP R S+L+ D + K Q L L G +
Sbjct: 622 NKPTRSSMLLETLVSVMQVSRALPDQPLGDAHAPAKPIQIHASTPLERGLSGSRGANGPL 681
Query: 1084 -ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP--PHNFDACFMDLQMPEMD 1140
+LV +DN VN+ V L G G+ AV+ L P MD+ MPEM+
Sbjct: 682 DVLVAEDNEVNQLVFSQILDGMGLKYRIAGNGKTAVEMLRTLKPR---LVLMDVSMPEMN 738
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
GF+AT IR E ASG + PI+ +TA ++ E+C+ GMD
Sbjct: 739 GFEATAAIREHE------AASGT------------YTPIIGITAHALRGDREKCLGAGMD 780
Query: 1201 DYVSKPFEDEQL 1212
DY+ KP ++L
Sbjct: 781 DYLPKPISPQKL 792
>gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 623-39]
gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 623-39]
Length = 1331
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 287/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGHITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHT-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1089 NDHLSKPIEVDKFYQVLRHFL 1109
>gi|433772783|ref|YP_007303250.1| signal transduction histidine kinase [Mesorhizobium australicum
WSM2073]
gi|433664798|gb|AGB43874.1| signal transduction histidine kinase [Mesorhizobium australicum
WSM2073]
Length = 779
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 190/637 (29%), Positives = 287/637 (45%), Gaps = 138/637 (21%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L TEL+ Q + SG L+++
Sbjct: 226 KAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTELNPRQKTFTDVIVKSGNALLTI 285
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IND+LD +KI +G+L + PF L + +++V +L S++ +K +EL + V R+P V+G
Sbjct: 286 INDILDFSKINAGQLTLDPAPFRLSEAVEDVATLVSARVAEKNLELIVRVDPRLPAYVVG 345
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
D GRFRQI+TNLVGN++KFT+ KGH+ + V +++N V +
Sbjct: 346 DAGRFRQIVTNLVGNAVKFTE-KGHVLIDVG----------------GETVNDVVQLKLR 388
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
V +T G P +E F +D ++T
Sbjct: 389 VEDTGIGIPAEKLQNVFEKFAQVDGSST-------------------------------- 416
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
R + GTG+GL+I+ LV+LM G+IG SE G GS F F V + D
Sbjct: 417 --------RRHEGTGLGLAIAARLVDLMAGKIGVESEIGRGSVFWFAVPLPVHRAEARD- 467
Query: 914 KWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCS 972
VP DV+ G R LVIDD + E+ L+ A S + ++L C
Sbjct: 468 ---AIVPVDVT---GARVLVIDDNPVNREILLEQLRSWSFDCAAAESGAVGLAFLDRACQ 521
Query: 973 TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
+ +++D + V + R +P + L TS+ + D
Sbjct: 522 LGA--SVDCIILDYQMPGMNGADVARAIAADSRLS-------TIPVVIL--TSVDQVDFG 570
Query: 1033 ELKSD-GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK--------- 1082
++ D GI LTKP R +VL+G +Q+ R + H ++
Sbjct: 571 KMIIDFGISAHLTKPARSAVLLGTV------ISVIQKARSQVGKAHFIREPIQPMPQPAP 624
Query: 1083 ---------------------------QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
IL+ +DN VN+ V L G GR
Sbjct: 625 PAFTVIRGPAMPIAAVPESNAAPNSPIDILIAEDNDVNQMVFGQILNGLGLSYRIAGNGR 684
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
AV+ H MD+ MPEM+G++AT IR +E +SG
Sbjct: 685 TAVEMYRSLHP-RLVLMDVSMPEMNGYEATRAIRAIEA------SSG------------G 725
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
H+PI+ +TA ++ ++C++ GMDDY+ KP ++L
Sbjct: 726 HIPIIGVTAHALKGDRDKCIEAGMDDYLPKPVSPDRL 762
>gi|423686824|ref|ZP_17661632.1| GacS hybrid sensory histidine kinase [Vibrio fischeri SR5]
gi|371494892|gb|EHN70490.1| GacS hybrid sensory histidine kinase [Vibrio fischeri SR5]
Length = 931
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 202/683 (29%), Positives = 304/683 (44%), Gaps = 129/683 (18%)
Query: 552 DPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMME- 610
D R+ + R + K + I + I+L H+ I Q +D E +E
Sbjct: 211 DRIRRGHLDVRIENKLHGELDTLKNGINAMAISLSEYHV--EMQQSIDQATSDLRETLEQ 268
Query: 611 ----------LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T L Q DY
Sbjct: 269 LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTSLSENQQDYL 328
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
QT S +L+++IND+LD +K+E+G+L E +PF D LD V+SL + A++KG+E+
Sbjct: 329 QTIERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEIT 388
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
+ + RVP +IGDP R +Q++ NLVGN+IKFT+ KG+I +SV
Sbjct: 389 LKIDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTE-KGNIDISVE---------------- 431
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
++H +D + L V DTG+G
Sbjct: 432 ------LKHLTDDY---------------------------------VDLQFVVRDTGIG 452
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
I Q ++F F QAD+S SR YGGTG+GL I++ L+ MGGEIG S GSTF FT
Sbjct: 453 ISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFT 512
Query: 901 VTFTEGERNSLD-PKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
+ N D P ++ D+++ + L+I+ A + +
Sbjct: 513 IRM-----NPTDLPMLNEH--DITQLERKKLLLIEPNMQSASILQ--------------- 550
Query: 960 MQLACSYLSDTCSTSVLPQLA----LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
Q S+ S LP++ LI K + M Q +S N
Sbjct: 551 -QQFISHGVFVTYRSTLPEIIEPHDYALISLSSNSKPSIETIQEMTSQ--------LSAN 601
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF--QEDPESSKKLQQKRKKP 1073
I + S DEL +T L+KP L+ ++D + +L
Sbjct: 602 CSTIIVGLPSTELALTDELNQFSHITCLSKPFAKKKLLDALLVEKDRQPVPELPDLMAHA 661
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
S L K ++ VDDN N ++ L + V D G AV + T H FD MD
Sbjct: 662 SEEQKLPIK-VMAVDDNPANLKLISALLSEQVETVITCDNGLDAVQQATEQH-FDIILMD 719
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG A +IR + +N Q P++A+TA ++ E+
Sbjct: 720 IQMPKMDGVMACKEIR--KTALNAQ------------------TPVVAVTAHAMEGERER 759
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAV 1216
+ GMDDY++KP E+ L +
Sbjct: 760 LISEGMDDYLTKPIEEHVLQQVI 782
>gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
11109]
gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
11109]
Length = 1121
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 192/623 (30%), Positives = 295/623 (47%), Gaps = 100/623 (16%)
Query: 605 YHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAH 664
Y E E + AEAA+ AKS FLAT+SHEIRTPMNGV+GM +L+DT L+ Q ++ +T
Sbjct: 467 YAEASEARTAAEAANEAKSTFLATMSHEIRTPMNGVIGMTNLLLDTPLNEEQREFCETIR 526
Query: 665 NSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724
SG+ L+++IND+LD +KIE+G++E E PF L + L++ L L + A QKG+EL +V
Sbjct: 527 GSGEALLTIINDILDFSKIEAGKMELEHQPFDLRECLESALDLIVTPAQQKGLELVYHVD 586
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSL 784
+VP + GD R RQI+ NL+ N++KFT+ +G I ++V D + +L +
Sbjct: 587 KQVPATIAGDVTRLRQILLNLLNNAVKFTE-QGEISLTVRGEDGPDAAALPPGSMLLRF- 644
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
V ++ G P + +++F +D + T
Sbjct: 645 --------SVADSGIGIPPDRLNRMFQSFSQIDASTT----------------------- 673
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE--PGTGSTFSFTVT 902
R YGGTG+GL+IS+ L E+MGG + S+ PG GSTF +
Sbjct: 674 -----------------RKYGGTGLGLAISKRLSEMMGGRLWVESKGVPGKGSTFHLLIR 716
Query: 903 FTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
TE + + + + + G R L +DD + Q M V + S Q
Sbjct: 717 -TEPVAMPVITR-HELLHRQPQLAGKRLLAVDDNDTNRRILVLQSQSWGMLVRDSRSPQE 774
Query: 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
A ++ L ++D + D GL+L ++ R NLP +
Sbjct: 775 ALGWIKRG------DPFDLAILDMQMPDMN-GLMLGREIRAHR--------PNLPLVLYS 819
Query: 1023 ATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKK---PSL 1075
+ E D + LTKP++ S L+ F P +++K + K P L
Sbjct: 820 SLGCREVGPD---AALFAFQLTKPIKPSQLYDALLTIFSAQPAATRKHDEAVKSQIDPDL 876
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
L K IL+ +DN VN++VA L + G V G A++ + ++D MD+Q
Sbjct: 877 ATRLPLK-ILLAEDNAVNQKVALRLLARLGYRADVVANGLEALEAVR-RQSYDVVLMDVQ 934
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MPEMDG +A+ +I+ G G I+A+TAD +Q E+C+
Sbjct: 935 MPEMDGLEASRRIK-------------------LGEAGRAAPRIIALTADAMQGDREKCL 975
Query: 1196 KCGMDDYVSKPFEDEQLYTAVAR 1218
GMDDY++KP + E L A+ R
Sbjct: 976 AAGMDDYLTKPIKVEALVDALTR 998
>gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MZO-2]
gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MZO-2]
Length = 1331
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1089 NDHLSKPIEVDKFYQVLRHFL 1109
>gi|423063248|ref|ZP_17052038.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
gi|406715370|gb|EKD10526.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
Length = 1493
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 204/685 (29%), Positives = 310/685 (45%), Gaps = 122/685 (17%)
Query: 581 VVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGV 640
V IT+ + + +E + E K AE A AKS+FLAT+SHEIRTPMN V
Sbjct: 691 VGITIAQAKLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAV 750
Query: 641 LGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700
+GM +L+D EL Q D+ +T SG L+++IND+LD +KIESG+LE E PF L +
Sbjct: 751 IGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNC 810
Query: 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIF 760
L+ L L S +A++KG+ELA + P+ ++ D R RQ++ NLV N+IKFT + G +
Sbjct: 811 LEECLELLSGRADEKGLELAYIIDPSTPKTILVDVTRLRQVLVNLVSNAIKFTSE-GEVI 869
Query: 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTN 820
++V A +K DVK KSD T S +
Sbjct: 870 LAVK-ATHPDAKKDVK-------------KSDDSDFTESHY------------------- 896
Query: 821 TMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVEL 880
L V DTG+GIP + R+F F Q D+ST+R YGGTG+GL+IS+ L +L
Sbjct: 897 --------VLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQL 948
Query: 881 MGGEIGFVS----------------------------EPGT---GSTFSFTVTFTEGERN 909
M G++ S P GS F FT+ +
Sbjct: 949 MNGKMWVASWVNLLDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIVCSGFN-- 1006
Query: 910 SLDPKWQQYVPDVSEF-----RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
PD+ EF G + L+++ I ++ ++ M + A
Sbjct: 1007 ---------TPDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKTGADAL 1057
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
L D P L L+++ ++ D + L ++Q ++ R P ++
Sbjct: 1058 KVLHDN------PGLDLIILGINLPDMDEA-TLASRIRQLEKQMIAGKYRQKPFNLVMFN 1110
Query: 1025 SISETD---RDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKK----P 1073
S T+ R E + + L+ KPL+ S L+ F + K K + P
Sbjct: 1111 YASNTEVLRRLEAQGVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGYDP 1170
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
++ +IL+ +DN+ N++VA L++ G G +D L +D MD
Sbjct: 1171 AIPQPHANLRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALN-RQQYDVILMD 1229
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMPEMDG +A+ I A+ ++M G I+AMTA+ +Q E
Sbjct: 1230 VQMPEMDGLEASKHI----------CAAYSDGSDM----GPRKPRIIAMTANAMQGDREM 1275
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVAR 1218
C+ GMDDY++KP E L A+A+
Sbjct: 1276 CLNAGMDDYITKPVRREALAEALAK 1300
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 1073 PSLGHL----LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
P LG L GK++L+V+ + +N+++ +K G + V G A+ L D
Sbjct: 1008 PDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKTGADALKVLHDNPGLD 1067
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
+ + +P+MD +IR LE +Q+ +G+ + F V + A +V++
Sbjct: 1068 LIILGINLPDMDEATLASRIRQLE----KQMIAGKYRQKPFNLVMFNY----ASNTEVLR 1119
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
Q + V+KP + Q Y + + F
Sbjct: 1120 RLEAQGVNVA--GLVNKPLKQSQFYNTLMQIF 1149
>gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231]
gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231]
Length = 715
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 200/622 (32%), Positives = 300/622 (48%), Gaps = 99/622 (15%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
RI ++ E+ K A+AA VAK FLA +SHEIRTPMN ++GM ++++DT+L Q
Sbjct: 39 RIQDLKKAGEELRHAKEAAQAASVAKGNFLANMSHEIRTPMNAIIGMTELVLDTDLTDTQ 98
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
+Y +G L+SL+ND+LD +KIE+G+LE E F L + L + + + +A+ KG
Sbjct: 99 REYLAMVREAGNSLLSLLNDILDFSKIEAGKLELESHVFGLRERLGDAMKSLAFRAHGKG 158
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
IELA +V VP+ L+G++ + Q + V+L
Sbjct: 159 IELACHVHPEVPDA--------------LLGDASRLRQ------IVVNLV---------- 188
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
+ + T G V+D ++E+ TN L TV D
Sbjct: 189 --------------GNAIKFTTQGEVVLD--VAYES-----PTNNAANLH-----FTVTD 222
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+GIP + IF F QAD ST+R +GGTG+GL+IS LV+LMGG I SE G GS
Sbjct: 223 TGIGIPTDKLESIFDSFEQADMSTTRQFGGTGLGLAISSRLVKLMGGRIWAESELGCGSD 282
Query: 897 FSFTVTFT-EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH 955
F FT+ F+ ER + + PD +RAL++DD + + L M
Sbjct: 283 FHFTMKFSLAAERPAEAQPLEAVFPD-----NVRALIVDDNATNRLILNEMLGNWGMQAT 337
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
++ + L T + P LV+ D + E G L +KQ + +++
Sbjct: 338 SVAAVAEGLAALR-TAYAARRP-FRLVITDCHM-PGEDGFDLAEKIKQDGQLSDIQL--- 391
Query: 1016 LPKIFLLATSISE-TDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS 1074
++ TS SE D + G+V L KP++ S L S+ LQ ++
Sbjct: 392 -----VMLTSGSEPGDIAHCEQLGVVAHLLKPVKQSELFDAIG----SALGLQVAEEEAP 442
Query: 1075 LGHL--LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
L + LK +IL+ +D++VN+++A LKKHG V + G+ AV + FD M
Sbjct: 443 LDEVQQLKALRILLAEDSIVNQKLALALLKKHGHDVVVANNGKEAV-AVFDRDRFDLVLM 501
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMPEMDG +AT +R E + HVPI+A+TA ++ E
Sbjct: 502 DVQMPEMDGLEATAAVRAKEANSDR------------------HVPIIALTAHAMKGDRE 543
Query: 1193 QCMKCGMDDYVSKPFEDEQLYT 1214
QC++ GMD YVSKP +L+
Sbjct: 544 QCLEAGMDGYVSKPIRAPELFN 565
>gi|444378378|ref|ZP_21177577.1| hypothetical protein D515_2320 [Enterovibrio sp. AK16]
gi|443677475|gb|ELT84157.1| hypothetical protein D515_2320 [Enterovibrio sp. AK16]
Length = 773
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 186/660 (28%), Positives = 301/660 (45%), Gaps = 116/660 (17%)
Query: 568 PVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLA 627
P P N +G ++TL + + I ++ E+ K +AE A+ KS+FLA
Sbjct: 196 PQPIERPNKKMGEELVTL-----YTQYNDTIEKMREYSAELKNAKIQAEMANQKKSEFLA 250
Query: 628 TVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR 687
+SHEIRTPMNG++GM +L T LD Q ++ + S L+ +IND+LD +KIE+G+
Sbjct: 251 NMSHEIRTPMNGIIGMASLLKGTRLDDEQREFIEMLETSSLSLLDIINDILDFSKIEAGK 310
Query: 688 LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVG 747
LE +FV +L ++ ++ LF + +KG+E + + +++GD R RQ++ NLVG
Sbjct: 311 LELDFVELNLFELCKDIEHLFRLRTKEKGLEFECSLDQDLSPLLMGDAPRLRQVMINLVG 370
Query: 748 NSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRW 807
N++KFTQ G + V + D+ ++ V+ V + + K D ++
Sbjct: 371 NAVKFTQ-SGSVRVDIQQVDEAGDQITVRFDVKDTGIGIPADKLDTIF------------ 417
Query: 808 KSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGT 867
E F+ QAD S SR +GGT
Sbjct: 418 ---EKFE----------------------------------------QADGSMSRNFGGT 434
Query: 868 GIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927
G+GL+IS +VELMGG I S+ G GS F FTVTF + P D F
Sbjct: 435 GLGLAISSQIVELMGGHIEVESQEGEGSRFFFTVTFERAQMPEATPV------DALLFSD 488
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
L++DD + +T L L V + A +++ T+ +V++DK
Sbjct: 489 AAMLLVDDSRLNMRITSAQLGNLGCQVTCCVHPEDAEEMIAERIDTA--KPFKIVILDKL 546
Query: 988 VWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPL 1047
+ + + G + L+++ + P + ++ + D +L+S I L++P
Sbjct: 547 MPNSD-GFSIASKLRKR-------FGKRCPSLMMITAAPEVHDNVKLESFNIEGYLSRPY 598
Query: 1048 RLSVL--------------IGCFQEDPESSKKLQQKRKKPSLGH-LLKGKQILVVDDNMV 1092
+ + L +G S+ K +Q K+ L ++LVV+D +V
Sbjct: 599 KFNDLRNHLTRILRGQQAKLGVIS---MSAHKEEQASKEIGLAEPSTYSGRVLVVEDTLV 655
Query: 1093 NRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLE 1152
N+RV + L K G V + G+ A+D FD FMD QMP MDG+QA+ +R E
Sbjct: 656 NQRVTQAMLGKLGVEVVVAENGQVAID-YCKEGMFDLIFMDCQMPIMDGYQASRLLREHE 714
Query: 1153 NEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
H PI+A+TA+ ++C++CGMDDY++KP +L
Sbjct: 715 YA--------------------PHTPIVALTANATAQDRDECLRCGMDDYIAKPVSKAEL 754
>gi|333925609|ref|YP_004499188.1| multi-sensor hybrid histidine kinase [Serratia sp. AS12]
gi|333930562|ref|YP_004504140.1| multi-sensor hybrid histidine kinase [Serratia plymuthica AS9]
gi|386327433|ref|YP_006023603.1| multi-sensor hybrid histidine kinase [Serratia sp. AS13]
gi|333472169|gb|AEF43879.1| multi-sensor hybrid histidine kinase [Serratia plymuthica AS9]
gi|333489669|gb|AEF48831.1| multi-sensor hybrid histidine kinase [Serratia sp. AS12]
gi|333959766|gb|AEG26539.1| multi-sensor hybrid histidine kinase [Serratia sp. AS13]
Length = 908
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 188/660 (28%), Positives = 304/660 (46%), Gaps = 139/660 (21%)
Query: 589 HIFHAAINRIAQVENDYHEMME--------------------------LKARAEAADVAK 622
H+ IN +A YHE M+ K RA+ A K
Sbjct: 233 HMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 292
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S+FLA +SHE+RTP+NGV+G + ++ TE+ Q DY QT S +L+++INDVLD +K
Sbjct: 293 SEFLANMSHELRTPLNGVIGFTRQMLKTEMSVTQTDYLQTIERSANNLLTIINDVLDFSK 352
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
+E+G+L E +PF L + LD V+ L + A++KG+EL + V + VPE VIGD R +QII
Sbjct: 353 LEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDSLRLQQII 412
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
TNL+GN+IKFT + G+I D+R + L +Q +
Sbjct: 413 TNLLGNAIKFT-ETGNI--------DIRVE-----------LRGLQER------------ 440
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
+++L V + DTG+GI Q ++F F QAD+S SR
Sbjct: 441 ------------------------QVELEVQIHDTGIGISERQQSQLFQAFRQADASISR 476
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922
+GGTG+GL I++ LV+ MGG+I F S+ GSTF F +T L P +
Sbjct: 477 RHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITL------ELHEGMLSLPPSL 530
Query: 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALV 982
+ RG I+ + AE T N + + ++ + + + LP+
Sbjct: 531 PDLRGKTLGYIEANPMAAEAT-------------LNMLSVTPLVITHSPTLAQLPK---- 573
Query: 983 LIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI-SETDRDELKSDGIVT 1041
KD +G+ + + + +G L+ + ++ +LA S+ + ++LK G +
Sbjct: 574 ---KDYDFLLVGVPIPFRDNLAQHEGKLKAALSIAGRVILALPCQSQINAEQLKQQGAIG 630
Query: 1042 LLTKPLRLSVLIGCFQ-EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGA 1100
L KP+ + L + E P + + ++ P ++ VDDN N ++
Sbjct: 631 CLIKPITGNRLFPLLRMETPHRLIAVPEPKRLP--------LTVMAVDDNPANLKLIGTL 682
Query: 1101 LKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160
L + + G A+ L + D MD+QMP +DG + + IR L + +
Sbjct: 683 LAEQVEKTLLCESGEEAL-ALARDNVLDLILMDIQMPNIDGIRTSELIRQLPHHNS---- 737
Query: 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
PI+A+TA + E ++ GMDDY++KP ++ L +AR++
Sbjct: 738 ----------------TPIVAVTAHAVSGEREHLLQAGMDDYLAKPIDEAMLTRVLARYY 781
>gi|261251052|ref|ZP_05943626.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417955337|ref|ZP_12598357.1| CheY-like receiver [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260937925|gb|EEX93913.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342813393|gb|EGU48364.1| CheY-like receiver [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 1319
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 199/624 (31%), Positives = 299/624 (47%), Gaps = 117/624 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + K A+A AK +FLA +SHEIRTPMNG+LGM+ + ++TELD AQ Y + S
Sbjct: 592 ELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHLALNTELDPAQHKYLTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +KIE G+L E + F L +V DN+ ++ S KA +K IE + + +
Sbjct: 652 AKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFDNLTNVISLKAQEKKIEFLLDIEPQ 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP T L+G+ ++ Q V V+L
Sbjct: 712 VP--------------TGLIGDPLRIGQ------VLVNLC-------------------- 731
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ V T G VV +ML + + L +V+DTG+GI E
Sbjct: 732 ----GNAVKFTEQGEVVVAV-----RIEMLTERDVV-------LHFSVKDTGIGIDKEKI 775
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+F F QADSS +R +GGTG+GLSIS+ LVELMGG++ S G GSTF+FT+T
Sbjct: 776 AHLFDAFSQADSSITREFGGTGLGLSISKQLVELMGGQLSVSSTLGAGSTFAFTITCGLQ 835
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH-----VANSMQ 961
E K + ++ G RALV+DD + R L L A+H V+N +
Sbjct: 836 E-----AKMRDISKPIAGLAGKRALVVDDN----DSARNILVTLLNAMHFDAKAVSNGFE 886
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFL 1021
D Q L +D W+ GL +L+ + + L+ S+N FL
Sbjct: 887 ALDEIRRD--------QFDLFFVD---WNMP-GLNGIELLQTAQSERLLQHSKN----FL 930
Query: 1022 LATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPSLGH 1077
+ E D+ S + +L+ KP+ L ++ F + + + +KP
Sbjct: 931 VTAYGREISLDQANSKLVDSLIVKPVNPSNLLDAIMDSFGIEHVTRDNPTNQFEKP---- 986
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
+ G+ IL+V+DN VN+ VA G LK V + G+ A+D L H D MD+QMP
Sbjct: 987 VFDGQTILLVEDNEVNQEVAIGLLKGTNVNVLTAENGQQAMDML-EQHPVDLVLMDMQMP 1045
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMK 1196
+DG AT QIR N W +PI+AMTA+ +Q+ E+C+
Sbjct: 1046 VLDGVSATEQIRRNPN---------------------WQQLPIIAMTANAMQSDVERCIT 1084
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
GM+ +++KP LY ++++
Sbjct: 1085 AGMNSHLAKPINVHNLYKTLSQYL 1108
>gi|392408688|ref|YP_006445295.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390621824|gb|AFM23031.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1109
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 194/629 (30%), Positives = 296/629 (47%), Gaps = 119/629 (18%)
Query: 604 DYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTA 663
D E+ E K +AE AD++KS+FLA +SHEIRTPMN ++GM ++ +TEL Q +Y QT
Sbjct: 447 DVTELAEAKRQAEQADLSKSRFLANMSHEIRTPMNAIIGMAELAQNTELTPVQREYIQTI 506
Query: 664 HNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYV 723
SG L+++IND+LD +KIE+G+L+ FV L D + + +S+A+ KG+EL +
Sbjct: 507 ETSGHSLLAIINDILDFSKIEAGKLQISFVGLSLTDCVCGSVHSLASQAHAKGLELVCRI 566
Query: 724 SDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKS 783
+ +P+ +IGDP R RQII NLVGN+IKFT KG + V V +V + KV +
Sbjct: 567 APGIPDHLIGDPERIRQIIINLVGNAIKFTH-KGEVLVEVEEESRSAHQVLLHFKVSDTG 625
Query: 784 LNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPL 843
+ + K V+ F+ D++ + T TG+G
Sbjct: 626 IGIPRQKQKTVFCA---------------FEQADSSTSR----------TYGGTGLG--- 657
Query: 844 EAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903
L+IS LVELMGG I S PG GS F+F +
Sbjct: 658 ---------------------------LAISSQLVELMGGNIWVESSPGKGSVFNFRIPM 690
Query: 904 TEGERNSLDPKWQQYVP---DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
E +S P+ +P D+ +G R L++DD + + L + M ++
Sbjct: 691 ---EIHSAPPE----IPVSQDLRTLKGTRVLIVDDNATNRRILVELLIQWGMIPSAVDNG 743
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS---RNLP 1017
+ A L + A+VL+D M+ + G ++S + +P
Sbjct: 744 RTALKTLRERYKMGT--PFAMVLVD-------------CMMPEM---DGFQVSEAIKAIP 785
Query: 1018 K-----IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE-----DPESSKKLQ 1067
+ I +L +++ + ++ ++ GI T L KP+ S L E +SS +
Sbjct: 786 ELASTHIIMLTSALPDYSAEKCRAAGIETCLLKPIHKSNLYSAIHELLSGAKSDSSLEET 845
Query: 1068 QKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
+RK L+ IL+ +DN N++VA G L G ++ V G AV+ T F
Sbjct: 846 ARRKVRKTERPLR---ILLAEDNAFNQKVASGMLSGMGHSISVVPNGAEAVEAYT-RGGF 901
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD+QMP MDGF+AT IR E G +PI+AMTA +
Sbjct: 902 DVILMDVQMPLMDGFEATAAIRAFEKN------------------GAPRIPIVAMTAHAM 943
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
E+C+ GMD YV+KP E+L+ A+
Sbjct: 944 AGDRERCLNAGMDGYVAKPISSEELFCAL 972
>gi|386848326|ref|YP_006266339.1| sensory box histidine kinase/response regulator [Actinoplanes sp.
SE50/110]
gi|359835830|gb|AEV84271.1| sensory box histidine kinase/response regulator [Actinoplanes sp.
SE50/110]
Length = 1418
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 196/606 (32%), Positives = 282/606 (46%), Gaps = 106/606 (17%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS+F+A +SHEIRTPMNGV+G+ +L+DT+LDA Q DY T NS L+++IND+LD +
Sbjct: 779 KSEFVANMSHEIRTPMNGVIGLTSLLLDTDLDARQRDYLTTVQNSADALLNVINDILDFS 838
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+L+ + V F V+++V+SL ++ A KG+E+A ++ +P + GD R RQI
Sbjct: 839 KIEAGKLDIDPVDFDPRAVVEDVVSLLAATAQAKGLEIAAVITPAIPPALNGDAHRIRQI 898
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+TNLV N++KFT G + V+V + + +D V E +
Sbjct: 899 LTNLVSNAVKFTA-HGEVVVTVEIGEP-------RDGVREVTF----------------- 933
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
V DTG+GIP + Q +F F QAD+ST+
Sbjct: 934 -------------------------------AVTDTGIGIPADRQAHLFEAFTQADASTT 962
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R YGGTG+GL+ISR LV LMGG IG SEPG GS F FT+ G L PD
Sbjct: 963 RRYGGTGLGLTISRQLVGLMGGSIGLDSEPGRGSRFHFTLPL-PGAGAPLPGSH----PD 1017
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
E +R LV+DD S V L M H A + L + +AL
Sbjct: 1018 -PELTDVRVLVVDDNSTNRTVVTGLLTGWSMDAHAVADAGAALTALREAADAGTPYAVAL 1076
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVT 1041
+ + D G+ L ++ G ++ +L ++ + + G++
Sbjct: 1077 LDMHMPGLD---GIDLARIIHGDPLLQGTSLA-------MLTSTNQAGEAQAARDAGVLA 1126
Query: 1042 LLTKPLR-------LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNR 1094
LTKP+R L L+G P + +R S H +L+ +DN VN+
Sbjct: 1127 YLTKPVRAIQLRTTLLQLLGRTPASPAPEQTSIAERPG-STAH------VLIAEDNEVNQ 1179
Query: 1095 RVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENE 1154
V L G G AV L H +DA MD QMP +DG+QAT IR L
Sbjct: 1180 EVTREMLAALGYTCDIAADGEQAVRMLQTRH-YDAVLMDCQMPVLDGYQATEVIRRLPAP 1238
Query: 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYT 1214
N VP++A+TA V+ + ++C GMDD ++KP L
Sbjct: 1239 RNA-------------------VPVIALTASVLASDQQRCRSAGMDDVLTKPLRKHDLQA 1279
Query: 1215 AVARFF 1220
+ RF
Sbjct: 1280 YLTRFL 1285
>gi|251788450|ref|YP_003003171.1| hybrid sensory histidine kinase BarA [Dickeya zeae Ech1591]
gi|247537071|gb|ACT05692.1| Hpt sensor hybrid histidine kinase [Dickeya zeae Ech1591]
Length = 922
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 185/609 (30%), Positives = 296/609 (48%), Gaps = 117/609 (19%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + + T+L Q DY QT S +L+
Sbjct: 281 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQLTTTQKDYLQTIERSANNLL 340
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++INDVLD +K+E+G+L E +PF LH+ LD V+ L + A++KG+EL + + VPE
Sbjct: 341 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQF 400
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +QI+TNL+GN+IKFT ++G+I D+R +EK
Sbjct: 401 VGDPLRLQQIVTNLLGNAIKFT-EQGNI--------DIR---------IEK--------- 433
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+ EN ++L L + ++DTG+GI Q ++F
Sbjct: 434 ----------------RKQENLQVL-------------LEIQIKDTGIGIAEAQQTQLFQ 464
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P G+TF TV + + L
Sbjct: 465 AFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCTVNL-QLNPHML 523
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+P + +G ++ A+ T L++ VH L SY +
Sbjct: 524 EPDYH-----FDRLQGKHLAYVETNPAAAQAT------LDILVHTP----LTVSY---SP 565
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS-------RNLPKIFLLAT 1024
+ LP+ ++ IG+ +H+ R L+ + R + L
Sbjct: 566 TLEQLPERTFDIL-------LIGVPIHF------RNTLLDFTPQIRDFCRLASSVILALP 612
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK-GKQ 1083
S++E + ++L S GI L+KP+ L+ Q++ ++ + P +
Sbjct: 613 SMAELEAEQLMSFGIHASLSKPITAPRLLSLLQDNSLFNQDNEVHTLPPPTASFNRLPLN 672
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
++ VDDN N ++ L++ + + G A+ + D MD+QMP MDG Q
Sbjct: 673 VMAVDDNPANLKLIGALLEEQVENIILCENGADAIAR-AQETRLDIILMDIQMPGMDGLQ 731
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
A+ IR L + H PI+A+TA + E+ ++ GMDDY+
Sbjct: 732 ASEHIRRLPQHM--------------------HTPIVAVTAHTMSGEREELLQSGMDDYL 771
Query: 1204 SKPFEDEQL 1212
SKP +++ L
Sbjct: 772 SKPIDEQML 780
>gi|86609102|ref|YP_477864.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557644|gb|ABD02601.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 1442
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 203/637 (31%), Positives = 298/637 (46%), Gaps = 117/637 (18%)
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
L G +F+AA I + +M K AEAA AKS+FLAT+SHEIRTP+N +LGM
Sbjct: 780 LAGSLFYAAGRDITVAKLAEEQMKAAKEAAEAASRAKSEFLATISHEIRTPINAILGMTS 839
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
+L+DT LD Q D+ QT G+ L++LIND+LD +KIES +LE E +PF L +++ +L
Sbjct: 840 LLLDTSLDPQQQDWVQTIRYGGEVLLNLINDILDFSKIESQKLELEEIPFSLPQLVEELL 899
Query: 706 SLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
L +++A K +EL +V +P +IGDP R RQI+ NL+ N+IKFT +G + V+V
Sbjct: 900 DLMAAQAQSKDLELVAWVDPSLPPTLIGDPNRLRQILANLLSNAIKFT-PQGEVVVTVEA 958
Query: 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQL 825
+ D K W N ++ D
Sbjct: 959 GER------------------------------------DPEKQWVNVQVRD-------- 974
Query: 826 GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
TG+GIP E R+F PF Q DSS SR +GGTG+GL+IS+ L +LMGG I
Sbjct: 975 -----------TGIGIPPEKLDRLFKPFSQVDSSISRQFGGTGLGLAISQRLCQLMGGAI 1023
Query: 886 GFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRY 945
G S+PG GSTF F + ++ L PD G R L+++D + + ++
Sbjct: 1024 GVESQPGQGSTFRFRIPLKRPDQELLPTA----APDPC-LAGKRVLLVEDNASQRQLLSR 1078
Query: 946 HLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005
L M V C+ ++ + + L L+D + ++ GL L L++ +
Sbjct: 1079 LLSAWGMEVT-------CCALAAEAQAAARTHSFDLALLDATLPGQD-GLTLAANLRKAQ 1130
Query: 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPE 1061
R LP + T R+ + + + L KP++ S +L+G E
Sbjct: 1131 -------PRLLPLVL--------TGRNFISTADPLPTLAKPVKASQLRKLLLGLVGEKAP 1175
Query: 1062 SSKKLQQKRKKPSLGHLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
SS L + QILV +DN VN++V L++ G V G AV
Sbjct: 1176 SSLSSSPAAPPSIWDATLASRYPLQILVAEDNPVNQKVIRLMLERLGYRPDIVGNGLEAV 1235
Query: 1119 D--KLTPPHNFDACFMDLQMPEMDGFQATWQIR-HLENEINEQIASGESSAEMFGNVGLW 1175
+L P +D MD+QMPE+DG AT +IR L E +
Sbjct: 1236 QALRLRP---YDLVLMDMQMPELDGLAATRRIRAELPPERQPR----------------- 1275
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
I+ +TA+V G+D Y++KP E L
Sbjct: 1276 ---IVVLTANVFSEGRAAAQAAGVDGYLTKPLEPAAL 1309
>gi|84386181|ref|ZP_00989210.1| hypothetical two-component sensor [Vibrio splendidus 12B01]
gi|84378951|gb|EAP95805.1| hypothetical two-component sensor [Vibrio splendidus 12B01]
Length = 809
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 197/680 (28%), Positives = 308/680 (45%), Gaps = 151/680 (22%)
Query: 591 FHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
++ ++ RI Q Y E+ + K AE A+ KS+FLA +SHEIRTPMNG++G+ +L +
Sbjct: 215 YNQSVERIRQ---QYQELEKAKDVAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEM 271
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
++ Q +Y + S L+ LIND+LD +KIE+GRLE + P + + +V S F
Sbjct: 272 DMPKEQKEYVDMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRV 331
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV- 769
KA QKG+ + + ++P +VIGD + RQ++ NLVGN+IKFT+ GH+ +S+ L + +
Sbjct: 332 KAEQKGLRFQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTE-HGHVTLSLRLEEVIE 390
Query: 770 -RSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRI 828
K+ VK +V + + + K V++ F+ D +
Sbjct: 391 PEQKLRVKFEVTDSGIGIAEDKQQSVFD---------------KFQQADGS--------- 426
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
T+R YGGTG+GL+I +V LMG ++
Sbjct: 427 -------------------------------TTRIYGGTGLGLTICDKIVTLMGSKLELT 455
Query: 889 SEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSE----FRGLRALVIDDKSIRAEVTR 944
S G GSTF FT F DP DV E F + L++DD + +T
Sbjct: 456 SVVGKGSTFYFTADF--------DPSL-----DVDESNIDFNKVSVLLVDDSQLNMRITS 502
Query: 945 YHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004
LQ + + A +S++ + S LVLIDK V G L L ++
Sbjct: 503 TQLQSFGVKSECCETATQALELVSESVAKS--SPYDLVLIDK-VMPSIDGFQLARSLIER 559
Query: 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR-------LSVLIG--- 1054
K PK+ +++ + D + K G V + +P + LS ++
Sbjct: 560 FDKA-------CPKLVMISADPRKQDEERAKQVGFVAYIARPYQDNQLKWTLSEVLARAA 612
Query: 1055 -------------CFQED---------------PESSKKLQQKRKKPSLGHLLK------ 1080
F+++ P +S Q K+ + K
Sbjct: 613 DTSNFTYPNRGEVAFKDNEPVPLTKPTRSVEATPTASVTTTQTDKQAPIKEEPKPVAASF 672
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
++LVV+D+ VN++VA+ LKK G V D G V+K + ++ FMD QMP +D
Sbjct: 673 SGKVLVVEDSRVNQQVAKMMLKKLGFEVDIADNGEIGVEKFQ-ANEYEMIFMDCQMPVLD 731
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
GF+AT QIR LE E S++ H+PI+A+TA+V+Q C GMD
Sbjct: 732 GFEATKQIRALE----------EGSSQ--------HIPIVALTANVVQRDKHLCFDVGMD 773
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
+++ KP +L VA F
Sbjct: 774 EFLPKPVNQGKLREIVASFL 793
>gi|197336284|ref|YP_002156881.1| hybrid sensory histidine kinase BarA [Vibrio fischeri MJ11]
gi|197317774|gb|ACH67221.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri
MJ11]
Length = 931
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 202/685 (29%), Positives = 303/685 (44%), Gaps = 133/685 (19%)
Query: 552 DPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMME- 610
D R+ + R + K + I + I+L H+ I Q +D E +E
Sbjct: 211 DRIRRGHLDVRIENKLHGELDTLKNGINAMAISLSEYHV--EMQQSIDQATSDLRETLEQ 268
Query: 611 ----------LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T L Q DY
Sbjct: 269 LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTSLSENQQDYL 328
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
QT S +L+++IND+LD +K+E+G+L E +PF D LD V+SL + A++KG+E+
Sbjct: 329 QTIERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEIT 388
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
+ + RVP +IGDP R +Q++ NLVGN+IKFT+ KG+I +SV
Sbjct: 389 LKIDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTE-KGNIDISVE---------------- 431
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
++H +D + L V DTG+G
Sbjct: 432 ------LKHLADDY---------------------------------VDLQFVVRDTGIG 452
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
I Q ++F F QAD+S SR YGGTG+GL I++ L+ MGGEIG S GSTF FT
Sbjct: 453 ISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFT 512
Query: 901 VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
+ + L+ D+++ + L+I+ A + + Q + V V
Sbjct: 513 IRMHPTDLPMLNDH------DITQLEKKKLLLIEPNMQSASILQQ--QFISHGVFV---- 560
Query: 961 QLACSYLSDTCSTSVLPQLA----LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
S LP++ LI K + M Q +S N
Sbjct: 561 ----------TYRSTLPEIIEPHDYALISLSSNSKPSIETIQEMTSQ--------LSANC 602
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
I + S DEL +T L+KP L+ + K LQ + P L
Sbjct: 603 STIIVGLPSTELALTDELNQFSHITCLSKPFAKKKLLDALLVE----KDLQPVPELPDLM 658
Query: 1077 HLLKGKQ-----ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
+Q ++ VDDN N ++ L + V D G AV + T H FD
Sbjct: 659 AHASEEQKLPIKVMAVDDNPANLKLISALLSEQVETVITCDNGLDAVQQATEQH-FDIIL 717
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP+MDG A +IR + +N Q P++A+TA ++
Sbjct: 718 MDIQMPKMDGVMACKEIR--KTALNAQ------------------TPVVAVTAHAMEGER 757
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAV 1216
E+ + GMDDY++KP E+ L +
Sbjct: 758 ERLISEGMDDYLTKPIEEHVLQQVI 782
>gi|442611453|ref|ZP_21026159.1| hypothetical protein PALB_31220 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441747381|emb|CCQ12221.1| hypothetical protein PALB_31220 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 1247
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 187/621 (30%), Positives = 290/621 (46%), Gaps = 106/621 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K +A+ KS+FLA +SHEIRTPMN +LGM + + T L+ Q DY + N+
Sbjct: 507 ELINAKEQADRLTKVKSEFLANMSHEIRTPMNAILGMAHLALKTNLNTKQHDYVKKISNA 566
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+SLIND+LD +KIE+G+L E PF L DVL+NV ++ +A +K ++L +
Sbjct: 567 AQQLLSLINDILDFSKIEAGKLTLEHTPFQLTDVLNNVNAILEIRALEKDLKLVFNIDPA 626
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT D+G++ +S+
Sbjct: 627 LPPYLIGDPLRLGQVLINLAGNAVKFT-DRGNVTISLQ---------------------- 663
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
VQ ++D N L F +V DTG+G+ E Q
Sbjct: 664 VQRQTDN--NVLVRF-------------------------------SVSDTGIGMSQEQQ 690
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF--T 904
+F F QAD+S SR YGGTG+GL+IS+ +V LMG EI S G GS FSF + T
Sbjct: 691 KALFQSFSQADTSISRKYGGTGLGLTISQQIVRLMGAEIYVESTLGQGSEFSFCIELDCT 750
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
+ + + Y D + LV+DD +T L+ + V+ A
Sbjct: 751 KAPQEA----QSNYTFD----ETINVLVLDDNLQALTITDDQLRSMGATVYATTDPLEAQ 802
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWD-KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
L + + + ID W +E + Q + ++L
Sbjct: 803 KLLRENS-------IDVAFID---WKLRETNGIEFIKQNQNSTNSTNSTNSTNSTHYVLI 852
Query: 1024 TSIS-ETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPSLGHL 1078
T+ E + + + I ++ KP S L I C + + ++ K +L
Sbjct: 853 TAYGRELVLNTKEREMIECVIYKPTTASFLYDAIISCLGKYVSLAAPMEHNEDKSTL--- 909
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
G +LV +D +N+ +A LK +GA VT + G+ A+D L FD MD+QMP
Sbjct: 910 FSGLSVLVAEDQPINQEIAMEILKHYGATVTIANNGQEAIDAL-ESETFDLILMDMQMPI 968
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
+DG AT IR S +E+ PILAMTA+ + +C++ G
Sbjct: 969 VDGLTATRIIR-----------KHYSKSEL---------PILAMTANAMHEDITRCLEAG 1008
Query: 1199 MDDYVSKPFEDEQLYTAVARF 1219
M+D+++KP + +QL + R+
Sbjct: 1009 MNDHLAKPIDIKQLELKIKRY 1029
>gi|350551693|ref|ZP_08920906.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349796831|gb|EGZ50614.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1360
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 186/630 (29%), Positives = 290/630 (46%), Gaps = 96/630 (15%)
Query: 593 AAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
A + + Q++ H + + K AE A+ K QFLA +SHEIRTP+N V+G+ +L+ T L
Sbjct: 598 AVYSDLTQIKQSEHALQQAKEEAERANQLKGQFLANMSHEIRTPLNAVIGLSHLLLQTPL 657
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
+ QLDY H+S + L+++IND+LD AKIE+G+LE E PF LH+++ + +LF++ A
Sbjct: 658 NEGQLDYLHKIHDSARILLAIINDILDYAKIEAGKLELEIQPFSLHELIQQMGTLFAAAA 717
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+QK +EL + VP+ +IGD R QI+TNL+GN+IKFT VS+ ++
Sbjct: 718 SQKNLELLFQIHPDVPDRLIGDRLRLGQILTNLLGNAIKFTHQGT---VSLRISPTPLPP 774
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
V H V ++ G K ++ F D++ T E
Sbjct: 775 HQV-------------HLDIAVEDSGIGMSAAQVAKLFQEFSQADSSTTRE--------- 812
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
YGG+G+GL+ISR LV+ MGG SEPG
Sbjct: 813 -------------------------------YGGSGLGLAISRQLVDKMGGRFTVQSEPG 841
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGL-RALVIDDKSIRAEVTRYHLQRLE 951
GS F F++T E N+ D + P+ +G+ R LV DD + + R L+ +
Sbjct: 842 KGSCFGFSLTLPIAEPNTPDMQ----CPEA--LQGMRRVLVADDHPLARCILREMLEHCQ 895
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
VH A + + VL+D D+ + G+ + + +Q+
Sbjct: 896 FEVHEATNSDATLKAIHRAREND--QPFDFVLLDWDMPGQRDGMGVAREISRQQAPQATG 953
Query: 1012 ISR-NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKR 1070
I + ++ I LA ++ RD L KP+ L +L + +S
Sbjct: 954 IPQTSVIMISALAAPMTPGKRD------YQVFLNKPVTLPMLWKAMIQSKQSQPATPSPP 1007
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
+ +L+V+DN++N++VA LKK GA V + G AV+ + D
Sbjct: 1008 PAKAAPD-FSAYTLLLVEDNLINQQVAVSMLKKTGAQVLVANQGLEAVN-IAHTQLLDLI 1065
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MDLQMP MDGF A QI+ L + PI+A++A V+
Sbjct: 1066 LMDLQMPVMDGFTAARQIKALHPRL----------------------PIIALSAAVLDQD 1103
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
++ GMD ++ KP E E+LY +A +
Sbjct: 1104 RQEVKAAGMDAHLGKPIEPERLYQTLAHYL 1133
>gi|209524002|ref|ZP_03272554.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209495674|gb|EDZ95977.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 966
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 193/678 (28%), Positives = 308/678 (45%), Gaps = 141/678 (20%)
Query: 570 PWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATV 629
PW + +G V++ ++ +N + + N + ++ K+R FLA +
Sbjct: 265 PWYRNSGEVGGVILVII-------PLNNLVETRNAALDAVQFKSR----------FLAQM 307
Query: 630 SHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLE 689
SHEIRTPM+GVLGM+++LM T L Q DY QT + S K L+++IN++LD +K+E+G
Sbjct: 308 SHEIRTPMSGVLGMVELLMQTHLTPQQKDYTQTIYRSAKHLLTVINEILDLSKLEAGETH 367
Query: 690 PEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNS 749
E F L D L+ V+ L + KA K +EL I + +P + GD R +Q++ NLV N+
Sbjct: 368 LESHDFDLQDCLETVVDLLAVKAEDKQLELIILLEPNLPRYLKGDGMRLQQVLINLVNNA 427
Query: 750 IKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKS 809
IKFT+ S H+ V +V +D
Sbjct: 428 IKFTK-------SGHIIIRVTPRVISQD-------------------------------- 448
Query: 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGI 869
I + +EDTG+GI E Q ++F PF A S+T+R YGGTG+
Sbjct: 449 -----------------HINIYFAIEDTGMGISDELQPQLFQPFSPASSATNRQYGGTGL 491
Query: 870 GLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLD-PKWQQYVPDVSEFRGL 928
GLSI + LV LMGGEIG S+ GS F F TF E + PK E + +
Sbjct: 492 GLSICQHLVNLMGGEIGVKSQEEEGSIFWFNATFLPSELSETSAPK---------ELKNM 542
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
LV+++ S+ Q + V A++ ++A + L+L+D ++
Sbjct: 543 SLLVVENSSLVRHSVSCITQPWGIQVETADTSKIALDKWHHQQAKG--SPYNLILMDLEL 600
Query: 989 WDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE-LKSDGIVTLLTKPL 1047
D+ +L + K S + P +L +SIS+ +R E + + G L KP+
Sbjct: 601 LDRHGAKLLGQLYK---------TSSDSPTQLILMSSISQRNRAEQVLNLGDFVYLVKPI 651
Query: 1048 RLSVLIGCFQED-----PESSKKLQQ------------KRKKPSLGHLLKGK-------- 1082
L+ F + P L + + KP HL +
Sbjct: 652 APLRLLRSFAKALELDIPNLDHHLDKSWDDVLMGSSFPETPKPPCCHLSQTNDKLRASIP 711
Query: 1083 -QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+IL+ +D++VN+ V L++ G + V G A + L H +D MD QMP +DG
Sbjct: 712 LKILLAEDDLVNQEVVLTQLQQLGYVADAVSDGEAVLQHLETQH-YDLILMDCQMPILDG 770
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
++ T +IR +N I I+A+TA V+ + ++C++ GMDD
Sbjct: 771 YETTARIRGSQNSQRPPI-------------------IIALTASVMPSDRDRCLQVGMDD 811
Query: 1202 YVSKPFEDEQLYTAVARF 1219
Y++KP + + L + R+
Sbjct: 812 YITKPIDLQALVNVINRW 829
>gi|218677263|ref|YP_002396082.1| two-component sensor [Vibrio splendidus LGP32]
gi|218325531|emb|CAV27738.1| putative two-component sensor [Vibrio splendidus LGP32]
Length = 808
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 207/715 (28%), Positives = 320/715 (44%), Gaps = 155/715 (21%)
Query: 560 HCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAAD 619
H + + P T N++ + TL ++ +I RI Q Y E+ + K AE A+
Sbjct: 186 HQQVEDNKPRFLTPTNSTYSDEISTL--ESSYNQSIERIRQ---QYQELEKAKDTAEVAN 240
Query: 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLD 679
KS+FLA +SHEIRTPMNG++G+ +L + ++ Q +Y + S L+ LIND+LD
Sbjct: 241 RNKSEFLANMSHEIRTPMNGIIGLSSLLSEMDMPKEQKEYVDMLNTSSLTLLDLINDILD 300
Query: 680 QAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFR 739
+KIE+GRLE + P + + +V S F KA QKG++ + + ++P +VIGD + R
Sbjct: 301 YSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLKFQLAIDPKIPTMVIGDGTQLR 360
Query: 740 QIITNLVGNSIKFTQDKGHIFVSVHLADDV--RSKVDVKDKVLEKSLNSVQHKSDKVYNT 797
Q++ NLVGN+IKFT+ GH+ +S+ L + + K+ VK +V + + + K V++
Sbjct: 361 QVLNNLVGNAIKFTE-HGHVMLSLRLEEVIEPEQKLRVKFEVTDSGIGIAEDKQQSVFD- 418
Query: 798 LSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
F+ D +
Sbjct: 419 --------------KFQQADGS-------------------------------------- 426
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQ 917
T+R YGGTG+GL+I +V LMG ++ S G GSTF FT F DP
Sbjct: 427 --TTRIYGGTGLGLTICDKIVTLMGSKLELTSIVGKGSTFYFTADF--------DPSL-- 474
Query: 918 YVPDVSE----FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
DV E F + L++DD + +T LQ + + A +S++ +
Sbjct: 475 ---DVDESNIDFNKVSVLLVDDSQLNMRITSTQLQSFGVKSECCETATQALELVSESVAK 531
Query: 974 SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
S LP LVLIDK V G L L ++ K PK+ +++ + D
Sbjct: 532 S-LP-YDLVLIDK-VMPSIDGFQLARSLIERFDKA-------CPKLVMISADPRKQDEAR 581
Query: 1034 LKSDGIVTLLTKPLR-------LSVLIG----------------CFQED----------- 1059
K G V + +P + LS ++ F+++
Sbjct: 582 AKQVGFVAYIARPYQDNQLKWTLSEVLARSADTSTFTYPNRGEVAFKDNQPVPLTKSSSS 641
Query: 1060 -----PESSKKLQQKRKKP------SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIV 1108
S + Q ++ P + GK +LVV+D+ VN++VA+ LKK G V
Sbjct: 642 VEATTSASVRTTQIDKQAPIKEEPKPVAAPFSGK-VLVVEDSRVNQQVAKMMLKKLGFEV 700
Query: 1109 TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEM 1168
D G V+K +++ FMD QMP +DGF+AT QIR LE G S
Sbjct: 701 DIADNGEIGVEKF-KANDYVMIFMDCQMPVLDGFEATKQIRALEE--------GTSK--- 748
Query: 1169 FGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
H+PI+A+TA+V+Q C GMD+++ KP +L VA F G
Sbjct: 749 -------HIPIVALTANVVQRDKHLCFDVGMDEFLPKPVNQGKLREIVASFLSKG 796
>gi|218709306|ref|YP_002416927.1| two-component regulatory system multi-sensor hybrid histidine kinase
[Vibrio splendidus LGP32]
gi|218322325|emb|CAV18455.1| putative two-component regulatory system; Multi-sensor hybrid
histidine kinase [Vibrio splendidus LGP32]
Length = 1223
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 211/657 (32%), Positives = 327/657 (49%), Gaps = 125/657 (19%)
Query: 582 VITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVL 641
VI LL+G + + A + +E H + + A+AA+ AKS FLA +SHEIRTPMN ++
Sbjct: 443 VIILLMGLLANKAH---SALETFTHSLAAARDEADAANHAKSDFLANMSHEIRTPMNAII 499
Query: 642 GMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVL 701
GM + + T+L AQ +Y S L+ LIND+LD +KIE+G+L+ E V F L +VL
Sbjct: 500 GMSYLALKTDLTKAQRNYIHKVKLSSDTLLGLINDILDFSKIEAGKLDIEKVDFQLENVL 559
Query: 702 DNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFV 761
DN+ +L +A+ +G+EL I V VP TNL+G+ ++ G I +
Sbjct: 560 DNITNLVGLRASDRGLELLIQVDRDVP--------------TNLIGDPLRL----GQILI 601
Query: 762 SVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNT 821
++ S N+V+ ++K +S V +R
Sbjct: 602 NL-------------------SNNAVKF-TEKGEVKIS-ISVAER--------------- 625
Query: 822 MEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELM 881
Q IKL V D+G+G+ E ++FT F QADSST+R YGGTG+GL+IS+ L +LM
Sbjct: 626 --QGDDIKLNFAVSDSGIGMKQEQASKLFTKFTQADSSTTRKYGGTGLGLAISKELSQLM 683
Query: 882 GGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQY---VPDVSEFRGLRALVIDDKSI 938
GG+I +E G GSTFSFT+ + QQ+ VP + L+ LV+DD S
Sbjct: 684 GGDIHVSTELGKGSTFSFTIA------TRVSHSIQQHRVVVP--ASINNLKVLVVDDNSS 735
Query: 939 RAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD--KEIGLV 996
+ L+ L++ +++S+ A L T P LV+ D W K G+
Sbjct: 736 ARLIVGDILESLKLTPILSSSVDEALIELH-TADAQNKP-FDLVISD---WKMPKRDGVD 790
Query: 997 LHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL------KSDGIVTLLTKPLRLS 1050
L L K G +++ +PKI +L + DR+EL + + ++L KP+ S
Sbjct: 791 LLAEL-----KNGQQLT--MPKIMML----TAYDREELAELIEQRGFEVPSILDKPITSS 839
Query: 1051 ------VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKH 1104
V + D S +L+Q+ + ++ L G IL+V+DN +N+ +A L+
Sbjct: 840 HLYDSIVSLYGLDSDRVSRSELEQQNQLANVQQ-LAGANILLVEDNEINQELATELLEGQ 898
Query: 1105 GAIVTCVDCGRAAVD----KLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160
VT + G+ A+D +T FD MD QMP MDG++AT IR +IN+Q
Sbjct: 899 QIKVTIAENGQQAIDLYQQAITDDVPFDGILMDCQMPVMDGYEATEYIRQ---QINDQ-- 953
Query: 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
+PI+AMTA+V++ E+ + CGM D ++KP + ++ +A
Sbjct: 954 ---------------DIPIIAMTANVMERDKEKALSCGMSDIIAKPIDVGSMFATLA 995
>gi|410672020|ref|YP_006924391.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
gi|409171148|gb|AFV25023.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
Length = 1771
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 199/625 (31%), Positives = 297/625 (47%), Gaps = 110/625 (17%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+VE E+ ARAE A AKS+FLA +SHEIRTPMNGV+GM +L+DTEL+ Q Y
Sbjct: 1106 EVEIKNKELDRALARAEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDTELNEEQRHY 1165
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
+T SG+ L+ +IND+LD +KIE+G+LE E + F LH+VLD+ ++ S KA+ KG+E
Sbjct: 1166 VETVQASGEALLEIINDILDFSKIEAGKLELEMLDFDLHNVLDSFAAMLSIKAHDKGLEF 1225
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
VP + GDPGR +QI+TNL GN++KFT G + V V + ++V ++ V
Sbjct: 1226 ICAADPDVPAYISGDPGRLQQILTNLAGNAVKFTH-LGEVVVRVTRESETNTEVLLRFSV 1284
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
+ + + K ++N F +D + T
Sbjct: 1285 KDTGIGIAEDKIGLLFN---------------QFYQIDASTT------------------ 1311
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
R Y GTG+GL+IS+ LV++MGG IG S G GS F F
Sbjct: 1312 ----------------------RQYSGTGLGLAISKQLVKMMGGNIGVKSNEGKGSEFWF 1349
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM----AVH 955
T+ F + D ++ +P ++ + R LV+DD + E+ L AV
Sbjct: 1350 TLRFAK----RPDGAIKKLLP--ADIQSARILVVDDNATNREILISQLSSWGTNPVEAVD 1403
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
++Q D V ++D + + GL L ++K +
Sbjct: 1404 GPTALQTLYRAHEDHKPFHV------TILDMHMPGMD-GLTLARIIKSDDK--------- 1447
Query: 1016 LPKIFLLA-TSISETD-RDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP 1073
+ FL+ TS+ + ++L+ LTKPLR S L +K+Q++
Sbjct: 1448 IKDTFLIMLTSLGQWPVMEQLERSYFEAYLTKPLRQSELFDKLSSLLPIDRKIQEQSSNV 1507
Query: 1074 SLGHL----LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNF 1127
+ + +IL+ +DN+VN++VA+ LKK G V G A+ L P +
Sbjct: 1508 NENVVPQRHTNNVRILLAEDNIVNQKVAQSMLKKLGFRTDTVANGAEALKALEMIP---Y 1564
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD+QMPEMDG AT IR+ SG + V VPI+AMTA +
Sbjct: 1565 DLVLMDVQMPEMDGLAATRLIRY----------SGSA-------VLNKDVPIIAMTAHAM 1607
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQL 1212
+ E+ ++ GMDDY+SKP E L
Sbjct: 1608 KGDRERFIESGMDDYISKPVSMEAL 1632
>gi|423063675|ref|ZP_17052465.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
gi|406715107|gb|EKD10265.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
Length = 946
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 193/678 (28%), Positives = 308/678 (45%), Gaps = 141/678 (20%)
Query: 570 PWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATV 629
PW + +G V++ ++ +N + + N + ++ K+R FLA +
Sbjct: 245 PWYRNSGEVGGVILVII-------PLNNLVETRNAALDAVQFKSR----------FLAQM 287
Query: 630 SHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLE 689
SHEIRTPM+GVLGM+++LM T L Q DY QT + S K L+++IN++LD +K+E+G
Sbjct: 288 SHEIRTPMSGVLGMVELLMQTHLTPQQKDYTQTIYRSAKHLLTVINEILDLSKLEAGETH 347
Query: 690 PEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNS 749
E F L D L+ V+ L + KA K +EL I + +P + GD R +Q++ NLV N+
Sbjct: 348 LESHDFDLQDCLETVVDLLAVKAEDKQLELIILLEPNLPRYLKGDGMRLQQVLINLVNNA 407
Query: 750 IKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKS 809
IKFT+ S H+ V +V +D
Sbjct: 408 IKFTK-------SGHIIIRVTPRVISQD-------------------------------- 428
Query: 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGI 869
I + +EDTG+GI E Q ++F PF A S+T+R YGGTG+
Sbjct: 429 -----------------HINIYFAIEDTGMGISDELQPQLFQPFSPASSATNRQYGGTGL 471
Query: 870 GLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLD-PKWQQYVPDVSEFRGL 928
GLSI + LV LMGGEIG S+ GS F F TF E + PK E + +
Sbjct: 472 GLSICQHLVNLMGGEIGVKSQEEEGSIFWFNATFLPSELSETSAPK---------ELKNM 522
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
LV+++ S+ Q + V A++ ++A + L+L+D ++
Sbjct: 523 SLLVVENSSLVRHSVSCITQPWGIQVETADTSKIALDKWHHQQAKG--SPYNLILMDLEL 580
Query: 989 WDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE-LKSDGIVTLLTKPL 1047
D+ +L + K S + P +L +SIS+ +R E + + G L KP+
Sbjct: 581 LDRHGAKLLGQLYK---------TSSDSPTQLILMSSISQRNRAEQVLNLGDFVYLVKPI 631
Query: 1048 RLSVLIGCFQED-----PESSKKLQQ------------KRKKPSLGHLLKGK-------- 1082
L+ F + P L + + KP HL +
Sbjct: 632 APLRLLRSFAKALELDIPNLDHHLDKSWDDVLMGSSFPETPKPPCCHLSQTNDKLRASIP 691
Query: 1083 -QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+IL+ +D++VN+ V L++ G + V G A + L H +D MD QMP +DG
Sbjct: 692 LKILLAEDDLVNQEVVLTQLQQLGYVADAVSDGEAVLQHLETQH-YDLILMDCQMPILDG 750
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
++ T +IR +N I I+A+TA V+ + ++C++ GMDD
Sbjct: 751 YETTARIRGSQNSQRPPI-------------------IIALTASVMPSDRDRCLQVGMDD 791
Query: 1202 YVSKPFEDEQLYTAVARF 1219
Y++KP + + L + R+
Sbjct: 792 YITKPIDLQALVNVINRW 809
>gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae RC385]
gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae RC385]
Length = 1331
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 192/621 (30%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVSRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
++++SKP E ++ Y + F
Sbjct: 1089 NEHLSKPIEVDKFYQVLRHFL 1109
>gi|300248807|gb|ADJ95232.1| ExpS [Erwinia chrysanthemi]
Length = 922
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 188/611 (30%), Positives = 301/611 (49%), Gaps = 119/611 (19%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + + T+L Q DY QT S +L+
Sbjct: 280 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQLTTTQKDYLQTIERSANNLL 339
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++INDVLD +K+E+G+L E +PF LH+ LD V+ L + A++KG+EL + + VPE
Sbjct: 340 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQF 399
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +QIITNL+GN+IKFT ++G+I D+R +EK
Sbjct: 400 VGDPLRLQQIITNLLGNAIKFT-EQGNI--------DIR---------IEK--------- 432
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+ EN ++L L + ++DTG+GI Q ++F
Sbjct: 433 ----------------RKQENLRVL-------------LEIQIKDTGIGIAEAQQTQLFQ 463
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR +GGTG+GL I++ LV MGG+I F S+ G+TF TV T + L
Sbjct: 464 AFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKLNQGTTFWCTVNLTLNP-HML 522
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+P + + P +G ++ A+ T L++ VH L SY +
Sbjct: 523 EPDY-HFAP----LQGKHLAYVETNPAAAQAT------LDILVHTP----LTVSY---SP 564
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS-------RNLPKIFLLAT 1024
+ LP+ ++ IG+ +HY R L+ + R ++ L
Sbjct: 565 TLEQLPERTFDIL-------LIGVPIHY------RNTLLDFTPSIRDFCRLASRVILALP 611
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK-PSLGHLLK--G 1081
S++E + ++LK+ G+ L+KP+ L+ Q+ S++ ++ + P +L+
Sbjct: 612 SLAEIEAEQLKAFGVHASLSKPITAPRLLSLLQDTNLFSQEPHEEVQALPPPATVLQRLP 671
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++ VDDN N ++ L++ + + G A+ + + D MD+QMP MDG
Sbjct: 672 LSVMAVDDNPANLKLIGALLEEQVENIILCESGADAIAR-AQENRLDIILMDIQMPGMDG 730
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
QA+ IR L PI+A+TA + E ++ GMDD
Sbjct: 731 LQASEHIRRLPQH--------------------AQTPIVAVTAHTMSGEREVLLQAGMDD 770
Query: 1202 YVSKPFEDEQL 1212
Y+SKP +++ L
Sbjct: 771 YLSKPIDEQML 781
>gi|302879443|ref|YP_003848007.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302582232|gb|ADL56243.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1346
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 183/612 (29%), Positives = 289/612 (47%), Gaps = 110/612 (17%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
A+ A AKS FLA +SHEIRTPMN ++G+ ++ +D+EL Q D+ + +N+ + L++++
Sbjct: 619 ADLASRAKSDFLANMSHEIRTPMNAIIGLTRITLDSELAPKQRDHLRKVYNASRALLNIL 678
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
+D+LD +KIE+ +LE E V F L DV+ LF K +K +EL I + + ++GD
Sbjct: 679 DDILDYSKIEANKLEIERVEFILEDVIRECFDLFMQKLQEKELELFIEIDPLISCSLLGD 738
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
P R QI+ NL+ N+IKFTQ R ++ ++ ++
Sbjct: 739 PLRLGQILNNLINNAIKFTQ---------------RGEIHIRAALIS------------- 770
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
+N T+ L +V DTG+G+ Q R+F F
Sbjct: 771 ----------------------ENNQTL------NLKFSVRDTGIGMDQSQQDRLFNAFT 802
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER-NSLDP 913
QADSS +R YGG+G+GL+IS+ LVELMGG + SE GS F+F F ER SL
Sbjct: 803 QADSSITRKYGGSGLGLTISKRLVELMGGALSVASEKDIGSEFTFNAYF---ERCASL-- 857
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST 973
+ + V +R L++D +V ++ L + S++ A + +
Sbjct: 858 ---EILSSVHRLNPMRVLIVDAHPTSQKVLIHYFGALSFDITATTSVEEAIA------RS 908
Query: 974 SVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDE 1033
S LPQ L++ + D L ++ + +S ++ L+ T+ DR+
Sbjct: 909 SALPQFDLLITNHCSQDAT------NRLHDLQKTAAIAVSASI----LMVTA---NDREN 955
Query: 1034 LKSDGIVTLLTKPLRLSVLIGCFQ--EDPESSKKLQQKRKKPSLGHL---LKGKQILVVD 1088
+LTKP LS LI + PE ++ L L ++G IL+V+
Sbjct: 956 HLETHNEIILTKPATLSKLINALLKIQQPEFPSTFALPERRIDLYQLAAPIRGAHILLVE 1015
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQI 1148
D+ +N+ +A L + G IV + G A L FDA MD+ MP MDGF++T I
Sbjct: 1016 DDEINQEIATEFLVRSGLIVVTANNGAEAF-ALVQQQAFDAVLMDIHMPVMDGFESTRLI 1074
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
R L A G++ +PI+A++A + GM D+VSKPF+
Sbjct: 1075 RTL--------AQGKT------------IPIIALSASAMAHEKLNSSSAGMSDHVSKPFD 1114
Query: 1209 DEQLYTAVARFF 1220
QL T + ++
Sbjct: 1115 PAQLITTLLKWI 1126
>gi|381167829|ref|ZP_09877034.1| Putative two-component sensor histidine kinase, unorthodox system
[Phaeospirillum molischianum DSM 120]
gi|380682905|emb|CCG41846.1| Putative two-component sensor histidine kinase, unorthodox system
[Phaeospirillum molischianum DSM 120]
Length = 1087
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 191/626 (30%), Positives = 302/626 (48%), Gaps = 104/626 (16%)
Query: 601 VENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
+ +D E+ + + +AEA ++AKS+FLAT+SHEIRTPMNGV+GM +L+DT+L Q +A
Sbjct: 437 LSSDITELQQARQQAEAGNLAKSEFLATMSHEIRTPMNGVIGMTGLLLDTKLTEEQRIFA 496
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
QT S + L+S+IND+LD +K+E+ RL+ E F + +++ V+ + S + + I+L
Sbjct: 497 QTIRESSESLLSIINDILDLSKMEASRLDFEETSFEIRPLVEGVIDILSPRVRGRDIDLT 556
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
+ V GDPGR RQ++ NLVGN++KFT+ G I + V +AD + +L
Sbjct: 557 CLIPAGARGVFRGDPGRLRQVLLNLVGNAVKFTE-SGTISIVVAVADGRDGRT-----IL 610
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
+ V +T G P + + ++ F D
Sbjct: 611 TAT----------VTDTGIGIPDAAKPRMFDTFTQAD----------------------- 637
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
+S +R +GG+G+GL+I + +V+ MGGEIGF S G GSTF F
Sbjct: 638 -----------------ASMARRFGGSGLGLAICKRIVDWMGGEIGFESREGKGSTFWFK 680
Query: 901 VTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM 960
V + + +E G++ LV+DD ++ R L+ V +S
Sbjct: 681 VPILRSDETPSEAAGG------AELDGVKVLVVDDTQTNRDILRQQLEGWGARVTAFDSA 734
Query: 961 QLACSYLSDTCSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKI 1019
+A + + +T+ P A+VL D EI GL L +L+ ++ LP
Sbjct: 735 AIAIEAIRN-ANTAGQPFDAVVL---DHLMPEISGLDLTVLLRSD------PLTATLP-- 782
Query: 1020 FLLATSIS-ETDRDELKSDGIVTLLTKPLRLSVLIG----CFQEDP-ESSKKLQQKRKKP 1073
++ATS T + L+ I +L KP+R S L+ C P ++ + + P
Sbjct: 783 LVMATSADLATLQPRLERLRIDEVLVKPVRQSALLNAMLRCLGRPPIDTPQTIVPAADFP 842
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
L+ ILV +DN +N++VA G L K G D G AV+++ +D MD
Sbjct: 843 IATTPLR---ILVAEDNAINQQVAVGLLAKLGHRADVADDGAEAVERVA-AGEYDLVMMD 898
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP +DG AT IR L + V I+AMTA+ + +
Sbjct: 899 MQMPHIDGLGATRLIRALPAPKAK-------------------VTIIAMTANAMSDDRDT 939
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
C+ GMDDY+SKP + ++L +AR+
Sbjct: 940 CLAAGMDDYISKPIDLKRLTDMIARW 965
>gi|409438237|ref|ZP_11265324.1| Sensor protein [Rhizobium mesoamericanum STM3625]
gi|408750103|emb|CCM76491.1| Sensor protein [Rhizobium mesoamericanum STM3625]
Length = 944
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 194/616 (31%), Positives = 286/616 (46%), Gaps = 112/616 (18%)
Query: 611 LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDL 670
L +RAEAAD KS+FLA +SHEIRTPMNGVLGM ++L T+LD Q + SG L
Sbjct: 398 LLSRAEAADRVKSEFLANMSHEIRTPMNGVLGMAELLAKTDLDTRQKTFIDIIVKSGNAL 457
Query: 671 ISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV 730
+++IND+LD +KI++G++ F+L + +++V +L SS A++K IEL + + +P
Sbjct: 458 VTIINDILDFSKIDAGKMRLRPTTFNLLEAIEDVATLLSSTASEKNIELLVRTAPDLPSA 517
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHK 790
VIGD GRFRQIITNLVGN++KFT+ +GH+ + DV +D+++
Sbjct: 518 VIGDAGRFRQIITNLVGNAVKFTE-RGHVLL------DVGFAPGAQDEIMAS-------- 562
Query: 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850
+ VEDTG+GIP + IF
Sbjct: 563 -----------------------------------------IRVEDTGIGIPDDKLESIF 581
Query: 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNS 910
F Q DSS++R + GTG+GL+I+ LV+L GG + S PG GS FS + F
Sbjct: 582 DKFSQIDSSSTRRHEGTGLGLAITAGLVDLFGGYLEVDSRPGEGSVFSVNLPFVVAA-AQ 640
Query: 911 LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDT 970
L PK P +G LV+DD ++ ++ L A A + L
Sbjct: 641 LAPK-----PLPVNVKGAHVLVVDDNAVNRQILTEQLALWGFDGAAAEDGPAAFAVLEAA 695
Query: 971 CSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
+ +D V D +I G+ + ++ R E L IFL + +S T
Sbjct: 696 HEFGLA-------VDAVVLDYQIPGMNGAEIARKLRADSRFE---RLAIIFLTSMDMSGT 745
Query: 1030 DRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQ-----------------QKRKK 1072
+++ +G L+ KP R +VL + +S+ Q + +
Sbjct: 746 EKEFAALNGQAYLM-KPARANVLRKTIADVVRASRTKQVCAAAIMQSSAEAMPSPLPKAE 804
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
PS + +LV +DN VN+ V L+ G V G+ AVD H M
Sbjct: 805 PSATAPTELVDVLVAEDNDVNQIVFTQILRGSGHSFLVVGNGQEAVDAWHR-HTPRIIMM 863
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASN 1191
D+ MP M+G AT IR E G H VPI+ +TA ++A
Sbjct: 864 DVSMPVMNGHDATRAIRDRER-------------------GQGHRVPIIGVTAHALEADR 904
Query: 1192 EQCMKCGMDDYVSKPF 1207
+ C++ GMDDY+SKP
Sbjct: 905 DLCLEAGMDDYMSKPI 920
>gi|386823183|ref|ZP_10110338.1| hybrid sensory histidine kinase BarA [Serratia plymuthica PRI-2C]
gi|386379970|gb|EIJ20752.1| hybrid sensory histidine kinase BarA [Serratia plymuthica PRI-2C]
Length = 908
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 188/661 (28%), Positives = 303/661 (45%), Gaps = 141/661 (21%)
Query: 589 HIFHAAINRIAQVENDYHEMME--------------------------LKARAEAADVAK 622
H+ IN +A YHE M+ K RA+ A K
Sbjct: 233 HMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 292
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S+FLA +SHE+RTP+NGV+G + ++ TE+ Q DY QT S +L+++INDVLD +K
Sbjct: 293 SEFLANMSHELRTPLNGVIGFTRQMLKTEMSVTQTDYLQTIERSANNLLTIINDVLDFSK 352
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
+E+G+L E +PF L + LD V+ L + A++KG+EL + V + VPE VIGD R +QII
Sbjct: 353 LEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDSLRLQQII 412
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
TNL+GN+IKFT+ G+I + V L D++D
Sbjct: 413 TNLLGNAIKFTE-TGNIDIRVELR-------DLQDH------------------------ 440
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
+++L V + DTG+GI Q ++F F QAD+S SR
Sbjct: 441 ------------------------QVELEVQIHDTGIGISERQQSQLFQAFRQADASISR 476
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922
+GGTG+GL I++ LV+ MGG+I F S+ GSTF F +T L P +
Sbjct: 477 RHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITL------ELHEGMLSLPPSL 530
Query: 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQ--LA 980
+ RG I+ + AE T N + + ++ + + + LP+
Sbjct: 531 PDLRGKTLGYIEANPMAAEAT-------------LNMLSVTSLVITHSPTLAQLPKKNYD 577
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV 1040
+L+ + ++ L H + + K L+I+ ++ L S+ + ++LK G +
Sbjct: 578 FLLVGVPIPFRD-NLTQH----ESKLKAALDIA---GRVILALPCQSQINAEQLKQQGAI 629
Query: 1041 TLLTKPLRLSVLIGCFQ-EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
L KP+ + L + E P ++++ P ++ VDDN N ++
Sbjct: 630 GCLIKPITSNRLFPLLRMETPLRLLAAPERKRLP--------LTVMAVDDNPANLKLIGT 681
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
L + + G A+ L + D MD+QMP +DG + + IR L + +
Sbjct: 682 LLAEQVEKTLLCESGEEAL-ALARDNVLDLILMDIQMPNIDGIRTSELIRQLPHHNS--- 737
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
PI+A+TA + E ++ GMDDY++KP ++ L +AR+
Sbjct: 738 -----------------TPIVAVTAHAVSGEREHLLQAGMDDYLAKPIDEAMLTRVLARY 780
Query: 1220 F 1220
+
Sbjct: 781 Y 781
>gi|149909590|ref|ZP_01898243.1| hypothetical protein PE36_12412 [Moritella sp. PE36]
gi|149807294|gb|EDM67247.1| hypothetical protein PE36_12412 [Moritella sp. PE36]
Length = 903
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 195/629 (31%), Positives = 305/629 (48%), Gaps = 112/629 (17%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
++++ K AE A+VAKS FLA +SHEIRTP+NGV+GM +L +T+L +Q D+ NS
Sbjct: 367 QIIQAKESAEQANVAKSSFLANMSHEIRTPLNGVIGMSNILSNTKLTPSQQDHLAIIENS 426
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+ LIND+LD +KIESG L L +V+ + +++ + A K ++ ++ ++
Sbjct: 427 SQTLLILINDILDFSKIESGHLAITNHRCDLREVIYDTVAIITPSAAAKNLDFSVNIAPE 486
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P + D R RQ++ NL+ N++KFT D G + +++ KV+E S
Sbjct: 487 LPNEFLLDEHRLRQVLMNLLSNAVKFT-DSGQVSLTL------------SSKVIENS--- 530
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
R +L +V DTG GI + Q
Sbjct: 531 ----------------------------------------RSELYFSVADTGTGIEEDKQ 550
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+IF PF Q D S +R +GGTG+GL+IS LVELMGGEIG S G GS F FT+ E
Sbjct: 551 QKIFEPFTQEDGSITRQFGGTGLGLAISTQLVELMGGEIGVDSTKGQGSNFYFTI---EA 607
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
E + + + Q+ VP + + ++ +I AE++R ++ + +Y
Sbjct: 608 EFTA-EVRVQKIVPTNTIVTVISNEMVFCDAICAELSRNNITDIT-----------TVAY 655
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHY---MLKQQRRKGGLEISRNLPKIFLLA 1023
D S+ + I+ V DK+ ++ Y +K + R L F+L
Sbjct: 656 TQDLFSS--------LTINDRVEDKDANHLIIYCQNSIKLTLKDIDFLSQRTLKYSFVLV 707
Query: 1024 TSISETDRD-ELKSDGIVTLLTKPLRLSVLIGCFQEDP-ESSKKLQQKRKKPSL--GHLL 1079
S ++ D + + DG+VT+ RL +I ED ES + + + HL
Sbjct: 708 QSHADDKYDFDSRIDGLVTMPLLGNRLLKVINSALEDQLESQTSIAASLSEEATLEQHLQ 767
Query: 1080 KGKQ--------ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP-PHNFDAC 1130
K ILVV+DN++N++VA LK+ G + G+ AV+ ++ H + A
Sbjct: 768 MEKDMSPKDNSLILVVEDNLINQKVATLLLKQCGYDSHVANNGKEAVEMVSSGQHKYKAI 827
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD MP MDGF AT QIR E +SS+ + PI+A+TA V+ A
Sbjct: 828 LMDCMMPVMDGFTATEQIREWE----------KSSS-------VAPTPIIALTASVLDAD 870
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
++C GM+DYV+KPF+ + L + R
Sbjct: 871 IQRCFDVGMNDYVAKPFKKDVLIDKIERL 899
>gi|357024389|ref|ZP_09086542.1| hybrid sensory histidine kinase [Mesorhizobium amorphae CCNWGS0123]
gi|355543743|gb|EHH12866.1| hybrid sensory histidine kinase [Mesorhizobium amorphae CCNWGS0123]
Length = 1412
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 221/755 (29%), Positives = 336/755 (44%), Gaps = 175/755 (23%)
Query: 522 DTTNASAPINMYGPD-----VTDTGLLRVS-------NLDFGDPSRKHEMHCRFKQKPPV 569
D + ++GPD +D +LR + D S +H+ F +K
Sbjct: 766 DEATGKTDVEIFGPDGEAFVASDLAVLRTGETQEIEETVTLADGSVRHQ----FARK--- 818
Query: 570 PWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATV 629
A+ AS G + L+G + I +++ E+ E + RA AD AKS+FLA +
Sbjct: 819 --GAMIASDGSL---YLIG-----STTDITELKQREAELSEARQRAVLADRAKSEFLANM 868
Query: 630 SHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLE 689
SHEIRTPMNGVLGM ++L ++LD Q + SG L+++IND+LD +KI++G+L
Sbjct: 869 SHEIRTPMNGVLGMAELLAKSDLDPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLV 928
Query: 690 PEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNS 749
+ PF+L + +++V +L S++A +K +EL + V + IGD GR RQI+TNL+GN+
Sbjct: 929 LDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVQPGLESQFIGDVGRVRQIVTNLLGNA 988
Query: 750 IKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKS 809
+KFT D+GH+ V V VR K + V +T G P
Sbjct: 989 VKFT-DEGHVLVDVT---GVRVPAGTKLTI-------------SVTDTGIGIPEEKLKAV 1031
Query: 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGI 869
+E F +D +S++R + GTG+
Sbjct: 1032 FEKFNQVD----------------------------------------TSSTRRHEGTGL 1051
Query: 870 GLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP-DVSEFRGL 928
GL+I+ LVELM GEIG S G GSTF FTVT E+ Q+ +P DV+ G
Sbjct: 1052 GLAITSRLVELMEGEIGVESAEGKGSTFWFTVTLPRAEQQG----GQRIMPVDVT---GA 1104
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
R L++DD ++ + S Q+A S+ D+C+ + VLI
Sbjct: 1105 RVLIVDDNAVNRSIL---------------SEQMA-SWTFDSCAAESGAEGLKVLIAAAA 1148
Query: 989 WDKEIG-LVLHYMLKQQRRKGGLEISRNLPKI----FLLATSISETDRDELKSD-GIVTL 1042
+ + +VL Y + I RN + ++ TS+ ++ + D GI
Sbjct: 1149 YGVPVDCVVLDYQMPNMSGAEMARIVRNTAGLAHTPIIMLTSVDQSLANTSYRDLGIDAQ 1208
Query: 1043 LTKPLRLSVLI-------------------------GCFQ----EDPESSKKLQQKRKKP 1073
L KP R SVL+ G Q P S+ ++ + + P
Sbjct: 1209 LIKPARSSVLLETLVATIQRHHHSEEANRVLPLASGGGAQALSTAQPSSTASVRAQLQPP 1268
Query: 1074 SLGHLL-----KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD---KLTPPH 1125
+ + +G ILV +DN VN+ V L + G V GR A+D +L P
Sbjct: 1269 PVRARVRATGERGLDILVAEDNEVNQMVFTQILGETGYGFEIVGNGRKALDAFGRLNPRM 1328
Query: 1126 NFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTAD 1185
MD+ MPEM+G +AT IR LE E HVPI+ +TA
Sbjct: 1329 ----ILMDVSMPEMNGLEATAAIRRLEEETGT------------------HVPIVGVTAH 1366
Query: 1186 VIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
++ E+C++ GMDDY+ KP L + R+
Sbjct: 1367 ALKGDRERCLEAGMDDYLPKPISPRALLEKLERWI 1401
>gi|428308622|ref|YP_007119599.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428250234|gb|AFZ16193.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 1157
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 197/635 (31%), Positives = 304/635 (47%), Gaps = 78/635 (12%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
++ + KA +E A KSQFLA +SHEIRTPMN ++GM +L+ TEL Q D+ TA +
Sbjct: 405 QQLEKAKAESEEATRIKSQFLANMSHEIRTPMNAIIGMTGLLLTTELTPQQRDFVTTAQS 464
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S + L++LIND+LD +KIESG +E E F+L ++ L + + KA +KGIELA +
Sbjct: 465 SSEALLALINDILDLSKIESGSVELEKQAFNLQSCIEESLDILALKAAEKGIELAYGMHP 524
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD-DVRSKVDVKDKVLEKSL 784
+ P +++GD R RQI+ NLV N++KFTQ G + VSV + +
Sbjct: 525 QTPSIIVGDVTRLRQILVNLVSNAVKFTQ-TGEVVVSVTAKELEGDKGDKGDKGDKGDKG 583
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
+ + ++ YN ++ + + V+DTG+GIP +
Sbjct: 584 EKILYTNETCYN-------------------------LQPATKFEFQFAVKDTGIGIPPD 618
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
R+F F Q D+ST+R YGGTG+GL+I + L E+MGG + S+ GSTF FT+
Sbjct: 619 RIDRLFKSFSQVDASTTRKYGGTGLGLAIGKQLSEMMGGRMWVESQVNRGSTFYFTLVAA 678
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
+S P P +F+G R L++DD ++ LQ M ++ A S A
Sbjct: 679 ATADSS--PMNSDNFP--PQFQGKRLLIVDDNDTYRQILTQQLQSWGMLIYGAASAAEAF 734
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
+L+ L + L+D + + GL L ++ + LP + L T
Sbjct: 735 DWLNQGQP------LDMALLDMQMPGMD-GLTLATKIRSYSNY------QTLPLVLL--T 779
Query: 1025 SISETDR---DELKSDGIVTLLTKPLRLSVLIGCFQEDPESS-------------KKLQQ 1068
SI+ +R + D + LTKP++ S L + S LQ
Sbjct: 780 SINGLERANQTHVPVD-LAAFLTKPIKQSQLDSVLNQILAGSSISVNPLPVTLPENPLQL 838
Query: 1069 KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
+ P +IL+ +DN VN++VA LK+ G V G +D + ++D
Sbjct: 839 ATQLP--------LRILLAEDNGVNQKVALHLLKRIGYQADVVSNGLEVLDAVK-RKSYD 889
Query: 1129 ACFMDLQMPEMDGFQATWQI-RHLE-----NEINEQIASGESSAEMFGNVGLWHVPILAM 1182
MD+QMP MDG AT I + L E N+ + + + I+AM
Sbjct: 890 VVLMDVQMPLMDGLTATRCICQELSGDGEFGEANQNSQNSDRNQPSKPATSHKRPRIIAM 949
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
TA+ +Q E+C+ GMDDY+ KP + L A++
Sbjct: 950 TANAMQGDREECLNAGMDDYLCKPISLKALIQALS 984
>gi|260365946|ref|ZP_05778436.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
gi|308113209|gb|EFO50749.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
Length = 742
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 180/601 (29%), Positives = 290/601 (48%), Gaps = 110/601 (18%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T+L +Q DY QT S +L+
Sbjct: 91 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYLQTIEKSANNLL 150
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +K+E+G+L E +PF + L+ V++L ++ A++KG+E+ + V ++P +
Sbjct: 151 NIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGL 210
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDP R +QI+TNLVGNSIKFT+ R +DV ++ ++ +SV+
Sbjct: 211 VGDPLRIQQILTNLVGNSIKFTE---------------RGNIDVSVEMRSQAGDSVE--- 252
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
L V DTG+GI Q ++F
Sbjct: 253 --------------------------------------LQFMVRDTGIGISERQQAQLFQ 274
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF FT+ E
Sbjct: 275 AFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNSTEMPMS 334
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
D + +V G + L+++ A VT+ L + + V +S
Sbjct: 335 D------LIEVELLTGKQLLLVEPNMQAASVTQQILSQEGILVTYRSS------------ 376
Query: 972 STSVLPQLALVLIDKDVWDKE-IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
LP+ +++ +D + L + +Q +E ++ + ++ T +E
Sbjct: 377 ----LPE------NEEHYDYVLLNLAANQTYDEQSVAAWIEQAKRMAPSVIMGTPSTELA 426
Query: 1031 -RDELKSDGIVTLLTKPL-RLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVD 1088
D++ ++ + LTKPL R +L E E+ + + + L +L VD
Sbjct: 427 LADQIMTEHQIQCLTKPLSRRKLLQSLINEHVEAPQAITAPVETEESERL--PLTVLAVD 484
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQI 1148
DN N ++ LK+ VT G+ AV+ L +D FMD+QMP MDG A I
Sbjct: 485 DNPANLKLISALLKERVETVTACSNGQQAVN-LATEKKYDLIFMDIQMPLMDGVTACQNI 543
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
+ L E+N+ P++A+TA + ++ + GMDDY++KP E
Sbjct: 544 KEL--ELNKD------------------TPVIAVTAHAMAGERDRLLAAGMDDYLTKPIE 583
Query: 1209 D 1209
+
Sbjct: 584 E 584
>gi|392541327|ref|ZP_10288464.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas piscicida JCM
20779]
Length = 907
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 187/610 (30%), Positives = 291/610 (47%), Gaps = 113/610 (18%)
Query: 619 DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVL 678
D AKS FLA +SHEIRTP+NG+LGM +L L Q D+ QT HNSG+ L+SLINDVL
Sbjct: 258 DQAKSTFLANISHEIRTPLNGILGMTSLLARESLSKKQADFLQTIHNSGEHLLSLINDVL 317
Query: 679 DQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRF 738
D +KIESG++E E + F L+++++N + L+++KA +KG+E+ + I D R
Sbjct: 318 DFSKIESGKMEFENISFDLNELVENCVMLYANKAQEKGLEIVYNIEANAQVTCIADKTRI 377
Query: 739 RQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTL 798
QI+ NL+ N IKFT++ +V +H++ ++ V++ VL S
Sbjct: 378 TQILCNLISNGIKFTKEG---YVKIHVS---KTGVELPHTVLRFS--------------- 416
Query: 799 SGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858
V+DTG+GIP + ++F F Q +S
Sbjct: 417 -----------------------------------VKDTGIGIPKSGEHKLFDVFTQVES 441
Query: 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQY 918
+T+R YGGTG+GL+I + +VE +GGEIG+ S G GS F FT+ S P Q
Sbjct: 442 ATTRKYGGTGLGLAICKSIVEALGGEIGWNSRQGKGSEFFFTLPVRVNPTTS-SPYTQGE 500
Query: 919 VPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQ 978
+P RG + +DD S+ EV +++L+ M V + + +SD S
Sbjct: 501 LP---ALRGKTVVAVDDLSVNLEVIKHNLELWGMKVSTFQDPRDIEAIVSDAQSAD---- 553
Query: 979 LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL--ATSISETDRDELKS 1036
LV++D + + G+ L LK++ G P + L +T++S R+ +
Sbjct: 554 --LVILDYQMPEVN-GIELAAQLKEKLIYG--------PPMMLFSSSTTLSNNARNLFEH 602
Query: 1037 DGIVTLLTKPLRL--------SVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVD 1088
+ KP RL S L ++ + S Q + P L K ILV +
Sbjct: 603 -----IAYKPFRLSAFYDALMSTLFAGYRHESNSGST-QAIEQLPYLAENYPLK-ILVAE 655
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQI 1148
DN+VN + + L G + G+ A+DKL +D MD++MP +DG Q T
Sbjct: 656 DNLVNIELMKHYLGACGYKADFAENGQIALDKLCEKQ-YDLILMDMRMPVLDGLQTTR-- 712
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
E+F G I+A+TA+ A +QC+ GM D+++KP
Sbjct: 713 ------------------EVFRIYGDQAPQIVALTANATVADKKQCLATGMVDFLTKPVV 754
Query: 1209 DEQLYTAVAR 1218
+ L + + +
Sbjct: 755 EADLVSCLQK 764
>gi|359454681|ref|ZP_09243954.1| sensor protein [Pseudoalteromonas sp. BSi20495]
gi|358048281|dbj|GAA80203.1| sensor protein [Pseudoalteromonas sp. BSi20495]
Length = 1098
Score = 247 bits (631), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 191/630 (30%), Positives = 314/630 (49%), Gaps = 105/630 (16%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
H ++E KA AE A++AKS+FLA++SHEIRTPMNGVLGML ++D+ L+ Q + A N
Sbjct: 554 HSLIEAKALAEQANIAKSEFLASMSHEIRTPMNGVLGMLNFILDSPLNEKQQYQTRIALN 613
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+++IND+LD +K+++G+LE E + F+LH +L + L +++A KGIEL + ++D
Sbjct: 614 SANSLLNIINDILDFSKVDAGKLELEELEFNLHAMLGDFLETVAAQAYSKGIELILDITD 673
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VIGDPGR RQI+TNLV N++KFT H+ +V + K++ + N
Sbjct: 674 IKYPFVIGDPGRLRQILTNLVNNALKFT----HV-----------GEVQIIAKLIPTNGN 718
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
++ +V +T G PV + K +++F
Sbjct: 719 EIRFNC-QVKDTGIGIPVEQQAKLFKSFS------------------------------- 746
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q DSST+R YGGTG+GL+I + L LM GE+ S+ GS F F +T +
Sbjct: 747 ---------QVDSSTTRKYGGTGLGLAIVKKLCNLMQGEVEVKSDENKGSNFIFDITLKK 797
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
G+ K ++ +P + + G+ + +A V + L + V +++S ++A +
Sbjct: 798 GK------KTEKVMPPI-DITGINIQIACSNKSQANVLQKQLTQWGAIVIISSSAKIALN 850
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
+ P +V+ID + D GL L + L + NL +L T+
Sbjct: 851 TYEQFYTQHAHP-FDIVIIDTKLSDSN-GLTLGKTINDL----NLLSTANL----VLMTT 900
Query: 1026 ISETDRDE-LKSDGIVTLLTKPLR----LSVLIGCFQE----DPESSKKLQQKRKKPSLG 1076
I + + +E K +G KP+ ++L C E E+++ +K
Sbjct: 901 IDQFETNEHYKQNGFTAYFPKPMTTKDIFNLLTKCLPERNTLHSENTQTCTITKKPLGPN 960
Query: 1077 HLL--KGKQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHN---FDAC 1130
++ + +IL+ +DN +N+ VA LKK G ++V G+ +D L + +
Sbjct: 961 DIVWREDIRILLAEDNQINQIVAATTLKKMGISVVDIATNGKEVLDYLDQKNTIEPYSLI 1020
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD QMP MDG+QAT IR+ E A +++A + I+AMTA+ +
Sbjct: 1021 LMDCQMPVMDGYQATTLIRNNE-------ARDKANA----------ITIIAMTANAMTGD 1063
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+C+ GMDDY+SKP + L+ + ++
Sbjct: 1064 KTKCLDSGMDDYISKPIAQDILFEKLLKWL 1093
>gi|71909751|ref|YP_287338.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
gi|71849372|gb|AAZ48868.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
Length = 916
Score = 247 bits (631), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 194/618 (31%), Positives = 294/618 (47%), Gaps = 113/618 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K AEAA+ AKS FLA +SHEIRTPMNGV+GM + ++T L Q +Y A +S
Sbjct: 389 EVLRAKEAAEAANRAKSDFLANMSHEIRTPMNGVIGMTDLALETALTEEQREYLNIAKSS 448
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+++IND+LD +KIE+G+L+ E +PF LH ++ + L + +A++K IE+ +SD
Sbjct: 449 AESLLTVINDILDFSKIEAGKLQVEDIPFDLHRLIADTLKPLALRAHEKDIEI---LSD- 504
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
V+ D RF + G+ + Q V V+L + + + L+ L
Sbjct: 505 ----VVHDVPRF------VKGDPSRIRQ------VLVNLVGNAIKFTEQGEIALQADLMQ 548
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+Q+ G + V DTG+GI + Q
Sbjct: 549 LQN------------------------------------GHAVIHFAVRDTGIGISADKQ 572
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
+ IF F Q DSST+R YGGTG+GLSI R LVELMGG + SEPG GSTF F+V
Sbjct: 573 MLIFDAFAQEDSSTTRKYGGTGLGLSICRRLVELMGGTLWLHSEPGKGSTFHFSVQLQIS 632
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
E N++ V + G L++DD + + R L L + A+S + A +
Sbjct: 633 E-NAI-----PLVIHPVDVTGRHMLIVDDNATNRRILRGMLATLHVTCQEADSGKTALAL 686
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN-------LPKI 1019
+ + S Q +L+D + + + G E++R+ LP +
Sbjct: 687 MREQGS-----QFDCILLDAQMPEMD----------------GYELARHLHAEHPALPPM 725
Query: 1020 FLLATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDP-ESSKKLQQKRKKPS 1074
+L++ D + GI KP+ LS L F P ESS + + S
Sbjct: 726 LMLSSGALRGDALRCQEAGIAGFFAKPISSDELLSALGRLFDNSPKESSPEPSPLLTRHS 785
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
L + IL+V+D+ N+++A G L K G T G+ A+D L +FD MD+
Sbjct: 786 LREAQRVLNILLVEDHPTNQKLALGLLNKWGHHGTLAQNGQEALDILA-SQSFDIILMDM 844
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP M G +AT +IR E + L PI+AMTA +Q + C
Sbjct: 845 QMPVMSGVEATQRIRAREAAMQ-----------------LPRTPIIAMTAAAMQDDRDAC 887
Query: 1195 MKCGMDDYVSKPFEDEQL 1212
+ GMDDY++KP + ++L
Sbjct: 888 LAAGMDDYLAKPIKVKEL 905
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 28/144 (19%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKK-HGAIVTC--VDCGRAAVDKLTPPHN-FDACFMDLQM 1136
G+ +L+VDDN NRR+ G L H VTC D G+ A+ + + FD +D QM
Sbjct: 647 GRHMLIVDDNATNRRILRGMLATLH---VTCQEADSGKTALALMREQGSQFDCILLDAQM 703
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PEMDG++ RHL E + L P+L +++ ++ +C +
Sbjct: 704 PEMDGYELA---RHLHAE----------------HPAL--PPMLMLSSGALRGDALRCQE 742
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
G+ + +KP ++L +A+ R F
Sbjct: 743 AGIAGFFAKPISSDELLSALGRLF 766
>gi|262164518|ref|ZP_06032256.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223]
gi|262026898|gb|EEY45565.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223]
Length = 1053
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 196/636 (30%), Positives = 294/636 (46%), Gaps = 129/636 (20%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ E KA+AE A KS FLA +SHEIRTPMN ++GM + + TEL Q DY H+S
Sbjct: 283 ELNEAKAKAEDAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHSS 342
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L+ +IND+LD +KIE+G+L E + F L +VL NV + KA KG+EL +
Sbjct: 343 ATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPRE 402
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV-----RSKVDVKDKVLE 781
+P L+G+ ++ Q V ++L ++ + ++ V +V E
Sbjct: 403 IPH--------------KLIGDPLRIGQ------VVINLVNNAVKFTEQGEISVSVQVGE 442
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
+ Q GRIKLL V DTG+G+
Sbjct: 443 R-----------------------------------------QPGRIKLLFHVSDTGIGM 461
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
+ +F F QAD ST+R YGGTG+GLSISR LVELM GEI S+P GS F+F
Sbjct: 462 TEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSQPDMGSCFTFNA 521
Query: 902 TFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ 961
F E + Q+ VPDV +RAL++DD H +Q
Sbjct: 522 WFDVDENQA---PHQKVVPDV--LGSIRALIVDDND-----------------HAREILQ 559
Query: 962 LACSYLSDTCSTSVLPQLALVLIDKDVWD-KEIGLVLHYMLKQQRRKGGLEISRNL---- 1016
S L+ T+ AL +++ V + K LV +M G+E +R +
Sbjct: 560 DMLSMLAIPPETAANGVEALRKLEQGVANGKPFNLV--FMDWNMPEMNGIETTRAIRHSF 617
Query: 1017 -----PKIFLLATSISETDRDELKSD-GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKR 1070
PK+ ++ T+ + D ++ S+ I LTKP+ S L SK
Sbjct: 618 SAEHQPKV-VIVTAYDKDDLQQMISEIDICGFLTKPIGQSHLFDLLVNLFVGSKAQASVA 676
Query: 1071 KKPSLGHL---LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT----P 1123
+ S H ++G ++L+ +DN +N+++A ++ +VT + G+ A+D L
Sbjct: 677 ARISHHHEHGDIRGLRVLLTEDNEINQQIALELMEAKELVVTIANNGKEALDHLAHSLET 736
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
FD FMDLQMP MDG++A IR + P++AMT
Sbjct: 737 QQRFDIIFMDLQMPVMDGYEAARHIRSTPEHDD--------------------TPLIAMT 776
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
A + E+C+ GM+D+VSKP + + LY +A++
Sbjct: 777 AHAMVEERERCLSLGMNDHVSKPIDPDLLYRTIAKW 812
>gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
Length = 1391
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 211/673 (31%), Positives = 306/673 (45%), Gaps = 170/673 (25%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ E + RA AD AKS+FLA +SHEIRTPMNGVLGM ++L + LD Q + S
Sbjct: 825 ELSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTDIIVKS 884
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G L+++IND+LD +KI++G++ + PF+L + +++V +L S++A +K +EL + V R
Sbjct: 885 GNALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVEPR 944
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+ + +GD GR RQI+TNL+GN++KFT D+GH+ V V ++V + +
Sbjct: 945 LESLFVGDVGRIRQIVTNLLGNAVKFT-DEGHVLVDV-----------TGERVPTGTRLT 992
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ V +T G P +E F +D ++T
Sbjct: 993 I-----SVTDTGIGIPEEKLKLVFEKFSQVDTSST------------------------- 1022
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE- 905
R + GTG+GL+I+ LVELMGG IG S G GSTF FTVT
Sbjct: 1023 ---------------RRHEGTGLGLAITSRLVELMGGTIGVESAEGKGSTFWFTVTLPRA 1067
Query: 906 GERNSLDPKWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
G++N Q+ +P DV+ G R L++DD AV+ A +
Sbjct: 1068 GQQNG-----QRIMPVDVT---GARVLIVDDN----------------AVNRAILTEQMT 1103
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIG-LVLHYMLKQQ---------RRKGGLEISR 1014
S+ D+C+ + VLI + + +VL Y + + R GGL
Sbjct: 1104 SWTFDSCAAESGAEGLKVLIAAAAYGVPVDCVVLDYQMPEMSGAEMARIVRNTGGLA--- 1160
Query: 1015 NLPKIFLLAT--SISETDRDELKSDGIVTLLTKPLRLSVLIGCF---------------- 1056
+ P I L + S++ T +L GI L KP R SVL+
Sbjct: 1161 DTPIIMLTSVDQSLANTSYRDL---GIDAQLIKPARSSVLLETLVATIQRHRHATDSHAV 1217
Query: 1057 ----QEDP-----------ESSKKLQQKRKKPSL------GHLLKGKQILVVDDNMVNRR 1095
E P E +LQ +P L GH L ILV +DN VN+
Sbjct: 1218 QPLAAERPDVPQPPPLALSEQRAQLQPPPVRPRLPATGGDGHRL---DILVAEDNEVNQM 1274
Query: 1096 VAEGALKKHGAIVTCVDCGRAAVD---KLTPPHNFDAC--FMDLQMPEMDGFQATWQIRH 1150
V L + G V GR A+D KL P C MD+ MPEM G +AT IR
Sbjct: 1275 VFTQILGETGYGFEIVGNGRKALDAFGKLNP------CMILMDVSMPEMSGLEATAAIRQ 1328
Query: 1151 LENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDE 1210
LE + HVPI+ +TA ++ E+C++ GMDDY+ KP
Sbjct: 1329 LEQQTGT------------------HVPIVGVTAHALKGDRERCLEAGMDDYLPKPISPR 1370
Query: 1211 QLYTAVARFFMSG 1223
L V R+ +G
Sbjct: 1371 ALLEKVERWLGAG 1383
>gi|422910139|ref|ZP_16944781.1| sensory box protein [Vibrio cholerae HE-09]
gi|341633891|gb|EGS58672.1| sensory box protein [Vibrio cholerae HE-09]
Length = 1331
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 192/621 (30%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T+LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S + +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVGQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K + +++ F DN+ T
Sbjct: 771 AQDKLNDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGEGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + H
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAHHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+D+L +FD MD+QMP M
Sbjct: 990 VGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALDRLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGVTATEYIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
++++SKP E ++ Y + F
Sbjct: 1089 NEHLSKPIEVDKFYQVLRHFL 1109
>gi|407940219|ref|YP_006855860.1| multi-sensor hybrid histidine kinase [Acidovorax sp. KKS102]
gi|407898013|gb|AFU47222.1| multi-sensor hybrid histidine kinase [Acidovorax sp. KKS102]
Length = 1624
Score = 247 bits (630), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 192/614 (31%), Positives = 290/614 (47%), Gaps = 111/614 (18%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E+ K AE + KS FLA +SHEIRTPMN ++GM + + + L Q DY
Sbjct: 848 QELRRAKELAEESTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGLSPRQHDYVSKIQQ 907
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
+G+ L+ +IND+LD +KIE+G+L E PF L +L++V + KA KG+EL V+
Sbjct: 908 AGQHLLGVINDILDFSKIEAGKLVVERQPFLLDRMLESVSDVVGYKAGAKGLELVCDVAS 967
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
VP NLVG++++ G I ++
Sbjct: 968 DVP--------------PNLVGDALRL----GQILIN----------------------- 986
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLG-RIKLLVTVEDTGVGIPLE 844
+ ++ + T SG ++ +E++G +++L V DTG+G+ E
Sbjct: 987 ---YANNAIKFTESG-------------EISIAVRLVEEMGNQVRLRFEVRDTGIGLTDE 1030
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
R+F F QAD+ST+R YGGTG+GL+I + L ELMGGE+G S G GSTF +V
Sbjct: 1031 QMARLFQSFQQADTSTTRRYGGTGLGLAICKSLAELMGGEVGVESRFGKGSTFWVSVPLE 1090
Query: 905 EG--ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
G R L P PD+ RG R LV+DD A V LQ + V A+S
Sbjct: 1091 RGAPARVLLPP------PDL---RGTRVLVVDDNHTAATVLSDMLQAMGFVVEQAHSGLE 1141
Query: 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI--F 1020
A L ++ + L+L+D W H G S +PK+
Sbjct: 1142 ALDRLRESMAHQ--QPFGLLLLD---W--------HMPGMDGVELAGHIRSLGMPKVPQM 1188
Query: 1021 LLATSISETD-RDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS----- 1074
L+ T+ D ++ GI T+L KP+ S+L + E+S +++ P+
Sbjct: 1189 LMVTAYGREDVMRAARAQGIETVLIKPVNASLLFDTLMQPLEASGSERRRAVTPAPAADE 1248
Query: 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134
L ++G +L+V+DN +N+ VA L G V + G+ A+D + H +DA MD+
Sbjct: 1249 LPLDIRGASVLLVEDNALNQMVAMELLLDAGFAVDVAENGQIAIDHIERKH-YDAVLMDM 1307
Query: 1135 QMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQC 1194
QMP MDG AT +R GN +PI+AMTA+ ++A ++C
Sbjct: 1308 QMPVMDGETATRLLR--------------------GNPRYAQLPIIAMTANAMEADRQRC 1347
Query: 1195 MKCGMDDYVSKPFE 1208
GM+D+V+KP E
Sbjct: 1348 FAAGMNDHVAKPIE 1361
>gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|383322325|ref|YP_005383178.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325494|ref|YP_005386347.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491378|ref|YP_005409054.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436645|ref|YP_005651369.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803]
gi|451814742|ref|YP_007451194.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|339273677|dbj|BAK50164.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803]
gi|359271644|dbj|BAL29163.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274814|dbj|BAL32332.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277984|dbj|BAL35501.1| hybrid sensory kinase Hik21 [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958508|dbj|BAM51748.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|451780711|gb|AGF51680.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
Length = 1261
Score = 247 bits (630), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 194/629 (30%), Positives = 297/629 (47%), Gaps = 125/629 (19%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EM K AE A K+ FLA +SHEIRTPMN V+GM + + T+L Q +Y S
Sbjct: 512 EMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYLHKIRFS 571
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G+ L+ +IND+LD +KIE+G+L E + F L VLDNV +L S KA KG+EL +
Sbjct: 572 GQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRN 631
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P + +G+ ++ G I ++
Sbjct: 632 LPR--------------HFIGDPLRL----GQILIN------------------------ 649
Query: 787 VQHKSDKVYNTLSG-FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
+ ++ V T G +V R + + + ++ L + V+DTG+GI E
Sbjct: 650 --YANNAVKFTEQGDITIVVRLQEYRDQDVV-------------LYLAVKDTGIGIKPEH 694
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
+F F QADSST+R +GGTG+GL+I + + ELMGGE+G SE G GSTF V
Sbjct: 695 IANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVCL-- 752
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
+++++ P D+ G R LV+DD V + L++++ V S A +
Sbjct: 753 -QKSNVIPHRLVLSKDL---EGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALN 808
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL--------P 1017
+L++ + P ++V ID W Q GLE++R L P
Sbjct: 809 FLAEADREN-HPH-SIVFID---W-------------QMPNMDGLEVARRLKAMGLNHQP 850
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE---DPESSKKLQQKRKKPS 1074
IF++ E + KS GI +L KP+ SVL DP + Q+ R+
Sbjct: 851 SIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARVLGDPTALA--QEMRQSSG 908
Query: 1075 LG---------HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPH 1125
+G ++G +IL+V+DN +N+ VA L+ G V G A+++L +
Sbjct: 909 IGAEDLALEKLRRIRGARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLN-NN 967
Query: 1126 NFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTAD 1185
+ MD+QMPEMDG +AT IR N +PI+AMTA+
Sbjct: 968 AYALVLMDMQMPEMDGIEATIAIRQ--------------------NPRYAQLPIVAMTAN 1007
Query: 1186 VIQASNEQCMKCGMDDYVSKPFEDEQLYT 1214
V+Q E+C++ GM+D++ KP E E+L+
Sbjct: 1008 VMQGDRERCLQAGMNDHLGKPIEPEELWN 1036
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 30/147 (20%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV------DKLTPPHNFDACFM 1132
L+GK++LVVDDN R V + L++ +V V+ G A+ D+ PH+ F+
Sbjct: 768 LEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSI--VFI 825
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP-ILAMTADVIQASN 1191
D QMP MDG + +++ + GL H P I +TA +
Sbjct: 826 DWQMPNMDGLEVARRLKAM---------------------GLNHQPSIFIVTAYGREELF 864
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ G+DD + KP L+ ++AR
Sbjct: 865 VKAKSLGIDDVLVKPISPSVLFDSLAR 891
>gi|270263998|ref|ZP_06192266.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13]
gi|270042191|gb|EFA15287.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13]
Length = 908
Score = 247 bits (630), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 188/660 (28%), Positives = 302/660 (45%), Gaps = 139/660 (21%)
Query: 589 HIFHAAINRIAQVENDYHEMME--------------------------LKARAEAADVAK 622
H+ IN +A YHE M+ K RA+ A K
Sbjct: 233 HMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 292
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S+FLA +SHE+RTP+NGV+G + ++ TE+ Q DY QT S +L+++INDVLD +K
Sbjct: 293 SEFLANMSHELRTPLNGVIGFTRQMLKTEMSVTQTDYLQTIERSANNLLTIINDVLDFSK 352
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
+E+G+L E +PF L + LD V+ L + A++KG+EL + V + VPE VIGD R +QII
Sbjct: 353 LEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDSLRLQQII 412
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
TNL+GN+IKFT+ G+I D+R + L +Q +
Sbjct: 413 TNLLGNAIKFTE-TGNI--------DIRVE-----------LRGLQER------------ 440
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
+++L V + DTG+GI Q ++F F QAD+S SR
Sbjct: 441 ------------------------QVELEVQIHDTGIGISERQQSQLFQAFRQADASISR 476
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922
+GGTG+GL I++ LV+ MGG+I F S+ GSTF F +T L P +
Sbjct: 477 RHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITL------ELHEGMLSLPPSL 530
Query: 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALV 982
+ RG I+ + AE T N + + ++ + + + LP+
Sbjct: 531 PDLRGKTLGYIEANPMAAEAT-------------LNMLSVTPLVITHSPTLAQLPK---- 573
Query: 983 LIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI-SETDRDELKSDGIVT 1041
KD +G+ + + + +G L + + +LA S+ + ++LK G +
Sbjct: 574 ---KDYDFLLVGVPIPFRDNLAQHEGKLMAALKIADRVILALPCQSQINAEQLKQQGAIG 630
Query: 1042 LLTKPLRLSVLIGCFQ-EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGA 1100
L KP+ + L + E P+ + ++ P ++ VDDN N ++
Sbjct: 631 CLIKPITGNRLFPLLRMETPQRLIAAPEPKRLP--------LTVMAVDDNPANLKLIGTL 682
Query: 1101 LKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160
L + + G A+ L + D MD+QMP +DG + + IR L + +
Sbjct: 683 LAEQVEKTLLCESGEEAL-ALARDNVLDLILMDIQMPNIDGIRTSELIRQLPHHNS---- 737
Query: 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
PI+A+TA + E ++ GMDDY++KP ++ L +AR++
Sbjct: 738 ----------------TPIVAVTAHAVSGEREHLLQAGMDDYLAKPIDEAMLTRVLARYY 781
>gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 1587]
gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 1587]
Length = 1331
Score = 247 bits (630), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 192/621 (30%), Positives = 288/621 (46%), Gaps = 113/621 (18%)
Query: 610 ELKARAEAADV---AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
EL+ EAAD AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDNV ++ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S ++ +V ++ V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQVTLRFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K D +++ F DN+ T
Sbjct: 771 AQDKLDDLFDA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGG+I SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVC--- 832
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
D K + V R LV+DD + A H+ +S+ A +
Sbjct: 833 --GLQDAKMRDISQPVHGLADKRVLVVDDN--------------DSARHILDSLLTAMRF 876
Query: 967 LSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
T S L ++ D D + + L + + GL R K FL+
Sbjct: 877 NVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGL---RGHMKSFLVTA 933
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHL-----L 1079
E + + S + L+ KP+ S L+ +S ++ R K + +
Sbjct: 934 YGREINLEGENSKLVDALIVKPVNPSNLLDAIV----TSYGIEHVRHKTNEAYHNSRPNF 989
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G+ +L+V+DN VN+ VA G L+ G V + G+ A+++L +FD MD+QMP M
Sbjct: 990 AGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVM 1048
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR N +PI+AMTA+ + E+C++ GM
Sbjct: 1049 DGITATEHIR--------------------ANPRWQSLPIVAMTANAMAIDIERCLQAGM 1088
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
+D++SKP E ++ Y + F
Sbjct: 1089 NDHLSKPIEVDKFYQVLRHFL 1109
>gi|336314746|ref|ZP_08569662.1| PAS domain S-box/PAS domain S-box [Rheinheimera sp. A13L]
gi|335881045|gb|EGM78928.1| PAS domain S-box/PAS domain S-box [Rheinheimera sp. A13L]
Length = 1547
Score = 247 bits (630), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 204/650 (31%), Positives = 312/650 (48%), Gaps = 135/650 (20%)
Query: 594 AINRIAQVENDYH-EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
INR E + ++ E K A+AA+ AKS FLA +SHEIRTPMN VLGMLQ++ TEL
Sbjct: 747 GINRDITAERELELQLRESKYLADAANSAKSMFLANMSHEIRTPMNAVLGMLQLIKSTEL 806
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
Q DY A + + L++LIND+LD +KIE+G+LE E PF+ +L + + S
Sbjct: 807 STQQHDYTSKAQIAARSLLNLINDILDYSKIEAGKLELEQQPFNTEALLRELDVVLSPSL 866
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+K IEL + +P T + G+S++ Q V ++L+
Sbjct: 867 GKKNIELLFDIDSALP--------------TAVEGDSLRLQQ------VLINLS------ 900
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
S+ + T G E L ++ RI+
Sbjct: 901 ------------------SNAIKFTTEG----------EVVLQLTLLQLQDKKARIRF-- 930
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
+V DTG+GI Q RIF F QA++ST+R YGGTG+GL IS+ +VELMGGE+ SEPG
Sbjct: 931 SVRDTGIGISPSQQQRIFEGFTQAEASTTRQYGGTGLGLVISKRIVELMGGELQLQSEPG 990
Query: 893 TGSTFSFTVTF---TEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQR 949
GS F F + F TE E L ++ R L++DD + E+ + +++
Sbjct: 991 KGSCFWFDLEFNVATEVEAQRL----------ITISSDTRVLIVDDNATALEILQKTVEQ 1040
Query: 950 LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG- 1008
L +V +A S + A + + +T+ LH +L R G
Sbjct: 1041 LGASVMLARSGEEALACVEHCFATNQ--------------------TLHVVLMDYRMPGM 1080
Query: 1009 -GLEISR---------NLPKIFLLATSISETDRDE-LKSDGIVTL-----LTKPLRLSVL 1052
GLE+++ NLP + + +S RDE +K+ L LTKP+ L
Sbjct: 1081 NGLEVAQCIKAKSDASNLPVVIM----VSAFGRDEIMKAQTTEVLPYAAYLTKPVT-PQL 1135
Query: 1053 IGCFQEDPESSKKLQ-QKRKKPSLG-HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTC 1110
+G E S L+ R +P L+G ++L+V+DN NR VA L+ GA+V
Sbjct: 1136 VGALIEGSISGDILKPSARVRPEQSTSPLRGLRLLLVEDNEFNRVVASELLEHEGAVVDM 1195
Query: 1111 VDCGRAAVDKLTPPH-NFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMF 1169
G+ +D + + ++D MD+QMP +DG +AT QIR +++ AS
Sbjct: 1196 AVGGQEGIDAIIKGNTSYDLVLMDVQMPVVDGLEATRQIR-----ADKRFAS-------- 1242
Query: 1170 GNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+PI+AMTA+V + E C+K GM+ +++KPF+ +++ + F
Sbjct: 1243 -------LPIIAMTANVYTSDQEDCIKAGMNGHLAKPFDLDKVIETILLF 1285
>gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1104
Score = 247 bits (630), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 194/630 (30%), Positives = 298/630 (47%), Gaps = 122/630 (19%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A++AKSQF+A +SHEIRTPMNGV+GM +L+DT+LD Q ++A+T +S +L+
Sbjct: 445 KKDAETANIAKSQFVANMSHEIRTPMNGVIGMTGLLLDTDLDERQREFAETIQSSAANLL 504
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +KIE+ +LE E + F L L++V L + KA K +E V VP ++
Sbjct: 505 TVINDILDFSKIEADKLELESIGFDLRFTLEDVSDLLAIKAQAKNLEFVCMVDPDVPSLL 564
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GDPGR RQ+I N+ N+IKFT+ + + + + K
Sbjct: 565 VGDPGRLRQLIINICNNAIKFTR----------------------EGEVVVRVVGEEIKE 602
Query: 792 DKVY------NTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
DK Y +T G P + + F +D + T E G TG+G
Sbjct: 603 DKAYLRFTITDTGIGIPEDKQNDLFAPFTQMDASTTREYGG----------TGLG----- 647
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
LSI + LV+LM GEIG S PG G+TF F++ F +
Sbjct: 648 -------------------------LSICKRLVQLMNGEIGVSSRPGEGATFWFSLPF-Q 681
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQ----RLEMAVHVANS-M 960
+R S +P + +G + L++DD + + L+ R E A N+ +
Sbjct: 682 RQRQSREPL------ATASIQGRKILIVDDNATNRRLLSVLLETWGCRHEEAPDAQNALL 735
Query: 961 QLACSYLSDTCSTS-VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
++ + L + S ++ + + L+D G L ++K G +
Sbjct: 736 KIKKAALEEKEPYSLIITDMQMPLMD--------GEELGRLIKNDPDLAGSSL------- 780
Query: 1020 FLLATSIS-ETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG-H 1077
L+ TSI+ D L G LTKP++ SVL C Q + + K KP + H
Sbjct: 781 -LMMTSIANRGDAARLSEIGFSAYLTKPIKQSVLFDCLQTVLGADTIPRPKEPKPIITRH 839
Query: 1078 LL-----KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
+ + ++L+V+DN+VNR+VA L G V G A+ L +D M
Sbjct: 840 AIAEAKKRRYRLLLVEDNLVNRKVALSILDNLGFRTDAVSNGLEAISALE-NLPYDLVLM 898
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D QMPE+DG++AT +IR E+ + + +PI+AMTA + E
Sbjct: 899 DCQMPELDGYEATKRIRSAESRVLNR-----------------GIPIIAMTAHAMAGDRE 941
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+C+ CGMDDY+SKP E L V ++ S
Sbjct: 942 KCIACGMDDYISKPVEPAALNQLVEKWLDS 971
>gi|445499004|ref|ZP_21465859.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
gi|444788999|gb|ELX10547.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
Length = 1210
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 194/619 (31%), Positives = 293/619 (47%), Gaps = 110/619 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A +KS FLA +SHEIRTPMN ++GM + + T L Q DY Q +G+ L+
Sbjct: 458 KQTAEDATRSKSLFLANMSHEIRTPMNAIIGMSHLALKTGLTPRQHDYVQKIQRAGQHLL 517
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+IND+LD +KIE+ +L+ E PF L +L+N+ +L K N KG+EL V+ VP
Sbjct: 518 GIINDILDFSKIEADKLQVENQPFELDQLLENLATLIGDKVNAKGLELVFDVAPDVP--- 574
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
T LVG++++ G I ++ + +
Sbjct: 575 -----------TALVGDALRL----GQILIN--------------------------YAN 593
Query: 792 DKVYNTLSG-FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850
+ V T G V R + + +L L V DTG+G+ E ++F
Sbjct: 594 NAVKFTEQGEVAVTVRVRGSDEHHVL-------------LHFAVRDTGIGLSEEQMRQLF 640
Query: 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE--R 908
F QAD+ST+R YGGTG+GL+IS+ L +LMGGE+G S+PG GSTF FT G R
Sbjct: 641 QSFQQADASTTRKYGGTGLGLAISKKLAQLMGGEVGVESQPGLGSTFWFTARLQIGHSAR 700
Query: 909 NSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLS 968
SL P PD RG R LV+DD V L+ + V VA+S A +
Sbjct: 701 PSLLPS-----PD---LRGKRLLVVDDNDSARSVLAELLRGMRFDVRVASSGAEALDMVR 752
Query: 969 DTCSTSVLPQLALVLIDKDVWDKEI--GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
D L +VL+D W + G+ ++ L + + P++ ++
Sbjct: 753 DAAVGG--EPLHVVLLD---WQMPVMSGIDTAAAIR------ALAL-QEPPRMMMVTAYG 800
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVLIGCF------QEDPESSKKLQQKRKKPSLGHLLK 1080
E + + + GI +L KP+ SVL+ + D + + Q +L L+
Sbjct: 801 REEVQQQAHNAGIDDVLIKPVNASVLLNTLIRLLGGEVDDSTLARPAQVSTLAALA-TLR 859
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
G ++L+ +DN +N++VA L G +V + G AV + +D MD+QMP MD
Sbjct: 860 GARVLLAEDNELNQQVAAELLADAGLVVEIANNGAEAV-AMAQREQYDIVLMDMQMPVMD 918
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G +AT +R L L +P++AMTA+ +QA E C++ GM
Sbjct: 919 GVEATRALRALP--------------------ALDGLPVVAMTANAMQADRELCIQAGMV 958
Query: 1201 DYVSKPFEDEQLYTAVARF 1219
D+V KP E + L+ A+ R+
Sbjct: 959 DFVIKPIEPDDLWRALLRW 977
>gi|427711336|ref|YP_007059960.1| PAS domain-containing protein [Synechococcus sp. PCC 6312]
gi|427375465|gb|AFY59417.1| PAS domain S-box [Synechococcus sp. PCC 6312]
Length = 1054
Score = 246 bits (629), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 190/634 (29%), Positives = 285/634 (44%), Gaps = 117/634 (18%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS FLAT+SHEIRTPMN ++G+ +L+D EL Q ++ T SG L+SLIND+LD
Sbjct: 487 AKSDFLATMSHEIRTPMNAIIGLTGLLLDMELTEQQHEFLNTIRASGDALLSLINDILDF 546
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIESGRLE E PF L + L L + +AN++G+ELA ++ P V GD GR RQ
Sbjct: 547 SKIESGRLEIEAYPFDLRACAEEALDLLAGRANEQGLELAYHMEPNTPVAVTGDMGRLRQ 606
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
I+ NL+GN++KFT G + + + D + E + +
Sbjct: 607 ILVNLIGNALKFTA-AGEVVLYIQAHPLTPVNPDPTPEATEDTHYPIHQ----------- 654
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
P V ++ + DTG+GI + R+F PF Q D+ST
Sbjct: 655 -PYVFQF-------------------------AIRDTGIGISPQGVTRLFQPFSQVDAST 688
Query: 861 SRTYGGTGIGLSISRCLVELMGGEI-------------------GFVSEPGT-----GST 896
+R +GGTG+GL+I + L E MGG I GF P + GST
Sbjct: 689 TRYFGGTGLGLAICKRLAEAMGGTIWLESCDGSGKLAKAGQPHSGFTPSPSSQLTNRGST 748
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
F FTVT +L + Q+ ++ +G + L++DD + ++ M
Sbjct: 749 FYFTVTMPV----NLQAEEQKSAHTIASLQGRKVLIVDDNATNRQILELQTTSWHMEPQA 804
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLID---KDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
+ A + L + L ++D + E+G +H GLE
Sbjct: 805 YPDAKSALTALKAGAN------FDLAILDLHMPHMNGLELGQAIH----------GLEAH 848
Query: 1014 RNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC-------FQEDPESSK-- 1064
++LP I L +S+ + + + S + KP++ S L FQ K
Sbjct: 849 KHLPLIML--SSVGQGNA-LIASQHFAAAIAKPIKQSALFNVLLRILNEFQASQTVQKPV 905
Query: 1065 KLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
L + L L +IL+ +DN VN+ VA L++ G V G + L
Sbjct: 906 TLSPETSMADLAKHLPPLKILLAEDNKVNQMVALRILERLGYRADVVANGLEVLAALQ-R 964
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
+D MD+QMPEMDG AT +I I + S F I+AMTA
Sbjct: 965 QPYDVVLMDMQMPEMDGVTATQEI----------IRARPSQNRPF---------IIAMTA 1005
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ ++ + C+ GMDDY+SKP + +L A+ +
Sbjct: 1006 NAMEGDRDICLDAGMDDYLSKPIKIPELVRALGQ 1039
>gi|332528708|ref|ZP_08404685.1| two-component system sensor-response regulator hybrid protein
[Hylemonella gracilis ATCC 19624]
gi|332041774|gb|EGI78123.1| two-component system sensor-response regulator hybrid protein
[Hylemonella gracilis ATCC 19624]
Length = 1345
Score = 246 bits (629), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 192/616 (31%), Positives = 287/616 (46%), Gaps = 108/616 (17%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
+++ K +AE A AKS FLA +SHEIRTPMN +LG+ +L L + Q H +G
Sbjct: 600 LVKAKQKAEDATQAKSDFLANMSHEIRTPMNAILGLCYLLEQQSLSPTSREMVQKIHAAG 659
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
K L+++INDVLD +KIE+ + E VPF L DVLDN+ S+ S+ K +EL +
Sbjct: 660 KTLLTIINDVLDFSKIEAQHMVIEQVPFRLSDVLDNLASIMSASLGSKPLELVVGPPPDG 719
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
+IGD R Q++ NL N+IKFT + +V+V+
Sbjct: 720 ANYLIGDRLRLGQVLVNLASNAIKFTG---------------QGEVEVR----------- 753
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
VDR N GR+ L +V DTG+GI + Q
Sbjct: 754 ----------------VDRLPDTGN-------------GRVMLRFSVRDTGIGIAPDKQE 784
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
IF F QAD+ST+R++GGTG+GL+ISR LV LMGG + S PG GS F F + F
Sbjct: 785 MIFHAFSQADTSTTRSFGGTGLGLAISRHLVALMGGRLQVHSAPGQGSNFHFELPF---- 840
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM-----QL 962
L +PD++ LR L+ DD E TR L V +A+S+ +
Sbjct: 841 --ELSNPMDSALPDMAH---LRVLIADDH----EATRKVL------VDIAHSLGWHADAV 885
Query: 963 ACSYLSDTCSTSVLPQ-LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFL 1021
A + + +T L + L+L+D + + GLV +++ L P I +
Sbjct: 886 ATGEEAVSRATGALSEPYDLLLLDWHMPGMD-GLVAAVQIRE------LSECETAPIIVM 938
Query: 1022 LATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKG 1081
+ E + + ++ KP+ S L E +L + + L+
Sbjct: 939 VTAYERERLARQEGARATDAIICKPITSSGLYNAVLEARRHRGELDAEIVRVRSSRRLQE 998
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP-PHNFDACFMDLQMPEMD 1140
++LVVDD+ +NR VA L GA+V + G+ A+ L P+ F MD+QMP MD
Sbjct: 999 MRVLVVDDSEINRDVARNILAGEGALVATAEDGQTALAMLREQPYAFHVVLMDMQMPVMD 1058
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G+ T IR ++ L +P++A+TA ++ G+D
Sbjct: 1059 GYVTTRMIRSMD--------------------ALAALPVIALTAGAFSTQRALALEAGVD 1098
Query: 1201 DYVSKPFEDEQLYTAV 1216
D+V+KPFE +QL A+
Sbjct: 1099 DFVAKPFEVDQLVQAI 1114
>gi|168701075|ref|ZP_02733352.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
Length = 1034
Score = 246 bits (629), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 189/617 (30%), Positives = 292/617 (47%), Gaps = 100/617 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ K AEAA+ AK +FLA VSHE+RTPMN +LGM +++++TEL Q T ++
Sbjct: 381 ELLVAKEAAEAANRAKDEFLANVSHELRTPMNAILGMTELVLETELREDQRQCLATVKSA 440
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+L+ ++ND+LD AKIE+G+LE + F L V+ + L +++A++ G+EL V
Sbjct: 441 ADNLLGILNDLLDFAKIEAGKLELDPTEFSLRAVVGDTLRALAARAHRAGLELVGDVHPA 500
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD--DVRSKVDVKDKVLEKSL 784
VP+ ++GDPGR RQ++ NL+GN+IKFT G + V V AD D+ V+ V + +
Sbjct: 501 VPDALVGDPGRLRQVLFNLIGNAIKFTP-AGEVVVGVEPADPSDIGGSA-VRFTVRDTGI 558
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
K D++++ EQ EDT
Sbjct: 559 GIKPEKLDRIFHAF------------------------EQ----------EDT------- 577
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
ST+R YGGTG+GL+IS LV LMGG IG SEPG GSTF+FT F
Sbjct: 578 --------------STTRRYGGTGLGLTISGRLVALMGGAIGVESEPGRGSTFAFTARFG 623
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
R P + +P RGLR LV+DD + + L+ +M+ A A
Sbjct: 624 RCAR----PSGVELIPTPEALRGLRVLVVDDNATNRRILSATLRNWQMSPDTAGDAADAT 679
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
S L LV++D + G + + R L +R I LL +
Sbjct: 680 SALWHAAGQG--QPYPLVVLDA----RMPGTDGFSLAARIREAPALAATR----IVLLTS 729
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKR--KKPSLGHLLKGK 1082
D + I + KP++ +L+G + +S + +R +KP+ G +
Sbjct: 730 GDRPDDPARSRELRIDAHVLKPIQADLLLGVIRRVMRTSAETVPEREPEKPATGA--RAL 787
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
++LV +DN N R+ E L + G V V GR A+ + ++FD +D+ MPE++GF
Sbjct: 788 RVLVAEDNEFNARLVEELLVRRGHRVQVVADGRQALSR-AGTNDFDVLLLDVHMPELNGF 846
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+ +R A+G +P++ +TA E+C+ GMDD+
Sbjct: 847 EVVRALR----------AAGS------------QLPVIGLTARSRPEDREECLAAGMDDF 884
Query: 1203 VSKPFEDEQLYTAVARF 1219
++KP L A+ R
Sbjct: 885 LTKPVRLPDLLAAMERL 901
>gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
Length = 1322
Score = 246 bits (629), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 219/742 (29%), Positives = 333/742 (44%), Gaps = 161/742 (21%)
Query: 514 QTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLD---FGDPSRKHEMHCR-------- 562
QT +Y N A +YG D + + + ++ + DP R+ E CR
Sbjct: 489 QTSPSGIYMNVN-PALAKIYGYDSPNDLIGSIGDISKDLYVDPQRRAEF-CRLIETEGAV 546
Query: 563 -------FKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARA 615
+++ W + NA H A RI E ++ E++ RA
Sbjct: 547 KGFVSEVYRRDGSTIWISENA------------HPVKNAAGRILYYEGSVEDVTEVR-RA 593
Query: 616 E----------AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E AA+ AKSQFLA +SHEIRTP+NGV+GML +L T LD Q Y +
Sbjct: 594 EQWRAEKAEAEAANEAKSQFLAKMSHEIRTPLNGVIGMLDLLKATSLDDRQKRYVTICRS 653
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S L+ LIND+LD +KIE+GR+E V F LH +++++ +F +A KG+ELA
Sbjct: 654 SADTLLGLINDILDLSKIEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELA----- 708
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
H+A DV +++ + L + L
Sbjct: 709 -------------------------------------CHIAPDVPQRIEGDPERLRQILV 731
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
++ V N L V + ++ + G +L + V+DTG+GI
Sbjct: 732 NL------VGNALKFTSV--------GYVLIKVSMAQSPTGEHRLQIHVKDTGIGISPAQ 777
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q ++F PF QAD +TSR +GGTG+GLSI R L +LM G I S G G+TF+ + T
Sbjct: 778 QQKLFQPFTQADVTTSRRFGGTGLGLSICRQLADLMQGSIQIESAVGVGTTFTVDLPLTS 837
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
E + + P+ + GLR L++DD I E+ HL V S + A S
Sbjct: 838 AEVSKVAPEHE-------PLAGLRVLLVDDNEINLEILSEHLVAWGCRVSKCLSAETALS 890
Query: 966 YLSDTCSTSVLPQLALVLIDKDV--WDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
LS +T P ++ +IDK + +D E+ + R+ L+ R L+
Sbjct: 891 LLSKPATTG--PAFSIAIIDKQMPGFDGEM------LAGSIRKYAHLDSLR-----ILML 937
Query: 1024 TSISETDRDELKSDGIV---TLLTKPLRLSVLIGCFQE-----DPESSKKLQQKR----- 1070
TS+ D + DGI + KP+R L+ Q+ E++++L ++
Sbjct: 938 TSV---DFSDAAVDGIPPWDAWINKPVRAGRLLEMLQKLRDYVPLENARELSAQQPLSET 994
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K PS +IL+ DDN VN V ++ G G ++KL +D
Sbjct: 995 KTPS-------ARILIADDNEVNLIVTTELVRSLGFDTETAADGSIVLEKLK-SQTYDLI 1046
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD QMP +DGF+ T +IR EI +Q +GE H+PI+A+TA+ IQ
Sbjct: 1047 LMDCQMPTLDGFETTRKIR----EIEKQAQNGE------------HIPIVALTANAIQGD 1090
Query: 1191 NEQCMKCGMDDYVSKPFEDEQL 1212
N++C + GMD Y++KP + QL
Sbjct: 1091 NDRCRQAGMDGYLTKPIDHAQL 1112
>gi|376003859|ref|ZP_09781659.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
gi|375327679|emb|CCE17412.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
Length = 946
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 190/642 (29%), Positives = 297/642 (46%), Gaps = 124/642 (19%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
+ ++E + A A KS+FLA +SHEIRTPM+GVLGM+++LM T L Q DY QT +
Sbjct: 264 NNLIETRNAALNAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHLTLQQKDYTQTIYR 323
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S K L+++IN++LD +K+E+G E F L D L+ V+ L + KA K +EL I +
Sbjct: 324 SAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLAVKAEDKQLELIILLEP 383
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+P + GD R +Q++ NLV N+IKFT+ S H+ V +V +D
Sbjct: 384 NLPRYLKGDGMRLQQVLINLVNNAIKFTK-------SGHIIIRVTPRVISQD-------- 428
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
I + +EDTG+GI E
Sbjct: 429 -----------------------------------------HINIYFAIEDTGMGISDEL 447
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
Q ++F PF A S+T+R YGGTG+GLSI + LV LMGGEIG S+ GS F F TF
Sbjct: 448 QPQLFQPFSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVKSQEEEGSIFWFNATFLP 507
Query: 906 GERNSLD-PKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
E + PK E + + LV+++ S+ Q + V A++ ++A
Sbjct: 508 SELSETSAPK---------ELKNMSLLVVENSSLVRHSVSCITQPWGIQVETADTSKIAL 558
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
+ L+L+D ++ D+ +L + K S + P +L +
Sbjct: 559 DKWHHQQAKG--SPYNLILMDLELLDRHGAKLLGQLYK---------TSSDSPTQLILMS 607
Query: 1025 SISETDRDE-LKSDGIVTLLTKPLRLSVLIGCFQED-----PESSKKLQQ---------- 1068
SIS+ +R E + + G L KP+ L+ F + P L +
Sbjct: 608 SISQRNRAEQVLNLGDFVYLVKPIAPLRLLRSFAKALELDIPNLDHHLDKSWDDVLMGSS 667
Query: 1069 --KRKKPSLGHLLKGK---------QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
+ KP HL + +IL+ +D++VN+ V L++ G + V G A
Sbjct: 668 FPETPKPPCCHLSQTNDKLRASIPLKILLAEDDLVNQEVVLTQLQQLGYVADAVSDGEAV 727
Query: 1118 VDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177
+ L H +D MD QMP +DG++ T +IR +N I
Sbjct: 728 LQHLETQH-YDLILMDCQMPILDGYETTARIRGSQNSQRPPI------------------ 768
Query: 1178 PILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
I+A+TA V+ + ++C++ GMDDY++KP + + L + R+
Sbjct: 769 -IIALTASVMPSDRDRCLQVGMDDYITKPIDLQALVNVINRW 809
>gi|302121697|gb|ADK92863.1| histidine kinase 2 [Hypericum perforatum]
Length = 185
Score = 246 bits (628), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 115/153 (75%), Positives = 133/153 (86%)
Query: 532 MYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIF 591
MYG DV DT L+ +SNLDFGDPSR+HEM CRFKQK +PWTAINAS V +IT+LVGHIF
Sbjct: 1 MYGCDVIDTDLIHLSNLDFGDPSRRHEMRCRFKQKASLPWTAINASTTVFIITVLVGHIF 60
Query: 592 HAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
HAAI RI +VE D H+M+EL RA+AA+VAKS+FLATVSHEIRT MNGVLGMLQMLMDTE
Sbjct: 61 HAAIKRIVKVEADCHKMLELTVRAKAANVAKSKFLATVSHEIRTSMNGVLGMLQMLMDTE 120
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
LD +Q DYA+TAH SG++LISL+NDVLDQAKI+
Sbjct: 121 LDTSQEDYAKTAHASGRELISLMNDVLDQAKIK 153
>gi|94263691|ref|ZP_01287499.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455890|gb|EAT06049.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1211
Score = 246 bits (628), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 187/619 (30%), Positives = 291/619 (47%), Gaps = 108/619 (17%)
Query: 603 NDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ--LDYA 660
D E+ + + AEAA+ +KS+FLA +SHEIRTPMN ++G+ Q+ + ++ DY
Sbjct: 395 QDISEIKKAQEAAEAANRSKSEFLANMSHEIRTPMNAIIGLGQLALKSQPPPPPRLYDYL 454
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
+ S L++LIND+LD +KIE+G+L + VPF L ++L+ + L + +A +KG+EL
Sbjct: 455 EKITGSAATLLTLINDILDFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELL 514
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
V P ++GDP R Q++ NL N+IKFTQ +G + +S +AD + ++ V
Sbjct: 515 FAVDSGAPRQLVGDPHRLGQVLINLTSNAIKFTQ-QGEVTISFEVADPTADPLILRVAVR 573
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
+ + + ++++ + F D T
Sbjct: 574 DTGIGMSPEQIERIF---------------QPFTQADGATT------------------- 599
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
R +GGTG+GLSI+ LV+L+GGEI S PG GSTFSFT
Sbjct: 600 ---------------------RKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFT 638
Query: 901 VTFTEGE-RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
E +L P +P V + RGLR LV+DD + +V R L V A+S
Sbjct: 639 CLLGRHEPHKALCP-----LPPV-DLRGLRVLVVDDNATARQVLRQTLASFSFRVEEADS 692
Query: 960 MQLACSYLSDTCSTSVLPQLAL---VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
+ A S L+ +L + V+ + D + + ++ Q
Sbjct: 693 GRRALSLLARAAEEGQPYELVILDWVMPEFDGLECAAAIAADPLIDPQ------------ 740
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDP---ESSKKLQQK 1069
P + LL E R+E G+ LTKP+ S L + CF ++ ES + +
Sbjct: 741 PLLILLTAHGREEIREEAAGRGLRHFLTKPVLPSTLYDTIMECFGQEGISRESDRGRRSD 800
Query: 1070 RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
+ + L G ++LV +DN +N++VA L G + GR AV++ +D
Sbjct: 801 ELESAAREKLAGSRLLVAEDNALNQQVAAELLAAVGIHCDLANNGREAVEQYR-RQTYDG 859
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMPEMDG+QAT IR L +G+ VPI+AMTA +
Sbjct: 860 VLMDIQMPEMDGYQATGAIRAL--------PAGQ------------QVPIIAMTAHALAG 899
Query: 1190 SNEQCMKCGMDDYVSKPFE 1208
E+C+ GMD+++ KP E
Sbjct: 900 EREKCLAAGMDEHIPKPVE 918
>gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 1545
Score = 246 bits (628), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 202/658 (30%), Positives = 301/658 (45%), Gaps = 147/658 (22%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ E + RA AD AKS+FLA +SHEIRTPMNGVLGM ++L ++LD Q + S
Sbjct: 978 ELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSDLDPKQKTFTDIIVKS 1037
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G L+++IND+LD +KI++G+L + PF+L + +++V +L S++A +K +EL + V R
Sbjct: 1038 GNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVEPR 1097
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+ + IGD GR RQI+TNL+GN++KFT D+GH+ V V +V K+
Sbjct: 1098 LESLFIGDVGRIRQIVTNLLGNAVKFT-DEGHVLVDV-----TGERVPTGTKL------- 1144
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ V +T G P +E F +D ++T
Sbjct: 1145 ----TISVTDTGIGIPEEKLKLVFEKFSQVDTSST------------------------- 1175
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE- 905
R + GTG+GL+I+ LVELMGG+IG S G GSTF F+VT
Sbjct: 1176 ---------------RRHEGTGLGLAITSRLVELMGGDIGVESAEGKGSTFWFSVTLPRA 1220
Query: 906 GERNSLDPKWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
G++N Q+ +P DV+ G R L++DD AV+ A +
Sbjct: 1221 GQQNG-----QRIMPIDVT---GARVLIVDDN----------------AVNRAILTEQMT 1256
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIG-LVLHYMLKQQRRKGGLEISRNLPKI---- 1019
S+ D+C+ + VLI + + +VL Y + + I RN +
Sbjct: 1257 SWTFDSCAAESGAEGLKVLIAAAAYGVPVDCVVLDYQMPEMSGAEMARIVRNTAGLAGTP 1316
Query: 1020 FLLATSISETDRDELKSD-GIVTLLTKPLRLSV----LIGCFQE---------------- 1058
++ TS+ ++ + D GI L KP R SV L+ Q
Sbjct: 1317 IIMLTSVDQSLANTSYRDLGIDAQLIKPARSSVLLETLVATIQRHRHNTGGSDAQPLAAD 1376
Query: 1059 -------DPESSKKLQQK--------RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKK 1103
P+ S +Q+ R +P + ILV +DN VN+ V L +
Sbjct: 1377 VAASNVTRPQPSAPSEQRALLQPPSIRPRPPVAAGGDRLDILVAEDNEVNQMVFTQILGE 1436
Query: 1104 HGAIVTCVDCGRAAVDKLTPPHNFDAC--FMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161
G V GR A+D + C MD+ MPEM+G +AT IR LE E
Sbjct: 1437 TGYGFEIVGNGRKALDAF---GRLNPCMILMDVSMPEMNGLEATAAIRRLEEETGT---- 1489
Query: 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
HVPI+ +TA ++ E+C++ GMDDY+ KP L V R+
Sbjct: 1490 --------------HVPIVGVTAHALKGDRERCLEAGMDDYLPKPISPRALLEKVERW 1533
>gi|261250376|ref|ZP_05942951.1| sensory box histidine kinase/response regulator [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417953729|ref|ZP_12596772.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938945|gb|EEX94932.1| sensory box histidine kinase/response regulator [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342816845|gb|EGU51738.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 1199
Score = 246 bits (628), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 189/635 (29%), Positives = 309/635 (48%), Gaps = 104/635 (16%)
Query: 592 HAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
HAA+ R A+ ++ + A +A+ AKS FLA +SHEIRTPMN ++GM + + T+
Sbjct: 457 HAALERFAE------KLAVARDEANSANTAKSDFLANMSHEIRTPMNAIIGMSYLALKTD 510
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
L AQ +Y S L+ LIND+LD +KIE+G+L+ E V FHL +VLDN+ +L +
Sbjct: 511 LTKAQRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIENVDFHLENVLDNITNLVGLR 570
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
A+++G+EL I++ VP ++GDP R Q++ NL N++KFT +KG I +SV +A
Sbjct: 571 ASERGLELLIHIERDVPTTLVGDPLRLGQVLINLANNAVKFT-EKGEIKISVRVAKRQGD 629
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
V+++ V + + + ++DK++ S F D
Sbjct: 630 DVELEFSVEDSGIGMTKEQTDKLF---SKFTQAD-------------------------- 660
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
SST+R YGGTG+GL+IS+ L +LMGG+I SE
Sbjct: 661 --------------------------SSTTRKYGGTGLGLAISKELSQLMGGDIRVESEF 694
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G GS FSF++ Q V E L+ L++DD + + L L+
Sbjct: 695 GQGSRFSFSIATKVSH-----ALKQDNVSMPVELGKLKVLIVDDNASARIIVEDILHSLQ 749
Query: 952 MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
+++ A + L +T S P L++ D + K+ G+ L + Q+ +
Sbjct: 750 FEAQSVSNVDDALNAL-ETASQQQSP-YDLLISDWQMPGKD-GIDLVESVYQRFTEN--- 803
Query: 1012 ISRNLPKIFLLATSISETDRDELKSDGIVT--LLTKPLRLS----VLIGCFQ-EDPESSK 1064
+ PKI +L E D G+ T +L KP+ S +I + + S+
Sbjct: 804 ---HQPKILMLTAYGREDLNDAFTHRGLTTPSILDKPVTASHLFDAVIALYGVANTRISR 860
Query: 1065 KLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP 1124
Q++ + + L G +L+V+DN +N+ +A L+ VT G+ AVD
Sbjct: 861 SEAQEQHQLANVQQLAGAHLLLVEDNAINQELAVELLQGQQIKVTIAVNGQEAVD-YYKQ 919
Query: 1125 HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
H+FD MD QMP MDG++AT IR +++Q+ +PI+AMTA
Sbjct: 920 HDFDGILMDCQMPIMDGYEATQFIRQT---LDDQM-----------------MPIIAMTA 959
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+V++ + GM+D ++KP + +++ +A++
Sbjct: 960 NVMERDKVKAQNAGMNDIIAKPIDVGSMFSTLAKW 994
>gi|119716209|ref|YP_923174.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
gi|119536870|gb|ABL81487.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
Length = 1072
Score = 246 bits (628), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 198/621 (31%), Positives = 297/621 (47%), Gaps = 104/621 (16%)
Query: 595 INRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA 654
+ R+A+ E E+ + + A AA KS+FLAT+SHEIRTP+NGV+G+ +L+ T LD
Sbjct: 393 LGRVAERERAQRELADARDVAMAASRQKSEFLATMSHEIRTPLNGVIGLNDLLLRTPLDP 452
Query: 655 AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQ 714
QL A + + L+ +IND+LD +KIE+G+LE E + F + V D V SL A
Sbjct: 453 DQLRLASGVQVASRALLGVINDILDFSKIEAGKLELERLDFEVRGVFDQVASLLGEAARA 512
Query: 715 KGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVD 774
KG+EL + VPEV+ GDP R Q+ITNL N++KFT+ +G +F+ + +
Sbjct: 513 KGLELIVSCHSEVPEVLRGDPTRLAQVITNLGSNAVKFTE-EGEVFIRATASPGPAGRTR 571
Query: 775 VKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
+ H S V +T G P D + +E F
Sbjct: 572 L-------------HVS--VTDTGVGVPANDVGELFEAF--------------------- 595
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+QAD+ST+R +GGTG+GL+ISR +V+ +GGEIG PG G
Sbjct: 596 -------------------IQADASTTRRFGGTGLGLAISREIVQALGGEIGMEPNPGGG 636
Query: 895 STFSFTVTFTE--GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM 952
S F FT G R D ++ + S G R LV+DD + L
Sbjct: 637 SVFWFTADLESPGGPRVDADDEYAR-----SWLSGRRVLVVDDNQHNRLILEEQLGWWR- 690
Query: 953 AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
+ VA + + + + + VL+D + ++ GL L L+ E
Sbjct: 691 -IRVAAASSADEAEQAVAAAHAAGDPFEAVLLDLSMPGRD-GLDLARSLRA-------EP 741
Query: 1013 SRNLPKIFLLATSISETDRDELKSDGIVTLLTKP-----LRLSVLIGCFQEDPESSKKLQ 1067
S +L ++ +LA+ + + D L++ GIV LTKP +R ++L +P +L
Sbjct: 742 SYDL-RVIMLASGSTPSAWD-LRTAGIVACLTKPVLGAEVRAALLRHLAGVEPRPEPELP 799
Query: 1068 QKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
P ++LVV+DN VN+ VA G L+ G + G AA+ L H F
Sbjct: 800 VVGPDPG-----PRARVLVVEDNEVNQLVAVGLLEALGYRARVAEDGAAALTALAEEH-F 853
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD+QMP MDG+ AT IR +GES G +P++AMTA +
Sbjct: 854 DLVLMDVQMPRMDGYAATRAIR-----------AGESD-------GRSRLPVVAMTAAAV 895
Query: 1188 QASNEQCMKCGMDDYVSKPFE 1208
+ E+C+ GMDD+++KP +
Sbjct: 896 EGERERCVAAGMDDFLTKPVD 916
>gi|90412091|ref|ZP_01220098.1| putative sensor histidine kinase/response regulator [Photobacterium
profundum 3TCK]
gi|90327069|gb|EAS43448.1| putative sensor histidine kinase/response regulator [Photobacterium
profundum 3TCK]
Length = 897
Score = 246 bits (627), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 187/622 (30%), Positives = 291/622 (46%), Gaps = 104/622 (16%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + ++ T L ++Q
Sbjct: 236 LEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTRLSSSQH 295
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY T S +L+++IND+LD +K+E+G+L E +PF + LD V+ L + A++KG+
Sbjct: 296 DYLLTIEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGL 355
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + V R+P +IGDP R +Q++TNL+GN++KFT+ +G+I VSV L
Sbjct: 356 ELTLKVDHRIPAGLIGDPLRIQQVVTNLIGNAVKFTE-RGNIDVSVEL------------ 402
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
K+ K N F V D T
Sbjct: 403 ------------KASKDENIELQFTVRD-------------------------------T 419
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S SR YGGTG+GL I++ LV MGGEI S GSTF
Sbjct: 420 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTF 479
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F++ + + P D + G + L+I+ A V + L R M V
Sbjct: 480 WFSLKMLKTDLPVSQPI------DTTSLVGQKVLLIEPNMQAASVVQQRLIRAGMFVTYR 533
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
++M + AL+ + I ++L + K ++ + +S LP
Sbjct: 534 STMPEEVEH----------HHFALICLPPG-QQPPIAILLDRVFKAEQVTDKVIVS--LP 580
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH 1077
T ++ ++R L + G+ L KPL L +P+ + + P
Sbjct: 581 -----TTELALSER--LINAGVSACLGKPLSHRKLFEVLNNEPDDILE-PELLSLPEPAQ 632
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
++ ++ VDDN N ++ L + V GR AV+ FD FMD+QMP
Sbjct: 633 KIEPLTVMAVDDNPANLKLISALLSERVETVITATGGRKAVE-YAHQKAFDLIFMDIQMP 691
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EMDG A I + E+N P++A+TA + E+ +
Sbjct: 692 EMDGVTACEAIH--KTELNHS------------------TPVIAVTAHAMPGERERLINA 731
Query: 1198 GMDDYVSKPFEDEQLYTAVARF 1219
GMDDY++KP E+ L +A++
Sbjct: 732 GMDDYLTKPIEEHILQQILAKW 753
>gi|421781680|ref|ZP_16218145.1| response regulator [Serratia plymuthica A30]
gi|407756246|gb|EKF66364.1| response regulator [Serratia plymuthica A30]
Length = 908
Score = 246 bits (627), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 188/660 (28%), Positives = 301/660 (45%), Gaps = 139/660 (21%)
Query: 589 HIFHAAINRIAQVENDYHEMME--------------------------LKARAEAADVAK 622
H+ IN +A YHE M+ K RA+ A K
Sbjct: 233 HMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 292
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S+FLA +SHE+RTP+NGV+G + ++ TE+ Q DY QT S +L+++INDVLD +K
Sbjct: 293 SEFLANMSHELRTPLNGVIGFTRQMLKTEMSVTQTDYLQTIERSANNLLTIINDVLDFSK 352
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
+E+G+L E +PF L + LD V+ L + A++KG+EL + V + VPE VIGD R +QII
Sbjct: 353 LEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDSLRLQQII 412
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
TNL+GN+IKFT+ G+I D+R + L +Q +
Sbjct: 413 TNLLGNAIKFTE-TGNI--------DIRVE-----------LRGLQER------------ 440
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
+++L V + DTG+GI Q ++F F QAD+S SR
Sbjct: 441 ------------------------QVELEVQIHDTGIGISERQQSQLFQAFRQADASISR 476
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922
+GGTG+GL I++ LV+ MGG+I F S+ GSTF F +T L P +
Sbjct: 477 RHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITL------ELHEGMLSLPPSL 530
Query: 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALV 982
+ RG I+ + AE T N + ++ + + + LP+
Sbjct: 531 PDLRGKTLGYIEANPMAAEAT-------------LNMLSATPLVITHSPTLAQLPK---- 573
Query: 983 LIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI-SETDRDELKSDGIVT 1041
KD +G+ + + + +G L + + +LA S+ + ++LK G +
Sbjct: 574 ---KDYDFLLVGVPIPFRDNLAQHEGKLMAALKIADRVILALPCQSQINAEQLKQQGAIG 630
Query: 1042 LLTKPLRLSVLIGCFQ-EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGA 1100
L KP+ + L + E P+ + ++ P ++ VDDN N ++
Sbjct: 631 CLIKPITGNRLFPLLRMETPQRLIAAPEPKRLP--------LTVMAVDDNPANLKLIGTL 682
Query: 1101 LKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160
L + + G A+ L + D MD+QMP +DG + + IR L + +
Sbjct: 683 LAEQVEKTLLCESGEEAL-ALARDNVLDLILMDIQMPNIDGIRTSELIRQLPHHNS---- 737
Query: 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
PI+A+TA + E ++ GMDDY++KP ++ L +AR++
Sbjct: 738 ----------------TPIVAVTAHAVSGEREHLLQAGMDDYLAKPIDEAMLTRVLARYY 781
>gi|290511110|ref|ZP_06550479.1| two-component system, NarL family, sensor histidine kinase BarA
[Klebsiella sp. 1_1_55]
gi|289776103|gb|EFD84102.1| two-component system, NarL family, sensor histidine kinase BarA
[Klebsiella sp. 1_1_55]
Length = 916
Score = 246 bits (627), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 189/628 (30%), Positives = 299/628 (47%), Gaps = 119/628 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +QI+TNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTE-HGNIDVLVEQRAISNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++++T G P D+ +
Sbjct: 447 --------------IQIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAV 954
F ++ L+P +PD+ GL R ++ + A+ T LEM
Sbjct: 513 WFHISL------DLNPNA---IPDMLNTDGLTGKRLAYVEANATAAQCT------LEMLA 557
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ L Y S T S+ Q ++L+ V +++ ++K +S
Sbjct: 558 ----ATPLEVIY-SPTFSSLAEAQYDILLVGIPVSMRDLSPHREKLVK------ACAMSD 606
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF---QEDPESSKKLQQKRK 1071
N + L ++ + LK DG+ L KPL + L+ P S+ Q
Sbjct: 607 N---VLLALPCHAQVSAEALKRDGVAACLLKPLTTTRLLPALVATNHAPASAPLTQTDSH 663
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
K + ++ VDDN N ++ L V D G+ AVD+ D
Sbjct: 664 KLPM-------TVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDQ-AKRLQMDLIL 715
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP+MDG +A I HL + P++A+TA ++
Sbjct: 716 MDIQMPDMDGIRACELIHHLSHH--------------------QQTPVIAVTAHALEGQR 755
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L+ + R+
Sbjct: 756 EKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|398943889|ref|ZP_10670890.1| PAS domain S-box [Pseudomonas sp. GM41(2012)]
gi|398158592|gb|EJM46932.1| PAS domain S-box [Pseudomonas sp. GM41(2012)]
Length = 1516
Score = 246 bits (627), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 200/629 (31%), Positives = 306/629 (48%), Gaps = 105/629 (16%)
Query: 594 AINR--IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
INR +Q E + H ++ K +A+ A AKS FLA +SHEIRTPMN VLGMLQ++ +T+
Sbjct: 758 GINRDITSQRELESH-LLYAKEQADTASAAKSSFLANMSHEIRTPMNAVLGMLQLVQNTD 816
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
L+ QLDY A + K L+ L+ND+LD +KIE+G+L+ + PF L ++ ++ + +
Sbjct: 817 LNDRQLDYVTKAQTAAKSLLGLLNDILDYSKIEAGKLQLDVHPFELEPLMRDLAVVLAGN 876
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
QK +E+ + +P +L+G+S++ Q V ++LA
Sbjct: 877 QGQKEVEVMFDLDANLP--------------NDLIGDSLRLQQ------VLINLA----- 911
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
+ + T+ G VV S E +N+ + L
Sbjct: 912 -------------------GNALKFTMEGQIVV----SVEQLMRTENS--------VSLR 940
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
+ V DTG+GI E IF F QA++ST+R +GGTG+GL I + LV LMGGE+ S+
Sbjct: 941 IAVSDTGIGISPEQLQCIFEGFTQAEASTTRRFGGTGLGLVICKRLVSLMGGELQVESQQ 1000
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G GS F F +T L P DVS +R LV DD ++ E+ + L
Sbjct: 1001 GVGSRFWFDITLDVAPNARLRPDSPGV--DVS----IRILVADDNAMAGELLLRTVHALG 1054
Query: 952 -MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL 1010
A HV+ Q A ++ + + +VL+D + D + GL +++QQ G+
Sbjct: 1055 WKADHVSGGTQ-AVEWVKNAQARG--EAYDVVLMDWRMSDMD-GLSAAQLIRQQ--GNGV 1108
Query: 1011 EISRNLPKIFLLATSISE---TDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQ 1067
P + ++ T+ D +E+ V LTKP+ L Q + K L
Sbjct: 1109 P-----PPMVIMITAYGREVLADANEMGDAPFVGFLTKPVTPKQLADAVQR-ALNGKDLA 1162
Query: 1068 QK---RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK-LTP 1123
Q R L G ++LVV+DNM+NR+VA+ L GA VT + G V + +T
Sbjct: 1163 QSLPPRSTVDRPQRLAGLRLLVVEDNMLNRQVADELLTGEGAQVTLAEGGLEGVSRVMTE 1222
Query: 1124 PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT 1183
+FDA MD+QMP++DG +AT +IR N + A+ +PI+AMT
Sbjct: 1223 NVSFDAVLMDIQMPDIDGLEATRRIRS-----NPRFAT---------------LPIVAMT 1262
Query: 1184 ADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
A+ E C+ GM+++V KP + EQL
Sbjct: 1263 ANASNTDREACLAAGMNEHVGKPIDLEQL 1291
>gi|206578572|ref|YP_002236863.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae 342]
gi|206567630|gb|ACI09406.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae 342]
Length = 916
Score = 245 bits (626), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 189/628 (30%), Positives = 299/628 (47%), Gaps = 119/628 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +QI+TNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTE-HGNIDVLVEQRAISNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++++T G P D+ +
Sbjct: 447 --------------IQIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAV 954
F ++ L+P +PD+ GL R ++ + A+ T LEM
Sbjct: 513 WFHISL------DLNPNA---IPDMLNTDGLTGKRLAYVEANATAAQCT------LEMLA 557
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ L Y S T S+ Q ++L+ V +++ ++K +S
Sbjct: 558 ----ATPLEVIY-SPTFSSLAEAQYDILLVGIPVSMRDLSPHREKLVK------ACAMSD 606
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF---QEDPESSKKLQQKRK 1071
N + L ++ + LK DG+ L KPL + L+ P S+ Q
Sbjct: 607 N---VLLALPCHAQVSAEALKRDGVAACLLKPLTTTRLLPALVATNHAPASAPLTQTDSH 663
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
K + ++ VDDN N ++ L V D G+ AVD+ D
Sbjct: 664 KLPM-------TVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDQ-AKRLQMDLIL 715
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP+MDG +A I HL + P++A+TA ++
Sbjct: 716 MDIQMPDMDGIRACELIHHLSHH--------------------QQTPVIAVTAHALEGQR 755
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L+ + R+
Sbjct: 756 EKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|359788763|ref|ZP_09291732.1| ATPase domain-containing protein [Mesorhizobium alhagi CCNWXJ12-2]
gi|359255408|gb|EHK58323.1| ATPase domain-containing protein [Mesorhizobium alhagi CCNWXJ12-2]
Length = 778
Score = 245 bits (626), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 201/638 (31%), Positives = 295/638 (46%), Gaps = 141/638 (22%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L TEL Q + + SG LI++
Sbjct: 226 KAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTELTPRQKTFTEVIVKSGNALITI 285
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IND+LD +KI +G+L + PF L + +++V +L S++ +K +EL + V R+P +IG
Sbjct: 286 INDILDFSKINAGQLTLDPAPFRLAEAVEDVATLMSARVAEKNLELIVRVDPRLPSDLIG 345
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
D GR RQI+TN+VGN++KFT+ KGH+ +DV +V+++ +VQ K +
Sbjct: 346 DVGRLRQIVTNMVGNAVKFTE-KGHVL------------IDVSGEVVDE---TVQLKV-R 388
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
V +T G P +E F +D ++T
Sbjct: 389 VEDTGIGIPADKLQTVFEKFAQVDGSST-------------------------------- 416
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF---TEGERNS 910
R + GTG+GL+I+ LV+LMGG IG SE G GS F F V G +N
Sbjct: 417 --------RRHEGTGLGLAIAARLVDLMGGTIGIESEVGRGSVFWFAVPLPVHAAGAKNE 468
Query: 911 LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDT 970
+ P DV+ G R LVIDD + E+ L+ A S + ++L D
Sbjct: 469 IVPV------DVT---GARVLVIDDNPVNREILLEQLRSWGFDCAAAESGAVGLAFL-DR 518
Query: 971 CSTSVLPQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
S QL +D + D ++ G+ + K L ++P + L TS+
Sbjct: 519 AS-----QLG-AAVDCVILDYQMPGMSGADVAKAISSDARLS---SIPVVLL--TSVDHI 567
Query: 1030 DRDELKSD-GIVTLLTKPLRLSVLIGC----------------FQEDPESSKKLQQK--- 1069
D L + GI LTKP R ++L+G F +P ++LQ
Sbjct: 568 DFGRLVVEYGIAAHLTKPARSAMLLGTVIAVIQRARTNVGKAHFVREP--VQQLQNAVAS 625
Query: 1070 -----RKKPSLGHLLKGK-------QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAA 1117
R P+ G ILV +DN VN+ V L G GR A
Sbjct: 626 AFTTLRGGPAAGSERDAAPAGNAPLDILVAEDNEVNQMVFGQILSGLGLSYRIAANGRTA 685
Query: 1118 VD---KLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL 1174
V+ L P MD+ MPEM+G++A IR E
Sbjct: 686 VEMYRSLQP----KLILMDVSMPEMNGYEAAHAIREFEKSTGA----------------- 724
Query: 1175 WHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
H+PI+ +TA ++ E+C++ GMDDY+ KP ++L
Sbjct: 725 -HIPIIGVTAHALKGDREKCLEAGMDDYIPKPVSPDRL 761
>gi|86145892|ref|ZP_01064220.1| hybrid sensory kinase [Vibrio sp. MED222]
gi|85836347|gb|EAQ54477.1| hybrid sensory kinase [Vibrio sp. MED222]
Length = 1223
Score = 245 bits (626), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 210/657 (31%), Positives = 325/657 (49%), Gaps = 125/657 (19%)
Query: 582 VITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVL 641
VI LL+G + + A + +E H + + A+AA+ AKS FLA +SHEIRTPMN ++
Sbjct: 443 VIILLMGLLANKAH---SALETFTHSLAAARDEADAANHAKSDFLANMSHEIRTPMNAII 499
Query: 642 GMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVL 701
GM + + T+L AQ +Y S L+ LIND+LD +KIE+G+L+ E V F L +VL
Sbjct: 500 GMSYLALKTDLTKAQRNYIHKVKLSSDTLLGLINDILDFSKIEAGKLDIEKVDFQLENVL 559
Query: 702 DNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFV 761
DN+ +L +A+ +G+EL I V VP TNL+G+ ++ G I +
Sbjct: 560 DNITNLVGLRASDRGLELLIQVDRDVP--------------TNLIGDPLRL----GQILI 601
Query: 762 SVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNT 821
++ S N+V+ ++K +S V +R
Sbjct: 602 NL-------------------SNNAVKF-TEKGEVKIS-ISVAER--------------- 625
Query: 822 MEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELM 881
Q IKL V D+G+G+ E ++FT F QADSST+R YGGTG+GL+IS+ L +LM
Sbjct: 626 --QGDDIKLNFAVSDSGIGMKQEQASKLFTKFTQADSSTTRKYGGTGLGLAISKELSQLM 683
Query: 882 GGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQY---VPDVSEFRGLRALVIDDKSI 938
GG+I +E G GSTFSFT+ + QQ+ VP + L+ LV+DD S
Sbjct: 684 GGDIHVSTELGKGSTFSFTIA------TRVSHSIQQHRVVVP--ASINNLKVLVVDDNSS 735
Query: 939 RAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD--KEIGLV 996
+ L+ L++ +++S+ A L T P LV+ D W K G+
Sbjct: 736 ARLIVGDILESLKLTPTLSSSVDEALIELH-TADAQNKP-FDLVISD---WKMPKRDGVD 790
Query: 997 LHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL------KSDGIVTLLTKPLRLS 1050
L L K G +++ +PKI +L + DR+EL + + ++L KP+ S
Sbjct: 791 LLAEL-----KNGQQLT--MPKIMML----TAYDREELAELIEQRGFEVPSILDKPITSS 839
Query: 1051 ------VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKH 1104
V + D S +L+Q+ + ++ L G IL+V+DN +N+ +A L+
Sbjct: 840 HLYDSIVSLYGLDSDRVSRSELEQQNQLANVQQ-LAGANILLVEDNEINQELATELLEGQ 898
Query: 1105 GAIVTCVDCGRAAVD----KLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160
VT + G+ A+D +T FD MD QMP MDG++AT IR N+I +
Sbjct: 899 QIKVTIAENGQQAIDLYQQAITDDVPFDGILMDCQMPVMDGYEATLHIR---NKIKD--- 952
Query: 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
PI+AMTA+V++ E+ + CGM D ++KP + ++ +A
Sbjct: 953 --------------TQTPIIAMTANVMERDKEKALNCGMTDIIAKPIDVGSMFATLA 995
>gi|428225220|ref|YP_007109317.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427985121|gb|AFY66265.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 2144
Score = 245 bits (626), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 201/652 (30%), Positives = 297/652 (45%), Gaps = 106/652 (16%)
Query: 573 AINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHE 632
A+ A +G I L H+ A+ + ++ + K A+AA+ +KS FLA +SHE
Sbjct: 1441 AVAAQMG---IALAQAHLLEQAVEQREELVAKNAALETAKREADAANRSKSDFLAMMSHE 1497
Query: 633 IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEF 692
IRTPMN V+GM +L DTEL Q+D+ +T +SG+ L++LIND+LD +KIESG+L E
Sbjct: 1498 IRTPMNAVIGMASLLFDTELSPQQMDFVETIRSSGEVLLTLINDILDFSKIESGKLHLEE 1557
Query: 693 VPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKF 752
F+L +++ L L +++A +KG+EL + + G P
Sbjct: 1558 QRFNLRRCVEDALDLIATQATKKGLELICW-------IASGTP----------------- 1593
Query: 753 TQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812
+H DV V +L ++ Q + +V ++ P +
Sbjct: 1594 ----------LHFQGDVTRLRQVLVNLLSNAIKFTQ--AGEVMVSVESQPCSNG------ 1635
Query: 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
G KL V DTG+GI + +F PF Q DSS +R YGGTG+GLS
Sbjct: 1636 -------------GCYKLHFAVHDTGIGIHPDQLRHLFQPFSQVDSSMTRRYGGTGLGLS 1682
Query: 873 ISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALV 932
IS+ L E+MGG + SE G GSTF FTV + W +P + +G R LV
Sbjct: 1683 ISKRLCEMMGGRVWVESEVGVGSTFHFTVRLQSISEPMSEDVWSNVLP---KMKGKRVLV 1739
Query: 933 IDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE 992
DD E +Q EM V A S A ++L L Q LV++D +
Sbjct: 1740 ADDNQTTRETIARQIQEWEMQVQTAASGAEAIAHLHQ------LSQYDLVILDHQMPSGN 1793
Query: 993 IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLS-- 1050
G + ++Q L + LP I +++T I + + G+ LL KPL+ S
Sbjct: 1794 -GFDIAAQIRQ------LPGGQGLP-IVVMSTGIESPSPEAIADIGVTALLAKPLKQSQF 1845
Query: 1051 --VLIGCFQED----PESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKH 1104
VL F P+ S +L + L IL+V+D VN+++ L++
Sbjct: 1846 YDVLAQIFLTGQVMLPQRSARLMSGDRLSEQYPL----HILLVEDVPVNQKLVLQMLQRL 1901
Query: 1105 GAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGES 1164
G + G A+ L +D MD+QMPEMDG +AT IR + +
Sbjct: 1902 GYRADVANNGHEAIAALR-RQPYDVVLMDVQMPEMDGLEATRWIRRQDPTL--------- 1951
Query: 1165 SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
L I+AMTA +Q E C+ GM+DY+SKP E L A+
Sbjct: 1952 ---------LKDPYIIAMTAHAMQGDRELCLDAGMNDYLSKPIRLEGLVKAL 1994
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
+KGK++LV DDN R +++ V G A+ L +D +D QMP
Sbjct: 1732 MKGKRVLVADDNQTTRETIARQIQEWEMQVQTAASGAEAIAHLHQLSQYDLVILDHQMPS 1791
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
+GF QIR L G GL PI+ M+ + S E G
Sbjct: 1792 GNGFDIAAQIRQLP-----------------GGQGL---PIVVMSTGIESPSPEAIADIG 1831
Query: 1199 MDDYVSKPFEDEQLYTAVARFFMSG 1223
+ ++KP + Q Y +A+ F++G
Sbjct: 1832 VTALLAKPLKQSQFYDVLAQIFLTG 1856
>gi|407778591|ref|ZP_11125854.1| PAS sensor protein [Nitratireductor pacificus pht-3B]
gi|407299668|gb|EKF18797.1| PAS sensor protein [Nitratireductor pacificus pht-3B]
Length = 970
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 205/658 (31%), Positives = 307/658 (46%), Gaps = 147/658 (22%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
I +++ E+ + A AD AKS+FLA +SHEIRTPMNGVLGM ++L TEL A Q
Sbjct: 402 ITELKERERELRAARETAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLTKTELTAKQK 461
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
+A SG L+++IND+LD +KI++G + + PFHL + +++V +L SS+A +K +
Sbjct: 462 TFADIILKSGNALLTIINDILDFSKIDAGHIVLDEAPFHLAEAIEDVATLMSSRAKEKDL 521
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + V + V+GD GR RQI+TNLVGN++KFT+ KGH+ V+V A
Sbjct: 522 ELIVRVDPGIAHAVVGDAGRIRQILTNLVGNAVKFTE-KGHVLVNVGGAG---------- 570
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+E ++Q V +T G P + ++ F +D ++T
Sbjct: 571 --IEDGRQTLQF---SVTDTGIGIPKGKLDQVFDKFSQVDASST---------------- 609
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
R + GTG+GL+I+ LVELMGG IG S G GSTF
Sbjct: 610 ------------------------RRHEGTGLGLAITSRLVELMGGRIGVDSVEGRGSTF 645
Query: 898 SFTVTFTEGERNSLDPKWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
FT TF E P+ Q P DVS G R LV+DD + R+ ++ +
Sbjct: 646 WFTATFPVAEA----PERQPIAPRDVS---GARVLVVDDNAT---------NRMILSEQM 689
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVL---------IDKDVWDKEIGLVLHY-MLKQQRR 1006
A+ + D C+ +P+ VL +D V D ++ ++ M++ +R
Sbjct: 690 AH-------WGFDACAARDVPEGLKVLRAAADLNLPVDCLVVDYQMPIMNGIDMVQAMQR 742
Query: 1007 KGGLEISRNLPKIFLLATSISETDRD-ELKSDGIVTLLTKPLR----LSVLIGCFQ---- 1057
+ L +P + L TS+ ++ +S I L KP R L ++ Q
Sbjct: 743 QPALA---GIPVVLL--TSVDQSLASLGARSPAIAAQLIKPTRSAALLEAIVAAIQGHRA 797
Query: 1058 ---------EDPESSKKLQQK-------RKKPSLGHLLKGKQILVVDDNMVNRRVAEGAL 1101
E PE Q++ R P G ILV +DN VN+ V L
Sbjct: 798 DDEADAEASEPPEVRSAEQEQSQAHEADRGDPEAAE--GGIDILVAEDNEVNQLVFRQIL 855
Query: 1102 KKHGAIVTCVDCGR---AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ 1158
+ G VD GR AA +L P MD+ MPEM+G +AT +IR E+
Sbjct: 856 AETGLRFEIVDNGRRAVAAYSRLQPAM----ILMDVSMPEMNGLEATKEIRRAED----- 906
Query: 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
G++ VP++ +TA ++ E+C++ GMDDY+SKP L +
Sbjct: 907 ---GQAR----------RVPVIGVTAHALKGDRERCLEAGMDDYLSKPISPRALLDKI 951
>gi|156932728|ref|YP_001436644.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ATCC
BAA-894]
gi|156530982|gb|ABU75808.1| hypothetical protein ESA_00517 [Cronobacter sakazakii ATCC BAA-894]
Length = 919
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 199/630 (31%), Positives = 295/630 (46%), Gaps = 122/630 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+S+INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL I V VP+ VIGDP R +Q+ITNLVGN+IKFT D G+I D
Sbjct: 389 ELTISVRHDVPDNVIGDPLRLQQVITNLVGNAIKFT-DHGNI-----------------D 430
Query: 778 KVLEK---SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
V+EK S N VQ + ++ +T G P D+ +
Sbjct: 431 IVVEKRAISNNKVQIEV-QIRDTGIGIPERDQSR-------------------------- 463
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P G
Sbjct: 464 --------------LFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRG 509
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
STF F ++ +D ++ D+ G+R ++ A+ TR L
Sbjct: 510 STFWFHISLDLNPNALVD----RHATDM--LAGMRLAYVEKNEAAAKSTRDLL------- 556
Query: 955 HVANSMQLACSYLSDTCSTSVLPQ--LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
AN+ L Y D S LPQ ++L V D+E R L
Sbjct: 557 --ANT-PLTVVYSPDLAS---LPQAHYDILLYAAPVTDRE---------PLSMRHDQLAS 601
Query: 1013 SRNLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+ L +LA ++ + + LK +G L KP+ + L+ E +L R+
Sbjct: 602 AATLTDCLILALPCHAQINAEMLKKEGASACLLKPVTATRLMPLLLE----HCRLIHARE 657
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK--LTPPHNFDA 1129
P ++ VDDN N ++ L+ V + G AV++ L P FD
Sbjct: 658 LPEGDQSRMPMTVMAVDDNPANLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDI 714
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMP+MDG A IR L + H PI+A+TA +
Sbjct: 715 ILMDIQMPDMDGIHACELIRKLPQQ--------------------QHTPIIAVTAHAMSG 754
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L + R+
Sbjct: 755 QKEKLLSAGMNDYLAKPIEEEKLRAMLLRY 784
>gi|119944301|ref|YP_941981.1| hybrid sensory histidine kinase BarA [Psychromonas ingrahamii 37]
gi|119862905|gb|ABM02382.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
Length = 926
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 176/611 (28%), Positives = 294/611 (48%), Gaps = 102/611 (16%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
Q+E E+ K +A+ A + KS+FLA +SHE+RTP+NGV+G + L+ T+L Q+DY
Sbjct: 269 QMEVQNIELDITKKKAQQAALVKSEFLANMSHELRTPLNGVIGFARQLLKTQLTTNQIDY 328
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
QT S +L+ +IND+LD +K+E+G+ E +PF L D +D + L + A++K +EL
Sbjct: 329 LQTIERSAGNLLKIINDILDFSKLEAGKFTLEHIPFDLRDCIDETMHLLAPSAHEKNLEL 388
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
++ V VP V GD R +QI+TNL+GN+IKFT +KG I + +
Sbjct: 389 SLIVDPEVPYEVFGDAMRLQQILTNLIGNAIKFT-EKGDIKIQIQ--------------- 432
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
++ ++++ DN ++ L + + D+G+
Sbjct: 433 ------RIEEQTNR-----------------------DN--------KVTLKIMISDSGI 455
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
GI + Q ++F F QAD+S +R YGGTG+GL I++ LV+ M G I +S P GSTF F
Sbjct: 456 GISKKQQAQLFKAFGQADTSITRQYGGTGLGLVITQKLVKEMQGRIELISIPEQGSTFGF 515
Query: 900 TVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
T+ + R +L +S + + LV + A L++ + +A +
Sbjct: 516 TIVIEKSARAALSNIA------LSRLQKQKVLVFETNEYAALACTQLLRQWKTEPLLAKT 569
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
Q +L +T S++ + V K + + Y +KQ + G +
Sbjct: 570 EQQWQQFL-NTRYDSIVIGYSHV--------KNLQPLFKY-IKQAKSFSG--------NV 611
Query: 1020 FLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLL 1079
+L S D L + G+ L+KP+ D + + P +
Sbjct: 612 IILVNSSDPGIYDTLMAAGVTHCLSKPINHKSFANALISDKTDFNTITYHKALPIF--MR 669
Query: 1080 KGKQILVVDDNMVNRRVAEGALK-KHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
K ++ VDDN N ++ L + + TC++ G+ AV++ H+FD FMD+QMP
Sbjct: 670 KDINVMAVDDNPANLKLISVMLADRTNHVTTCIN-GQQAVEQ-AKNHHFDLIFMDIQMPV 727
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
+DG A QI+ + +IN + P++A+TA V+ EQ ++ G
Sbjct: 728 LDGINACLQIK--KGKIN------------------YKTPVIAVTAHVLSGEKEQFLQLG 767
Query: 1199 MDDYVSKPFED 1209
MDD ++KP ++
Sbjct: 768 MDDCLAKPIDE 778
>gi|333983170|ref|YP_004512380.1| Hpt sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333807211|gb|AEF99880.1| Hpt sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 1134
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 202/661 (30%), Positives = 318/661 (48%), Gaps = 114/661 (17%)
Query: 558 EMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEA 617
E+H R +K +P + + G + L H+ +I Q+ D + E ++A+A
Sbjct: 357 EIHWRVWKKTSLPMITLMLTFGFLGALLAQSHV------KIKQLNYD---LAERASQAQA 407
Query: 618 ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDV 677
A AKS FLA +SHEIRTPMN +LG+ +L ++L + + +G+ L+ +IND+
Sbjct: 408 ASKAKSHFLANMSHEIRTPMNAILGLAYLLEQSQLTDDTRELVRKIRVAGRSLLGIINDI 467
Query: 678 LDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGR 737
LD +KIE+GRLE E PFHL DVLDN+ + S+ A K IEL VI P
Sbjct: 468 LDFSKIEAGRLEVEHAPFHLSDVLDNLACIMSASAGDKDIEL-----------VISPPS- 515
Query: 738 FRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNT 797
II L G++++ Q V ++L N+++ +D+ Y
Sbjct: 516 --MIINQLYGDALRLEQ------VLINLTG-----------------NAIKF-TDEGYVG 549
Query: 798 LSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
LS + + EQ ++ L +V DTG+GI E Q IF PF QAD
Sbjct: 550 LSVAVIAEN----------------EQ--QVTLRFSVRDTGIGITPEKQAEIFAPFNQAD 591
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLD-PKWQ 916
ST+R +GGTG+GL+ISR LVE MGGEIG +S G+GS F FT+ + + + + PK
Sbjct: 592 ISTTRRFGGTGLGLAISRWLVEEMGGEIGVISAFGSGSEFWFTLPLDKADTSVMSAPKMS 651
Query: 917 QYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVL 976
Q + L+ DD I + + L H+ +S + A +L + +
Sbjct: 652 Q----------IEVLIADDNPIARDALGNSVTALGWKAHIVDSGEAALHHLLTRAAIAPY 701
Query: 977 PQL-ALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDEL- 1034
L ++++D + + GL + ++ ++GG I ++ T+ S RD+L
Sbjct: 702 TSLRQIIMLDWKMPGMD-GLATAHAIRDSLKEGG-------DPIIIMVTAYS---RDQLA 750
Query: 1035 ---KSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSL-GHLLKGKQILVVDDN 1090
+S +L+KP+ S L + + + +P++ G L ++L+VDD+
Sbjct: 751 AFPESKLADVVLSKPVTTSSLYNAVSQALAARDATEIAPTRPAVHGQRLSHLRLLIVDDS 810
Query: 1091 MVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP-PHNFDACFMDLQMPEMDGFQATWQIR 1149
+NR VA+ GA V+ + G+ A++ L P D MD+QMP MDG++AT +IR
Sbjct: 811 DINREVAQRIFAGEGAKVSLANDGQQALNWLQAHPGQVDIVLMDVQMPIMDGYEATRRIR 870
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
N L +PI+A+TA + E GMDD++ KPF+
Sbjct: 871 LDAN--------------------LAELPIIALTAGAFKTQEEAARDAGMDDFIPKPFDV 910
Query: 1210 E 1210
E
Sbjct: 911 E 911
>gi|339484610|ref|YP_004696396.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
gi|338806755|gb|AEJ02997.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
Length = 1346
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 186/623 (29%), Positives = 294/623 (47%), Gaps = 103/623 (16%)
Query: 607 EMMELKAR--AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAH 664
E M ++AR AEAA +AK++FLA +SHEIRTPMN VLGM +L T LD+ Q Y +
Sbjct: 809 ETMLIQARQQAEAASIAKTRFLAMMSHEIRTPMNAVLGMAYLLSKTSLDSQQNAYLRNIE 868
Query: 665 NSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724
S L+ +IND+LD +KIE+ ++E + +PF L+ +L+N+ ++ S A K I++ IYV+
Sbjct: 869 GSSNILLGVINDILDYSKIEANKIELDNIPFDLNSILENLSAMASIAAKDKAIDVLIYVA 928
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSL 784
VP GDP R QI V+L ++ D + ++ ++
Sbjct: 929 PDVPRHFTGDPLRLSQIF--------------------VNLTNNAIKFTDQGEVIIRITI 968
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
+ + + L +V D+G+G+ E
Sbjct: 969 ENTEDSETAI-----------------------------------LAFSVTDSGIGMTSE 993
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
+F F QADSS +R +GGTG+GLSIS L + M G+I S+ G GS F TV
Sbjct: 994 QMEGLFKAFSQADSSITRRFGGTGLGLSISHRLAQQMSGDIVAESQYGKGSRFYCTVKL- 1052
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLAC 964
+ DP + ++ R L+ ++IDD + +Q L NS+ A
Sbjct: 1053 ----HRPDPHEEPWISLPDTLRSLKIMIIDDHATTRAALSEIVQSLGWNAVAINSIAEAS 1108
Query: 965 SYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYM---LKQQRRKGGLEISRNLPKIFL 1021
L+D S LP L+L+ + + +H + L RR PKI L
Sbjct: 1109 EQLADPDS---LP-FDLLLLTTHLANPGYRETIHAIEVALPDSRR----------PKIIL 1154
Query: 1022 LATSISETDRDE-LKSDGIVTLLTKPLR-LSVLIGCFQEDPESSKKLQQKRKKPSLGHLL 1079
+ +++ ++ + ++ G+++ L KP L + E++ K QK+ ++
Sbjct: 1155 ITSNLEDSLFSKGNETQGMISALIKPFTPLGLFDTVAALFSETAGKADQKQGSSAIRKQF 1214
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFDACFMDLQMP 1137
G ILV +DN VN+ + L G V+ G +D L + H FD FMD+QMP
Sbjct: 1215 AGAHILVTEDNEVNQILISELLSNLGMTVSLARNGIECLDLLRTSDSHPFDLIFMDIQMP 1274
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EM+G +A IRH+ +++ L +PI+A+TA+ + + MK
Sbjct: 1275 EMEGLEA---IRHIRQDLH-----------------LTDIPIIALTANTKEHDQHEFMKA 1314
Query: 1198 GMDDYVSKPFEDEQLYTAVARFF 1220
GM+D++ KPF+ EQLY + RF
Sbjct: 1315 GMNDFLPKPFDPEQLYQILYRFL 1337
>gi|337265910|ref|YP_004609965.1| integral membrane sensor hybrid histidine kinase [Mesorhizobium
opportunistum WSM2075]
gi|336026220|gb|AEH85871.1| integral membrane sensor hybrid histidine kinase [Mesorhizobium
opportunistum WSM2075]
Length = 779
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 194/634 (30%), Positives = 291/634 (45%), Gaps = 132/634 (20%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISL 673
+AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L TEL A Q + SG L+++
Sbjct: 226 KAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTELTARQKTFTDVIVKSGNALLTI 285
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
IND+LD +KI +G+L + PF L + +++V +L S++ +K +EL + V R+P V+G
Sbjct: 286 INDILDFSKINAGQLTLDPAPFRLAEAVEDVATLVSARVAEKNLELIVRVDPRLPTYVVG 345
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
D GRFRQI+TNLVGN++KFT+ KGH+ + V +++N V +
Sbjct: 346 DAGRFRQIVTNLVGNAVKFTE-KGHVLIDVG----------------GETVNGVVQLKLR 388
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
V +T G P +E F +D ++T
Sbjct: 389 VEDTGIGIPAEKLQNVFEKFAQVDGSST-------------------------------- 416
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
R + GTG+GL+I+ LV+LM G+IG SE G GS F F V + D
Sbjct: 417 --------RRHEGTGLGLAIAARLVDLMAGKIGVESEIGRGSVFWFAVPLPLHTAQARD- 467
Query: 914 KWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCS 972
+ VP DV+ G R LVIDD + E+ L+ A S + ++L
Sbjct: 468 ---EIVPVDVT---GARVLVIDDNPVNREILLEQLRSWSFDCAAAESGAVGLAFLDRAYQ 521
Query: 973 TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRD 1032
+ +++D + V + R +P + L TS+ + D
Sbjct: 522 LGA--AVDCIILDYQMPGMNGADVARAIAADSRLSA-------IPIVIL--TSVDQVDFG 570
Query: 1033 ELKSD-GIVTLLTKPLRLSVLIG----CFQEDPESSKKLQQKR----------------- 1070
++ D GI LTKP R +VL+G Q+ K Q R
Sbjct: 571 KMIIDFGIAAHLTKPARSAVLLGTVISVIQKARSQVGKAQFTREPVQPQPQPAPLPFTVI 630
Query: 1071 KKPSLGHLLKGKQ---------ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD-- 1119
+ P+L + + IL+ +DN VN+ V L G GR AV+
Sbjct: 631 RGPALPVVPAPESTATPNGPIDILIAEDNDVNQLVFGQILNGLGLSYRIAGNGRTAVEMY 690
Query: 1120 -KLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
L P MD+ MPEM+G++AT IR +E +SG H+P
Sbjct: 691 RSLRP----RLILMDVSMPEMNGYEATRAIRAIET------SSG------------GHIP 728
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
I+ +TA ++ ++C++ GMDDY+ KP ++L
Sbjct: 729 IIGVTAHALKGDRDKCIEAGMDDYLPKPVSPDRL 762
>gi|288933810|ref|YP_003437869.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
gi|288888539|gb|ADC56857.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
Length = 916
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 189/628 (30%), Positives = 299/628 (47%), Gaps = 119/628 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +QI+TNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTE-HGNIDVLVEQRAISNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++++T G P D+ +
Sbjct: 447 --------------IQIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAV 954
F ++ L+P +PD+ GL R ++ + A+ T LEM
Sbjct: 513 WFHISL------DLNPNA---IPDMLNTDGLTGKRLAYVEANATAAQCT------LEMLA 557
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ L Y S T S+ Q ++L+ V +++ ++K +S
Sbjct: 558 ----ATPLEVIY-SPTFSSLAEAQYDILLVGIPVSMRDLSPHREKLVK------ACAMSD 606
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF---QEDPESSKKLQQKRK 1071
N + L ++ + LK DG+ L KPL + L+ P S+ Q
Sbjct: 607 N---VLLALPCHAQVSAEALKRDGVAACLLKPLTTTRLLPALMATNHAPASAPLTQTDSH 663
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
K + ++ VDDN N ++ L V D G+ AVD+ D
Sbjct: 664 KLPM-------TVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDQ-AKRLQMDLIL 715
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP+MDG +A I HL + P++A+TA ++
Sbjct: 716 MDIQMPDMDGIRACELIHHLSHH--------------------QQTPVIAVTAHALEGQR 755
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L+ + R+
Sbjct: 756 EKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|354596326|ref|ZP_09014343.1| multi-sensor hybrid histidine kinase [Brenneria sp. EniD312]
gi|353674261|gb|EHD20294.1| multi-sensor hybrid histidine kinase [Brenneria sp. EniD312]
Length = 922
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 190/632 (30%), Positives = 293/632 (46%), Gaps = 120/632 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G + + T L+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLNPTQT 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY T S +L+++INDVLD +K+E+G+L E +PF LH+ LD V+ L + A++KG+
Sbjct: 329 DYLLTIERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVVMLLAHTAHEKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + V +PE IGDP R +QIITNL+GN+IKFT ++G+I D+R
Sbjct: 389 ELTLDVQHDIPEQFIGDPLRIQQIITNLLGNAIKFT-EQGNI--------DIR------- 432
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
+++ + N ++L + + D+
Sbjct: 433 --------------------------MEKRRQEGNL--------------VQLEIQIRDS 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GI Q ++F F QAD+S SR +GGTG+GL I++ L++ MGG IGF S+ GSTF
Sbjct: 453 GIGIAERQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLIKEMGGNIGFHSQLNKGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + P P +E+R LR DK HL +E A
Sbjct: 513 WFHINL---------PLNPHAAPANNEYRTLR-----DK---------HLAYIESDPAAA 549
Query: 958 NSMQLACSYLSDTCSTS-VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL-EISRN 1015
+ S T S S L QL D + +G+ +HY L ++ R
Sbjct: 550 QATLNILSQTPLTVSYSPTLEQLPAAPFDILL----LGVPVHYRNTLLDYTPQLRDVCRR 605
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED--------PESSKKLQ 1067
P + L S ++ D ++LK G+ L KP+ L+ Q+ PE+ Q
Sbjct: 606 APYVILALPSFAQMDAEQLKIFGVYACLNKPISAPRLLPLLQDSSVFQLSLLPENITAPQ 665
Query: 1068 QKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
P L ++ VDDN N ++ L++ + G AV + +
Sbjct: 666 ----PPPRARL--PLSVMAVDDNPANLKLIGTLLEEQVETIILCTNGTEAVSQ-ARNRDL 718
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD+QMP MDG +A+ IR PI+A+TA +
Sbjct: 719 DLILMDIQMPGMDGIRASEIIRQFPRH--------------------AKTPIVAVTAHTM 758
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
EQ ++ M+DY++KP +++ L ++R+
Sbjct: 759 SDEREQLLQACMNDYLAKPIDEQMLQKVLSRY 790
>gi|345871481|ref|ZP_08823426.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343920401|gb|EGV31135.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1159
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 192/613 (31%), Positives = 289/613 (47%), Gaps = 100/613 (16%)
Query: 600 QVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDY 659
+V E+ + + +AE +KS FL +SHEIRTPMN VLG+ ML +L LD
Sbjct: 399 RVAERTRELEQARRQAERLARSKSDFLTNMSHEIRTPMNAVLGLGYMLEQQDLPEDALDL 458
Query: 660 AQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQ-KGIE 718
A + SGK L+ +IND+LD +KIESGR+E E PF L VLDN+ ++ ++ A+Q + +E
Sbjct: 459 AHKINQSGKALLGIINDILDFSKIESGRIEIEHAPFALSGVLDNLATIMTATADQEQDLE 518
Query: 719 LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778
L I D +IGD R Q++ NL N+IKFT+ V VH+
Sbjct: 519 LVI-TPDCFDLTLIGDALRLGQVLINLSSNAIKFTRSG---LVEVHI------------- 561
Query: 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTG 838
+ L+ T++ R++L +V DTG
Sbjct: 562 -----------------------------------ETLERTDS-----RVRLKFSVIDTG 581
Query: 839 VGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFS 898
+GI AQ R+F PF QAD+ST+R +GG+G+GL+I R LV+LMGG IG S GSTF
Sbjct: 582 IGIDEAAQTRLFQPFSQADASTTRRFGGSGLGLAICRRLVDLMGGHIGVHSALDEGSTFW 641
Query: 899 FTVTFTEGERNSLDPKWQQYVPDVSEFRG-LRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + F E Q P V + R L+ ++ + + + L + A
Sbjct: 642 FEIAFDLAE---------QQAPQVPQGESQTRVLIAENNPVIRKALATTVATLGWSARQA 692
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
S A + + Q A+VL+D + D L + Q + L +R P
Sbjct: 693 ASGNQALEVV--LADPELQGQNAVVLLDSRMPD------LDGIATAQAIRTALPPNRQ-P 743
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS-LG 1076
IF+L ++ +D ++ + +L+KP+ S L S + + + +PS +
Sbjct: 744 LIFVLGVPRRDSLQDSPETGAVDAVLSKPVTPSQLYNAVIRK-RSHRLGEPPQTQPSAIS 802
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP-PHNFDACFMDLQ 1135
L G ++LVVDD+ +NR+VA GA + GR AVD L P D MD+Q
Sbjct: 803 QRLVGLRLLVVDDSDINRKVASNIFDNEGAEIHLAGDGREAVDWLIAHPDAVDLVLMDVQ 862
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP MDG AT IR + + +P++A+TA ++ +
Sbjct: 863 MPVMDGHDATRLIRRTPS--------------------IAQLPVVALTAGALREQETAAL 902
Query: 1196 KCGMDDYVSKPFE 1208
+ GMD ++SKPF+
Sbjct: 903 EAGMDGFISKPFD 915
>gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
Length = 1324
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 191/626 (30%), Positives = 293/626 (46%), Gaps = 120/626 (19%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ + K A+A AK FLA +SHEIRTPMN +LGM + ++T LD Q Y + S
Sbjct: 592 ELRDAKKMADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
K+L+ +IND+LD +K+E+G+L E + F+L DVLDN++S+ S KA +KGIE + +
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLHVERIDFNLDDVLDNLISVISLKAQEKGIEFLMDIDPH 711
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGDP R Q++ NL GN++KFT +G I +S + +V + V + +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTH-QGEIVISARVRQLNEQQVTLFFAVKDTGIGI 770
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
Q K ++N F DN+ T
Sbjct: 771 TQEKLAGLFNA---------------FSQADNSIT------------------------- 790
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R YGGTG+GLSIS+ LVELMGGEI SE G GSTF F+V
Sbjct: 791 ---------------RQYGGTGLGLSISKQLVELMGGEISAHSEEGKGSTFEFSVVCGLQ 835
Query: 907 ERNSLDPKWQQYVPDVSE-FRGL---RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
E + D+++ GL R LV+DD + A ++ +S+
Sbjct: 836 EAR---------MRDIAQPLHGLADKRVLVVDDN--------------DSARNILDSLLT 872
Query: 963 ACSYLSDTCSTS--VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
A + T S L ++ D D + + L + + GL R K F
Sbjct: 873 AMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKSLGL---REQTKCF 929
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLR----LSVLIGCFQEDPESSKKLQ-QKRKKPSL 1075
L+ + D S + +L+ KP+ L ++ + D K+ + + +KP+
Sbjct: 930 LVTAYGRDIHLDSENSKLVDSLIVKPVNPSNLLDAIVTSYGIDHVRHKQTEVHQHRKPNF 989
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
G+ +L+V+DN VN+ VA G L++ G V + G+ A+ +L +FD MD+Q
Sbjct: 990 A----GQTLLLVEDNEVNQEVALGLLQETGLSVIVANNGQEALQRLAEK-SFDLVLMDMQ 1044
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQC 1194
MP MDG AT +IR E W +PI+AMTA+ + E C
Sbjct: 1045 MPVMDGITATKKIRADER---------------------WKTLPIVAMTANAMATDIEHC 1083
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ GM+D++SKP + ++ Y + +F
Sbjct: 1084 TQAGMNDHLSKPIDVDKFYHVLKQFL 1109
>gi|254467598|ref|ZP_05081007.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales bacterium
Y4I]
gi|206684346|gb|EDZ44830.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales bacterium
Y4I]
Length = 761
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 195/675 (28%), Positives = 308/675 (45%), Gaps = 140/675 (20%)
Query: 568 PVPW------TAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
P+PW A++ S+GV+ T E D E +AR EAAD+A
Sbjct: 193 PLPWFASREFRALDFSVGVLEETF---------------AERDEREFALEQAR-EAADIA 236
Query: 622 ---KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVL 678
KS+FLA +SHEIRTPMNGV+GM ++L +T LD Q YA+T SG L+++IND+L
Sbjct: 237 NRAKSEFLANMSHEIRTPMNGVIGMAELLQETRLDDDQRMYAETIGKSGSALLTIINDIL 296
Query: 679 DQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRF 738
+ +KIE+G+LE PF+L +++V++L S KA +KG+E+ + +PE+ GD GR
Sbjct: 297 NFSKIEAGKLELSCAPFNLQTAVEDVVTLLSPKAAEKGVEVTMRYDPALPELFEGDAGRI 356
Query: 739 RQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTL 798
RQ+ITN+ GN++KFT + G++F+ V + V+ +V + + Q + +++
Sbjct: 357 RQVITNIAGNAVKFTCE-GYVFIEVTGTAQPDGGLLVRLQVTDTGIGIAQDRIGRIFRA- 414
Query: 799 SGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858
F+ DN T
Sbjct: 415 --------------FEQADNAAT------------------------------------- 423
Query: 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN--SLDPKWQ 916
R + GTG+GL+IS L+ELMGG + S PG GS F+ + E+ + D +
Sbjct: 424 ---RNFEGTGLGLAISSRLLELMGGSVEVQSVPGKGSVFTIQIPLRASEKTLPAQDSGGR 480
Query: 917 QYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVL 976
F GL L++DD + + L +A A S LSD
Sbjct: 481 S-------FAGLSVLLVDDLELNRVILSERLNTWGVACTQAASAHEGLEILSDA------ 527
Query: 977 PQLALVLIDKDVWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELK 1035
QL D + D ++ + H + + R G E +P + +L++ + R + +
Sbjct: 528 -QLDGRRFDVILLDYQMPAMDGHELAARIRAMPGFE---TVP-LIILSSVDNALCRADCE 582
Query: 1036 SDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS-----------LGHLLKGKQI 1084
+ G KP+R Q S+ L + +KP+ G LLK +
Sbjct: 583 TLGACEFALKPVR------AVQLRQVMSRLLSRPVQKPADAAGAEAGLQPEGQLLK---V 633
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+ +DN N+ V LK +++ G AV + D MD+ MPEMDG +A
Sbjct: 634 LLAEDNRTNQLVVTKMLKDAPLVISIAGNGAEAVARFR-AERPDIVLMDMMMPEMDGIEA 692
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T ++R +E E G PI+A+TA+ +Q E+C++ GMDD++S
Sbjct: 693 TAEMRRIEAE-----------------TGRGKCPIVALTANALQTHREKCLQAGMDDFLS 735
Query: 1205 KPFEDEQLYTAVARF 1219
KP + L A+ ++
Sbjct: 736 KPINKKALTEAIGKW 750
>gi|121998929|ref|YP_001003716.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
gi|121590334|gb|ABM62914.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
Length = 1643
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 196/640 (30%), Positives = 301/640 (47%), Gaps = 111/640 (17%)
Query: 589 HIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM 648
+IF + + V +D E+ + + +AE A AKS+FLA +SHEIRTP+N V+G+ Q+L+
Sbjct: 895 YIFRLSSGEVVAVYDDLTEIKQAQEQAEQASRAKSEFLANMSHEIRTPLNAVIGLSQLLL 954
Query: 649 DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLF 708
+T LD Q D+ +S + L+ +IND+LD +KIESG+LE + F LH+V+D++ +LF
Sbjct: 955 ETSLDKRQQDHLNKVLSSSRMLLGIINDILDFSKIESGQLELDTHTFDLHEVVDHLAALF 1014
Query: 709 SSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL--- 765
++K +EL + ++P V++GD R Q++TNL+ N+ KFT + G + + + L
Sbjct: 1015 GEVGHRKQLELVYSLPPQIPCVLVGDSLRITQVLTNLLSNATKFTPEGGEVEMGIQLVEP 1074
Query: 766 --ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME 823
AD V + V+D + S E
Sbjct: 1075 PKADSVTLRFFVRDTGIGMS--------------------------------------EE 1096
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
QLG R+F F QAD+ST+R YGG+G+GL ISR LVE MGG
Sbjct: 1097 QLG---------------------RLFRAFTQADTSTTRRYGGSGLGLVISRRLVERMGG 1135
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
+ S+PG GSTF+F +T G + + P G L++DD E
Sbjct: 1136 ALEATSKPGQGSTFAFELTLPLGTPQA---PATLHCPKTE---GRHVLIVDDHEPTRETL 1189
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
R L V A + + A + S +L+D + G L+
Sbjct: 1190 REMLLHCHFEVEEATNGEEAIEKV--IASERRDDPFDFILMDWMMPGGMSGSETCRALEA 1247
Query: 1004 QRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPES 1062
R+ G L +R P + + A S+ D E G+ LL+KP+ +VL +Q +
Sbjct: 1248 CRQSGDLAQTRP-PVLMVSAYDPSQIDLPE----GLTRELLSKPITANVL---YQALLRA 1299
Query: 1063 SKKLQQKRKKP-SLGHL--LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCG--RAA 1117
+ + P S+GH L G +IL+ +DN N+ VA L+K GA V V+ G
Sbjct: 1300 ERGDRAANMGPESMGHTPNLAGYRILIAEDNETNQEVASLLLEKTGAQVQVVNNGAEALE 1359
Query: 1118 VDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177
PP D MDLQMP +DGF+AT ++R +
Sbjct: 1360 AAHEAPP---DLILMDLQMPVLDGFEATRRLRE----------------------AGYGG 1394
Query: 1178 PILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
P+LA++A V + ++ GM +++KP + EQLY +A
Sbjct: 1395 PVLALSAAVTEGDQQRARAAGMGAHIAKPIDREQLYARLA 1434
>gi|94264870|ref|ZP_01288645.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93454691|gb|EAT04956.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1211
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 187/619 (30%), Positives = 292/619 (47%), Gaps = 108/619 (17%)
Query: 603 NDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL--DYA 660
D E+ + + AEAA+ +KS+FLA +SHEIRTPMN ++G+ Q+ + ++ DY
Sbjct: 395 QDISEIKKAQEAAEAANRSKSEFLANMSHEIRTPMNAIIGLGQLALKSQPPPPPRLHDYL 454
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
+ S L++LIND+LD +KIE+G+L + VPF L ++L+ + L + +A +KG+EL
Sbjct: 455 EKITGSAATLLTLINDILDFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELL 514
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
V P ++GDP R Q++ NL N+IKFTQ +G + +S +AD + ++ V
Sbjct: 515 FAVDSGAPRQLVGDPHRLGQVLINLTSNAIKFTQ-QGEVTISFEVADPTADPLILRVAVR 573
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
+ + + ++++ + F D T
Sbjct: 574 DTGIGMSPEQIERIF---------------QPFTQADGATT------------------- 599
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
R +GGTG+GLSI+ LV+L+GGEI S PG GSTFSFT
Sbjct: 600 ---------------------RKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFT 638
Query: 901 VTFTEGE-RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
E +L P +P V + RGLR LV+DD + +V R L V A+S
Sbjct: 639 CLLGRHEPHKALCP-----LPPV-DLRGLRVLVVDDNATARQVLRQTLASFSFRVEEADS 692
Query: 960 MQLACSYLSDTCSTSVLPQLAL---VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
+ A S L+ +L + V+ + D + + +++ Q
Sbjct: 693 GRRALSLLARAAEDGRPYELVILDWVMPEFDGLECAAAIAADPLIEPQ------------ 740
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDP---ESSKKLQQK 1069
P + LL E R+E G+ LTKP+ S L + CF ++ ES + +
Sbjct: 741 PLLILLTAHGREEIREEAAGRGLRHFLTKPVLPSTLYDTIMECFGQEGISRESDRGRRSD 800
Query: 1070 RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
+ + L G ++LV +DN +N++VA L G + GR AV++ +D
Sbjct: 801 ELELTAREKLAGSRLLVAEDNALNQQVAAELLAAVGIHCDLANNGREAVEQYR-RQTYDG 859
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMPEMDG+QAT IR L +G+ VPI+AMTA +
Sbjct: 860 VLMDIQMPEMDGYQATGAIRAL--------PAGQ------------QVPIIAMTAHALAG 899
Query: 1190 SNEQCMKCGMDDYVSKPFE 1208
E+C+ GMD+++ KP E
Sbjct: 900 EREKCLAAGMDEHIPKPVE 918
>gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
Length = 1320
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 197/631 (31%), Positives = 308/631 (48%), Gaps = 100/631 (15%)
Query: 596 NRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAA 655
R +++N E+ A+AEA+ AKSQFLA +SHEIRTPMNGV+G+ +L+DT+LD
Sbjct: 640 TRRMEIQN--QELDRALAQAEASTQAKSQFLANMSHEIRTPMNGVIGITGLLLDTDLDPE 697
Query: 656 QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQK 715
Q A+ +SG++L++LIND+LD +KIE+G+LE E + F L +++ VL + + A++K
Sbjct: 698 QRRLAEIVRDSGENLLALINDILDFSKIEAGKLELEHLEFDLRLLIEEVLEMMAFNAHEK 757
Query: 716 GIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775
+EL ++ +VP V GDP RQ+I NL+GN+IKFT+ +G V + LA
Sbjct: 758 DLELTYRIAPQVPTAVRGDPRYLRQVIVNLMGNAIKFTE-RGE--VGLQLA--------- 805
Query: 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVE 835
LE++ +V+++ G P +QLG
Sbjct: 806 ----LERAEAGRALIRFEVHDSGIGIP-------------------EDQLG--------- 833
Query: 836 DTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGS 895
++FT F Q DSST+R +GGTG+GL I++ L +LM G+IG S PG GS
Sbjct: 834 ------------KLFTAFNQVDSSTTRRFGGTGLGLVIAKQLAQLMNGDIGLESRPGQGS 881
Query: 896 TFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH 955
F FT F + + + + + + +D+++ A + R ++ +A
Sbjct: 882 RFWFTAEFECSPQTATEYRVCERD-IDDVRVLVVDDHLDNRAQAASLLRAWGCQVAVAGR 940
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
++++ + V LID + D GL L ++KQ+ EI
Sbjct: 941 AGDALRALHQAVRAGAPFDV------ALIDLRMPDPN-GLQLARLIKQEP-----EIRDT 988
Query: 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF-----QEDP--ESSKKLQQ 1068
++ LL D L+S +TKPLR ++ C +E P E
Sbjct: 989 --RLVLLTALAKREDYAYLESGDFAGYVTKPLRHHLVRDCLLRVMGRERPVLEPVSPPVG 1046
Query: 1069 KRKKPSLGHLLKGK-QILVVDDNMVNRRVAEGALKKHGAIVTCVDC-GRAAVDKLTPPHN 1126
+ P +G + ++L+VDDN N+ VA G L+K G + C G A++ L+
Sbjct: 1047 PDRIPGIGRPAHPEARLLLVDDNPTNQIVARGILEKLGYPKPDIACNGLEALEALSRA-R 1105
Query: 1127 FDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186
+D MD QMPEMDGF+ IR E + + HVPI+AMTA V
Sbjct: 1106 YDLVLMDGQMPEMDGFETARLIRRGEAGVLDP-----------------HVPIVAMTALV 1148
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
+ +C+ GM+ Y+SKP + +L +A
Sbjct: 1149 MPGDVRRCLDAGMNAYISKPVQPHELSRIIA 1179
>gi|117926684|ref|YP_867301.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610440|gb|ABK45895.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 2654
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 185/618 (29%), Positives = 294/618 (47%), Gaps = 96/618 (15%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
+ + K A+AA+ AKS FLA +SHEIRTPMN ++GM + + T+L+ Q +Y S
Sbjct: 1827 IQQAKEIADAANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTDLNGRQRNYITKVKRSA 1886
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+G+L EF+ F L DVLDN+ +L KA +KG+EL + +
Sbjct: 1887 EALLGIINDILDFSKIEAGKLTMEFIDFRLEDVLDNLSNLVGLKAEEKGLELHFSLPPGL 1946
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
+ GDP R Q++ NL N++KFT V VK + LE++
Sbjct: 1947 HTALKGDPLRLGQVLINLGNNAVKFT---------------AHGDVVVKVQQLERTTE-- 1989
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
RIKL +V+D+G+G+ E +
Sbjct: 1990 ---------------------------------------RIKLYFSVKDSGIGMTPEQKG 2010
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
+F F QAD+ST+R +GGTG+GL+IS+ LVE+M GEI S P GS F F+ F GE
Sbjct: 2011 LLFKSFSQADASTTRKFGGTGLGLAISKRLVEMMEGEIDVDSVPEQGSDFHFSAWFGLGE 2070
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
+ ++ + + L LV+DD S E+ Q V A S A + +
Sbjct: 2071 -----VRGEETLRVERDLANLHLLVVDDNSTAREILAEMAQSFGFRVDTAESGAAALAKV 2125
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+ + Q +VL+D + D + GL ++ + + LP + ++
Sbjct: 2126 EAAAALNDPVQ--VVLMDWKMPDMD-GLQTARAMQHN------DDLQELPMVIMVTAYGR 2176
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVLI----GCFQEDPESSKKLQQKRKKPSLG-HLLKGK 1082
E + LTKP+ S L+ G + S ++ +++ + S LL+G
Sbjct: 2177 EEAVQAATGVELKGFLTKPVSPSTLLDAVMGALGREGVSGRRAHERQVEESEAIILLRGA 2236
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
++L+V+DN +N+ +A L G + + G A+ L FD MD+QMP MDG+
Sbjct: 2237 KVLLVEDNEINQELALELLANAGILAKLAENGVEALQALQ-REPFDGVLMDVQMPIMDGY 2295
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
AT +IR +P++AMTA+V+ A E+ GM +
Sbjct: 2296 TATREIRK--------------------QAAFKDLPVIAMTANVMAADLEKAKAAGMQAH 2335
Query: 1203 VSKPFEDEQLYTAVARFF 1220
VSKP + +++T +A++
Sbjct: 2336 VSKPIDVREMFTTMAQWI 2353
>gi|283778609|ref|YP_003369364.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
gi|283437062|gb|ADB15504.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
Length = 1314
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 202/638 (31%), Positives = 289/638 (45%), Gaps = 130/638 (20%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS FLA +SHEIRTP+NGV+GML++L T LD Q Y A +S L+ LINDVLD
Sbjct: 599 AKSAFLANMSHEIRTPLNGVIGMLELLGTTTLDERQNRYVHIARSSAGTLLGLINDVLDF 658
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+KIE+G+LE E V F LH +L++V +FS +AN+KG+EL+ + VP V GDP R RQ
Sbjct: 659 SKIEAGKLELERVQFDLHSLLEDVAEMFSHRANEKGLELSCRILPGVPTNVYGDPERIRQ 718
Query: 741 IITNLVGNSIKFTQDKGHIFV----SVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYN 796
++ NLV N+IKFT+ +G + + VH + R ++ V D
Sbjct: 719 VLINLVNNAIKFTK-QGEVILRAEQQVHSSGVSRMRISVID------------------- 758
Query: 797 TLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856
T G P + + F +D + T
Sbjct: 759 TGIGIPADRSSQLFAPFTQVDASTT----------------------------------- 783
Query: 857 DSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQ 916
R YGGTG+GL+I R L+ELMGG +G S G GSTF V + N+ P+
Sbjct: 784 -----RKYGGTGLGLAICRQLIELMGGRVGVDSVEGNGSTFWCEVPLEVAQVNT-APR-- 835
Query: 917 QYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVL 976
P RGL L +DD E+ L M V A A + L +
Sbjct: 836 --SPVAETLRGLAVLTVDDTDTNLEILHDQLTSWGMRVTAARDGLQALAQLRTAVRSG-- 891
Query: 977 PQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE-TDRDELK 1035
+ LV++D + + + GL L +K L NL L+ TS+ + DR +
Sbjct: 892 KKYPLVILDHQMPEMD-GLQLAAAIKGD----ALLRDTNL----LMLTSVDQLVDRSKWS 942
Query: 1036 SDGIVTLLTKPLRLSVLIGCF------QE------DPESSKKLQQKRKKPSLGHLLK--- 1080
S G+ ++TKP+R S L QE D +SS L P+ +L+
Sbjct: 943 SLGLAGVMTKPIRQSRLFDAIAGVLKHQESLPALPDSDSSATLPAP-AAPTKPVMLREVA 1001
Query: 1081 --------------------GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
G ++LV +DN +N+ V L+ G V G A+D
Sbjct: 1002 SAPAYSRTEGATPQEILAQCGLKLLVAEDNEINQMVTSEILRGSGYACDVVSNGNQAIDA 1061
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
L + MD QMPE+DGF AT +IR LE SG + + G +P++
Sbjct: 1062 LV-RGGYALVLMDCQMPELDGFAATKKIRALEQ-------SGSLTHAVQG-----PMPVV 1108
Query: 1181 AMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
A+TA+ + + C+ GM+DY +KP + L +AR
Sbjct: 1109 ALTANAVYGDRDVCLAAGMNDYTTKPVDRAILLGTIAR 1146
>gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1179
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 191/636 (30%), Positives = 298/636 (46%), Gaps = 112/636 (17%)
Query: 585 LLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGML 644
L+ G + AA I++ + E++ K AEAA AK FLAT+SHEIRTPMNG++GM
Sbjct: 523 LITGSV--AAFQDISERKFTERELLRAKESAEAASRAKGDFLATMSHEIRTPMNGIIGMT 580
Query: 645 QMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNV 704
++ +DTE+ A Q +Y +S L+++IND+LD +KIESG++E E V F + ++ +
Sbjct: 581 ELALDTEMSAEQREYLNMVKSSADALLTIINDILDFSKIESGKMELESVEFDVRNLFASA 640
Query: 705 LSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH 764
+ +A QKG+EL V +P++++GDPGR RQ++TNL+GN+IKF++ G I + +
Sbjct: 641 EKTLAIRAAQKGLELVYDVDGAIPDLLVGDPGRLRQVLTNLLGNAIKFSE-HGAITLRMK 699
Query: 765 LADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQ 824
L + V+ +V ++ + G PV +E F D
Sbjct: 700 LLMQTSDGLCVRIEVADQGI---------------GIPVDKLAHIFEAFTQAD------- 737
Query: 825 LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGE 884
+ST+R YGGTG+GL+IS LV MGG+
Sbjct: 738 ---------------------------------TSTTRKYGGTGLGLAISSKLVAAMGGD 764
Query: 885 IGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR 944
+ S+ G GS F FT T + + V L AL++DD + ++
Sbjct: 765 LSVESQVGIGSVFGFTTTLPVALNQPSEISCESLV-------NLSALIVDDNATNCKLLS 817
Query: 945 YHLQRLEMAVHVANSMQLACSYLSDTCSTSV---LPQLALVLIDKDVWDKEIGLVLHYML 1001
+++ M VA S + L + L L VL D D +D L M
Sbjct: 818 QQIKKWGMRPTVAGSASEGMAMLREAQQEQAPFDLLLLDAVLSDADGFD--FAAQLQSMP 875
Query: 1002 KQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE 1061
++ R + +L+++ D + + GI L+KP+ LI +
Sbjct: 876 QKPR-----------ALVMMLSSASLRADAERCRQAGISNYLSKPIDRWELIKTIK---- 920
Query: 1062 SSKKLQQK----RKKP-SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRA 1116
++ LQ + P + H L IL+ +DN VN+++A L K G V + G
Sbjct: 921 AALGLQVDDVFVQTAPLASAHSLN---ILLAEDNRVNQKLAITLLGKWGHRVVLANNGIE 977
Query: 1117 AVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH 1176
AV+ +FD MDLQMPEM G +AT IR + ++ G H
Sbjct: 978 AVEH-AGRVDFDVILMDLQMPEMSGMEATRLIREQD--------------QLRGR----H 1018
Query: 1177 VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
I+AMTA+ + ++C+ GMDDY++KP E+L
Sbjct: 1019 SRIVAMTANAMSEDRQRCLDAGMDDYIAKPLNTEKL 1054
>gi|406606624|emb|CCH41996.1| Hybrid signal transduction histidine kinase J [Wickerhamomyces
ciferrii]
Length = 1043
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 197/611 (32%), Positives = 297/611 (48%), Gaps = 83/611 (13%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLI 674
AE A+ AKS+FL SHE+RTP NG+L Q+ +DTEL Q + T HN L+++I
Sbjct: 482 AELANSAKSEFLGIFSHELRTPFNGILNYTQLTLDTELTQYQREMLSTVHNLANSLLTII 541
Query: 675 NDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD 734
ND+LD +KIE+ R+ E F L + L + K+ +K ++L V P+ +IGD
Sbjct: 542 NDILDISKIEANRMTVEEAEFSLRGTVFGALKTLAVKSIEKPLDLIYEVDSSFPDSIIGD 601
Query: 735 PGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKV 794
R RQ+I NLVGN+IKFT KGH+ +SV A D L+ ++ ++ V
Sbjct: 602 SFRLRQVILNLVGNAIKFTS-KGHVKLSVKKATD----------PLDTQISKTIENNNYV 650
Query: 795 YNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFM 854
T SG + D + D+T +E V DTG+GI E IF F
Sbjct: 651 IGTNSGNLINDSAPQIKK----DSTLVLE--------FCVSDTGIGIKKEKLDLIFETFT 698
Query: 855 QADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPK 914
QAD ST+R +GGTG+GLSIS+ L+ LMGGEI +S GS F FT+ + + N +
Sbjct: 699 QADGSTTRKFGGTGLGLSISKKLIHLMGGEIWVISAFREGSKFYFTIATSPAKINFVKQS 758
Query: 915 WQQYVPDVSEFRGLRALVIDDKS--IRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCS 972
++ + + D++S IR ++T +L+ VH ++ DT
Sbjct: 759 DALLTFNLHQILFISTNFSDEESEKIRKDLTELNLR--PTVVHDIAEVKSEDQSKFDT-- 814
Query: 973 TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI----FLLATSISE 1028
++ID EIG L R LP+I F+L + E
Sbjct: 815 ---------IIIDS----IEIGKSL----------------RELPEIKYIPFVLLNPMIE 845
Query: 1029 TDRDELKSD-GIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
++ D GI + P L+ L G + ES R PS + + IL+
Sbjct: 846 GLNMKICLDLGIQSYGNTPCSLADLAGYLKPALES-------RIVPSDDNTPQSYTILLA 898
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN+VN+++A L+K+G V+ V G A +++ +D MD+QMP M GF+AT +
Sbjct: 899 EDNLVNQKLAVRILEKYGHQVSVVKNGLEAFEEVKKKR-YDVVLMDVQMPIMGGFEATEK 957
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR E E+N + F +PI+A+TA + E+C++ MD+Y+SKP
Sbjct: 958 IRLWEKEVN--------PLDPFS----VRLPIIALTAHAMLGDRERCLENQMDEYISKPL 1005
Query: 1208 EDEQLYTAVAR 1218
+ L +A+
Sbjct: 1006 KPNLLVQTIAK 1016
>gi|365848014|ref|ZP_09388494.1| signal transduction histidine-protein kinase BarA [Yokenella
regensburgei ATCC 43003]
gi|364571408|gb|EHM48995.1| signal transduction histidine-protein kinase BarA [Yokenella
regensburgei ATCC 43003]
Length = 917
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 191/631 (30%), Positives = 299/631 (47%), Gaps = 125/631 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTTTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD +++L + A+ K +
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEIVTLLAHSAHDKNL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I D
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 VLVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ + A+ T + +
Sbjct: 513 WFHINL------DLNPNVVSDGPLTDCLVGKRLAYVEANAAAAQST----------LDLL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQ----LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
+ L Y + + S LPQ + L+ I + D L HY L I+
Sbjct: 557 ATTPLEVVY---SPTFSALPQDHYDILLIAIPVSMRD----LDAHY--------DKLAIA 601
Query: 1014 RNLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKK----LQQ 1068
R++ LLA ++ + LK +G L KPL + L+ S+ L
Sbjct: 602 RSMTDYLLLALPCHAQVSAEMLKQNGAAACLLKPLTATRLLPALTAYGRHSQPVPPLLVD 661
Query: 1069 KRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
K P ++ VDDN N ++ L+ VT D G+ A+++ D
Sbjct: 662 NNKLP--------MTVMAVDDNPANLKLIGVLLEDQVQYVTLCDSGKQAIER-AKQMQLD 712
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD+QMP+MDG +A IR L ++ P++A+TA +
Sbjct: 713 LILMDIQMPDMDGIRACELIRQLPHQ--------------------QQTPVIAVTAHAMA 752
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+ +L + R+
Sbjct: 753 GQKEKLLSAGMNDYLAKPIEENKLRNLLLRY 783
>gi|260599137|ref|YP_003211708.1| hybrid sensory histidine kinase BarA [Cronobacter turicensis z3032]
gi|260218314|emb|CBA33302.1| Signal transduction histidine-protein kinase barA [Cronobacter
turicensis z3032]
Length = 919
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 198/630 (31%), Positives = 297/630 (47%), Gaps = 122/630 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+S+INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL I V VP+ VIGDP R +Q+ITNLVGN+IKFT D G+I D
Sbjct: 389 ELTISVRHDVPDNVIGDPLRLQQVITNLVGNAIKFT-DHGNI-----------------D 430
Query: 778 KVLEK---SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
V+EK S N VQ + ++ +T G P D+ +
Sbjct: 431 IVVEKRAISNNKVQIEV-QIRDTGIGIPERDQSR-------------------------- 463
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P G
Sbjct: 464 --------------LFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRG 509
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
STF F ++ +D ++ D+ G+R ++ A+ TR L
Sbjct: 510 STFWFHISLDLNPNALVD----RHATDM--LAGMRLAYVEKNEAAAKSTRDLL------- 556
Query: 955 HVANSMQLACSYLSDTCSTSVLPQ--LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
AN+ L Y D + LPQ ++L V D+E + H L +
Sbjct: 557 --ANT-PLTVVYSPDLAT---LPQAHYDILLFAAPVTDREPLSMRHDQLAR--------- 601
Query: 1013 SRNLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+ L +LA ++ + + LK +G L KP+ + L+ E +L R+
Sbjct: 602 AATLTDCLILALPCHAQINAEMLKKEGASACLLKPVTATRLMPLLLE----HCRLIHARE 657
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK--LTPPHNFDA 1129
P ++ VDDN N ++ L+ V + G AV++ L P FD
Sbjct: 658 LPDGDQSRMPMTVMAVDDNPANLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDI 714
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMP+MDG A IR L + H PI+A+TA +
Sbjct: 715 ILMDIQMPDMDGIHACELIRKLPQQ--------------------QHTPIIAVTAHAMSG 754
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L + R+
Sbjct: 755 QKEKLLSAGMNDYLAKPIEEEKLRALLLRY 784
>gi|406889193|gb|EKD35451.1| hypothetical protein ACD_75C01906G0001, partial [uncultured
bacterium]
Length = 770
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 186/613 (30%), Positives = 288/613 (46%), Gaps = 123/613 (20%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
I +++N + K AEAA+ AKS FLA +SHEIRTPMN ++GM + + T+L A Q
Sbjct: 264 ITELKNYESNLHIAKEAAEAANTAKSDFLARMSHEIRTPMNAIIGMTHLALQTDLTAKQR 323
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY + AH S L+ +IND+LD +KIE+G++E E + F L +VL+ + ++F+ KA +K I
Sbjct: 324 DYIKKAHGSAISLLDIINDILDFSKIEAGKMELENIDFSLDEVLEQLSNVFAMKAAEKNI 383
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL I+V VP + GDP R RQI+ NL GN++KFTQ G + +S++ + K+ ++
Sbjct: 384 ELLIHVDPDVPTFLRGDPLRLRQILINLTGNALKFTQ-AGEVVISINQLESDGQKIRLQF 442
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
V + + + + K++N+ F D + T
Sbjct: 443 AVADTGIGMSETQLAKLFNS---------------FSQADGSTT---------------- 471
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
R YGGTG+GL I + LV +M GEI S+ +GSTF
Sbjct: 472 ------------------------RKYGGTGLGLVICKRLVNMMQGEICVESQLDSGSTF 507
Query: 898 SFTVTFTEGERNSLD----PKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
F+ F+ R+ + P W Q GLR L++DD + + RY L+ M+
Sbjct: 508 HFSALFSTSSRSLKEEFPIPDWMQ---------GLRTLIVDDSVVSRRILRYALESFSMS 558
Query: 954 VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
+ ANS + A + ++D + + L+L+D ++ +G+ G+E S
Sbjct: 559 IATANSGEEAIAAVADAPADN---PYRLILMDMEM----VGM------------DGIEAS 599
Query: 1014 RNL---------PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDP 1060
R + PKI ++ E E GI L KP+ + L + CF
Sbjct: 600 RQILADAPADRCPKIIMVTAYGQEKVAKEAVYAGIQGFLVKPVSKAALFDAIMECFGFVS 659
Query: 1061 ESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
+ L + G ++L+++DN +N++VA L++ VT D G V
Sbjct: 660 PRQACTPHDQSALELTRPIWGSKVLLIEDNAINQQVATEYLEQACIQVTVADNGAKGV-A 718
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
L +FD MD+QMPEMDG+ AT IR G V L PI+
Sbjct: 719 LAESGDFDLVLMDIQMPEMDGYTATRLIRE------------------HGKVTL---PII 757
Query: 1181 AMTADVIQASNEQ 1193
AMTA+ + E+
Sbjct: 758 AMTANAMAGDREK 770
>gi|429116659|ref|ZP_19177577.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter sakazakii
701]
gi|449307057|ref|YP_007439413.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii SP291]
gi|426319788|emb|CCK03690.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter sakazakii
701]
gi|449097090|gb|AGE85124.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii SP291]
Length = 919
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 198/630 (31%), Positives = 296/630 (46%), Gaps = 122/630 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+S+INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL I V VP+ VIGDP R +Q+ITNLVGN+IKFT D G+I D
Sbjct: 389 ELTISVRHDVPDNVIGDPLRLQQVITNLVGNAIKFT-DHGNI-----------------D 430
Query: 778 KVLEK---SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
V+EK S N VQ + ++ +T G P D+ +
Sbjct: 431 IVVEKRAISNNKVQIEV-QIRDTGIGIPERDQSR-------------------------- 463
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P G
Sbjct: 464 --------------LFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRG 509
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
STF F ++ +D ++ D+ G+R ++ A+ TR L
Sbjct: 510 STFWFHISLDLNPNALVD----RHATDM--LAGMRLAYVEKNEAAAKSTRDLL------- 556
Query: 955 HVANSMQLACSYLSDTCSTSVLPQ--LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
AN+ L Y D S LPQ ++L V D+E + H L +
Sbjct: 557 --ANT-PLTVVYSPDLAS---LPQAHYDILLYAAPVTDREPLSMRHDQLAR--------- 601
Query: 1013 SRNLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+ +LA ++ + + LK +G L KP+ + L+ E +L R+
Sbjct: 602 AATFTDCLILALPCHAQINAEMLKKEGASACLLKPVTATRLMPLLLE----HCRLIHARE 657
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK--LTPPHNFDA 1129
P ++ VDDN N ++ L+ V + G AV++ L P FD
Sbjct: 658 LPEGDQSRMPMTVMAVDDNPANLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDI 714
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMP+MDG A IR L + H PI+A+TA +
Sbjct: 715 ILMDIQMPDMDGIHACELIRKLPQQ--------------------QHTPIIAVTAHAMSG 754
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L + R+
Sbjct: 755 QKEKLLSAGMNDYLAKPIEEEKLRAMLLRY 784
>gi|429120378|ref|ZP_19181055.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter sakazakii
680]
gi|426325121|emb|CCK11792.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter sakazakii
680]
Length = 919
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 198/630 (31%), Positives = 294/630 (46%), Gaps = 122/630 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+S+INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL I V VP+ VIGDP R +Q+ITNLVGN+IKFT D G+I D
Sbjct: 389 ELTISVRHDVPDNVIGDPLRLQQVITNLVGNAIKFT-DHGNI-----------------D 430
Query: 778 KVLEK---SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
V+EK S N VQ + ++ +T G P D+ +
Sbjct: 431 IVVEKRAISNNKVQIEV-QIRDTGIGIPERDQSR-------------------------- 463
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P G
Sbjct: 464 --------------LFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRG 509
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
STF F ++ +D ++ D+ G+R ++ A+ TR L
Sbjct: 510 STFWFHISLDLNPNALVD----RHATDM--LAGMRLAYVEKNEAAAKSTRDLL------- 556
Query: 955 HVANSMQLACSYLSDTCSTSVLPQ--LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
AN+ L Y D S LPQ ++L V D+E R L
Sbjct: 557 --ANT-PLTVVYSPDLAS---LPQAHYDILLYAAPVTDRE---------PLSMRHDQLAR 601
Query: 1013 SRNLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+ +LA ++ + + LK +G L KP+ + L+ E +L R+
Sbjct: 602 AATFTDCLILALPCHAQINAEMLKKEGASACLLKPVTATRLMPLLLE----HCRLIHARE 657
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK--LTPPHNFDA 1129
P ++ VDDN N ++ L+ V + G AV++ L P FD
Sbjct: 658 LPEGDQSRMPMTVMAVDDNPANLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDI 714
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMP+MDG A IR L + H PI+A+TA +
Sbjct: 715 ILMDIQMPDMDGIHACELIRQLPQQ--------------------QHTPIIAVTAHAMSG 754
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L + R+
Sbjct: 755 QKEKLLSAGMNDYLAKPIEEEKLRAMLLRY 784
>gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1349
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 183/613 (29%), Positives = 286/613 (46%), Gaps = 98/613 (15%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
E + A AA+ AK +FLA +SHEIRTPMNG++GM +L DT L+ Q D QT +
Sbjct: 684 EEALRYAAVERAANKAKGEFLANMSHEIRTPMNGIIGMASLLEDTPLNNEQKDLLQTISS 743
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
S + L+ +IND+LD +KIE+G+L+ E + F +++V +L + A QKG+++ +S
Sbjct: 744 SAESLLRIINDILDYSKIEAGKLDLERIEFDPRSTVEDVTALMAKTAEQKGLQITSLISH 803
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLN 785
+VP V+GDPGR RQ++ NL GN+IKFT KG + V + ++ R ++ ++++ +
Sbjct: 804 KVPSKVVGDPGRLRQVLMNLTGNAIKFTS-KGEVIVRALVDEEDRGGATLRFEIIDTGIG 862
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
Q + +Y E+F D + T
Sbjct: 863 VPQSRLSSLY---------------ESFTQADPSTT------------------------ 883
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905
R YGGTG+GL+IS+ L LMGG+IG S+ G GS F FTV
Sbjct: 884 ----------------RRYGGTGLGLTISKQLCRLMGGKIGAESKEGEGSLFWFTVKMER 927
Query: 906 GERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
+ P P +G R L+ D + I + V A S +
Sbjct: 928 PRNMDVAP------PAPVSLQGKRILLADARHINRMALTEMFRMWRCQVEHAASGKKCLE 981
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
L +T + ++ID + D E G+ L ++ + S N ++ L A
Sbjct: 982 LLRQ--ATEQGREFDCLIIDYSLADME-GIELGNIILH-------DPSLNHNQLILAAPP 1031
Query: 1026 ISETDRDELKSDGIVTLLTKPLRLS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKG 1081
+ +L+ G LTKP R S +L+ + E + + RK + L++
Sbjct: 1032 GMLGEGGKLRGIGFAGYLTKPFRHSQLKDMLLAVLAK--EDKAQAGESRKMVTRHTLMEN 1089
Query: 1082 KQ--ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
+ +L+V+D MVN++VA ++ G V D G+ ++ FD FMD+QMP M
Sbjct: 1090 SKLRVLLVEDQMVNQKVAVKIIQNMGHGVVVADNGQEGLEAFK-NGAFDIVFMDVQMPVM 1148
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG AT IR LE+E N +PI+A TA ++ E+ + GM
Sbjct: 1149 DGLAATAAIRKLESEENRA-----------------RIPIIAFTAHAMEGDKERFLSAGM 1191
Query: 1200 DDYVSKPFEDEQL 1212
DDY++KP + + L
Sbjct: 1192 DDYLTKPVKKDAL 1204
>gi|254424298|ref|ZP_05038016.1| hypothetical protein S7335_4457 [Synechococcus sp. PCC 7335]
gi|196191787|gb|EDX86751.1| hypothetical protein S7335_4457 [Synechococcus sp. PCC 7335]
Length = 926
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 187/608 (30%), Positives = 296/608 (48%), Gaps = 61/608 (10%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
+ +A A +S FL TVSHEIRTP+N ++ + +ML +T LD Q +YA++ H+S + L+
Sbjct: 365 RLQANALLQVRSAFLNTVSHEIRTPLNAIVNLSEMLQETPLDNRQREYAESLHSSSQTLM 424
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+LINDVLD +KIESG+L P +L + ++ + L + +A K IEL ++ VP ++
Sbjct: 425 TLINDVLDFSKIESGQLLIGDYPVNLVETIERSIELLAPRAALKNIELVYAIAPNVPALI 484
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHK- 790
DP R +QI++NL+ N++KFT G + V V + +S+ + + L SV+ K
Sbjct: 485 RSDPVRLQQILSNLLSNAVKFTA-VGEVSVRVRASPSHQSR---SHTLWGRLLASVRSKL 540
Query: 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850
D + W W + + + G +L V+DTG GIP +F
Sbjct: 541 PDWI------------WPHWLRANYAERSRPDQ--GLYELCFEVKDTGTGIPAARIPHLF 586
Query: 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNS 910
PF Q D ST++ YGGTG+GLSIS+ L+ MGG+I S GS F FT +
Sbjct: 587 RPFSQGDISTAQMYGGTGLGLSISKRLIRRMGGDIWAKSTLRKGSQFFFTFDAQIAQATL 646
Query: 911 LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDT 970
P + + RG R LV+D R E LQ + + +A S+ A +++
Sbjct: 647 PPPNY------LIGLRGTRLLVVDANPTRREQLARTLQTIGILTLLAESLAEARPLMNNR 700
Query: 971 CSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
+ + L+L + + E ++ + R G R LP IF+ A S+
Sbjct: 701 LTLA-----GLILDETAISTAEASQAINEL----RHLSG---DRQLPAIFMSALK-SDLG 747
Query: 1031 RDELKSDGIVTLLTKPLRLSVLIGCFQ--EDPESSKKLQQKRKKPSLGHLLKGKQILVVD 1088
D + V +L KP++ S L + + P+ + +P+ +ILV +
Sbjct: 748 SDLGAALDDVVILWKPVKQSALYQALRSIQSPDLKAAPKTLVSRPTSLLSRTTLKILVAE 807
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQI 1148
DN N++VA L+ G V+ G + L +D MD++MPEMDG +AT +I
Sbjct: 808 DNRTNQKVALRLLELLGYRADVVNTGIEVLTALE-HQRYDVILMDMRMPEMDGVEATQRI 866
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
RH+ + W I+AMTA+ + + E C+ GMDDY+ KP +
Sbjct: 867 RHMPHHKET-----------------W---IIAMTANTMDSDRELCLSVGMDDYLCKPIK 906
Query: 1209 DEQLYTAV 1216
+ L A+
Sbjct: 907 RDALELAL 914
>gi|428148608|ref|ZP_18996471.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella pneumoniae
subsp. pneumoniae ST512-K30BO]
gi|427541449|emb|CCM92609.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella pneumoniae
subsp. pneumoniae ST512-K30BO]
Length = 916
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 190/629 (30%), Positives = 298/629 (47%), Gaps = 121/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +QI+TNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTE-HGNIDVLVEQRAISNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++++T G P D+ +
Sbjct: 447 --------------IQIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAV 954
F ++ L+P +PD GL R ++ + A+ T LEM
Sbjct: 513 WFHISL------DLNPNA---IPDTLNTDGLVGKRLAYVEANATAAQCT------LEMLA 557
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ L Y S T S+ Q ++L+ V +++ +++ +S
Sbjct: 558 ----ATPLEVIY-SPTFSSLAEAQYDILLVGIPVSMRDLS------PHREKLAKACAMSD 606
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE--SSKKLQQ--KR 1070
N + L ++ + LK DG+ L KPL + L+ +S L Q
Sbjct: 607 N---VLLALPCNAQVSAEALKRDGVAACLLKPLTTTRLLPALVATSHALASAPLMQIDSH 663
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K P ++ VDDN N ++ L V D G+ AVDK D
Sbjct: 664 KLP--------MTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK-AKQLQMDLI 714
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A I HL + P++A+TA ++
Sbjct: 715 LMDIQMPDMDGIRACELIHHLSHH--------------------QQTPVIAVTAHALEGQ 754
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L+ + R+
Sbjct: 755 REKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|119357937|ref|YP_912581.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
266]
gi|119355286|gb|ABL66157.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
266]
Length = 985
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 195/627 (31%), Positives = 299/627 (47%), Gaps = 114/627 (18%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
E+ A A+ AKSQFLA +SHE+RTPMNGV+GM +L+DT LD Q Y +T +SGK+
Sbjct: 316 EMARAASKANEAKSQFLANMSHEVRTPMNGVIGMSDLLLDTSLDPEQRKYVETIISSGKN 375
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+S+IND+LD +KIE+ RL+ + V F L ++L++V + +A QKG+EL + +P
Sbjct: 376 LLSIINDILDFSKIEANRLDLDVVDFDLLELLEDVCGILGLQAQQKGLELTLVTGSFLPR 435
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
+ GD R RQI+ NLVGN++KFT G + V ++ S+V ++
Sbjct: 436 FLRGDQARIRQILVNLVGNAVKFTH-SGEVVVCAMAQEERDSQVTIR------------- 481
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
LLV G+ P E +
Sbjct: 482 ----------------------------------------LLVRDTGIGI--PREMMKAV 499
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
F PF+QAD ST R YGGTG+GL+IS L + MG I S G GS F F V + ++
Sbjct: 500 FEPFIQADGSTRRKYGGTGLGLAISNQLAKKMGSTIILESTNGEGSVFWFDVVLEKQCQS 559
Query: 910 SLDPKWQQYVPDV-SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY-- 966
S + +P+ + G R LV++ R R+ L+ V S + C+
Sbjct: 560 S------ELLPESGAGLAGKRVLVVN----RNASMRFMLK------GVLESCSVDCTVFG 603
Query: 967 -----LSDTCSTSV----LPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
L+ S+SV +P + ++D +V + H + + QR G + P
Sbjct: 604 GIEEALAAVTSSSVHLESVPVWNVAILDTNVAE-------HSLEEFQRLIGTITEVHRCP 656
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED-PESSKKLQQKRKKPSLG 1076
I L++ E + +L S G+ LL KP+R + ++ + S + Q+ K+ G
Sbjct: 657 IILLVSFGQYE-EMKKLFSTGVFRLLLKPVRQAEVVVAVVDALNNESAEYQEPVKQVGAG 715
Query: 1077 ---HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
+ IL+V+D+ VN++VA L+K G V G+AA+D + +D MD
Sbjct: 716 WQDSETETYHILLVEDSPVNQQVAVAMLRKIGYSPDVVASGKAAIDAMR-CKVYDLVLMD 774
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
QMPEMDG++AT IR ++ G +P++AMTA + E+
Sbjct: 775 CQMPEMDGYEATRIIR------TDRTLCGTPD-----------IPVVAMTAHAMIGDREK 817
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARFF 1220
C+ GMDDY+ KP L + ++
Sbjct: 818 CLSAGMDDYLPKPVCKSDLNAVLLKYL 844
>gi|424800861|ref|ZP_18226403.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter sakazakii
696]
gi|423236582|emb|CCK08273.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter sakazakii
696]
Length = 984
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 198/630 (31%), Positives = 296/630 (46%), Gaps = 122/630 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+S+INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL I V VP+ VIGDP R +Q+ITNLVGN+IKFT D G+I D
Sbjct: 389 ELTISVRHDVPDNVIGDPLRLQQVITNLVGNAIKFT-DHGNI-----------------D 430
Query: 778 KVLEK---SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
V+EK S N VQ + ++ +T G P D+ +
Sbjct: 431 IVVEKRAISNNKVQIEV-QIRDTGIGIPERDQSR-------------------------- 463
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P G
Sbjct: 464 --------------LFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRG 509
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
STF F ++ +D ++ D+ G+R ++ A+ TR L
Sbjct: 510 STFWFHISLDLNPNALVD----RHATDM--LAGMRLAYVEKNEAAAKSTRDLL------- 556
Query: 955 HVANSMQLACSYLSDTCSTSVLPQ--LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
AN+ L Y D S LPQ ++L V D+E + H L +
Sbjct: 557 --ANT-PLTVVYSPDLAS---LPQAHYDILLYAAPVTDREPLSMRHDQLAR--------- 601
Query: 1013 SRNLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+ +LA ++ + + LK +G L KP+ + L+ E +L R+
Sbjct: 602 AATFTDCLILALPCHAQINAEMLKKEGASACLLKPVTATRLMPLLLE----HCRLIHARE 657
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK--LTPPHNFDA 1129
P ++ VDDN N ++ L+ V + G AV++ L P FD
Sbjct: 658 LPEGDQSRMPMTVMAVDDNPANLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDI 714
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMP+MDG A IR L + H PI+A+TA +
Sbjct: 715 ILMDIQMPDMDGIHACELIRKLPQQ--------------------QHTPIIAVTAHAMSG 754
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L + R+
Sbjct: 755 QKEKLLSAGMNDYLAKPIEEEKLRAMLLRY 784
>gi|330012191|ref|ZP_08307324.1| signal transduction histidine-protein kinase BarA [Klebsiella sp. MS
92-3]
gi|328533893|gb|EGF60561.1| signal transduction histidine-protein kinase BarA [Klebsiella sp. MS
92-3]
Length = 916
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 190/629 (30%), Positives = 298/629 (47%), Gaps = 121/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +QI+TNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTE-HGNIDVLVEQRAISNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++++T G P D+ +
Sbjct: 447 --------------IQIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAV 954
F ++ L+P +PD GL R ++ + A+ T LEM
Sbjct: 513 WFHISL------DLNPNA---IPDTLNTDGLVGKRLAYVEANATAAQCT------LEMLA 557
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ L Y S T S+ Q ++L+ V +++ +++ +S
Sbjct: 558 ----ATPLEVIY-SPTFSSLAEAQYDILLVGIPVSMRDLS------PHREKLAKACAMSD 606
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE--SSKKLQQ--KR 1070
N + L ++ + LK DG+ L KPL + L+ +S L Q
Sbjct: 607 N---VLLALPCHAQVSAEALKRDGVAACLLKPLTTTRLLPALVATSHALASAPLMQIDSH 663
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K P ++ VDDN N ++ L V D G+ AVDK D
Sbjct: 664 KLP--------MTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK-AKQLQMDLI 714
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A I HL + P++A+TA ++
Sbjct: 715 LMDIQMPDMDGIRACELIHHLSHH--------------------QQTPVIAVTAHALEGQ 754
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L+ + R+
Sbjct: 755 REKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
Length = 1547
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 193/604 (31%), Positives = 284/604 (47%), Gaps = 108/604 (17%)
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S FLA +SHEIRTP+NGV+GML +L T+L Q A +S L+++IND+LD +K
Sbjct: 869 SDFLAMMSHEIRTPLNGVMGMLSLLNRTQLSDEQRRKLTIASHSSNTLLNIINDILDFSK 928
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
+++G++E E + F+L L+ + +A +K +EL + +D +V GDPGR RQ++
Sbjct: 929 VDAGKIELESIEFNLIAQLEEFSESMAMRAQEKHVELILDTTDINTPMVCGDPGRIRQVL 988
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
NLVGN+IKFT + G + V L V K D ++
Sbjct: 989 ANLVGNAIKFTAE-GEVLVRCAL---------------------VPQKDDLIFQ------ 1020
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
V+V DTG+GI + +F PF Q D+ST+R
Sbjct: 1021 -----------------------------VSVVDTGIGIENDKLDELFNPFTQVDASTTR 1051
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922
YGGTG+GL+I + L LMGG+I SE G+GSTF F V E QQ V
Sbjct: 1052 EYGGTGLGLAICKKLCVLMGGDIAAHSELGSGSTFDFHVLLQACE--------QQVAVPV 1103
Query: 923 SEFRGLRALVIDD-KSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
L+I+D KS+R V R+ L V A + D + + LP +
Sbjct: 1104 MNLENKSVLLIEDNKSVRELVYRW-LDSWGANVFAAEDGAQGLARCQDLKALNNLPD--V 1160
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVT 1041
VLID+ + D+ + ML G+E +LP + L + I+E + + G
Sbjct: 1161 VLIDQYLPDQTGCDLAKQML-------GIEGCADLPVLIL--SRIAEGELQKFCDAGARG 1211
Query: 1042 LLTKPLRLSVLIGCFQEDPESSKKL----QQKRKKPSLG---HLLKGK---QILVVDDNM 1091
+ KPL + L+ + E L Q K + G L G+ ++L+V+DN
Sbjct: 1212 YVAKPLTRAGLVESVKVLLEGGSTLRGWTQIKEHSQAAGEGDELDSGQVNGRVLLVEDNP 1271
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD---ACFMDLQMPEMDGFQATWQI 1148
VN+ VA L G +VT G A+D L +D MD QMPEMDG++ T I
Sbjct: 1272 VNQDVARMMLDDVGVVVTTAGNGVEALDALQSAQQWDLYSLVLMDCQMPEMDGYETTRSI 1331
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
R + E++ +PI+AMTA+ ++ E+C GMDDY+SKP +
Sbjct: 1332 R------------AGKAGEIYKK-----IPIIAMTANAMKGDKERCFAAGMDDYISKPID 1374
Query: 1209 DEQL 1212
+ L
Sbjct: 1375 PQVL 1378
>gi|449047540|ref|ZP_21730833.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae hvKP1]
gi|448877405|gb|EMB12371.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae hvKP1]
Length = 916
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 190/629 (30%), Positives = 298/629 (47%), Gaps = 121/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +QI+TNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTE-HGNIDVLVEQRAISNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++++T G P D+ +
Sbjct: 447 --------------IQIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAV 954
F ++ L+P +PD GL R ++ + A+ T LEM
Sbjct: 513 WFHISL------DLNPNA---IPDTLNTDGLVGKRLAYVEANATAAQCT------LEMLA 557
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ L Y S T S+ Q ++L+ V +++ +++ +S
Sbjct: 558 ----ATPLEVIY-SPTFSSLAEAQYDILLVGIPVSMRDLS------PHREKLAKACAMSD 606
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE--SSKKLQQ--KR 1070
N + L ++ + LK DG+ L KPL + L+ +S L Q
Sbjct: 607 N---VLLALPCHAQVSAEALKRDGVAACLLKPLTTTRLLPALVATSHALASAPLMQIDSH 663
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K P ++ VDDN N ++ L V D G+ AVDK D
Sbjct: 664 KLP--------MTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK-AKQLQMDLI 714
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A I HL + P++A+TA ++
Sbjct: 715 LMDIQMPDMDGIRACELIHHLSHH--------------------QQTPVIAVTAHALEGQ 754
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L+ + R+
Sbjct: 755 REKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|429097710|ref|ZP_19159816.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
dublinensis 582]
gi|426284050|emb|CCJ85929.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
dublinensis 582]
Length = 670
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 196/630 (31%), Positives = 296/630 (46%), Gaps = 122/630 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L Q
Sbjct: 41 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQR 100
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+S+INDVLD +K+E+G+L E +PF L + LD V++L + A+ KG+
Sbjct: 101 DHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRNTLDEVVTLLAHSAHDKGL 160
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + V VP+ VIGDP R +Q+ITNLVGN+IKFT D G+I D
Sbjct: 161 ELTVSVRHDVPDNVIGDPLRLQQVITNLVGNAIKFT-DHGNI-----------------D 202
Query: 778 KVLEK---SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
V+EK S N VQ + ++ +T G P D+ +
Sbjct: 203 IVVEKRAISNNKVQIEV-QIRDTGIGIPERDQSR-------------------------- 235
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P G
Sbjct: 236 --------------LFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRG 281
Query: 895 STFSFTVTFTEGERNSLDPKW--QQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM 952
STF F ++ L+P ++ D+ G+R ++ A+ TR L +
Sbjct: 282 STFWFHISL------DLNPNALVDRHATDM--LAGMRLAYVEKNEAAAKSTRDLLDNTPL 333
Query: 953 AVHVANSMQLACSYLSDTCSTSVLPQ--LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL 1010
V S +LA LPQ ++L V D+E + H L +
Sbjct: 334 T--VVYSPELA-----------TLPQAHYDILLYAAPVTDREPLTMRHDQLAR------- 373
Query: 1011 EISRNLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQK 1069
+ L +LA ++ + + LK +G L KP+ + L+ E +
Sbjct: 374 --AATLTDCLILALPCHAQINAEMLKKEGASACLLKPVTATRLLPLLLE----HCRQIHA 427
Query: 1070 RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
R+ P ++ VDDN N ++ L+ V D G AV++ T FD
Sbjct: 428 RELPEGSQGKLAMTVMAVDDNPANLKLIGALLEDIVQHVVLCDSGHQAVERAT-LQPFDI 486
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMP+MDG A IR L + H PI+A+TA +
Sbjct: 487 ILMDIQMPDMDGIHACELIRKLPQQ--------------------QHTPIIAVTAHAMSG 526
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L + R+
Sbjct: 527 QKEKLLSAGMNDYLAKPIEEEKLRALLLRY 556
>gi|152971650|ref|YP_001336759.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896247|ref|YP_002920983.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|378980364|ref|YP_005228505.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|402779252|ref|YP_006634798.1| BarA sensory histidine kinase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419972587|ref|ZP_14488015.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419980265|ref|ZP_14495551.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419983491|ref|ZP_14498641.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991224|ref|ZP_14506191.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997353|ref|ZP_14512150.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420001152|ref|ZP_14515809.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420008188|ref|ZP_14522679.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420013715|ref|ZP_14528025.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420019361|ref|ZP_14533554.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024852|ref|ZP_14538863.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420029839|ref|ZP_14543667.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420035568|ref|ZP_14549231.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420042434|ref|ZP_14555927.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420048142|ref|ZP_14561457.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420053213|ref|ZP_14566392.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420058687|ref|ZP_14571698.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420073224|ref|ZP_14585853.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420075588|ref|ZP_14588063.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420081440|ref|ZP_14593748.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421909840|ref|ZP_16339643.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella pneumoniae
subsp. pneumoniae ST258-K26BO]
gi|421914520|ref|ZP_16344167.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella pneumoniae
subsp. pneumoniae ST258-K28BO]
gi|424932058|ref|ZP_18350430.1| Hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425075192|ref|ZP_18478295.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425082934|ref|ZP_18486031.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425085828|ref|ZP_18488921.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425093032|ref|ZP_18496116.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428932773|ref|ZP_19006343.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae JHCK1]
gi|428940431|ref|ZP_19013515.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae VA360]
gi|150956499|gb|ABR78529.1| hybrid sensory histidine kinase in two-component regulatory system
with UvrY [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238548565|dbj|BAH64916.1| hybrid sensory histidine kinase in two-component regulatory system
with UvrY [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|364519775|gb|AEW62903.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397346576|gb|EJJ39690.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397350996|gb|EJJ44082.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397355123|gb|EJJ48133.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397363146|gb|EJJ55789.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397364573|gb|EJJ57203.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397372677|gb|EJJ65161.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397379798|gb|EJJ71989.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397383749|gb|EJJ75883.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397389053|gb|EJJ81003.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397398155|gb|EJJ89820.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397402298|gb|EJJ93901.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397407585|gb|EJJ98970.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397416086|gb|EJK07265.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397416236|gb|EJK07411.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397424630|gb|EJK15528.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397436525|gb|EJK27111.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397438200|gb|EJK28718.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397448087|gb|EJK38266.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397453205|gb|EJK43267.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402540194|gb|AFQ64343.1| BarA sensory histidine kinase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405595395|gb|EKB68785.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405599253|gb|EKB72429.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405606337|gb|EKB79329.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405611374|gb|EKB84142.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|407806245|gb|EKF77496.1| Hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410116240|emb|CCM82268.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella pneumoniae
subsp. pneumoniae ST258-K26BO]
gi|410123276|emb|CCM86792.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella pneumoniae
subsp. pneumoniae ST258-K28BO]
gi|426302308|gb|EKV64515.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae VA360]
gi|426306762|gb|EKV68858.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae JHCK1]
Length = 916
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 190/629 (30%), Positives = 298/629 (47%), Gaps = 121/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +QI+TNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTE-HGNIDVLVEQRAISNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++++T G P D+ +
Sbjct: 447 --------------IQIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAV 954
F ++ L+P +PD GL R ++ + A+ T LEM
Sbjct: 513 WFHISL------DLNPNA---IPDTLNTDGLVGKRLAYVEANATAAQCT------LEMLA 557
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ L Y S T S+ Q ++L+ V +++ +++ +S
Sbjct: 558 ----ATPLEVIY-SPTFSSLAEAQYDILLVGIPVSMRDLS------PHREKLAKACAMSD 606
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE--SSKKLQQ--KR 1070
N + L ++ + LK DG+ L KPL + L+ +S L Q
Sbjct: 607 N---VLLALPCHAQVSAEALKRDGVAACLLKPLTTTRLLPALVATSHALASAPLMQIDSH 663
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K P ++ VDDN N ++ L V D G+ AVDK D
Sbjct: 664 KLP--------MTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK-AKQLQMDLI 714
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A I HL + P++A+TA ++
Sbjct: 715 LMDIQMPDMDGIRACELIHHLSHH--------------------QQTPVIAVTAHALEGQ 754
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L+ + R+
Sbjct: 755 REKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|365140200|ref|ZP_09346255.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
4_1_44FAA]
gi|363653516|gb|EHL92465.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
4_1_44FAA]
Length = 916
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 190/629 (30%), Positives = 298/629 (47%), Gaps = 121/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +QI+TNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTE-HGNIDVLVEQRAISNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++++T G P D+ +
Sbjct: 447 --------------IQIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAV 954
F ++ L+P +PD GL R ++ + A+ T LEM
Sbjct: 513 WFHISL------DLNPNA---IPDTLNTDGLVGKRLAYVEANATAAQCT------LEMLA 557
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ L Y S T S+ Q ++L+ V +++ +++ +S
Sbjct: 558 ----ATPLEVIY-SPTFSSLAEAQYDILLVGIPVSMRDLS------PHREKLAKACAMSD 606
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE--SSKKLQQ--KR 1070
N + L ++ + LK DG+ L KPL + L+ +S L Q
Sbjct: 607 N---VLLALPCHAQVSAEALKRDGVAACLLKPLTTTRLLPALVATSHALASAPLMQIDSH 663
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K P ++ VDDN N ++ L V D G+ AVDK D
Sbjct: 664 KLP--------MTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK-AKQLQMDLI 714
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A I HL + P++A+TA ++
Sbjct: 715 LMDIQMPDMDGIRACELIHHLSHH--------------------QQTPVIAVTAHALEGQ 754
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L+ + R+
Sbjct: 755 REKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|429094957|ref|ZP_19157463.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
dublinensis 1210]
gi|426739907|emb|CCJ83576.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
dublinensis 1210]
Length = 919
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 195/628 (31%), Positives = 291/628 (46%), Gaps = 118/628 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+S+INDVLD +K+E+G+L E +PF L + LD V++L + A+ KG+
Sbjct: 329 DHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRNTLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + V VP+ VIGDP R +Q+ITNLVGN+IKFT D G+I D
Sbjct: 389 ELTVSVRHDVPDNVIGDPLRLQQVITNLVGNAIKFT-DHGNI-----------------D 430
Query: 778 KVLEK---SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
V+EK S N VQ + ++ +T G P D+ +
Sbjct: 431 IVVEKRAISNNKVQIEV-QIRDTGIGIPERDQSR-------------------------- 463
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P G
Sbjct: 464 --------------LFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRG 509
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
STF F ++ L+P G+R ++ A+ TR L +
Sbjct: 510 STFWFHISL------DLNPNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLDNTPLT- 562
Query: 955 HVANSMQLACSYLSDTCSTSVLPQ--LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
V S +LA LPQ ++L V D+E + H L +
Sbjct: 563 -VVYSPELAT-----------LPQAHYDILLYAAPVTDREPLTMRHDQLAR--------- 601
Query: 1013 SRNLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+ L +LA ++ + + LK +G L KP+ + L+ E R+
Sbjct: 602 AATLTDCLILALPCHAQINAEMLKKEGASACLLKPVTATRLLPLLLEHCRQI----HARE 657
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
P ++ VDDN N ++ L+ V D G AV++ T FD
Sbjct: 658 LPEGSQGKLAMTVMAVDDNPANLKLIGALLEDIVQHVVLCDSGHQAVERAT-LQPFDIIL 716
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
MD+QMP+MDG A IR L + H PI+A+TA +
Sbjct: 717 MDIQMPDMDGIHACELIRKLPQQ--------------------QHTPIIAVTAHAMSGQK 756
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L + R+
Sbjct: 757 EKLLSAGMNDYLAKPIEEEKLRALLLRY 784
>gi|421504067|ref|ZP_15951011.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina DLHK]
gi|400345168|gb|EJO93534.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina DLHK]
Length = 907
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 196/659 (29%), Positives = 305/659 (46%), Gaps = 122/659 (18%)
Query: 572 TAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSH 631
TA+ + + +ITL +G +RI ++ + + +A AKS+FLA +SH
Sbjct: 356 TAVKIGVTIELITLSIG-----LADRINLLKEEGFQSRRAAEQAAFESQAKSRFLAKMSH 410
Query: 632 EIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691
EIRTP+NGVLGMLQ+L +T LD +Q Y T +SG L+++IND+LD A+IESG+L E
Sbjct: 411 EIRTPLNGVLGMLQLLRETPLDRSQRFYVDTISSSGSSLMAVINDILDYARIESGKLSLE 470
Query: 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIK 751
+ F L D++ LSLF+ +A K + L + + VP + GDP R +Q++ NL+ N++K
Sbjct: 471 QIEFDLEDMISETLSLFTGQALDKRLRLYVSLEGGVPRRIQGDPTRLKQVLMNLLSNALK 530
Query: 752 FTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWE 811
FT + GH+ VSV D + + V + + + K++ E
Sbjct: 531 FTAE-GHVAVSVSRRSDSHGQPHLVFAVSDSGIGISEQALAKLF---------------E 574
Query: 812 NFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGL 871
+F D++ T+R YGG+G+GL
Sbjct: 575 SFAQGDSS----------------------------------------TTRRYGGSGLGL 594
Query: 872 SISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD--VSEFRGLR 929
+IS+ LVE+MGG I S PG G+ F+F + E PD G
Sbjct: 595 AISKELVEMMGGRIEVQSTPGQGTRFAFDIPLLEAPE----------APDDLARLLAGRT 644
Query: 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVW 989
AL+ + + L R M + + YL D + +L +A + W
Sbjct: 645 ALLASLDGLGLDALSRLLGRWGMRTERCQTPERLQDYLEDFTAPPLLVLMAPWPGSVNHW 704
Query: 990 DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGI-VTLLTKPLR 1048
+ L ML+ Q+R +L E + +S G+ + L +PL
Sbjct: 705 LES----LRPMLQLQQR--------------VLLVCPPEACQQLPESKGLRLQHLAQPLA 746
Query: 1049 LS----VLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQ--ILVVDDNMVNRRVAEGALK 1102
++ L G ++E L ++ + KG ILV +DN VN+ V +G LK
Sbjct: 747 INALRQALTGLYEEPRAQVHHLVREVRSD------KGDAPCILVAEDNPVNQLVVQGFLK 800
Query: 1103 KHGAIVTCVDCGRAAVDKLT-PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161
K G V V G+AAVD+ + P MD +MP MDGF+AT QIR LE+ ++Q+ +
Sbjct: 801 KRGYSVRLVTDGQAAVDEYSRDPAAVQLILMDCEMPVMDGFEATRQIRRLEH--SQQLGA 858
Query: 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
VPI+A+TA ++ + M GMDD++ KP + + LY+ + RF
Sbjct: 859 ---------------VPIIALTAHILDEHRQHGMDAGMDDFLGKPLDSKLLYSTLERFL 902
>gi|389839777|ref|YP_006341861.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ES15]
gi|387850253|gb|AFJ98350.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ES15]
Length = 919
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 198/630 (31%), Positives = 294/630 (46%), Gaps = 122/630 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+S+INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL I V VP+ VIGDP R +Q+ITNLVGN+IKFT D G+I D
Sbjct: 389 ELTISVRHDVPDNVIGDPLRLQQVITNLVGNAIKFT-DHGNI-----------------D 430
Query: 778 KVLEK---SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
V+EK S N VQ + ++ +T G P D+ +
Sbjct: 431 IVVEKRAISNNKVQIEV-QIRDTGIGIPERDQSR-------------------------- 463
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P G
Sbjct: 464 --------------LFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRG 509
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
STF F ++ +D ++ D+ G+R ++ A+ TR L
Sbjct: 510 STFWFHISLDLNPNALVD----RHATDM--LAGMRLAYVEKNEAAAKSTRDLL------- 556
Query: 955 HVANSMQLACSYLSDTCSTSVLPQ--LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
AN+ L Y D S LPQ ++L V D+E R L
Sbjct: 557 --ANT-PLTVVYSPDLAS---LPQAHYDILLYAAPVTDRE---------PLSMRHDQLAR 601
Query: 1013 SRNLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+ +LA ++ + + LK +G L KP+ + L+ E +L R+
Sbjct: 602 AATFTDCLILALPCHAQINAEMLKKEGASACLLKPVTATRLMPLLLE----HCRLIHARE 657
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK--LTPPHNFDA 1129
P ++ VDDN N ++ L+ V + G AV++ L P FD
Sbjct: 658 LPEGDQSRMPMTVMAVDDNPANLKLIGALLEDMLQHVVLCESGHQAVERAMLQP---FDI 714
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMP+MDG A IR L + H PI+A+TA +
Sbjct: 715 ILMDIQMPDMDGIHACELIRKLPQQ--------------------QHTPIIAVTAHAMSG 754
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L + R+
Sbjct: 755 QKEKLLSAGMNDYLAKPIEEEKLRAMLLRY 784
>gi|262041527|ref|ZP_06014724.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|259041088|gb|EEW42162.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 916
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 190/629 (30%), Positives = 298/629 (47%), Gaps = 121/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +QI+TNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTE-HGNIDVLVEQRAISNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++++T G P D+ +
Sbjct: 447 --------------IQIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAV 954
F ++ L+P +PD GL R ++ + A+ T LEM
Sbjct: 513 WFHISL------DLNPNA---IPDTLNTDGLVGKRLAYVEANATAAQCT------LEMLA 557
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ L Y S T S+ Q ++L+ V +++ +++ +S
Sbjct: 558 ----ATPLEVIY-SPTFSSLAEAQYDILLVGIPVSMRDLS------PHREKLAKACAMSD 606
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE--SSKKLQQ--KR 1070
N + L ++ + LK DG+ L KPL + L+ +S L Q
Sbjct: 607 N---VLLALPCHAQVSAEALKRDGVAACLLKPLTTTRLLPALVATSHALASAPLMQIDSH 663
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K P ++ VDDN N ++ L V D G+ AVDK D
Sbjct: 664 KLP--------MTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK-AKQLQVDLI 714
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A I HL + P++A+TA ++
Sbjct: 715 LMDIQMPDMDGIRACELIHHLSHH--------------------QQTPVIAVTAHALEGQ 754
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L+ + R+
Sbjct: 755 REKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|398885503|ref|ZP_10640413.1| PAS domain S-box [Pseudomonas sp. GM60]
gi|398192413|gb|EJM79568.1| PAS domain S-box [Pseudomonas sp. GM60]
Length = 1516
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 198/628 (31%), Positives = 308/628 (49%), Gaps = 103/628 (16%)
Query: 594 AINR--IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
INR +Q E + H ++ K +A+ A AKS FLA +SHEIRTPMN VLGMLQ++ +T+
Sbjct: 758 GINRDITSQRELESH-LLYAKEQADTASAAKSSFLANMSHEIRTPMNAVLGMLQLVQNTD 816
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
L+ QLDY A + K L+ L+ND+LD +KIE+G+L+ + PF L ++ ++ + +
Sbjct: 817 LNGRQLDYVTKAQAAAKSLLGLLNDILDYSKIEAGKLQLDVHPFELEPLMRDLAVVLAGN 876
Query: 712 ANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771
QK +E+ + +P +L+G+S++ Q V ++LA
Sbjct: 877 QGQKEVEVMFDLDSNLP--------------NDLIGDSLRLQQ------VLINLA----- 911
Query: 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
+ + T+ G VV S E +N+ +KL
Sbjct: 912 -------------------GNALKFTMEGQIVV----SVEQLMRTENS--------LKLR 940
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
+ V DTG+GI E IF F QA++ST+R +GGTG+GL I + LV LMGGE+ S+
Sbjct: 941 IAVSDTGIGISPEQLQHIFEGFTQAEASTTRRFGGTGLGLVICKRLVSLMGGELQVESQQ 1000
Query: 892 GTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLE 951
G GS F F +T NSL V D S +R LV+DD ++ E+ + L
Sbjct: 1001 GVGSRFWFDITLDVAP-NSLLRSDSSGV-DAS----IRILVVDDNAMAGELLLRTVHALG 1054
Query: 952 -MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL 1010
A HV+ Q A ++ + + +VL+D + D + GL +++QQ G+
Sbjct: 1055 WKADHVSGGTQ-AVEWVKNAQARG--EAYDVVLMDWRMSDMD-GLSAAQLIRQQ--GNGV 1108
Query: 1011 EISRNLPKIFLLATSISE---TDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQ 1067
P + ++ T+ D +E+ V LTKP+ L Q Q
Sbjct: 1109 P-----PPMVIMITAYGREVLADANEMGDAPFVGFLTKPVTPKQLADAVQRALNGKGLPQ 1163
Query: 1068 QKRKKPSLG--HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPH 1125
K ++ L G ++LVV+DNM+NR+VA+ L GA VT + G V ++ +
Sbjct: 1164 SLPSKSTVDRPQRLAGLRLLVVEDNMLNRQVADELLTGEGAQVTLAEGGLEGVSRVMAEN 1223
Query: 1126 -NFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184
+FDA MD+QMP++DG +AT +IR N + A+ +PI+AMTA
Sbjct: 1224 VSFDAVLMDIQMPDIDGLEATRRIRS-----NPRFAA---------------LPIVAMTA 1263
Query: 1185 DVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
+ + C+ GM+++V KP + EQL
Sbjct: 1264 NASSTDRDACLAAGMNEHVGKPIDLEQL 1291
>gi|152987294|ref|YP_001346367.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PA7]
gi|150962452|gb|ABR84477.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PA7]
Length = 1418
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 192/594 (32%), Positives = 280/594 (47%), Gaps = 104/594 (17%)
Query: 628 TVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR 687
+SHEIRTPMN VLGMLQ+ T+L+ Q DY A ++ L+ L+ND+LD +KIE+G+
Sbjct: 771 NMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSAATSLLGLLNDILDYSKIEAGK 830
Query: 688 LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVG 747
L E PF L ++ ++ + S K +E+ + +P V+GD R +QI+ NL G
Sbjct: 831 LLLEMHPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPELPSAVVGDRLRLQQILINLAG 890
Query: 748 NSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRW 807
N++KFT GH+ V SL + H +
Sbjct: 891 NALKFTA-HGHVLV---------------------SLRRLAHDAH--------------- 913
Query: 808 KSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGT 867
R+ L V V DTG+GI E Q RIF F QA++STSR +GGT
Sbjct: 914 -------------------RVGLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGT 954
Query: 868 GIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927
G+GL I + LV+LMGG + S PG+GS F F + L + P V E
Sbjct: 955 GLGLFICKRLVDLMGGRLQVESSPGSGSRFWFDLDLDVARGEPL----RAACPGVGE--P 1008
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
LR LV DD I E+ + L S A + + + + +VL+D
Sbjct: 1009 LRLLVADDNLIAGELLERTVGALGWRADCVGSGSEAVARVQAAMAEG--RRYDVVLMDWR 1066
Query: 988 VWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISE---TDRDELKSDGIVTLLT 1044
+ D + GL +++Q +G L P + ++ T+ D + + V LT
Sbjct: 1067 MPDLD-GLSAAQLIRQL--QGDLP-----PPMVIMITAYGREVLADARDHSAPPFVDFLT 1118
Query: 1045 KP-----LRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
KP L SVL E + + +++P L+G ++LVV+DN +NR+VA
Sbjct: 1119 KPVTPKQLADSVLHALHGEQGAPANPPPRPQERPQ---RLRGVRLLVVEDNALNRQVAAE 1175
Query: 1100 ALKKHGAIVTCVDCGRAAVDK-LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ 1158
L GA V+ D G A V + L FDA MD+QMP++DG +AT +IR
Sbjct: 1176 LLSSEGARVSLADGGLAGVQQVLEAGVPFDAVLMDMQMPDIDGLEATRRIR--------- 1226
Query: 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
A G + +PILAMTA+ + E C+ GMDD+V+KP + E+L
Sbjct: 1227 -ADGRFAG----------LPILAMTANASLSDREACLAAGMDDHVAKPIDKERL 1269
>gi|420065400|ref|ZP_14578206.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397431837|gb|EJK22508.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
Length = 898
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 190/629 (30%), Positives = 298/629 (47%), Gaps = 121/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +QI+TNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTE-HGNIDVLVEQRAISNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++++T G P D+ +
Sbjct: 447 --------------IQIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAV 954
F ++ L+P +PD GL R ++ + A+ T LEM
Sbjct: 513 WFHISL------DLNPNA---IPDTLNTDGLVGKRLAYVEANATAAQCT------LEMLA 557
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ L Y S T S+ Q ++L+ V +++ +++ +S
Sbjct: 558 ----ATPLEVIY-SPTFSSLAEAQYDILLVGIPVSMRDLS------PHREKLAKACAMSD 606
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE--SSKKLQQ--KR 1070
N + L ++ + LK DG+ L KPL + L+ +S L Q
Sbjct: 607 N---VLLALPCHAQVSAEALKRDGVAACLLKPLTTTRLLPALVATSHALASAPLMQIDSH 663
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K P ++ VDDN N ++ L V D G+ AVDK D
Sbjct: 664 KLP--------MTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK-AKQLQMDLI 714
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A I HL + P++A+TA ++
Sbjct: 715 LMDIQMPDMDGIRACELIHHLSHH--------------------QQTPVIAVTAHALEGQ 754
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L+ + R+
Sbjct: 755 REKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|429105970|ref|ZP_19167839.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
malonaticus 681]
gi|426292693|emb|CCJ93952.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
malonaticus 681]
Length = 919
Score = 243 bits (621), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 198/630 (31%), Positives = 297/630 (47%), Gaps = 122/630 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+S+INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRTTLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL I V VP+ VIGDP R +Q+ITNLVGN+IKFT D G+I D
Sbjct: 389 ELTISVRHDVPDNVIGDPLRLQQVITNLVGNAIKFT-DHGNI-----------------D 430
Query: 778 KVLEK---SLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTV 834
V+EK S N VQ + ++ +T G P D+ +
Sbjct: 431 IVVEKRAISNNKVQIEV-QIRDTGIGIPERDQSR-------------------------- 463
Query: 835 EDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P G
Sbjct: 464 --------------LFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRG 509
Query: 895 STFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV 954
STF F ++ +D ++ D+ G+R ++ A+ TR L
Sbjct: 510 STFWFHISLDLNPNALVD----RHATDM--LAGMRLAYVEKNEAAAKSTRDLL------- 556
Query: 955 HVANSMQLACSYLSDTCSTSVLPQ--LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEI 1012
AN+ L Y D + LPQ ++L V D+E + H L +
Sbjct: 557 --ANT-PLTVVYSPDLAT---LPQAHYDILLYAAPVTDREPLSMRHDQLAR--------- 601
Query: 1013 SRNLPKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+ L +LA ++ + + LK +G L KP+ + L+ E +L R+
Sbjct: 602 AATLTDCLILALPCHAQINAEMLKKEGASACLLKPVTATRLMPLLLE----HCRLIHARE 657
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK--LTPPHNFDA 1129
P ++ VDDN N ++ L+ V + G AV++ L P FD
Sbjct: 658 LPEGDQSRMPMTVMAVDDNPANLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDI 714
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMP+MDG A IR L + H PI+A+TA +
Sbjct: 715 ILMDIQMPDMDGIHACELIRKLPQQ--------------------QHTPIIAVTAHAMSG 754
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L + R+
Sbjct: 755 QKEKLLSAGMNDYLAKPIEEEKLRALLLRY 784
>gi|392549462|ref|ZP_10296599.1| GGDEF domain protein [Pseudoalteromonas rubra ATCC 29570]
Length = 1378
Score = 243 bits (621), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 201/679 (29%), Positives = 311/679 (45%), Gaps = 130/679 (19%)
Query: 568 PVPWT--------AINASIGVVVITLLVGHIFHAAINR----IAQVENDYHE-------- 607
P PW AI ++ + + L + A INR + Q+E +
Sbjct: 782 PPPWKTWWAYTLYAIACALLIFTVIYLRTRMQKAEINRQKQFVVQLEEQVSQKTASLKSQ 841
Query: 608 MMELKA---RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAH 664
MEL+A +AE A KS+FLA +SHEIRTPMNGVLGML++L +EL Q A
Sbjct: 842 AMELEAALKKAEQATRLKSEFLANMSHEIRTPMNGVLGMLELLKHSELTPEQEHSVGIAS 901
Query: 665 NSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724
+S L+SLIND+LD +KIE+ +LE EF+ F + + + + + A KG+ L + ++
Sbjct: 902 SSAHSLLSLINDILDFSKIEADKLELEFIDFDVRQLFEQLAESMALGAQTKGVGLVVDLT 961
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSL 784
++ DPGR RQI N++ N+IKFT+ +G I +S L + DK +
Sbjct: 962 GVQTAMINSDPGRIRQIAANILSNAIKFTE-QGEIVMSASLTHSISD-----DKTM---- 1011
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
L ++DTG+GIP E
Sbjct: 1012 ---------------------------------------------LTCRIQDTGIGIPEE 1026
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
+F F+Q D+ST+R YGGTG+GLSI++ L +L+GG++ S G GS F FT
Sbjct: 1027 MLSSLFDSFIQVDASTTRKYGGTGLGLSITKRLCQLLGGDVSVSSTVGHGSCFEFTCQVN 1086
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLR--ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962
E P+ F L AL++D + EV ++ L+R ++ V A+S +
Sbjct: 1087 PCEITE---------PNAPAFSSLNIHALLVDSDTSSNEVIKHQLERWQVQVSEAHSAEQ 1137
Query: 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL 1022
A LS + V L + ++ +EI +Q R+ L+ L + LL
Sbjct: 1138 ALQILSASSIDIVFFSRTLPTMSSELMTREI--------RQNRQLSQLK----LIMMTLL 1185
Query: 1023 ATSISETDRDELKSDGIVTLLTKPLR-------LSVLIGCFQEDPESSKKLQQKRKKPSL 1075
+ + DG TKP LS L ++ ++ +Q +
Sbjct: 1186 DEQFDAVESSPVPLDG---YFTKPATQHDLMKALSGLEPSKNQEEDTGPSHKQSQADTQD 1242
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFDACFMD 1133
K +L+V+DN VN+ VA L+ G + + G A+DKL T + MD
Sbjct: 1243 FPWAKDTHVLLVEDNKVNQLVATRILEHLGVTIDIAENGLEALDKLRNTETQAYTLLLMD 1302
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
QMP+MDG++AT +IR + +G + +PI+AMTA+ +Q ++
Sbjct: 1303 CQMPKMDGYEATRRIRSAQ--------AGNHYTD---------IPIIAMTANAMQGDRQK 1345
Query: 1194 CMKCGMDDYVSKPFEDEQL 1212
C+ GMDDY++KP E ++
Sbjct: 1346 CLDAGMDDYITKPIESAKV 1364
>gi|385799765|ref|YP_005836169.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM
2228]
gi|309389129|gb|ADO77009.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM
2228]
Length = 1043
Score = 243 bits (621), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 185/614 (30%), Positives = 297/614 (48%), Gaps = 107/614 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K +AE A+ AKS+FLA +SHEIRTP+N + G++ +++DT L Q DY + +S L
Sbjct: 307 KQKAELANKAKSEFLANMSHEIRTPINAIKGLIYLILDTPLSMQQKDYLKKIQSSTVSLS 366
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
LIND+LD +KIE+ +L+ E F L DVL ++ + + KA KG+E Y +D VP+ +
Sbjct: 367 RLINDILDFSKIEAKKLDLEAEEFALDDVLHDLSNQAAMKAYDKGLEF-FYDTDHVPQKL 425
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
+GD R QI+ NLV N+IKFT+ G + + V + K+ +K V + + + +
Sbjct: 426 VGDSLRLGQILLNLVSNAIKFTE-TGEVRLIVRIIKKTEQKIKLKFIVKDTGIGMTKEEQ 484
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
K+++ F D++ T
Sbjct: 485 QKLFS---------------QFTQADSSTT------------------------------ 499
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
R YGGTG+GL+IS+ LVE MGGEI S+P GSTF+FT F G++ L
Sbjct: 500 ----------RKYGGTGLGLTISQRLVEKMGGEIKVESKPAEGSTFTFTAQFGLGKQPQL 549
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
K ++Y D + L++DD + + + + + V A+ LA +
Sbjct: 550 SQKLKKYNLDHK-----KVLIVDDIKMNRDFLIGVIDQFGLEVEAASGALLAIEKIKKES 604
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
L+ +D + D + G+ ++K++ LE+ +PKI L+ E +
Sbjct: 605 DYD------LIFMDWKMPDLD-GIKAATIIKEEL---NLEL---VPKIILITAFGKELEN 651
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQE-----DPESSKKLQQKRKKPSLGHLLKGKQILV 1086
+ K+ I +L KP+ S+L + E K ++ LG + ILV
Sbjct: 652 SQQKN--IDKILFKPITQSILFNALLNSLGGVNIEKEKNKNGEKILKDLGPV----NILV 705
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
V+DN +N++VA L+K A V D G+ A+ FD MD+QMPEMDG+QAT
Sbjct: 706 VEDNKINQQVAVELLRKVKAQVEIADNGKKAI-AKIKKQKFDLVLMDVQMPEMDGYQATK 764
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
+IR ++ L +PI+AMTA+ I+ E+ + GMDDY++KP
Sbjct: 765 KIRQ--------------------DLNLNKLPIIAMTANAIKGHKEKALAMGMDDYITKP 804
Query: 1207 FEDEQLYTAVARFF 1220
+ +Q ++ + ++
Sbjct: 805 LDLDQFFSTLKKWL 818
>gi|386036266|ref|YP_005956179.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae KCTC
2242]
gi|339763394|gb|AEJ99614.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae KCTC
2242]
Length = 830
Score = 243 bits (621), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 190/629 (30%), Positives = 298/629 (47%), Gaps = 121/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +QI+TNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTE-HGNIDVLVEQRAISNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++++T G P D+ +
Sbjct: 447 --------------IQIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAV 954
F ++ L+P +PD GL R ++ + A+ T LEM
Sbjct: 513 WFHISL------DLNPNA---IPDTLNTDGLVGKRLAYVEANATAAQCT------LEMLA 557
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ L Y S T S+ Q ++L+ V +++ +++ +S
Sbjct: 558 ----ATPLEVIY-SPTFSSLAEAQYDILLVGIPVSMRDLS------PHREKLAKACAMSD 606
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE--SSKKLQQ--KR 1070
N + L ++ + LK DG+ L KPL + L+ +S L Q
Sbjct: 607 N---VLLALPCHAQVSAEALKRDGVAACLLKPLTTTRLLPALVATSHALASAPLMQIDSH 663
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K P ++ VDDN N ++ L V D G+ AVDK D
Sbjct: 664 KLP--------MTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK-AKQLQMDLI 714
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A I HL + P++A+TA ++
Sbjct: 715 LMDIQMPDMDGIRACELIHHLSHH--------------------QQTPVIAVTAHALEGQ 754
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L+ + R+
Sbjct: 755 REKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|146307980|ref|YP_001188445.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina ymp]
gi|145576181|gb|ABP85713.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina ymp]
Length = 914
Score = 243 bits (621), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 194/656 (29%), Positives = 303/656 (46%), Gaps = 116/656 (17%)
Query: 572 TAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSH 631
TA+ + + +ITL +G +RI ++ + + +A AKS+FLA +SH
Sbjct: 363 TAVKIGVTIELITLSIG-----LADRINLLKEEGFQSRRAAEQAAFESQAKSRFLAKMSH 417
Query: 632 EIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691
EIRTP+NGVLGMLQ+L +T LD +Q Y T +SG L+++IND+LD A+IESG+L E
Sbjct: 418 EIRTPLNGVLGMLQLLRETPLDRSQRFYVDTISSSGSSLMAVINDILDYARIESGKLSLE 477
Query: 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIK 751
+ F L D++ LSLF+ +A K + L + + VP + GDP R +Q++ NL+ N++K
Sbjct: 478 QIEFDLEDMISETLSLFTGQALDKRLRLYVSLEGGVPRRIQGDPTRLKQVLMNLLSNALK 537
Query: 752 FTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWE 811
FT + GH+ VSV D + + V + + + K++ E
Sbjct: 538 FTAE-GHVAVSVSRRSDSHGQPHLVFAVSDSGIGISEQALAKLF---------------E 581
Query: 812 NFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGL 871
+F D++ T+R YGG+G+GL
Sbjct: 582 SFAQGDSS----------------------------------------TTRRYGGSGLGL 601
Query: 872 SISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD--VSEFRGLR 929
+IS+ LVE+MGG I S PG G+ F+F + E PD G
Sbjct: 602 AISKELVEMMGGRIEVQSTPGQGTRFAFDIPLLEAPE----------APDDLARLLAGRT 651
Query: 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVW 989
AL+ + + L R M + + YL D + +L +A + W
Sbjct: 652 ALLASLDGLGLDALSRLLGRWGMRTERCQTPERLQDYLEDFTAPPLLVLMAPWPGSVNHW 711
Query: 990 DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGI-VTLLTKPLR 1048
+ L ML+ Q+R +L E + +S G+ + L +PL
Sbjct: 712 LES----LRPMLQLQQR--------------VLLVCPPEACQQLPESKGLRLQHLAQPLA 753
Query: 1049 LSVL---IGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHG 1105
++ L + E+P + + + G ILV +DN VN+ V +G LKK G
Sbjct: 754 INALRQALTGLYEEPRAQVHHLVREVRSDKG---DAPCILVAEDNPVNQLVVQGFLKKRG 810
Query: 1106 AIVTCVDCGRAAVDKLT-PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGES 1164
V V G+AAVD+ + P MD +MP MDGF+AT QIR LE+ ++Q+ +
Sbjct: 811 YSVRLVTDGQAAVDEYSRDPAAVQLILMDCEMPVMDGFEATRQIRRLEH--SQQLGA--- 865
Query: 1165 SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
VPI+A+TA ++ + M GMDD++ KP + + LY+ + RF
Sbjct: 866 ------------VPIIALTAHILDEHRQHGMDAGMDDFLGKPLDSKLLYSTLERFL 909
>gi|359787767|ref|ZP_09290764.1| two-component sensor/response regulator hybrid [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359256448|gb|EHK59292.1| two-component sensor/response regulator hybrid [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 762
Score = 243 bits (621), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 189/638 (29%), Positives = 284/638 (44%), Gaps = 115/638 (18%)
Query: 590 IFHAAINR-IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM 648
+ H AI R I + ++ + RAE A AKS+FLATVSHEIRTPMNG++GM ++L
Sbjct: 223 VSHRAIARDITARKRAETALINARERAEHASQAKSRFLATVSHEIRTPMNGIMGMAKLLA 282
Query: 649 DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLF 708
DT L Q Y S L++LI D+LD +KIE+GR EPE P ++ +NV+ L
Sbjct: 283 DTRLSPEQRTYVGAVSTSASALLALIEDLLDYSKIEAGRFEPEPQPMSPRELTENVVELL 342
Query: 709 SSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD 768
+S+A + I L +V+ VP ++ DPGR RQ++ NL+GN+IKFT D G + V+V +
Sbjct: 343 ASRAFARNIGLGCHVAPEVPHMITADPGRVRQVLLNLIGNAIKFT-DAGGVLVTVTRSGA 401
Query: 769 VRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRI 828
RS + V +T G D + +E F+ D T+T
Sbjct: 402 GRSGM----------------IRFSVADTGPGLRQTDMERIFEEFEQADGTST------- 438
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
R +GG G+GL+ISR +V+ MGG I
Sbjct: 439 ---------------------------------RAHGGAGLGLAISRRIVKSMGGSISVT 465
Query: 889 SEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQ 948
SE G GS FSF + + + G A+++ ++ AE ++
Sbjct: 466 SEFGAGSEFSFEIPAAA--------ATEAQQARGTVLAGHHAVILSKNTVEAEAIACTIR 517
Query: 949 RLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008
+ +A +++ A ++ + C ++L AL D + + L+Q
Sbjct: 518 AYGGSAEIAATVEQATAF-AGHCD-ALLVDAALEAGDGRILKR---------LRQVGFTA 566
Query: 1009 GLEISRNLPKIFLLATSISETDR---DELKSDGIVTLLTKPLRLSVLIGCFQED---PES 1062
G I T I+ TDR E ++ G T L +P+R L+ P +
Sbjct: 567 GEAI-----------TLIAPTDRGMLGEFRASGYATFLARPVRGETLLRVLLAGAAVPAT 615
Query: 1063 SKKLQQKRKKPSLGHLLK-GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL 1121
+ K H G IL+ +DN +N +A L+K G V V G+AAV+ +
Sbjct: 616 QGQAPAKAASAPARHTKPLGLSILIAEDNDINAMLARATLQKAGHRVEIVGNGKAAVEAV 675
Query: 1122 T---PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
T P H +D MDL MP MDG A IR E E+ G+ VP
Sbjct: 676 TGAGPKHRYDVVLMDLHMPVMDGLDAIAVIRRHEEEM-----------------GIVPVP 718
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
I+ ++AD + + + G +V+KP + E L AV
Sbjct: 719 IMVLSADNQEKTRHAVLAHGASGFVTKPLDPEALVEAV 756
>gi|260771912|ref|ZP_05880830.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14]
gi|260613204|gb|EEX38405.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14]
Length = 929
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 208/761 (27%), Positives = 346/761 (45%), Gaps = 135/761 (17%)
Query: 465 VVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTT 524
++ T + + L +D T R LGY+ D+ SL + ++ S +++ +
Sbjct: 130 ILRTPILAESRLLEDNTNSARSVPVLGYIAIELDLSSLRLQQYQEIFSACLVLIMGLVLS 189
Query: 525 NASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVIT 584
+ A M+ DVT + + N+ D R+ + R + K ++ I + ++
Sbjct: 190 SVFAVRLMH--DVTRP-ITHMKNM--VDRIRRGHLDVRIEGKMHGELDSLRKGINAMAVS 244
Query: 585 LLVGHIFHAAINRIAQVENDYHEMME-----------LKARAEAADVAKSQFLATVSHEI 633
L H+ + I Q +D E +E K RA+ A KS+FLA +SHE+
Sbjct: 245 LSEYHV--EMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARIKSEFLANMSHEL 302
Query: 634 RTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFV 693
RTP+NGV+G + ++ T+L +Q DY QT S +L+++IND+LD +K+E+G+L E +
Sbjct: 303 RTPLNGVIGFTRQMLKTQLTNSQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALENI 362
Query: 694 PFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFT 753
PF + L+ V++L ++ A++KG+E+ + V ++P ++GDP R +Q++TNLVGNSIKFT
Sbjct: 363 PFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPLGLVGDPLRIQQVLTNLVGNSIKFT 422
Query: 754 QDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENF 813
++G+I +SV ++RS+ D
Sbjct: 423 -ERGNIDISV----EMRSQRD--------------------------------------- 438
Query: 814 KMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSI 873
++L V DTG+GI Q ++F F QAD+S SR YGGTG+GL I
Sbjct: 439 ------------DMVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVI 486
Query: 874 SRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RA 930
++ LV MGGEI S GSTF FT+ P + D + + L +
Sbjct: 487 TQKLVGQMGGEISLTSRLHQGSTFWFTLRL---------PTTTMPISDWVDTQALLDKQL 537
Query: 931 LVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWD 990
L+++ A + + L + + V +SM + +L++
Sbjct: 538 LLVEPNMQAASIVQQQLVQAGLTVTYRSSMPEESEHYD------------YILLNLSPTK 585
Query: 991 KEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPL-RL 1049
+ ++ ++Q + P + + S D+L V +TKPL R
Sbjct: 586 ETDSTIVEQWIQQALQSA--------PHVIIGTPSTELALADQLMKHYPVQCVTKPLSRR 637
Query: 1050 SVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGA-IV 1108
+L P ++Q R+ L ++ VDDN N ++ L++ A +V
Sbjct: 638 KLLQTLLAHQPTLPTPIEQPREIDKLP-----LTVMAVDDNPANLKLISALLQERVAQVV 692
Query: 1109 TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEM 1168
TC D G +AV++ T FD MD+QMP MDG A I+ L
Sbjct: 693 TCSD-GISAVEQATL-RAFDIILMDIQMPHMDGVSACKAIKQLPLNTT------------ 738
Query: 1169 FGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
PI+A+TA + ++ +K GMDDY++KP E+
Sbjct: 739 --------TPIIAVTAHAMAGERDRLLKAGMDDYLTKPIEE 771
>gi|336309781|ref|ZP_08564758.1| sensory box histidine kinase/response regulator [Shewanella sp.
HN-41]
gi|335866775|gb|EGM71738.1| sensory box histidine kinase/response regulator [Shewanella sp.
HN-41]
Length = 1236
Score = 243 bits (620), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 186/613 (30%), Positives = 293/613 (47%), Gaps = 105/613 (17%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E K AE A++ KS+FLA +SHEIRTPMN ++GMLQ+ T L A Q DY + A S
Sbjct: 708 LLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTPLTAQQKDYLEKAGFSA 767
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+G+LE E VPF L VLD+ L L + KA ++G+EL +Y
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTA 827
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
++ GDP R Q++ NL+ N++KFTQ G I + + ++ +K V + +
Sbjct: 828 GLILKGDPLRLGQVLINLLSNAVKFTQ-SGEIELGCEDVGERDHRITLKFWVRDTGIGIS 886
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
+ + +K+++ F D + T
Sbjct: 887 KDQQEKLFDA---------------FAQADGSTT-------------------------- 905
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R YGGTG+GLSIS+ LV +MGG++ SE G GSTFSFT++F E
Sbjct: 906 --------------RKYGGTGLGLSISKHLVSMMGGKMQVQSELGIGSTFSFTISFEIAE 951
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
++P VP+ + LR LV+DD ++ ++ V A S A L
Sbjct: 952 EAKVEP---LVVPE--KLNNLRTLVVDDNPTALQIYSAVMRDFHFEVDTAASGAEALYKL 1006
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLH---YMLKQQRRKGGLEISRNLPKIFLLAT 1024
S + L+L+D + + + G V+ M+ + R I + P I ++
Sbjct: 1007 SRDP-------IDLLLLDWMMPEMDGGDVISAIDTMVAEGR------IPKR-PIIIMMTA 1052
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPSLGHLLK 1080
+E + E+ S + +L KP + S L I F ++P + + G
Sbjct: 1053 YAAEPLQYEVDSANVFAVLQKPFKASSLFDEIIAAFADEPRLNMVQPMAEIESEAGE--H 1110
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+L+V+DN +N++VA LK G V D G+ A+D + FDA MD+QMP MD
Sbjct: 1111 TGLVLLVEDNFINQQVATELLKSAGYEVVLADNGQIALD-IIDSRPFDAVLMDIQMPVMD 1169
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G A +R E+ ++ E +PI+AMTA + E+ + GM+
Sbjct: 1170 GLTAARALR-------ERYSADE-------------LPIIAMTAHAMSGDREKSLAAGMN 1209
Query: 1201 DYVSKPFEDEQLY 1213
+++KP +L+
Sbjct: 1210 AHITKPIVLNELF 1222
>gi|149908724|ref|ZP_01897385.1| hypothetical two-component sensor [Moritella sp. PE36]
gi|149808266|gb|EDM68205.1| hypothetical two-component sensor [Moritella sp. PE36]
Length = 768
Score = 243 bits (620), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 180/611 (29%), Positives = 291/611 (47%), Gaps = 99/611 (16%)
Query: 605 YHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAH 664
Y E+ K +AE A++ KS+FLA +SHEIRTPMNGV+G +L + + Q ++ +
Sbjct: 227 YRELETAKRQAEDANLKKSEFLANMSHEIRTPMNGVIGTASLLQEMPMGREQKEFVDMLY 286
Query: 665 NSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724
+S L+ LIND+LD +KIESG+L P +L ++ + S FS A QK I L ++
Sbjct: 287 SSSITLLDLINDILDFSKIESGQLILAKNPLNLFELCKEIESNFSIIARQKQIALVCHID 346
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSL 784
D +P++V+GD + RQ++ NL+ N+IKFT G + +++ L D + + ++++ +
Sbjct: 347 DNIPDMVLGDITQLRQVLNNLLSNAIKFTS-IGCVRLNIKLMDRKDNNAGIMFQIIDSGI 405
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
G ++ K +E F+
Sbjct: 406 ---------------GIAAENQQKIFEKFQ------------------------------ 420
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
QAD ST+R YGGTG+GL+I R +V+LM +I S+PG GS F F V F
Sbjct: 421 ----------QADGSTTRNYGGTGLGLAICRSIVKLMDSDILVYSKPGKGSRFEFAVQF- 469
Query: 905 EGERNSLDPKWQQYVPDVSE-FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
S+D Q+ PD + GL L+IDD + +T L+ + L+
Sbjct: 470 ----ESIDELLQR--PDSEQSLAGLSILLIDDSMLNMRITSAQLKSFGATSVCCDDPCLS 523
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
S + D LV+IDK V G + L+ E + P++ L++
Sbjct: 524 KSVVLDALDKG--KPFDLVIIDK-VMPTMDGFTVAKQLQD-------EFAELTPRLMLMS 573
Query: 1024 TSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK- 1082
D + G+ L++P + +L + ++ Q K+ + + +
Sbjct: 574 AEAQVGDDVLARKLGVRAFLSRPYKADILKKVVLQTLMNA---QPKQMETVVEETVAADE 630
Query: 1083 -QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
Q+L+V+D ++N++V + L+K G +VT D G+ AVD L F+ MD QMP +DG
Sbjct: 631 MQVLLVEDTLINQKVTKMMLQKLGIVVTIADNGQIAVD-LCKEQGFNLILMDCQMPVLDG 689
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
F AT IR E +G+ H PI+A+TA+V+Q ++C GMDD
Sbjct: 690 FDATKIIRDSET-------AGQ------------HTPIIALTANVLQIEKDKCFAAGMDD 730
Query: 1202 YVSKPFEDEQL 1212
+++KP + L
Sbjct: 731 FIAKPVSKQVL 741
>gi|336323037|ref|YP_004603004.1| multi-sensor hybrid histidine kinase [Flexistipes sinusarabici DSM
4947]
gi|336106618|gb|AEI14436.1| multi-sensor hybrid histidine kinase [Flexistipes sinusarabici DSM
4947]
Length = 2009
Score = 243 bits (620), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 199/629 (31%), Positives = 295/629 (46%), Gaps = 87/629 (13%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
+ A++E + L AEAA+ +KS+FLA +SHEIRTP+N V+GM Q+L DT L+ Q
Sbjct: 1257 QTAKLEEARKNALSLAEDAEAANKSKSEFLANMSHEIRTPLNAVMGMGQLLADTPLNDQQ 1316
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
+Y S K L+ +INDVLD +KIE+G+LE + F+LHDV++++ ++FSSKA +K
Sbjct: 1317 RNYLAKIDRSSKLLLGIINDVLDVSKIEAGKLELDPHSFNLHDVVNDMRTMFSSKAQKKR 1376
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
+EL I +P LVG+S++ Q ++
Sbjct: 1377 LELIIEADPDLPRA--------------LVGDSMRLEQVIANLL---------------- 1406
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
S+ + T SG + K+ E D+ +L +V D
Sbjct: 1407 --------------SNALKFTESGHVSLHINKAREAATSPDSC---------RLRFSVTD 1443
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
+G+G+ E R+F PF QADSST+R YGGTG+GL ISR LVE MGG + S PG GST
Sbjct: 1444 SGIGMNEEQMGRLFNPFSQADSSTTRKYGGTGLGLVISRRLVEAMGGRLEVTSAPGEGST 1503
Query: 897 FSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHV 956
F FT+ + + + D +F LV+DD+ V R L+ V
Sbjct: 1504 FFFTIELPKASDQTGLADRPASLSDNMKF-----LVVDDQEPARIVLREILESWNGDVVE 1558
Query: 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
A + A + + +L+D + + GL LK G L
Sbjct: 1559 AAGGRKAVEEV--LAAQKQNRPFDFILMDWKMPGEMDGLEAIRHLKHLHETGTL-TGDET 1615
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLI-GCFQEDPESSKKLQQKRKK--P 1073
P + A S E R E SD L KP+ S L Q + +QQ P
Sbjct: 1616 PVFMISAYSEDEIPRSE--SDLYQAFLEKPVTASELFDAIMQATGKEMGTVQQTNSATTP 1673
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
S G +L+V+DN +N+ VA ++K A V + G A+ + ++ D MD
Sbjct: 1674 SFA----GYTVLLVEDNEMNQEVATAFIEKTKAKVITAENGTDAL-QCYEENSIDLVLMD 1728
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
LQMP MDGF AT +IR EN+ GN HVPI+A++A V+ A ++
Sbjct: 1729 LQMPVMDGFDATAEIRRRENDSE-------------GNA---HVPIIALSAAVLDADRKK 1772
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+ G D ++ KP + ++LY + ++ S
Sbjct: 1773 AAEAGADGHLGKPIDSQELYAVMGQYLKS 1801
>gi|118594848|ref|ZP_01552195.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
HTCC2181]
gi|118440626|gb|EAV47253.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
HTCC2181]
Length = 875
Score = 243 bits (620), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 183/615 (29%), Positives = 291/615 (47%), Gaps = 99/615 (16%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AE A KS+FLA +SHEIRTPMNG++GM + + T+LD Q DY + +GK L+
Sbjct: 135 KQLAEDAAKMKSEFLANMSHEIRTPMNGIIGMSHLALKTDLDPRQRDYVKKIQQAGKHLL 194
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
+IND+LD +KIE+G+L E + F + +++ N+ ++ K ++K +EL + +P +
Sbjct: 195 GIINDILDFSKIEAGKLSIEEITFDIDEMMSNIANMIGQKCSEKNLELIFHFPQDLPHKL 254
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDP R QI+ N N+IKFT+ KG + +S ++LE+ + K
Sbjct: 255 IGDPLRLSQILINYGNNAIKFTE-KGEVIISA--------------EILERDDEGIFIKF 299
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
+ V +T G + K +++F+ D
Sbjct: 300 N-VSDTGIGLTKEQKSKLFQSFQQAD---------------------------------- 324
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
+STSR +GGTG+GL+I++ L LMGGE+G SE G GSTF FT F L
Sbjct: 325 ------TSTSRKFGGTGLGLAIAKQLAGLMGGEVGVESEYGKGSTFWFTAKF------QL 372
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
D + V + G R LVIDD + + L + + V +A S + A L
Sbjct: 373 DKTISKRVLFKEDLTGKRVLVIDDNEAARFIMKDMLTAMSLEVTLAKSGKEA---LRQAV 429
Query: 972 STSVLPQ-LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETD 1030
+ + Q L+ +D + G+ LK+ I + P L+ S+
Sbjct: 430 EANNMGQPFELIFVDYLMPPGMNGIDFTKALKEL-------IGSSAPPCILVTAYASDEL 482
Query: 1031 RDELKSDGIVTLLTKPLRLSVLIGCFQE-----DPESSKKLQQKRKKPSLGHLLKGKQIL 1085
+ +GI ++ KP+ S+L ESS + K LKG +IL
Sbjct: 483 IHDSSIEGIEHVIPKPVNASLLFETILSIFNLFTTESSINSYEAGNKNKDIAALKGVRIL 542
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
+ +DN++N+++A L G ++ + G+ AVD + + + MD+QMP MDG +AT
Sbjct: 543 LAEDNLLNQQIATEILGDEGLVIDVANNGQEAVD-MVNKNAYAMVLMDMQMPIMDGLEAT 601
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
IR + F N L P+LAMTA+ A ++C+ GMD +++K
Sbjct: 602 RTIR-----------------KNFSNDDL---PVLAMTANASDADRQKCLASGMDAHITK 641
Query: 1206 PFEDEQLYTAVARFF 1220
P + L+T +A++
Sbjct: 642 PIDPVLLFTEIAKWI 656
>gi|423121876|ref|ZP_17109560.1| signal transduction histidine-protein kinase BarA [Klebsiella oxytoca
10-5246]
gi|376393489|gb|EHT06146.1| signal transduction histidine-protein kinase BarA [Klebsiella oxytoca
10-5246]
Length = 917
Score = 243 bits (620), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 188/629 (29%), Positives = 292/629 (46%), Gaps = 121/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRNALDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ +IGDP R +QIITNLVGN+IKFT+ H + V + S V+
Sbjct: 389 ELTLNIKNDVPDNIIGDPLRLQQIITNLVGNAIKFTE---HGNIDVLVEQRALSNTSVQI 445
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++ ++++T G P D+ +
Sbjct: 446 EI-------------QIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P Q P G I+ + A+ T L L + V +
Sbjct: 513 WFHINL------DLNPNAVQESPLTHCLAGKTLAYIEANAAAAQCTMELLTTLPLEVVYS 566
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLID----KDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
+ S L + +L L + + D KD K + H +L
Sbjct: 567 PTF----SALPEAHYDILLAGLPVSMRDLSQQKDNLAKACAMADHLLLA----------- 611
Query: 1014 RNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP 1073
LP ++ + + LK DG+ L KPL + LI + R
Sbjct: 612 --LP-------CHAQINAETLKQDGVAACLLKPLTATRLIPALTASCRT-------RTPI 655
Query: 1074 SLGHLLKGK---QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
L H K ++ VDDN N ++ L VT D G+ AV++ D
Sbjct: 656 VLPHSDSSKLPMTVMAVDDNPANLKLIGVLLDDLVQHVTLCDSGQRAVEQ-AKEMQLDLI 714
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A IRHL ++ P++A+TA
Sbjct: 715 LMDIQMPDMDGIRACELIRHLPHQ--------------------QQTPVIAVTAHAFDGQ 754
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ MK GM+DY++KP E+++L+ + R+
Sbjct: 755 KEKLMKAGMNDYLAKPIEEDKLHNLLLRY 783
>gi|336246899|ref|YP_004590609.1| hybrid sensory histidine kinase BarA [Enterobacter aerogenes KCTC
2190]
gi|444354993|ref|YP_007391137.1| BarA sensory histidine kinase (= VarS = GacS) [Enterobacter aerogenes
EA1509E]
gi|334732955|gb|AEG95330.1| hybrid sensory histidine kinase BarA [Enterobacter aerogenes KCTC
2190]
gi|443905823|emb|CCG33597.1| BarA sensory histidine kinase (= VarS = GacS) [Enterobacter aerogenes
EA1509E]
Length = 916
Score = 243 bits (620), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 187/623 (30%), Positives = 297/623 (47%), Gaps = 109/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRNTLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQVITNLVGNAIKFTE-HGNIDVLVEQRAMSNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
VQ +++T G P D+ +
Sbjct: 447 ---------VQ-----IHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F ++ L+P D G + I+ + A+ T L + V +
Sbjct: 513 WFHISL------DLNPNAITDGFDTHCLAGKKLAYIEANTTAAQSTMELLATTPLEVVYS 566
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
++ S L D +L + + + D L QR K L + +L
Sbjct: 567 PTL----SALPDAHYDILLAGIPVSMRD---------------LSNQREK--LVRACSLS 605
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+L ++ +ELK +G+ L KPL + L +S + Q +P +
Sbjct: 606 DTLVLGLPCHAQVSAEELKRNGVTACLLKPLTSTRLFPVLM----ASCRAQPPVPQPYID 661
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L V D G+ AV++ D MD+QM
Sbjct: 662 SDKLAMTVMAVDDNPANLKLIGALLDDLVQHVILCDSGQDAVEQ-AKQSQLDLILMDIQM 720
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A IRHL ++ P++A+TA ++ E+ +
Sbjct: 721 PDMDGIRACELIRHLPHQ--------------------QQTPVIAVTAHALEGQREKLLA 760
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM+DY++KP E+++L T + R+
Sbjct: 761 AGMNDYLAKPIEEDKLSTLLLRY 783
>gi|428771294|ref|YP_007163084.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
gi|428685573|gb|AFZ55040.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
10605]
Length = 1594
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 189/604 (31%), Positives = 286/604 (47%), Gaps = 104/604 (17%)
Query: 616 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIN 675
++A+ AKS+FLA++SHEIRTPMN + G + + +L Q Y + + L+ +IN
Sbjct: 851 DSANKAKSEFLASMSHEIRTPMNAIQGFTHLALQEDLSNKQKSYLVKIQKACESLLLIIN 910
Query: 676 DVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDP 735
D+LD +KIE+G+L+ E F L ++L +V +L + +KG+EL + D + +GD
Sbjct: 911 DILDFSKIEAGKLDLEADNFLLDNILTDVANLLHPRIQEKGLELVFDIDDHLDCSFLGDS 970
Query: 736 GRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVY 795
R QI+TNL+ N+IKFT+ KG I ++ VR + +DK
Sbjct: 971 LRLSQILTNLINNAIKFTE-KGQIVIT------VRRQQITEDK----------------- 1006
Query: 796 NTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855
I L VEDTGVGI + +F PF Q
Sbjct: 1007 --------------------------------ITLYFCVEDTGVGIAKDKLSLLFKPFSQ 1034
Query: 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNS-LDPK 914
AD+S +R YGGTG+GL ISR L+E+MGG+I S+ GS F FT+ +G NS L P+
Sbjct: 1035 ADNSITRKYGGTGLGLVISRRLIEIMGGKIWAESQENKGSKFHFTINLNKGNSNSNLIPR 1094
Query: 915 WQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTS 974
++S LV+DD SI +V L+ AV NS A L
Sbjct: 1095 ------NLSHLTSNPILVVDDNSIIRQVITRFLESFSFAVKAVNSGLEAIKELEKGEK-- 1146
Query: 975 VLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLL-ATSISETDRDE 1033
L++ID W L+ + Q K I+ N+P I ++ A ISE + +
Sbjct: 1147 ---DYKLIIID---WQMP---YLNGIETIQAIKANPNIT-NIPLILMITAHHISELEELK 1196
Query: 1034 LKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQK-----RKKPSLGHLLKGKQILVVD 1088
K + + L+KP+ S L E L+ PS + +L+V+
Sbjct: 1197 KKQE-LQHFLSKPITKSSLFNAILEVFNHKSYLEDSSCVMVNTYPSF-QCFQNCHLLLVE 1254
Query: 1089 DNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQI 1148
DN +N+ + L++ + + G A++K+ N+DA MD+ MPEMDG +AT +I
Sbjct: 1255 DNEINQEIVVELLQEID--IDVANNGLEALEKVM-TQNYDAILMDISMPEMDGLEATKRI 1311
Query: 1149 RHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFE 1208
R LE E +++ PI+AMTA + E +K GM+D+++KP
Sbjct: 1312 RKLEGEYFQKL------------------PIIAMTAHAMTGDKELSLKAGMNDHITKPIN 1353
Query: 1209 DEQL 1212
QL
Sbjct: 1354 PNQL 1357
>gi|398846008|ref|ZP_10603014.1| PAS domain S-box [Pseudomonas sp. GM84]
gi|398252999|gb|EJN38150.1| PAS domain S-box [Pseudomonas sp. GM84]
Length = 1462
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 190/632 (30%), Positives = 298/632 (47%), Gaps = 100/632 (15%)
Query: 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ 656
R V D E+++ +A AE A AKS+FLA +SHEIRTPMN ++GM + + T LD+ Q
Sbjct: 711 RATGVNIDVTELIKARAVAEEATRAKSEFLANMSHEIRTPMNAIIGMSHLALRTGLDSKQ 770
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKG 716
Y + H S ++L+ +IND+LD +KIE+GR+ E++PF L DVLD+ +L KA +K
Sbjct: 771 RHYIEKVHRSAENLLGIINDILDYSKIEAGRMGLEYIPFRLEDVLDSFANLIGLKAEEKK 830
Query: 717 IELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776
+EL +P T L+G+ ++ Q + ++L +
Sbjct: 831 LELLFQTPPDLP--------------TALIGDPLRLGQ------ILINLGN--------- 861
Query: 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVED 836
N+V K + ++G V + T EQ + L + D
Sbjct: 862 --------NAV--KFTETGEVVAGVEEV--------------SATDEQ---VSLHFWMRD 894
Query: 837 TGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896
TG+G+ +E R+F F QADSS +R YGGTG+GLSIS+ LVE+MGG I S G GST
Sbjct: 895 TGIGMSVEQCERMFQSFSQADSSITRKYGGTGLGLSISKKLVEMMGGRIWVESTLGQGST 954
Query: 897 FSFTVTFTEGERNSLDPKWQ-QYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVH 955
F F V R L Q Q + + E G+R LV+DD + E+ + +
Sbjct: 955 FHFQV------RLGLQQGAQAQRMFNAGELLGMRVLVVDDNASAREILCAMARSFGLEAD 1008
Query: 956 VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015
VA S A L+ + P LVL+D + + + M + R+
Sbjct: 1009 VAQSGTEALGLLA-SAEARAQP-YDLVLMDWRMPGMDGMETVSRM--------NADSLRH 1058
Query: 1016 LPKIFLLATSISETDRDELKSDG--IVTLLTKPLRLSVL---IGCFQEDPESSKKLQQKR 1070
P + ++ + ++E + G I +LTKP+ S L IG + + +R
Sbjct: 1059 TPPVIMVTAFGRDEAQEEAERQGIQIPVVLTKPVTPSSLLEAIGTVLGRVQQGETRAAER 1118
Query: 1071 KKPSLGHL--LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFD 1128
S + L+G ++L+V+DN +N+ +A L+ G + G+ A+D L FD
Sbjct: 1119 SGHSASNQAGLRGARLLLVEDNEMNQELARELLESVGVTLRLAGHGQEALDILAVDSRFD 1178
Query: 1129 ACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188
MD QMP MDG+ AT +IR +P++AMTA+ ++
Sbjct: 1179 GVLMDCQMPVMDGYTATRKIREQPR--------------------FAQLPVIAMTANAME 1218
Query: 1189 ASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E + GM+D++ KP + ++ +AR+
Sbjct: 1219 GDREDALASGMNDHIPKPLNVDAMFATLARWI 1250
>gi|283786671|ref|YP_003366536.1| two-component sensor kinase/response regulator [Citrobacter rodentium
ICC168]
gi|282950125|emb|CBG89761.1| two-component sensor kinase/response regulator [Citrobacter rodentium
ICC168]
Length = 918
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 181/626 (28%), Positives = 294/626 (46%), Gaps = 114/626 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFALRNTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT++ G+I + V +KV ++
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTEN-GNIDILVEKRSISNTKVQIEV 447
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++ + + G P D+ +
Sbjct: 448 QIRDTGI---------------GIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ + A+ T + +
Sbjct: 513 WFHINL------DLNPSVISDGPATMSLAGKRIAYVEPNATAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y S T S ++L+ V KE + H L Q + +
Sbjct: 557 SETPLEVIY-SPTFSALAAEHYDIMLLGVAVTFKEPLTMQHERLIQATK---------MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQE---DPESSKKLQQKRKKP 1073
+LA ++ + ++LK DG+ + L KPL + L+ E L +K
Sbjct: 607 DYLMLALPCHAQVNAEKLKQDGVASCLLKPLTSTRLLPALVELCRHNHHDNALPVNDRKI 666
Query: 1074 SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133
++ ++ VDDN N ++ L V D G+ AVD+ FD MD
Sbjct: 667 AM-------TVMAVDDNPANLKLIGALLDDLVQHVELCDSGQQAVDR-AKQMQFDLILMD 718
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+QMP+MDG +A I L ++ P++A+TA + E+
Sbjct: 719 IQMPDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEK 758
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+DY++KP E+++L++ + R+
Sbjct: 759 LLSAGMNDYLAKPIEEDKLHSLLLRY 784
>gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
gi|386315116|ref|YP_006011281.1| sensor histidine kinase for anaerobic respiratory control, ArcS
[Shewanella putrefaciens 200]
gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS
[Shewanella putrefaciens 200]
Length = 1234
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 184/614 (29%), Positives = 291/614 (47%), Gaps = 103/614 (16%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E K AE A++ KS+FLA +SHEIRTPMN ++GMLQ+ T L Q DY + A S
Sbjct: 708 LLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTPQQKDYLEKAGFSA 767
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+G+LE E VPF L VLD+ L L + KA ++G+EL +Y
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTA 827
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
++ GDP R Q++ NL+ N++KFTQ G I + + ++ +K V + +
Sbjct: 828 GLILKGDPLRLGQVLINLLSNAVKFTQ-SGEIELGCEDVGERDHRITLKFWVRDTGIGIS 886
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
+ + +K+++ F D + T
Sbjct: 887 KDQQEKLFDA---------------FAQADGSTT-------------------------- 905
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R YGGTG+GLSIS+ LV +MGG++ SE G GSTFSFT++F E
Sbjct: 906 --------------RKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTISFEIAE 951
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
++P VP+ + LR LV+DD ++ ++ V A S A L
Sbjct: 952 EAKVEP---LVVPE--KLNNLRTLVVDDNPTALQIYSAVMRDFHFEVDTAASGAEALYKL 1006
Query: 968 S-DTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026
S D +L + + DV +V L ++ P I ++
Sbjct: 1007 SRDPIDLLLLDWMMPEMDGSDVISAIDTMVAEGRLDKR------------PVIIMMTAYS 1054
Query: 1027 SETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPSLGHLLKGK 1082
+E + E++S + +L KP + S L I F ++P + + Q ++ +G
Sbjct: 1055 AEPLQYEVESANVFAVLQKPFKASSLFDEIIAAFADEPRLN--VVQSMEETDVGE--HTG 1110
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+L+V+DN +N++VA LK G V D G+ A+D + FDA MD+QMP MDG
Sbjct: 1111 LVLLVEDNFINQQVATELLKSAGYEVVLADNGQVALD-IIDSRPFDAVLMDIQMPVMDGL 1169
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
A +R E+ + E +PI+AMTA + E+ + GM+ +
Sbjct: 1170 TAARALR-------ERYSPEE-------------LPIIAMTAHAMSGDREKSLAAGMNAH 1209
Query: 1203 VSKPFEDEQLYTAV 1216
++KP +L+ +
Sbjct: 1210 ITKPIVLNELFETL 1223
>gi|254444470|ref|ZP_05057946.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
gi|198258778|gb|EDY83086.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
Length = 1323
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 205/625 (32%), Positives = 300/625 (48%), Gaps = 115/625 (18%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE-LDAAQLDYAQTAH 664
E+ L A A+ A+ AKSQFLA +SHEIRTP+NGV+GM +L+D+ L++ Q A+
Sbjct: 670 EELARLAAEADDANRAKSQFLANMSHEIRTPINGVIGMTSLLLDSPGLNSEQSKQARVIQ 729
Query: 665 NSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724
+SG+ L++LIND+LD +K+E+G+L+ E + F L D LD++ L +A +K +E
Sbjct: 730 SSGEALLALINDILDFSKVEAGKLDLEILDFDLRDTLDDLSLLLGQRAGEKQLEFICKAD 789
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSL 784
++VP+ + GDPGR RQI+ NL GN+IKFT + G + V V LAD D K +L
Sbjct: 790 NQVPDRLRGDPGRLRQILINLAGNAIKFTAN-GSVKVLVSLADR-----DEKTALLR--- 840
Query: 785 NSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLE 844
F V+D TG+GI E
Sbjct: 841 ----------------FSVID-------------------------------TGIGISEE 853
Query: 845 AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904
+ +F+ F QADSST+R YGGTG+GL+IS+ LV LM GEIG SE G+GS F FT
Sbjct: 854 KKRLLFSEFTQADSSTTRLYGGTGLGLAISKQLVNLMDGEIGVTSEKGSGSEFWFTARLP 913
Query: 905 EGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA--NSMQL 962
E SE++ + + KS V R QRL++ + N
Sbjct: 914 YEE---------------SEYKNEQRHYLSGKSALL-VVRRDGQRLDLEERLNEWNIESA 957
Query: 963 ACSYLSDTCS-----TSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+CS S S ++ ++ +L D + D ++ L + G+E ++
Sbjct: 958 SCSLASAGLSLLRERAAMARKVDFLLFDPESSDLDVASFLEEVR-------GIEGLGSVK 1010
Query: 1018 KIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGH 1077
I L + + K DG L P R S L E E +K + + + H
Sbjct: 1011 TIVLGGPEL------DAKLDG-SERLDSPYRRSELYNILVEGTEPVRKSEYVFEDFAAEH 1063
Query: 1078 LL-KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP-PHNFDACFMDLQ 1135
+ +ILV +DN+VN+ V G L+K G V G A++ L P +D MD+Q
Sbjct: 1064 FKDRAARILVAEDNIVNQMVVRGILEKFGLHADTVANGFEALEALRRIP--YDLVLMDVQ 1121
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MPE+DG +A+ +IR GE+ +M VPI+A+TA E C+
Sbjct: 1122 MPELDGLEASRRIR-----------DGEAGEKMK------DVPIVALTAHARTEDREICL 1164
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARFF 1220
GMD+Y SKP L+ + R
Sbjct: 1165 NAGMDEYTSKPVAPRVLFRILDRML 1189
>gi|408418332|ref|YP_006759746.1| two component system sensor histidine kinase, barA-like
[Desulfobacula toluolica Tol2]
gi|405105545|emb|CCK79042.1| two component system sensor histidine kinase, barA-like
[Desulfobacula toluolica Tol2]
Length = 1144
Score = 243 bits (619), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 188/631 (29%), Positives = 292/631 (46%), Gaps = 125/631 (19%)
Query: 612 KAR--AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
KAR AE A +KS+FLA +SHEIRTPMN ++G+ + T++ Q DY SG
Sbjct: 382 KARIAAEEASRSKSEFLANMSHEIRTPMNAIIGLAHLAQKTDMTPKQNDYLNKIEASGLS 441
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+ +IND+LD +KIE+ +L E + F L VLDNV++L + KA +KG+EL VS VP
Sbjct: 442 LLGIINDILDFSKIEANKLSIESIEFDLQAVLDNVVNLINIKAEEKGLELLFDVSRDVPL 501
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL--ADDVRSKVDVKDKVLEKSLNSV 787
++GDP R QI+ NL GNSIKFT + G I + V L D +++ ++ V + +
Sbjct: 502 GLVGDPLRLGQILINLAGNSIKFTLN-GQILIKVALLNEDPEKARARLQFSVSDSGIGMT 560
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
Q + K++ ++F D + T + G
Sbjct: 561 QDQISKLF---------------QSFSQADGSTTRQYGG--------------------- 584
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
TG+GL+IS+ LV +MGGEI S G GSTF+FT F
Sbjct: 585 -------------------TGLGLTISKQLVGMMGGEISVKSIYGEGSTFTFTAEFGVQT 625
Query: 908 RNSLDPKWQQYVPDVS--EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
+ + ++P +S E G+R L++DD E+ R ++ V S + A S
Sbjct: 626 Q-------KPFIPMISPGELHGMRVLIVDDNEKSREILRDLMKEFHFNVSEVPSGEAAIS 678
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR---------NL 1016
L ++S LVL+D W Q G+E +R +
Sbjct: 679 ELK---TSSKKAPYDLVLMD---W-------------QMNGMDGIETARRIKEDSGIAKI 719
Query: 1017 PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE------DPESSKKLQQKR 1070
P I ++ E + ++ G+ L KP+ S+L + P+ ++
Sbjct: 720 PAILMVTAFGREEVMSQAQTVGLDGFLIKPINRSLLFDAIMDLFGRSNLPDQDLVSRETT 779
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHN-FDA 1129
+ + ++ G +IL+V+DN +N++VA L+ G IVT G A+ L + FD
Sbjct: 780 RINGIDYVC-GARILLVEDNKINQQVATELLESAGLIVTVAGDGLEALAVLKDTDSVFDG 838
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
MD+QMP MDGF+ T IR N L +PI+AMTA+ +
Sbjct: 839 ILMDIQMPNMDGFETTRMIRK--------------------NPALSELPIIAMTANAMAG 878
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E+C+ GM+D++ KP E + L+ + ++
Sbjct: 879 DREKCLDAGMNDHIPKPIEPDILFKTLIKWL 909
>gi|419764461|ref|ZP_14290701.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|397743044|gb|EJK90262.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 916
Score = 243 bits (619), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 190/629 (30%), Positives = 298/629 (47%), Gaps = 121/629 (19%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+A Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAVRIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + A+ KG+
Sbjct: 329 DHLTTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +QI+TNLVGN+IKFT+ G+I V V S+V ++
Sbjct: 389 ELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTE-HGNIDVLVEQRAISNSRVQIE- 446
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++++T G P D+ +
Sbjct: 447 --------------IQIHDTGIGIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGL---RALVIDDKSIRAEVTRYHLQRLEMAV 954
F ++ L+P +PD GL R ++ + A+ T LEM
Sbjct: 513 WFHISL------DLNPNA---IPDTLNTDGLVGKRLAYVEANATAAQCT------LEMLA 557
Query: 955 HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISR 1014
+ L Y S T S+ Q ++L+ V +++ +++ +S
Sbjct: 558 ----ATPLEVIY-SPTFSSLAEAQYDILLVGIPVSMRDLS------PHREKLAKACAMSD 606
Query: 1015 NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPE--SSKKLQQ--KR 1070
N + L ++ + LK DG+ L KPL + L+ +S L Q
Sbjct: 607 N---VLLALPCHAQVSAEALKRDGVAACLLKPLTTTRLLPALVATSHALASAPLMQIDSH 663
Query: 1071 KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
K P ++ VDDN N ++ L V D G+ AVDK D
Sbjct: 664 KLP--------MTVMAVDDNPANLKLIGALLDDLVQQVILCDSGQQAVDK-AKQLQMDLI 714
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP+MDG +A I HL + P++A+TA ++
Sbjct: 715 LMDIQMPDMDGIRACELIHHLSHH--------------------QQTPVIAVTAHALEGL 754
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E+ + GM+DY++KP E+E+L+ + R+
Sbjct: 755 REKLLSAGMNDYLAKPIEEEKLHALLLRY 783
>gi|337265957|ref|YP_004610012.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
WSM2075]
gi|336026267|gb|AEH85918.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
WSM2075]
Length = 1255
Score = 243 bits (619), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 205/665 (30%), Positives = 302/665 (45%), Gaps = 162/665 (24%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ E + RA AD AKS+FLA +SHEIRTPMNGVLGM ++L + LD Q + S
Sbjct: 689 ELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTDIIVKS 748
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G L+++IND+LD +KI++G+L + PF+L + +++V +L S++A +K +EL + + R
Sbjct: 749 GNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRIEPR 808
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+ + IGD GR RQI+TNL+GN++KFT D+GH+ V V + + +
Sbjct: 809 LGSLFIGDVGRIRQIVTNLLGNAVKFT-DEGHVLVD----------------VTGERMPT 851
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ V +T G P +E F +D ++T
Sbjct: 852 GTKLTISVTDTGIGIPEEKLKLVFEKFSQVDTSST------------------------- 886
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R + GTG+GL+I+ LVELMGG+IG S G GSTF F VT
Sbjct: 887 ---------------RRHEGTGLGLAITSRLVELMGGKIGVESAEGKGSTFWFEVTLPSA 931
Query: 907 ERNSLDPKWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
E+ + Q+ +P DV+ G R L++DD AV+ A + S
Sbjct: 932 EQQN----GQRIMPVDVT---GARVLIVDDN----------------AVNRAILTEQMTS 968
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIG-LVLHYMLKQQRRKGGLEISR---------N 1015
+ D+C+ + VLI + + +VL Y + G E++R N
Sbjct: 969 WTFDSCAAESGAEGLKVLIAAAAYGVPVDCVVLDYQMPGM---SGAEMARIVRNTAGLAN 1025
Query: 1016 LPKIFLLAT--SISETDRDELKSDGIVTLLTKPLRLSVLIGCF----------------- 1056
P I L + S++ T +L GI L KP R SVL+
Sbjct: 1026 TPIIMLTSVDQSLANTSYRDL---GIDAQLIKPARSSVLLETLVATVQRHRHTTVGHAAQ 1082
Query: 1057 ---QEDP-----------ESSKKLQQ---KRKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
E P E +LQ + + P++G + ILV +DN VN+ V
Sbjct: 1083 PSAGEAPNAPQRQSLAPSEQRAQLQPPPVRPRLPAVGGDGQRLDILVAEDNEVNQMVFTQ 1142
Query: 1100 ALKKHGAIVTCVDCGRAAVD---KLTPPHNFDAC--FMDLQMPEMDGFQATWQIRHLENE 1154
L + G V GR A+D KL P C MD+ MPEM G +AT IR LE +
Sbjct: 1143 ILGETGYGFEIVSNGRKALDAFGKLNP------CMILMDVSMPEMSGLEATAAIRRLEED 1196
Query: 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYT 1214
HVPI+ +TA ++ E+C++ GMDDY+ KP L
Sbjct: 1197 TGT------------------HVPIVGVTAHALKGDRERCLEAGMDDYLPKPISPRALLE 1238
Query: 1215 AVARF 1219
V R+
Sbjct: 1239 KVERW 1243
>gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella benthica
KT99]
gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella benthica
KT99]
Length = 1235
Score = 243 bits (619), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 182/614 (29%), Positives = 292/614 (47%), Gaps = 100/614 (16%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E K AE+A+V KS+FLA +SHEIRTPMN ++GMLQ+ TEL Q DY + A S
Sbjct: 708 LLEAKQDAESANVYKSEFLANMSHEIRTPMNAIIGMLQLAERTELTPKQRDYLEKAGFSA 767
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+G+LE E V F L VLD+ L L + K+ QKG+EL +Y
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKSQQKGVELLLYAPVTA 827
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
++ GDP R Q++ N++ N++KFTQ G I + + ++ +K V + +
Sbjct: 828 GLILEGDPLRLGQVLINMLSNAVKFTQ-TGEIELGCEDVGERDHRITLKFWVRDTGIGIS 886
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
+ + +++ F D + T + G TG+G
Sbjct: 887 KEQQASLFDA---------------FAQADGSTTRKYGG----------TGLG------- 914
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
LSIS+ LV +MGG++ SE G GSTFSFT++F E
Sbjct: 915 -----------------------LSISKHLVSMMGGQMQVQSEMGVGSTFSFTISFEIAE 951
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
+ P VP+ L+ALV+DD ++ ++ V A + A L
Sbjct: 952 EAEMKP---MIVPE--RLGHLKALVVDDNPTALQIYSTVMRDFHFEVDTAANGSEALYKL 1006
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
+ +L + +D G+ + L + G L+ P + ++ +
Sbjct: 1007 EKSSVDLLLLDWMMPEMD--------GIQVIDELDRMVADGRLD---KRPIVIMMTAYAA 1055
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPSLGHLLKGKQ 1083
E ++++ I +L KP + S L IG F E+P+ S +Q + ++ H
Sbjct: 1056 EPLKEDVDRSNIYAMLQKPFKASALFNEIIGAFAEEPKVSSVIQVEVEEVVDTH---AGV 1112
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+V+DN++N++VA LK G V D G+ A+D L +FDA MD+QMP MDG
Sbjct: 1113 VLLVEDNVINQQVATELLKSAGYEVDVADNGQIAIDMLA-EKDFDAVLMDIQMPVMDGLT 1171
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT +IR + L +PI+AMTA + E+ + GM+ ++
Sbjct: 1172 ATREIRK--------------------HFSLHELPIIAMTAHAMSGDREKSLSAGMNAHI 1211
Query: 1204 SKPFEDEQLYTAVA 1217
+KP +L+ ++
Sbjct: 1212 TKPIVLSELFDTLS 1225
>gi|410462156|ref|ZP_11315756.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409984711|gb|EKO41000.1| PAS domain S-box [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 1502
Score = 242 bits (618), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 193/611 (31%), Positives = 280/611 (45%), Gaps = 127/611 (20%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KS FLA +SHEIRTPMN ++G+ + + TEL Q DY + + L+ +IND+LD +
Sbjct: 769 KSDFLANMSHEIRTPMNAIVGLSHLALTTELTPRQRDYMGKIQQASQHLLGIINDILDFS 828
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+G+L E F L VL+NV +L KA KG+EL V+ VP+ ++GDP R QI
Sbjct: 829 KIEAGKLAIERADFDLSAVLENVAALIREKAEAKGLELLFDVAADVPQDLVGDPLRLGQI 888
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ N N++KFT+ G + + V L + D + VL +V +T G
Sbjct: 889 LVNYANNAVKFTE-AGEVGIRVRLVSE-----DGGEAVLRF----------EVRDTGIGL 932
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
T EQ+ R+ F F QAD+ST+
Sbjct: 933 -------------------TEEQIARL---------------------FQSFSQADASTT 952
Query: 862 RTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPD 921
R +GGTG+GL+IS+ L ELM GE+G S PG GSTF FT + + + +PD
Sbjct: 953 RRFGGTGLGLAISKRLAELMRGEVGVESTPGAGSTFWFTARLRKSRKRR-----RVLLPD 1007
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
+ RG R LV+DD V L + +V A S Q A S L + +
Sbjct: 1008 -PDLRGRRVLVVDDNESARTVLTDMLAAMSFSVEAAASGQEALSTLEAAQGKN--QPFEV 1064
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL--------PKIFLLATSISETDRDE 1033
VL+D W Q GLE + + P + ++ E
Sbjct: 1065 VLLD---W-------------QMPGMDGLETAERIRARYNAPPPHLVMVTAFGREEVLRG 1108
Query: 1034 LKSDGIVTLLTKPLRLSVL-------IGCFQEDPESSKKLQQKRKK-PSLGHLLKGKQIL 1085
++ G +L KP+ S+L +G F+E+ + Q + P G L L
Sbjct: 1109 VEDGGFEAVLLKPVTPSLLFDTLMRALGGFREEQRQAPDDQAGQASHPGQGRL------L 1162
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD--KLTPPHNFDACFMDLQMPEMDGFQ 1143
VV+DN VN++VA L + G V + G A+ + TP +D FMD+QMP MDG
Sbjct: 1163 VVEDNEVNQQVARELLTQAGYTVDVAENGEVALAMVRRTP---YDLVFMDMQMPVMDGLA 1219
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
AT IR L G +PI+AMTA+ + E+C+ GM+D+V
Sbjct: 1220 ATIAIRKLP--------------------GFAALPIVAMTANAMLQDREKCLAAGMNDFV 1259
Query: 1204 SKPFEDEQLYT 1214
+KP + + L+
Sbjct: 1260 AKPIDPQALFA 1270
>gi|334125404|ref|ZP_08499393.1| sensor histidine kinase GacS [Enterobacter hormaechei ATCC 49162]
gi|333386867|gb|EGK58071.1| sensor histidine kinase GacS [Enterobacter hormaechei ATCC 49162]
Length = 919
Score = 242 bits (618), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 185/627 (29%), Positives = 299/627 (47%), Gaps = 116/627 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + +EL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD+V++L + ++ KG+
Sbjct: 329 DHLHTIERSANNLLTIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I + V +KV ++
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNIDILVEKRSLSNNKVQIEV 447
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++ + + G P D+ +
Sbjct: 448 QIRDTGI---------------GIPERDQTR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P Q P +G+R ++ + A+ T + V
Sbjct: 513 WFHINL------DLNPNVQTDGPVTGCLKGMRLAYVEPNAAAAQCT----------LDVL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDV-WDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
+S L Y S T S ++L+ V + E+ + QQ R L + ++
Sbjct: 557 SSTPLEVVY-SPTFSALANDHYDILLLGIPVTFTGELTM-------QQER---LAKAASM 605
Query: 1017 PKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQED---PESSKKLQQKRKK 1072
LLA ++ + +ELK+DG L KPL + L+ E S L+ K
Sbjct: 606 TDYLLLALPCHAQINAEELKNDGAAACLLKPLTATRLLPALTEYCRLTHQSLPLENDEHK 665
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
+ ++ VDDN N ++ L+ V G AV++ FD M
Sbjct: 666 LPM-------TVMAVDDNPANLKLIGVLLEDQVQHVELCTSGAEAVEQ-AKQMQFDLILM 717
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP MDG +A IR L ++ P++A+TA + E
Sbjct: 718 DIQMPGMDGIRACELIRQLPHQ--------------------QQTPVIAVTAHAMAGQKE 757
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ + GM+DY++KP ++E+L++ + R+
Sbjct: 758 KLLGAGMNDYLAKPIDEEKLHSLLLRY 784
>gi|319781102|ref|YP_004140578.1| ATPase domain-containing protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166990|gb|ADV10528.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 779
Score = 242 bits (618), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 194/652 (29%), Positives = 295/652 (45%), Gaps = 132/652 (20%)
Query: 601 VENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
+ + E E +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L T+L Q +
Sbjct: 213 IRRAFAESAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDLTPRQKTFT 272
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
SG L+++IND+LD +KI +G+L + PF L + +++V +L S++ +K +EL
Sbjct: 273 DVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLSEAVEDVATLVSARVAEKNLELI 332
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
+ V R+P V+GD GRFRQIITNL+GN++KFT+ KGH+ +DV ++
Sbjct: 333 VRVDPRLPAHVVGDAGRFRQIITNLLGNAVKFTE-KGHVL------------IDVGGEI- 378
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
+N V +V +T G P +E F +D ++T
Sbjct: 379 ---VNDVVQLKIRVEDTGIGIPAEKLQNVFEKFAQVDGSST------------------- 416
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
R + GTG+GL+I+ LV+LM G+IG SE G GS F F
Sbjct: 417 ---------------------RRHEGTGLGLAIAARLVDLMAGKIGVESEIGRGSVFWFA 455
Query: 901 VTFTEGERNSLDPKWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
V + + D + VP DV+ G R LVIDD + E+ L+ A S
Sbjct: 456 VPLPAHQAAARD----EIVPVDVT---GARVLVIDDNPVNREILLEQLRSWSFDCAAAES 508
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
+ ++L + +++D + V + R ++P +
Sbjct: 509 GAVGLAFLDRAFQLGA--AVDCIILDYQMPGMNGADVARAIASDSRLS-------SIPVV 559
Query: 1020 FLLATSISETDRDELKSD-GIVTLLTKPLRLSVLIG----CFQEDPESSKKLQQKR---- 1070
L TS+ + D ++ D GI LTKP R +VL+G Q+ K Q R
Sbjct: 560 LL--TSVDQVDFGKMIIDFGIAAHLTKPARSAVLLGTVISVVQKARSQVGKAQFVREPIV 617
Query: 1071 -------------KKPSLGHLLKGKQ---------ILVVDDNMVNRRVAEGALKKHGAIV 1108
+ P+L + IL+ +DN VN+ V L G
Sbjct: 618 QAPPAAPPAFTVIRGPALPVAAAPESTTTPNGPIDILIAEDNDVNQLVFGQILNGLGLSY 677
Query: 1109 TCVDCGRAAVD---KLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESS 1165
GR AV+ L P MD+ MPEM+G++AT IR +E
Sbjct: 678 RIAGNGRTAVEMYRALRP----KLILMDVSMPEMNGYEATRAIRAMETSTGT-------- 725
Query: 1166 AEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
H+PI+ +TA ++ ++C++ GMDDY+ KP ++L T +
Sbjct: 726 ----------HIPIIGVTAHALKGDRDKCIESGMDDYLPKPVSPDRLGTKIG 767
>gi|377577312|ref|ZP_09806295.1| two-component histidine kinase BarA [Escherichia hermannii NBRC
105704]
gi|377541840|dbj|GAB51460.1| two-component histidine kinase BarA [Escherichia hermannii NBRC
105704]
Length = 917
Score = 242 bits (618), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 182/624 (29%), Positives = 290/624 (46%), Gaps = 110/624 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + T+L+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L + LD V++L + A+ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRNTLDEVMTLLAHSAHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL I + + VP+ VIGDP R +Q++TNLVGN+IKFT+ G+I + V SKV ++
Sbjct: 389 ELTINIKNDVPDNVIGDPLRLQQVLTNLVGNAIKFTE-SGNIDIFVEKRAISHSKVQIEV 447
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++ + + G P D+ +
Sbjct: 448 QIRDTGI---------------GIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV MGGEI F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQRLVNEMGGEISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + + +D + + G R I+ A+ T + +
Sbjct: 513 WFHINLDLNQNVVVDRQTTE------NLAGRRIAYIEPNPSAAQST----------LGIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y S T + ++L V +E + H +L + + +
Sbjct: 557 ATTPLTVIY-SPTFAGLTDDHYDILLYATSVTQREPLTMQHELLAK---------AATMT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQED-PESSKKLQQKRKKPSL 1075
LLA ++ D + LK +G L KP+ + LI E P L+ ++ L
Sbjct: 607 DCLLLALPCHAQVDAEALKKEGAAGCLLKPITETRLIPLLLEHCPNGQPALRPVDEQGKL 666
Query: 1076 GHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
++ VDDN N ++ L+ H + D G A+++ D MD+Q
Sbjct: 667 -----PMTVMAVDDNPANLKLIAALLEDHVQHIELCDSGLQALER-AKAQPLDLILMDIQ 720
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MPEMDG +A IR L + H P++A+TA + E+ +
Sbjct: 721 MPEMDGIRACELIRQLPHH--------------------QHTPVIAVTAHAMAGQKEKLL 760
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARF 1219
GM+DY++KP E+E+L + R+
Sbjct: 761 AAGMNDYLAKPIEEEKLRALLLRY 784
>gi|222110175|ref|YP_002552439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
gi|221729619|gb|ACM32439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
Length = 1611
Score = 242 bits (618), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 189/619 (30%), Positives = 291/619 (47%), Gaps = 102/619 (16%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E+ K AE KS+FLA +SHEIRTP+N ++GM + + + LDA Q Y +
Sbjct: 866 ELRRAKELAEETAALKSRFLANMSHEIRTPLNAIIGMSHLALKSGLDARQSGYVVRMQQA 925
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
G+ L+ +IND+LD +KIE+G+L E PF L +L+ V + KA KG+EL + V+
Sbjct: 926 GQHLLGVINDILDFSKIEAGKLVVERSPFALDRMLEGVADVVGFKAAAKGLELVLDVAPD 985
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
VP+ +LVG++++ Q + ++ A+ N+
Sbjct: 986 VPQ--------------HLVGDALRLGQ------ILINFAN-----------------NA 1008
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
V+ + L + + W F+ V DTG+GI +
Sbjct: 1009 VKFTEQGEIHLLVRLERNEGARVWLRFE-------------------VRDTGIGIAPQQM 1049
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
R+F F QAD+ST+R YGGTG+GL+IS+ L ELMGGE+G SE G GS F TV G
Sbjct: 1050 QRLFQSFEQADTSTTRRYGGTGLGLAISKSLAELMGGEVGVRSELGHGSAFWVTVPLERG 1109
Query: 907 E---RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA 963
E R L W RG R LV+DD A+V LQ + + +S A
Sbjct: 1110 EPLPRALLRSDW----------RGCRVLVVDDNHTAAQVLVDMLQTMGLQATQVHSGVQA 1159
Query: 964 CSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
L D + L+L+D + + G+ L RR GL ++ ++P++ ++
Sbjct: 1160 LQALRDAVAEQR--PYGLLLLDWHMPGMD-GIEL------ARRIRGLGLA-HIPQMLMVT 1209
Query: 1024 TSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG--HLLKG 1081
+ D +S GI +L KP+ SVL + + + + S +L+G
Sbjct: 1210 AHGRDEVMDAARSAGIDNVLVKPVSASVLFDTLMQPLAQAWDVHPLPRSASGAAPAVLRG 1269
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+L+V+DN +N+ VA+ L+ G V G+ A+ + +D MD+QMP MDG
Sbjct: 1270 AVVLLVEDNELNQIVAQELLRDAGMHVDVASNGQEAIACID-RRRYDVVLMDMQMPVMDG 1328
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
AT Q+R + GL PI+AMTA+ +QA E+C GM+D
Sbjct: 1329 ETATRQLRADPR-----------------HAGL---PIIAMTANAMQADRERCFAAGMND 1368
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
+V KP + + L+ + R+
Sbjct: 1369 HVPKPIDPDVLWATLVRWL 1387
>gi|424896358|ref|ZP_18319932.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393180585|gb|EJC80624.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 1126
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 201/656 (30%), Positives = 298/656 (45%), Gaps = 128/656 (19%)
Query: 584 TLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGM 643
T+ G + A + ++++ E+ L +RAEAAD AKS+FLA +SHEIRTPMNGVLGM
Sbjct: 552 TISAGQHWVALFTDVTELKSREEELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGM 611
Query: 644 LQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDN 703
++L T LD Q + SG L+++IND+LD +KI++G+++ F + + +++
Sbjct: 612 AELLAKTNLDTRQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVED 671
Query: 704 VLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
V +L SS A +K IEL + + +P VIGD GRFRQI+TNLVGN++KFT+ +GH+FV V
Sbjct: 672 VATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTE-RGHVFVDV 730
Query: 764 HLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME 823
E + S ++ +T G P T +E
Sbjct: 731 G---------------FEPAAGGEIMASIRIEDTGIGIP----------------TEKLE 759
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
+ F F Q D+S++R + GTG+GL+I+ LV+L GG
Sbjct: 760 TV------------------------FDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGG 795
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
+ SE G GS F+ T+ F L+PK P +G R LV+DD EV
Sbjct: 796 YLNVESEWGKGSVFTVTLPFAVAAAR-LEPK-----PLPINVQGARILVVDDN----EVN 845
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
R L + QL+ + LA++ D+ +VL Y +
Sbjct: 846 RRIL-----------TEQLSLWGFDGVAAEGGGTGLAILEAAADLGVTVDAVVLDYHMPD 894
Query: 1004 QRRKGGLEISR---------NLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIG 1054
G +++R LP IFL + IS T+++ +G L+ KP R +VL
Sbjct: 895 M---NGADVARRLRADRRFVELPIIFLTSMDISGTEKEFAALNGQAHLM-KPARANVLRN 950
Query: 1055 CFQEDPESSKKLQQKRKKPS-----------------LGHLLKGKQILVVDDNMVNRRVA 1097
E +S+ Q + + + +LV +DN VN+ V
Sbjct: 951 TVVEVVRASRVKQASEAEIARLQAEAAVPVPPPAPVPQPRAAEFVDVLVAEDNEVNQIVF 1010
Query: 1098 EGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE 1157
L+ G V+ G AV H MD+ MP M+G QAT IR E
Sbjct: 1011 TQILQGTGLSFLVVNNGEEAVAAWE-RHTPRIIMMDVSMPVMNGHQATQTIREREK---- 1065
Query: 1158 QIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
G H VPI+ +TA +++ E C+ GMDDY+SKP E L
Sbjct: 1066 ---------------GQGHRVPIIGVTAHALESDRELCLDAGMDDYMSKPISPELL 1106
>gi|449467325|ref|XP_004151374.1| PREDICTED: signal transduction histidine-protein kinase BarA-like
[Cucumis sativus]
Length = 625
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 184/627 (29%), Positives = 297/627 (47%), Gaps = 108/627 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + +EL+ Q
Sbjct: 27 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQR 86
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD+V++L + ++ KG+
Sbjct: 87 DHLHTIERSANNLLTIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGL 146
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I + V +KV ++
Sbjct: 147 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNIDILVEKRALSNNKVQIEV 205
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++ + + G P D+ +
Sbjct: 206 QIRDTGI---------------GIPERDQSR----------------------------- 221
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 222 -----------LFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTF 270
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P Q P +G+R ++ + A+ T + V
Sbjct: 271 WFHINL------DLNPNVQTDGPVTDCLKGMRLAYVEPNAAAAQCT----------LDVL 314
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDV-WDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
+S L Y S T S ++L+ V + E+ + + K G S +
Sbjct: 315 SSTPLEVVY-SPTFSALANDHYDILLLGIPVTFTGELTMQQERLAKAASMTGSPRAS--M 371
Query: 1017 PKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQED---PESSKKLQQKRKK 1072
LLA ++ + +ELK+DG L KPL + L+ E S L+ K
Sbjct: 372 TDYLLLALPCHAQINAEELKNDGAAACLLKPLTATRLLPALTEYCRLTHQSLPLENDEHK 431
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
+ ++ VDDN N ++ L+ V G AV++ FD M
Sbjct: 432 LPM-------TVMAVDDNPANLKLIGVLLEDQVQHVELCTSGAEAVEQ-AKQMQFDLILM 483
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP MDG +A IR L ++ P++A+TA + E
Sbjct: 484 DIQMPGMDGIRACELIRQLPHQ--------------------QQTPVIAVTAHAMAGQKE 523
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ + GM+DY++KP ++E+L++ + R+
Sbjct: 524 KLLGAGMNDYLAKPIDEEKLHSLLLRY 550
>gi|357027212|ref|ZP_09089297.1| ATPase domain-containing protein [Mesorhizobium amorphae CCNWGS0123]
gi|355540911|gb|EHH10102.1| ATPase domain-containing protein [Mesorhizobium amorphae CCNWGS0123]
Length = 780
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 194/653 (29%), Positives = 300/653 (45%), Gaps = 133/653 (20%)
Query: 601 VENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
+ + E E +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L T+L + Q +
Sbjct: 213 IRRAFAESAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDLTSRQKTFT 272
Query: 661 QTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELA 720
SG L+++IND+LD +KI +G+L + PF L + +++V +L S++ +K +EL
Sbjct: 273 DVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLSEAVEDVATLVSARVAEKNLELI 332
Query: 721 IYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780
+ V R+P V+GD GRFRQIITNL+GN++KFT+ KGH+ V
Sbjct: 333 VRVDPRLPSFVVGDAGRFRQIITNLLGNAVKFTE-KGHVLVD---------------VGG 376
Query: 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840
+ +Q K +V +T G P +E F +D ++T
Sbjct: 377 DVVDGVIQLKV-RVEDTGIGIPAEKLQNVFEKFAQVDGSST------------------- 416
Query: 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
R + GTG+GL+I+ LV+LMGG+IG SE G GS F F
Sbjct: 417 ---------------------RRHEGTGLGLAIAARLVDLMGGKIGVESEIGRGSVFWFA 455
Query: 901 VTFTEGERNSLDPKWQQYVP-DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959
V ++ + D + VP DV+ G R LVIDD + E+ L+ A S
Sbjct: 456 VPLPAHQQAASD----EIVPVDVT---GARVLVIDDNPVNREILLEQLKSWSFDCAAAES 508
Query: 960 MQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKI 1019
+ ++L ++ + + +++D + V + R +P +
Sbjct: 509 GAVGLAFLDR--ASQLGASVDCIILDYQMPGMNGADVARAIAADSRLAA-------IPVV 559
Query: 1020 FLLATSISETDRDELKSD-GIVTLLTKPLRLSVLIG----CFQEDPESSKKLQQKRKKPS 1074
L TS+ + D ++ D GI LTKP R ++L+G Q+ K + R+ +
Sbjct: 560 LL--TSVDQVDFGKMVIDFGIAAYLTKPARSAILLGTVISVIQKARAQVGKARFVREPAA 617
Query: 1075 LGH---------LLKGK------------------QILVVDDNMVNRRVAEGALKKHGAI 1107
+++G IL+ +DN VN+ V L G
Sbjct: 618 PQATPAAAPAFTIIRGPAIPAPAAPESAAAANGPIDILIAEDNDVNQLVFGQILSGLGLS 677
Query: 1108 VTCVDCGRAAVD---KLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGES 1164
GR AV+ L P MD+ MPEM+G++AT IR +E + SG
Sbjct: 678 YRIAGNGRTAVEMYRALRPK----LILMDVSMPEMNGYEATGAIRAIEQQ------SGS- 726
Query: 1165 SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
H PI+ +TA ++ E+C++ GMDDY+ KP ++L T +
Sbjct: 727 -----------HTPIIGVTAHALKGDREKCIEAGMDDYLPKPVSPDRLGTKIG 768
>gi|225568541|ref|ZP_03777566.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM 15053]
gi|225162769|gb|EEG75388.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM 15053]
Length = 885
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 183/603 (30%), Positives = 293/603 (48%), Gaps = 97/603 (16%)
Query: 615 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN-SGKDLISL 673
AE A+ AKS+FL+ +SHEIRTP+N V+GM + + D A+++ T S + L+ L
Sbjct: 362 AENANAAKSEFLSRMSHEIRTPLNAVIGMTTIAAASVSDPARVEDCLTKITFSSRHLLML 421
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV-I 732
INDVLD +KIES ++ + PF + ++++ +S ++A K I + + V I
Sbjct: 422 INDVLDMSKIESSKMALQNEPFDIFEIVNGFVSTVYAQAKSKDIVFEETMEGFGKDTVFI 481
Query: 733 GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSD 792
GD R QI+ NL N++KFT G S+HL
Sbjct: 482 GDSLRLNQILMNLSSNAVKFTPPGG----SIHLD-------------------------- 511
Query: 793 KVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTP 852
V R+K Q I+ ++ +DTG+G+ EA RIF P
Sbjct: 512 -----------VSRYKKGN------------QADVIRFVL--KDTGIGMTKEAVGRIFQP 546
Query: 853 FMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL- 911
F QAD+S ++ YGGTG+G+SI+R L+ LMGG+I SEPG G+ F + F +GE N +
Sbjct: 547 FEQADASIAKRYGGTGLGMSITRNLITLMGGQIQVESEPGLGTAFIVDLPFEKGEENQMP 606
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
+P + Q + LRAL++DD+ E T L+++++ S A + ++
Sbjct: 607 EPDFGQ--------QKLRALIVDDERQVCEQTAVLLEKIKIDAQWRQSGAEALERVKESR 658
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDR 1031
+ L LID + D + G+ + +++ E+ ++P + + A ISE +
Sbjct: 659 REG--QDIDLCLIDWKMPDMD-GVEVTRRIRR-------EVGNDVPIVMISAYDISEVE- 707
Query: 1032 DELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNM 1091
+E ++ G+ L KPL S + + + + S L G +L+ +DN
Sbjct: 708 EEARAAGVNGFLPKPLYRSSVYAAVKAAMDRKMPRPADAEYKSADKPLNGIHLLIAEDNA 767
Query: 1092 VNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFDACFMDLQMPEMDGFQATWQIR 1149
+N+ +A L+ +GA CVD GR AVD + P +DA MD+QMP MDG++A +IR
Sbjct: 768 LNQEIAAALLRMNGAAADCVDDGRQAVDAFLASKPGEYDAVLMDVQMPVMDGYEAARRIR 827
Query: 1150 HLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFED 1209
++ +G +PI+A TA+ A + GM+ +VSKP +
Sbjct: 828 -----TSDHPQAG-------------TIPIIATTANAFSADVSSALAAGMNAHVSKPLDV 869
Query: 1210 EQL 1212
QL
Sbjct: 870 TQL 872
>gi|293392823|ref|ZP_06637141.1| sensor histidine kinase/response regulator [Serratia odorifera DSM
4582]
gi|291424682|gb|EFE97893.1| sensor histidine kinase/response regulator [Serratia odorifera DSM
4582]
Length = 909
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 191/664 (28%), Positives = 299/664 (45%), Gaps = 141/664 (21%)
Query: 589 HIFHAAINRIAQVENDYHEMME--------------------------LKARAEAADVAK 622
H+ IN +A YHE M+ K RA+ A K
Sbjct: 233 HMLKNGINSMAMSLTAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIK 292
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S+FLA +SHE+RTP+NGV+G + + T+L A Q DY QT S +L+++INDVLD +K
Sbjct: 293 SEFLANMSHELRTPLNGVIGFTRQTLKTDLSATQTDYLQTIERSANNLLTIINDVLDFSK 352
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
+E+G+L E +PF L + LD V+ L + A++KG+EL + V + VPE VIGD R +Q+I
Sbjct: 353 LEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDSLRLQQVI 412
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
TNL+GN++KFT + G+I + V L + +V+++ ++ + +G
Sbjct: 413 TNLLGNAVKFT-ETGNIDIRVELRNRFERQVELEVQIHD-----------------TGIG 454
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR 862
+ +R +S ++F F QAD+S SR
Sbjct: 455 ISERQQS--------------------------------------QLFQAFRQADASISR 476
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922
+GGTG+GL I++ LV+ MGG+I F S+ GSTF F +T E P +
Sbjct: 477 RHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITLDLNEGMLTLPSR------L 530
Query: 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAV-HVANSMQLACSYLSDTCSTSVLPQLAL 981
E +G I+ A+ T L ++ V H QLA +
Sbjct: 531 PELQGKTLAYIEANPTAAQATLNMLSVTQLIVTHSPTFAQLAKN---------------- 574
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI-SETDRDELKSDGIV 1040
D D I + + Q + K L+ + L K +LA S+ D ++LK G V
Sbjct: 575 ---DYDFLLVGIPIPFRDTIGQHKEK--LQEALQLAKRVILALPCQSQIDAEQLKQLGAV 629
Query: 1041 TLLTKPLRLSVLIGCFQ-EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
LTKP+ + L + E+P L ++R+ P +L VDDN N ++
Sbjct: 630 GCLTKPITANRLYPLLRMENPARQNALPERRRLP--------LTVLAVDDNPANLKLIGT 681
Query: 1100 ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159
L + + G A+ L + D MD+QMP +DG + IR + + +
Sbjct: 682 LLNEQVEQTLLCESGEEAI-ALARDNVLDMILMDIQMPNIDGIRTAELIRQMPHHNS--- 737
Query: 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
PI+A+TA + E ++ GMDDY++KP ++ L ++R+
Sbjct: 738 -----------------TPIVAVTAHAVSGEREHLLQSGMDDYLAKPIDEAMLTRVLSRY 780
Query: 1220 FMSG 1223
G
Sbjct: 781 HSDG 784
>gi|261342213|ref|ZP_05970071.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
gi|288315547|gb|EFC54485.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
Length = 919
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 184/627 (29%), Positives = 297/627 (47%), Gaps = 116/627 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + +EL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLHTIERSANNLLTIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I + V +KV ++
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNIDILVEKRALSNNKVQIEV 447
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++ + + G P D+ +
Sbjct: 448 QIRDTGI---------------GIPERDQSR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNKGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P +G+R ++ + A+ T + V
Sbjct: 513 WFHINL------DLNPNVLTDGPITDCLKGMRLAYVEPNAAAAQCT----------LDVL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
++ L Y S T S AL + D+ I + L Q+ + L + +
Sbjct: 557 STTPLEVIY-SPTFS-------ALAVEHYDILLMGIPVTFTGELTMQQER--LAKAAAMT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKK----LQQKRKK 1072
LLA ++ + +ELK+DG L KPL + L+ E S + + + K
Sbjct: 607 DYLLLALPCHAQINAEELKNDGAAACLLKPLTATRLLPALTEYCRLSNQPLPLVNDEHKL 666
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
P ++ VDDN N ++ L+ V D G AV++ FD M
Sbjct: 667 P--------MTVMAVDDNPANLKLIGVLLEDQVQHVELCDSGAQAVEQ-AKQMQFDLILM 717
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP MDG +A IR L ++ P++A+TA + E
Sbjct: 718 DIQMPGMDGIRACELIRQLPHQ--------------------QQTPVIAVTAHAMAGQKE 757
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ + GM+DY++KP ++E+L++ + R+
Sbjct: 758 KLLSAGMNDYLAKPIDEEKLHSLLLRY 784
>gi|428224217|ref|YP_007108314.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427984118|gb|AFY65262.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 957
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 201/633 (31%), Positives = 283/633 (44%), Gaps = 113/633 (17%)
Query: 598 IAQVENDYHEMMELKAR-------AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 650
+AQ EM E A AEAA+ AKS FLA +SHEIRTPMN V+GM +L+DT
Sbjct: 288 LAQETRQRQEMTEKNAALEHARYIAEAANHAKSSFLAVMSHEIRTPMNAVIGMTDLLLDT 347
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
L Q D+AQT SG+ L+++IND+LD +KIESG+L+ + PF L +++ L L +
Sbjct: 348 SLTPQQEDFAQTIRTSGEALLAIINDILDFSKIESGKLDIQNHPFDLRSCIESALDLLAP 407
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
KA +K +EL ++ VP ++GD R RQI+ NLVGN++KFT + FV++
Sbjct: 408 KAAEKQLELVYFIEPHVPTELVGDEVRLRQILVNLVGNAVKFTAEG---FVAI------- 457
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKL 830
V +SL S + L I+
Sbjct: 458 -------AVTGRSLTPDSQASSEA-----------------------------PLYTIRF 481
Query: 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
V +DTG+GIP + R+F PF Q DS T R YGGTG+GL IS+ L E+MGG I SE
Sbjct: 482 TV--QDTGIGIPSDRLDRLFRPFSQVDSFTGRQYGGTGLGLVISQRLSEMMGGRIWVDSE 539
Query: 891 PGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRL 950
GSTF +V + + G R L++DD ++ +
Sbjct: 540 VEQGSTFYVSVLMAARPAAPAPGRER-------PLAGKRLLLVDDHALVRHSLTTDAEAW 592
Query: 951 EMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLK-----QQR 1005
M V +S A + L+ V LID + D + G L ++ Q
Sbjct: 593 GMGVCAVDSGVAALARLAAGDRFDV------ALIDHTLPDTD-GHSLALRMREDYADQPL 645
Query: 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE-----DP 1060
L NLP I E D L + KP+R + L G E
Sbjct: 646 ALVLLAPLGNLP--------IPEVDERALFQAEV----HKPVRQAQLYGVLSEVLSEAPD 693
Query: 1061 ESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
+ + + +IL+ +DN+VN++VA LK+ G GR A++
Sbjct: 694 PIASPAPPPLAPAADALPPRSLRILLAEDNLVNQKVALHLLKRLGYSADVAHNGREALES 753
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP-I 1179
L +D MD+QMPEMDG AT +I + P I
Sbjct: 754 LQ-RRAYDLVLMDIQMPEMDGLSATRRI--------------------CADFPAQERPRI 792
Query: 1180 LAMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
+A+TA+ +Q EQC+ GMDDY SKP +L
Sbjct: 793 VAVTANAMQGDREQCLAAGMDDYTSKPLRIAEL 825
>gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
gi|418022350|ref|ZP_12661337.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
gi|353538575|gb|EHC08130.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
Length = 1238
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 183/613 (29%), Positives = 291/613 (47%), Gaps = 105/613 (17%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E K AE A++ KS+FLA +SHEIRTPMN ++GMLQ+ T L A Q DY + A S
Sbjct: 708 LLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDYLEKAGFSA 767
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+G+LE E VPF L VLD+ L L + KA ++G+EL +Y
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTA 827
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
++ GDP R Q++ NL+ N++KFTQ G I + + ++ +K V + +
Sbjct: 828 GLILKGDPLRLGQVLINLLSNAVKFTQ-SGEIELGCEDVGERDHRITLKFWVRDTGIGIG 886
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
+ + DK+++ F D + T
Sbjct: 887 KDQQDKLFDA---------------FAQADGSTT-------------------------- 905
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R YGGTG+GLSIS+ LV +MGG++ SE G GSTFSFT++F E
Sbjct: 906 --------------RKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTISFEIAE 951
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
++P VP+ + LR LV+DD ++ ++ V A S A L
Sbjct: 952 AAKIEP---LVVPE--KLNSLRTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKL 1006
Query: 968 SDTCSTSVLPQLALVLID---KDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
S + L+L+D ++ ++ + M+ + R P I ++
Sbjct: 1007 SRAP-------IDLLLLDWMMPEMDGSDVVSAIDTMVAEGRLA-------KRPVIIMMTA 1052
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPSLGHLLK 1080
+E + E+ S + +L KP + S L I F ++P + + Q + +
Sbjct: 1053 YAAEPLQHEVDSANVFAVLQKPFKASSLFDEIIAAFADEPRLN--VVQPMVEVQVEDGEH 1110
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+L+V+DN +N++VA LK G V G+ A+D + FDA MD+QMP MD
Sbjct: 1111 TGLVLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTID-SRPFDAVLMDIQMPVMD 1169
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G A +R E+ ++ E +PI+AMTA + E+ + GM+
Sbjct: 1170 GLTAARALR-------ERFSADE-------------LPIIAMTAHAMSGDREKSLAAGMN 1209
Query: 1201 DYVSKPFEDEQLY 1213
+++KP +L+
Sbjct: 1210 AHITKPIVLNELF 1222
>gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG-6]
gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6]
Length = 1149
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 189/612 (30%), Positives = 290/612 (47%), Gaps = 107/612 (17%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E K AE A A+S+FLA +SHEIRTPMNGV+GM +L+DT L+ Q +YA+T +SG
Sbjct: 500 LIEAKEAAEHATRARSEFLANMSHEIRTPMNGVIGMTGLLLDTPLNERQREYAETIRSSG 559
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+++IND+LD +KIESGR+E E PF + + +++ L L + A KG++LA ++ V
Sbjct: 560 ESLLTIINDILDLSKIESGRMELEQQPFEIQECVESALDLVAPTAFAKGLDLAYLIAADV 619
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
P ++I D R RQI+ NL+GN++KFT+ G + + V D + D V+E +
Sbjct: 620 PMMLISDVTRLRQILVNLLGNAVKFTE-HGEVTLQVSRYPDFDLEADQVHLVIEVRDTGI 678
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
DK+ F VD
Sbjct: 679 GIPPDKLDRLFRAFSQVD------------------------------------------ 696
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
+ST+RTYGGTG+GL I + L E++GG I S PG GSTF + G
Sbjct: 697 ----------ASTTRTYGGTGLGLVICKRLSEMLGGGISVESAPGQGSTFRVEMLAGVGS 746
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
+ Y D+ + G + L+++ R E+ + M+V+ Q A +
Sbjct: 747 EEDM------YALDM-DLAGRQILIVEPNPTRREMLSHAASGWGMSVYPLAVAQEALDLI 799
Query: 968 SDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSIS 1027
S L L+D + D G L L+ R G+ +LP + + S
Sbjct: 800 VAGGS------FDLALLDATLVDA-YGTPLTLALR--RFPAGV----DLPVVLI---SDL 843
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVL-------IGCFQEDPESSKKLQQKRKKPSLGHLLK 1080
T + L + I L KP++ +L +G + + + Q P H L+
Sbjct: 844 NTKQQTLPPN-IAWHLRKPIKRRLLYRALLAAVGAMEGMEYAQEPQVQPEPVPDERHSLR 902
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
IL+ +DN VN+RVA L++ G V G A++ + H +D MD+QMPE+D
Sbjct: 903 ---ILLAEDNAVNQRVALRTLERLGYRADVVGNGLEAIEAIARQH-YDVVLMDVQMPELD 958
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G +AT QI +A ++A I+AMTA+ ++ E+C+ GMD
Sbjct: 959 GLEATRQI----------VARWPATA---------RPRIIAMTANAMRGDRERCLAAGMD 999
Query: 1201 DYVSKPFEDEQL 1212
DY+SKP E+L
Sbjct: 1000 DYISKPVRLEEL 1011
>gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
Length = 1755
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 204/632 (32%), Positives = 304/632 (48%), Gaps = 114/632 (18%)
Query: 594 AINRIAQVENDYHEMMEL-KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL 652
IN+ + + +EL + +AE A+VAKSQFLA +SHEIRTPMN VLGMLQ++ T+L
Sbjct: 994 GINQDITIRKQFENSLELARQQAEQANVAKSQFLANMSHEIRTPMNAVLGMLQLVRQTQL 1053
Query: 653 DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKA 712
D Q DY A ++ + L++L+ND+LD +KI++G+LE + F L D+L + + S
Sbjct: 1054 DTRQQDYVVKAQSAAQSLLALLNDILDFSKIDAGKLELDIHAFSLEDMLRELAVVLSGNQ 1113
Query: 713 NQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
+ K +EL V +P V GD R QI+ NL GN++KFT+ G + +HL+
Sbjct: 1114 HHKTVELMFEVDPSLPLEVRGDKLRILQILINLGGNALKFTE-AGQVV--IHLS------ 1164
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
L + SV + +V T +G + T EQL R
Sbjct: 1165 ------ALRQDAASV---TLQVSVTDTGIGI-----------------TPEQLSR----- 1193
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
IF F QA+SST+R +GG+G+GL I + LV LMG E+ SEPG
Sbjct: 1194 ----------------IFNGFTQAESSTTRRFGGSGLGLVICQRLVALMGSELRVDSEPG 1237
Query: 893 TGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEM 952
GS FSF + E E +L PD+S LV+DD I E+ ++ +EM
Sbjct: 1238 RGSCFSFELCL-EVENKAL--SISVVAPDISH---CHVLVVDDCEISREIL---VKTIEM 1288
Query: 953 AVHVANSMQLACSYLSDTCSTSVLPQ-LALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011
++++ L S + +VL+D + + + G+ ++KQQ
Sbjct: 1289 RGWSCDAVESGAKALVKIISALKAGRPYDVVLVDWRMPEMD-GVATAKLIKQQFPDVA-- 1345
Query: 1012 ISRNLPKIFLLAT-------SISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSK 1064
P + +L+ ISE DR + +LTKP+ LI ++
Sbjct: 1346 ----CPVVIMLSAYGRELLGKISEQDRVIFRD-----ILTKPITPQQLIASIAR----AR 1392
Query: 1065 KLQQKRKKPSLGHL---LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL 1121
+ Q+ P + L L G ++L+V+DN +NR+VA L GA V + G V
Sbjct: 1393 QPAQRDSLPPVFELPQRLAGVRLLLVEDNALNRQVAGELLTHEGASVVMAEDGLQGVRIA 1452
Query: 1122 T-PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
T P FD MD+QMP MDG QAT +IR + L +PIL
Sbjct: 1453 TQQPDAFDIIIMDIQMPVMDGLQATREIRAVPV--------------------LAALPIL 1492
Query: 1181 AMTADVIQASNEQCMKCGMDDYVSKPFEDEQL 1212
AMTA+ A E C++ GM+D+V KP + +++
Sbjct: 1493 AMTANASHADREACLQAGMNDHVGKPIDIDEV 1524
>gi|350553870|ref|ZP_08923025.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349789580|gb|EGZ43527.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1327
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 193/630 (30%), Positives = 286/630 (45%), Gaps = 118/630 (18%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E++ + AE A AKS FLA +SHEIRTPMN +LGM + + T+L Q +Y + AH S
Sbjct: 571 ELLHARDAAEEATRAKSDFLANMSHEIRTPMNAILGMSHLALQTDLSPKQRNYIEKAHRS 630
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+ L+ L+ND+LD +KIE+G+L+ E PF L DV DN+ +L KA +KG+EL +S
Sbjct: 631 AESLLGLLNDILDFSKIEAGKLDIEQSPFRLEDVFDNLANLVGLKAGEKGLELLFDLSPE 690
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
+P +IGD R Q++TNL N++KFT G I + +A+D + V +
Sbjct: 691 LPTALIGDALRLGQVLTNLGNNAVKFTDPGGEILIRAVVAEDSPTAVRL----------- 739
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
H S V +T G + + +++F D+
Sbjct: 740 --HFS--VRDTGIGLSSGQQQRLFQSFTQADS---------------------------- 767
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906
ST+R YGGTG+GL+I + L LM G+I S G GSTF FTV +
Sbjct: 768 ------------STTRKYGGTGLGLAICKRLTALMDGKIWVESALGVGSTFHFTVRLGKQ 815
Query: 907 ERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSY 966
++ Q P LR LV+DD EV L V A S A
Sbjct: 816 RGHA-----SQRRPRSGVLPALRVLVVDDSPSAREVLSSMLTAFGFQVAQAASGAEAIDR 870
Query: 967 LSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS- 1025
L LVL+D W K G+ GL+ +R + + L+ +
Sbjct: 871 LETAAQEQAFD---LVLMD---W-KMPGM------------DGLDTARAIARDHLITQAP 911
Query: 1026 ----ISETDRDE-LKSD---GIVTLLTKPLRLSVLIGCFQED------PESSKKLQQKRK 1071
++ RDE L++ + LTKP+ S L+ P++ Q
Sbjct: 912 TVIMVTAYGRDEALRAADDLDLAGFLTKPVTPSTLLDAMLLAMVHALVPDTRAADLQGET 971
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
+L L G IL+V+DN +N+ +A L +G + + GR A++ L FD
Sbjct: 972 AEALAKLC-GAHILLVEDNPINQELALELLTTNGMSASVANNGREALE-LLQAQRFDGVL 1029
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQAS 1190
MD QMP MDG+QA IR W +P+LAMTA+V+
Sbjct: 1030 MDCQMPVMDGYQAARAIRADPR---------------------WRDLPVLAMTANVMAGD 1068
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
E+ + GM+D++ KP + ++ TA+AR+
Sbjct: 1069 REKALAAGMNDHIGKPVKVREMLTAMARWI 1098
>gi|110596980|ref|ZP_01385270.1| PAS [Chlorobium ferrooxidans DSM 13031]
gi|110341667|gb|EAT60127.1| PAS [Chlorobium ferrooxidans DSM 13031]
Length = 999
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 180/610 (29%), Positives = 289/610 (47%), Gaps = 101/610 (16%)
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLA +SHEIRTPMNGV+GM +L++T L Q +Y + + SG++L+ +IND+LD +
Sbjct: 344 KSQFLANMSHEIRTPMNGVIGMADLLLETRLSTDQRNYVEIINGSGRNLLKIINDILDFS 403
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIE+ LE + + F L D+L+ + + +A KG+EL + +P + GDP R RQI
Sbjct: 404 KIEARMLELDAIDFDLFDLLEEICGVLGLEARDKGLELLLITGFDLPFSLKGDPARIRQI 463
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGF 801
+ NL+GN+++FT + G + + V VQ ++D+ N + F
Sbjct: 464 LVNLIGNALRFTPEGGEVVLKVM----------------------VQQQTDR--NAVIRF 499
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
V DTG+GI + +IF PF QAD S
Sbjct: 500 -------------------------------NVRDTGIGISADKLQKIFEPFTQADGSNI 528
Query: 862 RTYGGTGIGLSISRCLV-ELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
R +GGTG+GLSIS LV ++ GG I SEPG+G++F F V E+ L ++ +P
Sbjct: 529 RKFGGTGLGLSISNDLVLKMGGGGIHVESEPGSGASFWFDVNL---EKQPLQKEYS--LP 583
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSM---QLACSYLSDTCSTSVLP 977
G LVI R+ R L L + +S + A Y+ + + S P
Sbjct: 584 GKERLLGKGVLVIS----RSPSLRTMLVSLLDSWGALSSQADDREAVRYVLEQAAKSPSP 639
Query: 978 QLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSD 1037
++L+D + KE + + G+ + I L+ E + + D
Sbjct: 640 -CGVILLDVEFIKKETAALNALLDAMPYAADGIRV------ILLVPIGYQEEMKKQF-GD 691
Query: 1038 GIVTLLTKPLR----LSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK---QILVVDDN 1090
I L KP+R ++ F + E++ + + + S G + K +L+ +D+
Sbjct: 692 RIFRFLQKPVRRRELCRMVAEAFDIEREATVEPEYESNVSSGGAVTPEKLPLHVLLAEDS 751
Query: 1091 MVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRH 1150
+VN++VA L K G GR A+D + +D FMD QMPE+DG++ T +IR
Sbjct: 752 VVNQKVALSMLGKLGCFPDVAANGREAIDAMRQKR-YDLVFMDCQMPEIDGYEVTRRIRK 810
Query: 1151 LENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDE 1210
+ + +P++AMTA+ ++ E+C+ GMDD+++KP +
Sbjct: 811 DHSLLCSP-----------------DIPVVAMTANAMKGDREKCIDAGMDDFMAKPLKKS 853
Query: 1211 QLYTAVARFF 1220
R+F
Sbjct: 854 DFQAIFERYF 863
>gi|383758181|ref|YP_005437166.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus IL144]
gi|381378850|dbj|BAL95667.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus IL144]
Length = 1180
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 180/614 (29%), Positives = 280/614 (45%), Gaps = 113/614 (18%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS FLA +SHEIRTPMN ++G+ +L ++ Q + K L+ +IND+LD
Sbjct: 532 AKSTFLANMSHEIRTPMNAIIGLTHLLARDARESLQRSRLAKIDVAAKHLLQIINDILDL 591
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
++I++G+++ E F L DVL+ + + + +A +K +EL + D PE + GDP R Q
Sbjct: 592 SRIDAGKMQLEDTEFLLDDVLERAMEMVTQRAREKDLELVVDTRD-TPERLRGDPTRLTQ 650
Query: 741 IITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSG 800
+ NL+ N++KFT A +R V+V ++ ++ L
Sbjct: 651 ALINLLANAVKFTA-----------AGWIRLDVEVVERAAQEVL---------------- 683
Query: 801 FPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860
L V+DTGVGI E +F+ F QADS+T
Sbjct: 684 -----------------------------LRFRVQDTGVGIAGEVLPTLFSAFQQADSTT 714
Query: 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920
+R +GGTG+GL+++R L LMGG++G S PG GSTF FT EG + +
Sbjct: 715 TRRFGGTGLGLALTRHLSGLMGGDVGVESRPGAGSTFWFTARLREG-------PAPEALS 767
Query: 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLA 980
+ G RAL++DD L RL + V A +++D
Sbjct: 768 GAERWSGRRALLVDDLPESLHALGDALTRLGLDVVAFADPAAAVEHVADEAGHEAPRAYD 827
Query: 981 LVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA---TSISETDRDELKSD 1037
++++D W +G + + R L +R P + + A ++ + RD
Sbjct: 828 VLMLD---W--RMGPPDGF--QTLARLTALLGARRPPAVLVTAHDEDALQQRARDA---- 876
Query: 1038 GIVTLLTKPLRLS----VLIGCFQ-------EDPESSKKLQQKRKKPSLGHLLKGKQILV 1086
G +L KP+ S L+G F+ E P + + LGH G+++L+
Sbjct: 877 GFGAVLLKPITASSLHDALVGMFRPPVTEPAEPPSGPDRRSDVESRLRLGH--AGRRVLL 934
Query: 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW 1146
+DN +NR VA L G +V + GR AV + FD MD+QMP MDG +AT
Sbjct: 935 AEDNPINREVAVELLSSVGLVVRTAEDGREAVSSVL-ADRFDLVLMDMQMPTMDGLKATR 993
Query: 1147 QIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206
+IR G +PI+AMTA+ E C+ GM+D+V+KP
Sbjct: 994 EIR---------------------AAGHRELPIIAMTANAFDEDREVCLAAGMNDHVAKP 1032
Query: 1207 FEDEQLYTAVARFF 1220
+ + LY A+ R+
Sbjct: 1033 VDPDDLYAALLRWL 1046
>gi|419960003|ref|ZP_14476050.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
cloacae GS1]
gi|388605014|gb|EIM34237.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
cloacae GS1]
Length = 919
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 185/627 (29%), Positives = 299/627 (47%), Gaps = 116/627 (18%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + +EL+ Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD+V++L + ++ KG+
Sbjct: 329 DHLHTIERSANNLLTIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + + VP+ VIGDP R +Q+ITNLVGN+IKFT+ G+I + V +KV ++
Sbjct: 389 ELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTE-SGNIDILVEKRALSNNKVQIEV 447
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++ + + G P D+ +
Sbjct: 448 QIRDTGI---------------GIPERDQTR----------------------------- 463
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+F F QAD+S SR +GGTG+GL I++ LV+ MGG+I F S+P GSTF
Sbjct: 464 -----------LFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P Q P +G+R ++ + A+ T + V
Sbjct: 513 WFHINL------DLNPNVQTDGPVTGCLKGMRLAYVEPNAAAAQCT----------LDVL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDV-WDKEIGLVLHYMLKQQRRKGGLEISRNL 1016
+S L Y S T S ++L+ V + E+ + QQ R L + ++
Sbjct: 557 SSTPLEVIY-SPTFSALANDHYDILLLGIPVTFTGELTM-------QQER---LAKAASM 605
Query: 1017 PKIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQED---PESSKKLQQKRKK 1072
LLA ++ + +ELK+DG L KPL + L+ E S L+ K
Sbjct: 606 TDYLLLALPCHAQINAEELKNDGAAACLLKPLTATRLLPALTEYCRLTHQSLPLENDEHK 665
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
+ ++ VDDN N ++ L+ V G AV++ FD M
Sbjct: 666 LPM-------TVMAVDDNPANLKLIGVLLEDQVQHVELCTSGAEAVEQ-AKQMQFDLILM 717
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+QMP MDG +A IR L ++ P++A+TA + E
Sbjct: 718 DIQMPGMDGIRACELIRQLPHQ--------------------QQTPVIAVTAHAMAGQKE 757
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARF 1219
+ + GM+DY++KP ++E+L++ + R+
Sbjct: 758 KLLGAGMNDYLAKPIDEEKLHSLLLRY 784
>gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74]
gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74]
Length = 1407
Score = 241 bits (616), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 202/629 (32%), Positives = 297/629 (47%), Gaps = 116/629 (18%)
Query: 597 RIAQVENDYHEMMELKAR--AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA 654
R+AQ ++E +AR AE A+ AKS FLAT+SHEIRTP+NGV+GM +L DT L
Sbjct: 872 RLAQ-----QSVLEQQARLEAETANKAKSVFLATMSHEIRTPLNGVIGMTALLEDTPLSE 926
Query: 655 AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQ 714
Q +YA T + G+ L+ +IND+LD +KIESG++E E P L L+ VL +F+ KA Q
Sbjct: 927 EQREYAHTIRSCGESLLGVINDILDFSKIESGKMELEQQPIELRSCLEEVLDMFAGKAGQ 986
Query: 715 KGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVD 774
G++L + VP ++GD R RQI+ NLVGN++KFT +G + V V L V
Sbjct: 987 TGLDLIYQIDPLVPPQILGDSLRLRQILINLVGNAVKFTH-QGEVMVGVQL-------VA 1038
Query: 775 VK-DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVT 833
V+ D+ +E + V +T G P + ++ F +D
Sbjct: 1039 VRPDQAVELAFT--------VRDTGIGIPGSKIGQLFKAFSQVD---------------- 1074
Query: 834 VEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGT 893
SS SR YGGTG+GL IS+ L+ELMGG I SE G
Sbjct: 1075 ------------------------SSHSRQYGGTGLGLIISQRLIELMGGVIRVESEVGK 1110
Query: 894 GSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
G+ F FT+ GE + K Y P S G L++DD R L+ +
Sbjct: 1111 GTAFRFTLVCQTGE----EKKPAAYGPQ-SAIAGKSVLIVDDNGASQSALRTQLECWHLR 1165
Query: 954 VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
+A S + A ++ L++ID+ + + + G+ L EI
Sbjct: 1166 PTLAGSGREALVIIAQHGP------FDLIIIDQQMPEMD-GIEL-----------AGEIK 1207
Query: 1014 RNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE--DPESSKKLQQKRK 1071
R+ P I L+ S R + +D ++TKP+ + L Q+ P+ + LQ +
Sbjct: 1208 RSYPTIPLILLSWVGDQRRKKHADLFSGMITKPIHYNHLGQSVQQALTPQENTSLQPTDR 1267
Query: 1072 KPSLGHLLKGK----QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF 1127
S + + QIL+ +DN +N ++ L K G T + G+ + +L F
Sbjct: 1268 SKSAYKVDFARQYPLQILIAEDNPINVKLLVRVLNKLGYSPTVANNGQEVLSRLH--EGF 1325
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
D MD+QMPEMDG +AT IR + I + W I+A+TAD +
Sbjct: 1326 DLILMDIQMPEMDGLEATRLIR--QQAIRQP----------------W---IIALTADAM 1364
Query: 1188 QASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
E C+ GM+DY+SKP QL A+
Sbjct: 1365 LEDRELCLAVGMNDYMSKPPVLSQLTKAL 1393
>gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
Length = 1238
Score = 241 bits (616), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 183/613 (29%), Positives = 291/613 (47%), Gaps = 105/613 (17%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E K AE A++ KS+FLA +SHEIRTPMN ++GMLQ+ T L A Q DY + A S
Sbjct: 708 LLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDYLEKAGFSA 767
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+G+LE E VPF L VLD+ L L + KA ++G+EL +Y
Sbjct: 768 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTA 827
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSV 787
++ GDP R Q++ NL+ N++KFTQ G I + + ++ +K V + +
Sbjct: 828 GLILKGDPLRLGQVLINLLSNAVKFTQ-SGEIELGCEDVGERDHRITLKFWVRDTGIGIG 886
Query: 788 QHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847
+ + DK+++ F D + T
Sbjct: 887 KDQQDKLFDA---------------FAQADGSTT-------------------------- 905
Query: 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R YGGTG+GLSIS+ LV +MGG++ SE G GSTFSFT++F E
Sbjct: 906 --------------RKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTISFEIAE 951
Query: 908 RNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967
++P VP+ + LR LV+DD ++ ++ V A S A L
Sbjct: 952 AAKIEPF---VVPE--KLNSLRTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKL 1006
Query: 968 SDTCSTSVLPQLALVLID---KDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLAT 1024
S + L+L+D ++ ++ + M+ + R P I ++
Sbjct: 1007 SRAP-------IDLLLLDWMMPEMDGSDVVSAIDTMVAEGRLA-------KRPVIIMMTA 1052
Query: 1025 SISETDRDELKSDGIVTLLTKPLRLSVL----IGCFQEDPESSKKLQQKRKKPSLGHLLK 1080
+E + E+ S + +L KP + S L I F ++P + + Q + +
Sbjct: 1053 YAAEPLQHEVDSANVFAVLQKPFKASSLFDEIIAAFADEPRLN--VVQPMVEVQVEDGEH 1110
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+L+V+DN +N++VA LK G V G+ A+D + FDA MD+QMP MD
Sbjct: 1111 TGLVLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTID-SRPFDAVLMDIQMPVMD 1169
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G A +R E+ ++ E +PI+AMTA + E+ + GM+
Sbjct: 1170 GLTAARALR-------ERFSADE-------------LPIIAMTAHAMSGDREKSLAAGMN 1209
Query: 1201 DYVSKPFEDEQLY 1213
+++KP +L+
Sbjct: 1210 AHITKPIVLNELF 1222
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,706,453,654
Number of Sequences: 23463169
Number of extensions: 780446067
Number of successful extensions: 2892534
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 41714
Number of HSP's successfully gapped in prelim test: 59113
Number of HSP's that attempted gapping in prelim test: 2587417
Number of HSP's gapped (non-prelim): 225254
length of query: 1223
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 1069
effective length of database: 8,745,867,341
effective search space: 9349332187529
effective search space used: 9349332187529
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 83 (36.6 bits)