BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000920
(1223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4J|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4K|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4K|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4L|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4L|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4O|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4O|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4Q|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4Q|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4S|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4S|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4T|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
pdb|3T4T|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
Length = 270
Score = 357 bits (917), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 176/276 (63%), Positives = 214/276 (77%), Gaps = 15/276 (5%)
Query: 293 LRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERT 352
+RR+E L SMCD+RARMLQDQF+VS+NHVHALAILVSTFH+ K+PSA+DQ+TF EYT RT
Sbjct: 7 IRREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTART 66
Query: 353 AFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEY 412
AFERPL SGVAYA KV++ ERE FE+QH W IK M+ + P+PV+DEY
Sbjct: 67 AFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGE-------------PSPVRDEY 113
Query: 413 APVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVY 472
APVIFSQ++VS++ S+DMMSG+EDRENILRAR +GK VLT PF+LL+++HLGVVLTF VY
Sbjct: 114 APVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVY 173
Query: 473 NTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINM 532
+ LP++ T E+RI AT GYLG ++DV SLVE LL QLA Q IVV+VYD TNAS P+ M
Sbjct: 174 KSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVM 233
Query: 533 YG--PDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQK 566
YG + D L S LDFGDP RKH+M CR+ QK
Sbjct: 234 YGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQK 269
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 79 CEKKAQIFLQHSNVSHNQLHALATLFSES---------DQIASLKCTREPGSGMLLHNGI 129
C+++A++ +VS N +HALA L S DQ + T L +G+
Sbjct: 17 CDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGV 76
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVED 164
A KV +++ F++Q W+ + + + + PV D
Sbjct: 77 AYAEKVVNFEREMFERQHNWVIKTMDRGEPSPVRD 111
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With Mg2+
Length = 206
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 40/157 (25%)
Query: 1067 QQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAA-------- 1117
+Q+ KPS L+GK++LVVDDN ++R+VA G LKK G + V D G+ A
Sbjct: 47 EQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGL 106
Query: 1118 --------VDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMF 1169
VDKL FD FMD QMPEMDG++AT +IR +E +
Sbjct: 107 TQREEQGSVDKLP----FDYIFMDCQMPEMDGYEATREIRKVEKS--------------Y 148
Query: 1170 GNVGLWHVPILAMTA-DVIQASNEQCMKCGMDDYVSK 1205
G PI+A++ D + ++ GMD ++ K
Sbjct: 149 G----VRTPIIAVSGHDPGSEEARETIQAGMDAFLDK 181
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 7/144 (4%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+IL+V+DN +N VA+ +K+ G + + G A+ + ++D MD+ MP +DG
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINS-SSYDLVLMDVCMPVLDGL 68
Query: 1143 QATWQIRHLE--NEINEQIASG----ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
+AT IR E N I +G S E +PI+AMTA+ + S+E+C
Sbjct: 69 KATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECYA 128
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
GMD ++SKP ++L + ++
Sbjct: 129 NGMDSFISKPVTLQKLRECLQQYL 152
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 69/150 (46%), Gaps = 29/150 (19%)
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
+ L+++D I V + +++L + +AN+ A + ++ + VL + + ++D
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINSSSYDLVLMDVCMPVLD--- 66
Query: 989 WDKEIGLVLHYMLKQQRRKG--------GLEISRN------------LPKIFLLATSISE 1028
GL +++ G G++IS + LP I + A +++E
Sbjct: 67 -----GLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAE 121
Query: 1029 TDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058
+ +E ++G+ + ++KP+ L L C Q+
Sbjct: 122 SS-EECYANGMDSFISKPVTLQKLRECLQQ 150
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 26/142 (18%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDC-GRAAVDKL----TPPHNFDACFMDLQMP 1137
+ILVV+DN VN+ V + L G + C G+ A DK+ + N++ FMD+QMP
Sbjct: 4 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 63
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
++DG +T IR ++G + PI+A+TA ++ ++C++
Sbjct: 64 KVDGLLSTKMIRR--------------------DLG-YTSPIVALTAFADDSNIKECLES 102
Query: 1198 GMDDYVSKPFEDEQLYTAVARF 1219
GM+ ++SKP + +L T + F
Sbjct: 103 GMNGFLSKPIKRPKLKTILTEF 124
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 26/142 (18%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDC-GRAAVDKL----TPPHNFDACFMDLQMP 1137
+ILVV+DN VN+ V + L G + C G+ A DK+ + N++ FMD+QMP
Sbjct: 3 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 62
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
++DG +T IR ++G + PI+A+TA ++ ++C++
Sbjct: 63 KVDGLLSTKMIRR--------------------DLG-YTSPIVALTAFADDSNIKECLES 101
Query: 1198 GMDDYVSKPFEDEQLYTAVARF 1219
GM+ ++SKP + +L T + F
Sbjct: 102 GMNGFLSKPIKRPKLKTILTEF 123
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 63.2 bits (152), Expect = 9e-10, Method: Composition-based stats.
Identities = 70/280 (25%), Positives = 116/280 (41%), Gaps = 69/280 (24%)
Query: 613 ARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE-LDAAQLDYAQTAHNSGKDLI 671
A AEA + K F+ VS+E+RTP+ ++G ++L + + ++ + L
Sbjct: 32 ALAEAERL-KRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLA 90
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
I+DVLD A+I++G + E + D+L N A G+ LA+ + V ++
Sbjct: 91 RSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDV-GLI 149
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAXXXXXXXXXXXXXLEKSLNSVQHKS 791
GD R Q + +LV N+++ T G + +S ++L V+
Sbjct: 150 RGDGKRLAQTLDHLVENALRQTPPGGRVTLSA-----------------RRALGEVR--- 189
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
LD ++T GR GV ++A IF
Sbjct: 190 ------------------------LDVSDT----GR----------GVPFHVQAH--IFD 209
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
F+ D GG G+GL++ + LVEL GG + SEP
Sbjct: 210 RFVGRDR------GGPGLGLALVKALVELHGGWVALESEP 243
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
+L+ VED G+GIP A+ RIF F + DSS + GTG+GL+I++ +VEL GG I S
Sbjct: 174 VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVES 233
Query: 890 E 890
E
Sbjct: 234 E 234
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT--ELDAAQL-DYAQTAHNSGKDL 670
R + D K++F+A +SHE+RTP+ + + + ++ ELD + L ++ + + L
Sbjct: 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHL 71
Query: 671 ISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV 730
+L+N++LD +++E L+ L D++++ ++ A+ + + + P
Sbjct: 72 ENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVE 131
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQ 754
DP R RQ++ NL+ N +K+++
Sbjct: 132 AYIDPTRIRQVLLNLLNNGVKYSK 155
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
+L+ VED G+GIP A+ RIF F + DSS + GTG+GL+I++ +VEL GG I S
Sbjct: 174 VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVES 233
Query: 890 E 890
E
Sbjct: 234 E 234
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT--ELDAAQL-DYAQTAHNSGKDL 670
R + D K++F+A +SHE+RTP+ + + + ++ ELD + L ++ + + L
Sbjct: 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHL 71
Query: 671 ISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV 730
+L+N++LD +++E L+ L D++++ ++ A+ + + + P
Sbjct: 72 ENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVE 131
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQ 754
DP R RQ++ NL+ N +K+++
Sbjct: 132 AYIDPTRIRQVLLNLLNNGVKYSK 155
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver Domain
Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 60.1 bits (144), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 21/133 (15%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+ +DN + R VA AL+K +T V G A+ FD MD+QMP MDG +
Sbjct: 13 VLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-RQFDVIIMDIQMPVMDGLE 71
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
A +IR+ E N + AS I+A+TAD I ++ +D+YV
Sbjct: 72 AVSEIRNYERTHNTKRAS-----------------IIAITADTI---DDDRPGAELDEYV 111
Query: 1204 SKPFEDEQLYTAV 1216
SKP QL V
Sbjct: 112 SKPLNPNQLRDVV 124
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc
Length = 143
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 19/144 (13%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
++ ++LV DD+ NR V + L+K G V CV+ +D + ++DA +DL MP
Sbjct: 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA-EEDYDAVIVDLHMPG 70
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
M+G Q+R ++ G+ + P++ ++ADV + C + G
Sbjct: 71 MNGLDMLKQLRVMQAS------------------GMRYTPVVVLSADVTPEAIRACEQAG 112
Query: 1199 MDDYVSKPFEDEQLYTAVARFFMS 1222
+++KP +L +A +S
Sbjct: 113 ARAFLAKPVVAAKLLDTLADLAVS 136
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/265 (25%), Positives = 109/265 (41%), Gaps = 74/265 (27%)
Query: 624 QFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL--DYAQTAHNSGKDLISLINDVLDQA 681
+ A V+HEIR P+ ++G M M LD + Y N L +++ ++L+ +
Sbjct: 134 EMTARVAHEIRNPIT-IIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYS 192
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
K R EF F+L++++ V LF K + I+ + +D V D R +Q+
Sbjct: 193 K---ERQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFC-FETDNEDLRVEADRTRIKQV 248
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLAXXXXXXXXXXXXXLEKSLNSVQHKSDKVYNTLSGF 801
+ NLV N+I+ T + G I ++ S+ +Y +
Sbjct: 249 LINLVQNAIEATGENGKIKIT----------------------------SEDMYTKVR-- 278
Query: 802 PVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS 861
V W S G IP E + +IF+PF T+
Sbjct: 279 --VSVWNS----------------------------GPPIPEELKEKIFSPFF-----TT 303
Query: 862 RTYGGTGIGLSISRCLVE-LMGGEI 885
+T GTG+GLSI R ++E GG+I
Sbjct: 304 KTQ-GTGLGLSICRKIIEDEHGGKI 327
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 23/124 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
ILVVDD+ +NRR+ L G + G A++ L+ H D D+ MP MDG++
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLSDVNMPNMDGYR 190
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
T +IR L GL +P++ +TA+ + ++C++ GMD +
Sbjct: 191 LTQRIRQL---------------------GL-TLPVIGVTANALAEEKQRCLESGMDSCL 228
Query: 1204 SKPF 1207
SKP
Sbjct: 229 SKPV 232
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 23/123 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
ILVVDD+ +NRR+ L G + G A++ L+ H D D+ MP MDG++
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLSDVNMPNMDGYR 69
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
T +IR L GL +P++ +TA+ + ++C++ GMD +
Sbjct: 70 LTQRIRQL---------------------GL-TLPVIGVTANALAEEKQRCLESGMDSCL 107
Query: 1204 SKP 1206
SKP
Sbjct: 108 SKP 110
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 818 NTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCL 877
+ N E+L L ++V+D G+GIP + ++F F + D + +R GGTG+GL+I++ +
Sbjct: 70 DVNEEEEL----LYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEM 125
Query: 878 VELMGGEI 885
V+ GG+I
Sbjct: 126 VQAHGGDI 133
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A Novel
Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A Novel
Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A Novel
Cis- Autophosphorylation Mechanism
Length = 122
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 23/136 (16%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K++L+VDD+ V R++ LKK G V + G+ A++KL+ D +D+ MP MDG
Sbjct: 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-EFTPDLIVLDIMMPVMDG 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKCGMD 1200
F +++ E W +P++ +TA + + G
Sbjct: 62 FTVLKKLQEKEE---------------------WKRIPVIVLTAKGGEEDESLALSLGAR 100
Query: 1201 DYVSKPFEDEQLYTAV 1216
+ KPF Q V
Sbjct: 101 KVMRKPFSPSQFIEEV 116
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk. Structure
At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 21/139 (15%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K++L+V+DN +N ++ L+ G G +A+ + + D MD+Q+PE+ G
Sbjct: 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSAL-SIARENKPDLILMDIQLPEISG 60
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ T ++ ++ L H+P++A+TA ++ E+ + G +
Sbjct: 61 LEVTKWLKEDDD--------------------LAHIPVVAVTAFAMKGDEERIREGGCEA 100
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
Y+SKP + R
Sbjct: 101 YISKPISVVHFLETIKRLL 119
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA-AQLDYAQTAHNSGKDLIS 672
RAE + A + A++SHEIR P+ G +Q++ + L A + YA+ A +
Sbjct: 7 RAEKME-AVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEA 65
Query: 673 LINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVI 732
+I D L AK PE + L ++ V+ + AN +++ ++ P VI
Sbjct: 66 IITDYLTFAK--PAPETPEKLNVKLE--IERVIDILRPLANMSCVDIQATLA---PFSVI 118
Query: 733 GDPGRFRQIITNLVGNSIKFTQDKG--HIFVSV 763
G+ +FRQ + N++ N+I+ + G ++VS+
Sbjct: 119 GEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSI 151
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
++L+ + DTGVG+ E R+ P+ T++ GTG+G+ + ++E M G I
Sbjct: 155 RVLIRIADTGVGMTKEQLERLGEPYF-----TTKGVKGTGLGMMVVYRIIESMNGTIRIE 209
Query: 889 SE 890
SE
Sbjct: 210 SE 211
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 23/136 (16%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K++L+VDD+ V R++ LKK G V + G+ A++KL+ D + + MP MDG
Sbjct: 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-EFTPDLIVLXIMMPVMDG 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLW-HVPILAMTADVIQASNEQCMKCGMD 1200
F +++ E W +P++ +TA + + G
Sbjct: 62 FTVLKKLQEKEE---------------------WKRIPVIVLTAKGGEEDESLALSLGAR 100
Query: 1201 DYVSKPFEDEQLYTAV 1216
+ KPF Q V
Sbjct: 101 KVMRKPFSPSQFIEEV 116
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In Complex
With Bef3 And The Effect Of Ph On Bef3 Binding, Possible
Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 24/135 (17%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+IL+VDD + + + K G V GR A+++ D +DL +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP-DIIILDLMLPEIDG 60
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR + VPIL ++A + ++ G DD
Sbjct: 61 LEVAKTIRKTSS-----------------------VPILMLSAKDSEFDKVIGLELGADD 97
Query: 1202 YVSKPFEDEQLYTAV 1216
YV+KPF + +L V
Sbjct: 98 YVTKPFSNRELQARV 112
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD---KLTPPHNFDACFMDLQMPE 1138
K+ILVVDD + E L+K G V C G AV+ +L P D +D+ +P
Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP----DLILLDIMLPN 58
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
DG + ++R + +PI+ +TA + ++ G
Sbjct: 59 KDGVEVCREVRKK-----------------------YDMPIIMLTAKDSEIDKVIGLEIG 95
Query: 1199 MDDYVSKPFEDEQLYTAV 1216
DDYV+KPF +L V
Sbjct: 96 ADDYVTKPFSTRELLARV 113
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD---KLTPPHNFDACFMDLQMPE 1138
K+ILVVDD + E L+K G V C G AV+ +L P D +D+ +P
Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP----DLILLDIMLPN 58
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
DG + ++R + +PI+ +TA + ++ G
Sbjct: 59 KDGVEVCREVRKK-----------------------YDMPIIMLTAKDSEIDKVIGLEIG 95
Query: 1199 MDDYVSKPFEDEQLYTAV 1216
DDYV+KPF +L V
Sbjct: 96 ADDYVTKPFSTRELLARV 113
>pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The
Two-component System Transmitter Protein Nrii (ntrb)
Length = 160
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
R+ + VED G GIP Q +F P + S GGTG+GLSI+R L++ G+I
Sbjct: 89 RLAARIDVEDNGPGIPPHLQDTLFYPMV------SGREGGTGLGLSIARNLIDQHSGKIE 142
Query: 887 FVSEP 891
F S P
Sbjct: 143 FTSWP 147
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
G ++LV+D+N V+R V +G L G VT V + ++ H FMD+ MP ++
Sbjct: 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS--HEHKVVFMDVCMPGVE 64
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
+Q +I E F ++A++ + +++ E+CM G+D
Sbjct: 65 NYQIALRIH-----------------EKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLD 107
Query: 1201 DYVSKP 1206
+ KP
Sbjct: 108 GVLLKP 113
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
+S F GL+ LV+D+ + VT+ L L V +S ++ C V + +
Sbjct: 2 MSNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSS--------NEECLRVVSHEHKV 53
Query: 982 VLID---KDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDG 1038
V +D V + +I L +H +QR + P + L+ + ++ +++ S G
Sbjct: 54 VFMDVCMPGVENYQIALRIHEKFTKQRHQR--------PLLVALSGNTDKSTKEKCMSFG 105
Query: 1039 IVTLLTKPLRL 1049
+ +L KP+ L
Sbjct: 106 LDGVLLKPVSL 116
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 24/135 (17%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+IL+VDD + + + K G V GR A+++ D + L +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP-DIIILXLMLPEIDG 60
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR + VPIL ++A + ++ G DD
Sbjct: 61 LEVAKTIRKTSS-----------------------VPILMLSAKDSEFDKVIGLELGADD 97
Query: 1202 YVSKPFEDEQLYTAV 1216
YV+KPF + +L V
Sbjct: 98 YVTKPFSNRELQARV 112
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 25/134 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF-MDLQMPEMDGF 1142
+ VVDD+M R L+ G V DC ++ P + C +D++MP M G
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQH--GCLVLDMRMPGMSGI 64
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
E+ EQ+ + +PI+ +TA + MK G ++
Sbjct: 65 -----------ELQEQLTAISDG-----------IPIVFITAHGDIPMTVRAMKAGAIEF 102
Query: 1203 VSKPFEDEQLYTAV 1216
+ KPFE++ L A+
Sbjct: 103 LPKPFEEQALLDAI 116
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 26/148 (17%)
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM--DLQ 1135
L + K+ILVVDD+ E LK+ V G A KL+ F+ M DL
Sbjct: 3 LKQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS---TFEPAIMTLDLS 59
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP++DG +R +N++ Q P + + + + +A +Q +
Sbjct: 60 MPKLDGLDVIRSLR--QNKVANQ-------------------PKILVVSGLDKAKLQQAV 98
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
G DDY+ KPF+++ L + G
Sbjct: 99 TEGADDYLEKPFDNDALLDRIHDLVNEG 126
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter Pylori
Length = 129
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 21/135 (15%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
L ++LVVDD+ RR+ + L + G V + G A +KL + D MP
Sbjct: 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMP 62
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EM+G ++R ++ E +PI+ +TA+ +A +K
Sbjct: 63 EMNGLDLVKKVRS-DSRFKE-------------------IPIIMITAEGGKAEVITALKA 102
Query: 1198 GMDDYVSKPFEDEQL 1212
G+++Y+ KPF + L
Sbjct: 103 GVNNYIVKPFTPQVL 117
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 30/142 (21%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDK---LTPPHNFDACFMDLQM 1136
GK++L+VDD R + + + K G + GR AV+K L P D MD+ M
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP----DIVTMDITM 56
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PEM+G A +I ++ + S + A VI+A +K
Sbjct: 57 PEMNGIDAIKEIMKIDPNAKIIVCSA-----------------MGQQAMVIEA-----IK 94
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G D++ KPF+ ++ A+ +
Sbjct: 95 AGAKDFIVKPFQPSRVVEALNK 116
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 37/149 (24%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD--KLTPPHNFDACFMDLQMP 1137
+ +IL+V+D+ + L++ G V GR AV LT P D D+ MP
Sbjct: 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP---DLIISDVLMP 62
Query: 1138 EMDGFQ-ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASN 1191
EMDG+ W + G L +P++ +T DV+++
Sbjct: 63 EMDGYALCRW---------------------LKGQPDLRTIPVILLTILSDPRDVVRS-- 99
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
++CG DD+++KP +D L + V R
Sbjct: 100 ---LECGADDFITKPCKDVVLASHVKRLL 125
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 30/142 (21%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDK---LTPPHNFDACFMDLQM 1136
GK++L+VDD R + + + K G + GR AV+K L P D MD+ M
Sbjct: 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP----DIVTMDITM 57
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
PEM+G A +I ++ + S + A VI+A +K
Sbjct: 58 PEMNGIDAIKEIMKIDPNAKIIVCSA-----------------MGQQAMVIEA-----IK 95
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G D++ KPF+ ++ A+ +
Sbjct: 96 AGAKDFIVKPFQPSRVVEALNK 117
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 68/196 (34%)
Query: 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSI 750
EF F+L++++ V LF K + I+ + +D V D R +Q++ NLV N+I
Sbjct: 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFC-FETDNEDLRVEADRTRIKQVLINLVQNAI 60
Query: 751 KFTQDKGHIFVSVHLAXXXXXXXXXXXXXLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810
+ T + G I ++ S+ +Y + V W S
Sbjct: 61 EATGENGKIKIT----------------------------SEDMYTKVR----VSVWNS- 87
Query: 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIG 870
G IP E + +IF+PF T++T GTG+G
Sbjct: 88 ---------------------------GPPIPEELKEKIFSPFF-----TTKTQ-GTGLG 114
Query: 871 LSISRCLVE-LMGGEI 885
LSI R ++E GG+I
Sbjct: 115 LSICRKIIEDEHGGKI 130
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDDN RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 3 KFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWNMPNMDG 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 62 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 101
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 102 YVVKPFTAATLEEKLNKIF 120
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDDN RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 3 KFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWNMPNMDG 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L TA+ + + + G
Sbjct: 62 LELLKTIR----------ADGAMSA----------LPVLMTTAEAKKENIIAAAQAGASG 101
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 102 YVVKPFTAATLEEKLNKIF 120
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+ILVVDD N R+ E L V+ G A+ + D +D+ MP MDGF
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTAL-AMAARDLPDIILLDVMMPGMDGF 61
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
R L+++ + H+P++ +TA + Q ++ G D+
Sbjct: 62 TVC---RKLKDDPTTR-----------------HIPVVLITALDGRGDRIQGLESGASDF 101
Query: 1203 VSKPFEDEQLYTAV 1216
++KP +D L+ V
Sbjct: 102 LTKPIDDVMLFARV 115
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E.
Coli Osmosensor Envz
Length = 161
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 834 VEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG--EIG 886
VED G GI E + +F PF++ DS +RT GTG+GL+I + +V+ G E+G
Sbjct: 82 VEDDGPGIAPEQRKHLFQPFVRGDS--ARTISGTGLGLAIVQRIVDNHNGMLELG 134
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
LK K+IL+V+D+ + L K+G V G AAV+K++ D MD+++ E
Sbjct: 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGE 62
Query: 1139 -MDGFQATWQIRHL 1151
MDG Q I+ +
Sbjct: 63 GMDGVQTALAIQQI 76
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 22/144 (15%)
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTC-VDCGRAAVDKLTPPHNFDACFMDLQM 1136
L K +IL+VDD RR+ + L+ G T D G A+ L +FD D M
Sbjct: 9 LNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK-GDFDFVVTDWNM 67
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P M G IR E L H+P+L +TA+ + + +
Sbjct: 68 PGMQGIDLLKNIRADEE--------------------LKHLPVLMITAEAKREQIIEAAQ 107
Query: 1197 CGMDDYVSKPFEDEQLYTAVARFF 1220
G++ Y+ KPF L + + F
Sbjct: 108 AGVNGYIVKPFTAATLKEKLDKIF 131
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp
Length = 459
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+ILVVDD N R+ E L V+ G A+ + D +D+ MP MDGF
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTAL-AMAARDLPDIILLDVMMPGMDGF 62
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
R L+++ + H+P++ +TA + Q ++ G D+
Sbjct: 63 TVC---RKLKDDPTTR-----------------HIPVVLITALDGRGDRIQGLESGASDF 102
Query: 1203 VSKPFEDEQLYTAV 1216
++KP +D L+ V
Sbjct: 103 LTKPIDDVMLFARV 116
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of Heli
Pylori
Length = 129
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 21/135 (15%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
L ++LVVDD+ RR+ + L + G V + G A +KL + D MP
Sbjct: 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMP 62
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EM+G ++R ++ E +PI+ +T + +A +K
Sbjct: 63 EMNGLDLVKKVRS-DSRFKE-------------------IPIIMITTEGGKAEVITALKA 102
Query: 1198 GMDDYVSKPFEDEQL 1212
G+++Y+ KPF + L
Sbjct: 103 GVNNYIVKPFTPQVL 117
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From Bacillus
Subtilis
Length = 136
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 23/127 (18%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
K+ILVVDD + + L++ G V G A+ K D +D+ +P++D
Sbjct: 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKK-AETEKPDLIVLDVMLPKLD 61
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G + Q+R MF PIL +TA + ++ G D
Sbjct: 62 GIEVCKQLRQ--------------QKLMF--------PILMLTAKDEEFDKVLGLELGAD 99
Query: 1201 DYVSKPF 1207
DY++KPF
Sbjct: 100 DYMTKPF 106
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14 Replaced
By Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By
Gly
Length = 129
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 7 KFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 66 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 105
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 106 YVVKPFTAATLEEKLNKIF 124
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 29/134 (21%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL---TPPHNFDACFMDLQ 1135
L GKQIL+V+D V R + + GA G A++ L TP D D+
Sbjct: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP----DLMICDIA 60
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP M+G + IR+ ++ P+L ++A A + +
Sbjct: 61 MPRMNGLKLLEHIRNRGDQ----------------------TPVLVISATENMADIAKAL 98
Query: 1196 KCGMDDYVSKPFED 1209
+ G++D + KP +D
Sbjct: 99 RLGVEDVLLKPVKD 112
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17 Replaced
By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17 Replaced
By Gly (M17g)
Length = 130
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 8 KFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 66
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 67 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 106
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 107 YVVKPFTAATLEEKLNKIF 125
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF--------TPFMQADSSTSR 862
EN L + LG+ L + + D G G+PL R+F TP M D+S +
Sbjct: 251 ENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVM--DNSRNA 308
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVS 889
G G GL ISR + G++ S
Sbjct: 309 PLAGFGYGLPISRLYAKYFQGDLNLYS 335
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of
The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of
The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D +MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWRMPNMDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 66 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 105
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 106 YVVKPFTAATLEEKLNKIF 124
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D +MP MDG
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWRMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTAHAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF--------TPFMQADSSTSR 862
EN L + LG+ L + + D G G+PL R+F TP M D+S +
Sbjct: 251 ENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVM--DNSRNA 308
Query: 863 TYGGTGIGLSISRCLVELMGGEIGFVS 889
G G GL ISR + G++ S
Sbjct: 309 PLAGFGYGLPISRLYAKYFQGDLNLYS 335
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENVIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTPATLEEKLNKIF 123
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
Length = 129
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 66 LELLKTIR----------ADGAMSA----------LPVLMVTAEADAENIKALAQAGASG 105
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 106 YVVKPFTAATLEEKLNKIF 124
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And Dynamics
Of Chemotaxis Y Protein Using Three-And Four-Dimensional
Heteronuclear (13c,15n) Nmr Spectroscopy
Length = 128
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 66 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 105
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 106 YVVKPFTAATLEEKLNKIF 124
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 66 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 105
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 106 YVVKPFTPATLEEKLNKIF 124
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein In
Aqueous Solution By Nuclear Magnetic Resonance Methods
Length = 129
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 66 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 105
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 106 YVVKPFTAATLEEKLNKIF 124
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D +MP MDG
Sbjct: 6 KFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWKMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTAYAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed
With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed
With Bef3- And Mn2+
Length = 128
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTARAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter Pylori
Length = 129
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 21/135 (15%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
L ++LVVDD+ RR+ + L + G V + G A +KL + MP
Sbjct: 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITAWNMP 62
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
EM+G ++R ++ E +PI+ +T + +A +K
Sbjct: 63 EMNGLDLVKKVRS-DSRFKE-------------------IPIIMITTEGGKAEVITALKA 102
Query: 1198 GMDDYVSKPFEDEQL 1212
G+++Y+ KPF + L
Sbjct: 103 GVNNYIVKPFTPQVL 117
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWMMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTARAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 21/136 (15%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
++ILVV+D R + L+++G + +AV++L P D +D +P
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGGS 60
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G Q I+HL+ E + +P++ +TA + + ++ G D
Sbjct: 61 GIQF---IKHLKRESMTR-----------------DIPVVMLTARGEEEDRVRGLETGAD 100
Query: 1201 DYVSKPFEDEQLYTAV 1216
DY++KPF ++L +
Sbjct: 101 DYITKPFSPKELVARI 116
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 21/136 (15%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
++ILVV+D R + L+++G + +AV++L P D +D +P
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLDWMLPGGS 60
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G Q I+HL+ E + +P++ +TA + + ++ G D
Sbjct: 61 GIQF---IKHLKRESMTR-----------------DIPVVMLTARGEEEDRVRGLETGAD 100
Query: 1201 DYVSKPFEDEQLYTAV 1216
DY++KPF ++L +
Sbjct: 101 DYITKPFSPKELVARI 116
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 38.5 bits (88), Expect = 0.022, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 36/206 (17%)
Query: 1012 ISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRK 1071
+ R LP + +L ISE R+ G++ + K +S LQ
Sbjct: 71 LERGLP-VVILTADISEDKREAWLEAGVLDYVXK---------------DSRHSLQYAVG 114
Query: 1072 KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACF 1131
+L + ++LVVDD+ +R L+K V R A+ L
Sbjct: 115 LVHRLYLNQQIEVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATLEQHPAIRLVL 174
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
+D PE+DG +R E +Q+A I+ ++ + +
Sbjct: 175 VDYYXPEIDGISLVRXLR--ERYSKQQLA------------------IIGISVSDKRGLS 214
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVA 1217
+ +K G +D++++PFE E+L V+
Sbjct: 215 ARYLKQGANDFLNQPFEPEELQCRVS 240
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89q
Length = 132
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWDMPNMDG 68
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA + + + G
Sbjct: 69 LELLKTIR----------ADGAMSA----------LPVLMVTAQAKKENIIAAAQAGASG 108
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 109 YVVKPFTAATLEEKLNKIF 127
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89k
Length = 132
Score = 38.1 bits (87), Expect = 0.033, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWDMPNMDG 68
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA + + + G
Sbjct: 69 LELLKTIR----------ADGAMSA----------LPVLMVTAKAKKENIIAAAQAGASG 108
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 109 YVVKPFTAATLEEKLNKIF 127
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 37.7 bits (86), Expect = 0.036, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +T++ + + + G
Sbjct: 66 LELLKTIR----------ADGAMSA----------LPVLMVTSEAKKENIIAAAQAGASG 105
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 106 YVVKPFTAATLEEKLNKIF 124
>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
Length = 400
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 24/140 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKK--HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+LV++D R VA ALKK G+I+ D G+ AV L + D DLQM MDG
Sbjct: 6 VLVLEDEPFQRLVAVTALKKVVPGSILEAAD-GKEAVAILESCGHVDIAICDLQMSGMDG 64
Query: 1142 FQATWQIRH--LENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
+RH L +++ I S E PIL S +C+
Sbjct: 65 LAF---LRHASLSGKVHSVILSSEVD------------PILRQAT----ISMIECLGLNF 105
Query: 1200 DDYVSKPFEDEQLYTAVARF 1219
+ KPF E++ + R+
Sbjct: 106 LGDLGKPFSLERITALLTRY 125
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response Regulator
Of Bacterial Chemotaxis
Length = 128
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL F D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGFGFIICDWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A SA +P+L +TA+ + + + G
Sbjct: 65 LELLKTIR----------ADSAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 6 KFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWMMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTALAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 37.7 bits (86), Expect = 0.041, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL F D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGFGFIISDWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A SA +P+L +TA+ + + + G
Sbjct: 65 LELLKTIR----------ADSAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 37.7 bits (86), Expect = 0.042, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWDMPNMDG 68
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA + + + G
Sbjct: 69 LELLKTIR----------ADGAMSA----------LPVLMVTARAKKENIIAAAQAGASG 108
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 109 YVVKPFTAATLEEKLNKIF 127
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 37.7 bits (86), Expect = 0.043, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL F D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGFGFIISDWNMPNMDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A SA +P+L +TA+ + + + G
Sbjct: 66 LELLKTIR----------ADSAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 105
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 106 YVVKPFTAATLEEKLNKIF 124
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli Phop
Length = 121
Score = 37.7 bits (86), Expect = 0.043, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 23/130 (17%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
++LVV+DN + R + ++ G V + + A D H D +DL +P+ DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDGL 60
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+ R N+++ +PIL +TA + + G DDY
Sbjct: 61 SLIRRWR--SNDVS--------------------LPILVLTARESWQDKVEVLSAGADDY 98
Query: 1203 VSKPFEDEQL 1212
V+KPF E++
Sbjct: 99 VTKPFHIEEV 108
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 37.4 bits (85), Expect = 0.050, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +T + + + + G
Sbjct: 66 LELLKTIR----------ADGAMSA----------LPVLMVTTEAKKENIIAAAQAGASG 105
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 106 YVVKPFTAATLEEKLNKIF 124
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 37.4 bits (85), Expect = 0.051, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +T + + + + G
Sbjct: 66 LELLKTIR----------ADGAMSA----------LPVLMVTVEAKKENIIAAAQAGASG 105
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 106 YVVKPFTAATLEEKLNKIF 124
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of Ntrc
Length = 124
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 29/138 (21%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR---AAVDKLTPPHNFDACFMDLQMPEMD 1140
+ VVDD+ R V E AL G T + G AA+ TP D D++MP MD
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP----DVLLSDIRMPGMD 61
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G QI+ + P++ MTA + + G
Sbjct: 62 GLALLKQIKQRHPML----------------------PVIIMTAHSDLDAAVSAYQQGAF 99
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
DY+ KPF+ ++ V R
Sbjct: 100 DYLPKPFDIDEAVALVER 117
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of Beryllofluoride-
Activated Ntrc Receiver Domain
Length = 124
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 29/138 (21%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR---AAVDKLTPPHNFDACFMDLQMPEMD 1140
+ VVDD+ R V E AL G T + G AA+ TP D D++MP MD
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP----DVLLSDIRMPGMD 61
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G QI+ + P++ MTA + + G
Sbjct: 62 GLALLKQIKQRHPML----------------------PVIIMTAHSDLDAAVSAYQQGAF 99
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
DY+ KPF+ ++ V R
Sbjct: 100 DYLPKPFDIDEAVALVER 117
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 29/138 (21%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR---AAVDKLTPPHNFDACFMDLQMPEMD 1140
+ VVDD+ R V E AL G T + G AA+ TP D D++MP MD
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP----DVLLSDIRMPGMD 61
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G QI+ + P++ MTA + + G
Sbjct: 62 GLALLKQIKQRHPML----------------------PVIIMTAHSDLDAAVSAYQQGAF 99
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
DY+ KPF+ ++ V R
Sbjct: 100 DYLPKPFDIDEAVALVER 117
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 37.4 bits (85), Expect = 0.058, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
+V KPF L + + F
Sbjct: 105 WVVKPFTAATLEEKLNKIF 123
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59 And
89: N59d E89y
Length = 132
Score = 37.4 bits (85), Expect = 0.059, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 10 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWDMPNMDG 68
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA + + + G
Sbjct: 69 LELLKTIR----------ADGAMSA----------LPVLMVTAYAKKENIIAAAQAGASG 108
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 109 YVVKPFTAATLEEKLNKIF 127
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus Radiodurans
Length = 249
Score = 37.0 bits (84), Expect = 0.063, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++ILV++D+ V L G +V D + K H D +DL +P+ DG
Sbjct: 38 QRILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGLIKAREDHP-DLILLDLGLPDFDG 96
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
++R ++SA +PI+ +TA + + G DD
Sbjct: 97 GDVVQRLR-------------KNSA----------LPIIVLTARDTVEEKVRLLGLGADD 133
Query: 1202 YVSKPFEDEQLYTAV 1216
Y+ KPF ++L V
Sbjct: 134 YLIKPFHPDELLARV 148
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 37.0 bits (84), Expect = 0.065, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWNMPNMDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +T + + + + G
Sbjct: 66 LELLKTIR----------ADGAMSA----------LPVLMVTMEAKKENIIAAAQAGASG 105
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 106 YVVKPFTAATLEEKLNKIF 124
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 37.0 bits (84), Expect = 0.065, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L + A+ + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVIAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 36.6 bits (83), Expect = 0.094, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 6 KFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU2|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU5|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU6|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU7|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU8|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
Length = 394
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 808 KSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGT 867
+S E+ +L M LG L + + D G G+PL R+F+ + GGT
Sbjct: 249 ESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGT 308
Query: 868 -----GIGLSISRCLVELMGGEIGFVS 889
G GL ISR + G++ S
Sbjct: 309 PLAGFGYGLPISRLYAKYFQGDLQLFS 335
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1
pdb|2Q8G|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Glucose-Lowering Drug Azd7545
pdb|2Q8H|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Dichloroacetate (Dca)
Length = 407
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 825 LGRIKLLVTVEDTGVGIPLEAQVRIFT------PFMQADSSTSRTYGGTGIGLSISRCLV 878
LG L V + D G G+PL R+F P + ++S + G G GL ISR
Sbjct: 278 LGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYA 337
Query: 879 ELMGGEIGFVS 889
+ G++ S
Sbjct: 338 QYFQGDLKLYS 348
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISXWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + MP MDG
Sbjct: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISXWNMPNMDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 66 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 105
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 106 YVVKPFTAATLEEKLNKIF 124
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A SA +P+L +TA+ + + + G
Sbjct: 65 LELLKTIR----------AXXAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of Chey
Length = 128
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISAWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of Chey
Length = 127
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 5 KFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 63
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 64 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 103
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 104 YVVKPFTAATLEEKLNKIF 122
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of Chey
Length = 130
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVV D RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 8 KFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGYGFVISDWNMPNMDG 66
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L +TA+ + + + G
Sbjct: 67 LELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENIIAAAQAGASG 106
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 107 YVVKPFTAATLEEKLNKIF 125
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 28/139 (20%)
Query: 1083 QILVVDDNM-VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+I VVDD+ + ++V+E L++ G + T + D L F +D+ +P+ G
Sbjct: 4 KIAVVDDDKNILKKVSE-KLQQLGRVKTFL----TGEDFLNDEEAFHVVVLDVXLPDYSG 58
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
++ I+ E W V +L + +D S + + G DD
Sbjct: 59 YEICRXIKETRPET-------------------W-VILLTLLSD--DESVLKGFEAGADD 96
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV+KPF E L V RF
Sbjct: 97 YVTKPFNPEILLARVKRFL 115
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 25/135 (18%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIV-TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++LVV+D + ALKK V C D L P FD +D+ +P DG
Sbjct: 4 RVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEP--FDVVILDIXLPVHDG 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
W+I E SG ++ P+L +TA + + G DD
Sbjct: 62 ----WEILKSXRE------SGVNT------------PVLXLTALSDVEYRVKGLNXGADD 99
Query: 1202 YVSKPFEDEQLYTAV 1216
Y+ KPF+ +L V
Sbjct: 100 YLPKPFDLRELIARV 114
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 821 TMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT------PFMQADSSTSRTYGGTGIGLSIS 874
T+ LG+ L + + D G G+PL R+F P + + + G G GL IS
Sbjct: 285 TLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPIS 344
Query: 875 RCLVELMGGEIGFVS 889
R G++ S
Sbjct: 345 RLYARYFQGDLKLYS 359
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 28/139 (20%)
Query: 1083 QILVVDDNM-VNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+I VVDD+ + ++V+E L++ G + T + D L F +D+ +P+ G
Sbjct: 4 KIAVVDDDKNILKKVSE-KLQQLGRVKTFL----TGEDFLNDEEAFHVVVLDVXLPDYSG 58
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
++ I+ E W V +L + +D S + + G DD
Sbjct: 59 YEICRXIKETRPET-------------------W-VILLTLLSD--DESVLKGFEAGADD 96
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV+KPF E L V RF
Sbjct: 97 YVTKPFNPEILLARVKRFL 115
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 25/135 (18%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIV-TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++LVV+D + ALKK V C D L P FD +D+ +P DG
Sbjct: 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDG 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
++ +R E+ +N P+L +TA + + G DD
Sbjct: 62 WEILKSMR--ESGVN--------------------TPVLMLTALSDVEYRVKGLNMGADD 99
Query: 1202 YVSKPFEDEQLYTAV 1216
Y+ KPF+ +L V
Sbjct: 100 YLPKPFDLRELIARV 114
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|1JM6|B Chain B, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|3CRK|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex
Length = 407
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 808 KSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGT 867
+S E+ L M LG L + + D G G+PL R+F+ + GGT
Sbjct: 262 ESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGT 321
Query: 868 -----GIGLSISRCLVELMGGEIGFVS 889
G GL ISR + G++ S
Sbjct: 322 PLAGFGYGLPISRLYAKYFQGDLQLFS 348
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 30/139 (21%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFDACFMDLQMPEMD 1140
++LVVDD + +LK G V G A+D+ T P DA +D+ P D
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP---DAVILDVXXPGXD 81
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
GF ++R A G + P L +TA + G D
Sbjct: 82 GFGVLRRLR----------ADGIDA------------PALFLTARDSLQDKIAGLTLGGD 119
Query: 1201 DYVSKPFEDEQLYTAVARF 1219
DYV+KPF E++ VAR
Sbjct: 120 DYVTKPFSLEEV---VARL 135
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At 1.86
A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At 1.86
A Resolution
Length = 136
Score = 35.0 bits (79), Expect = 0.25, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 23/134 (17%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNF-DACFMDLQMPE 1138
K +L+VDD+ E L+ G V G A+ ++ N DA D+ +P
Sbjct: 3 KPHTLLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIY--KNLPDALICDVLLPG 60
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
+DG+ ++R ++ + + + PIL +TA ++ + G
Sbjct: 61 IDGYTLCKRVR--QHPLTKTL------------------PILXLTAQGDISAKIAGFEAG 100
Query: 1199 MDDYVSKPFEDEQL 1212
+DY++KPFE ++L
Sbjct: 101 ANDYLAKPFEPQEL 114
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + D MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L + A+ + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVIAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
+V KPF L + + F
Sbjct: 105 WVVKPFTAATLEEKLNKIF 123
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 23/126 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L++DD+ V R L+ V G + ++ D DL+ P++DG +
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGL-QIFESEQPDLVICDLRXPQIDGLE 66
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
+IR +E PI+ ++ + + + ++ G DY+
Sbjct: 67 LIRRIRQTASE----------------------TPIIVLSGAGVMSDAVEALRLGAADYL 104
Query: 1204 SKPFED 1209
KP ED
Sbjct: 105 IKPLED 110
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 29/138 (21%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR---AAVDKLTPPHNFDACFMDLQMPEMD 1140
+ VVDD+ R V E AL G T + G AA+ TP D ++MP MD
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP----DVLLSXIRMPGMD 61
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G QI+ + P++ MTA + + G
Sbjct: 62 GLALLKQIKQRHPML----------------------PVIIMTAHSDLDAAVSAYQQGAF 99
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
DY+ KPF+ ++ V R
Sbjct: 100 DYLPKPFDIDEAVALVER 117
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 34.7 bits (78), Expect = 0.37, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
++ IL+V+D +V R + + G V G A + ++ ++ + MD+ +P
Sbjct: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDG-AEMHQILSEYDINLVIMDINLPG 59
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
+G L E+ EQ +V ++ +T + ++ G
Sbjct: 60 KNGLL-------LARELREQA----------------NVALMFLTGRDNEVDKILGLEIG 96
Query: 1199 MDDYVSKPFEDEQLYTAVARFFMS 1222
DDY++KPF +L T AR +S
Sbjct: 97 ADDYITKPFNPREL-TIRARNLLS 119
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
L + VED G GIPL + IF + D+ G G+GL+++R + E G+I
Sbjct: 75 LYIVVEDDGPGIPLSKREVIFDRGQRVDTLRP----GQGVGLAVAREITEQYEGKI 126
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex With
Chey6 From R. Sphaeroides
Length = 145
Score = 34.3 bits (77), Expect = 0.44, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 1084 ILVVDDNMVNRRVAEGALKK--HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+++VDD + R +K +V G+ A+DKL N D +D++MP MDG
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDG 75
Query: 1142 FQ 1143
+
Sbjct: 76 ME 77
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
++ILVV+ R + L+++G + +AV++L P D ++ +P
Sbjct: 2 ARRILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLEWMLPGGS 60
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G Q I+HL+ E + +P++ +TA + + ++ G D
Sbjct: 61 GIQF---IKHLKRESMTR-----------------DIPVVMLTARGEEEDRVRGLETGAD 100
Query: 1201 DYVSKPFEDEQLYTAV 1216
DY++KPF ++L +
Sbjct: 101 DYITKPFSPKELVARI 116
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISXWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L + A+ + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVIAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 105 YVVKPFTAATLEEKLNKIF 123
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
Length = 121
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 28/126 (22%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGA-IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+L+V+D RR AL+ G + R ++ T D +DL +P+ DG
Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGI 61
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWH-VPILAMTADVIQASNEQCMKCGMDD 1201
+ +R W VP++ ++A ++ + G DD
Sbjct: 62 EFIRDLRQ------------------------WSAVPVIVLSARSEESDKIAALDAGADD 97
Query: 1202 YVSKPF 1207
Y+SKPF
Sbjct: 98 YLSKPF 103
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 33.9 bits (76), Expect = 0.60, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 24/129 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+V+D L+K G T V G AA+ + D +DL +P M G
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA-GADIVLLDLMLPGMSGTD 65
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
Q+R SS VP++ +TA + ++ G DDYV
Sbjct: 66 VCKQLR------------ARSS-----------VPVIMVTARDSEIDKVVGLELGADDYV 102
Query: 1204 SKPFEDEQL 1212
+KP+ +L
Sbjct: 103 TKPYSAREL 111
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With Mg(2+)-
Bef (Wild Type)
Length = 116
Score = 33.5 bits (75), Expect = 0.79, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+ILVVDD R + + L++ G + + G A+ K N+D +D++MP + G
Sbjct: 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS-GNYDLVILDIEMPGISG 60
Query: 1142 FQATWQIR 1149
+ +IR
Sbjct: 61 LEVAGEIR 68
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 33.5 bits (75), Expect = 0.84, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 30/133 (22%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR---AAVDKLTPPHNFDACFMDLQMPE 1138
++ILVVDD+ + L+ G + G AV +L P D +DL +P
Sbjct: 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP----DLVLLDLMLPG 61
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
M+G +R SG VPI+ +TA ++ G
Sbjct: 62 MNGIDVCRVLR---------ADSG--------------VPIVMLTAKTDTVDVVLGLESG 98
Query: 1199 MDDYVSKPFEDEQ 1211
DDY+ KPF+ ++
Sbjct: 99 ADDYIMKPFKPKE 111
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 22/80 (27%)
Query: 1128 DACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI 1187
DA +D+ MP +DG +R ++N++ + S SS + D +
Sbjct: 53 DAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVD-----------------DRV 95
Query: 1188 QASNEQCMKCGMDDYVSKPF 1207
++ G DDY+ KPF
Sbjct: 96 AG-----LEAGADDYLVKPF 110
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAI--VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+++V DD+ + R AL G++ V D G AA++ L H D +D +MP MD
Sbjct: 17 RVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALE-LIKAHLPDVALLDYRMPGMD 75
Query: 1141 GFQATWQIRHLE 1152
G Q +R E
Sbjct: 76 GAQVAAAVRSYE 87
>pdb|3CGY|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGZ|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
Length = 157
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
L + VED G GIP + +F +AD+ G G+GL+++R + E G+I
Sbjct: 80 LHIFVEDDGPGIPHSKRSLVFDRGQRADTLRP----GQGVGLAVAREITEQYAGQI 131
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 15/74 (20%)
Query: 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEV-VIGDPGRFRQIITNLVGNSIKF------ 752
+LDN++S + +KG+ +++ +S PE+ +G+ F +++ N++ N+ K+
Sbjct: 14 LLDNLISALNKVYQRKGVNISMDIS---PEISFVGEQNDFVEVMGNVLDNACKYCLEFVE 70
Query: 753 -----TQDKGHIFV 761
T D HIFV
Sbjct: 71 ISARQTDDHLHIFV 84
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 25/136 (18%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+++L+ +D + R L++ G IV G+ AV+ L H D MD++MP D
Sbjct: 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVE-LAELHKPDLVIMDVKMPRRD 72
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G A +I +++IA PI+ +TA + E+ G
Sbjct: 73 GIDAASEI------ASKRIA-----------------PIVVLTAFSQRDLVERARDAGAM 109
Query: 1201 DYVSKPFEDEQLYTAV 1216
Y+ KPF L A+
Sbjct: 110 AYLVKPFSISDLIPAI 125
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 1084 ILVVDDNMVNRRVAEGALKK--HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+++VDD + R +K +V G+ A+DKL N D ++++MP MDG
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLNIEMPVMDG 75
Query: 1142 FQ 1143
+
Sbjct: 76 ME 77
>pdb|1XQH|A Chain A, Crystal Structure Of A Ternary Complex Of The
Methyltransferase Set9 (Also Known As Set79) WITH A P53
Peptide And Sah
pdb|1XQH|E Chain E, Crystal Structure Of A Ternary Complex Of The
Methyltransferase Set9 (Also Known As Set79) WITH A P53
Peptide And Sah
Length = 264
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 55 SICFLLSCDGGAFVGNEEEEGRMSCEKKAQIF 86
+C++ DGG+ VG E+G M+ EK A ++
Sbjct: 15 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVY 46
>pdb|4E47|A Chain A, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|B Chain B, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|C Chain C, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|D Chain D, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
Length = 264
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 55 SICFLLSCDGGAFVGNEEEEGRMSCEKKAQIF 86
+C++ DGG+ VG E+G M+ EK A ++
Sbjct: 9 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVY 40
>pdb|3CBM|A Chain A, Set79-Er-Adomet Complex
pdb|3CBO|A Chain A, Set7/9-er-adohcy Complex
pdb|3CBP|A Chain A, Set7/9-er-sinefungin Complex
pdb|3OS5|A Chain A, Set79-Dnmt1 K142me1 Complex
Length = 256
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 55 SICFLLSCDGGAFVGNEEEEGRMSCEKKAQIF 86
+C++ DGG+ VG E+G M+ EK A ++
Sbjct: 7 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVY 38
>pdb|2RDM|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
Length = 132
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 33/147 (22%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L+ IL+ DD + E L G +VT V G A++ L D D++ +
Sbjct: 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEXLKSGAAIDGVVTDIRFCQ 62
Query: 1139 -MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT--ADVIQASNEQCM 1195
DG WQ+ + EI+ + PI+ ++ A + ASN
Sbjct: 63 PPDG----WQVARVAREIDP------------------NXPIVYISGHAALEWASN---- 96
Query: 1196 KCGMDDYV--SKPFEDEQLYTAVARFF 1220
G+ D + KPF QL TAV++
Sbjct: 97 --GVPDSIILEKPFTSAQLITAVSQLL 121
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTP-PHNFDACFMDLQMPEMD 1140
++L+VDD + +R + AL++ G +T G + + PH+ D MP+MD
Sbjct: 8 KVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHL--VISDFNMPKMD 65
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G +R N + +TA +A ++ G +
Sbjct: 66 GLGLLQAVR--------------------ANPATKKAAFIILTAQGDRALVQKAAALGAN 105
Query: 1201 DYVSKPFEDEQLYTAVARFF 1220
+ ++KPF E++ A+ F
Sbjct: 106 NVLAKPFTIEKMKAAIEAVF 125
>pdb|2F69|A Chain A, Ternary Complex Of Set79 BOUND TO ADOHCY AND A TAF10
Peptide
pdb|3M53|A Chain A, Set79 IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
Length = 261
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 55 SICFLLSCDGGAFVGNEEEEGRMSCEKKAQIF 86
+C++ DGG+ VG E+G M+ EK A ++
Sbjct: 12 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVY 43
>pdb|3M57|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
pdb|3M58|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me1 Peptide And
Adohcy
pdb|3M59|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me2 Peptide And
Adohcy
pdb|3M5A|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me3 Peptide And
Adohcy
Length = 261
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 55 SICFLLSCDGGAFVGNEEEEGRMSCEKKAQIF 86
+C++ DGG+ VG E+G M+ EK A ++
Sbjct: 12 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVY 43
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 23/126 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L++DD+ V R L+ V G + ++ D DL+ P++DG +
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGL-QIFESEQPDLVICDLRXPQIDGLE 66
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
+IR +E PI+ ++ + + + ++ G DY+
Sbjct: 67 LIRRIRQTASE----------------------TPIIVLSGAGVXSDAVEALRLGAADYL 104
Query: 1204 SKPFED 1209
KP ED
Sbjct: 105 IKPLED 110
>pdb|1O9S|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
pdb|1O9S|B Chain B, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
Length = 259
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 55 SICFLLSCDGGAFVGNEEEEGRMSCEKKAQIF 86
+C++ DGG+ VG E+G M+ EK A ++
Sbjct: 10 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVY 41
>pdb|1N6C|A Chain A, Structure Of Set79
Length = 297
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 55 SICFLLSCDGGAFVGNEEEEGRMSCEKKAQIF 86
+C++ DGG+ VG E+G M+ EK A ++
Sbjct: 48 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVY 79
>pdb|3M54|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
pdb|3M55|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10-K189me1 Peptide And
Adohcy
pdb|3M56|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10-K189me2 Peptide And
Adohcy
Length = 261
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 55 SICFLLSCDGGAFVGNEEEEGRMSCEKKAQIF 86
+C++ DGG+ VG E+G M+ EK A ++
Sbjct: 12 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVY 43
>pdb|1MT6|A Chain A, Structure Of Histone H3 K4-Specific Methyltransferase
Set79 WITH ADOHCY
Length = 280
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 55 SICFLLSCDGGAFVGNEEEEGRMSCEKKAQIF 86
+C++ DGG+ VG E+G M+ EK A ++
Sbjct: 60 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVY 91
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 22/139 (15%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ LVVDD RR+ LK+ G V + G A++KL + MP MDG
Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISXWNMPNMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR A G SA +P+L + A+ + + + G
Sbjct: 65 LELLKTIR----------ADGAMSA----------LPVLMVIAEAKKENIIAAAQAGASG 104
Query: 1202 YVSKPFEDEQLYTAVARFF 1220
+V KPF L + + F
Sbjct: 105 WVVKPFTAATLEEKLNKIF 123
>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
Length = 293
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 55 SICFLLSCDGGAFVGNEEEEGRMSCEKKAQIF 86
+C++ DGG+ VG E+G M+ EK A ++
Sbjct: 66 GVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVY 97
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 22/86 (25%)
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
DL+MP+M G + + L+ I + +G M ++A
Sbjct: 54 DLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPM-----------------AVEA--- 93
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVAR 1218
MK G D++ KPFED + A+ R
Sbjct: 94 --MKAGAVDFIEKPFEDTVIIEAIER 117
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus Marisnigri
Jr1
Length = 138
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 25/135 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFDACFMDLQMPEMDG 1141
ILVVDD+ V L++ G G ++ L TPP D +D+ DG
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPP---DLVLLDIXXEPXDG 62
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ E E+I + ++ + +P+L +TA + ++D
Sbjct: 63 W-----------ETLERIKTDPATRD---------IPVLXLTAKPLTPEEANEYGSYIED 102
Query: 1202 YVSKPFEDEQLYTAV 1216
Y+ KP QLY A+
Sbjct: 103 YILKPTTHHQLYEAI 117
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 21/136 (15%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
++ILVV+D R + L+++G + +AV++L P D + +P
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLAWMLPGGS 60
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G Q I+HL+ E + +P++ +TA + + ++ G D
Sbjct: 61 GIQF---IKHLKRESMTR-----------------DIPVVMLTARGEEEDRVRGLETGAD 100
Query: 1201 DYVSKPFEDEQLYTAV 1216
D ++KPF ++L +
Sbjct: 101 DCITKPFSPKELVARI 116
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 20/88 (22%)
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D MP MDG + IR A G SA +P+L +TA+ + +
Sbjct: 56 DWNMPNMDGLELLKTIR----------ADGAMSA----------LPVLMVTAEAKKENII 95
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
+ G YV KPF L + + F
Sbjct: 96 AAAQAGASGYVVKPFTAATLEEKLNKIF 123
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With Mg(2+)-
Bef (Semet, L89m)
Length = 116
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+ILVVDD R + + L++ G + + G A+ K N+D +D++ P + G
Sbjct: 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF-SGNYDLVILDIEXPGISG 60
Query: 1142 FQATWQIR 1149
+ +IR
Sbjct: 61 LEVAGEIR 68
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 24/138 (17%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
++ILVV+D R + L+++G + +AV++L P D + +P
Sbjct: 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP-DLILLAWMLPGGS 60
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G Q I+HL E + +P++ +TA + + ++ G D
Sbjct: 61 GIQF---IKHLRRESMTR-----------------DIPVVMLTARGEEEDRVRGLETGAD 100
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
D ++KPF ++L VAR
Sbjct: 101 DCITKPFSPKEL---VAR 115
>pdb|1YS3|A Chain A, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YS3|B Chain B, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YS3|C Chain C, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|A Chain A, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|B Chain B, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|C Chain C, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
Length = 150
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
R + + ++D G G+P + +F F + +++ + G+G+GL++ +L GG
Sbjct: 75 RAGVEIAIDDNGSGVPEGERQVVFERFSRGSTAS---HSGSGLGLALVAQQAQLHGGTAS 131
Query: 887 FVSEP 891
+ P
Sbjct: 132 LENSP 136
>pdb|3JZ3|A Chain A, Structure Of The Cytoplasmic Segment Of Histidine Kinase
Qsec
pdb|3JZ3|B Chain B, Structure Of The Cytoplasmic Segment Of Histidine Kinase
Qsec
Length = 222
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 834 VEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF 887
V D G G+ EA RI F + T+ G+G+GLSI + + +L G + F
Sbjct: 150 VRDNGPGVTPEALARIGERFYRPPGQTAT---GSGLGLSIVQRIAKLHGXNVEF 200
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 25/140 (17%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
IL+V+D +V R + + G V G A ++ ++ + D+ +P +G
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDG-AEXHQILSEYDINLVIXDINLPGKNGL 63
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
L E+ EQ NV L + D I ++ G DDY
Sbjct: 64 L-------LARELREQ-----------ANVALXFLTGRDNEVDKILG-----LEIGADDY 100
Query: 1203 VSKPFEDEQLYTAVARFFMS 1222
++KPF +L T AR +S
Sbjct: 101 ITKPFNPREL-TIRARNLLS 119
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao Respiratory
System Response Regulator Torr
Length = 122
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 24/134 (17%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
I++V+D V + + + G V+ G A + ++ + D +D+ +P+ +G
Sbjct: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIXQNQSVDLILLDINLPDENGL 62
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
T +R E S V I+ +T + ++ G DDY
Sbjct: 63 XLTRALR-------------ERST----------VGIILVTGRSDRIDRIVGLEXGADDY 99
Query: 1203 VSKPFEDEQLYTAV 1216
V+KP E +L V
Sbjct: 100 VTKPLELRELVVRV 113
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHG--AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
I+ D NM+ + + + +K HG I+ D G A+ KL +N + +D++MP M G
Sbjct: 7 IIAEDQNMLRQAMVQ-LIKLHGDFEILADTDNGLDAM-KLIEEYNPNVVILDIEMPGMTG 64
Query: 1142 FQATWQIR 1149
+ +IR
Sbjct: 65 LEVLAEIR 72
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 1164 SSAEMFGNVG--LWHVPILAMTA--DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
S E+ N+G ++P + +T DV A + MK G D++ KPFED + A+ R
Sbjct: 61 SGVELLRNLGDLKINIPSIVITGHGDVPMAV--EAMKAGAVDFIEKPFEDTVIIEAIER 117
>pdb|3I42|A Chain A, Structure Of Response Regulator Receiver Domain (Chey-Like)
From Methylobacillus Flagellatus
Length = 127
Score = 30.0 bits (66), Expect = 8.7, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+Q L+V+D + L+ G V G A+ ++ +DA F+DL +P+ G
Sbjct: 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST-RGYDAVFIDLNLPDTSG 62
Query: 1142 FQATWQIRHLENEINEQIAS---------GESSAEMF 1169
Q+R L E + + G+ + E+F
Sbjct: 63 LALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELF 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,702,908
Number of Sequences: 62578
Number of extensions: 1322112
Number of successful extensions: 3484
Number of sequences better than 100.0: 147
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 3293
Number of HSP's gapped (non-prelim): 181
length of query: 1223
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1113
effective length of database: 8,089,757
effective search space: 9003899541
effective search space used: 9003899541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)