Query 000920
Match_columns 1223
No_of_seqs 749 out of 4460
Neff 6.4
Searched_HMMs 46136
Date Tue Apr 2 00:52:11 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11107 hybrid sensory histid 100.0 5.6E-60 1.2E-64 613.2 81.3 508 608-1221 279-786 (919)
2 PRK10841 hybrid sensory kinase 100.0 1.2E-57 2.5E-62 588.2 76.3 482 608-1221 433-918 (924)
3 KOG0519 Sensory transduction h 100.0 3.6E-60 7.9E-65 597.4 11.4 768 410-1221 4-785 (786)
4 PRK15347 two component system 100.0 2.5E-53 5.4E-58 551.5 73.9 427 608-1220 384-810 (921)
5 TIGR02956 TMAO_torS TMAO reduc 100.0 1.8E-53 3.9E-58 555.8 51.3 374 607-1221 449-822 (968)
6 PRK11091 aerobic respiration c 100.0 1.5E-53 3.2E-58 545.0 48.7 370 612-1221 273-644 (779)
7 PRK11466 hybrid sensory histid 100.0 1.8E-51 3.9E-56 534.2 52.3 371 605-1221 427-799 (914)
8 PRK09959 hybrid sensory histid 100.0 4.8E-47 1E-51 505.8 51.0 382 602-1220 692-1074(1197)
9 PRK10618 phosphotransfer inter 100.0 9.1E-44 2E-48 454.1 46.9 240 606-904 434-673 (894)
10 PRK13837 two-component VirA-li 100.0 1.4E-42 3E-47 446.2 52.2 364 620-1221 448-813 (828)
11 PRK13557 histidine kinase; Pro 100.0 9.1E-37 2E-41 371.7 46.9 367 621-1221 162-534 (540)
12 COG5002 VicK Signal transducti 100.0 2E-39 4.4E-44 355.1 18.0 226 620-905 223-450 (459)
13 PRK09303 adaptive-response sen 100.0 2.2E-35 4.7E-40 347.8 34.3 246 597-904 126-378 (380)
14 COG2205 KdpD Osmosensitive K+ 100.0 3.7E-35 8.1E-40 352.0 28.9 225 617-906 655-882 (890)
15 PRK11006 phoR phosphate regulo 100.0 2.2E-32 4.8E-37 326.9 31.0 221 621-904 203-424 (430)
16 PRK10604 sensor protein RstB; 100.0 1.3E-30 2.8E-35 312.2 37.1 224 612-905 202-425 (433)
17 TIGR02938 nifL_nitrog nitrogen 100.0 1.8E-30 3.8E-35 311.6 31.9 214 620-903 274-494 (494)
18 PRK10549 signal transduction h 100.0 9.5E-30 2.1E-34 305.8 36.8 232 611-905 229-460 (466)
19 PRK10815 sensor protein PhoQ; 100.0 1.5E-29 3.2E-34 307.2 38.0 218 617-904 261-479 (485)
20 PRK10364 sensor protein ZraS; 100.0 2.9E-29 6.3E-34 302.2 37.3 215 620-905 235-450 (457)
21 PRK10490 sensor protein KdpD; 100.0 3.1E-29 6.7E-34 323.4 36.5 223 618-905 660-884 (895)
22 PRK10755 sensor protein BasS/P 100.0 1.4E-28 3.1E-33 286.3 36.2 223 612-904 127-351 (356)
23 TIGR01386 cztS_silS_copS heavy 100.0 2.2E-28 4.7E-33 292.3 35.9 225 613-902 232-457 (457)
24 PRK09835 sensor kinase CusS; P 100.0 4.6E-28 9.9E-33 292.3 38.9 228 612-903 252-480 (482)
25 COG4251 Bacteriophytochrome (l 100.0 5.1E-29 1.1E-33 290.7 28.0 235 605-907 507-745 (750)
26 TIGR03785 marine_sort_HK prote 100.0 4.4E-28 9.5E-33 306.0 38.4 226 614-902 477-703 (703)
27 COG4191 Signal transduction hi 100.0 9E-26 1.9E-30 265.2 52.5 213 622-903 384-601 (603)
28 PRK10337 sensor protein QseC; 100.0 1.7E-27 3.7E-32 285.4 36.1 221 613-901 228-449 (449)
29 TIGR02966 phoR_proteo phosphat 100.0 4.5E-28 9.7E-33 275.7 29.2 219 621-901 113-333 (333)
30 PRK09470 cpxA two-component se 100.0 4.9E-27 1.1E-31 281.5 38.1 227 612-905 233-459 (461)
31 PRK09467 envZ osmolarity senso 100.0 7.7E-27 1.7E-31 278.4 35.0 218 610-904 217-434 (435)
32 COG3852 NtrB Signal transducti 100.0 1.9E-27 4.2E-32 258.8 24.8 223 620-905 130-356 (363)
33 PRK11100 sensory histidine kin 100.0 2.9E-26 6.2E-31 275.1 36.9 220 621-904 255-474 (475)
34 PRK11073 glnL nitrogen regulat 100.0 9.9E-27 2.1E-31 269.3 28.3 218 621-903 129-347 (348)
35 COG0642 BaeS Signal transducti 99.9 4.5E-25 9.7E-30 247.8 32.4 217 621-905 114-331 (336)
36 PRK11360 sensory histidine kin 99.9 1.6E-25 3.4E-30 275.1 30.7 215 621-905 389-603 (607)
37 PF03924 CHASE: CHASE domain; 99.9 8.7E-26 1.9E-30 241.6 15.9 186 337-535 2-193 (193)
38 PRK13560 hypothetical protein; 99.9 6.3E-25 1.4E-29 280.8 25.9 213 607-905 590-805 (807)
39 TIGR02916 PEP_his_kin putative 99.9 7.4E-24 1.6E-28 267.8 30.2 204 621-902 474-679 (679)
40 PRK11086 sensory histidine kin 99.9 2.3E-22 5.1E-27 246.1 24.8 196 623-906 340-538 (542)
41 COG3614 Predicted periplasmic 99.9 3.5E-21 7.6E-26 211.4 23.7 230 264-505 10-248 (348)
42 PRK15053 dpiB sensor histidine 99.9 4.7E-21 1E-25 235.8 27.8 197 624-905 340-541 (545)
43 PRK11644 sensory histidine kin 99.9 1.3E-20 2.8E-25 229.6 30.9 195 619-903 299-494 (495)
44 COG5000 NtrY Signal transducti 99.9 1.5E-20 3.2E-25 220.2 22.4 210 621-903 485-708 (712)
45 COG0745 OmpR Response regulato 99.8 3.3E-20 7.2E-25 203.8 16.7 116 1083-1221 2-117 (229)
46 COG4192 Signal transduction hi 99.8 1.4E-18 3E-23 196.6 27.0 211 623-903 452-666 (673)
47 PRK13559 hypothetical protein; 99.8 6.1E-19 1.3E-23 205.7 20.5 187 621-904 169-360 (361)
48 PF02518 HATPase_c: Histidine 99.8 4.2E-19 9.1E-24 172.7 14.0 110 733-903 1-110 (111)
49 PRK09581 pleD response regulat 99.8 2.9E-17 6.2E-22 196.3 21.1 255 929-1220 4-272 (457)
50 PRK10935 nitrate/nitrite senso 99.7 1.7E-16 3.7E-21 196.1 27.3 193 625-905 363-561 (565)
51 COG3290 CitA Signal transducti 99.7 1.3E-16 2.8E-21 187.7 24.6 194 625-905 336-533 (537)
52 COG2204 AtoC Response regulato 99.7 7.1E-17 1.5E-21 190.5 15.6 118 1082-1222 5-122 (464)
53 PF00072 Response_reg: Respons 99.7 2E-16 4.3E-21 152.6 14.3 111 1084-1217 1-112 (112)
54 COG0784 CheY FOG: CheY-like re 99.7 3.1E-16 6.7E-21 155.2 15.9 120 1080-1221 4-125 (130)
55 COG3437 Response regulator con 99.7 7.7E-17 1.7E-21 181.3 12.3 120 1081-1220 14-133 (360)
56 COG3706 PleD Response regulato 99.7 4.7E-16 1E-20 182.3 17.7 225 957-1222 18-252 (435)
57 PRK10600 nitrate/nitrite senso 99.7 6.7E-15 1.5E-19 182.8 28.1 183 633-904 373-557 (569)
58 COG4753 Response regulator con 99.6 1.1E-15 2.3E-20 180.2 13.5 116 1083-1221 3-121 (475)
59 COG4566 TtrR Response regulato 99.6 4.5E-15 9.7E-20 153.6 13.8 117 1082-1221 5-121 (202)
60 PRK10547 chemotaxis protein Ch 99.6 8.7E-14 1.9E-18 173.0 26.2 146 696-905 344-525 (670)
61 PLN03029 type-a response regul 99.6 1.5E-14 3.2E-19 158.8 15.7 120 1081-1220 8-146 (222)
62 COG2197 CitB Response regulato 99.6 5E-14 1.1E-18 153.5 16.2 117 1083-1222 2-120 (211)
63 COG4565 CitB Response regulato 99.5 4.8E-14 1E-18 148.7 13.7 116 1083-1221 2-119 (224)
64 PRK10529 DNA-binding transcrip 99.5 1.2E-13 2.6E-18 149.6 16.9 115 1083-1221 3-117 (225)
65 PRK10046 dpiA two-component re 99.5 1.1E-13 2.4E-18 151.8 16.6 116 1082-1220 5-122 (225)
66 PRK11173 two-component respons 99.5 1.3E-13 2.8E-18 151.2 16.9 116 1082-1221 4-119 (237)
67 PRK10816 DNA-binding transcrip 99.5 2E-13 4.4E-18 147.7 16.5 116 1083-1221 2-117 (223)
68 PRK09836 DNA-binding transcrip 99.5 2.3E-13 5.1E-18 147.7 16.7 116 1083-1221 2-117 (227)
69 PRK10766 DNA-binding transcrip 99.5 3.5E-13 7.5E-18 145.5 16.6 115 1082-1220 3-117 (221)
70 PRK09468 ompR osmolarity respo 99.5 4E-13 8.7E-18 147.2 16.8 118 1081-1221 5-122 (239)
71 PRK04184 DNA topoisomerase VI 99.5 3.6E-13 7.8E-18 162.4 17.6 117 732-905 31-154 (535)
72 PRK10701 DNA-binding transcrip 99.5 4.6E-13 1E-17 147.0 16.8 115 1083-1221 3-117 (240)
73 PRK13856 two-component respons 99.5 4.8E-13 1E-17 147.4 16.6 115 1083-1221 3-118 (241)
74 PRK10643 DNA-binding transcrip 99.5 5.6E-13 1.2E-17 143.2 16.4 116 1083-1221 2-117 (222)
75 PRK10161 transcriptional regul 99.5 6.5E-13 1.4E-17 144.4 16.8 119 1082-1221 3-121 (229)
76 PRK10955 DNA-binding transcrip 99.5 7.5E-13 1.6E-17 143.6 16.8 114 1083-1221 3-116 (232)
77 TIGR02154 PhoB phosphate regul 99.5 7.6E-13 1.6E-17 142.4 16.5 119 1082-1221 3-121 (226)
78 PRK10430 DNA-binding transcrip 99.5 5.9E-13 1.3E-17 147.3 16.0 115 1083-1219 3-120 (239)
79 TIGR03787 marine_sort_RR prote 99.5 9.2E-13 2E-17 142.8 16.4 117 1082-1221 1-119 (227)
80 TIGR02875 spore_0_A sporulatio 99.5 8E-13 1.7E-17 147.9 16.3 119 1082-1221 3-123 (262)
81 PRK10336 DNA-binding transcrip 99.5 1.1E-12 2.5E-17 140.7 16.3 116 1083-1221 2-117 (219)
82 PRK11517 transcriptional regul 99.4 1.7E-12 3.6E-17 140.1 16.8 115 1083-1221 2-116 (223)
83 COG3947 Response regulator con 99.4 1.7E-13 3.7E-18 149.3 8.9 114 1083-1221 2-115 (361)
84 smart00387 HATPase_c Histidine 99.4 2.6E-12 5.6E-17 121.5 15.0 110 733-903 1-110 (111)
85 TIGR01387 cztR_silR_copR heavy 99.4 2.6E-12 5.6E-17 137.7 16.0 115 1084-1221 1-115 (218)
86 PRK11083 DNA-binding response 99.4 3.1E-12 6.7E-17 138.1 16.6 117 1082-1221 4-120 (228)
87 CHL00148 orf27 Ycf27; Reviewed 99.4 4.6E-12 9.9E-17 138.2 16.8 117 1081-1221 6-122 (240)
88 PRK09958 DNA-binding transcrip 99.4 4.9E-12 1.1E-16 134.7 16.2 116 1083-1221 2-118 (204)
89 PRK14084 two-component respons 99.4 3.6E-12 7.8E-17 141.0 15.4 114 1083-1221 2-117 (246)
90 PRK10923 glnG nitrogen regulat 99.4 4E-12 8.7E-17 154.5 16.7 117 1082-1221 4-120 (469)
91 PRK10840 transcriptional regul 99.4 5.4E-12 1.2E-16 137.2 16.0 117 1082-1221 4-125 (216)
92 PRK11361 acetoacetate metaboli 99.4 4.6E-12 9.9E-17 153.3 16.5 118 1081-1221 4-121 (457)
93 PRK15115 response regulator Gl 99.4 3.6E-12 7.9E-17 153.7 15.2 117 1082-1221 6-122 (444)
94 TIGR02915 PEP_resp_reg putativ 99.4 4.9E-12 1.1E-16 152.7 15.2 113 1084-1221 1-118 (445)
95 PRK10360 DNA-binding transcrip 99.4 1.1E-11 2.5E-16 131.0 16.0 113 1083-1221 3-117 (196)
96 PRK10365 transcriptional regul 99.4 4.7E-12 1E-16 152.5 14.5 117 1082-1221 6-122 (441)
97 PRK12555 chemotaxis-specific m 99.4 8.5E-12 1.8E-16 145.4 15.6 114 1083-1220 2-128 (337)
98 PRK09935 transcriptional regul 99.4 1.6E-11 3.4E-16 130.8 16.5 117 1082-1221 4-122 (210)
99 PRK09483 response regulator; P 99.3 1.5E-11 3.2E-16 132.3 16.2 116 1083-1221 3-120 (217)
100 PRK11697 putative two-componen 99.3 1E-11 2.3E-16 136.4 14.9 114 1082-1221 2-117 (238)
101 TIGR01818 ntrC nitrogen regula 99.3 8E-12 1.7E-16 151.5 15.3 115 1084-1221 1-115 (463)
102 KOG0519 Sensory transduction h 99.3 4.3E-12 9.2E-17 162.0 13.2 395 612-1057 376-781 (786)
103 COG4567 Response regulator con 99.3 8.6E-12 1.9E-16 124.4 12.1 114 1082-1218 10-123 (182)
104 PRK10710 DNA-binding transcrip 99.3 2.5E-11 5.3E-16 132.5 17.1 116 1082-1221 11-126 (240)
105 PRK15479 transcriptional regul 99.3 4.3E-11 9.2E-16 128.5 16.3 116 1083-1221 2-117 (221)
106 TIGR01052 top6b DNA topoisomer 99.3 5.9E-11 1.3E-15 142.0 17.4 112 731-902 22-139 (488)
107 PRK09390 fixJ response regulat 99.3 4.5E-11 9.7E-16 125.5 14.3 117 1082-1221 4-120 (202)
108 PRK09581 pleD response regulat 99.3 7.1E-11 1.5E-15 141.4 16.6 117 1083-1220 4-120 (457)
109 PRK14868 DNA topoisomerase VI 99.3 5.9E-11 1.3E-15 145.7 15.7 131 713-904 21-160 (795)
110 PRK00742 chemotaxis-specific m 99.3 7E-11 1.5E-15 138.6 15.9 104 1082-1209 4-111 (354)
111 PF00512 HisKA: His Kinase A ( 99.2 3.5E-11 7.7E-16 106.9 10.0 66 621-686 1-68 (68)
112 PRK10100 DNA-binding transcrip 99.2 1.4E-10 3.1E-15 126.9 14.6 114 1081-1221 10-126 (216)
113 COG3452 Predicted periplasmic 99.2 2.7E-09 5.9E-14 115.6 23.8 177 272-506 20-200 (297)
114 PRK10610 chemotaxis regulatory 99.2 4.9E-10 1.1E-14 107.3 16.5 120 1081-1221 5-125 (129)
115 PRK11475 DNA-binding transcrip 99.2 1.5E-10 3.3E-15 125.8 14.0 106 1094-1222 3-115 (207)
116 cd00075 HATPase_c Histidine ki 99.2 2E-10 4.4E-15 106.8 12.9 71 829-901 33-103 (103)
117 PRK15369 two component system 99.2 4.3E-10 9.3E-15 118.7 16.4 117 1082-1221 4-122 (211)
118 COG2201 CheB Chemotaxis respon 99.2 1.1E-10 2.4E-15 133.7 12.4 103 1082-1208 2-108 (350)
119 PRK10651 transcriptional regul 99.2 4.4E-10 9.6E-15 119.8 16.2 117 1082-1221 7-125 (216)
120 PRK13558 bacterio-opsin activa 99.2 1.4E-10 3E-15 147.1 14.3 115 1082-1219 8-124 (665)
121 PRK10403 transcriptional regul 99.2 4.8E-10 1E-14 119.3 16.1 117 1082-1221 7-125 (215)
122 PRK13435 response regulator; P 99.2 5E-10 1.1E-14 113.6 15.5 114 1081-1221 5-120 (145)
123 TIGR01925 spIIAB anti-sigma F 99.2 2.9E-10 6.4E-15 115.0 12.9 99 733-901 35-136 (137)
124 PRK14867 DNA topoisomerase VI 99.2 2.2E-10 4.8E-15 140.8 14.2 115 732-905 28-151 (659)
125 COG0643 CheA Chemotaxis protei 99.1 1.3E-08 2.8E-13 127.9 25.6 142 698-905 393-575 (716)
126 PRK09191 two-component respons 99.1 1.6E-09 3.5E-14 120.8 15.6 114 1082-1221 138-253 (261)
127 COG3707 AmiR Response regulato 99.1 8.4E-10 1.8E-14 115.7 11.2 113 1081-1217 5-118 (194)
128 PRK03660 anti-sigma F factor; 99.1 1.9E-09 4.1E-14 110.2 13.7 103 733-905 35-140 (146)
129 PRK15411 rcsA colanic acid cap 99.0 2.6E-09 5.7E-14 116.3 14.4 115 1083-1221 2-122 (207)
130 PRK10693 response regulator of 99.0 1.4E-09 3E-14 125.2 12.1 88 1110-1220 2-90 (303)
131 COG4585 Signal transduction hi 99.0 2.5E-07 5.4E-12 109.2 30.0 123 701-903 243-365 (365)
132 cd00156 REC Signal receiver do 99.0 6E-09 1.3E-13 95.1 12.6 112 1085-1219 1-112 (113)
133 COG3851 UhpB Signal transducti 98.9 6.6E-07 1.4E-11 100.8 26.5 226 587-902 263-493 (497)
134 COG3920 Signal transduction hi 98.9 5.8E-07 1.3E-11 98.9 25.1 195 621-905 18-217 (221)
135 COG3850 NarQ Signal transducti 98.8 1.7E-06 3.7E-11 102.5 26.1 184 627-902 374-567 (574)
136 COG2972 Predicted signal trans 98.8 3.9E-06 8.5E-11 102.2 29.6 66 829-905 386-454 (456)
137 PRK04069 serine-protein kinase 98.7 1.6E-07 3.4E-12 98.4 14.3 104 734-905 39-145 (161)
138 PRK15029 arginine decarboxylas 98.7 5.8E-08 1.3E-12 122.5 13.0 106 1083-1211 2-121 (755)
139 COG3275 LytS Putative regulato 98.6 8E-06 1.7E-10 95.6 24.9 131 692-905 414-553 (557)
140 COG3279 LytT Response regulato 98.6 1.3E-07 2.7E-12 105.7 10.1 112 1083-1219 3-116 (244)
141 TIGR01924 rsbW_low_gc serine-p 98.4 1.9E-06 4.1E-11 90.2 13.0 102 735-904 40-144 (159)
142 smart00388 HisKA His Kinase A 98.4 1.2E-06 2.7E-11 75.2 8.4 64 622-685 2-65 (66)
143 COG4564 Signal transduction hi 98.4 0.00011 2.5E-09 82.3 24.7 186 633-905 262-449 (459)
144 PF14501 HATPase_c_5: GHKL dom 98.3 1.1E-05 2.4E-10 77.5 12.9 95 734-903 2-99 (100)
145 PRK11107 hybrid sensory histid 98.2 7.4E-06 1.6E-10 107.7 14.7 117 1078-1219 533-649 (919)
146 KOG0787 Dehydrogenase kinase [ 98.2 0.0002 4.4E-09 82.0 22.0 151 693-904 214-381 (414)
147 COG3706 PleD Response regulato 98.0 3.7E-06 8E-11 99.8 5.2 90 1106-1220 13-102 (435)
148 cd00082 HisKA Histidine Kinase 97.9 4.3E-05 9.4E-10 64.9 8.1 62 621-682 3-65 (65)
149 TIGR00585 mutl DNA mismatch re 97.8 0.00016 3.4E-09 84.0 12.9 65 830-899 52-124 (312)
150 PF13581 HATPase_c_2: Histidin 97.6 0.00062 1.3E-08 67.7 11.6 94 734-900 28-124 (125)
151 COG1389 DNA topoisomerase VI, 97.4 0.0007 1.5E-08 79.3 10.4 112 734-904 33-151 (538)
152 PF00072 Response_reg: Respons 97.1 0.0037 8.1E-08 59.9 9.9 108 930-1054 1-109 (112)
153 COG0745 OmpR Response regulato 96.9 0.0046 1E-07 68.7 10.5 113 928-1057 1-113 (229)
154 smart00448 REC cheY-homologous 96.7 0.0069 1.5E-07 47.2 7.5 54 1083-1137 2-55 (55)
155 COG2172 RsbW Anti-sigma regula 96.4 0.021 4.6E-07 59.1 10.5 92 733-894 36-131 (146)
156 PRK00095 mutL DNA mismatch rep 96.4 0.019 4.1E-07 72.8 11.8 57 830-891 52-114 (617)
157 PF06490 FleQ: Flagellar regul 96.1 0.034 7.3E-07 54.7 9.4 106 1083-1219 1-107 (109)
158 COG2204 AtoC Response regulato 96.0 0.02 4.3E-07 69.3 8.7 176 928-1120 5-210 (464)
159 COG0784 CheY FOG: CheY-like re 96.0 0.08 1.7E-06 52.0 11.6 110 926-1051 4-114 (130)
160 PRK15347 two component system 95.9 0.051 1.1E-06 71.9 12.9 119 926-1057 689-807 (921)
161 PRK11091 aerobic respiration c 95.4 0.053 1.1E-06 70.7 10.2 195 926-1149 524-718 (779)
162 PF13589 HATPase_c_3: Histidin 95.3 0.0095 2E-07 60.8 2.4 67 831-902 35-106 (137)
163 PRK10841 hybrid sensory kinase 95.2 0.076 1.6E-06 70.7 10.6 116 925-1057 799-914 (924)
164 PLN03029 type-a response regul 95.1 0.11 2.4E-06 57.4 10.1 120 926-1053 7-139 (222)
165 TIGR01818 ntrC nitrogen regula 94.7 0.24 5.1E-06 60.6 12.5 186 930-1136 1-195 (463)
166 COG4565 CitB Response regulato 94.7 0.088 1.9E-06 57.1 7.5 112 929-1057 2-115 (224)
167 TIGR02956 TMAO_torS TMAO reduc 94.5 0.11 2.3E-06 69.4 9.7 119 926-1058 701-819 (968)
168 PRK11466 hybrid sensory histid 94.2 0.14 3E-06 67.9 9.7 117 926-1058 680-796 (914)
169 COG3437 Response regulator con 94.2 0.14 3.1E-06 59.4 8.4 114 926-1054 13-127 (360)
170 PRK05559 DNA topoisomerase IV 94.2 0.079 1.7E-06 67.3 6.9 50 831-880 70-131 (631)
171 PRK10816 DNA-binding transcrip 93.0 0.45 9.7E-06 51.4 9.4 113 928-1057 1-113 (223)
172 PRK11173 two-component respons 93.0 0.47 1E-05 52.0 9.7 111 928-1056 4-114 (237)
173 PRK10643 DNA-binding transcrip 92.9 0.51 1.1E-05 50.5 9.6 113 928-1057 1-113 (222)
174 PRK09836 DNA-binding transcrip 92.8 0.52 1.1E-05 51.0 9.7 113 928-1057 1-113 (227)
175 PRK09468 ompR osmolarity respo 92.8 0.56 1.2E-05 51.3 9.8 114 927-1057 5-118 (239)
176 PRK13856 two-component respons 92.6 0.53 1.1E-05 51.8 9.5 111 929-1056 3-113 (241)
177 PRK10766 DNA-binding transcrip 92.1 0.75 1.6E-05 49.5 9.7 111 928-1056 3-113 (221)
178 PRK10336 DNA-binding transcrip 92.1 0.79 1.7E-05 48.9 9.8 112 928-1056 1-112 (219)
179 TIGR03787 marine_sort_RR prote 92.1 0.75 1.6E-05 49.7 9.7 113 929-1057 2-115 (227)
180 PRK00742 chemotaxis-specific m 92.0 4.1 8.9E-05 48.1 16.5 105 927-1048 3-110 (354)
181 COG4567 Response regulator con 92.0 0.45 9.7E-06 49.1 7.0 114 929-1059 11-124 (182)
182 PRK11517 transcriptional regul 92.0 0.78 1.7E-05 49.2 9.6 112 928-1057 1-112 (223)
183 TIGR02154 PhoB phosphate regul 92.0 0.71 1.5E-05 49.4 9.2 115 928-1057 3-117 (226)
184 PRK10701 DNA-binding transcrip 91.9 0.8 1.7E-05 50.1 9.8 110 929-1056 3-112 (240)
185 PRK10161 transcriptional regul 91.8 0.77 1.7E-05 49.7 9.4 115 928-1057 3-117 (229)
186 COG4753 Response regulator con 91.8 0.46 1E-05 57.8 8.1 114 929-1059 3-119 (475)
187 PRK10529 DNA-binding transcrip 91.8 0.8 1.7E-05 49.4 9.5 112 928-1057 2-113 (225)
188 COG4566 TtrR Response regulato 91.5 0.59 1.3E-05 50.1 7.6 116 928-1060 5-120 (202)
189 PRK10955 DNA-binding transcrip 91.5 1 2.2E-05 48.7 9.9 110 929-1057 3-112 (232)
190 cd02071 MM_CoA_mut_B12_BD meth 91.3 3.4 7.3E-05 41.4 12.5 108 1088-1217 10-121 (122)
191 PRK10840 transcriptional regul 91.3 1.1 2.3E-05 48.8 9.7 115 927-1057 3-121 (216)
192 TIGR02875 spore_0_A sporulatio 91.2 0.98 2.1E-05 50.6 9.7 116 928-1058 3-120 (262)
193 TIGR01055 parE_Gneg DNA topois 91.1 0.26 5.6E-06 62.6 5.4 51 831-881 63-125 (625)
194 CHL00148 orf27 Ycf27; Reviewed 91.1 1.2 2.6E-05 48.4 10.0 113 927-1057 6-118 (240)
195 PRK09958 DNA-binding transcrip 91.0 1.1 2.3E-05 47.6 9.2 113 928-1057 1-114 (204)
196 PRK10046 dpiA two-component re 90.9 1.1 2.5E-05 49.1 9.6 114 927-1057 4-119 (225)
197 PRK11083 DNA-binding response 90.7 1.3 2.9E-05 47.4 9.9 113 928-1057 4-116 (228)
198 PF03709 OKR_DC_1_N: Orn/Lys/A 90.7 1.1 2.3E-05 44.5 8.3 96 1095-1213 7-104 (115)
199 PRK15115 response regulator Gl 90.7 0.78 1.7E-05 55.8 8.9 114 927-1057 5-118 (444)
200 PRK14084 two-component respons 90.6 1.1 2.5E-05 49.4 9.3 112 928-1058 1-114 (246)
201 PRK09959 hybrid sensory histid 90.2 0.85 1.9E-05 62.5 9.6 115 926-1057 957-1071(1197)
202 PRK13837 two-component VirA-li 90.1 1.1 2.4E-05 59.2 10.0 115 926-1058 696-810 (828)
203 PRK10365 transcriptional regul 90.1 0.88 1.9E-05 55.2 8.6 114 927-1057 5-118 (441)
204 PRK13435 response regulator; P 89.8 0.74 1.6E-05 46.4 6.5 139 927-1093 5-144 (145)
205 PRK10923 glnG nitrogen regulat 89.7 1.5 3.2E-05 53.9 10.2 113 928-1057 4-116 (469)
206 PRK05644 gyrB DNA gyrase subun 89.6 0.54 1.2E-05 60.0 6.4 31 734-764 34-66 (638)
207 PRK10430 DNA-binding transcrip 89.6 1.7 3.7E-05 48.2 9.7 115 928-1057 2-118 (239)
208 TIGR01059 gyrB DNA gyrase, B s 89.4 0.52 1.1E-05 60.4 6.1 31 734-764 27-59 (654)
209 PRK11361 acetoacetate metaboli 89.3 1.6 3.5E-05 53.3 10.0 114 927-1057 4-117 (457)
210 PRK05218 heat shock protein 90 89.2 1.3 2.9E-05 56.3 9.5 57 831-891 74-142 (613)
211 PRK02261 methylaspartate mutas 89.2 13 0.00028 38.3 14.9 118 1081-1221 3-135 (137)
212 PRK12555 chemotaxis-specific m 89.0 4.9 0.00011 47.2 13.4 103 928-1047 1-106 (337)
213 cd02067 B12-binding B12 bindin 88.9 3.3 7.2E-05 40.9 10.2 95 1088-1205 10-109 (119)
214 PRK14083 HSP90 family protein; 88.9 0.46 9.9E-06 60.0 5.0 57 831-891 64-127 (601)
215 PRK09483 response regulator; P 88.6 2.3 4.9E-05 45.5 9.6 113 928-1057 2-116 (217)
216 PRK10710 DNA-binding transcrip 87.8 2.7 6E-05 45.6 9.7 110 929-1056 12-121 (240)
217 COG3947 Response regulator con 87.6 1.6 3.5E-05 49.6 7.6 109 929-1056 2-110 (361)
218 PRK15479 transcriptional regul 87.1 3.2 6.9E-05 44.2 9.6 112 929-1057 2-113 (221)
219 TIGR01387 cztR_silR_copR heavy 86.9 2.6 5.7E-05 44.8 8.8 110 930-1056 1-110 (218)
220 PTZ00272 heat shock protein 83 85.7 1.1 2.3E-05 57.6 5.7 20 831-850 73-92 (701)
221 PRK15399 lysine decarboxylase 85.7 2.9 6.3E-05 53.7 9.5 98 1083-1205 2-105 (713)
222 COG5381 Uncharacterized protei 85.4 1.8 3.8E-05 44.3 5.8 29 739-768 65-93 (184)
223 TIGR02915 PEP_resp_reg putativ 85.2 2.9 6.2E-05 50.9 8.9 111 930-1058 1-115 (445)
224 PRK13557 histidine kinase; Pro 84.9 3.9 8.4E-05 50.3 10.0 117 925-1056 413-529 (540)
225 PRK11697 putative two-componen 84.5 3.8 8.1E-05 44.9 8.7 111 928-1058 2-114 (238)
226 COG2197 CitB Response regulato 84.4 5.1 0.00011 44.0 9.6 113 929-1058 2-116 (211)
227 PRK10360 DNA-binding transcrip 83.9 5.5 0.00012 41.8 9.3 109 929-1057 3-113 (196)
228 PRK15426 putative diguanylate 83.5 1.3E+02 0.0029 37.7 25.7 63 267-329 24-86 (570)
229 PTZ00130 heat shock protein 90 83.3 1.8 3.8E-05 56.0 6.1 48 831-878 136-194 (814)
230 smart00433 TOP2c Topoisomerase 82.9 1.3 2.8E-05 56.2 4.6 48 831-878 34-93 (594)
231 COG4999 Uncharacterized domain 82.8 7.6 0.00017 38.6 8.7 110 1079-1215 9-120 (140)
232 TIGR03815 CpaE_hom_Actino heli 82.3 4.2 9.2E-05 47.5 8.4 84 1105-1219 1-85 (322)
233 PRK15400 lysine decarboxylase 81.9 4.9 0.00011 51.8 9.2 81 1083-1188 2-88 (714)
234 PRK09935 transcriptional regul 81.8 8.6 0.00019 40.5 9.9 113 928-1057 4-118 (210)
235 COG0323 MutL DNA mismatch repa 81.7 1.5 3.3E-05 56.0 4.6 27 831-857 54-80 (638)
236 PRK09390 fixJ response regulat 81.6 5.6 0.00012 41.3 8.2 112 928-1056 4-115 (202)
237 PRK10610 chemotaxis regulatory 81.5 8.6 0.00019 35.9 8.8 114 927-1055 5-119 (129)
238 PRK09191 two-component respons 80.7 7.9 0.00017 43.0 9.5 111 928-1057 138-249 (261)
239 PRK15029 arginine decarboxylas 77.4 9.4 0.0002 49.7 9.8 87 928-1025 1-95 (755)
240 PF02310 B12-binding: B12 bind 77.3 9.4 0.0002 37.5 7.8 92 1091-1206 14-112 (121)
241 PHA02569 39 DNA topoisomerase 75.5 1.9 4.2E-05 54.6 2.9 50 832-881 81-144 (602)
242 TIGR00640 acid_CoA_mut_C methy 74.8 56 0.0012 33.4 12.8 111 1089-1220 14-127 (132)
243 PRK15369 two component system 74.2 18 0.0004 37.6 9.6 114 927-1057 3-118 (211)
244 PRK10618 phosphotransfer inter 73.7 8.7 0.00019 51.2 8.4 38 922-959 684-721 (894)
245 COG3707 AmiR Response regulato 73.3 11 0.00024 40.7 7.5 113 926-1056 4-117 (194)
246 PRK13558 bacterio-opsin activa 71.9 13 0.00028 47.7 9.2 104 928-1048 8-111 (665)
247 PRK00208 thiG thiazole synthas 71.8 33 0.00071 38.8 10.9 101 1089-1220 108-224 (250)
248 cd00156 REC Signal receiver do 71.4 15 0.00033 32.3 7.2 107 932-1055 2-108 (113)
249 PRK10403 transcriptional regul 71.1 24 0.00052 37.0 9.7 113 928-1057 7-121 (215)
250 PRK10651 transcriptional regul 70.5 25 0.00054 37.1 9.6 114 927-1057 6-121 (216)
251 cd04728 ThiG Thiazole synthase 68.8 37 0.0008 38.3 10.5 102 1088-1220 107-224 (248)
252 COG2201 CheB Chemotaxis respon 66.4 26 0.00057 41.5 9.2 104 928-1048 2-108 (350)
253 PRK14939 gyrB DNA gyrase subun 64.8 4 8.6E-05 53.0 2.4 37 728-764 25-66 (756)
254 cd02070 corrinoid_protein_B12- 64.2 53 0.0012 35.8 10.7 101 1082-1206 83-192 (201)
255 TIGR01058 parE_Gpos DNA topois 63.6 4.4 9.5E-05 51.8 2.4 51 831-881 67-129 (637)
256 TIGR01501 MthylAspMutase methy 62.6 1.2E+02 0.0026 31.3 12.1 109 1092-1221 16-133 (134)
257 PRK10100 DNA-binding transcrip 61.9 40 0.00087 37.3 9.3 112 927-1058 10-123 (216)
258 PF02254 TrkA_N: TrkA-N domain 61.4 74 0.0016 30.8 10.2 93 1082-1204 22-115 (116)
259 COG0326 HtpG Molecular chapero 61.3 11 0.00024 47.4 5.2 48 831-878 75-133 (623)
260 PRK09426 methylmalonyl-CoA mut 60.5 51 0.0011 43.0 11.1 110 1089-1221 594-708 (714)
261 PRK00043 thiE thiamine-phospha 60.2 1.3E+02 0.0028 32.5 12.9 93 1103-1220 102-208 (212)
262 cd02072 Glm_B12_BD B12 binding 57.2 1.6E+02 0.0036 30.0 11.9 103 1092-1217 14-127 (128)
263 PLN03237 DNA topoisomerase 2; 56.6 15 0.00032 50.7 5.6 52 831-882 112-175 (1465)
264 PRK15411 rcsA colanic acid cap 51.7 66 0.0014 35.2 8.8 52 929-987 2-56 (207)
265 PRK01130 N-acetylmannosamine-6 51.4 1.3E+02 0.0028 33.2 11.1 83 1097-1204 110-201 (221)
266 TIGR03321 alt_F1F0_F0_B altern 50.1 4.2E+02 0.0092 29.9 17.4 25 571-595 6-30 (246)
267 cd02069 methionine_synthase_B1 49.7 1.1E+02 0.0024 33.9 10.1 108 1082-1212 89-208 (213)
268 PF01596 Methyltransf_3: O-met 48.4 45 0.00097 36.7 6.8 55 1081-1135 70-130 (205)
269 COG5385 Uncharacterized protei 47.9 3.8E+02 0.0082 28.7 18.4 123 625-764 18-140 (214)
270 PF03602 Cons_hypoth95: Conser 47.4 25 0.00053 37.9 4.5 66 1082-1149 66-138 (183)
271 PF10087 DUF2325: Uncharacteri 46.9 1.7E+02 0.0036 28.0 9.8 65 1083-1152 1-71 (97)
272 COG4122 Predicted O-methyltran 45.7 62 0.0013 36.0 7.4 53 1083-1136 86-142 (219)
273 COG2185 Sbm Methylmalonyl-CoA 44.9 3.3E+02 0.0071 28.5 11.8 111 1088-1219 23-136 (143)
274 PF06490 FleQ: Flagellar regul 44.5 75 0.0016 31.3 7.1 33 929-961 1-33 (109)
275 PTZ00108 DNA topoisomerase 2-l 44.4 18 0.00039 49.9 3.6 51 831-881 95-157 (1388)
276 PRK05458 guanosine 5'-monophos 43.9 2.4E+02 0.0053 33.4 12.3 97 1083-1204 113-229 (326)
277 COG3105 Uncharacterized protei 43.6 1.9E+02 0.0042 29.5 9.5 44 573-616 7-51 (138)
278 PRK10669 putative cation:proto 41.8 2.4E+02 0.0052 35.7 12.8 108 1081-1221 440-548 (558)
279 PRK06231 F0F1 ATP synthase sub 41.8 5.2E+02 0.011 28.5 16.0 69 569-637 47-120 (205)
280 cd04729 NanE N-acetylmannosami 41.7 2.7E+02 0.0058 30.6 11.8 88 1092-1205 110-206 (219)
281 KOG1977 DNA mismatch repair pr 41.5 47 0.001 42.2 6.0 44 829-872 49-98 (1142)
282 PRK13143 hisH imidazole glycer 40.5 1.6E+02 0.0036 31.9 9.7 43 1083-1132 2-44 (200)
283 cd05212 NAD_bind_m-THF_DH_Cycl 40.4 82 0.0018 32.6 6.9 54 1079-1138 26-83 (140)
284 TIGR00007 phosphoribosylformim 40.2 2.2E+02 0.0048 31.4 10.9 66 1115-1204 148-217 (230)
285 COG3452 Predicted periplasmic 39.9 1.5E+02 0.0033 33.9 9.1 35 267-301 19-53 (297)
286 PF10090 DUF2328: Uncharacteri 39.9 5.2E+02 0.011 28.0 20.3 110 639-764 3-112 (182)
287 cd02068 radical_SAM_B12_BD B12 38.9 2.6E+02 0.0057 27.8 10.2 60 1092-1151 3-65 (127)
288 PRK13587 1-(5-phosphoribosyl)- 38.9 1.7E+02 0.0037 32.8 9.7 67 1115-1204 151-220 (234)
289 smart00448 REC cheY-homologous 38.2 1.3E+02 0.0028 22.2 6.4 39 929-967 2-40 (55)
290 PLN03128 DNA topoisomerase 2; 37.9 47 0.001 45.4 5.8 50 831-880 87-148 (1135)
291 cd04723 HisA_HisF Phosphoribos 37.8 1.8E+02 0.0038 32.6 9.6 68 1113-1204 147-217 (233)
292 PRK11677 hypothetical protein; 37.8 1.8E+02 0.0039 30.0 8.7 60 268-329 5-64 (134)
293 cd04726 KGPDC_HPS 3-Keto-L-gul 37.4 3.7E+02 0.0081 28.8 11.9 86 1094-1205 92-186 (202)
294 COG0742 N6-adenine-specific me 36.9 1E+02 0.0022 33.6 7.1 54 1082-1135 67-123 (187)
295 COG4984 Predicted membrane pro 36.8 1.1E+02 0.0024 37.5 7.9 74 258-331 5-80 (644)
296 PRK00278 trpC indole-3-glycero 36.8 3.8E+02 0.0082 30.6 12.2 104 1085-1212 139-252 (260)
297 PRK12704 phosphodiesterase; Pr 36.3 31 0.00068 43.2 3.7 44 1178-1221 251-296 (520)
298 PRK14471 F0F1 ATP synthase sub 36.0 5.3E+02 0.012 27.0 15.9 48 571-618 9-61 (164)
299 PRK03659 glutathione-regulated 35.5 1.9E+02 0.0042 37.1 10.6 95 1081-1205 423-518 (601)
300 PRK13111 trpA tryptophan synth 35.1 1E+02 0.0022 35.1 7.3 44 1176-1219 89-138 (258)
301 PRK13453 F0F1 ATP synthase sub 35.1 5.8E+02 0.013 27.2 16.2 47 571-617 19-70 (173)
302 PRK13428 F0F1 ATP synthase sub 34.6 8.6E+02 0.019 30.1 15.6 65 571-635 2-71 (445)
303 PRK11677 hypothetical protein; 34.3 4.1E+02 0.0088 27.5 10.6 18 578-595 7-24 (134)
304 cd00564 TMP_TenI Thiamine mono 34.2 3.1E+02 0.0068 28.8 10.5 76 1104-1205 94-178 (196)
305 PF06295 DUF1043: Protein of u 34.1 1.9E+02 0.0042 29.4 8.3 57 270-328 3-59 (128)
306 PLN02591 tryptophan synthase 34.1 1.2E+02 0.0025 34.6 7.4 45 1176-1220 78-128 (250)
307 PRK10558 alpha-dehydro-beta-de 33.8 2E+02 0.0042 32.9 9.2 98 1097-1216 10-110 (256)
308 TIGR02370 pyl_corrinoid methyl 33.7 2.4E+02 0.0052 30.7 9.6 94 1088-1205 95-193 (197)
309 COG4999 Uncharacterized domain 33.3 1.2E+02 0.0025 30.7 6.2 113 922-1054 6-119 (140)
310 cd04724 Tryptophan_synthase_al 33.2 1.3E+02 0.0028 33.8 7.7 43 1176-1218 76-124 (242)
311 TIGR01334 modD putative molybd 33.0 1.4E+02 0.003 34.6 7.8 71 1107-1203 191-261 (277)
312 COG0512 PabA Anthranilate/para 33.0 63 0.0014 35.1 4.8 52 1082-1134 2-53 (191)
313 PF01408 GFO_IDH_MocA: Oxidore 32.9 2.7E+02 0.0059 26.9 9.1 32 1188-1219 76-109 (120)
314 cd00331 IGPS Indole-3-glycerol 32.7 4.8E+02 0.01 28.5 11.9 79 1102-1204 118-200 (217)
315 PRK05848 nicotinate-nucleotide 30.8 2.3E+02 0.0049 32.7 9.1 72 1107-1204 185-256 (273)
316 PF07568 HisKA_2: Histidine ki 30.3 4.3E+02 0.0094 24.2 9.7 72 629-709 2-73 (76)
317 PRK00811 spermidine synthase; 30.2 2E+02 0.0044 33.1 8.8 55 1082-1138 101-162 (283)
318 COG3105 Uncharacterized protei 29.8 3.4E+02 0.0075 27.8 8.8 59 270-328 12-75 (138)
319 PRK09174 F0F1 ATP synthase sub 29.5 8E+02 0.017 27.0 15.1 49 570-618 53-106 (204)
320 PRK11359 cyclic-di-GMP phospho 29.4 3.3E+02 0.0071 35.6 11.6 102 1097-1220 683-795 (799)
321 TIGR00262 trpA tryptophan synt 29.0 1.7E+02 0.0037 33.3 7.8 44 1176-1219 87-136 (256)
322 PRK10697 DNA-binding transcrip 28.8 1.1E+02 0.0023 30.9 5.3 70 264-333 35-109 (118)
323 PRK03562 glutathione-regulated 28.2 3E+02 0.0065 35.5 10.6 94 1081-1204 423-517 (621)
324 PRK13125 trpA tryptophan synth 28.1 4.1E+02 0.0089 29.8 10.6 89 1093-1206 117-215 (244)
325 PRK10128 2-keto-3-deoxy-L-rham 28.1 2.9E+02 0.0062 31.8 9.3 79 1114-1214 28-107 (267)
326 TIGR00736 nifR3_rel_arch TIM-b 27.7 2E+02 0.0044 32.3 7.8 29 1176-1204 191-219 (231)
327 TIGR03239 GarL 2-dehydro-3-deo 27.6 1.9E+02 0.0041 32.9 7.7 82 1113-1216 21-103 (249)
328 cd04730 NPD_like 2-Nitropropan 27.5 5.7E+02 0.012 28.1 11.5 82 1099-1205 96-185 (236)
329 KOG1979 DNA mismatch repair pr 27.5 72 0.0016 39.9 4.5 25 831-855 58-82 (694)
330 PF14689 SPOB_a: Sensor_kinase 27.4 2.4E+02 0.0051 24.9 6.7 42 625-670 15-56 (62)
331 PHA02047 phage lambda Rz1-like 27.4 5.4E+02 0.012 25.1 9.2 25 304-328 40-64 (101)
332 PRK05282 (alpha)-aspartyl dipe 27.2 3.6E+02 0.0078 30.4 9.7 64 1081-1151 31-100 (233)
333 PRK14474 F0F1 ATP synthase sub 27.1 9.7E+02 0.021 27.2 15.8 26 571-596 6-31 (250)
334 TIGR03151 enACPred_II putative 26.8 4.2E+02 0.009 31.0 10.6 83 1097-1204 101-189 (307)
335 COG4825 Uncharacterized membra 26.7 1.6E+02 0.0035 34.0 6.6 59 1073-1133 172-233 (395)
336 TIGR00566 trpG_papA glutamine 26.6 1.4E+02 0.0031 32.1 6.2 48 1084-1132 2-49 (188)
337 cd01748 GATase1_IGP_Synthase T 26.5 2.4E+02 0.0051 30.5 8.1 42 1084-1132 1-42 (198)
338 PRK12724 flagellar biosynthesi 26.5 6.1E+02 0.013 31.3 12.0 107 1080-1204 251-366 (432)
339 TIGR00693 thiE thiamine-phosph 26.4 4.6E+02 0.0099 28.0 10.2 83 1097-1204 89-179 (196)
340 PF14147 Spore_YhaL: Sporulati 26.3 3.5E+02 0.0077 23.4 6.9 43 270-312 5-47 (52)
341 PRK00748 1-(5-phosphoribosyl)- 26.1 2.2E+02 0.0048 31.3 7.9 66 1115-1204 149-219 (233)
342 PRK07896 nicotinate-nucleotide 26.0 2.4E+02 0.0051 32.9 8.2 71 1107-1203 202-272 (289)
343 PRK14473 F0F1 ATP synthase sub 25.7 7.9E+02 0.017 25.7 15.8 26 571-596 9-34 (164)
344 PF06295 DUF1043: Protein of u 25.6 6.8E+02 0.015 25.4 10.6 17 579-595 4-20 (128)
345 TIGR02978 phageshock_pspC phag 25.4 1.7E+02 0.0037 29.6 6.1 32 302-333 81-112 (121)
346 PF01729 QRPTase_C: Quinolinat 25.4 2E+02 0.0043 30.8 7.0 72 1107-1204 83-154 (169)
347 PRK14472 F0F1 ATP synthase sub 25.4 8.3E+02 0.018 25.9 16.0 46 571-616 19-69 (175)
348 PF10883 DUF2681: Protein of u 24.5 5.9E+02 0.013 24.4 9.0 13 581-593 12-24 (87)
349 PF12273 RCR: Chitin synthesis 24.5 33 0.00073 34.8 0.9 25 205-229 5-29 (130)
350 PLN02274 inosine-5'-monophosph 24.3 6.9E+02 0.015 31.5 12.4 99 1081-1204 260-379 (505)
351 COG2820 Udp Uridine phosphoryl 23.6 1.6E+02 0.0035 33.2 6.0 27 730-757 21-47 (248)
352 PLN02589 caffeoyl-CoA O-methyl 23.6 2.6E+02 0.0057 31.7 7.9 54 1082-1135 105-165 (247)
353 TIGR01037 pyrD_sub1_fam dihydr 23.5 1.5E+02 0.0033 34.2 6.3 46 1176-1221 234-285 (300)
354 TIGR01163 rpe ribulose-phospha 23.4 5.9E+02 0.013 27.3 10.5 100 1084-1204 83-192 (210)
355 PRK11475 DNA-binding transcrip 23.4 2.2E+02 0.0048 31.2 7.1 92 950-1058 16-111 (207)
356 TIGR00064 ftsY signal recognit 23.2 9.3E+02 0.02 27.6 12.4 110 1080-1204 99-224 (272)
357 PRK06731 flhF flagellar biosyn 23.1 9.9E+02 0.021 27.5 12.5 68 1081-1150 103-178 (270)
358 TIGR00735 hisF imidazoleglycer 23.0 5.2E+02 0.011 29.2 10.2 82 1112-1218 155-248 (254)
359 COG0187 GyrB Type IIA topoisom 22.9 55 0.0012 41.4 2.5 50 832-881 70-131 (635)
360 PRK13461 F0F1 ATP synthase sub 22.6 8.9E+02 0.019 25.2 15.8 25 571-595 6-30 (159)
361 PF11044 TMEMspv1-c74-12: Plec 22.6 4.1E+02 0.0089 22.2 6.4 20 583-602 17-36 (49)
362 PRK13460 F0F1 ATP synthase sub 22.5 9.4E+02 0.02 25.5 16.2 62 578-639 24-90 (173)
363 PF06305 DUF1049: Protein of u 22.5 4.5E+02 0.0097 23.1 7.7 9 306-314 56-64 (68)
364 PF01564 Spermine_synth: Sperm 22.5 1.5E+02 0.0033 33.5 5.7 59 1082-1141 101-165 (246)
365 PRK06096 molybdenum transport 22.3 2.7E+02 0.0059 32.3 7.8 72 1107-1204 192-263 (284)
366 cd00452 KDPG_aldolase KDPG and 22.2 3.1E+02 0.0066 29.5 7.8 70 1109-1205 102-171 (190)
367 PTZ00109 DNA gyrase subunit b; 22.0 43 0.00094 44.2 1.4 16 832-847 163-178 (903)
368 cd00429 RPE Ribulose-5-phospha 21.8 6.9E+02 0.015 26.7 10.6 87 1098-1205 98-194 (211)
369 PRK05581 ribulose-phosphate 3- 21.6 9.9E+02 0.022 25.8 11.9 104 1098-1220 102-218 (220)
370 PRK07649 para-aminobenzoate/an 21.6 1.1E+02 0.0023 33.4 4.1 48 1084-1132 2-49 (195)
371 PTZ00314 inosine-5'-monophosph 21.5 5.8E+02 0.012 32.1 11.0 99 1081-1204 253-372 (495)
372 PLN02823 spermine synthase 21.5 2.2E+02 0.0048 33.8 7.0 55 1082-1138 128-188 (336)
373 cd04727 pdxS PdxS is a subunit 21.4 3.3E+02 0.0071 31.6 8.0 29 1176-1204 194-224 (283)
374 COG2165 PulG Type II secretory 21.4 3.1E+02 0.0067 27.2 7.3 29 268-296 15-43 (149)
375 TIGR00095 RNA methyltransferas 21.3 2.3E+02 0.005 30.6 6.6 56 1082-1137 73-132 (189)
376 COG0813 DeoD Purine-nucleoside 21.2 95 0.0021 34.5 3.5 26 731-756 19-44 (236)
377 CHL00200 trpA tryptophan synth 21.2 2.6E+02 0.0056 32.1 7.3 42 1176-1217 91-138 (263)
378 PRK14974 cell division protein 21.1 8.2E+02 0.018 29.1 11.6 69 1081-1151 168-247 (336)
379 cd04722 TIM_phosphate_binding 20.9 4.8E+02 0.01 26.9 8.9 29 1176-1204 170-198 (200)
380 TIGR01855 IMP_synth_hisH imida 20.6 4.8E+02 0.01 28.2 9.0 42 1084-1132 1-42 (196)
381 TIGR00343 pyridoxal 5'-phospha 20.6 1.4E+02 0.0031 34.5 4.9 44 1176-1219 197-247 (287)
382 cd04732 HisA HisA. Phosphorib 20.6 5E+02 0.011 28.5 9.4 67 1114-1204 148-218 (234)
383 KOG1978 DNA mismatch repair pr 20.5 1.8E+02 0.004 37.2 6.2 24 831-854 51-74 (672)
384 PRK06774 para-aminobenzoate sy 20.4 1.5E+02 0.0033 31.9 5.0 48 1084-1132 2-49 (191)
385 PRK01130 N-acetylmannosamine-6 20.3 3E+02 0.0064 30.3 7.4 42 1176-1218 56-116 (221)
No 1
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=5.6e-60 Score=613.25 Aligned_cols=508 Identities=35% Similarity=0.520 Sum_probs=415.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000920 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR 687 (1223)
Q Consensus 608 l~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgk 687 (1223)
+...+.+++++.+.|++|++++||||||||++|+|+++++.....++.+++|++.+..++++|..+|+++++++|+++|+
T Consensus 279 l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~ 358 (919)
T PRK11107 279 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGK 358 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455677788888999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred CCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEcc
Q 000920 688 LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767 (1223)
Q Consensus 688 l~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~ 767 (1223)
+.++..+|++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+ +|.|.|.+....
T Consensus 359 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~-~g~v~i~v~~~~ 437 (919)
T PRK11107 359 LVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTE-SGNIDILVELRA 437 (919)
T ss_pred cEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEEe
Confidence 9999999999999999999999999999999999998888888899999999999999999999995 677777765432
Q ss_pred CccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHh
Q 000920 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847 (1223)
Q Consensus 768 ~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~ 847 (1223)
. ..+...+.|+|.|||+|||++.++
T Consensus 438 ~-------------------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~ 462 (919)
T PRK11107 438 L-------------------------------------------------------SNTKVQLEVQIRDTGIGISERQQS 462 (919)
T ss_pred c-------------------------------------------------------CCCeeEEEEEEEEeCCCcCHHHHH
Confidence 1 011225889999999999999999
Q ss_pred hhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccC
Q 000920 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927 (1223)
Q Consensus 848 rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g 927 (1223)
++|+||++.+.+++++++|+||||+|||++++.|||+|+++|.+|+||+|+|++|+....... ........+.|
T Consensus 463 ~if~~f~~~~~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~------~~~~~~~~~~g 536 (919)
T PRK11107 463 QLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPI------IDGLPTDCLAG 536 (919)
T ss_pred HHhhhhccCCCCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccc------cccCCccccCC
Confidence 999999999998888899999999999999999999999999999999999999996543211 11122345778
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++||++..+..+...|..+|+.+..+.+.... . ...++++++|.+...................
T Consensus 537 ~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~l----~-------~~~~d~il~~~~~~~~~~~~~~~~~~~~~~~- 604 (919)
T PRK11107 537 KRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQL----P-------EAHYDILLLGLPVTFREPLTMLHERLAKAKS- 604 (919)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHHh----c-------cCCCCEEEecccCCCCCCHHHHHHHHHhhhh-
Confidence 999999999999999999999999999998887761 1 2346778888766543333322222222111
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEEE
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILVV 1087 (1223)
..+.++++.++............|...++.||+....+...+......... ...+.......+.+||||
T Consensus 605 -------~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~----~~~~~~~~~~~~~~vLiv 673 (919)
T PRK11107 605 -------MTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPCHHKQP----PLLPPTDESRLPLTVMAV 673 (919)
T ss_pred -------cCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhhccccc----ccccccccccCCCeEEEE
Confidence 123344555555555556666788889999999988776655432110000 000001111235689999
Q ss_pred ecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccc
Q 000920 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAE 1167 (1223)
Q Consensus 1088 DDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~ 1167 (1223)
|||+.++..+..+|+..|+.|..+.+|.+|++.+.. ..||+||||+.||+|||+++++.||+...
T Consensus 674 dd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~-~~~dlil~D~~mp~~~g~~~~~~lr~~~~-------------- 738 (919)
T PRK11107 674 DDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ-RPFDLILMDIQMPGMDGIRACELIRQLPH-------------- 738 (919)
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCcHHHHHHHHHhccc--------------
Confidence 999999999999999999999999999999998864 68999999999999999999999997432
Q ss_pred cccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1168 MFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1168 ~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..++|||++|++...+...+|+++||+||+.||++.++|...+.+++.
T Consensus 739 ------~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 786 (919)
T PRK11107 739 ------NQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKP 786 (919)
T ss_pred ------CCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcc
Confidence 236899999999999999999999999999999999999999999864
No 2
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=1.2e-57 Score=588.17 Aligned_cols=482 Identities=29% Similarity=0.453 Sum_probs=372.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000920 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR 687 (1223)
Q Consensus 608 l~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgk 687 (1223)
++++++++++++++|++|+++|||||||||++|+|++++|....++++++++++.+..++++|..+|+++||++|++++.
T Consensus 433 L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~ 512 (924)
T PRK10841 433 LQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQ 512 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445566777888999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred CCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEcc
Q 000920 688 LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767 (1223)
Q Consensus 688 l~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~ 767 (1223)
+.++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+ +|.|.|.+...+
T Consensus 513 ~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~-~G~I~I~v~~~~ 591 (924)
T PRK10841 513 LKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTD-TGCIVLHVRVDG 591 (924)
T ss_pred ceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEEeC
Confidence 9999999999999999999999999999999999988888878999999999999999999999995 677877765321
Q ss_pred CccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHh
Q 000920 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847 (1223)
Q Consensus 768 ~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~ 847 (1223)
..+.|+|+|||+|||++.++
T Consensus 592 ------------------------------------------------------------~~l~i~V~DtG~GI~~e~~~ 611 (924)
T PRK10841 592 ------------------------------------------------------------DYLSFRVRDTGVGIPAKEVV 611 (924)
T ss_pred ------------------------------------------------------------CEEEEEEEEcCcCCCHHHHH
Confidence 15789999999999999999
Q ss_pred hhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccC
Q 000920 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927 (1223)
Q Consensus 848 rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g 927 (1223)
++|+||++.+.+..+..+|+||||+||++|+++|||+|+++|.+|+||+|+|.+|+....... ........+
T Consensus 612 ~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~--------~~~~~~~~g 683 (924)
T PRK10841 612 RLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQ--------KKGVEGLQG 683 (924)
T ss_pred HHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccc--------cccCcccCC
Confidence 999999999887777888999999999999999999999999999999999999986432211 112234578
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++.+++........+++++|..+....... ....++++.|........... ...-...
T Consensus 684 ~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~~--------------~~~~d~~i~d~~~~~~~~~~~---~~~~~~~- 745 (924)
T PRK10841 684 KRCWLAVRNASLEQFLETLLQRSGIQVQRYEGQE--------------PTPEDVLITDDPVQKKWQGRA---VITFCRR- 745 (924)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCCeEEEccccc--------------CCcCcEEEEcCccccccchhh---hhhhhhc-
Confidence 8899999888888899999999999987654211 112234444432211100000 0000000
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcch---hH-hhhhcCCCccccCCCCcE
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESS---KK-LQQKRKKPSLGHLLKGKQ 1083 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~---~~-~~~~~~~~~~~~~~~~~r 1083 (1223)
.. ..|. ... ....+.+|.....+...+....... .. ...............+.+
T Consensus 746 -~~----~~~~---------------~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (924)
T PRK10841 746 -HI----GIPL---------------EIA--PGEWVHSTATPHELPALLARIYRIELESDDSANALPSTDKAVSDNDDMM 803 (924)
T ss_pred -cc----cChh---------------hcc--cCceeeccCChHHHHHHHHHHhhcccccccccccccccccccccCCCCE
Confidence 00 0000 000 0012223322222221111100000 00 000000000011124579
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCC
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~ 1163 (1223)
|||||||+.++..+..+|++.|+.|..+.||.+|++.+.. ..||+||||++||+|||+++++.||+..
T Consensus 804 ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~-~~~DlVl~D~~mP~mdG~el~~~ir~~~----------- 871 (924)
T PRK10841 804 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-NHIDIVLTDVNMPNMDGYRLTQRLRQLG----------- 871 (924)
T ss_pred EEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHhcC-----------
Confidence 9999999999999999999999999999999999999874 6799999999999999999999999643
Q ss_pred cccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1164 ~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|++...++..+|+++|||+||.||++.++|...+.++..
T Consensus 872 -----------~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~ 918 (924)
T PRK10841 872 -----------LTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAE 918 (924)
T ss_pred -----------CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999988754
No 3
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-60 Score=597.37 Aligned_cols=768 Identities=33% Similarity=0.402 Sum_probs=550.7
Q ss_pred CccceeeeccccccceeeeccCCChhhHHHHHHHHHcCCcccccceeecccCCceEEEEEEeeccCCCCCCCHHHHH-Hh
Q 000920 410 DEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRI-EA 488 (1223)
Q Consensus 410 ~~Y~Pvi~~~~~~~~~~g~Dm~s~~~rr~ai~~Ar~tg~~~lt~p~~L~~~~~~G~~l~~pvy~~~~~~~~~~~~r~-~a 488 (1223)
.+|.|+++...+..+.+.+|...+-+++.+-..++-++..+++.++....+...+...++-++...++.......+. ++
T Consensus 4 ~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~ 83 (786)
T KOG0519|consen 4 IESKPLKFNNDTISSIVTLDNDDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEA 83 (786)
T ss_pred cccccccccccceeEEEEeecCCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhccccccccccccee
Confidence 78999999999999999999999999999999999999999999998887777777777777766665555444443 33
Q ss_pred hheEEEEeeehHHHHHHHHHhhhccceEEEEEeecCCCCCCccccCCCCCCccceEeeccCCCCCccccceeee--eccC
Q 000920 489 TLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCR--FKQK 566 (1223)
Q Consensus 489 ~~G~v~~~~~v~~l~~~~l~~~~~~~~i~v~vyd~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~ 566 (1223)
...+-...++..-.....+.....+......++..........+|+.........++....+..+.+.+.+.++ ....
T Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 163 (786)
T KOG0519|consen 84 GVLSEFIAFDNLCGATHLLNGWTSYTSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAE 163 (786)
T ss_pred ccccchhhhhhhhhhcccchhhhcCCccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchh
Confidence 33555556666655555555555555565666666555555667777666665666666777777777777776 3333
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHH
Q 000920 567 PPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQ--FLATVSHEIRTPMNGVLGML 644 (1223)
Q Consensus 567 ~~~~w~~~~~~i~~lvi~llv~~i~~~~i~ri~~ve~~~~el~e~k~~ae~a~~aKs~--FLA~vSHELRTPLn~IlG~l 644 (1223)
....+..+............+.+....+..+...++....++.+....++++...+++ |+++++|||||||++ |+.
T Consensus 164 l~~~~~~i~~s~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~ 241 (786)
T KOG0519|consen 164 LDYEVGLINTSLETLSIVRMLTHEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GML 241 (786)
T ss_pred hhhhhhhhhhhhheeeeeeeeeeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--Ccc
Confidence 4455555566666566666666777788888887888888888888888888888888 999999999999999 888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEec
Q 000920 645 QMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724 (1223)
Q Consensus 645 elL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~ 724 (1223)
..+.++..+.+++.+....+.++..++.++|+++|.+++++|.+++...+|++..+++.+.+.+.+.+..++..+...++
T Consensus 242 ~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~ 321 (786)
T KOG0519|consen 242 GGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLS 321 (786)
T ss_pred eEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccc
Q 000920 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVV 804 (1223)
Q Consensus 725 ~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~ 804 (1223)
...|..+.+|+.+++||+.|+++||+||| ..|+|..+++..+......+......... +-.+....
T Consensus 322 ~~~p~~v~~de~~~~qv~~n~v~naik~t-~~~~i~~~~~~~~~~~~~~~~l~~~~~e~-------------~~~~~~~~ 387 (786)
T KOG0519|consen 322 SGVPRNVRGDEARLRQVIANLVSNAIKFT-HAGHLEESVIAREELSESNDVLLRAKEEA-------------HMAGKARI 387 (786)
T ss_pred CCCcceeeccceeeeeeehhhccceeccc-ccceEEEEEEeehhcchhhHHHHhhhhhh-------------hhccchhh
Confidence 99999999999999999999999999999 68999999988765432211111000000 00000000
Q ss_pred ccccccc-ccccccCccccccccceEEEEEEEecCCCCCHHhHhh-hcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcC
Q 000920 805 DRWKSWE-NFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR-IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMG 882 (1223)
Q Consensus 805 ~~~~~w~-~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~r-LFepF~q~d~stsr~~gGTGLGLsI~k~LVelmg 882 (1223)
+....|. ..+..-.....-...-....+.+.|+|.||+.+.... +|.+|.|++.+.++.++|+|+|++|+++++++|+
T Consensus 388 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~ 467 (786)
T KOG0519|consen 388 DFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMS 467 (786)
T ss_pred hHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHH
Confidence 0000000 0000000000000011245688999999999998888 9999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHH
Q 000920 883 GEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962 (1223)
Q Consensus 883 G~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~ 962 (1223)
|.+.+.+....|++|+|.+++....+................+.|..+++++-+..+..+.....+.+|..+++..+...
T Consensus 468 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~ 547 (786)
T KOG0519|consen 468 GEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSL 547 (786)
T ss_pred HHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEecccCccccccccchh
Confidence 99999999999999999999977654433211111233344566766666666665555666666777888887766665
Q ss_pred HhhhhcccCCCCCCCcceEEEecccccchhhhHH-HH-HHHHHHHhcCCcccccCCCeEEEEeccCCccchhhhhcCCce
Q 000920 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLV-LH-YMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV 1040 (1223)
Q Consensus 963 A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~ 1040 (1223)
++-....... .-.....++...+....+.. .. ......+. . ......+..+.++.+.......+.......
T Consensus 548 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (786)
T KOG0519|consen 548 AFWFLDLSLS----DLEVCKQIEDNEEGSNNGDISSSNPLHKSLRD-L--TSKLSSGSGLSLALCPENSQLMEGNIGLVP 620 (786)
T ss_pred hhhhcccccc----cchheEEeeeccccccCCCcchhhhhhhcccc-c--hhhcccccccccccchhhHHhhhccccccc
Confidence 5544322211 11233444544443322111 00 00011000 0 000012333333332221111111111111
Q ss_pred -eeecccccccccccccCCCCcc-hhHhhhhc---CCCccccCCCCcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHH
Q 000920 1041 -TLLTKPLRLSVLIGCFQEDPES-SKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115 (1223)
Q Consensus 1041 -~~l~KPl~~s~L~~~l~~~~~~-~~~~~~~~---~~~~~~~~~~~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~ 1115 (1223)
....+|.....+..++...... +....... ..+.....++|++|||||||.+|++|++.+|+++|++++++.+|.
T Consensus 621 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~ 700 (786)
T KOG0519|consen 621 SSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQ 700 (786)
T ss_pred ccccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcH
Confidence 1223344444455555443322 11111111 112355678899999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHH
Q 000920 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195 (1223)
Q Consensus 1116 eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l 1195 (1223)
||++++.+++.||+||||+|||+|||+|++++||+.+ .+|+|||||||++++++.++|+
T Consensus 701 e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~---------------------~~~~pIvAlTa~~~~~~~~~c~ 759 (786)
T KOG0519|consen 701 EALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKE---------------------RWHLPIVALTADADPSTEEECL 759 (786)
T ss_pred HHHHhcCCCCcccEEEEEcCCcccchHHHHHHHHHhh---------------------cCCCCEEEEecCCcHHHHHHHH
Confidence 9999999789999999999999999999999999754 2689999999999999999999
Q ss_pred HcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1196 KCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1196 ~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
++|||+||+|||+.+.|...+++++.
T Consensus 760 ~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 760 EVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred HhCCceEEcccccHHHHHHHHHHHhc
Confidence 99999999999999999999999985
No 4
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=2.5e-53 Score=551.46 Aligned_cols=427 Identities=35% Similarity=0.496 Sum_probs=332.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000920 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR 687 (1223)
Q Consensus 608 l~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgk 687 (1223)
+.+.++++++++..|++|++++||||||||++|.|++++|.+...+++++++++.+..++.+|..+||++|+++|+|++.
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~ 463 (921)
T PRK15347 384 LAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQ 463 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33445566677788999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred CCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEcc
Q 000920 688 LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767 (1223)
Q Consensus 688 l~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~ 767 (1223)
+.++..++++.++++++...+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+ +|.|.|++...+
T Consensus 464 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~-~g~I~i~~~~~~ 542 (921)
T PRK15347 464 MTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTE-TGGIRLRVKRHE 542 (921)
T ss_pred ccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCC-CCCEEEEEEEcC
Confidence 9999999999999999999999999999999999998888888999999999999999999999994 677888775322
Q ss_pred CccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHh
Q 000920 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847 (1223)
Q Consensus 768 ~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~ 847 (1223)
+ .+.|+|+|||+|||++.++
T Consensus 543 ~------------------------------------------------------------~~~i~V~D~G~Gi~~~~~~ 562 (921)
T PRK15347 543 Q------------------------------------------------------------QLCFTVEDTGCGIDIQQQQ 562 (921)
T ss_pred C------------------------------------------------------------EEEEEEEEcCCCCCHHHHH
Confidence 1 5789999999999999999
Q ss_pred hhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccC
Q 000920 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927 (1223)
Q Consensus 848 rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g 927 (1223)
+||+||+|.+.. .+|+||||+||+++++.|||+|+++|++|+||+|+|.+|+........ ..+
T Consensus 563 ~if~~f~~~~~~----~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~-------------~~~ 625 (921)
T PRK15347 563 QIFTPFYQADTH----SQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEP-------------LKG 625 (921)
T ss_pred HHhcCcccCCCC----CCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCccc-------------ccc
Confidence 999999987642 469999999999999999999999999999999999999864221100 000
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
. ..........+..+|............ ... +...... .+.......
T Consensus 626 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-----~~~~~~~----~~~~~~~~~--- 672 (921)
T PRK15347 626 E--------LSAPLALHRQLSAWGITCQPGHQNPAL-------------LDP-----ELAYLPG----RLYDLLQQI--- 672 (921)
T ss_pred c--------ccchHHHHHHHHHcCCcccccccchhh-------------cch-----hhhhcch----HHHHHHHHH---
Confidence 0 000111223344444433221100000 000 0000000 000000000
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEEE
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILVV 1087 (1223)
....+. ......+ ....+.+||||
T Consensus 673 ------------------------------------------------~~~~~~-----~~~~~~~---~~~~~~~iLiv 696 (921)
T PRK15347 673 ------------------------------------------------IQGAPN-----EPVINLP---LQPWQLQILLV 696 (921)
T ss_pred ------------------------------------------------hhcCCC-----cccccCC---CCcccCCEEEE
Confidence 000000 0000000 01234589999
Q ss_pred ecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccc
Q 000920 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAE 1167 (1223)
Q Consensus 1088 DDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~ 1167 (1223)
|||+.++..+..+|+..|+.+.++.+|.+|++.+.. +.||+||||++||+|||++++++||+.+..
T Consensus 697 dd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~dlil~D~~mp~~~G~~~~~~ir~~~~~------------- 762 (921)
T PRK15347 697 DDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ-HRFDLVLMDIRMPGLDGLETTQLWRDDPNN------------- 762 (921)
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhchhh-------------
Confidence 999999999999999999999999999999998864 679999999999999999999999974321
Q ss_pred cccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1168 MFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1168 ~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
...++|||++|++...+...+|+++||++|+.||++.++|..++.+.+
T Consensus 763 -----~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 763 -----LDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred -----cCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 124689999999999999999999999999999999999999998764
No 5
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=1.8e-53 Score=555.76 Aligned_cols=374 Identities=42% Similarity=0.656 Sum_probs=328.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000920 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESG 686 (1223)
Q Consensus 607 el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesg 686 (1223)
.....+.++++++++|++|+++|||||||||++|.|++++|.+..++++++++++.+..++++|..+|+++++++++|++
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~ 528 (968)
T TIGR02956 449 NHAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAG 528 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455677888899999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEc
Q 000920 687 RLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766 (1223)
Q Consensus 687 kl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~ 766 (1223)
...++..+|++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+ +|.|.|.+...
T Consensus 529 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~-~g~i~i~~~~~ 607 (968)
T TIGR02956 529 HLSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTD-RGSVVLRVSLN 607 (968)
T ss_pred CCeeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCC-CCeEEEEEEEc
Confidence 99999999999999999999999999999999999998888888999999999999999999999994 68888877543
Q ss_pred cCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhH
Q 000920 767 DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846 (1223)
Q Consensus 767 ~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~ 846 (1223)
++ ..+.|+|+|||+|||++.+
T Consensus 608 ~~-----------------------------------------------------------~~~~i~V~D~G~Gi~~~~~ 628 (968)
T TIGR02956 608 DD-----------------------------------------------------------SSLLFEVEDTGCGIAEEEQ 628 (968)
T ss_pred CC-----------------------------------------------------------CeEEEEEEeCCCCCCHHHH
Confidence 21 0278999999999999999
Q ss_pred hhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCccccc
Q 000920 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFR 926 (1223)
Q Consensus 847 ~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~ 926 (1223)
++||+||++.+ ..+..+|+||||+|||++++.|||+|.++|.+|+||+|+|++|+...+....
T Consensus 629 ~~if~~f~~~~--~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~--------------- 691 (968)
T TIGR02956 629 ATLFDAFTQAD--GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAED--------------- 691 (968)
T ss_pred HHHHhhhhccC--CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCcccc---------------
Confidence 99999999998 3455689999999999999999999999999999999999999753210000
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
..
T Consensus 692 --------------------------------------------------~~---------------------------- 693 (968)
T TIGR02956 692 --------------------------------------------------SA---------------------------- 693 (968)
T ss_pred --------------------------------------------------cc----------------------------
Confidence 00
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEE
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILV 1086 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILV 1086 (1223)
..+ | ....+.+|||
T Consensus 694 --------~~~----------------------------~------------------------------~~~~~~~iLv 707 (968)
T TIGR02956 694 --------TLT----------------------------V------------------------------IDLPPQRVLL 707 (968)
T ss_pred --------ccc----------------------------c------------------------------ccccccceEE
Confidence 000 0 0011237999
Q ss_pred EecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCccc
Q 000920 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSA 1166 (1223)
Q Consensus 1087 VDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~ 1166 (1223)
||||+.++..+..+|+..|+.|.++.+|.+|++.+.. ..||+||||++||+|||+++++.||+..+.
T Consensus 708 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~------------ 774 (968)
T TIGR02956 708 VEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ-HAFDLALLDINLPDGDGVTLLQQLRAIYGA------------ 774 (968)
T ss_pred EcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHhCccc------------
Confidence 9999999999999999999999999999999999874 689999999999999999999999975321
Q ss_pred ccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1167 EMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1167 ~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..++|||++|++...+...+|+++||++|+.||++.++|...|.+++.
T Consensus 775 -------~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 775 -------KNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred -------cCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 112899999999999999999999999999999999999999998874
No 6
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=1.5e-53 Score=544.99 Aligned_cols=370 Identities=34% Similarity=0.556 Sum_probs=320.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000920 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691 (1223)
Q Consensus 612 k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~ 691 (1223)
.++++++.++|++|+++|||||||||++|.|+++++.++..+++++++++.+..+++++..+|++++++++++++++.++
T Consensus 273 e~~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 352 (779)
T PRK11091 273 QDALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLD 352 (779)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEE
Confidence 34455666788999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccc
Q 000920 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771 (1223)
Q Consensus 692 ~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~ 771 (1223)
..++++.++++++...+...+..+++.+.+......|..+.+|+.+|+||+.||++||+||+ ++|.|.|.+.....
T Consensus 353 ~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~-~~g~v~i~~~~~~~--- 428 (779)
T PRK11091 353 NQPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFT-QQGGVTVRVRYEEG--- 428 (779)
T ss_pred eeccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhC-CCCcEEEEEEEccC---
Confidence 99999999999999999999999999999998888888899999999999999999999999 46778777653211
Q ss_pred cccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcC
Q 000920 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851 (1223)
Q Consensus 772 ~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFe 851 (1223)
..+.|+|.|||+|||++.+++||+
T Consensus 429 --------------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~iF~ 452 (779)
T PRK11091 429 --------------------------------------------------------DMLTFEVEDSGIGIPEDELDKIFA 452 (779)
T ss_pred --------------------------------------------------------CEEEEEEEecCCCCCHHHHHHHHH
Confidence 147899999999999999999999
Q ss_pred CCccc-CCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccCcEE
Q 000920 852 PFMQA-DSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRA 930 (1223)
Q Consensus 852 pF~q~-d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g~rv 930 (1223)
|||++ +.+.++..+|+||||+|||++|+.|||+|+++|.+|+||+|+|++|+.........
T Consensus 453 ~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~------------------ 514 (779)
T PRK11091 453 MYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVED------------------ 514 (779)
T ss_pred HhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEecccccccccc------------------
Confidence 99999 56666668999999999999999999999999999999999999997432110000
Q ss_pred EEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCCc
Q 000920 931 LVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL 1010 (1223)
Q Consensus 931 LvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1223)
+
T Consensus 515 ----------------------------------------------~--------------------------------- 515 (779)
T PRK11091 515 ----------------------------------------------A--------------------------------- 515 (779)
T ss_pred ----------------------------------------------c---------------------------------
Confidence 0
Q ss_pred ccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEEEecC
Q 000920 1011 EISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDN 1090 (1223)
Q Consensus 1011 ~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILVVDDn 1090 (1223)
..+ .+ ....+.+|||||||
T Consensus 516 ----~~~---------------------------~~------------------------------~~~~~~~ILivdD~ 534 (779)
T PRK11091 516 ----FDE---------------------------DD------------------------------MPLPALNILLVEDI 534 (779)
T ss_pred ----ccc---------------------------cc------------------------------ccccccceEEEcCC
Confidence 000 00 00123479999999
Q ss_pred hhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCccccccc
Q 000920 1091 MVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFG 1170 (1223)
Q Consensus 1091 ~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~ 1170 (1223)
+.++..+..+|+..|+.+..+.+|.+|++.+. .+.||+||||++||+|||++++++||+..+
T Consensus 535 ~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~-~~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~----------------- 596 (779)
T PRK11091 535 ELNVIVARSVLEKLGNSVDVAMTGKEALEMFD-PDEYDLVLLDIQLPDMTGLDIARELRERYP----------------- 596 (779)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEcCCCCCCCHHHHHHHHHhccc-----------------
Confidence 99999999999999999999999999999887 467999999999999999999999996431
Q ss_pred CCCCCc-ccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1171 NVGLWH-VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1171 ~~~~~~-iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+ +|||++|++... ...+|+++||++||.||++.++|...+.+++.
T Consensus 597 ---~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 644 (779)
T PRK11091 597 ---REDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred ---cCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhc
Confidence 123 499999998765 46889999999999999999999999999874
No 7
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=1.8e-51 Score=534.17 Aligned_cols=371 Identities=34% Similarity=0.557 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000920 605 YHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684 (1223)
Q Consensus 605 ~~el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKie 684 (1223)
..+..+.+.+++++.++|++|+++|||||||||++|.|++++|.+...++.++++++.+..++++|..+|++++++++++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~ 506 (914)
T PRK11466 427 VIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIE 506 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566777888899999999999999999999999999999888889999999999999999999999999999999
Q ss_pred cCC--CCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEE
Q 000920 685 SGR--LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVS 762 (1223)
Q Consensus 685 sgk--l~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~ 762 (1223)
.|. +.++..+|++.+++++++..+...+..+++.+.+++++..|..+.+|+.+|+||+.||++||+|||+ +|.|.|.
T Consensus 507 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~-~g~I~i~ 585 (914)
T PRK11466 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTD-EGSIVLR 585 (914)
T ss_pred CCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCC-CCeEEEE
Confidence 884 5667789999999999999999999999999999998888888999999999999999999999994 6888887
Q ss_pred EEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCC
Q 000920 763 VHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIP 842 (1223)
Q Consensus 763 v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~ 842 (1223)
+...+. .+.|+|+|||+|||
T Consensus 586 ~~~~~~------------------------------------------------------------~~~i~V~D~G~Gi~ 605 (914)
T PRK11466 586 SRTDGE------------------------------------------------------------QWLVEVEDSGCGID 605 (914)
T ss_pred EEEcCC------------------------------------------------------------EEEEEEEECCCCCC
Confidence 653211 47899999999999
Q ss_pred HHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCc
Q 000920 843 LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922 (1223)
Q Consensus 843 ~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~ 922 (1223)
++.++++|+||++.+. ..+|+||||+||+++++.|||+|.+.|.+|+||+|+|.+|+.......
T Consensus 606 ~~~~~~if~~f~~~~~----~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~------------ 669 (914)
T PRK11466 606 PAKLAEIFQPFVQVSG----KRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPV------------ 669 (914)
T ss_pred HHHHHHHhchhhcCCC----CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEcccccccc------------
Confidence 9999999999997642 347999999999999999999999999999999999999974311000
Q ss_pred ccccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHH
Q 000920 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLK 1002 (1223)
Q Consensus 923 ~~~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~ 1002 (1223)
+.
T Consensus 670 ------------------------------------------------------~~------------------------ 671 (914)
T PRK11466 670 ------------------------------------------------------PK------------------------ 671 (914)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred HHHhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCc
Q 000920 1003 QQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK 1082 (1223)
Q Consensus 1003 ~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1223)
.. .. | ....++
T Consensus 672 ------~~----~~-----------------------------~------------------------------~~~~~~ 682 (914)
T PRK11466 672 ------TV----NQ-----------------------------A------------------------------VRLDGL 682 (914)
T ss_pred ------cc----cc-----------------------------c------------------------------cccCCc
Confidence 00 00 0 001235
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+|||||||+.++..+..+|+..|+.|.++.+|.+|++.+...+.||+||||++||+|||++++++||+..
T Consensus 683 ~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~~---------- 752 (914)
T PRK11466 683 RLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQY---------- 752 (914)
T ss_pred ceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhhC----------
Confidence 7999999999999999999999999999999999999875445799999999999999999999999632
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+...+++++|+++||.||++.++|...|.+++.
T Consensus 753 ------------~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 753 ------------PSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred ------------CCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 35899999999999999999999999999999999999999998864
No 8
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=4.8e-47 Score=505.78 Aligned_cols=382 Identities=30% Similarity=0.479 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 602 ENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ-LDYAQTAHNSGKDLISLINDVLDQ 680 (1223)
Q Consensus 602 e~~~~el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q-~~~l~~i~~s~~~Ll~LIndlLD~ 680 (1223)
++..+++++.+.+++++..++++|+++|||||||||++|.|++++|.+...+.++ .+++..+..++++|..+|++++++
T Consensus 692 ~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~ 771 (1197)
T PRK09959 692 RDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDV 771 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666777788999999999999999999999999999766555554 478889999999999999999999
Q ss_pred HHHhcCCCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEE
Q 000920 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIF 760 (1223)
Q Consensus 681 sKiesgkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~ 760 (1223)
++++++...+...++++.+++++++..+...+..+++.+.+......+..+.+|+.+|+||+.||++||+||++ +|.+.
T Consensus 772 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~-~g~i~ 850 (1197)
T PRK09959 772 DKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTT-EGAVK 850 (1197)
T ss_pred HHhhcCCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCC-CCCEE
Confidence 99999999999999999999999999999999999999887654333446889999999999999999999995 56666
Q ss_pred EEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCC
Q 000920 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840 (1223)
Q Consensus 761 V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiG 840 (1223)
+.+..... ..+...+.|+|+|||+|
T Consensus 851 i~~~~~~~-------------------------------------------------------~~~~~~~~i~V~D~G~G 875 (1197)
T PRK09959 851 ITTSLGHI-------------------------------------------------------DDNHAVIKMTIMDSGSG 875 (1197)
T ss_pred EEEEEeee-------------------------------------------------------cCCceEEEEEEEEcCCC
Confidence 65542110 00112578999999999
Q ss_pred CCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccC
Q 000920 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920 (1223)
Q Consensus 841 I~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~ 920 (1223)
||++.+++||+||++.+. .+..+|+||||+|||++++.|||+|+++|.+|+||+|++++|+........
T Consensus 876 i~~~~~~~iF~~f~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~--------- 944 (1197)
T PRK09959 876 LSQEEQQQLFKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVAT--------- 944 (1197)
T ss_pred CCHHHHHHhhcccccccc--CCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcc---------
Confidence 999999999999998654 234579999999999999999999999999999999999999742110000
Q ss_pred CcccccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHH
Q 000920 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYM 1000 (1223)
Q Consensus 921 ~~~~~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~ 1000 (1223)
.. .
T Consensus 945 -------------------------------------------------~~-----~----------------------- 947 (1197)
T PRK09959 945 -------------------------------------------------VE-----A----------------------- 947 (1197)
T ss_pred -------------------------------------------------cc-----c-----------------------
Confidence 00 0
Q ss_pred HHHHHhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCC
Q 000920 1001 LKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK 1080 (1223)
Q Consensus 1001 ~~~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1223)
.. .. |. ....
T Consensus 948 --------~~----~~-----------------------------~~-----------------------------~~~~ 957 (1197)
T PRK09959 948 --------KA----EQ-----------------------------PI-----------------------------TLPE 957 (1197)
T ss_pred --------cc----cc-----------------------------cc-----------------------------cccc
Confidence 00 00 00 0011
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
..+||||||++.++..+..+|+..|+.+..+.+|.+|++.+. .+.||+||+|++||+|||+++++.||+..
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~i~~~~-------- 1028 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVS-MQHYDLLITDVNMPNMDGFELTRKLREQN-------- 1028 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 247999999999999999999999999999999999999886 46799999999999999999999999632
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
.++|||++|+....+...+|+++||+|||.||++.++|...|.++.
T Consensus 1029 --------------~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 1074 (1197)
T PRK09959 1029 --------------SSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLH 1074 (1197)
T ss_pred --------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Confidence 2579999999999999999999999999999999999999998764
No 9
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=9.1e-44 Score=454.08 Aligned_cols=240 Identities=21% Similarity=0.371 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000920 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIES 685 (1223)
Q Consensus 606 ~el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKies 685 (1223)
+++++++++++++.++|++|+++|||||||||++|.|+++++.+...+++++++++.+..++++|..+|+++++++|+++
T Consensus 434 ~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 434 KKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666777788889999999999999999999999999999988778888999999999999999999999999999999
Q ss_pred CCCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEE
Q 000920 686 GRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765 (1223)
Q Consensus 686 gkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~ 765 (1223)
|+..++..+|++.+++++++..+...++++++.+.+.++...+..+.+|+.+|+||+.||++||+|||+ +|.|.|.+..
T Consensus 514 ~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~-~G~I~I~v~~ 592 (894)
T PRK10618 514 QDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTA-YGKITLEVDQ 592 (894)
T ss_pred CCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCC-CCeEEEEEEE
Confidence 999999999999999999999999999999999998887666777899999999999999999999994 6888887754
Q ss_pred ccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHh
Q 000920 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845 (1223)
Q Consensus 766 ~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~ 845 (1223)
... ....+.|+|.|||+|||++.
T Consensus 593 ~~~---------------------------------------------------------~~~~l~I~V~DtG~GI~~e~ 615 (894)
T PRK10618 593 DES---------------------------------------------------------SPDRLTIRILDTGAGVSIKE 615 (894)
T ss_pred ccC---------------------------------------------------------CCcEEEEEEEECCCCCCHHH
Confidence 321 01258899999999999999
Q ss_pred HhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 846 ~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
+++||+||++.+.. .+.++|+||||+|||+||+.|||+|+++|.+|+||+|+|++|+.
T Consensus 616 l~~IFePF~t~~~~-~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 616 LDNLHFPFLNQTQG-DRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred HHHhcCccccCCCC-CCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 99999999986543 44567999999999999999999999999999999999999974
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=1.4e-42 Score=446.24 Aligned_cols=364 Identities=21% Similarity=0.280 Sum_probs=293.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHH
Q 000920 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDT-ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698 (1223)
Q Consensus 620 ~aKs~FLA~vSHELRTPLn~IlG~lelL~~~-~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~ 698 (1223)
.+.++|++++||||||||++|.|+++++.+. .......++++.+..+++++..+|++++++++...+ ...++++.
T Consensus 448 ~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~ 523 (828)
T PRK13837 448 EAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLS 523 (828)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHH
Confidence 3567999999999999999999999987653 345567789999999999999999999999986543 45689999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhh
Q 000920 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778 (1223)
Q Consensus 699 ~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~ 778 (1223)
+++++++..+... ..+++.+.+..++. +..+.+|+.+|.||+.||++||+||++++|.|.|++..........
T Consensus 524 ~ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~----- 596 (828)
T PRK13837 524 ELVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKV----- 596 (828)
T ss_pred HHHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccc-----
Confidence 9999999988754 45788888877654 3468899999999999999999999988899988886532110000
Q ss_pred hhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC
Q 000920 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858 (1223)
Q Consensus 779 ~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~ 858 (1223)
+ ......+...+.|+|+|+|+|||++.++++|+||++.+.
T Consensus 597 -------------------~---------------------~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~ 636 (828)
T PRK13837 597 -------------------L---------------------SHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA 636 (828)
T ss_pred -------------------c---------------------ccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC
Confidence 0 000001123688999999999999999999999995432
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccCcEEEEecChhh
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSI 938 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g~rvLvVDd~~~ 938 (1223)
+|+||||+||+++++.|||+|+++|.+|+||+|+|++|..........
T Consensus 637 ------~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~-------------------------- 684 (828)
T PRK13837 637 ------GGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQ-------------------------- 684 (828)
T ss_pred ------CCCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCcc--------------------------
Confidence 799999999999999999999999999999999999997431100000
Q ss_pred hHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCCcccccCCCe
Q 000920 939 RAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018 (1223)
Q Consensus 939 ~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1018 (1223)
. . ..
T Consensus 685 ---------------------------------------~------------------------------~-----~~-- 688 (828)
T PRK13837 685 ---------------------------------------A------------------------------F-----FG-- 688 (828)
T ss_pred ---------------------------------------c------------------------------c-----CC--
Confidence 0 0 00
Q ss_pred EEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEEEecChhHHHHHH
Q 000920 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAE 1098 (1223)
Q Consensus 1019 i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILVVDDn~~n~~vl~ 1098 (1223)
| ...+...+.+|||||||+.++..+.
T Consensus 689 ---------------------------~---------------------------~~~~~~~~~~ILvVddd~~~~~~l~ 714 (828)
T PRK13837 689 ---------------------------P---------------------------GPLPRGRGETVLLVEPDDATLERYE 714 (828)
T ss_pred ---------------------------C---------------------------cccCCCCCCEEEEEcCCHHHHHHHH
Confidence 0 0000013458999999999999999
Q ss_pred HHHhhCCCEEEEECCHHHHHHHhCCC-CCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcc
Q 000920 1099 GALKKHGAIVTCVDCGRAAVDKLTPP-HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177 (1223)
Q Consensus 1099 ~~L~~~G~~V~~a~~G~eAl~~l~~~-~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~i 1177 (1223)
..|...||.+..+.++.+|++.+... ..||+||+ .||.|||+++++.|+... ..+
T Consensus 715 ~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~----------------------~~i 770 (828)
T PRK13837 715 EKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAA----------------------PTL 770 (828)
T ss_pred HHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhC----------------------CCC
Confidence 99999999999999999999988532 34899999 799999999999998532 358
Q ss_pred cEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1178 PILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1178 PIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
|||++|+....+...+++++| +|||.||++.++|..+|.+.+.
T Consensus 771 pIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~ 813 (828)
T PRK13837 771 PIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALA 813 (828)
T ss_pred CEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHc
Confidence 999999999999999999999 9999999999999999998875
No 11
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=9.1e-37 Score=371.69 Aligned_cols=367 Identities=19% Similarity=0.243 Sum_probs=287.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeee
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDT-----ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPF 695 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~-----~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~f 695 (1223)
...++++.++||+||||+.|.|+++++... .......++++.+...++++..++++++++++.. .+....+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 346789999999999999999999987532 1234456788889999999999999999998743 3456778
Q ss_pred cHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccc
Q 000920 696 HLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775 (1223)
Q Consensus 696 dL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~ 775 (1223)
++..+++.+...+.. ...+++.+.+.+.+..+. +.+|+.+++|++.||+.||+||++.+|.|.|.+.........
T Consensus 238 ~l~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~--- 312 (540)
T PRK13557 238 NLNGLVSGMGELAER-TLGDAVTIETDLAPDLWN-CRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDED--- 312 (540)
T ss_pred CHHHHHHHHHHHHHH-hcCCCeEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccc---
Confidence 999999988776543 345777887776665553 667999999999999999999998888877766432110000
Q ss_pred hhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcc
Q 000920 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855 (1223)
Q Consensus 776 ~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q 855 (1223)
+..| ........+.|+|.|+|+|||++.+.++|+||++
T Consensus 313 -------------------------------~~~~-----------~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~ 350 (540)
T PRK13557 313 -------------------------------LAMY-----------HGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFT 350 (540)
T ss_pred -------------------------------cccc-----------cCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcc
Confidence 0000 0001122578999999999999999999999996
Q ss_pred cCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccCcEEEEecC
Q 000920 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDD 935 (1223)
Q Consensus 856 ~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g~rvLvVDd 935 (1223)
.+ ...+|+||||+|||.+++.|||+|+++|.+|+||+|+|++|........ +
T Consensus 351 ~~----~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~---------~--------------- 402 (540)
T PRK13557 351 TK----EEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENP---------E--------------- 402 (540)
T ss_pred cC----CCCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCC---------C---------------
Confidence 43 3346999999999999999999999999999999999999964211000 0
Q ss_pred hhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCCcccccC
Q 000920 936 KSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015 (1223)
Q Consensus 936 ~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1015 (1223)
.
T Consensus 403 -------------------------------------------------------------------------------~ 403 (540)
T PRK13557 403 -------------------------------------------------------------------------------Q 403 (540)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEEEecChhHHH
Q 000920 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRR 1095 (1223)
Q Consensus 1016 ~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILVVDDn~~n~~ 1095 (1223)
.+. + .......+++||||||++..+.
T Consensus 404 ~~~---------------------------~---------------------------~~~~~~~~~~iliv~~~~~~~~ 429 (540)
T PRK13557 404 EPK---------------------------A---------------------------RAIDRGGTETILIVDDRPDVAE 429 (540)
T ss_pred CCC---------------------------C---------------------------cccccCCCceEEEEcCcHHHHH
Confidence 000 0 0000013458999999999999
Q ss_pred HHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCC
Q 000920 1096 VAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE-MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL 1174 (1223)
Q Consensus 1096 vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~-MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~ 1174 (1223)
.+..+|+..|+.+..+.++.+|++.+.....||+|++|..||+ ++|+++++.||+..
T Consensus 430 ~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~~---------------------- 487 (540)
T PRK13557 430 LARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRRQ---------------------- 487 (540)
T ss_pred HHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHhC----------------------
Confidence 9999999999999999999999998854346999999999997 99999999998632
Q ss_pred CcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1175 WHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1175 ~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+.........++.+|+++|+.||++.++|...+.+.+.
T Consensus 488 ~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 488 PKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred CCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 25799999999888888889999999999999999999999998765
No 12
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-39 Score=355.09 Aligned_cols=226 Identities=29% Similarity=0.519 Sum_probs=200.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecH
Q 000920 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAA--QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHL 697 (1223)
Q Consensus 620 ~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~--q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL 697 (1223)
+.+..|.|++||||||||+++.++++.|.+....+. ...++..-++..++|.+|+||+|.+||++.+...++.+.+|+
T Consensus 223 ~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inf 302 (459)
T COG5002 223 RERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINF 302 (459)
T ss_pred HHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHHh
Confidence 346789999999999999999999999988765444 557888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchh
Q 000920 698 HDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777 (1223)
Q Consensus 698 ~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~ 777 (1223)
...+..+++.|....++..+..-+.--+..+.++..|+.++.||+.|+++||+||+|+||+|++.+...++
T Consensus 303 t~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~--------- 373 (459)
T COG5002 303 TAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRET--------- 373 (459)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCc---------
Confidence 99999999999887555544311222244567888999999999999999999999999999998864221
Q ss_pred hhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccC
Q 000920 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857 (1223)
Q Consensus 778 ~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d 857 (1223)
.+.|+|.|.|.|||++.+++||++||+.|
T Consensus 374 ---------------------------------------------------~v~iSI~D~G~gIPk~d~~~iFdrfyRvd 402 (459)
T COG5002 374 ---------------------------------------------------WVEISISDQGLGIPKEDLEKIFDRFYRVD 402 (459)
T ss_pred ---------------------------------------------------EEEEEEccCCCCCCchhHHHHHHHHhhhh
Confidence 58899999999999999999999999999
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 858 ~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
..++|+.|||||||+|+|.+|+.|||.||.+|..|+||+|+|+||...
T Consensus 403 kARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~ 450 (459)
T COG5002 403 KARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSG 450 (459)
T ss_pred hhhhhcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccC
Confidence 999999999999999999999999999999999999999999999864
No 13
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=2.2e-35 Score=347.81 Aligned_cols=246 Identities=28% Similarity=0.394 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHH
Q 000920 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD-------AAQLDYAQTAHNSGKD 669 (1223)
Q Consensus 597 ri~~ve~~~~el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~-------~~q~~~l~~i~~s~~~ 669 (1223)
++.++.+...++.+.++++++..+++.+|++++||||||||++|.+++++|.+...+ +...++++.+..+...
T Consensus 126 ~~~~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (380)
T PRK09303 126 ELLQLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEE 205 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHH
Confidence 334455555556666666667777899999999999999999999999999754322 3356788899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHH
Q 000920 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNS 749 (1223)
Q Consensus 670 Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNA 749 (1223)
+..+|++++++++.+.+...++..++|+.+++++++..+...+..+++.+.+.++...| .+.+|+.+|+||+.||++||
T Consensus 206 l~~li~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NA 284 (380)
T PRK09303 206 IERLITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNA 284 (380)
T ss_pred HHHHHHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877766 57899999999999999999
Q ss_pred HhccCCCCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceE
Q 000920 750 IKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIK 829 (1223)
Q Consensus 750 IKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 829 (1223)
+||++++|.|.|.+....+ ..
T Consensus 285 ik~~~~~~~I~i~~~~~~~-----------------------------------------------------------~~ 305 (380)
T PRK09303 285 IKYTPEGGTITLSMLHRTT-----------------------------------------------------------QK 305 (380)
T ss_pred HhcCCCCceEEEEEEecCC-----------------------------------------------------------CE
Confidence 9999888888876632111 15
Q ss_pred EEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 830 l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
+.|+|.|+|+|||++.++++|+||++.+. .+..+|+||||+||+++++.|||+|+++|.+|+|++|+|++|+.
T Consensus 306 v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 306 VQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVY 378 (380)
T ss_pred EEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecC
Confidence 78999999999999999999999998875 34567999999999999999999999999999999999999974
No 14
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-35 Score=351.96 Aligned_cols=225 Identities=25% Similarity=0.487 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccee
Q 000920 617 AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT--ELDAA-QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFV 693 (1223)
Q Consensus 617 ~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~--~l~~~-q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~ 693 (1223)
+.++.++.|++++||||||||++|.|.++.|... .++++ +.+.+..|...+++|..+|+++||++|+++|.+++...
T Consensus 655 e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~ 734 (890)
T COG2205 655 ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLD 734 (890)
T ss_pred HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence 3456789999999999999999999999998754 45555 66899999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccc
Q 000920 694 PFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773 (1223)
Q Consensus 694 ~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~ 773 (1223)
+..+.+++.+++........... +.+.+++++| .+..|+..|+|||.||+.||+||++++..|.|.+....+
T Consensus 735 ~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~----- 806 (890)
T COG2205 735 WVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVERE----- 806 (890)
T ss_pred hhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecc-----
Confidence 99999999999987766654444 6666677766 688999999999999999999999999889988865432
Q ss_pred cchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCC
Q 000920 774 DVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853 (1223)
Q Consensus 774 ~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF 853 (1223)
.+.|+|.|+|+|||++++++||++|
T Consensus 807 -------------------------------------------------------~v~~~V~DeGpGIP~~~~~~IFD~F 831 (890)
T COG2205 807 -------------------------------------------------------NVVFSVIDEGPGIPEGELERIFDKF 831 (890)
T ss_pred -------------------------------------------------------eEEEEEEeCCCCCChhHHHHhhhhh
Confidence 5889999999999999999999999
Q ss_pred cccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccC
Q 000920 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906 (1223)
Q Consensus 854 ~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~ 906 (1223)
|+.+.... ..|+||||+||+.+|+.|||+|++.+.+++|++|+|+||....
T Consensus 832 ~r~~~~~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 832 YRGNKESA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred hcCCCCCC--CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 99887433 6799999999999999999999999999999999999998653
No 15
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=326.86 Aligned_cols=221 Identities=28% Similarity=0.397 Sum_probs=192.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL-DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l-~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ 699 (1223)
++.+|++++||||||||++|.|+++++.+... ++...++++.+..++++|..++++++++++++.+.......++++..
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~ 282 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPM 282 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHH
Confidence 45689999999999999999999999876543 45566789999999999999999999999999988777778899999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhh
Q 000920 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779 (1223)
Q Consensus 700 ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~ 779 (1223)
+++.+...+.... .+++.+.+.+++.. .+.+|+.+|+||+.||++||+||+++++.|.|++...++
T Consensus 283 ~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~----------- 348 (430)
T PRK11006 283 MLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPQ----------- 348 (430)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC-----------
Confidence 9988877766555 67788888776543 478999999999999999999999888888877643211
Q ss_pred hhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCC
Q 000920 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS 859 (1223)
Q Consensus 780 l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~s 859 (1223)
.+.|+|+|+|+|||++.++++|+|||+.+.+
T Consensus 349 -------------------------------------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 379 (430)
T PRK11006 349 -------------------------------------------------GAEFSVEDNGPGIAPEHIPRLTERFYRVDKA 379 (430)
T ss_pred -------------------------------------------------EEEEEEEEcCCCCCHHHHHHhccCcccccCC
Confidence 4789999999999999999999999999887
Q ss_pred CCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 860 TSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 860 tsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
.++..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|..
T Consensus 380 ~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 380 RSRQTGGSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred CCCCCCCCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEechH
Confidence 777788999999999999999999999999999999999999964
No 16
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=1.3e-30 Score=312.23 Aligned_cols=224 Identities=26% Similarity=0.388 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000920 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691 (1223)
Q Consensus 612 k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~ 691 (1223)
..+.++....+.+|++++||||||||+.|.+.++++.+. +..+.+ .+.+..+++..++++++.+++++.+...+.
T Consensus 202 ~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~~---~i~~~~~~l~~li~~ll~~~rl~~~~~~~~ 276 (433)
T PRK10604 202 ADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAESQ---ALNRDIGQLEALIEELLTYARLDRPQNELH 276 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHHH---HHHHHHHHHHHHHHHHHHHHhccCCCcccC
Confidence 344455556778999999999999999999999988632 222222 367788899999999999999999998889
Q ss_pred eeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccc
Q 000920 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771 (1223)
Q Consensus 692 ~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~ 771 (1223)
..++++.+++++++..+......+++++.+... +..+.+|+..+.+|+.||++||+||+ +|.|.|++...++
T Consensus 277 ~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~--~~~I~I~~~~~~~--- 348 (433)
T PRK10604 277 LSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYA--HSRVRVSLLLDGN--- 348 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhC--CCeEEEEEEEECC---
Confidence 999999999999999998888777777765322 33566899999999999999999998 4677777754321
Q ss_pred cccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcC
Q 000920 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851 (1223)
Q Consensus 772 ~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFe 851 (1223)
.+.|+|+|+|+|||++.++++|+
T Consensus 349 ---------------------------------------------------------~~~I~V~D~G~Gi~~e~~~~if~ 371 (433)
T PRK10604 349 ---------------------------------------------------------QACLIVEDDGPGIPPEERERVFE 371 (433)
T ss_pred ---------------------------------------------------------EEEEEEEEcCCCCCHHHHhhcCC
Confidence 47899999999999999999999
Q ss_pred CCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 852 pF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
||++.+.+++++.+|+||||+|||++++.|||+|.++|.+++|++|++++|...
T Consensus 372 ~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 372 PFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred CCccCCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 999999887777789999999999999999999999999999999999999764
No 17
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.98 E-value=1.8e-30 Score=311.59 Aligned_cols=214 Identities=23% Similarity=0.401 Sum_probs=169.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeec
Q 000920 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD---AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFH 696 (1223)
Q Consensus 620 ~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~---~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fd 696 (1223)
....++++.++|||||||++|.|+++++.....+ ......+..+...+..++..++++++ ........++|
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~d 347 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP------QSPQEIVVPVN 347 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc------cCccccccccc
Confidence 3446788889999999999999999998764333 33334444444444444444444433 23344567899
Q ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCC----eEEEEEEEccCcccc
Q 000920 697 LHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKG----HIFVSVHLADDVRSK 772 (1223)
Q Consensus 697 L~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G----~I~V~v~~~~~~~~~ 772 (1223)
+.+++++++..+...+..+++.+.+..++..| .+.+|+.+|+|||.||++||+||++.+| .|.|.+...
T Consensus 348 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~------ 420 (494)
T TIGR02938 348 LNQILRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALN------ 420 (494)
T ss_pred HHHHHHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEec------
Confidence 99999999999999999999999998877666 5779999999999999999999997664 243333211
Q ss_pred ccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCC
Q 000920 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTP 852 (1223)
Q Consensus 773 ~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFep 852 (1223)
...+.|+|+|||+|||++.+.+||+|
T Consensus 421 ------------------------------------------------------~~~~~~~V~D~G~Gi~~~~~~~iF~~ 446 (494)
T TIGR02938 421 ------------------------------------------------------GDLIVVSILDSGPGIPQDLRYKVFEP 446 (494)
T ss_pred ------------------------------------------------------CCEEEEEEEeCCCCCCHHHHHHhcCC
Confidence 11578999999999999999999999
Q ss_pred CcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 853 FMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 853 F~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
|++.+... ++||||||+|||.||+.|||+|+++|.+|+||+|+|+||+
T Consensus 447 f~~~~~~~---~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 447 FFTTKGGS---RKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred CcccCCCC---CCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 99876432 6799999999999999999999999999999999999995
No 18
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.97 E-value=9.5e-30 Score=305.79 Aligned_cols=232 Identities=26% Similarity=0.448 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000920 611 LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEP 690 (1223)
Q Consensus 611 ~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l 690 (1223)
+..+.+.....+.+|++.+|||+||||+.+.+.++.+.+... ....+.+..+.....++..++++++++++.+.+...+
T Consensus 229 m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~~~~~~ 307 (466)
T PRK10549 229 LASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGALAY 307 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 344455556677899999999999999999999999876432 2234556778888899999999999999999999999
Q ss_pred ceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCcc
Q 000920 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770 (1223)
Q Consensus 691 ~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~ 770 (1223)
...++++.+++++++..+......+++++.+.+++.. .+.+|+.++.|++.||++||+||++++|.|.|.+...++
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~~~~-- 383 (466)
T PRK10549 308 RKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQRDK-- 383 (466)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCC--
Confidence 9999999999999999999999999999998876543 466999999999999999999999888898887754321
Q ss_pred ccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhc
Q 000920 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850 (1223)
Q Consensus 771 ~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLF 850 (1223)
.+.|+|+|+|+|||++.++++|
T Consensus 384 ----------------------------------------------------------~~~i~V~D~G~Gi~~e~~~~lf 405 (466)
T PRK10549 384 ----------------------------------------------------------TLRLTFADSAPGVSDEQLQKLF 405 (466)
T ss_pred ----------------------------------------------------------EEEEEEEecCCCcCHHHHHHhc
Confidence 5789999999999999999999
Q ss_pred CCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 851 epF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
+||++.+.+..+..+|+||||+||+++++.|||++.++|.+++|++|+|.+|+..
T Consensus 406 ~~~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 406 ERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred cCcccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 9999998776677789999999999999999999999999999999999999754
No 19
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.97 E-value=1.5e-29 Score=307.25 Aligned_cols=218 Identities=22% Similarity=0.321 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeee
Q 000920 617 AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE-LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPF 695 (1223)
Q Consensus 617 ~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~-l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~f 695 (1223)
+......+|++++||||||||+.|.++++.|.+.. .+.+ +....+.+...++..+|+++++.++.+++...+....+
T Consensus 261 ~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~~~--~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~~~ 338 (485)
T PRK10815 261 ERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMSVE--QAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRELH 338 (485)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccee
Confidence 33445578999999999999999999999987654 3332 23345667788999999999999999999888888999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccc
Q 000920 696 HLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775 (1223)
Q Consensus 696 dL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~ 775 (1223)
++..++++++..+...+..+++.+.+.+++.. .+.+|+..|.||+.||++||+||+++ .|.|++...+
T Consensus 339 ~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~--~i~I~~~~~~-------- 406 (485)
T PRK10815 339 SVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE--FVEISARQTD-------- 406 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC--cEEEEEEEeC--------
Confidence 99999999999999999999999998876543 46799999999999999999999954 3555543221
Q ss_pred hhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcc
Q 000920 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855 (1223)
Q Consensus 776 ~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q 855 (1223)
..+.|+|+|+|+|||++.++++|+||++
T Consensus 407 ----------------------------------------------------~~v~I~V~D~G~GI~~e~~~~iF~~f~~ 434 (485)
T PRK10815 407 ----------------------------------------------------EHLHIVVEDDGPGIPESKRELIFDRGQR 434 (485)
T ss_pred ----------------------------------------------------CEEEEEEEECCCCcCHHHHHHHhCCccc
Confidence 1578999999999999999999999998
Q ss_pred cCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 856 ~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
.+.. .+|+||||+||+++++.|||+|.++|.+++||+|++++|..
T Consensus 435 ~~~~----~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 435 ADTL----RPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred CCCC----CCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 6543 25999999999999999999999999999999999999864
No 20
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=2.9e-29 Score=302.20 Aligned_cols=215 Identities=28% Similarity=0.488 Sum_probs=187.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHH
Q 000920 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE-LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698 (1223)
Q Consensus 620 ~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~-l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~ 698 (1223)
.+..+|.+++|||+||||++|.|+++++.+.. ...+..++++.+....+++..++++++++++.. ..+..++++.
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~ 310 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLN 310 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHH
Confidence 34568999999999999999999999987643 345666788889999999999999999998843 3556789999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhh
Q 000920 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778 (1223)
Q Consensus 699 ~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~ 778 (1223)
+++++++..+...++++++.+.+..++..+ .+.+|+.+|.|++.||++||+||+..++.|.|.+...++
T Consensus 311 ~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~---------- 379 (457)
T PRK10364 311 DLINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGA---------- 379 (457)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCC----------
Confidence 999999999999999999999998876554 467899999999999999999999778888887754321
Q ss_pred hhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC
Q 000920 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858 (1223)
Q Consensus 779 ~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~ 858 (1223)
.+.|+|+|+|+|||++.++++|+||++.+
T Consensus 380 --------------------------------------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~k- 408 (457)
T PRK10364 380 --------------------------------------------------GVKISVTDSGKGIAADQLEAIFTPYFTTK- 408 (457)
T ss_pred --------------------------------------------------eEEEEEEECCCCCCHHHHHHHhCccccCC-
Confidence 47899999999999999999999998432
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
.+|+||||+|||++++.|||+|+++|.+|+||+|++++|...
T Consensus 409 -----~~g~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 409 -----AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred -----CCCCcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 368999999999999999999999999999999999999853
No 21
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=3.1e-29 Score=323.36 Aligned_cols=223 Identities=25% Similarity=0.449 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeee
Q 000920 618 ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE--LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPF 695 (1223)
Q Consensus 618 a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~--l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~f 695 (1223)
.++.+++|++.+||||||||++|.|+++++.... ......++++.+.....++..+|+++++++++++|.+.++..++
T Consensus 660 ~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~ 739 (895)
T PRK10490 660 REQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWL 739 (895)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccc
Confidence 3456789999999999999999999999876432 22334466788889999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccc
Q 000920 696 HLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775 (1223)
Q Consensus 696 dL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~ 775 (1223)
++.+++++++..+......+++.+. +++..| .+.+|+.+|.||+.||++||+||+++++.|.|++...++
T Consensus 740 ~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~------- 809 (895)
T PRK10490 740 TLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGE------- 809 (895)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEeCC-------
Confidence 9999999999999888777766654 445444 578999999999999999999999888888887653221
Q ss_pred hhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcc
Q 000920 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855 (1223)
Q Consensus 776 ~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q 855 (1223)
.+.|+|.|+|+|||++.+++||+||++
T Consensus 810 -----------------------------------------------------~v~I~V~D~G~GI~~e~~~~IFepF~~ 836 (895)
T PRK10490 810 -----------------------------------------------------RLQLDVWDNGPGIPPGQEQLIFDKFAR 836 (895)
T ss_pred -----------------------------------------------------EEEEEEEECCCCCCHHHHHHhcCCCcc
Confidence 478999999999999999999999998
Q ss_pred cCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 856 ~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
.+.. +..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+..
T Consensus 837 ~~~~--~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 837 GNKE--SAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred CCCC--CCCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 6643 33469999999999999999999999999999999999999853
No 22
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=1.4e-28 Score=286.26 Aligned_cols=223 Identities=23% Similarity=0.319 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000920 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691 (1223)
Q Consensus 612 k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~ 691 (1223)
..+.+...+.+.+|++++||||||||++|.+.++++.+... .. ...+.....++..++++++++++.+.......
T Consensus 127 ~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~~----~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~ 201 (356)
T PRK10755 127 VSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH-ID----VAPLIARLDQMMHTVEQLLQLARAGQSFSSGH 201 (356)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-hh----HHHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 33444444556689999999999999999999998764322 11 23344566789999999999999887666666
Q ss_pred eeeecH-HHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCcc
Q 000920 692 FVPFHL-HDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770 (1223)
Q Consensus 692 ~~~fdL-~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~ 770 (1223)
..++++ .+++..+...+......+++.+.+...+ .+..+.+|+..+++|+.||++||+||+++++.|.|.+...++
T Consensus 202 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~-- 278 (356)
T PRK10755 202 YQTVKLLEDVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQEDG-- 278 (356)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEcCC--
Confidence 677888 8999999888988888898888774222 344678999999999999999999999878888887743221
Q ss_pred ccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhc
Q 000920 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850 (1223)
Q Consensus 771 ~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLF 850 (1223)
.+.|+|+|+|+||+++..+++|
T Consensus 279 ----------------------------------------------------------~~~i~V~D~G~Gi~~~~~~~if 300 (356)
T PRK10755 279 ----------------------------------------------------------GAVLAVEDEGPGIDESKCGELS 300 (356)
T ss_pred ----------------------------------------------------------EEEEEEEECCCCCCHHHHHHhC
Confidence 4789999999999999999999
Q ss_pred CCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEEec
Q 000920 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG-TGSTFSFTVTFT 904 (1223)
Q Consensus 851 epF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g-~GStF~f~Lpl~ 904 (1223)
+||++.+. ..+|+||||+||+++++.|||+|+++|.++ +||+|++.+|..
T Consensus 301 ~~f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 301 KAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred CCeEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 99997653 346999999999999999999999999998 999999999864
No 23
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=2.2e-28 Score=292.28 Aligned_cols=225 Identities=31% Similarity=0.490 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000920 613 ARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD-AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691 (1223)
Q Consensus 613 ~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~-~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~ 691 (1223)
.+.++......+|.+++||||||||+.+.+.++.+.....+ .+..++++.+.....++..++++++++++++.+.....
T Consensus 232 ~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 311 (457)
T TIGR01386 232 GRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNGQLALE 311 (457)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 34444445567899999999999999999999987654433 34456777778888999999999999999999988888
Q ss_pred eeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccc
Q 000920 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771 (1223)
Q Consensus 692 ~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~ 771 (1223)
..++++.+++++++..+...+.++++++.+..+ ..+.+|+..|.+++.||+.||+||++++|.|.|++...++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~~~~--- 384 (457)
T TIGR01386 312 RVRLDLAAELAKVAEYFEPLAEERGVRIRVEGE----GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIERRSD--- 384 (457)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCCeEEEecCC----ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEecCC---
Confidence 899999999999999999989999988766432 4578999999999999999999999888888887753221
Q ss_pred cccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcC
Q 000920 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851 (1223)
Q Consensus 772 ~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFe 851 (1223)
.+.|+|+|+|+|||++.+.++|+
T Consensus 385 ---------------------------------------------------------~~~i~v~D~G~g~~~~~~~~~~~ 407 (457)
T TIGR01386 385 ---------------------------------------------------------EVRVSVSNPGPGIPPEHLSRLFD 407 (457)
T ss_pred ---------------------------------------------------------EEEEEEEeCCCCCCHHHHHHhcc
Confidence 47899999999999999999999
Q ss_pred CCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 000920 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902 (1223)
Q Consensus 852 pF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lp 902 (1223)
|||+.+.+.++..+|+||||+||+++++.|||+|.+++ +++|++|++++|
T Consensus 408 ~~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 408 RFYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred ccccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 99999887666778999999999999999999999999 999999999987
No 24
>PRK09835 sensor kinase CusS; Provisional
Probab=99.97 E-value=4.6e-28 Score=292.27 Aligned_cols=228 Identities=27% Similarity=0.437 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000920 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL-DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEP 690 (1223)
Q Consensus 612 k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l-~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l 690 (1223)
..+.++....+.+|++++|||||||++.|.+.++.+..... ..+..+.+..+.....++..++++++++++.+.+...+
T Consensus 252 ~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~ 331 (482)
T PRK09835 252 IERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIP 331 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 33445555567889999999999999999999988765433 34445667777778889999999999999999998888
Q ss_pred ceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCcc
Q 000920 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770 (1223)
Q Consensus 691 ~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~ 770 (1223)
...++++.++++++...+...+.++++.+.+..+ +..+.+|+.+|++|+.||++||+||+++++.|.|++...++
T Consensus 332 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~~~~-- 406 (482)
T PRK09835 332 EKKMLDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEVDH-- 406 (482)
T ss_pred CceeecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCC--
Confidence 8899999999999999999999999988876532 34578999999999999999999999877888887753221
Q ss_pred ccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhc
Q 000920 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850 (1223)
Q Consensus 771 ~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLF 850 (1223)
.+.|+|+|+|.|||++.++++|
T Consensus 407 ----------------------------------------------------------~~~i~v~d~G~gi~~~~~~~if 428 (482)
T PRK09835 407 ----------------------------------------------------------QVQLVVENPGTPIAPEHLPRLF 428 (482)
T ss_pred ----------------------------------------------------------EEEEEEEECCCCcCHHHHHHHh
Confidence 4789999999999999999999
Q ss_pred CCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 851 epF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
+|||+.+.+..+..+|+||||+||+++++.|||+|+++|.+ .|++|++.+|.
T Consensus 429 ~~f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~ 480 (482)
T PRK09835 429 DRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPR 480 (482)
T ss_pred CCcccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeC
Confidence 99999987766666899999999999999999999999975 69999999985
No 25
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.97 E-value=5.1e-29 Score=290.71 Aligned_cols=235 Identities=30% Similarity=0.463 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 605 YHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT---ELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681 (1223)
Q Consensus 605 ~~el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~---~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~s 681 (1223)
..++.+++..+|+.+....+|...+||++|+||+.|.++.++|... .++.+.++++..+.+-...+.++|+|++.++
T Consensus 507 aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s 586 (750)
T COG4251 507 AEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYS 586 (750)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456667777788888889999999999999999999999999754 6788999999999999999999999999999
Q ss_pred HHhcCCCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCC-CeEE
Q 000920 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDK-GHIF 760 (1223)
Q Consensus 682 Kiesgkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~-G~I~ 760 (1223)
++.. ......+.|+.+++++++........+.++++.+. + +| .+.+|+.++.|++.||+.|||||..++ ..|.
T Consensus 587 ~l~~--~~~~l~~td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~ 660 (750)
T COG4251 587 KLGL--TEAPLQPTDVQKVVDKVLLELSQRIADTGAEIRIA--P-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIE 660 (750)
T ss_pred hhcc--ccCCCCCcchHHHHHHHHHhcccccccccceEEec--c-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceE
Confidence 9855 44555588999999999999999999999988763 3 66 477999999999999999999998655 5566
Q ss_pred EEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCC
Q 000920 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840 (1223)
Q Consensus 761 V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiG 840 (1223)
|+....++ .+.++|.|+|+|
T Consensus 661 I~~~r~ed------------------------------------------------------------~~t~sV~dng~G 680 (750)
T COG4251 661 ISAERQED------------------------------------------------------------EWTFSVRDNGIG 680 (750)
T ss_pred EeeeccCC------------------------------------------------------------ceEEEecCCCCC
Confidence 65432221 367999999999
Q ss_pred CCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCC
Q 000920 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907 (1223)
Q Consensus 841 I~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~ 907 (1223)
|++...++||..|.+..+ ..+|.|||+||+|||+|++.|+|.|+|+|.+|+|+||.|++|....+
T Consensus 681 i~~a~~~riF~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 681 IDPAYFERIFVIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGEE 745 (750)
T ss_pred cCHHHHHHHHHHHHhcCc--hhhhcCCCccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCcC
Confidence 999999999999987753 45688999999999999999999999999999999999999987654
No 26
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=4.4e-28 Score=306.01 Aligned_cols=226 Identities=23% Similarity=0.365 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccee
Q 000920 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFV 693 (1223)
Q Consensus 614 ~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~ 693 (1223)
+.++......+|.+.+|||+||||+.|.+.++.+.....+.+..++++.+....+++..++++++++++++.+....+..
T Consensus 477 ~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~~~~~~ 556 (703)
T TIGR03785 477 RLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQSAEVE 556 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccce
Confidence 44444555678999999999999999999999998777778888899999999999999999999999999988888889
Q ss_pred eecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccc
Q 000920 694 PFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773 (1223)
Q Consensus 694 ~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~ 773 (1223)
++|+.+++++++..+......+++.+.+..+ +..+.+|+..|.||+.||++||+||++++|.|.|++...++
T Consensus 557 ~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~~---~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~~~----- 628 (703)
T TIGR03785 557 DFDLSEVLSGCMQGYQMTYPPQRFELNIPET---PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQNKS----- 628 (703)
T ss_pred eecHHHHHHHHHHHHHHHhhcCCEEEEecCC---CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEcCC-----
Confidence 9999999999999999888888777765432 23678999999999999999999999888888877653221
Q ss_pred cchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCC
Q 000920 774 DVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853 (1223)
Q Consensus 774 ~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF 853 (1223)
.+.|+|+|+|+|||++.+++||+||
T Consensus 629 -------------------------------------------------------~v~I~V~D~G~GI~~e~~~~IFe~F 653 (703)
T TIGR03785 629 -------------------------------------------------------HALLTVSNEGPPLPEDMGEQLFDSM 653 (703)
T ss_pred -------------------------------------------------------EEEEEEEEcCCCCCHHHHHHHhCCC
Confidence 5789999999999999999999999
Q ss_pred cccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEE
Q 000920 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG-TGSTFSFTVT 902 (1223)
Q Consensus 854 ~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g-~GStF~f~Lp 902 (1223)
++.+.......+|+||||+|||.+++.|||+|.++|.++ +|++|++++|
T Consensus 654 ~t~~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 654 VSVRDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred eecCCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 987755555556899999999999999999999999875 8999999987
No 27
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=9e-26 Score=265.16 Aligned_cols=213 Identities=21% Similarity=0.397 Sum_probs=183.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHH
Q 000920 622 KSQFLATVSHEIRTPMNGVLGMLQ---MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698 (1223)
Q Consensus 622 Ks~FLA~vSHELRTPLn~IlG~le---lL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~ 698 (1223)
..++.+.+||||+.||++|.++.+ .|.+....++-.+.+..|..-.++|-.+..++-.|++--.+. ..++.+.
T Consensus 384 LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~ 459 (603)
T COG4191 384 LGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLR 459 (603)
T ss_pred HHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHH
Confidence 468999999999999999999875 567778888888899999999999999999999998754433 5688999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCC--CCeEEEEEEEccCccccccch
Q 000920 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQD--KGHIFVSVHLADDVRSKVDVK 776 (1223)
Q Consensus 699 ~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~--~G~I~V~v~~~~~~~~~~~~~ 776 (1223)
+.|++++.++....+..+.++.....+ .|.+|.+|+.||+|||.|||+||+..+.+ .+.|.|.+...+
T Consensus 460 ~ai~~Al~ll~~R~~~~~~~l~~~~~~-~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~--------- 529 (603)
T COG4191 460 EAIEGALELLRGRLRAAGVELELDLPD-APLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREG--------- 529 (603)
T ss_pred HHHHHHHHHHHHhhhccCceeeccCCC-CCceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecC---------
Confidence 999999999999999999999887654 35689999999999999999999999843 345555543222
Q ss_pred hhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCccc
Q 000920 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856 (1223)
Q Consensus 777 ~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~ 856 (1223)
..+.|+|.|||+||+++...++|+||+..
T Consensus 530 ---------------------------------------------------~~v~l~VrDnGpGi~~e~~~~lFePF~Tt 558 (603)
T COG4191 530 ---------------------------------------------------GQVVLTVRDNGPGIAPEALPHLFEPFFTT 558 (603)
T ss_pred ---------------------------------------------------CeEEEEEccCCCCCCHHHHHhhcCCcccc
Confidence 15889999999999999999999999943
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 857 DSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 857 d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
+....|.||||+||+.|++.|||+|.+.+.++.|+.|++.|+.
T Consensus 559 ----K~~~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 559 ----KPVGKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred ----CcccCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 3345799999999999999999999999999999999999974
No 28
>PRK10337 sensor protein QseC; Provisional
Probab=99.96 E-value=1.7e-27 Score=285.37 Aligned_cols=221 Identities=23% Similarity=0.359 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000920 613 ARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAA-QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691 (1223)
Q Consensus 613 ~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~-q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~ 691 (1223)
.+.++......+|++.+|||||||++.+.+.++.+.....+++ ..+++..+.....++..++++++++++++.+.....
T Consensus 228 ~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~~~~~~ 307 (449)
T PRK10337 228 ARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNLQD 307 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3444444556789999999999999999999988765444443 456888899999999999999999999998877667
Q ss_pred eeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccc
Q 000920 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771 (1223)
Q Consensus 692 ~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~ 771 (1223)
..++++.+++++++..+...+..+++++.+..++. +..+.+|+..+.+++.||++||+||++++|.|.|.+..
T Consensus 308 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~------ 380 (449)
T PRK10337 308 VAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA------ 380 (449)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe------
Confidence 78999999999999999999999999999887643 33567999999999999999999999888887765521
Q ss_pred cccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcC
Q 000920 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851 (1223)
Q Consensus 772 ~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFe 851 (1223)
..++|+|+|+|||++.++++|+
T Consensus 381 ----------------------------------------------------------~~i~i~D~G~Gi~~~~~~~if~ 402 (449)
T PRK10337 381 ----------------------------------------------------------RNFTVRDNGPGVTPEALARIGE 402 (449)
T ss_pred ----------------------------------------------------------eEEEEEECCCCCCHHHHHHhcc
Confidence 2488999999999999999999
Q ss_pred CCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 000920 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901 (1223)
Q Consensus 852 pF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~L 901 (1223)
||++.+. +..+|+||||+||++++++|||+|.++|.+++|++|++++
T Consensus 403 ~f~~~~~---~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 403 RFYRPPG---QEATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred cccCCCC---CCCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 9998653 2346999999999999999999999999999999998763
No 29
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=4.5e-28 Score=275.70 Aligned_cols=219 Identities=31% Similarity=0.445 Sum_probs=193.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDT--ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~--~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~ 698 (1223)
.+.+|++.++|||||||++|.++++++... ..++...++++.+...+.++..++++++++++++.+.......++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 345799999999999999999999988654 445566788999999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhh
Q 000920 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778 (1223)
Q Consensus 699 ~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~ 778 (1223)
+++..+...+......+++.+.+.+. . +..+.+|+..|.+|+.||++||+||++.++.|.|.+...++
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~-~-~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~---------- 260 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEID-G-GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGG---------- 260 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCC-C-CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcCC----------
Confidence 99999999999999999999988873 2 34678999999999999999999999878888777643221
Q ss_pred hhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC
Q 000920 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858 (1223)
Q Consensus 779 ~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~ 858 (1223)
.+.|.|.|+|+|||++.++++|+||++.+.
T Consensus 261 --------------------------------------------------~~~i~i~d~G~gi~~~~~~~if~~~~~~~~ 290 (333)
T TIGR02966 261 --------------------------------------------------GAEFSVTDTGIGIAPEHLPRLTERFYRVDK 290 (333)
T ss_pred --------------------------------------------------EEEEEEEecCCCCCHHHHhhhccCceecCc
Confidence 377999999999999999999999998876
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~L 901 (1223)
..+...+|+||||+||+.+++.|||+|++.|.+++||+|++++
T Consensus 291 ~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 291 SRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred ccccCCCCCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 6666678999999999999999999999999999999999864
No 30
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.96 E-value=4.9e-27 Score=281.49 Aligned_cols=227 Identities=25% Similarity=0.389 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000920 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691 (1223)
Q Consensus 612 k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~ 691 (1223)
..+.++....+.+|++++|||+||||++|.+.++++........ .+..+....+++..+|++++++++.+.. ..+.
T Consensus 233 ~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~~---~~~~i~~~~~~l~~~i~~l~~~~~~~~~-~~~~ 308 (461)
T PRK09470 233 VTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGESK---ELERIETEAQRLDSMINDLLVLSRNQQK-NHLE 308 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCChH---HHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccc
Confidence 34445555567789999999999999999999998865443322 4566778899999999999999998765 3567
Q ss_pred eeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccc
Q 000920 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771 (1223)
Q Consensus 692 ~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~ 771 (1223)
..++++.+++++++..+...+..+++.+.+...+ .+..+.+|+..+.+++.||++||+||++ +.|.|.+...++
T Consensus 309 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~l~~~l~nli~NA~~~~~--~~i~i~~~~~~~--- 382 (461)
T PRK09470 309 RETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPP-GPWPINGNPNALASALENIVRNALRYSH--TKIEVAFSVDKD--- 382 (461)
T ss_pred cceecHHHHHHHHHHHHHHHHHHCCCeEEEecCC-cceEEEECHHHHHHHHHHHHHHHHHhCC--CcEEEEEEEECC---
Confidence 7889999999999999888888889988887433 2446789999999999999999999984 456666543221
Q ss_pred cccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcC
Q 000920 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851 (1223)
Q Consensus 772 ~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFe 851 (1223)
.+.|+|+|+|+||+++.++++|+
T Consensus 383 ---------------------------------------------------------~~~i~V~D~G~Gi~~~~~~~if~ 405 (461)
T PRK09470 383 ---------------------------------------------------------GLTITVDDDGPGVPEEEREQIFR 405 (461)
T ss_pred ---------------------------------------------------------EEEEEEEECCCCCCHHHHHHhcC
Confidence 47899999999999999999999
Q ss_pred CCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 852 pF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
||++.+...++..+|+||||+||+++++.|||++.+.|.++.||+|++++|+..
T Consensus 406 ~~~~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 406 PFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLYK 459 (461)
T ss_pred CCccCCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCCC
Confidence 999988777777789999999999999999999999999999999999999753
No 31
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.96 E-value=7.7e-27 Score=278.39 Aligned_cols=218 Identities=23% Similarity=0.344 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000920 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLE 689 (1223)
Q Consensus 610 e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~ 689 (1223)
++.++.++..+.+..|++++||||||||+.|.+.++++.+. .....+.+....+++..++++++++++.+.+
T Consensus 217 ~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~~--- 288 (435)
T PRK09467 217 QMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFIDYLRTGQE--- 288 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---
Confidence 34445566667788999999999999999999988877432 2234456778889999999999999987643
Q ss_pred cceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCc
Q 000920 690 PEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV 769 (1223)
Q Consensus 690 l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~ 769 (1223)
....++++.+++++++..+. ..+..+.+.++.. +..+.+|+..|++|+.||++||+||+ +|.|.|++...+
T Consensus 289 ~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~--~~~i~i~~~~~~-- 359 (435)
T PRK09467 289 MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG--NGWIKVSSGTEG-- 359 (435)
T ss_pred CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC--CCeEEEEEEecC--
Confidence 34578899999999887654 3445555555443 33688999999999999999999998 467777664321
Q ss_pred cccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhh
Q 000920 770 RSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849 (1223)
Q Consensus 770 ~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rL 849 (1223)
..+.|+|+|+|+||+++.++++
T Consensus 360 ----------------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~~ 381 (435)
T PRK09467 360 ----------------------------------------------------------KRAWFQVEDDGPGIPPEQLKHL 381 (435)
T ss_pred ----------------------------------------------------------CEEEEEEEecCCCcCHHHHHHh
Confidence 1478999999999999999999
Q ss_pred cCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 850 FepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
|+||++.+... ..+|+||||+||+++++.|||+|.+.|.+++|++|++++|+.
T Consensus 382 ~~~f~~~~~~~--~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 382 FQPFTRGDSAR--GSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred cCCcccCCCCC--CCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 99999987643 347999999999999999999999999999999999999974
No 32
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-27 Score=258.80 Aligned_cols=223 Identities=27% Similarity=0.449 Sum_probs=182.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHH
Q 000920 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699 (1223)
Q Consensus 620 ~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ 699 (1223)
++-+.+..+++|||||||.||.|.+++|...-.++..++|.+.|.+.+++|.+|++.+.-++- .-..+..++|++.
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHH
Confidence 355678999999999999999999999987777777999999999999999999998855542 2344566899999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccC----CCCeEEEEEEEccCccccccc
Q 000920 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQ----DKGHIFVSVHLADDVRSKVDV 775 (1223)
Q Consensus 700 ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~----~~G~I~V~v~~~~~~~~~~~~ 775 (1223)
+++.|..+....+ ..++.+.-++++++|. +.+|+++|.|++.||+.||..+-. ++|.|.++.+..-..
T Consensus 206 VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~------ 277 (363)
T COG3852 206 VLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL------ 277 (363)
T ss_pred HHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE------
Confidence 9999999877655 3578998899999997 669999999999999999999863 247887766321100
Q ss_pred hhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcc
Q 000920 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855 (1223)
Q Consensus 776 ~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q 855 (1223)
++ .....+..+.+.|.|+|+|||++.++++|.||..
T Consensus 278 ---------------------~i-----------------------~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs 313 (363)
T COG3852 278 ---------------------TI-----------------------AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVS 313 (363)
T ss_pred ---------------------Ec-----------------------cCceeEeeeeeEEecCCCCCChHHhhhccccccc
Confidence 00 0011223467889999999999999999999983
Q ss_pred cCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 856 ~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
.+.+||||||+|+++++..|||.|+++|.|| .|+|++.+|...
T Consensus 314 ------~r~~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 314 ------GREGGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred ------cCCCCccccHHHHHHHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 2347999999999999999999999999997 599999999865
No 33
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=2.9e-26 Score=275.08 Aligned_cols=220 Identities=27% Similarity=0.457 Sum_probs=194.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~l 700 (1223)
...+|++.++||+|||++.+.+.++++.+....+...+++..+.....++..++++++++++++.........++++.++
T Consensus 255 ~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (475)
T PRK11100 255 YVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAAL 334 (475)
T ss_pred HHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHH
Confidence 34578999999999999999999999887555666778999999999999999999999999998887778899999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhh
Q 000920 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780 (1223)
Q Consensus 701 l~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l 780 (1223)
++++...+...+..+++.+.+.++ +..+.+|...|.+++.||+.||+||+.++|.|.|++...++
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~~~------------ 399 (475)
T PRK11100 335 LEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVDGE------------ 399 (475)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCC------------
Confidence 999999999999999999988765 34577899999999999999999999878888888764321
Q ss_pred hhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC
Q 000920 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860 (1223)
Q Consensus 781 ~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st 860 (1223)
.+.|+|+|+|+|||++.++++|+||++.+..
T Consensus 400 ------------------------------------------------~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~- 430 (475)
T PRK11100 400 ------------------------------------------------QVALSVEDQGPGIPDYALPRIFERFYSLPRP- 430 (475)
T ss_pred ------------------------------------------------EEEEEEEECCCCCCHHHHHHHHHHHccCCCC-
Confidence 5789999999999999999999999976542
Q ss_pred CCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 861 sr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
....+|+||||+||+++++.|||+|.++|.++.||+|.+.+|..
T Consensus 431 ~~~~~~~GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 431 ANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred CCCCCCcchhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 23457999999999999999999999999999999999999863
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=9.9e-27 Score=269.33 Aligned_cols=218 Identities=28% Similarity=0.464 Sum_probs=176.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~l 700 (1223)
+..+|++.+||||||||++|.|+++++.+...++...++++.+..++.++..++++++++.+.. ...+.++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~------~~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPG------THVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCC------CCccccHHHH
Confidence 4578999999999999999999999988766667778899999999999999999999775532 2346799999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcc-CCCCeEEEEEEEccCccccccchhhh
Q 000920 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFT-QDKGHIFVSVHLADDVRSKVDVKDKV 779 (1223)
Q Consensus 701 l~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT-~~~G~I~V~v~~~~~~~~~~~~~~~~ 779 (1223)
++.+...+.... .+++.+.+..++..| .+.+|+.+|.||+.||++||+||+ +.+|.|.|.+.......
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~--------- 271 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT--------- 271 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc---------
Confidence 999888776554 467888877766655 467899999999999999999998 67788877653211100
Q ss_pred hhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCC
Q 000920 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS 859 (1223)
Q Consensus 780 l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~s 859 (1223)
.........+.|.|.|+|+|||++.++++|+||++.
T Consensus 272 -----------------------------------------~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~--- 307 (348)
T PRK11073 272 -----------------------------------------LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSG--- 307 (348)
T ss_pred -----------------------------------------cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccC---
Confidence 000000114679999999999999999999999843
Q ss_pred CCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 860 TSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 860 tsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
+.+|+||||+|||.+++.|||+|+++|.+|+ |+|++.+|+
T Consensus 308 ---~~~g~GlGL~i~~~iv~~~gG~i~~~s~~~~-~~f~i~lP~ 347 (348)
T PRK11073 308 ---REGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred ---CCCCccCCHHHHHHHHHHcCCeEEEEecCCc-eEEEEEEec
Confidence 2469999999999999999999999999885 999999996
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.94 E-value=4.5e-25 Score=247.79 Aligned_cols=217 Identities=42% Similarity=0.738 Sum_probs=185.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcceeeecHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR-LEPEFVPFHLHD 699 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgk-l~l~~~~fdL~~ 699 (1223)
.+..|++.++||+|||++++.+.++++.....+ .+..++..+....+++..++++++++++.+.+. .......+++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 478899999999999999999998866544222 267788888889999999999999999998873 444467788999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhh
Q 000920 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779 (1223)
Q Consensus 700 ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~ 779 (1223)
+++++...+......+++.+....+ .+..+.+|+.++.||+.||++||+||++ ++.|.|.+...++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~~~----------- 258 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQDDE----------- 258 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCC-CCeEEEEEEecCC-----------
Confidence 9999999999988888888886544 3346789999999999999999999997 8888887753221
Q ss_pred hhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCC
Q 000920 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS 859 (1223)
Q Consensus 780 l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~s 859 (1223)
.+.++|.|+|+||+++.++++|+||++.+..
T Consensus 259 -------------------------------------------------~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~ 289 (336)
T COG0642 259 -------------------------------------------------QVTISVEDTGPGIPEEELERIFEPFFRTDKS 289 (336)
T ss_pred -------------------------------------------------eEEEEEEcCCCCCCHHHHHHhccCeeccCCC
Confidence 4789999999999999999999999977654
Q ss_pred CCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 860 TSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 860 tsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
.+ |+||||+||+.+++.|||+|.++|.+|.||+|++++|...
T Consensus 290 ~~----g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 290 RS----GTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred CC----CCCccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 32 9999999999999999999999999999999999999864
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=1.6e-25 Score=275.14 Aligned_cols=215 Identities=27% Similarity=0.530 Sum_probs=188.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~l 700 (1223)
+..+|++.++||+||||+.|.|+++++.....+....+++..+....+++..++++++++++.+.. ...++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 457899999999999999999999998776667777889999999999999999999999987543 3468999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhh
Q 000920 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780 (1223)
Q Consensus 701 l~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l 780 (1223)
++++...+......+++.+.+.+++..+ .+.+|+..|.|++.||+.||+||+..+|.|.|++...++
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~------------ 531 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSD------------ 531 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCC------------
Confidence 9999999998878899999888876655 467899999999999999999998778888887753221
Q ss_pred hhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC
Q 000920 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860 (1223)
Q Consensus 781 ~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st 860 (1223)
..+.|+|+|+|+|||++.++++|+||++.+
T Consensus 532 -----------------------------------------------~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~--- 561 (607)
T PRK11360 532 -----------------------------------------------GQVAVSIEDNGCGIDPELLKKIFDPFFTTK--- 561 (607)
T ss_pred -----------------------------------------------CEEEEEEEeCCCCCCHHHHhhhcCCceeCC---
Confidence 027899999999999999999999999543
Q ss_pred CCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 861 sr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
..|+||||++++.++++|||+|+++|.+|+||+|++++|+..
T Consensus 562 ---~~g~glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 562 ---AKGTGLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred ---CCCCchhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCCC
Confidence 358999999999999999999999999999999999999854
No 37
>PF03924 CHASE: CHASE domain; InterPro: IPR006189 The CHASE domain is an extracellular domain of 200-230 amino acids, which is found in transmembrane receptors from bacteria, lower eukaryotes and plants. It has been named CHASE (Cyclases/Histidine kinases Associated Sensory Extracellular) because of its presence in diverse receptor-like proteins with histidine kinase and nucleotide cyclase domains. The CHASE domain always occurs N-terminally in extracellular or periplasmic locations, followed by an intracellular tail housing diverse enzymatic signalling domains such as histidine kinase (IPR005467 from INTERPRO), adenyl cyclase, GGDEF-type nucleotide cyclase and EAL-type phosphodiesterase domains, as well as non-enzymatic domains such PAS (IPR000014 from INTERPRO), GAF (IPR003018 from INTERPRO), phosphohistidine and response regulatory domains. The CHASE domain is predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides, and mediate signal transduction through the respective receptors [, ]. The CHASE domain has a predicted alpha+beta fold, with two extended alpha helices on both boundaries and two central alpha helices separated by beta sheets. The termini are less conserved compared with the central part of the domain, which shows strongly conserved motifs.; PDB: 3T4L_B 3T4K_B 3T4S_B 3T4Q_A 3T4J_B 3T4T_B 3T4O_A.
Probab=99.93 E-value=8.7e-26 Score=241.62 Aligned_cols=186 Identities=29% Similarity=0.467 Sum_probs=139.6
Q ss_pred CCCCCHHHHHHHHHH--hhhcCCCccceeeccccCchhHHHHHHHhccceeeeccccccccccCCCCCCCCCCCCCccce
Q 000920 337 PSAVDQKTFGEYTER--TAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAP 414 (1223)
Q Consensus 337 ~~~vd~~~F~~~t~~--~~~~~p~i~gv~~~~~V~~~eR~~fE~~~~~~i~~~~~~~~~i~~~~~~~~~~p~~~r~~Y~P 414 (1223)
++.|++++|..|++. ++.++|++.+++|+|+|.+++|++||+++. ....+++.|+ |.+.+++|+|
T Consensus 2 s~~v~~~eF~~f~~~~~~~~~~~~i~~l~w~~~V~~~~r~~fe~~~~----~~~~~~f~i~---------~~~~~~~~~p 68 (193)
T PF03924_consen 2 SEEVTREEFERFSRSLQLLQRHPGIQALAWAPRVPPEEREAFEAQLR----AEGFPDFRIR---------PDGPRDEYFP 68 (193)
T ss_dssp S----HHHHHHHHHH--TGGGSTTEEEEEEEE-EEGGGHHHHHHHHT----------S--B---------TTS--SEE-B
T ss_pred CCccCHHHHHHHHHHHhHhhhCchheEEEEeccCCHHHHHHHHHHHh----hhcccceEee---------eCCCCCCceE
Confidence 578999999999999 999999999999999999999999999964 3334445444 3447999999
Q ss_pred eeeccccc--cceeeeccCCChhhHHHHHHHHHcCCcccccceeecccC--CceEEEEEEeeccCCCCCCCHHHHHHhhh
Q 000920 415 VIFSQETV--SHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSN--HLGVVLTFAVYNTDLPQDATPEQRIEATL 490 (1223)
Q Consensus 415 vi~~~~~~--~~~~g~Dm~s~~~rr~ai~~Ar~tg~~~lt~p~~L~~~~--~~G~~l~~pvy~~~~~~~~~~~~r~~a~~ 490 (1223)
|.|.+|.. ..++|+|++|+|.||++|.+|++||++++|+|++|++.+ +.|++++.|||..+.+...++++|..+++
T Consensus 69 v~yi~P~~~n~~~lG~Dl~s~p~~~~al~~A~~tg~~~~s~p~~L~~~~~~~~g~l~~~PVy~~~~~~~~~~~~r~~~~~ 148 (193)
T PF03924_consen 69 VTYIEPLEGNEAALGLDLASDPERREALERARDTGEPVASGPIRLVQGGDQQPGFLLFAPVYDRDGPPPSTPADRRRAFW 148 (193)
T ss_dssp EEEE-GGG--GGGBTBBGGGSHHHHHHHHHHHHHSS-EE--SEE-TTT----EEEEEEEEEE-TT--SS--HHHHHHTEE
T ss_pred EEEeecchhHHhccCcCcCCCHHHHHHHHHHHHhCCeEEeccEEccCCCCcCcEEEEEeeeecCCCCCCCChhHhhhcee
Confidence 98877655 679999999999999999999999999999999999865 59999999999776667788999999999
Q ss_pred eEEEEeeehHHHHHHHHHhhhccceEEEEEeecCCCCCCccccCC
Q 000920 491 GYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGP 535 (1223)
Q Consensus 491 G~v~~~~~v~~l~~~~l~~~~~~~~i~v~vyd~~~~~~~~~~y~~ 535 (1223)
||+.++|++++|++.++........+.+.+||.+...++..+|++
T Consensus 149 G~v~~v~~~~~l~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ly~s 193 (193)
T PF03924_consen 149 GFVSAVFRVDDLFESALSELSSEDGLDLRLYDGDSGSDPELLYQS 193 (193)
T ss_dssp EEEEEEEEHHHHHHHHHHTSTTGGGEEEEEEE-SSTTS-EEEES-
T ss_pred EEEEEEEEHHHHHHHHhhhccccCcEEEEEEECCCCCCCCcccCc
Confidence 999999999999999987765335699999998777777778864
No 38
>PRK13560 hypothetical protein; Provisional
Probab=99.93 E-value=6.3e-25 Score=280.80 Aligned_cols=213 Identities=15% Similarity=0.216 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000920 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESG 686 (1223)
Q Consensus 607 el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesg 686 (1223)
+.+++.++++++..+|++|+++|||||||||++|.|+++++.+...++....++..+......+..+++.++..
T Consensus 590 erK~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------ 663 (807)
T PRK13560 590 ERKHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS------ 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 33344455566677899999999999999999999999998877677777777666665555555555544321
Q ss_pred CCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCC---CeEEEEE
Q 000920 687 RLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDK---GHIFVSV 763 (1223)
Q Consensus 687 kl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~---G~I~V~v 763 (1223)
....++++.++++++...+......+...+.+.++...+.....+...+.|||.||++||+||+..+ |.|.|++
T Consensus 664 ---~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~ 740 (807)
T PRK13560 664 ---EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEI 740 (807)
T ss_pred ---ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEE
Confidence 2345789999999999988877766666666666554444445567788999999999999998543 5666665
Q ss_pred EEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCH
Q 000920 764 HLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPL 843 (1223)
Q Consensus 764 ~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~ 843 (1223)
...+ ...+.|+|+|||+|||+
T Consensus 741 ~~~~-----------------------------------------------------------~~~v~i~V~D~G~GI~~ 761 (807)
T PRK13560 741 REQG-----------------------------------------------------------DGMVNLCVADDGIGLPA 761 (807)
T ss_pred EEcC-----------------------------------------------------------CCEEEEEEEeCCCcCCc
Confidence 4221 11578999999999998
Q ss_pred HhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 844 EAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 844 e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
+.. ...|+||||+|||+||++|||+|+|+|. +||+|+|+||+..
T Consensus 762 ~~~----------------~~~~~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~~ 805 (807)
T PRK13560 762 GFD----------------FRAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMSP 805 (807)
T ss_pred ccc----------------ccccCCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCCC
Confidence 731 1247889999999999999999999994 7999999999753
No 39
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.92 E-value=7.4e-24 Score=267.76 Aligned_cols=204 Identities=24% Similarity=0.360 Sum_probs=165.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA-AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~-~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ 699 (1223)
+.+++.+.++||||||++.+..+++.......++ .+.++++.+.++.+++..+++++.+. ....+..++++.+
T Consensus 474 ~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~------~~~~~~~~~~l~~ 547 (679)
T TIGR02916 474 AFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSK------GLEEEKLCVDLVD 547 (679)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccCCccccHHH
Confidence 4467889999999999999988888766544444 45567888888888888888776432 2356667899999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhh
Q 000920 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779 (1223)
Q Consensus 700 ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~ 779 (1223)
+++++...+... ...+++ .++++ ..+.+|+.+++||+.||++||+||++++|.|.|++...++
T Consensus 548 ll~~~~~~~~~~--~~~~~l--~~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~----------- 610 (679)
T TIGR02916 548 LLRRAIASKRAQ--GPRPEV--SIDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVERECG----------- 610 (679)
T ss_pred HHHHHHHHhhhh--cCCceE--EeCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcCC-----------
Confidence 999998876542 233344 33333 3578999999999999999999999888888887753221
Q ss_pred hhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHh-HhhhcCCCcccCC
Q 000920 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA-QVRIFTPFMQADS 858 (1223)
Q Consensus 780 l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~-~~rLFepF~q~d~ 858 (1223)
.+.|+|+|+|+|||++. ++++|+||++.+
T Consensus 611 -------------------------------------------------~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~- 640 (679)
T TIGR02916 611 -------------------------------------------------AARIEIEDSGCGMSPAFIRERLFKPFDTTK- 640 (679)
T ss_pred -------------------------------------------------EEEEEEEEcCCCcChHHHHHhcCCCCCCCC-
Confidence 57899999999999999 999999998543
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lp 902 (1223)
.+|+||||+|||++++.|||+|+++|.+|+||+|++++|
T Consensus 641 -----~~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 641 -----GAGMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred -----CCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 269999999999999999999999999999999999987
No 40
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.90 E-value=2.3e-22 Score=246.07 Aligned_cols=196 Identities=27% Similarity=0.368 Sum_probs=138.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHH
Q 000920 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLD 702 (1223)
Q Consensus 623 s~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~ 702 (1223)
.++++.++||+||||++|.|++++... .+..+++..+ +......++++++..+ . .++.
T Consensus 340 ~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~-----~~~~ 397 (542)
T PRK11086 340 ADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKT---ANNYQEEIGSLLGKIK----------S-----PVIA 397 (542)
T ss_pred HHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHH---HHHHHHHHHHHHHhcc----------C-----HHHH
Confidence 456788999999999999999987432 1222333222 2222223333332111 0 1122
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCCCceE-EeCHHHHHHHHHHHHHHHHhccC--CCCeEEEEEEEccCccccccchhhh
Q 000920 703 NVLSLFSSKANQKGIELAIYVSDRVPEVV-IGDPGRFRQIITNLVGNSIKFTQ--DKGHIFVSVHLADDVRSKVDVKDKV 779 (1223)
Q Consensus 703 ~vl~~f~~~a~~k~I~l~v~v~~~~p~~v-~gD~~rL~QIL~NLLsNAIKfT~--~~G~I~V~v~~~~~~~~~~~~~~~~ 779 (1223)
..+......+.++++.+.+..++..|... ..+...|.||+.||++||+||+. +++.|.|++...+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~------------ 465 (542)
T PRK11086 398 GFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRN------------ 465 (542)
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcC------------
Confidence 22233344677889988887765555322 23446899999999999999974 3566766654321
Q ss_pred hhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCC
Q 000920 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS 859 (1223)
Q Consensus 780 l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~s 859 (1223)
..+.|+|+|+|+|||++.++++|+||+..
T Consensus 466 ------------------------------------------------~~~~i~V~D~G~gi~~~~~~~iF~~~~~~--- 494 (542)
T PRK11086 466 ------------------------------------------------GWLHCEVSDDGPGIAPDEIDAIFDKGYST--- 494 (542)
T ss_pred ------------------------------------------------CEEEEEEEECCCCCCHHHHHHHHhCCCcc---
Confidence 15789999999999999999999999842
Q ss_pred CCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccC
Q 000920 860 TSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906 (1223)
Q Consensus 860 tsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~ 906 (1223)
+.+|+||||+|||.+++.|||+|+++|.+|+||+|+|++|+...
T Consensus 495 ---~~~g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~~ 538 (542)
T PRK11086 495 ---KGSNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDGE 538 (542)
T ss_pred ---CCCCCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCCC
Confidence 24699999999999999999999999999999999999998643
No 41
>COG3614 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.88 E-value=3.5e-21 Score=211.39 Aligned_cols=230 Identities=14% Similarity=0.168 Sum_probs=187.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHH
Q 000920 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQK 343 (1223)
Q Consensus 264 ~~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~d~~a~~lq~~~~~~~~~~~aL~~l~~~~~~~~~~~~vd~~ 343 (1223)
|+++.-++..++++++|+.++..+..-.++.-|..|...+|.++.+|++.++.+.+-+.+-.+||.+ +..+|++.
T Consensus 10 ~~~~~pl~~~i~~LLltl~~~g~a~~~t~~~sr~~fe~~A~~~~nal~~rv~~~~~~l~st~a~f~s-----~~~~it~~ 84 (348)
T COG3614 10 VRVWVPLLVLIVSLLLTLTAAGLAYSLTLEQSRTLFERLADRQTNALQQRVDLDQHLLRSTRAFFRS-----STSDITRR 84 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccCCCcHH
Confidence 4455555555566777777777777777777888899999999999999999999999999999975 36689999
Q ss_pred HHHHHHHHhhhcCCCccceeeccccCchhHHHHHHHhccceeeeccccccccccCCCCCCCC-CCCCCccceeeeccccc
Q 000920 344 TFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDP-APVQDEYAPVIFSQETV 422 (1223)
Q Consensus 344 ~F~~~t~~~~~~~p~i~gv~~~~~V~~~eR~~fE~~~~~~i~~~~~~~~~i~~~~~~~~~~p-~~~r~~Y~Pvi~~~~~~ 422 (1223)
+|+.|+. ++.-.-.+.|+.|.+.|...+++.||+.+. .-..+++++..-...+...| .+.+++||||.|.+|-+
T Consensus 85 ~Fr~fs~-~ld~~~~~~~~q~igfv~~~~~e~~ear~~----~~~l~~~~~~~p~~~~~i~pl~t~~~~rypI~~iePl~ 159 (348)
T COG3614 85 EFRRFSL-TLDGDQSFIALQWIGFVRPVQAETFEARLQ----QDFLENFQPTVPKTGEIIYPLGTDDPARYPIQYIEPLN 159 (348)
T ss_pred HHHHhhh-hhcccccchhhhcccccchhhhccchhhhh----hhhhhcCCCcccCCCcccccCCCCCcceeeeEeecCCC
Confidence 9999998 777778899999999999999999999852 22334555555555566778 78899999998887754
Q ss_pred ---cceeeeccCCChhhHHHHHHHHHcCCcccccceeecccC-----CceEEEEEEeeccCCCCCCCHHHHHHhhheEEE
Q 000920 423 ---SHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSN-----HLGVVLTFAVYNTDLPQDATPEQRIEATLGYLG 494 (1223)
Q Consensus 423 ---~~~~g~Dm~s~~~rr~ai~~Ar~tg~~~lt~p~~L~~~~-----~~G~~l~~pvy~~~~~~~~~~~~r~~a~~G~v~ 494 (1223)
..++||||+|+|.||+|+..|++++...+|+|++|+|.. ..|++++.|||....+....+.++ .++||++
T Consensus 160 ~~N~~aLGfDm~SE~~rR~A~d~al~n~q~~aT~pv~LvQ~~g~~q~~~gfLv~~Pv~~s~~~~~~~~gq~--~l~Gfl~ 237 (348)
T COG3614 160 YDNRKALGFDMESEPFRRAAADEALENRQPHATGPVTLVQGGGDKQIVKGFLVYMPVFRSGDDESPLPGQA--VLVGFLY 237 (348)
T ss_pred ccchhhhcchhccCHHHHHHHHHHHhcCCCcccCceeeeecccccccccceEEEEeeeccCCCCCCCcchh--hhhhhHH
Confidence 569999999999999999999999999999999999842 368999999998766555544333 4679999
Q ss_pred EeeehHHHHHH
Q 000920 495 ASYDVPSLVEK 505 (1223)
Q Consensus 495 ~~~~v~~l~~~ 505 (1223)
..+...+++..
T Consensus 238 ~~~~~~~~~qs 248 (348)
T COG3614 238 LATRFEKLVQS 248 (348)
T ss_pred HHHHHhhhhhh
Confidence 88888776653
No 42
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.88 E-value=4.7e-21 Score=235.79 Aligned_cols=197 Identities=20% Similarity=0.264 Sum_probs=144.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHH
Q 000920 624 QFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDN 703 (1223)
Q Consensus 624 ~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~ 703 (1223)
+.+..++||++|||++|.|++++-. ..+..+.+...+..+..+++++...-+ ...+...
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~~-------~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~ 398 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMKE-------YDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGL 398 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHH
Confidence 3566789999999999999887531 223556666677777777777655322 1122222
Q ss_pred HHHHHHHHHHhcCcEEEEEecCCCCc-eEEeCHHHHHHHHHHHHHHHHhcc---CCC-CeEEEEEEEccCccccccchhh
Q 000920 704 VLSLFSSKANQKGIELAIYVSDRVPE-VVIGDPGRFRQIITNLVGNSIKFT---QDK-GHIFVSVHLADDVRSKVDVKDK 778 (1223)
Q Consensus 704 vl~~f~~~a~~k~I~l~v~v~~~~p~-~v~gD~~rL~QIL~NLLsNAIKfT---~~~-G~I~V~v~~~~~~~~~~~~~~~ 778 (1223)
+. .....++++++.+.+........ ....|+..|.||+.||++||+||. +++ +.|.|.+...+
T Consensus 399 l~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~----------- 466 (545)
T PRK15053 399 LF-GKVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEG----------- 466 (545)
T ss_pred HH-HHHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECC-----------
Confidence 22 22345677888887754433211 235699999999999999999994 322 45665543211
Q ss_pred hhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC
Q 000920 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858 (1223)
Q Consensus 779 ~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~ 858 (1223)
..+.|+|+|+|+|||++.++++|+|||..+
T Consensus 467 -------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk- 496 (545)
T PRK15053 467 -------------------------------------------------DDVVIEVADQGCGVPESLRDKIFEQGVSTR- 496 (545)
T ss_pred -------------------------------------------------CEEEEEEEeCCCCcCHHHHHHHhCCCCCCC-
Confidence 147899999999999999999999999643
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
++..+|+||||+|||++++.|||+|+++|.+|.||+|++++|...
T Consensus 497 --~~~~~g~GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 497 --ADEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred --CCCCCCceeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 334568999999999999999999999999999999999999753
No 43
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.88 E-value=1.3e-20 Score=229.60 Aligned_cols=195 Identities=15% Similarity=0.235 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecH
Q 000920 619 DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD-AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHL 697 (1223)
Q Consensus 619 ~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~-~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL 697 (1223)
+..+.++.+.+.||+||||++|.+..+++.+...+ ++..+..+.+.+.+.++.+.++++++..+- ....++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCH
Confidence 34566888999999999999999999988654433 445577888899999999999999865441 22346899
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchh
Q 000920 698 HDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777 (1223)
Q Consensus 698 ~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~ 777 (1223)
.+.+++++..+..... ++.+.++.+.+.+....+|+..+.|++.|+++||+||++ .+.|.|++...++
T Consensus 373 ~~~l~~l~~~l~~~~~--~~~v~l~~~~~~~~l~~~~~~~L~ril~nlL~NAiKha~-~~~I~I~l~~~~~--------- 440 (495)
T PRK11644 373 EQAIRSLMREMELEDR--GIVSHLDWRIDESALSETQRVTLFRVCQEGLNNIVKHAD-ASAVTLQGWQQDE--------- 440 (495)
T ss_pred HHHHHHHHHHHHHhhc--CceEEEEecCCcccCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEEEEEcCC---------
Confidence 9999999988765544 444444433222223456788899999999999999994 5777776643221
Q ss_pred hhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccC
Q 000920 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857 (1223)
Q Consensus 778 ~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d 857 (1223)
.+.++|+|+|+|||++.
T Consensus 441 ---------------------------------------------------~i~l~V~DnG~Gi~~~~------------ 457 (495)
T PRK11644 441 ---------------------------------------------------RLMLVIEDDGSGLPPGS------------ 457 (495)
T ss_pred ---------------------------------------------------EEEEEEEECCCCCCcCC------------
Confidence 57899999999998651
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 858 ~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
.|+|+||+|+|++++.|||+|+++| ++||+|++++|.
T Consensus 458 -------~~~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 458 -------GQQGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred -------CCCCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 3679999999999999999999999 889999999984
No 44
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.86 E-value=1.5e-20 Score=220.19 Aligned_cols=210 Identities=23% Similarity=0.381 Sum_probs=165.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhc---CCCCH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceee
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMD---TELDA--A-QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVP 694 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~---~~l~~--~-q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~ 694 (1223)
|-++-..-++|||||||+-|.-.++-|.. .++++ + -.++.++|.+...++.+|+++.-+|+|+- ++..++
T Consensus 485 AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP----~p~~e~ 560 (712)
T COG5000 485 AWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP----APKLEK 560 (712)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCc
Confidence 34455566999999999999999988763 23333 2 23578899999999999999999999864 455678
Q ss_pred ecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCC-------CCeEEEEEEEcc
Q 000920 695 FHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQD-------KGHIFVSVHLAD 767 (1223)
Q Consensus 695 fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~-------~G~I~V~v~~~~ 767 (1223)
.||++++.+++.++.. ....+.+...+... |.....|+..|.|++.||+.||..+-.. .+.| +++..+
T Consensus 561 ~dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i--~~~~~~ 635 (712)
T COG5000 561 SDLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALI--RVSLDD 635 (712)
T ss_pred chHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceE--EEEEec
Confidence 8999999999987654 33567787777665 7778889999999999999999998632 1222 222211
Q ss_pred CccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHh
Q 000920 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847 (1223)
Q Consensus 768 ~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~ 847 (1223)
....+++.|.|||.|.|.|.+.
T Consensus 636 ----------------------------------------------------------~~g~i~v~V~DNGkG~p~e~r~ 657 (712)
T COG5000 636 ----------------------------------------------------------ADGRIVVDVIDNGKGFPRENRH 657 (712)
T ss_pred ----------------------------------------------------------CCCeEEEEEecCCCCCChHHhh
Confidence 1125889999999999999999
Q ss_pred hhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeC-CCeEEEEEEEEe
Q 000920 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP-GTGSTFSFTVTF 903 (1223)
Q Consensus 848 rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~-g~GStF~f~Lpl 903 (1223)
++|+||+.. +..||||||+|+|+|+|.|||.|.+...| -.|..+.+.+|.
T Consensus 658 r~~EPYvTt------r~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 658 RALEPYVTT------REKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred hhccCceec------ccccccccHHHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 999999843 23699999999999999999999998874 359999888886
No 45
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.84 E-value=3.3e-20 Score=203.82 Aligned_cols=116 Identities=24% Similarity=0.411 Sum_probs=108.6
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||||||++..+..+...|++.||.|+++.+|++|++.+.. . ||+|++|++||+|||+++|++||+..
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~-~dlviLD~~lP~~dG~~~~~~iR~~~---------- 69 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-Q-PDLVLLDLMLPDLDGLELCRRLRAKK---------- 69 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-C-CCEEEEECCCCCCCHHHHHHHHHhhc----------
Confidence 79999999999999999999999999999999999999875 5 99999999999999999999999531
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
...+|||++||..+.+++..++++||||||+|||++.+|.++|+..+.
T Consensus 70 -----------~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lR 117 (229)
T COG0745 70 -----------GSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLR 117 (229)
T ss_pred -----------CCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHC
Confidence 235799999999999999999999999999999999999999998875
No 46
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-18 Score=196.64 Aligned_cols=211 Identities=23% Similarity=0.345 Sum_probs=172.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHH
Q 000920 623 SQFLATVSHEIRTPMNGVLGMLQ---MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699 (1223)
Q Consensus 623 s~FLA~vSHELRTPLn~IlG~le---lL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ 699 (1223)
.+-+.++||||..|||++..++- ...+...+.....++..|..-.+++-.+||.+-.|+|-.+++-. ..|+++.+
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~--lqpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDES--LQPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--cccccHHH
Confidence 46678899999999999988863 33345566777899999999999999999999999998776544 46899999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEccCccccccchhh
Q 000920 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDK-GHIFVSVHLADDVRSKVDVKDK 778 (1223)
Q Consensus 700 ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~-G~I~V~v~~~~~~~~~~~~~~~ 778 (1223)
+++.+..++..+.+.+.+.+..-. + ..+|.||..+++||+.||+-||+.++... ..|.+.+.-.
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li~pt--D-~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~------------ 594 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLINPT--D-DLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGT------------ 594 (673)
T ss_pred HHHHHHHHHHhhhhhccccccCCc--c-cceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecC------------
Confidence 999999999999988888775432 2 23789999999999999999999987443 3444433210
Q ss_pred hhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC
Q 000920 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858 (1223)
Q Consensus 779 ~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~ 858 (1223)
+...++|.|.|+|.|-|-+..+++|+||..
T Consensus 595 -----------------------------------------------~~e~l~i~i~DnGqGwp~~l~dkLl~PFtt--- 624 (673)
T COG4192 595 -----------------------------------------------EQEMLRIAIIDNGQGWPHELVDKLLTPFTT--- 624 (673)
T ss_pred -----------------------------------------------cccceEEEEecCCCCCchhHHHHhcCCccc---
Confidence 112588999999999999999999999963
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
.+.-|.|||||||..|++.|.|.+.+.|...+|..+.+.+..
T Consensus 625 ---sK~vgLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v 666 (673)
T COG4192 625 ---SKEVGLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQV 666 (673)
T ss_pred ---ccccccccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEee
Confidence 234699999999999999999999999999999987766543
No 47
>PRK13559 hypothetical protein; Provisional
Probab=99.81 E-value=6.1e-19 Score=205.74 Aligned_cols=187 Identities=14% Similarity=0.213 Sum_probs=142.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~l 700 (1223)
++.+|++.++||+||||+.|.|+++++... ....++++.+.....+|..+++++|+.++ ..++++.++
T Consensus 169 ~~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~ 236 (361)
T PRK13559 169 HERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEEL 236 (361)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHH
Confidence 346789999999999999999999988622 22345778888889999999999887543 467899999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeC-HHHHHHHHHHHHHHHHhc---cCCCCeEEEEEEEccCccccccch
Q 000920 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD-PGRFRQIITNLVGNSIKF---TQDKGHIFVSVHLADDVRSKVDVK 776 (1223)
Q Consensus 701 l~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD-~~rL~QIL~NLLsNAIKf---T~~~G~I~V~v~~~~~~~~~~~~~ 776 (1223)
+++++..+... +..+.+..+ .. .+..| ...|.||+.||++||+|| ++.+|.|.|.+.....
T Consensus 237 ~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~-------- 301 (361)
T PRK13559 237 IRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSPE-------- 301 (361)
T ss_pred HHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCC--------
Confidence 99998876532 344444322 11 12222 356999999999999999 6677888887632111
Q ss_pred hhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCccc
Q 000920 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856 (1223)
Q Consensus 777 ~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~ 856 (1223)
...+.+.|.|+|.|++++
T Consensus 302 --------------------------------------------------~~~~~i~v~d~G~~~~~~------------ 319 (361)
T PRK13559 302 --------------------------------------------------GAGFRIDWQEQGGPTPPK------------ 319 (361)
T ss_pred --------------------------------------------------CCeEEEEEECCCCCCCCC------------
Confidence 115789999999997653
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHH-cCCEEEEEEeCCCeEEEEEEEEec
Q 000920 857 DSSTSRTYGGTGIGLSISRCLVEL-MGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 857 d~stsr~~gGTGLGLsI~k~LVel-mgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
..|+|+||.||+.+++. |||+|++++. +.|++|++++|..
T Consensus 320 -------~~~~g~Gl~i~~~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 320 -------LAKRGFGTVIIGAMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred -------CCCCCcHHHHHHHHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 24789999999999997 9999999997 5799999999963
No 48
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.80 E-value=4.2e-19 Score=172.66 Aligned_cols=110 Identities=38% Similarity=0.735 Sum_probs=99.9
Q ss_pred eCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccc
Q 000920 733 GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812 (1223)
Q Consensus 733 gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~ 812 (1223)
||+.+|++|+.||+.||++|+++++.|.|.+...++
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~-------------------------------------------- 36 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDD-------------------------------------------- 36 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETT--------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecC--------------------------------------------
Confidence 799999999999999999999887999998865332
Q ss_pred cccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCC
Q 000920 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892 (1223)
Q Consensus 813 ~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g 892 (1223)
.+.|+|+|+|.|||++.++++|+||++.+. .....+|+||||++|+.++++|+|+|++.+.++
T Consensus 37 ----------------~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~ 99 (111)
T PF02518_consen 37 ----------------HLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSEG 99 (111)
T ss_dssp ----------------EEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETT
T ss_pred ----------------eEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcCC
Confidence 588999999999999999999999998876 334557899999999999999999999999999
Q ss_pred CeEEEEEEEEe
Q 000920 893 TGSTFSFTVTF 903 (1223)
Q Consensus 893 ~GStF~f~Lpl 903 (1223)
.||+|+|++|+
T Consensus 100 ~gt~v~~~~p~ 110 (111)
T PF02518_consen 100 GGTTVTFTLPL 110 (111)
T ss_dssp TEEEEEEEEEG
T ss_pred CcEEEEEEEEC
Confidence 99999999996
No 49
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.75 E-value=2.9e-17 Score=196.35 Aligned_cols=255 Identities=19% Similarity=0.241 Sum_probs=185.0
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
+++++|+++.....+...+...|+.+..+.+..++...+... .++++++|....+.. +..+. +..+...
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-------~~dlvi~d~~~~~~~-g~~l~---~~i~~~~ 72 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICERE-------QPDIILLDVMMPGMD-GFEVC---RRLKSDP 72 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhc-------CCCEEEEeCCCCCCC-HHHHH---HHHHcCc
Confidence 689999999999999889998999999999999998877532 457888887655432 33322 2222211
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchh---H-hhhhcCC----------Cc
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSK---K-LQQKRKK----------PS 1074 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~---~-~~~~~~~----------~~ 1074 (1223)
. ....|.++ ++..............|...++.||+....+...+........ . ....... ..
T Consensus 73 ~---~~~~~ii~-~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (457)
T PRK09581 73 A---TTHIPVVM-VTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLKMVIDELRLRASTNAEIGVTALMIMA 148 (457)
T ss_pred c---cCCCCEEE-EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhccc
Confidence 1 01345444 4333444445556678888999999988777654432211000 0 0000000 00
Q ss_pred cccCCCCcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhh
Q 000920 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENE 1154 (1223)
Q Consensus 1075 ~~~~~~~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~ 1154 (1223)
........+||||||++..+..+..+|.. ++.+..+.+|.+|+..+. .+.||+|++|+.||+|||++++++||+.+.
T Consensus 149 ~~~~~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-~~~~d~vi~d~~~p~~~g~~l~~~i~~~~~- 225 (457)
T PRK09581 149 YANKDEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-ETNYDLVIVSANFENYDPLRLCSQLRSKER- 225 (457)
T ss_pred ccccccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-cCCCCEEEecCCCCCchHhHHHHHHHhccc-
Confidence 11123456899999999999999999965 577788999999999875 478999999999999999999999996431
Q ss_pred hhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1155 ~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
..++|||++|++.+.+...+|+++|++||+.||++.++|...|.+..
T Consensus 226 -------------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~ 272 (457)
T PRK09581 226 -------------------TRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQI 272 (457)
T ss_pred -------------------cCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999998887643
No 50
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.75 E-value=1.7e-16 Score=196.10 Aligned_cols=193 Identities=21% Similarity=0.253 Sum_probs=139.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH----HhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHH
Q 000920 625 FLATVSHEIRTPMNGVLGMLQM----LMDT--ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698 (1223)
Q Consensus 625 FLA~vSHELRTPLn~IlG~lel----L~~~--~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~ 698 (1223)
..+.++||+++|++.++.++.+ +... ...+...+.+..+......+...+.+++...+ ....++++.
T Consensus 363 ~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~ 435 (565)
T PRK10935 363 ERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLG 435 (565)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHH
Confidence 4456899999999888777653 3221 22344456666777777777777777776433 344578999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhh
Q 000920 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778 (1223)
Q Consensus 699 ~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~ 778 (1223)
+.+.+++..+... .++.+.+....+.+....+++.++.|++.||+.||+||++ .|.|.+.+...++
T Consensus 436 ~~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~-~~~i~i~~~~~~~---------- 501 (565)
T PRK10935 436 SALEEMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHAN-ASEIAVSCVTNPD---------- 501 (565)
T ss_pred HHHHHHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEEEEcCC----------
Confidence 9999999988754 3344444332111112234456799999999999999984 6777776643211
Q ss_pred hhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC
Q 000920 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858 (1223)
Q Consensus 779 ~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~ 858 (1223)
..+.++|.|+|+|||++.
T Consensus 502 -------------------------------------------------~~~~i~V~D~G~Gi~~~~------------- 519 (565)
T PRK10935 502 -------------------------------------------------GEHTVSIRDDGIGIGELK------------- 519 (565)
T ss_pred -------------------------------------------------CEEEEEEEECCcCcCCCC-------------
Confidence 157899999999998631
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
..|+|+||+||+++++.|||+|+++|.+|+||+|++++|...
T Consensus 520 -----~~~~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 520 -----EPEGHYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQQ 561 (565)
T ss_pred -----CCCCCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCCC
Confidence 247899999999999999999999999999999999999753
No 51
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.75 E-value=1.3e-16 Score=187.68 Aligned_cols=194 Identities=31% Similarity=0.463 Sum_probs=144.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHH
Q 000920 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNV 704 (1223)
Q Consensus 625 FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~v 704 (1223)
-|...+||.+|-|+.|.|++++=. -++..+|+..+.+.-+ ..++.+.. ++. ...+...
T Consensus 336 aLRaq~HEfmNkLhtI~GLlql~~----yd~a~~~I~~~~~~qq---~~~~~l~~--~i~-------------~~~lAg~ 393 (537)
T COG3290 336 ALRAQSHEFMNKLHTILGLLQLGE----YDDALDYIQQESEEQQ---ELIDSLSE--KIK-------------DPVLAGF 393 (537)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHhhhh---hhHHHHHH--hcc-------------cHHHHHH
Confidence 356679999999999999998732 2233445444433322 22222211 111 2345556
Q ss_pred HHHHHHHHHhcCcEEEEEecCCCCce-EEeCHHHHHHHHHHHHHHHHhccC---CCCeEEEEEEEccCccccccchhhhh
Q 000920 705 LSLFSSKANQKGIELAIYVSDRVPEV-VIGDPGRFRQIITNLVGNSIKFTQ---DKGHIFVSVHLADDVRSKVDVKDKVL 780 (1223)
Q Consensus 705 l~~f~~~a~~k~I~l~v~v~~~~p~~-v~gD~~rL~QIL~NLLsNAIKfT~---~~G~I~V~v~~~~~~~~~~~~~~~~l 780 (1223)
+--...+|+++|+.+.++....+|.. -.-++.-+--|+-||++||+..+- ++..|.++++...
T Consensus 394 LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~------------- 460 (537)
T COG3290 394 LLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRG------------- 460 (537)
T ss_pred HHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecC-------------
Confidence 66666789999999999877665542 234889999999999999999986 4466766664322
Q ss_pred hhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC
Q 000920 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860 (1223)
Q Consensus 781 ~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st 860 (1223)
..+.|+|+|||+|||++.++++|+.-+..+
T Consensus 461 -----------------------------------------------~~lvieV~D~G~GI~~~~~~~iFe~G~Stk--- 490 (537)
T COG3290 461 -----------------------------------------------DELVIEVADTGPGIPPEVRDKIFEKGVSTK--- 490 (537)
T ss_pred -----------------------------------------------CEEEEEEeCCCCCCChHHHHHHHhcCcccc---
Confidence 158999999999999999999999877322
Q ss_pred CCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 861 sr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
..+|.|+||+++|++|+.+||.|+++|+++.||+|++.+|...
T Consensus 491 --~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 491 --NTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred --CCCCCchhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCc
Confidence 2478999999999999999999999999999999999999864
No 52
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.71 E-value=7.1e-17 Score=190.52 Aligned_cols=118 Identities=29% Similarity=0.468 Sum_probs=111.1
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++..|.++..+|...||.|..+.|+.+|++.+... .||+|++|+.||+|||++++++|++..
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~~--------- 74 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSRD--------- 74 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhhC---------
Confidence 4699999999999999999999999999999999999999864 799999999999999999999999753
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~~ 1222 (1223)
.++|||+||++.+.++..++++.||-|||.|||+.++|...|.|.++.
T Consensus 75 -------------~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 75 -------------PDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred -------------CCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999998863
No 53
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.70 E-value=2e-16 Score=152.63 Aligned_cols=111 Identities=34% Similarity=0.558 Sum_probs=104.4
Q ss_pred EEEEecChhHHHHHHHHHhhCCC-EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGA-IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~-~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
||||||++..+..+...|+..|+ .+..+.++.+|++.+.. +.||+||+|+.||+++|.++++.||+..
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~-~~~d~iiid~~~~~~~~~~~~~~i~~~~---------- 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK-HPPDLIIIDLELPDGDGLELLEQIRQIN---------- 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH-STESEEEEESSSSSSBHHHHHHHHHHHT----------
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc-cCceEEEEEeeecccccccccccccccc----------
Confidence 79999999999999999999999 99999999999999964 6799999999999999999999999743
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1217 (1223)
+++|||++|+..+.+...+++++|+++||.||++.++|.++|+
T Consensus 70 ------------~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 70 ------------PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ------------TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ------------ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 3689999999999999999999999999999999999999874
No 54
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.70 E-value=3.1e-16 Score=155.19 Aligned_cols=120 Identities=33% Similarity=0.488 Sum_probs=106.1
Q ss_pred CCcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHH-HHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhh
Q 000920 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR-AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ 1158 (1223)
Q Consensus 1080 ~~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~-eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~ 1158 (1223)
.+.+||+|||++.++..+..+|...|+.+..+.+|. +|++.+.....||+|++|++||+|||+++++++|+.
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~------- 76 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRAR------- 76 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhC-------
Confidence 456899999999999999999999999999999996 999998742259999999999999999999999963
Q ss_pred hhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHH-HHHHHHHHhh
Q 000920 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ-LYTAVARFFM 1221 (1223)
Q Consensus 1159 i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~-L~~~v~r~l~ 1221 (1223)
...+|||++|++........++++|+++|+.||+...+ |...+.+++.
T Consensus 77 ---------------~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 77 ---------------GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred ---------------CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 12578999999999988888899999999999977666 7888887764
No 55
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.69 E-value=7.7e-17 Score=181.32 Aligned_cols=120 Identities=26% Similarity=0.425 Sum_probs=109.8
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
..+||+|||.+.|+..++..|+..||.+..+++|++|++.... +.+|+||+|++||+|||+|++++|+.+.+
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~-~~~dlvllD~~mp~mdg~ev~~~lk~~~p------- 85 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE-EPPDLVLLDVRMPEMDGAEVLNKLKAMSP------- 85 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc-cCCceEEeeccCCCccHHHHHHHHHhcCC-------
Confidence 3579999999999999999999999999999999999998764 56999999999999999999999997543
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
.+.++|||.+||.++.++..+|+++|++|||.||+++.+|..++...+
T Consensus 86 ------------~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 86 ------------STRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred ------------cccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 245899999999999999999999999999999999999999886544
No 56
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.68 E-value=4.7e-16 Score=182.30 Aligned_cols=225 Identities=25% Similarity=0.308 Sum_probs=160.0
Q ss_pred eccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCCcccccCCCeEEEEeccCCccchhhhhc
Q 000920 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKS 1036 (1223)
Q Consensus 957 a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~ 1036 (1223)
+.++..++....+ ..++.+++|..+.+.. +..+...++ .. ..+ ++++.....+...-....
T Consensus 18 a~~g~~~l~~~~~-------~~~~~~lld~~m~~~~-~~~~~~~lk---~~-------~~~-~v~~t~~~~~~~~~~~~~ 78 (435)
T COG3706 18 AKKGLIALAILLD-------HKPDYKLLDVMMPGMD-GFELCRRLK---AE-------PAT-VVMVTALDDSAPRVRGLK 78 (435)
T ss_pred ccchHHHHHHHhc-------CCCCeEEeecccCCcC-chhHHHHHh---cC-------Ccc-eEEEEecCCCCcchhHHh
Confidence 5556666655443 3456777776665543 222222111 11 112 344444455556666777
Q ss_pred CCceeeecccccccccccccCC---CCcchhHhhhhc-C------CCccccCCCCcEEEEEecChhHHHHHHHHHhhCCC
Q 000920 1037 DGIVTLLTKPLRLSVLIGCFQE---DPESSKKLQQKR-K------KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGA 1106 (1223)
Q Consensus 1037 ~g~~~~l~KPl~~s~L~~~l~~---~~~~~~~~~~~~-~------~~~~~~~~~~~rILVVDDn~~n~~vl~~~L~~~G~ 1106 (1223)
.|...+++||+.-+.+...... ............ . .+.... ...++||||||...++..+..+|...|+
T Consensus 79 ~~~~~~l~~~~~~~~~~~r~~~l~~~k~~~de~~~~~~~~~~~~~~~~~~~-~~~~kILvvdD~~~~~~~l~~~L~~~g~ 157 (435)
T COG3706 79 AGADDFLTKPVNDSQLFLRAKSLVRLKCSIDELRLREETGGELGVSPLLPE-DAPKKILVVDDDATQRERLRRILQVEGF 157 (435)
T ss_pred hhhhhhccCCCChHHHHHhhhhhccchhhHHHHhhcccccccccccccccc-ccCceEEEEcCcHHHHHHHHHHHHhccc
Confidence 7888899999876655432211 111111110000 0 111111 1457999999999999999999999999
Q ss_pred EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccC
Q 000920 1107 IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186 (1223)
Q Consensus 1107 ~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~ 1186 (1223)
.+..+.+|++|+..+.+ ..||+||.|+.||+||||++|+++|+.+. ...+|||.+|+..
T Consensus 158 ~v~~a~~~~~Al~~~~e-~~~dlil~d~~mp~~dg~el~~~lr~~~~--------------------t~~ipii~~~~~~ 216 (435)
T COG3706 158 RVVEATDGEEALLQLAE-LPPDLVLLDANMPDMDGLELCTRLRQLER--------------------TRDIPIILLSSKD 216 (435)
T ss_pred eeeeecCHHHHHHHHhc-CCCcEEEEecCCCccCHHHHHHHHhcccc--------------------cccccEEEEeccc
Confidence 99999999999999875 58999999999999999999999997653 3579999999999
Q ss_pred CHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 000920 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222 (1223)
Q Consensus 1187 ~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~~ 1222 (1223)
+.+...++++.|++|||+||++..+|..++.+.++.
T Consensus 217 d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~ 252 (435)
T COG3706 217 DDELVVRAFELGVNDYITKPIEEGELRARLRRQLRR 252 (435)
T ss_pred chHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999887754
No 57
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.68 E-value=6.7e-15 Score=182.84 Aligned_cols=183 Identities=17% Similarity=0.201 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHHHHHHHH
Q 000920 633 IRTPMNGVLGMLQMLM--DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710 (1223)
Q Consensus 633 LRTPLn~IlG~lelL~--~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~vl~~f~~ 710 (1223)
|..+|+.+...+..+. ....+++.++.+..+....+.+...+.+++...+. ...+.++.+.+.+++..|..
T Consensus 373 i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~~~~~~l~~~l~~~~~~~~~ 445 (569)
T PRK10600 373 IAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRL-------QLTEPGLRPALEASCEEFSA 445 (569)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------CcccCCHHHHHHHHHHHHHH
Confidence 3334455544444332 23345677788999999999999999999987654 23457888999999888775
Q ss_pred HHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhhhhhccccccc
Q 000920 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHK 790 (1223)
Q Consensus 711 ~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~ 790 (1223)
.. ++.+.+......+.....++..+.||+.|+++||+||++ .+.|.|.+...+
T Consensus 446 ~~---~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~-a~~i~V~~~~~~----------------------- 498 (569)
T PRK10600 446 RF---GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQ-ASEVVVTVAQNQ----------------------- 498 (569)
T ss_pred Hh---CCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEEEEcC-----------------------
Confidence 54 444444433211111112445699999999999999995 567777664321
Q ss_pred ccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccH
Q 000920 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIG 870 (1223)
Q Consensus 791 ~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLG 870 (1223)
..+.|+|.|+|+|||++. ..|+|+|
T Consensus 499 -------------------------------------~~~~l~V~D~G~Gi~~~~------------------~~~~glG 523 (569)
T PRK10600 499 -------------------------------------NQVKLSVQDNGCGVPENA------------------ERSNHYG 523 (569)
T ss_pred -------------------------------------CEEEEEEEECCCCCCccc------------------cCCCCcc
Confidence 157899999999999752 1367999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 871 LSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 871 LsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
|+||+.+++.|||+|.+.|.+|+||+|++++|..
T Consensus 524 L~i~~~~~~~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 524 LIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCCEEEEEEEecC
Confidence 9999999999999999999999999999999874
No 58
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.64 E-value=1.1e-15 Score=180.16 Aligned_cols=116 Identities=22% Similarity=0.369 Sum_probs=105.3
Q ss_pred EEEEEecChhHHHHHHHHHh--hCCCE-EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALK--KHGAI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~--~~G~~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
+||||||++..|+-++.++. ++|++ |-.|.||+||++.++. ..||+||+||.||+|||+++++.||+..+
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e-~~pDiviTDI~MP~mdGLdLI~~ike~~p------ 75 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE-TQPDIVITDINMPGMDGLDLIKAIKEQSP------ 75 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh-cCCCEEEEecCCCCCcHHHHHHHHHHhCC------
Confidence 79999999999999999987 56875 5679999999999974 78999999999999999999999997543
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.+-+|++|+..+=+.+.+|++.|++|||.||++.++|..++.++..
T Consensus 76 ----------------~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 76 ----------------DTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred ----------------CceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999988753
No 59
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.61 E-value=4.5e-15 Score=153.58 Aligned_cols=117 Identities=24% Similarity=0.359 Sum_probs=108.2
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.-|.||||+...|+.+..+|...||.+.+..++.+.+.... ...+.+++.|+.||+|+|.|+-+++++..
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~-~~~pGclllDvrMPg~sGlelq~~L~~~~--------- 74 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP-LDRPGCLLLDVRMPGMSGLELQDRLAERG--------- 74 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc-CCCCCeEEEecCCCCCchHHHHHHHHhcC---------
Confidence 46899999999999999999999999999999999998853 56799999999999999999999998643
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|++.+.....+++++||-|||.|||+...|+.+|.+.+.
T Consensus 75 -------------~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~ 121 (202)
T COG4566 75 -------------IRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALA 121 (202)
T ss_pred -------------CCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999998764
No 60
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.60 E-value=8.7e-14 Score=172.97 Aligned_cols=146 Identities=22% Similarity=0.370 Sum_probs=113.0
Q ss_pred cHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHH---HHHHHHHHHhcc------------CCCCeEE
Q 000920 696 HLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI---ITNLVGNSIKFT------------QDKGHIF 760 (1223)
Q Consensus 696 dL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QI---L~NLLsNAIKfT------------~~~G~I~ 760 (1223)
.+..+++..-.+....+...+.++.+.+.... +..|+..+.++ |.||+.||++|. +++|.|.
T Consensus 344 p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~~---~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~ 420 (670)
T PRK10547 344 PMEYVFSRFPRLVRDLAGKLGKQVELTLVGSS---TELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLI 420 (670)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCc---eecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCceE
Confidence 45667777777777777766666666554432 45799999999 679999999996 4457777
Q ss_pred EEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCC
Q 000920 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840 (1223)
Q Consensus 761 V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiG 840 (1223)
+++...+ ..+.|+|+|+|.|
T Consensus 421 l~a~~~~------------------------------------------------------------~~v~I~V~DdG~G 440 (670)
T PRK10547 421 LSAEHQG------------------------------------------------------------GNICIEVTDDGAG 440 (670)
T ss_pred EEEEEcC------------------------------------------------------------CEEEEEEEeCCCC
Confidence 7664321 1578999999999
Q ss_pred CCHHhH---------------------hhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEE
Q 000920 841 IPLEAQ---------------------VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899 (1223)
Q Consensus 841 I~~e~~---------------------~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f 899 (1223)
|+++.+ ..||+|||..... .+...|+|+||+|||++++.|||+|.++|.+|+||+|++
T Consensus 441 Id~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i 519 (670)
T PRK10547 441 LNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRI 519 (670)
T ss_pred CCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEE
Confidence 998654 4699997754322 233479999999999999999999999999999999999
Q ss_pred EEEecc
Q 000920 900 TVTFTE 905 (1223)
Q Consensus 900 ~Lpl~~ 905 (1223)
++|+..
T Consensus 520 ~LPltl 525 (670)
T PRK10547 520 LLPLTL 525 (670)
T ss_pred EEechh
Confidence 999864
No 61
>PLN03029 type-a response regulator protein; Provisional
Probab=99.59 E-value=1.5e-14 Score=158.85 Aligned_cols=120 Identities=24% Similarity=0.443 Sum_probs=105.5
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCC-------------------CCccEEEEeCCCCCCCH
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP-------------------HNFDACFMDLQMPEMDG 1141 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~-------------------~~~DlIlmDi~MP~MDG 1141 (1223)
..+||||||+..++..+..+|+..|+.|..+.+|.+|++.+... ..||+||+|+.||+|||
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 45899999999999999999999999999999999999987421 24789999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1142 ~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
+++++.||+... ..++|||++|+....+...+|+++|++|||.||++..+|...+..++
T Consensus 88 ~e~l~~ir~~~~--------------------~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~ 146 (222)
T PLN03029 88 YDLLKKIKESSS--------------------LRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMM 146 (222)
T ss_pred HHHHHHHHhccc--------------------cCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHH
Confidence 999999996421 23689999999999999999999999999999999999977766554
No 62
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.56 E-value=5e-14 Score=153.49 Aligned_cols=117 Identities=26% Similarity=0.324 Sum_probs=105.2
Q ss_pred EEEEEecChhHHHHHHHHHhhCC-CE-EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHG-AI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G-~~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+||||||.+..|.-++.+|...+ ++ +..+.||.+|++.+. ...||+|+||+.||+|||+++++.||+..
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~-~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~-------- 72 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR-ELKPDVVLLDLSMPGMDGLEALKQLRARG-------- 72 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh-hcCCCEEEEcCCCCCCChHHHHHHHHHHC--------
Confidence 69999999999999999999876 76 455667999999865 57899999999999999999999999532
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~~ 1222 (1223)
++++|+++|++.+.+...+++++|+++|+.|..+.++|..+|+..+..
T Consensus 73 --------------p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 73 --------------PDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred --------------CCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 357999999999999999999999999999999999999999987654
No 63
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.54 E-value=4.8e-14 Score=148.71 Aligned_cols=116 Identities=22% Similarity=0.350 Sum_probs=104.5
Q ss_pred EEEEEecChhHHHHHHHHHhhC-CCE-EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKH-GAI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~-G~~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+||||||++....+-+.++++. ||. |-.|.++++|..++.. ..+||||+|+.||+-+|++++..||+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~-~~pDLILLDiYmPd~~Gi~lL~~ir~~--------- 71 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE-FKPDLILLDIYMPDGNGIELLPELRSQ--------- 71 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh-hCCCEEEEeeccCCCccHHHHHHHHhc---------
Confidence 6999999999999999999986 775 5568899999998874 678999999999999999999999963
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..++-||++||..+.++..+++.+|+-|||.|||..+.|.+++.+|..
T Consensus 72 -------------~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~ 119 (224)
T COG4565 72 -------------HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQ 119 (224)
T ss_pred -------------CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHH
Confidence 224569999999999999999999999999999999999999999864
No 64
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.54 E-value=1.2e-13 Score=149.57 Aligned_cols=115 Identities=23% Similarity=0.389 Sum_probs=105.9
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+.. ..||+||+|+.||++||+++++.||+.
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~----------- 70 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDGDGIEFIRDLRQW----------- 70 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHcC-----------
Confidence 79999999999999999999999999999999999987753 679999999999999999999999852
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+...+++++|++||+.||++.++|...+.+.+.
T Consensus 71 ------------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 71 ------------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 24799999999999999999999999999999999999999987764
No 65
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.54 E-value=1.1e-13 Score=151.80 Aligned_cols=116 Identities=17% Similarity=0.246 Sum_probs=104.4
Q ss_pred cEEEEEecChhHHHHHHHHHhhC-CC-EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKH-GA-IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~-G~-~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||||||++..+..+...|... |+ .+..+.+|.+|++.+.. ..||+||+|+.||+|||+++++.||+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~-~~pdlvllD~~mp~~~gle~~~~l~~~~------- 76 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-FKPGLILLDNYLPDGRGINLLHELVQAH------- 76 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCcHHHHHHHHHhcC-------
Confidence 58999999999999999999864 78 47789999999998864 6799999999999999999999999632
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
.++|||++|+....+...+++++|+++|+.||++.++|..+|+++.
T Consensus 77 ---------------~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 77 ---------------YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred ---------------CCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHH
Confidence 2468999999999999999999999999999999999999998763
No 66
>PRK11173 two-component response regulator; Provisional
Probab=99.53 E-value=1.3e-13 Score=151.16 Aligned_cols=116 Identities=22% Similarity=0.398 Sum_probs=106.6
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+||+|+.||++||+++++.||+.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~---------- 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-NDINLVIMDINLPGKNGLLLARELREQ---------- 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-CCCCEEEEcCCCCCCCHHHHHHHHhcC----------
Confidence 479999999999999999999999999999999999998864 679999999999999999999999852
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+....++++|+|||+.||++.++|...+.+.+.
T Consensus 73 -------------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 73 -------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 14799999999999999999999999999999999999988887664
No 67
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.52 E-value=2e-13 Score=147.73 Aligned_cols=116 Identities=28% Similarity=0.432 Sum_probs=107.0
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+. .+.||+|++|+.||+++|+++++.||+..
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~l~~~lr~~~---------- 70 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-EHLPDIAIVDLGLPDEDGLSLIRRWRSND---------- 70 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhcC----------
Confidence 6999999999999999999999999999999999999876 46799999999999999999999998632
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+..+.+....++++|++||+.||++.++|...+...+.
T Consensus 71 ------------~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 71 ------------VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred ------------CCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999999987764
No 68
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.51 E-value=2.3e-13 Score=147.66 Aligned_cols=116 Identities=23% Similarity=0.406 Sum_probs=106.6
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||||||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+||+|+.||.+||+++++.+|+..
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~~~~~~g~~~~~~lr~~~---------- 70 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-GDYDLIILDIMLPDVNGWDIVRMLRSAN---------- 70 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhcC----------
Confidence 69999999999999999999999999999999999987753 6799999999999999999999999632
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+...+++++|++||+.||++.++|..++...+.
T Consensus 71 ------------~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 71 ------------KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred ------------CCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999999988764
No 69
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.50 E-value=3.5e-13 Score=145.54 Aligned_cols=115 Identities=27% Similarity=0.426 Sum_probs=105.8
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||+|||++..+..+...|...|+.|..+.++.+|++.+.. ..||+|++|+.||.++|+++++.||..
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~---------- 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN-QHVDLILLDINLPGEDGLMLTRELRSR---------- 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 479999999999999999999999999999999999988764 679999999999999999999999852
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
.++|||++|+..+.....+++++|++||+.||++.++|...+...+
T Consensus 72 -------------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~ 117 (221)
T PRK10766 72 -------------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLL 117 (221)
T ss_pred -------------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHH
Confidence 2579999999999999999999999999999999999999887765
No 70
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.49 E-value=4e-13 Score=147.17 Aligned_cols=118 Identities=28% Similarity=0.416 Sum_probs=108.1
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
..+||||||++..+..+...|+..|+.+..+.++.++++.+.. +.||+||+|+.||.++|+++++.||...
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~~-------- 75 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR-ESFHLMVLDLMLPGEDGLSICRRLRSQN-------- 75 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 3589999999999999999999999999999999999988764 6799999999999999999999999532
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|++||+.||++.++|...+.+.+.
T Consensus 76 --------------~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~ 122 (239)
T PRK09468 76 --------------NPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred --------------CCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 25799999999999999999999999999999999999999988764
No 71
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.49 E-value=3.6e-13 Score=162.36 Aligned_cols=117 Identities=24% Similarity=0.442 Sum_probs=93.1
Q ss_pred EeCHHHHHHHHHHHHHHHHhccCCCC---eEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccc
Q 000920 732 IGDPGRFRQIITNLVGNSIKFTQDKG---HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWK 808 (1223)
Q Consensus 732 ~gD~~rL~QIL~NLLsNAIKfT~~~G---~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~ 808 (1223)
.+++..|.|++.|||+||++|+..+| .|.|.+...+.
T Consensus 31 ~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~---------------------------------------- 70 (535)
T PRK04184 31 DNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDE---------------------------------------- 70 (535)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccC----------------------------------------
Confidence 35678899999999999999997655 46665542210
Q ss_pred cccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC--CCCCCCcccHHHHHHHHHHHcCCE-E
Q 000920 809 SWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST--SRTYGGTGIGLSISRCLVELMGGE-I 885 (1223)
Q Consensus 809 ~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st--sr~~gGTGLGLsI~k~LVelmgG~-I 885 (1223)
+...+.|+|+|+|+||+++.++++|.+|+..+... ....||+||||++|+.++++|+|. |
T Consensus 71 -----------------~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I 133 (535)
T PRK04184 71 -----------------GKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPV 133 (535)
T ss_pred -----------------CCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcE
Confidence 11146799999999999999999999987654322 234578999999999999999997 9
Q ss_pred EEEEeCCCeE-EEEEEEEecc
Q 000920 886 GFVSEPGTGS-TFSFTVTFTE 905 (1223)
Q Consensus 886 ~v~S~~g~GS-tF~f~Lpl~~ 905 (1223)
++.|.++.|+ .|+|++++..
T Consensus 134 ~V~S~~~~g~~~~~~~l~id~ 154 (535)
T PRK04184 134 RVISSTGGSKKAYYFELKIDT 154 (535)
T ss_pred EEEEecCCCceEEEEEEEecc
Confidence 9999999998 8999988764
No 72
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.49 E-value=4.6e-13 Score=146.97 Aligned_cols=115 Identities=22% Similarity=0.310 Sum_probs=105.7
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||+++|+++++.||+.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-~~~dlvild~~l~~~~g~~~~~~ir~~----------- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR-EQPDLVLLDIMLPGKDGMTICRDLRPK----------- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 79999999999999999999999999999999999998864 679999999999999999999999851
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+........+++++|++||+.||++..+|..++...+.
T Consensus 71 ------------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 71 ------------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 14699999999999999999999999999999999999999987654
No 73
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.49 E-value=4.8e-13 Score=147.40 Aligned_cols=115 Identities=23% Similarity=0.389 Sum_probs=103.6
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||.++|+++++.||..
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~l~~~~g~~l~~~i~~~----------- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS-ETVDVVVVDLNLGREDGLEIVRSLATK----------- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 79999999999999999999999999999999999988763 679999999999999999999999842
Q ss_pred CcccccccCCCCCcccEEEEecc-CCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTAD-VIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~-~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+. .......+++++|+++|+.||++.++|..+++..+.
T Consensus 71 ------------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 71 ------------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred ------------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 25799999995 466778899999999999999999999999887654
No 74
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.48 E-value=5.6e-13 Score=143.20 Aligned_cols=116 Identities=26% Similarity=0.442 Sum_probs=106.1
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||||||++..+..+...|...|+.+..+.++.++++.+.. ..||+|++|+.||+++|+++++.||...
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~d~illd~~~~~~~g~~~~~~l~~~~---------- 70 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES-GHYSLVVLDLGLPDEDGLHLLRRWRQKK---------- 70 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-CCCCEEEEECCCCCCCHHHHHHHHHhcC----------
Confidence 69999999999999999999999999999999999998764 6799999999999999999999998532
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|++||+.||++.++|...+...+.
T Consensus 71 ------------~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 71 ------------YTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred ------------CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999999887654
No 75
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.48 E-value=6.5e-13 Score=144.41 Aligned_cols=119 Identities=23% Similarity=0.341 Sum_probs=107.5
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
++||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+||+|+.||.+||+++++.||+...
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~l~~~~~-------- 73 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLDWMLPGGSGIQFIKHLKRESM-------- 73 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHHhccc--------
Confidence 479999999999999999999999999999999999998764 67999999999999999999999986321
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..++|||++|+..+.+...+++++|++||+.||++.++|..++..++.
T Consensus 74 ------------~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 74 ------------TRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred ------------cCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 235799999999999999999999999999999999999999987754
No 76
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.47 E-value=7.5e-13 Score=143.64 Aligned_cols=114 Identities=26% Similarity=0.458 Sum_probs=104.5
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||||||++..+..+...|+..|+.+..+.++.+|++.+. ..||+||+|+.||++||+++++.||+..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~d~vl~d~~~~~~~g~~~~~~l~~~~---------- 70 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKKNGIDTLKELRQTH---------- 70 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--cCCCEEEEeCCCCCCcHHHHHHHHHhcC----------
Confidence 7999999999999999999999999999999999999775 3699999999999999999999998521
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.+|||++|+.........++++|+++|+.||++.++|..++.+.+.
T Consensus 71 -------------~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 71 -------------QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred -------------CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 2799999999999999999999999999999999999999988654
No 77
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.47 E-value=7.6e-13 Score=142.38 Aligned_cols=119 Identities=24% Similarity=0.402 Sum_probs=107.4
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++..+..+...|+..|+.+..+.++.+++..+.. +.||+|++|+.||+++|+++++.||....
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~g~~~~~~l~~~~~-------- 73 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-RGPDLILLDWMLPGTSGIELCRRLRRRPE-------- 73 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh-cCCCEEEEECCCCCCcHHHHHHHHHcccc--------
Confidence 479999999999999999999999999999999999998864 67999999999999999999999986321
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
...+|||++|+....+...+++++|+++|+.||++.++|..++.+.+.
T Consensus 74 ------------~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 74 ------------TRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred ------------CCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 135799999999999999999999999999999999999999987754
No 78
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.47 E-value=5.9e-13 Score=147.25 Aligned_cols=115 Identities=16% Similarity=0.286 Sum_probs=101.5
Q ss_pred EEEEEecChhHHHHHHHHHhhC-CCEE-EEECCHHHHHHHhCC-CCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKH-GAIV-TCVDCGRAAVDKLTP-PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~-G~~V-~~a~~G~eAl~~l~~-~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
+||||||++..+..+..+|... |+.+ ..+.++.+|++.+.. ...||+||+|+.||+|||+++++.||+..
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~------- 75 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG------- 75 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhC-------
Confidence 7999999999999999999864 6764 578899999987742 35699999999999999999999998632
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
.++|||++|+....+...+++++|+++|+.||++.++|..+|.++
T Consensus 76 ---------------~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 76 ---------------CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred ---------------CCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 257999999999999999999999999999999999999999864
No 79
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.46 E-value=9.2e-13 Score=142.82 Aligned_cols=117 Identities=26% Similarity=0.360 Sum_probs=105.9
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE--MDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~--MDG~eatr~IR~~e~~~~~~i 1159 (1223)
++||||||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||+ ++|+++++.||...
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~~~g~~~~~~i~~~~------- 72 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ-RLPDLAIIDIGLGEEIDGGFMLCQDLRSLS------- 72 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh-CCCCEEEEECCCCCCCCCHHHHHHHHHhcC-------
Confidence 479999999999999999999999999999999999998764 67999999999998 58999999998532
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|++||+.||++.++|..++...+.
T Consensus 73 ---------------~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 73 ---------------ATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred ---------------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999887664
No 80
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.46 E-value=8e-13 Score=147.93 Aligned_cols=119 Identities=21% Similarity=0.292 Sum_probs=104.4
Q ss_pred cEEEEEecChhHHHHHHHHHhhC-CCEE-EEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKH-GAIV-TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~-G~~V-~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+|||||||+..+..+...|... ++.+ ..+.+|.+|++.+.. ..||+|++|+.||+|||+++++.||....
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~-~~~DlvllD~~mp~~dG~~~l~~i~~~~~------ 75 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE-QQPDVVVLDIIMPHLDGIGVLEKLNEIEL------ 75 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhcc------
Confidence 47999999999999999999864 4554 478999999998874 67999999999999999999999996421
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
...+|||++|+........+++++|+++|+.||++.++|...+.+++.
T Consensus 76 --------------~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~ 123 (262)
T TIGR02875 76 --------------SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAW 123 (262)
T ss_pred --------------ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 124799999999999999999999999999999999999999988753
No 81
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.46 E-value=1.1e-12 Score=140.75 Aligned_cols=116 Identities=28% Similarity=0.424 Sum_probs=105.9
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||||||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||+++|+++++.||+..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~i~~~~---------- 70 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-APYDAVILDLTLPGMDGRDILREWREKG---------- 70 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhcC----------
Confidence 69999999999999999999999999999999999998764 6799999999999999999999998632
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|++||+.||++.++|..++...+.
T Consensus 71 ------------~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 71 ------------QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred ------------CCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999998887653
No 82
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.44 E-value=1.7e-12 Score=140.07 Aligned_cols=115 Identities=23% Similarity=0.426 Sum_probs=105.7
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+. ...||+|++|+.||+++|+++++.||..
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~----------- 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-KDDYALIILDIMLPGMDGWQILQTLRTA----------- 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHcC-----------
Confidence 6999999999999999999999999999999999999876 4679999999999999999999999852
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+...+++++|++||+.||++.++|..++...+.
T Consensus 70 ------------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 70 ------------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 14799999999999999999999999999999999999999987654
No 83
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.44 E-value=1.7e-13 Score=149.32 Aligned_cols=114 Identities=29% Similarity=0.459 Sum_probs=101.0
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+|+||||+...-..+..+|++.|..+..++...+|++.+. .+.+|+||.|+.||.|+|+|+++++|.+++
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le-~~kpDLifldI~mp~~ngiefaeQvr~i~~--------- 71 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE-VFKPDLIFLDIVMPYMNGIEFAEQVRDIES--------- 71 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH-hcCCCEEEEEeecCCccHHHHHHHHHHhhc---------
Confidence 6999999999999999999999999999999999999987 478999999999999999999999998764
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.+|||.+|++..-.+ ..+....+|||.|||+++.|..+|.|..+
T Consensus 72 -------------~v~iifIssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 72 -------------AVPIIFISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred -------------cCcEEEEecchhhhh--hhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 479999999865433 34444459999999999999999998764
No 84
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.43 E-value=2.6e-12 Score=121.54 Aligned_cols=110 Identities=52% Similarity=0.885 Sum_probs=94.0
Q ss_pred eCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccc
Q 000920 733 GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812 (1223)
Q Consensus 733 gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~ 812 (1223)
+|+..|.+++.|++.||+++...++.|.|.+...+.
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~-------------------------------------------- 36 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGD-------------------------------------------- 36 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC--------------------------------------------
Confidence 588999999999999999999766777776653221
Q ss_pred cccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCC
Q 000920 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892 (1223)
Q Consensus 813 ~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g 892 (1223)
.+.|.|.|+|.|++++...++|.+++.... .....++.|+||++|+.+++.|+|++.+.+.++
T Consensus 37 ----------------~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~ 99 (111)
T smart00387 37 ----------------HLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPG 99 (111)
T ss_pred ----------------EEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCC
Confidence 478999999999999999999999986553 233456899999999999999999999999989
Q ss_pred CeEEEEEEEEe
Q 000920 893 TGSTFSFTVTF 903 (1223)
Q Consensus 893 ~GStF~f~Lpl 903 (1223)
.|++|+|.+|+
T Consensus 100 ~g~~~~~~~~~ 110 (111)
T smart00387 100 GGTTFTITLPL 110 (111)
T ss_pred CcEEEEEEeeC
Confidence 99999999986
No 85
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.42 E-value=2.6e-12 Score=137.70 Aligned_cols=115 Identities=28% Similarity=0.457 Sum_probs=105.3
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCC
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~ 1163 (1223)
||++||++..+..+...|...|+.+..+.++.+|++.+.. +.||+|++|+.||.++|+++++.||...
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~~~----------- 68 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK-DDYDLIILDVMLPGMDGWQILQTLRRSG----------- 68 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHccC-----------
Confidence 5899999999999999999999999999999999998864 6799999999999999999999998532
Q ss_pred cccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1164 ~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|+++|+.||++.++|...+.+.+.
T Consensus 69 -----------~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 69 -----------KQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred -----------CCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 25799999999999999999999999999999999999999987654
No 86
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.42 E-value=3.1e-12 Score=138.06 Aligned_cols=117 Identities=26% Similarity=0.418 Sum_probs=106.2
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++..+..+...|...|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++.||+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~~--------- 73 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR-QQPPDLVILDVGLPDISGFELCRQLLAFH--------- 73 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhhC---------
Confidence 47999999999999999999999999999999999998876 46799999999999999999999999632
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+.........++++|+++|+.||++.++|..++...+.
T Consensus 74 -------------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 74 -------------PALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILR 120 (228)
T ss_pred -------------CCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHC
Confidence 25799999999999999999999999999999999999999887654
No 87
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.40 E-value=4.6e-12 Score=138.23 Aligned_cols=117 Identities=30% Similarity=0.430 Sum_probs=106.3
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
..+||+|||++..+..+...|...|+.+..+.++.+++..+.. ..||+|++|+.||+++|+++++.||..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~-~~~d~illd~~~~~~~g~~~~~~l~~~--------- 75 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK-EQPDLVILDVMMPKLDGYGVCQEIRKE--------- 75 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 3589999999999999999999999999999999999988763 679999999999999999999999852
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|+++|+.||++.++|..++...+.
T Consensus 76 --------------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 76 --------------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred --------------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999999887653
No 88
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.40 E-value=4.9e-12 Score=134.67 Aligned_cols=116 Identities=18% Similarity=0.286 Sum_probs=105.5
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
+||+|||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.||+++|+++++.+|...
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~~--------- 71 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-LKPDIVIIDVDIPGVNGIQVLETLRKRQ--------- 71 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc-cCCCEEEEeCCCCCCCHHHHHHHHHhhC---------
Confidence 699999999999999999999999987 69999999998864 6799999999999999999999998632
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
...|||++|+.........++++|+++|+.||++.++|..++...+.
T Consensus 72 -------------~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 72 -------------YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred -------------CCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 24689999999999999999999999999999999999999988764
No 89
>PRK14084 two-component response regulator; Provisional
Probab=99.39 E-value=3.6e-12 Score=141.01 Aligned_cols=114 Identities=21% Similarity=0.332 Sum_probs=99.1
Q ss_pred EEEEEecChhHHHHHHHHHhhCC-C-EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHG-A-IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G-~-~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+||||||++..+..+..+|+..+ + .+..+.++++|++.+.. +.||+||+|+.||+|||+++++.||+..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~-~~~dlv~lDi~m~~~~G~~~~~~i~~~~-------- 72 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI-NQYDIIFLDINLMDESGIELAAKIQKMK-------- 72 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 69999999999999999999876 3 57789999999998864 6799999999999999999999999642
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.+.|||++|+... ...++++.|+++|+.||++.++|..++.++..
T Consensus 73 --------------~~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 73 --------------EPPAIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred --------------CCCEEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2457999998753 56789999999999999999999999988753
No 90
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.39 E-value=4e-12 Score=154.47 Aligned_cols=117 Identities=29% Similarity=0.398 Sum_probs=107.8
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++..+..+..+|...|+.+..+.++.+|+..+.. ..||+||+|+.||+|||+++++.||+..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~-~~~DlvllD~~lp~~dgl~~l~~ir~~~--------- 73 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-KTPDVLLSDIRMPGMDGLALLKQIKQRH--------- 73 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEECCCCCCCCHHHHHHHHHhhC---------
Confidence 479999999999999999999999999999999999998864 6799999999999999999999998632
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+....++++|+++|+.||++.++|...+.+.+.
T Consensus 74 -------------~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 74 -------------PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred -------------CCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999987764
No 91
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.39 E-value=5.4e-12 Score=137.17 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=103.9
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCC--EEEEECCHHHHHHHhCCCCCccEEEEeCCCCC---CCHHHHHHHHHhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGA--IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE---MDGFQATWQIRHLENEIN 1156 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~--~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~---MDG~eatr~IR~~e~~~~ 1156 (1223)
.+||||||++..+..+..+|+..++ .+..+.++.++++.+.. ..||+||+|+.||+ ++|++++++||...
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~---- 78 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-LDAHVLITDLSMPGDKYGDGITLIKYIKRHF---- 78 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHC----
Confidence 5799999999999999999988765 37778999999998764 57999999999999 59999999998632
Q ss_pred hhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1157 ~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|+++|+.||++.++|..+|.....
T Consensus 79 ------------------~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 79 ------------------PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred ------------------CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 25799999999999999999999999999999999999999987654
No 92
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.38 E-value=4.6e-12 Score=153.31 Aligned_cols=118 Identities=34% Similarity=0.530 Sum_probs=107.9
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
..+||||||++..+..+...|...|+.+.++.++.+|+..+.. ..||+||+|+.||+|||+++++.||+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlillD~~~p~~~g~~ll~~i~~~~-------- 74 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD-IHPDVVLMDIRMPEMDGIKALKEMRSHE-------- 74 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 4589999999999999999999999999999999999998864 6799999999999999999999998632
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+...+++++|++||+.||++.++|...+.+.+.
T Consensus 75 --------------~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 75 --------------TRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred --------------CCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 25799999999999999999999999999999999999999887653
No 93
>PRK15115 response regulator GlrR; Provisional
Probab=99.38 E-value=3.6e-12 Score=153.73 Aligned_cols=117 Identities=25% Similarity=0.383 Sum_probs=107.6
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++.++..+...|+..|+.+..+.++.+|++.+.. ..||+||+|+.||+|||+++++.|+...
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~-~~~dlvilD~~lp~~~g~~ll~~l~~~~--------- 75 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR-EKVDLVISDLRMDEMDGMQLFAEIQKVQ--------- 75 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHhcC---------
Confidence 589999999999999999999999999999999999998864 6799999999999999999999998532
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+...+++++|++||+.||++.++|...|.+.+.
T Consensus 76 -------------~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 76 -------------PGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred -------------CCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999988754
No 94
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.36 E-value=4.9e-12 Score=152.68 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=102.8
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCC-----CCHHHHHHHHHhhhhhhhhh
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE-----MDGFQATWQIRHLENEINEQ 1158 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~-----MDG~eatr~IR~~e~~~~~~ 1158 (1223)
||||||++.++..+...| .||.+..+.++.+|++.+.. ..||+||+|+.||+ |||++++++|++..
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~-~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~------ 71 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR-HEPAVVTLDLGLPPDADGASEGLAALQQILAIA------ 71 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhC------
Confidence 699999999999999988 79999999999999999874 67999999999996 99999999998632
Q ss_pred hhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1159 i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+..+.+...+++++|++||+.||++.++|..+|.+.+.
T Consensus 72 ----------------~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 72 ----------------PDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred ----------------CCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 35799999999999999999999999999999999999998877653
No 95
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.36 E-value=1.1e-11 Score=131.01 Aligned_cols=113 Identities=21% Similarity=0.354 Sum_probs=101.1
Q ss_pred EEEEEecChhHHHHHHHHHhhC-CCE-EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKH-GAI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~-G~~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+||||||++..+..+...|+.. |+. +..+.++.++++.+. ...||+||+|+.||++||+++++.++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~---------- 71 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP-GRGVQVCICDISMPDISGLELLSQLPK---------- 71 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHcc----------
Confidence 7999999999999999999854 565 568899999999886 467999999999999999999988762
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.+|||++|+....+....++++|+++|+.||++.++|..++.+.+.
T Consensus 72 ---------------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 72 ---------------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred ---------------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999999999988764
No 96
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.36 E-value=4.7e-12 Score=152.45 Aligned_cols=117 Identities=29% Similarity=0.479 Sum_probs=107.4
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+.. ..||+||+|+.||+|||+++++.||+..
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~DlvilD~~m~~~~G~~~~~~ir~~~--------- 75 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMDGIATLKEIKALN--------- 75 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhhC---------
Confidence 589999999999999999999999999999999999998864 6799999999999999999999999632
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|++...+....++++|+++|+.||++.++|...+.+.+.
T Consensus 76 -------------~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 76 -------------PAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred -------------CCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999887653
No 97
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.35 E-value=8.5e-12 Score=145.42 Aligned_cols=114 Identities=27% Similarity=0.326 Sum_probs=97.7
Q ss_pred EEEEEecChhHHHHHHHHH-hhCCCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGAL-KKHGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L-~~~G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+||||||++..+..+..+| +..|+.+. .+.+|.+|++.+.. ..||+|+||+.||+|||++++++|+..
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~-~~pDlVllD~~mp~~~G~e~l~~l~~~--------- 71 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA-QPPDVILMDLEMPRMDGVEATRRIMAE--------- 71 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc-cCCCEEEEcCCCCCCCHHHHHHHHHHH---------
Confidence 7999999999999999999 46688876 78999999998874 679999999999999999999999852
Q ss_pred cCCcccccccCCCCCcccEEEEeccCC--HHhHHHHHHcCCCEEEECCC---------CHHHHHHHHHHHh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVI--QASNEQCMKCGMDDYVSKPF---------EDEQLYTAVARFF 1220 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~--~~~~~~~l~aG~ddyl~KP~---------~~~~L~~~v~r~l 1220 (1223)
.++|||++|+... .+...+++++|+++|+.||+ ..++|...|++..
T Consensus 72 --------------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 72 --------------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred --------------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 1479999998754 55677899999999999999 5677777776653
No 98
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.35 E-value=1.6e-11 Score=130.79 Aligned_cols=117 Identities=21% Similarity=0.348 Sum_probs=104.0
Q ss_pred cEEEEEecChhHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKH-GAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~-G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||||||++..+..+...|+.. ++.+. .+.++.++++.+. ...||+|++|+.||+++|+++++.||...
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~~------- 75 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR-TRPVDLIIMDIDLPGTDGFTFLKRIKQIQ------- 75 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHhC-------
Confidence 47999999999999999999877 57775 6889999998876 46799999999999999999999998532
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+....++++|+++|+.||++.++|..+|...+.
T Consensus 76 ---------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 76 ---------------STVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred ---------------CCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHc
Confidence 24799999999999999999999999999999999999999987754
No 99
>PRK09483 response regulator; Provisional
Probab=99.35 E-value=1.5e-11 Score=132.26 Aligned_cols=116 Identities=26% Similarity=0.384 Sum_probs=104.6
Q ss_pred EEEEEecChhHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKH-GAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~-G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+||||||++..+..+..+|+.. |+.+. .+.++.++++.+.. ..||+|++|+.||+++|+++++.|++..
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~~-------- 73 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT-NAVDVVLMDMNMPGIGGLEATRKILRYT-------- 73 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHHC--------
Confidence 7999999999999999999874 88876 68999999988864 6799999999999999999999998632
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|..........++..|+++|+.||++.++|..++.+++.
T Consensus 74 --------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 74 --------------PDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred --------------CCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 25799999999999999999999999999999999999999988765
No 100
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.34 E-value=1e-11 Score=136.38 Aligned_cols=114 Identities=23% Similarity=0.285 Sum_probs=96.8
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCC-E-EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGA-I-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~-~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+|||+||++..+..+..+|+..|. . +..+.++.+|++.+.. ..||+||+|+.||+|||+++++.++..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~dlv~lDi~~~~~~G~~~~~~l~~~-------- 72 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR-LKPDVVFLDIQMPRISGLELVGMLDPE-------- 72 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHhccc--------
Confidence 3799999999999999999998883 3 4568899999988764 579999999999999999999888621
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
...+||++|+.. +...++++.|+++||.||++.++|..++.++..
T Consensus 73 ---------------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 73 ---------------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred ---------------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 124688899875 466789999999999999999999999988753
No 101
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.34 E-value=8e-12 Score=151.53 Aligned_cols=115 Identities=28% Similarity=0.362 Sum_probs=105.8
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCC
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~ 1163 (1223)
||||||++..+..+...|+..|+.+..+.++.+|+..+.. ..||+||+|+.||+|||+++++.||+..
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~DlVllD~~~p~~~g~~ll~~l~~~~----------- 68 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR-GQPDLLITDVRMPGEDGLDLLPQIKKRH----------- 68 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHHhC-----------
Confidence 6899999999999999999999999999999999998864 6799999999999999999999998632
Q ss_pred cccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1164 ~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+...+++++|++||+.||++.++|...+.+.+.
T Consensus 69 -----------~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 69 -----------PQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred -----------CCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999988654
No 102
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.34 E-value=4.3e-12 Score=162.03 Aligned_cols=395 Identities=23% Similarity=0.248 Sum_probs=277.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000920 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQM-LMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEP 690 (1223)
Q Consensus 612 k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lel-L~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l 690 (1223)
+.++..+..+...++..++|..|+|++++++.+.. +.+..+...+.-.+++..++...+..+++.-.|.++...|....
T Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~ 455 (786)
T KOG0519|consen 376 KEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLG 455 (786)
T ss_pred hhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCccc
Confidence 44445555666778888889999999999999874 44445556666667777888888999999999999988888788
Q ss_pred ceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHh--ccCCCCeEEEEEEEccC
Q 000920 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIK--FTQDKGHIFVSVHLADD 768 (1223)
Q Consensus 691 ~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIK--fT~~~G~I~V~v~~~~~ 768 (1223)
+...+.+..++.............+...+.+.+....|..+.+|..++.|++.+..+++.+ ++..+......+.....
T Consensus 456 ~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 535 (786)
T KOG0519|consen 456 ESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAELL 535 (786)
T ss_pred chhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEeccc
Confidence 8889999999999999988888788888888888888888899999999999999999999 88665543344433211
Q ss_pred ccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhh
Q 000920 769 VRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848 (1223)
Q Consensus 769 ~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~r 848 (1223)
.. ..+.. . .-.+.-|.... ......+.+.+++++.|+....++.
T Consensus 536 ~~-~vd~~---------------------~-----~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~s~ 579 (786)
T KOG0519|consen 536 GI-SVDVS---------------------L-----SLSLAFWFLDL---------SLSDLEVCKQIEDNEEGSNNGDISS 579 (786)
T ss_pred Cc-ccccc---------------------c-----cchhhhhhccc---------ccccchheEEeeeccccccCCCcch
Confidence 00 00000 0 00001111000 0011256789999999999988888
Q ss_pred hcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEE-eCCCe----EEEEEEEEecc---CCcCCCCCCcccccC
Q 000920 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS-EPGTG----STFSFTVTFTE---GERNSLDPKWQQYVP 920 (1223)
Q Consensus 849 LFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S-~~g~G----StF~f~Lpl~~---~~~~~~~~~~~~~~~ 920 (1223)
.+..|.+....+++...+.+++++.|.+..+.++|.+++.- ..+.. +.+.+..-... ....+.+++......
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 659 (786)
T KOG0519|consen 580 SNPLHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPR 659 (786)
T ss_pred hhhhhhccccchhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCCcccccCcc
Confidence 88888877766666557889999999999999999998852 11110 01111110000 001111111112222
Q ss_pred CcccccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHH
Q 000920 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYM 1000 (1223)
Q Consensus 921 ~~~~~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~ 1000 (1223)
....++|.++|+|||+.++..+...+|+.+|..+..++|+.+|+..+.. ...++++++|.+++.-+.-. .
T Consensus 660 ~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~------~~~y~~ifmD~qMP~mDG~e----~ 729 (786)
T KOG0519|consen 660 DSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP------PHSYDVIFMDLQMPEMDGYE----A 729 (786)
T ss_pred ccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC------CCcccEEEEEcCCcccchHH----H
Confidence 4455789999999999999999999999999999999999999998873 35689999999887654321 2
Q ss_pred HHHHHhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1001 LKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1001 ~~~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.+++|.... ..+|.+.+. .+..+....+....|...|+.||+....|..+++
T Consensus 730 ~~~irk~~~----~~~pIvAlT-a~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~ 781 (786)
T KOG0519|consen 730 TREIRKKER----WHLPIVALT-ADADPSTEEECLEVGMDGYLSKPFTLEKLVKILR 781 (786)
T ss_pred HHHHHHhhc----CCCCEEEEe-cCCcHHHHHHHHHhCCceEEcccccHHHHHHHHH
Confidence 233333322 245555444 4567777888889999999999998777766554
No 103
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.33 E-value=8.6e-12 Score=124.41 Aligned_cols=114 Identities=22% Similarity=0.319 Sum_probs=105.3
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
+..|+|||+......+...+++.||.|..|.+.+||+..++. ..|...+.|+.|-+-+|+++++.||+..
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art-~~PayAvvDlkL~~gsGL~~i~~lr~~~--------- 79 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART-APPAYAVVDLKLGDGSGLAVIEALRERR--------- 79 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc-CCCceEEEEeeecCCCchHHHHHHHhcC---------
Confidence 368999999999999999999999999999999999999874 6799999999999999999999999743
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1218 (1223)
.+..||++|++....+..++.+.|+++|+.||-+.+++..++.+
T Consensus 80 -------------~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 80 -------------ADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred -------------CcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 25689999999999999999999999999999999999988765
No 104
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.33 E-value=2.5e-11 Score=132.47 Aligned_cols=116 Identities=22% Similarity=0.382 Sum_probs=105.7
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||+|||++..+..+...|+..|+.+..+.++.+|+..+. ...||+|++|+.||.++|+++++.||..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 79 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR-QTPPDLILLDLMLPGTDGLTLCREIRRF---------- 79 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 38999999999999999999999999999999999999886 4679999999999999999999999841
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+.........++++|++||+.||++.++|...+...+.
T Consensus 80 -------------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 80 -------------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred -------------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 24799999999999999999999999999999999999998887654
No 105
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.30 E-value=4.3e-11 Score=128.54 Aligned_cols=116 Identities=31% Similarity=0.470 Sum_probs=105.3
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||++||++..+..+...|...|+.+.++.++.++++.+.. ..||+|++|+.||+++|+++++.||...
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~d~vild~~~~~~~~~~~~~~i~~~~---------- 70 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS-EMYALAVLDINMPGMDGLEVLQRLRKRG---------- 70 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCcHHHHHHHHHhcC----------
Confidence 69999999999999999999999999999999999987763 6799999999999999999999998532
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+...+++++|+++|+.||++.++|...+...+.
T Consensus 71 ------------~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 71 ------------QTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999999887654
No 106
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.28 E-value=5.9e-11 Score=142.04 Aligned_cols=112 Identities=26% Similarity=0.438 Sum_probs=87.7
Q ss_pred EEeCHHHHHHHHHHHHHHHHhccCCCC---eEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCcccccc
Q 000920 731 VIGDPGRFRQIITNLVGNSIKFTQDKG---HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRW 807 (1223)
Q Consensus 731 v~gD~~rL~QIL~NLLsNAIKfT~~~G---~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~ 807 (1223)
+.+|...|.|++.||++||++|+...| .|.|.+...+
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g---------------------------------------- 61 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIG---------------------------------------- 61 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC----------------------------------------
Confidence 446899999999999999999996555 4655553211
Q ss_pred ccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC--CCCCCCcccHHHHHHHHHHHcCCE-
Q 000920 808 KSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST--SRTYGGTGIGLSISRCLVELMGGE- 884 (1223)
Q Consensus 808 ~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st--sr~~gGTGLGLsI~k~LVelmgG~- 884 (1223)
...+.|+|+|+|+||+++.++++|++|+..+... ....||.|+||++++.++++|+|.
T Consensus 62 -------------------~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~ 122 (488)
T TIGR01052 62 -------------------KDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKP 122 (488)
T ss_pred -------------------CceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCce
Confidence 0136799999999999999999999998765432 234579999999999999999998
Q ss_pred EEEEEeCCCeEEEEEEEE
Q 000920 885 IGFVSEPGTGSTFSFTVT 902 (1223)
Q Consensus 885 I~v~S~~g~GStF~f~Lp 902 (1223)
+.+.|..+ |+.|...+.
T Consensus 123 i~V~S~~~-g~~~~~~~~ 139 (488)
T TIGR01052 123 VKVISSTG-GEIYVYKMK 139 (488)
T ss_pred EEEEEecC-CceEEEEEE
Confidence 99999886 666633333
No 107
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.27 E-value=4.5e-11 Score=125.50 Aligned_cols=117 Identities=28% Similarity=0.407 Sum_probs=105.8
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++..+..+...|...|+.+..+.++.++++.+.. ..||+|++|+.||.++|+++++.||...
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~d~ii~d~~~~~~~~~~~~~~l~~~~--------- 73 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG-LRFGCVVTDVRMPGIDGIELLRRLKARG--------- 73 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc-CCCCEEEEeCCCCCCcHHHHHHHHHhcC---------
Confidence 579999999999999999999999999999999999988764 6799999999999999999999998532
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|+++|+.||++.++|...+...+.
T Consensus 74 -------------~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 74 -------------SPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999888876554
No 108
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.26 E-value=7.1e-11 Score=141.41 Aligned_cols=117 Identities=27% Similarity=0.413 Sum_probs=106.6
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||+|||++..+..+...|...|+.+..+.++.+|+..+.. ..||+|++|+.||+++|+++++.||+...
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~l~~~i~~~~~--------- 73 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER-EQPDIILLDVMMPGMDGFEVCRRLKSDPA--------- 73 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh-cCCCEEEEeCCCCCCCHHHHHHHHHcCcc---------
Confidence 79999999999999999999999999999999999998864 67999999999999999999999986321
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
...+|||++|+....+...+++++|+++|+.||++.++|..++.+.+
T Consensus 74 -----------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~ 120 (457)
T PRK09581 74 -----------TTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLT 120 (457)
T ss_pred -----------cCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 23589999999999999999999999999999999999999888764
No 109
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.25 E-value=5.9e-11 Score=145.70 Aligned_cols=131 Identities=19% Similarity=0.280 Sum_probs=90.5
Q ss_pred HhcCcEEEEEecCCCCce-EEeCHHHHHHHHHHHHHHHHhccCCCC---eEEEEEEEccCccccccchhhhhhhhccccc
Q 000920 713 NQKGIELAIYVSDRVPEV-VIGDPGRFRQIITNLVGNSIKFTQDKG---HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788 (1223)
Q Consensus 713 ~~k~I~l~v~v~~~~p~~-v~gD~~rL~QIL~NLLsNAIKfT~~~G---~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~ 788 (1223)
..+.+.+...+..+.+.. +-.|...|.+++.|||+||++|+..+| .|.|.+...+
T Consensus 21 ~~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g--------------------- 79 (795)
T PRK14868 21 SQREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVG--------------------- 79 (795)
T ss_pred hccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEECC---------------------
Confidence 457788877776554321 223577899999999999999997655 4666553211
Q ss_pred ccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC----CCCCCC
Q 000920 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS----STSRTY 864 (1223)
Q Consensus 789 ~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~----stsr~~ 864 (1223)
..+.|.|+|+|+||++++++++|+||++.+. ..++..
T Consensus 80 ---------------------------------------~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~ 120 (795)
T PRK14868 80 ---------------------------------------DYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQ 120 (795)
T ss_pred ---------------------------------------CEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCC
Confidence 1478999999999999999999999986542 123344
Q ss_pred CCcccHHHHHHHHHHHcCCEEEEEEeCCC-eEEEEEEEEec
Q 000920 865 GGTGIGLSISRCLVELMGGEIGFVSEPGT-GSTFSFTVTFT 904 (1223)
Q Consensus 865 gGTGLGLsI~k~LVelmgG~I~v~S~~g~-GStF~f~Lpl~ 904 (1223)
.|.||||+++...+ .+||.|.+.|..+. +..+.+.|.+.
T Consensus 121 rG~GLglai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~Id 160 (795)
T PRK14868 121 QGIGISAAVLYSQL-TSGKPAKITSRTQGSEEAQYFELIID 160 (795)
T ss_pred CceehHHHHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEEe
Confidence 56666666666666 36888999998754 33333444443
No 110
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.25 E-value=7e-11 Score=138.64 Aligned_cols=104 Identities=29% Similarity=0.411 Sum_probs=90.5
Q ss_pred cEEEEEecChhHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKH-GAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~-G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||||||++.++..+..+|... |+.+. .+.++.+|++.+.. ..||+|++|+.||+|||++++++||+..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~-~~~DlVllD~~mp~~dgle~l~~i~~~~------- 75 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK-LNPDVITLDVEMPVMDGLDALEKIMRLR------- 75 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh-hCCCEEEEeCCCCCCChHHHHHHHHHhC-------
Confidence 48999999999999999999876 88877 88999999998764 6799999999999999999999998531
Q ss_pred hcCCcccccccCCCCCcccEEEEeccC--CHHhHHHHHHcCCCEEEECCCCH
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADV--IQASNEQCMKCGMDDYVSKPFED 1209 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~--~~~~~~~~l~aG~ddyl~KP~~~ 1209 (1223)
.+|||++|+.. ..+...+++++|++||+.||++.
T Consensus 76 ----------------~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~ 111 (354)
T PRK00742 76 ----------------PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFLG 111 (354)
T ss_pred ----------------CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCccc
Confidence 27999999864 34667789999999999999953
No 111
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.25 E-value=3.5e-11 Score=106.91 Aligned_cols=66 Identities=41% Similarity=0.734 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMD-TELDAAQ-LDYAQTAHNSGKDLISLINDVLDQAKIESG 686 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~-~~l~~~q-~~~l~~i~~s~~~Ll~LIndlLD~sKiesg 686 (1223)
+|++|++++||||||||++|.++++++.. ...++++ ++++..+..+++++..+|+++++++|+++|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47899999999999999999999999999 8888888 899999999999999999999999999987
No 112
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.21 E-value=1.4e-10 Score=126.93 Aligned_cols=114 Identities=10% Similarity=0.081 Sum_probs=93.0
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHH-HHHHhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT-WQIRHLENEINEQI 1159 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eat-r~IR~~e~~~~~~i 1159 (1223)
..++++|||++..+..++.+|+..--.+..+.++.+|++.+. .||+||||+.||++||++++ +.||...
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~~~~i~~~~------- 79 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRKN------- 79 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHHHHHHHHhC-------
Confidence 347999999999999999999844334567789999998643 39999999999999999997 5677532
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHH--cCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK--CGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~--aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+.... ...++. +|+++|+.|+.+.++|.++|+..+.
T Consensus 80 ---------------p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 80 ---------------NNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred ---------------CCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 25799999998663 334455 5999999999999999999987764
No 113
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.21 E-value=2.7e-09 Score=115.62 Aligned_cols=177 Identities=16% Similarity=0.219 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHH
Q 000920 272 FVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQ----FNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGE 347 (1223)
Q Consensus 272 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~d~~a~~lq~~----~~~~~~~~~aL~~l~~~~~~~~~~~~vd~~~F~~ 347 (1223)
-.++|++++++...+.|.....--++.+.+...+.+..++.| +|.++..|..|+... +..|++.|+.|+.
T Consensus 20 Pali~~~i~vv~sv~~~~~~~~~~qe~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~~~------e~~P~~~Q~qw~~ 93 (297)
T COG3452 20 PALIGAVILVVVSVHAWLQLRRVSQERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGKHW------ETEPDMPQQQWEL 93 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhe------ecCCCchHHHhHH
Confidence 334555555555555555544444455555555555555554 555555555555555 3467799999999
Q ss_pred HHHHhhhcCCCccceeeccccCchhHHHHHHHhccceeeeccccccccccCCCCCCCCCCCCCccceeeeccccccceee
Q 000920 348 YTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVS 427 (1223)
Q Consensus 348 ~t~~~~~~~p~i~gv~~~~~V~~~eR~~fE~~~~~~i~~~~~~~~~i~~~~~~~~~~p~~~r~~Y~Pvi~~~~~~~~~~g 427 (1223)
-+......+.+.+.++=+| +|++ --.|+-|.+..++|
T Consensus 94 lA~a~~e~~~~lr~I~vaP--------------~~VV-----------------------------~~~yPl~~neaa~g 130 (297)
T COG3452 94 LARAVFEDYDGLRNIAVAP--------------SLVV-----------------------------ARVYPLPGNEAAIG 130 (297)
T ss_pred HHHHHhhccccceeeccCc--------------ccEE-----------------------------EEEeecCCChhhcC
Confidence 9888777777776666331 1122 12466677888899
Q ss_pred eccCCChhhHHHHHHHHHcCCcccccceeecccCCceEEEEEEeeccCCCCCCCHHHHHHhhheEEEEeeehHHHHHHH
Q 000920 428 IDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKL 506 (1223)
Q Consensus 428 ~Dm~s~~~rr~ai~~Ar~tg~~~lt~p~~L~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~a~~G~v~~~~~v~~l~~~~ 506 (1223)
+|+..+|.-+.++.+||+.++.++|+|+.|+| ++.|++..+|+|.. .|.+ ..++|+|.++||++.|.+..
T Consensus 131 LDYrk~pqQ~~s~~~A~~~k~tvvsGpVDL~Q-GgRgfi~rvPlf~g-p~~~-------dRFwGvVs~V~dvDqL~~s~ 200 (297)
T COG3452 131 LDYRKNPQQRQSTSRARRQKETVVSGPVDLVQ-GGRGFIGRVPLFMG-PPGG-------DRFWGVVSGVFDVDQLYESV 200 (297)
T ss_pred cchhcCHHHHHHHHHHHhhcceEEecceeecc-CCceEEEEEeeeeC-CCCC-------CccceEEEEEEEHHHHHHHh
Confidence 99999999999999999999999999999997 55699999999953 2222 23899999999999998876
No 114
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.21 E-value=4.9e-10 Score=107.31 Aligned_cols=120 Identities=30% Similarity=0.428 Sum_probs=105.3
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCC-EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGA-IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~-~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
..+||++||++.....+...|+..|+ .+..+.++.+++..+. ...||++++|..+|.++|+++.+.+++...
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~di~l~d~~~~~~~~~~~~~~l~~~~~------ 77 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGFGFVISDWNMPNMDGLELLKTIRADGA------ 77 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh-ccCCCEEEEcCCCCCCCHHHHHHHHHhCCC------
Confidence 35899999999999999999999998 4888999999998876 467999999999999999999999986321
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..++|+++++..........+++.|+++|+.||++.++|...+.+.+.
T Consensus 78 --------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~ 125 (129)
T PRK10610 78 --------------MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred --------------cCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHH
Confidence 235799999998888889999999999999999999999999988764
No 115
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.20 E-value=1.5e-10 Score=125.84 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=88.6
Q ss_pred HHHHHHHHhh---CCCEEEEECCHHHHHHHhCCCCCccEEE---EeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccc
Q 000920 1094 RRVAEGALKK---HGAIVTCVDCGRAAVDKLTPPHNFDACF---MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAE 1167 (1223)
Q Consensus 1094 ~~vl~~~L~~---~G~~V~~a~~G~eAl~~l~~~~~~DlIl---mDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~ 1167 (1223)
|..+..+|+. .|+.+.++.++.++++.+.. ..||+++ +|+.||+|||++++++||+..
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~-~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~--------------- 66 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR-ISFSAVIFSLSAMRSERREGLSCLTELAIKF--------------- 66 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc-CCCCEEEeeccccCCCCCCHHHHHHHHHHHC---------------
Confidence 5567777865 57778899999999998764 5789998 788999999999999998642
Q ss_pred cccCCCCCcccEEEEeccCCHHhHHHHH-HcCCCEEEECCCCHHHHHHHHHHHhhc
Q 000920 1168 MFGNVGLWHVPILAMTADVIQASNEQCM-KCGMDDYVSKPFEDEQLYTAVARFFMS 1222 (1223)
Q Consensus 1168 ~~~~~~~~~iPIIalTA~~~~~~~~~~l-~aG~ddyl~KP~~~~~L~~~v~r~l~~ 1222 (1223)
+++|||++|+.........++ ++|+++||.||++.++|..+|+..+..
T Consensus 67 -------p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 67 -------PRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred -------CCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 357999999987776666655 799999999999999999999987653
No 116
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.19 E-value=2e-10 Score=106.78 Aligned_cols=71 Identities=55% Similarity=0.827 Sum_probs=59.6
Q ss_pred EEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 000920 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901 (1223)
Q Consensus 829 ~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~L 901 (1223)
.+.|.|.|+|.|+++..+.++|.+|.. .......++.|+||++|+.+++.|||++++.+..+.|++|++.+
T Consensus 33 ~~~v~i~d~g~g~~~~~~~~~~~~~~~--~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 33 HLEIRVEDNGPGIPEEDLERIFERFSD--GSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred EEEEEEEeCCCCCCHHHHHHHhhhhhc--CCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 478999999999999999999998821 12223446899999999999999999999999988899998753
No 117
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.19 E-value=4.3e-10 Score=118.69 Aligned_cols=117 Identities=22% Similarity=0.232 Sum_probs=102.8
Q ss_pred cEEEEEecChhHHHHHHHHHhhC-CCEE-EEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKH-GAIV-TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~-G~~V-~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||+|||++..+..+...|... ++.+ ..+.++.++++.+. ...||+|++|+.||.++|+++++.+|+..
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~~------- 75 (211)
T PRK15369 4 YKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR-QLEPDIVILDLGLPGMNGLDVIPQLHQRW------- 75 (211)
T ss_pred cEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHC-------
Confidence 57999999999999999999876 4664 47889999998775 46799999999999999999999998632
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+.........++.+|+++|+.||++.++|...+.+.+.
T Consensus 76 ---------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 76 ---------------PAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred ---------------CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 25799999999999999999999999999999999999999987654
No 118
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.18 E-value=1.1e-10 Score=133.75 Aligned_cols=103 Identities=28% Similarity=0.474 Sum_probs=91.1
Q ss_pred cEEEEEecChhHHHHHHHHHhhCC--CEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHG--AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G--~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.|||||||....|++++.+|...| ..|-.+.||.+|++++.. ..||+|.||+.||.|||++++++|-+.
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~-~~PDVi~ld~emp~mdgl~~l~~im~~-------- 72 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK-LKPDVITLDVEMPVMDGLEALRKIMRL-------- 72 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh-cCCCEEEEecccccccHHHHHHHHhcC--------
Confidence 389999999999999999999999 678889999999999974 789999999999999999999988742
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCC--HHhHHHHHHcCCCEEEECCCC
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVI--QASNEQCMKCGMDDYVSKPFE 1208 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~--~~~~~~~l~aG~ddyl~KP~~ 1208 (1223)
..+|||++++-.. .+...+|++.|+-||+.||..
T Consensus 73 ---------------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 73 ---------------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred ---------------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 3689999988544 566678999999999999984
No 119
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.18 E-value=4.4e-10 Score=119.85 Aligned_cols=117 Identities=21% Similarity=0.304 Sum_probs=103.2
Q ss_pred cEEEEEecChhHHHHHHHHHhhC-CCEE-EEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKH-GAIV-TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~-G~~V-~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||||||++..+..+...|... ++.+ ..+.++.+++..+.. ..||+|++|+.||+++|+++++.|+...
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~d~~l~~~~~~~~~~~l~~~~------- 78 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-LDPDLILLDLNMPGMNGLETLDKLREKS------- 78 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCcHHHHHHHHHHhC-------
Confidence 58999999999999999999875 5654 468899999998864 6799999999999999999999998632
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|+|++|+....+....++++|+++|+.||++.++|...+.+.+.
T Consensus 79 ---------------~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 79 ---------------LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred ---------------CCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 24699999999999999999999999999999999999999988764
No 120
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.18 E-value=1.4e-10 Score=147.05 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=101.4
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++.++..+..+|...|+.+..+.++.+|+..+. ...||+||+|+.||+|||++++++||...
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~-~~~~Dlvl~d~~lp~~~g~~~l~~l~~~~--------- 77 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE-AGEIDCVVADHEPDGFDGLALLEAVRQTT--------- 77 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh-ccCCCEEEEeccCCCCcHHHHHHHHHhcC---------
Confidence 47999999999999999999999999999999999999886 46799999999999999999999998632
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHH--HHHHHHHHH
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDE--QLYTAVARF 1219 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~--~L~~~v~r~ 1219 (1223)
..+|||++|+..+.+...+++++|++||+.||.+.. .+..++.+.
T Consensus 78 -------------~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~ 124 (665)
T PRK13558 78 -------------AVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESA 124 (665)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHh
Confidence 257999999999999999999999999999998643 555555543
No 121
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.17 E-value=4.8e-10 Score=119.28 Aligned_cols=117 Identities=25% Similarity=0.270 Sum_probs=102.5
Q ss_pred cEEEEEecChhHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKK-HGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~-~G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||||||++..+..+...|+. .++.+. .+.++.+++..+.. ..||+|++|+.||.++|+++++.+++..
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~~~~~~~~l~~~~------- 78 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR-LDPDVILLDLNMKGMSGLDTLNALRRDG------- 78 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh-cCCCEEEEecCCCCCcHHHHHHHHHHhC-------
Confidence 4799999999999999999975 577775 68899999988763 6799999999999999999999998632
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|++++|..........++++|+++|+.||++.++|...+.+.+.
T Consensus 79 ---------------~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 79 ---------------VTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred ---------------CCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 24689999999888899999999999999999999999999987543
No 122
>PRK13435 response regulator; Provisional
Probab=99.17 E-value=5e-10 Score=113.63 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=97.9
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMP-EMDGFQATWQIRHLENEINEQ 1158 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP-~MDG~eatr~IR~~e~~~~~~ 1158 (1223)
..+|||+||++.....+...|+..|+.+. .++++.++++.+.. ..||+|++|+.|| .++|.++.+.++..
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~dliivd~~~~~~~~~~~~~~~l~~~------- 76 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR-RQPDVALVDVHLADGPTGVEVARRLSAD------- 76 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh-cCCCEEEEeeecCCCCcHHHHHHHHHhC-------
Confidence 35899999999999999999999999977 78999999987753 5799999999998 59999999888741
Q ss_pred hhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1159 i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+... ...++.+|+++|+.||++.++|...|.+...
T Consensus 77 ----------------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 77 ----------------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred ----------------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 1579999997643 3567889999999999999999999988764
No 123
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.16 E-value=2.9e-10 Score=115.04 Aligned_cols=99 Identities=18% Similarity=0.360 Sum_probs=78.0
Q ss_pred eCHHHHHHHHHHHHHHHHhccC---CCCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCcccccccc
Q 000920 733 GDPGRFRQIITNLVGNSIKFTQ---DKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKS 809 (1223)
Q Consensus 733 gD~~rL~QIL~NLLsNAIKfT~---~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~ 809 (1223)
.|...+.+++.|+++||++|.. .++.|.|.+...++
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~----------------------------------------- 73 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDH----------------------------------------- 73 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCC-----------------------------------------
Confidence 3667899999999999999862 35677776653221
Q ss_pred ccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEE
Q 000920 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889 (1223)
Q Consensus 810 w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S 889 (1223)
.+.++|.|+|.||++ .+++|+||+..+. ..+|+|+||++++++ .+++.+++
T Consensus 74 -------------------~~~i~I~D~G~gi~~--~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~ 124 (137)
T TIGR01925 74 -------------------EVYITVRDEGIGIEN--LEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDS 124 (137)
T ss_pred -------------------EEEEEEEEcCCCcCc--hhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEE
Confidence 578999999999983 6789999986543 235899999998874 57999999
Q ss_pred eCCCeEEEEEEE
Q 000920 890 EPGTGSTFSFTV 901 (1223)
Q Consensus 890 ~~g~GStF~f~L 901 (1223)
.+++|++|+++.
T Consensus 125 ~~~~Gt~v~i~~ 136 (137)
T TIGR01925 125 EKEKGTKIIMKK 136 (137)
T ss_pred CCCCCeEEEEEe
Confidence 999999998763
No 124
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.16 E-value=2.2e-10 Score=140.80 Aligned_cols=115 Identities=24% Similarity=0.415 Sum_probs=89.6
Q ss_pred EeCHHHHH---HHHHHHHHHHHhccCCCC---eEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCcccc
Q 000920 732 IGDPGRFR---QIITNLVGNSIKFTQDKG---HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVD 805 (1223)
Q Consensus 732 ~gD~~rL~---QIL~NLLsNAIKfT~~~G---~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~ 805 (1223)
.|++..++ +++.||++||++|+...| .|.|.+...+
T Consensus 28 lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g-------------------------------------- 69 (659)
T PRK14867 28 LGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLG-------------------------------------- 69 (659)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC--------------------------------------
Confidence 45555555 999999999999986544 5666554211
Q ss_pred ccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC--CCCCCCcccHHHHHHHHHHHc-C
Q 000920 806 RWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST--SRTYGGTGIGLSISRCLVELM-G 882 (1223)
Q Consensus 806 ~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st--sr~~gGTGLGLsI~k~LVelm-g 882 (1223)
...+.|+|+|+|+|||++.++++|++|+..+.-. ....|+.|+||+++..+.+.+ |
T Consensus 70 ---------------------~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G 128 (659)
T PRK14867 70 ---------------------SDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTG 128 (659)
T ss_pred ---------------------CcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcC
Confidence 1147799999999999999999999998543211 134578999999999999886 5
Q ss_pred CEEEEEEeCCCeEEEEEEEEecc
Q 000920 883 GEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 883 G~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
|.|.+.|.++.|++|++.+|+..
T Consensus 129 ~pI~I~S~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 129 KPLKITTSTGDGKIHEMEIKMSV 151 (659)
T ss_pred CcEEEEEEcCCCEEEEEEEEEEe
Confidence 56999999999999999998854
No 125
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.09 E-value=1.3e-08 Score=127.90 Aligned_cols=142 Identities=27% Similarity=0.461 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHh--cCcEEEEEecCCCCceEEeCHHHHHHH---HHHHHHHHHhcc------------CCCCeEE
Q 000920 698 HDVLDNVLSLFSSKANQ--KGIELAIYVSDRVPEVVIGDPGRFRQI---ITNLVGNSIKFT------------QDKGHIF 760 (1223)
Q Consensus 698 ~~ll~~vl~~f~~~a~~--k~I~l~v~v~~~~p~~v~gD~~rL~QI---L~NLLsNAIKfT------------~~~G~I~ 760 (1223)
..++...-.+.+..+.. |.++|.+.-.+ ..-|..-+.++ |++||.||+.|. ++.|.|.
T Consensus 393 ~~vf~RfpR~VRdla~~lgK~V~L~ieG~~-----telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~ 467 (716)
T COG0643 393 EQVFSRFPRMVRDLARKLGKQVELVIEGED-----TELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTIT 467 (716)
T ss_pred HHHHhhccHHHHHHHHHhCCeeEEEEecCC-----eeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEE
Confidence 34444444444444443 55666554322 23477777776 799999999994 3457777
Q ss_pred EEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCC
Q 000920 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840 (1223)
Q Consensus 761 V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiG 840 (1223)
++..... ..+.|+|+|.|.|
T Consensus 468 L~A~~~g------------------------------------------------------------n~ivIev~DDG~G 487 (716)
T COG0643 468 LSAYHEG------------------------------------------------------------NNIVIEVSDDGAG 487 (716)
T ss_pred EEEEcCC------------------------------------------------------------CeEEEEEeeCCCC
Confidence 7664322 1688999999999
Q ss_pred CCHHh------------------------HhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEE
Q 000920 841 IPLEA------------------------QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896 (1223)
Q Consensus 841 I~~e~------------------------~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GSt 896 (1223)
|+.+. ..-||.|-|.+... -..-.|-|.||=+||.-++.+||.|.|+|++|+||+
T Consensus 488 id~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~-VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~ 566 (716)
T COG0643 488 IDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQ-VTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTT 566 (716)
T ss_pred CCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchh-hhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCeE
Confidence 99653 44589996643322 234579999999999999999999999999999999
Q ss_pred EEEEEEecc
Q 000920 897 FSFTVTFTE 905 (1223)
Q Consensus 897 F~f~Lpl~~ 905 (1223)
|++.||++.
T Consensus 567 Fti~LPLTL 575 (716)
T COG0643 567 FTIRLPLTL 575 (716)
T ss_pred EEEecCcHH
Confidence 999999974
No 126
>PRK09191 two-component response regulator; Provisional
Probab=99.08 E-value=1.6e-09 Score=120.77 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=97.3
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPE-MDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~-MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||++||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+||+|+.||+ +||+++++.++..
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~-~~~dlvi~d~~~~~~~~g~e~l~~l~~~-------- 208 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK-TRPGLILADIQLADGSSGIDAVNDILKT-------- 208 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc-cCCCEEEEecCCCCCCCHHHHHHHHHHh--------
Confidence 4799999999999999999999999987 78899999998864 67999999999995 8999999988852
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
. ++|||++|+....... +...|+++|+.||++.++|...|.+...
T Consensus 209 --------------~-~~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 209 --------------F-DVPVIFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred --------------C-CCCEEEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 1 5799999997665433 3456789999999999999999988653
No 127
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.06 E-value=8.4e-10 Score=115.68 Aligned_cols=113 Identities=26% Similarity=0.310 Sum_probs=93.5
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCE-EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
..++|++||++.++..+...|...||. |.++.+|.++.+... .+.||+||||+.||.-|-.+... +...
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~-~~~pDvVildie~p~rd~~e~~~-~~~~-------- 74 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE-RLQPDVVILDIEMPRRDIIEALL-LASE-------- 74 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH-hcCCCEEEEecCCCCccHHHHHH-Hhhc--------
Confidence 358999999999999999999999985 667778888888765 47899999999999999333322 2210
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1217 (1223)
....|||++|++.+++..+.+.++|+.+||.||++...|+..+.
T Consensus 75 --------------~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 75 --------------NVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred --------------CCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 12468999999999999999999999999999999998876653
No 128
>PRK03660 anti-sigma F factor; Provisional
Probab=99.05 E-value=1.9e-09 Score=110.24 Aligned_cols=103 Identities=21% Similarity=0.420 Sum_probs=80.3
Q ss_pred eCHHHHHHHHHHHHHHHHhccCC---CCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCcccccccc
Q 000920 733 GDPGRFRQIITNLVGNSIKFTQD---KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKS 809 (1223)
Q Consensus 733 gD~~rL~QIL~NLLsNAIKfT~~---~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~ 809 (1223)
.|...+.+++.|++.||++|... ++.|.|.+...+
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~------------------------------------------ 72 (146)
T PRK03660 35 EELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEE------------------------------------------ 72 (146)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECC------------------------------------------
Confidence 36778999999999999998632 256666654321
Q ss_pred ccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEE
Q 000920 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889 (1223)
Q Consensus 810 w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S 889 (1223)
..+.++|.|+|.||++ ..++|+||++.+.. .+++|+||+|+++ +.+++.+++
T Consensus 73 ------------------~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~----~~~~GlGL~i~~~----~~~~i~~~~ 124 (146)
T PRK03660 73 ------------------EELEITVRDEGKGIED--IEEAMQPLYTTKPE----LERSGMGFTVMES----FMDEVEVES 124 (146)
T ss_pred ------------------CEEEEEEEEccCCCCh--HHHhhCCCcccCCC----CCCccccHHHHHH----hCCeEEEEe
Confidence 1578999999999986 56899999864432 2478999999875 456899999
Q ss_pred eCCCeEEEEEEEEecc
Q 000920 890 EPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 890 ~~g~GStF~f~Lpl~~ 905 (1223)
.++.||+|+++.++..
T Consensus 125 ~~~~Gt~~~i~~~~~~ 140 (146)
T PRK03660 125 EPGKGTTVRMKKYLKK 140 (146)
T ss_pred cCCCcEEEEEEEEecc
Confidence 9999999999998864
No 129
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.03 E-value=2.6e-09 Score=116.26 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=94.8
Q ss_pred EEEEEecChhHHHHHHHHHhhCCC---EEEEECCHHHHHHHhCCCCCccEEEEeCC--CCCCCHHHHHHHHHhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGA---IVTCVDCGRAAVDKLTPPHNFDACFMDLQ--MPEMDGFQATWQIRHLENEINE 1157 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~---~V~~a~~G~eAl~~l~~~~~~DlIlmDi~--MP~MDG~eatr~IR~~e~~~~~ 1157 (1223)
.||||||++..+..++.+|...++ .+..+.++.+++..+. ...||+||||+. ||.+||.+++++|++..
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~----- 75 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-SLRPSVVFINEDCFIHDASNSQRIKQIINQH----- 75 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-ccCCCEEEEeCcccCCCCChHHHHHHHHHHC-----
Confidence 489999999999999999987653 4567899999999876 357999999976 89999999999998632
Q ss_pred hhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCE-EEECCCCHHHHHHHHHHHhh
Q 000920 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD-YVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1158 ~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~dd-yl~KP~~~~~L~~~v~r~l~ 1221 (1223)
+.+|||++|+........ ++..|.+. |+.|+.+.++|..+|+....
T Consensus 76 -----------------p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 76 -----------------PNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILK 122 (207)
T ss_pred -----------------CCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHc
Confidence 247999999987765543 55566665 89999999999999988754
No 130
>PRK10693 response regulator of RpoS; Provisional
Probab=99.02 E-value=1.4e-09 Score=125.17 Aligned_cols=88 Identities=24% Similarity=0.335 Sum_probs=78.2
Q ss_pred EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHH
Q 000920 1110 CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189 (1223)
Q Consensus 1110 ~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~ 1189 (1223)
.+.+|.+|++.+.. ..||+|++|+.||+|||++++++||+.. .++|||++|+....+
T Consensus 2 ~a~~g~~al~~l~~-~~pDlVL~D~~mp~~~Gle~~~~ir~~~----------------------~~ipiI~lt~~~~~~ 58 (303)
T PRK10693 2 LAANGVDALELLGG-FTPDLIICDLAMPRMNGIEFVEHLRNRG----------------------DQTPVLVISATENMA 58 (303)
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcC----------------------CCCcEEEEECCCCHH
Confidence 47889999998864 6799999999999999999999998632 257999999999999
Q ss_pred hHHHHHHcCCCEEEECCC-CHHHHHHHHHHHh
Q 000920 1190 SNEQCMKCGMDDYVSKPF-EDEQLYTAVARFF 1220 (1223)
Q Consensus 1190 ~~~~~l~aG~ddyl~KP~-~~~~L~~~v~r~l 1220 (1223)
...+++++|++||+.||+ +.++|..+|.+.+
T Consensus 59 ~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l 90 (303)
T PRK10693 59 DIAKALRLGVQDVLLKPVKDLNRLREMVFACL 90 (303)
T ss_pred HHHHHHHCCCcEEEECCCCcHHHHHHHHHHHh
Confidence 999999999999999999 5899988887665
No 131
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.99 E-value=2.5e-07 Score=109.21 Aligned_cols=123 Identities=25% Similarity=0.443 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhh
Q 000920 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780 (1223)
Q Consensus 701 l~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l 780 (1223)
.+.+..........-++..........+..-..-..-+-+|+.-.++||+||++ ..++.|++...++
T Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~-A~~v~V~l~~~~~------------ 309 (365)
T COG4585 243 VEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQ-ATEVRVTLERTDD------------ 309 (365)
T ss_pred HHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccC-CceEEEEEEEcCC------------
Confidence 333333333444445666655544311111123466789999999999999994 5677777754332
Q ss_pred hhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC
Q 000920 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860 (1223)
Q Consensus 781 ~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st 860 (1223)
.+.++|.|+|.|.+++..
T Consensus 310 ------------------------------------------------~l~l~V~DnG~Gf~~~~~-------------- 327 (365)
T COG4585 310 ------------------------------------------------ELRLEVIDNGVGFDPDKE-------------- 327 (365)
T ss_pred ------------------------------------------------EEEEEEEECCcCCCcccc--------------
Confidence 588999999999876521
Q ss_pred CCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 861 sr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
+.|+||.=-|+=++.+||++.+.|.+|+||++++++|+
T Consensus 328 -----~~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 328 -----GGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred -----CCCcchhhHHHHHHHcCCEEEEEecCCCceEEEEecCC
Confidence 16799999999999999999999999999999999984
No 132
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.98 E-value=6e-09 Score=95.14 Aligned_cols=112 Identities=31% Similarity=0.500 Sum_probs=99.8
Q ss_pred EEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCc
Q 000920 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGES 1164 (1223)
Q Consensus 1085 LVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~ 1164 (1223)
|++|+++..+..+...|...|+.+..+.++.+++..+.. +.||++++|..++..+|++..+.++...
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l~~~~------------ 67 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE-EKPDLILLDIMMPGMDGLELLRRIRKRG------------ 67 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh-CCCCEEEEecCCCCCchHHHHHHHHHhC------------
Confidence 578999999999999999999999999999999988764 6799999999999999999999998631
Q ss_pred ccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1165 SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1165 ~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
..+|+++++..........++..|+++|+.||++.++|...+.+.
T Consensus 68 ----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 68 ----------PDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ----------CCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 247999999888888888999999999999999999999988764
No 133
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=98.89 E-value=6.6e-07 Score=100.78 Aligned_cols=226 Identities=16% Similarity=0.263 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000920 587 VGHIFHAAINRIAQVENDYHE-MMELKARAEAA----DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQ 661 (1223)
Q Consensus 587 v~~i~~~~i~ri~~ve~~~~e-l~e~k~~ae~a----~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~ 661 (1223)
.|..+-.++.|..++..+..+ +.+.+.-+|+. +..+.+...-+=.||-.-+++|..-..+.+.-..++..+....
T Consensus 263 ~Gl~LGiaIqrlrelnqrL~~EL~~~raLaeqListEEsiRk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas 342 (497)
T COG3851 263 TGLGLGIAIQRLRELNQRLQKELARNRALAEQLISTEESIRKDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAAS 342 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHH
Confidence 333344455665555444322 22222222222 2234444555556788889999988888877666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHH
Q 000920 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741 (1223)
Q Consensus 662 ~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QI 741 (1223)
.|+.-+.++..-+..+|..-|- .......+.+.+..+++.+. ..++||...++...+....-..-..-+-++
T Consensus 343 ~Ie~LslrI~~svrqLL~rLRP------~~LDdL~l~qai~~l~~Em~--~~ergihcq~~~~~n~~~ldet~rvTLyRl 414 (497)
T COG3851 343 LIEQLSLRIYDSVRQLLGRLRP------RQLDDLTLEQAIRSLLREME--LEERGIHCQLDWRINETALDETQRVTLYRL 414 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC------cccccccHHHHHHHHHHHhh--hhhcCeEEEeccccCcccCCcceeEeHHHH
Confidence 6666666666666666543321 11234567788888887765 456788776655422111000112247888
Q ss_pred HHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccc
Q 000920 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNT 821 (1223)
Q Consensus 742 L~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~ 821 (1223)
..-+++|-+|+. +...|.|..+..++
T Consensus 415 ~QE~LNNI~KHA-~AS~V~i~l~~~~e----------------------------------------------------- 440 (497)
T COG3851 415 CQELLNNICKHA-DASAVTIQLWQQDE----------------------------------------------------- 440 (497)
T ss_pred HHHHHHHHHhcc-ccceEEEEEeeCCc-----------------------------------------------------
Confidence 999999999999 56778887765432
Q ss_pred cccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 000920 822 MEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901 (1223)
Q Consensus 822 ~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~L 901 (1223)
.+.++|+|+|+|+|+.. +-+|.||.=.++=|..+||++.++| ..||...+++
T Consensus 441 -------~l~Lei~DdG~Gl~~~~-------------------~v~G~Gl~GmrERVsaLGG~ltlss--q~GTrviVnL 492 (497)
T COG3851 441 -------RLMLEIEDDGSGLPPGS-------------------GVQGFGLTGMRERVSALGGTLTLSS--QHGTRVIVNL 492 (497)
T ss_pred -------EEEEEEecCCcCCCCCC-------------------CccCcCcchHHHHHHHhCCceEEEe--ccCcEEEEec
Confidence 57899999999998641 3468888889999999999999999 5789999998
Q ss_pred E
Q 000920 902 T 902 (1223)
Q Consensus 902 p 902 (1223)
|
T Consensus 493 P 493 (497)
T COG3851 493 P 493 (497)
T ss_pred c
Confidence 8
No 134
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.87 E-value=5.8e-07 Score=98.88 Aligned_cols=195 Identities=25% Similarity=0.362 Sum_probs=131.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~l 700 (1223)
.|..++.-+.|-++|=|..|..++.+-.....++ ..+.....+.....| .++-+.|--+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sl-a~~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSL-ALIHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHH-HHHHHHHhcC---------CcceEcHHHH
Confidence 4566788899999999999999988765544443 223333222222222 2333433322 2345677788
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeC-HHHHHHHHHHHHHHHHhccC---CCCeEEEEEEEccCccccccch
Q 000920 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD-PGRFRQIITNLVGNSIKFTQ---DKGHIFVSVHLADDVRSKVDVK 776 (1223)
Q Consensus 701 l~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD-~~rL~QIL~NLLsNAIKfT~---~~G~I~V~v~~~~~~~~~~~~~ 776 (1223)
++.+...+.+....+++.+.....+.+ .+-.| ..-|--|+.-|++||+||.- ++|.|.|.++..++.
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~------- 157 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDG------- 157 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCC-------
Confidence 887777776654455677766554431 22222 34578899999999999964 378888887654321
Q ss_pred hhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCccc
Q 000920 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856 (1223)
Q Consensus 777 ~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~ 856 (1223)
. ...+.|.|+|.|+|.+. ++
T Consensus 158 --------------------------------------------------~-~~~l~v~deg~G~~~~~------~~--- 177 (221)
T COG3920 158 --------------------------------------------------G-RFLLTVWDEGGGPPVEA------PL--- 177 (221)
T ss_pred --------------------------------------------------C-eEEEEEEECCCCCCCCC------CC---
Confidence 0 35688999999998652 00
Q ss_pred CCCCCCCCCCcccHHHHHHHHH-HHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 857 DSSTSRTYGGTGIGLSISRCLV-ELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 857 d~stsr~~gGTGLGLsI~k~LV-elmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
...|+|+.+++.++ ++.||.+...+.. ||+|++++|...
T Consensus 178 --------~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 178 --------SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred --------CCCCcHHHHHHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 24689999999999 8999999887755 999999998753
No 135
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.77 E-value=1.7e-06 Score=102.51 Aligned_cols=184 Identities=26% Similarity=0.390 Sum_probs=126.7
Q ss_pred HHhhhhhHHHHHHHHHHHHH----Hh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHH
Q 000920 627 ATVSHEIRTPMNGVLGMLQM----LM---DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699 (1223)
Q Consensus 627 A~vSHELRTPLn~IlG~lel----L~---~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ 699 (1223)
+.|+-||---|.-.+.++.+ |. ..+..++.++.+..+....+.-..-+.++|.--|+ ....-++..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHH
Confidence 34556666666655555543 32 22344555666666666666556666666654443 223346778
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHH---HHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccch
Q 000920 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPG---RFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776 (1223)
Q Consensus 700 ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~---rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~ 776 (1223)
-++++++.|+.+ -|+.+.++.. .|... -|+. .+-||+.--++||+||+ ...+|.|+++..+
T Consensus 447 AL~~~~~~f~~q---tg~~~~l~~q--lp~~~-lpa~qqvHlLqIvREAlsNa~KHa-~As~i~V~~~~~~--------- 510 (574)
T COG3850 447 ALEQMLAEFSNQ---TGITVTLDYQ--LPPRA-LPAHQQVHLLQIVREALSNAIKHA-QASEIKVTVSQND--------- 510 (574)
T ss_pred HHHHHHHHHHhc---cCCeEEEecc--CCCCC-CCHHHHHHHHHHHHHHHHHHHHhc-ccCeEEEEEEecC---------
Confidence 888888877654 5666666543 33322 2433 46789999999999999 5778888886432
Q ss_pred hhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCccc
Q 000920 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856 (1223)
Q Consensus 777 ~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~ 856 (1223)
..+.+.|+|+|+|||+..
T Consensus 511 ---------------------------------------------------g~~~~~VeDnG~Gi~~~~----------- 528 (574)
T COG3850 511 ---------------------------------------------------GQVTLTVEDNGVGIDEAA----------- 528 (574)
T ss_pred ---------------------------------------------------CeEEEEEeeCCcCCCCcc-----------
Confidence 147899999999999752
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 000920 857 DSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902 (1223)
Q Consensus 857 d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lp 902 (1223)
. .+| --||.|.+.=++.+||.+.|++.+|+||++.+++|
T Consensus 529 e------~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 529 E------PSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred C------CCC-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEEec
Confidence 1 123 56899999999999999999999999999999886
No 136
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.75 E-value=3.9e-06 Score=102.15 Aligned_cols=66 Identities=29% Similarity=0.402 Sum_probs=55.0
Q ss_pred EEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCC-cccHHHHHHHHHHHcCCE--EEEEEeCCCeEEEEEEEEecc
Q 000920 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGG-TGIGLSISRCLVELMGGE--IGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 829 ~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gG-TGLGLsI~k~LVelmgG~--I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
.+.++|+|+|+||+++....+.+.- ++ .|+||+=+++.++.+-|. +.++|.+++||+..+.+|...
T Consensus 386 ~i~i~i~Dng~g~~~~~~~~~~~~~-----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~~ 454 (456)
T COG2972 386 VIQISISDNGPGIDEEKLEGLSTKG-----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKRE 454 (456)
T ss_pred EEEEEEeeCCCCCChhHHHHHHhhc-----------cCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehhh
Confidence 6889999999999998776664321 22 599999999999999887 689999999999999998643
No 137
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.73 E-value=1.6e-07 Score=98.37 Aligned_cols=104 Identities=19% Similarity=0.336 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHHHHhccCC---CCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccc
Q 000920 734 DPGRFRQIITNLVGNSIKFTQD---KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810 (1223)
Q Consensus 734 D~~rL~QIL~NLLsNAIKfT~~---~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w 810 (1223)
|...++.++..++.||++|... +|.|.|++...++
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~------------------------------------------ 76 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYED------------------------------------------ 76 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECC------------------------------------------
Confidence 5667889999999999999853 3567776654321
Q ss_pred cccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEe
Q 000920 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890 (1223)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~ 890 (1223)
.+.|.|+|+|+|++++.....|.||+...+... ..+.|+||.+++.|++. +.+.+
T Consensus 77 ------------------~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~~--~~~~G~GL~li~~l~d~----v~~~~- 131 (161)
T PRK04069 77 ------------------RLEIVVADNGVSFDYETLKSKLGPYDISKPIED--LREGGLGLFLIETLMDD----VTVYK- 131 (161)
T ss_pred ------------------EEEEEEEECCcCCChHHhccccCCCCCCCcccc--cCCCceeHHHHHHHHHh----EEEEc-
Confidence 588999999999999999999999876544322 24679999999999986 66665
Q ss_pred CCCeEEEEEEEEecc
Q 000920 891 PGTGSTFSFTVTFTE 905 (1223)
Q Consensus 891 ~g~GStF~f~Lpl~~ 905 (1223)
..|++|+++-.+..
T Consensus 132 -~~G~~v~~~k~~~~ 145 (161)
T PRK04069 132 -DSGVTVSMTKYINR 145 (161)
T ss_pred -CCCcEEEEEEEcCc
Confidence 46889988876643
No 138
>PRK15029 arginine decarboxylase; Provisional
Probab=98.73 E-value=5.8e-08 Score=122.51 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=85.1
Q ss_pred EEEEEecChh--------HHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHH----HHHHHHHh
Q 000920 1083 QILVVDDNMV--------NRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF----QATWQIRH 1150 (1223)
Q Consensus 1083 rILVVDDn~~--------n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~----eatr~IR~ 1150 (1223)
+||||||+.. .++.+...|+..||+|..+.++.+|++.+.....||+||+|++||+|||+ +++++||+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999995 69999999999999999999999999998643579999999999999998 89999985
Q ss_pred hhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCC--HHhHHHHHHcCCCEEEECCCCHHH
Q 000920 1151 LENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI--QASNEQCMKCGMDDYVSKPFEDEQ 1211 (1223)
Q Consensus 1151 ~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~--~~~~~~~l~aG~ddyl~KP~~~~~ 1211 (1223)
.. ..+|||++|+... ...-...++ -+++|+-+--+..+
T Consensus 82 ~~----------------------~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 121 (755)
T PRK15029 82 RQ----------------------QNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTAD 121 (755)
T ss_pred hC----------------------CCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHH
Confidence 21 2589999999886 333222222 25778877655444
No 139
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.61 E-value=8e-06 Score=95.56 Aligned_cols=131 Identities=27% Similarity=0.372 Sum_probs=93.9
Q ss_pred eeeecHHHHHHHHHHHHHHHHHhc--CcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcc----CCCCeEEEEEEE
Q 000920 692 FVPFHLHDVLDNVLSLFSSKANQK--GIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFT----QDKGHIFVSVHL 765 (1223)
Q Consensus 692 ~~~fdL~~ll~~vl~~f~~~a~~k--~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT----~~~G~I~V~v~~ 765 (1223)
...+.|.+-++.+-.-.+-.-.+- .+++.+++++.+-.. .=|. -++.=|+.|||||. .++|.|.|+|..
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~--~iP~---filQPLVENAIKHG~~~~~~~g~V~I~V~~ 488 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQV--QIPS---FILQPLVENAIKHGISQLKDTGRVTISVEK 488 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhc--cCch---hhhhHHHHHHHHhcccchhcCCceEEEEEE
Confidence 346778888888776655432222 244444444432211 1122 24667899999995 356888888865
Q ss_pred ccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHh
Q 000920 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845 (1223)
Q Consensus 766 ~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~ 845 (1223)
.+. .+++.|+|+|.||+++
T Consensus 489 ~d~------------------------------------------------------------~l~i~VeDng~li~p~- 507 (557)
T COG3275 489 EDA------------------------------------------------------------DLRIEVEDNGGLIQPD- 507 (557)
T ss_pred eCC------------------------------------------------------------eEEEEEecCCCCcCCC-
Confidence 432 4889999999999886
Q ss_pred HhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCC---EEEEEEeCCCeEEEEEEEEecc
Q 000920 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG---EIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 846 ~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG---~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
...|+|+||+.+++=++.+=| -+.++|.+..||+++|.+|+..
T Consensus 508 -----------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 508 -----------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred -----------------CCCCCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcc
Confidence 124899999999999888888 7999999999999999999864
No 140
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.61 E-value=1.3e-07 Score=105.70 Aligned_cols=112 Identities=26% Similarity=0.382 Sum_probs=93.1
Q ss_pred EEEEEecChhHHHHHHHHHhhCC--CEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHG--AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G--~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+|+++||++..+..+..++.... -.+..+.++.++++.+.. ..+|++|+|+.||+|+|+++.++||...
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fldI~~~~~~G~ela~~i~~~~-------- 73 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG-LRPDLVFLDIAMPDINGIELAARIRKGD-------- 73 (244)
T ss_pred cEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc-cCCCeEEEeeccCccchHHHHHHhcccC--------
Confidence 69999999999999999998322 223368889999998875 5899999999999999999999999742
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
...+|+++|++.. ....+++..+-|||.||++.+.|...+.+.
T Consensus 74 --------------~~~~Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 74 --------------PRPAIVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred --------------CCCeEEEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHH
Confidence 2457999999754 445566778899999999999999999864
No 141
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.45 E-value=1.9e-06 Score=90.15 Aligned_cols=102 Identities=20% Similarity=0.371 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHhccCC---CCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCcccccccccc
Q 000920 735 PGRFRQIITNLVGNSIKFTQD---KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWE 811 (1223)
Q Consensus 735 ~~rL~QIL~NLLsNAIKfT~~---~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~ 811 (1223)
...+.-++..++.||++|+.. +|.|.|.+...++
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~------------------------------------------- 76 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYED------------------------------------------- 76 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCC-------------------------------------------
Confidence 445888999999999999843 3577777654321
Q ss_pred ccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeC
Q 000920 812 NFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891 (1223)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~ 891 (1223)
.+.|.|+|+|.|++++.....|.|+...+... ...+.|+||.|+++|++ ++.+.+
T Consensus 77 -----------------~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~-- 131 (159)
T TIGR01924 77 -----------------RLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE-- 131 (159)
T ss_pred -----------------EEEEEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--
Confidence 58899999999999998888888876544332 23466999999999998 577776
Q ss_pred CCeEEEEEEEEec
Q 000920 892 GTGSTFSFTVTFT 904 (1223)
Q Consensus 892 g~GStF~f~Lpl~ 904 (1223)
+.|+++++...+.
T Consensus 132 ~~G~~l~l~k~~~ 144 (159)
T TIGR01924 132 DSGVTVAMTKYLN 144 (159)
T ss_pred CCCEEEEEEEEEc
Confidence 4567877775554
No 142
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.39 E-value=1.2e-06 Score=75.19 Aligned_cols=64 Identities=47% Similarity=0.762 Sum_probs=57.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000920 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIES 685 (1223)
Q Consensus 622 Ks~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKies 685 (1223)
+.+|++.++||+||||++|.++++.+.+...+++..++++.+..++.++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4679999999999999999999999887666667788999999999999999999999999765
No 143
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.36 E-value=0.00011 Score=82.32 Aligned_cols=186 Identities=18% Similarity=0.275 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-eeeecHHHHHHHHHHHHHHH
Q 000920 633 IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE-FVPFHLHDVLDNVLSLFSSK 711 (1223)
Q Consensus 633 LRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~-~~~fdL~~ll~~vl~~f~~~ 711 (1223)
|..-|-++.-.+++....-.++.+ .....+..++.+|..-|+++-.+|- .+.+. ....-|..-++-.++.|+
T Consensus 262 IsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH----~LRP~~LDDLGL~aALe~L~~~f~-- 334 (459)
T COG4564 262 ISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISH----DLRPRALDDLGLTAALEALLEDFK-- 334 (459)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhcc----ccChhhhhhhhHHHHHHHHHHHhh--
Confidence 344455666667776543222221 1224566777889999998866653 11111 112224444555555554
Q ss_pred HHhcCcEEEEEecCCCCceEE-eCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhhhhhccccccc
Q 000920 712 ANQKGIELAIYVSDRVPEVVI-GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHK 790 (1223)
Q Consensus 712 a~~k~I~l~v~v~~~~p~~v~-gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~ 790 (1223)
.+.|+++.+..+. .|..+. .-...|.+|..--++|-=+|+ ....|.|...-..
T Consensus 335 -~~tg~~itle~~~-~p~~l~~e~~talyRv~QEaltNIErHa-~Atrv~ill~~~~----------------------- 388 (459)
T COG4564 335 -ERTGIEITLEFDT-QPGKLKPEVATALYRVVQEALTNIERHA-GATRVTILLQQMG----------------------- 388 (459)
T ss_pred -hccCeEEEEEecC-CcccCCcHHHHHHHHHHHHHHHHHHhhc-CCeEEEEEeccCC-----------------------
Confidence 5678888887653 233322 224568899999999998988 3445555443111
Q ss_pred ccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccH
Q 000920 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIG 870 (1223)
Q Consensus 791 ~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLG 870 (1223)
..+...|+|+|.|.+.+... ..-.|||
T Consensus 389 -------------------------------------d~vql~vrDnG~GF~~~~~~----------------~~~~GiG 415 (459)
T COG4564 389 -------------------------------------DMVQLMVRDNGVGFSVKEAL----------------QKRHGIG 415 (459)
T ss_pred -------------------------------------cceEEEEecCCCCccchhhc----------------cCccccc
Confidence 15789999999999865321 1125999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 871 LSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 871 LsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
|--.++-+...||++.++|.|. ||..++.+|...
T Consensus 416 LRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~~~ 449 (459)
T COG4564 416 LRNMRERMAHFGGELEVESSPQ-GTELTVLLPLDA 449 (459)
T ss_pred cccHHHHHHHhCceEEEEecCC-CcEEEEEecchh
Confidence 9999999999999999999986 999999999753
No 144
>PF14501 HATPase_c_5: GHKL domain
Probab=98.28 E-value=1.1e-05 Score=77.53 Aligned_cols=95 Identities=26% Similarity=0.391 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHHHHhccCC---CCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccc
Q 000920 734 DPGRFRQIITNLVGNSIKFTQD---KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810 (1223)
Q Consensus 734 D~~rL~QIL~NLLsNAIKfT~~---~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w 810 (1223)
|+.-|-.+|.||++||++++.. ...|.|.+...+
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~------------------------------------------- 38 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREEN------------------------------------------- 38 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC-------------------------------------------
Confidence 4566889999999999999754 345665554322
Q ss_pred cccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEe
Q 000920 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890 (1223)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~ 890 (1223)
..+.|.|+++-.+ +. +.++ +++...++.|+||.+++++++.++|.+.++.+
T Consensus 39 -----------------~~~~i~i~N~~~~---~~-~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~ 89 (100)
T PF14501_consen 39 -----------------GFLVIIIENSCEK---EI-EKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESE 89 (100)
T ss_pred -----------------CEEEEEEEECCCC---cc-cccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEE
Confidence 1578899998544 11 2222 22345578999999999999999999999887
Q ss_pred CCCeEEEEEEEEe
Q 000920 891 PGTGSTFSFTVTF 903 (1223)
Q Consensus 891 ~g~GStF~f~Lpl 903 (1223)
.+ .|++++-+
T Consensus 90 ~~---~f~~~i~i 99 (100)
T PF14501_consen 90 DG---IFTVKIVI 99 (100)
T ss_pred CC---EEEEEEEE
Confidence 54 56665543
No 145
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.25 E-value=7.4e-06 Score=107.73 Aligned_cols=117 Identities=19% Similarity=0.154 Sum_probs=98.7
Q ss_pred CCCCcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhh
Q 000920 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE 1157 (1223)
Q Consensus 1078 ~~~~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~ 1157 (1223)
.+.+++|||+||++.++..+..+|...|+.+..+.++.+ +. ...||++++|..||.+++.+..........
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~-~~~~d~il~~~~~~~~~~~~~~~~~~~~~~---- 603 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LP-EAHYDILLLGLPVTFREPLTMLHERLAKAK---- 603 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hc-cCCCCEEEecccCCCCCCHHHHHHHHHhhh----
Confidence 356789999999999999999999999999999999887 22 357999999999999888876655543211
Q ss_pred hhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1158 ~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
....|+|++++.........+.+.|+++|+.||+...+|...+...
T Consensus 604 ----------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 649 (919)
T PRK11107 604 ----------------SMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEP 649 (919)
T ss_pred ----------------hcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHh
Confidence 1134788899999999999999999999999999999999888754
No 146
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.18 E-value=0.0002 Score=81.99 Aligned_cols=151 Identities=23% Similarity=0.340 Sum_probs=108.0
Q ss_pred eeecHHHHHHHHHHHHHHHHHhcCc---EEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCC----CCe----EEE
Q 000920 693 VPFHLHDVLDNVLSLFSSKANQKGI---ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQD----KGH----IFV 761 (1223)
Q Consensus 693 ~~fdL~~ll~~vl~~f~~~a~~k~I---~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~----~G~----I~V 761 (1223)
...++.++|.++.+..+..+..+=+ ++.+.-+......| .=|.-|.-++.-|+.||.++|-+ .+. |.|
T Consensus 214 ~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V 292 (414)
T KOG0787|consen 214 PRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKV 292 (414)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 3578999999998877766555432 23333222222221 35788999999999999998832 233 444
Q ss_pred EEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCC
Q 000920 762 SVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841 (1223)
Q Consensus 762 ~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI 841 (1223)
.|...+ ..+.|.|+|.|-||
T Consensus 293 ~V~~gd------------------------------------------------------------eDl~ikISDrGGGV 312 (414)
T KOG0787|consen 293 TVAKGD------------------------------------------------------------EDLLIKISDRGGGV 312 (414)
T ss_pred EEecCC------------------------------------------------------------cceEEEEecCCCCc
Confidence 443211 24678899999999
Q ss_pred CHHhHhhhcCCCcccCCCC------CCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 842 PLEAQVRIFTPFMQADSST------SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 842 ~~e~~~rLFepF~q~d~st------sr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
+.+..+++|.=-|...+.. ...-.|.|-||.|||...+..||.+.+.|-.|-||-..+.+...
T Consensus 313 ~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~l 381 (414)
T KOG0787|consen 313 PHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKAL 381 (414)
T ss_pred ChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccceEEEeccC
Confidence 9999999997655433222 22235999999999999999999999999999999998887543
No 147
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.05 E-value=3.7e-06 Score=99.83 Aligned_cols=90 Identities=28% Similarity=0.420 Sum_probs=80.0
Q ss_pred CEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEecc
Q 000920 1106 AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTAD 1185 (1223)
Q Consensus 1106 ~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~ 1185 (1223)
++|..+..|.+|+..+. .+.+|+++.|++||+|||+++++++++.. .+++++|+.
T Consensus 13 ~~v~~a~~g~~~l~~~~-~~~~~~~lld~~m~~~~~~~~~~~lk~~~------------------------~~~v~~t~~ 67 (435)
T COG3706 13 KEVATAKKGLIALAILL-DHKPDYKLLDVMMPGMDGFELCRRLKAEP------------------------ATVVMVTAL 67 (435)
T ss_pred hhhhhccchHHHHHHHh-cCCCCeEEeecccCCcCchhHHHHHhcCC------------------------cceEEEEec
Confidence 56777999999999886 48899999999999999999999998642 248999999
Q ss_pred CCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1186 VIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1186 ~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
...++..+.+++|++++++||++...+...+..+.
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~ 102 (435)
T COG3706 68 DDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLV 102 (435)
T ss_pred CCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhc
Confidence 99999999999999999999999999988876553
No 148
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=97.91 E-value=4.3e-05 Score=64.90 Aligned_cols=62 Identities=42% Similarity=0.717 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL-DAAQLDYAQTAHNSGKDLISLINDVLDQAK 682 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l-~~~q~~~l~~i~~s~~~Ll~LIndlLD~sK 682 (1223)
.+.++.+.++|||||||+++.++++.+..... .+...+++..+..++.++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45679999999999999999999998876432 566678889999999999999999998874
No 149
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.81 E-value=0.00016 Score=83.97 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=45.9
Q ss_pred EEEEEEecCCCCCHHhHhhhcCCCcccCCCC------CCCCCCcccHHHHHHHHHHHcCCEEEEEEeC--CCeEEEEE
Q 000920 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSST------SRTYGGTGIGLSISRCLVELMGGEIGFVSEP--GTGSTFSF 899 (1223)
Q Consensus 830 l~IsV~DTGiGI~~e~~~rLFepF~q~d~st------sr~~gGTGLGLsI~k~LVelmgG~I~v~S~~--g~GStF~f 899 (1223)
..|+|.|+|.||++++++++|++|+..+..+ ...+|--|.||+-...+ +.+.+.|.. +.+..+.+
T Consensus 52 ~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~ 124 (312)
T TIGR00585 52 KLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQA 124 (312)
T ss_pred EEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEE
Confidence 4599999999999999999999999765432 12345668888644333 378888875 44444433
No 150
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.58 E-value=0.00062 Score=67.70 Aligned_cols=94 Identities=19% Similarity=0.281 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHHHHhccCCC---CeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccc
Q 000920 734 DPGRFRQIITNLVGNSIKFTQDK---GHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810 (1223)
Q Consensus 734 D~~rL~QIL~NLLsNAIKfT~~~---G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w 810 (1223)
+..++.-++.-++.||++|...+ +.|.|.+....+
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~------------------------------------------ 65 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPD------------------------------------------ 65 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCC------------------------------------------
Confidence 34578899999999999998643 456665543221
Q ss_pred cccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEe
Q 000920 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890 (1223)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~ 890 (1223)
.+.|+|.|.|.|+++.....--..-. ......|+||.|.+.+++.+ .+ +
T Consensus 66 ------------------~l~i~v~D~G~~~d~~~~~~~~~~~~-------~~~~~~G~Gl~li~~l~D~~----~~-~- 114 (125)
T PF13581_consen 66 ------------------RLRISVRDNGPGFDPEQLPQPDPWEP-------DSLREGGRGLFLIRSLMDEV----DY-R- 114 (125)
T ss_pred ------------------EEEEEEEECCCCCChhhccCcccccC-------CCCCCCCcCHHHHHHHHcEE----EE-E-
Confidence 58899999999998875433221100 22346799999999999875 55 4
Q ss_pred CCCeEEEEEE
Q 000920 891 PGTGSTFSFT 900 (1223)
Q Consensus 891 ~g~GStF~f~ 900 (1223)
.+.|++++++
T Consensus 115 ~~~gn~v~l~ 124 (125)
T PF13581_consen 115 EDGGNTVTLR 124 (125)
T ss_pred CCCeEEEEEE
Confidence 7789988764
No 151
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.0007 Score=79.33 Aligned_cols=112 Identities=23% Similarity=0.427 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCC---eEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccc
Q 000920 734 DPGRFRQIITNLVGNSIKFTQDKG---HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810 (1223)
Q Consensus 734 D~~rL~QIL~NLLsNAIKfT~~~G---~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w 810 (1223)
-...|-|++.-|+.||+.+|.+.| .|.|.+...+
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~------------------------------------------- 69 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIG------------------------------------------- 69 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecC-------------------------------------------
Confidence 345699999999999999997766 3555554321
Q ss_pred cccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCC-C-CCCCCCcccHHHHHHHHHHHcCCE-EEE
Q 000920 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS-T-SRTYGGTGIGLSISRCLVELMGGE-IGF 887 (1223)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~s-t-sr~~gGTGLGLsI~k~LVelmgG~-I~v 887 (1223)
+....+.|+|||+|||.+..+++|-.+.-.+.- . ....|-.|||.+-|=-..++.-|+ +.|
T Consensus 70 ----------------~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V 133 (538)
T COG1389 70 ----------------KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRV 133 (538)
T ss_pred ----------------CceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEE
Confidence 225789999999999999999999765422211 1 112356789999888888888775 777
Q ss_pred EEeCCC-eEEEEEEEEec
Q 000920 888 VSEPGT-GSTFSFTVTFT 904 (1223)
Q Consensus 888 ~S~~g~-GStF~f~Lpl~ 904 (1223)
.|..+. ++...+.|-..
T Consensus 134 ~s~T~~s~~~~~~~l~id 151 (538)
T COG1389 134 ISSTGDSGTAYEYELKID 151 (538)
T ss_pred EecCCCCcceEEEEEEec
Confidence 776543 66666666554
No 152
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=97.05 E-value=0.0037 Score=59.94 Aligned_cols=108 Identities=25% Similarity=0.258 Sum_probs=80.6
Q ss_pred EEEecChhhhHHHHHHHHHhccc-eEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 930 ALVIDDKSIRAEVTRYHLQRLEM-AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 930 vLvVDd~~~~~~v~~~~L~~lg~-~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
++++||++..+..+...++..|+ .+..+.+..++...+.+. .++++++|....+. .+..+. +..+...
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~-------~~d~iiid~~~~~~-~~~~~~---~~i~~~~ 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKH-------PPDLIIIDLELPDG-DGLELL---EQIRQIN 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHS-------TESEEEEESSSSSS-BHHHHH---HHHHHHT
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhccc-------CceEEEEEeeeccc-cccccc---ccccccc
Confidence 68999999999999999999999 999999999999988654 47899999877663 333332 3333322
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccc
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIG 1054 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~ 1054 (1223)
.-+.++++....+..........|...++.||+....|..
T Consensus 70 ------~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~ 109 (112)
T PF00072_consen 70 ------PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRA 109 (112)
T ss_dssp ------TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHH
T ss_pred ------ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 2234455555555666667778999999999998877654
No 153
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=96.92 E-value=0.0046 Score=68.70 Aligned_cols=113 Identities=29% Similarity=0.292 Sum_probs=82.3
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
+++|+|||++.....+..+|+..|+.|..+.++.+|...... . ++++++|..+++. .|..+. +..+..
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-------~-~dlviLD~~lP~~-dG~~~~---~~iR~~ 68 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-------Q-PDLVLLDLMLPDL-DGLELC---RRLRAK 68 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-------C-CCEEEEECCCCCC-CHHHHH---HHHHhh
Confidence 379999999999999999999999999999999999877643 2 7889999877643 344333 333322
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ...|.+++. ...+..+.-.....|..+|+.||+.+..|.+.+.
T Consensus 69 ~~----~~~PIi~Lt-a~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~ 113 (229)
T COG0745 69 KG----SGPPIIVLT-ARDDEEDRVLGLEAGADDYLTKPFSPRELLARLR 113 (229)
T ss_pred cC----CCCcEEEEE-CCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHH
Confidence 11 134555544 4455555666667899999999999888876543
No 154
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.74 E-value=0.0069 Score=47.24 Aligned_cols=54 Identities=31% Similarity=0.471 Sum_probs=48.4
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP 1137 (1223)
+|+++||++..+..+...+...|+.+....++.++...+. .+.+|++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK-EEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCC
Confidence 6899999999999999999999999999999999998775 35799999998765
No 155
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.42 E-value=0.021 Score=59.06 Aligned_cols=92 Identities=23% Similarity=0.327 Sum_probs=64.1
Q ss_pred eCHHHHHHHHHHHHHHHHhccCC----CCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccc
Q 000920 733 GDPGRFRQIITNLVGNSIKFTQD----KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWK 808 (1223)
Q Consensus 733 gD~~rL~QIL~NLLsNAIKfT~~----~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~ 808 (1223)
-|-.+++-++.-++.||++|... .|.|.|.+...++
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~---------------------------------------- 75 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDG---------------------------------------- 75 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCC----------------------------------------
Confidence 36778999999999999999843 4888888765433
Q ss_pred cccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEE
Q 000920 809 SWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888 (1223)
Q Consensus 809 ~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~ 888 (1223)
.+.+.|.|.|+||.+ ...-+.|.+. +...-..-|+||.+.+++++ ++.++
T Consensus 76 --------------------~~~i~i~D~G~~~~~--~~~~~~~~~~----~~~~~~~~G~Gl~l~~~~~D----~~~~~ 125 (146)
T COG2172 76 --------------------KLEIRIWDQGPGIED--LEESLGPGDT----TAEGLQEGGLGLFLAKRLMD----EFSYE 125 (146)
T ss_pred --------------------eEEEEEEeCCCCCCC--HHHhcCCCCC----CCcccccccccHHHHhhhhe----eEEEE
Confidence 588999999988754 3445555521 11111233888998898875 57888
Q ss_pred EeCCCe
Q 000920 889 SEPGTG 894 (1223)
Q Consensus 889 S~~g~G 894 (1223)
+.++.+
T Consensus 126 ~~~~~~ 131 (146)
T COG2172 126 RSEDGR 131 (146)
T ss_pred eccCCc
Confidence 665553
No 156
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.36 E-value=0.019 Score=72.77 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=38.4
Q ss_pred EEEEEEecCCCCCHHhHhhhcCCCcccCCCCC------CCCCCcccHHHHHHHHHHHcCCEEEEEEeC
Q 000920 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS------RTYGGTGIGLSISRCLVELMGGEIGFVSEP 891 (1223)
Q Consensus 830 l~IsV~DTGiGI~~e~~~rLFepF~q~d~sts------r~~gGTGLGLsI~k~LVelmgG~I~v~S~~ 891 (1223)
..|+|+|+|.||+++.+..+|.++...+-.+- ..+|--|.||+-...+ +.+.+.|..
T Consensus 52 ~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 52 KLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred EEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 56999999999999999999998875432221 2334456677644443 356666654
No 157
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.08 E-value=0.034 Score=54.72 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=72.2
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEE-EEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC-FMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlI-lmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
||||||||..-+.-+..+|+=.|..+..+.+.+- ..... ...++.+ +....++ ...+.++.+-+.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~-~~~~~~~~v~~g~~~--~~~~~l~~l~~~---------- 66 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADW-SSPWEACAVILGSCS--KLAELLKELLKW---------- 66 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhh-hcCCcEEEEEecCch--hHHHHHHHHHhh----------
Confidence 5999999999999999999999999999986554 22222 2345544 4444444 223333333321
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
..++|++.+.......... .+-+-|..|++..+|...+++-
T Consensus 67 ------------~~~~Pvlllg~~~~~~~~~-----nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 67 ------------APHIPVLLLGEHDSPEELP-----NVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ------------CCCCCEEEECCCCcccccc-----CeeEecCCCCCHHHHHHHHHHh
Confidence 3478999998776551111 1555689999999999998863
No 158
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=95.98 E-value=0.02 Score=69.29 Aligned_cols=176 Identities=22% Similarity=0.280 Sum_probs=112.6
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.++|+|||++..+..+...|+..|+.|..+.+..+|...+... .++++++|..+++ ..|..+. +..+..
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-------~~~lvl~Di~mp~-~~Gl~ll---~~i~~~ 73 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-------PFDLVLLDIRMPG-MDGLELL---KEIKSR 73 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-------CCCEEEEecCCCC-CchHHHH---HHHHhh
Confidence 4699999999999999999999999999999999999988654 3688999987763 3344433 333332
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhh-----hc---CC-Cccc--
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQ-----KR---KK-PSLG-- 1076 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~-----~~---~~-~~~~-- 1076 (1223)
. ..+|.+++.+.+ +-...-+....|..+|+.||+.+..|...+............ .. .. .-.+
T Consensus 74 ~-----~~~pVI~~Tg~g-~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S 147 (464)
T COG2204 74 D-----PDLPVIVMTGHG-DIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGES 147 (464)
T ss_pred C-----CCCCEEEEeCCC-CHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecC
Confidence 2 257777665543 333344555678889999999988887665443321110000 00 00 0000
Q ss_pred ------------cCCCCcEEEEEecChhHHHHHHHHHhhCCC-------EEEEECCHHHHHHH
Q 000920 1077 ------------HLLKGKQILVVDDNMVNRRVAEGALKKHGA-------IVTCVDCGRAAVDK 1120 (1223)
Q Consensus 1077 ------------~~~~~~rILVVDDn~~n~~vl~~~L~~~G~-------~V~~a~~G~eAl~~ 1120 (1223)
--.+...|||.-..-.=.++++.++-+.+- .+-|+.=..+.++.
T Consensus 148 ~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 148 PAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLES 210 (464)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHH
Confidence 001234688888888888888888876652 34455545555543
No 159
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=95.95 E-value=0.08 Score=52.02 Aligned_cols=110 Identities=30% Similarity=0.442 Sum_probs=76.3
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHH-HHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ-LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~-~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
.+.++|+|||++..+..+...|+.+|..+..+.++. +|+..+.... .++++++|..+.... |..+. +..
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~------~~dlii~D~~mp~~~-G~~~~---~~l 73 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP------QPDLILLDINMPGMD-GIELL---RRL 73 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC------CCCEEEEeCCCCCCC-HHHHH---HHH
Confidence 467899999999999999999999999999999996 9988876531 467899998877433 33333 233
Q ss_pred HhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccc
Q 000920 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSV 1051 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~ 1051 (1223)
+.. ....| ++.+...............|...++.||+....
T Consensus 74 ~~~-----~~~~p-vv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~ 114 (130)
T COG0784 74 RAR-----GPNIP-VILLTAYADEADRERALAAGADDYLTKPIFLEE 114 (130)
T ss_pred HhC-----CCCCC-EEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHH
Confidence 322 13567 444443333332344455778889999976544
No 160
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.87 E-value=0.051 Score=71.92 Aligned_cols=119 Identities=22% Similarity=0.239 Sum_probs=84.4
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.++++|+|||++.....+...|+.+|+.+..+.++.+|+..+.. ..++++++|..++... |..+.. ..+
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-------~~~dlil~D~~mp~~~-G~~~~~---~ir 757 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ-------HRFDLVLMDIRMPGLD-GLETTQ---LWR 757 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-------CCCCEEEEeCCCCCCC-HHHHHH---HHH
Confidence 45789999999999999999999999999999999999987654 3578899998876533 333322 222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
..... .....|.+++ ...............|...++.||+....|...+.
T Consensus 758 ~~~~~-~~~~~pii~l-t~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~ 807 (921)
T PRK15347 758 DDPNN-LDPDCMIVAL-TANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALE 807 (921)
T ss_pred hchhh-cCCCCcEEEE-eCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Confidence 21100 1123454444 33444455566677899999999999888876654
No 161
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.40 E-value=0.053 Score=70.68 Aligned_cols=195 Identities=17% Similarity=0.217 Sum_probs=113.5
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.+.++|+|||++.....+...|+.+|+.+..+.++.+|+..+.. ..++++++|..+++. .|..... ..+
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-------~~~Dlvl~D~~mp~~-~G~e~~~---~ir 592 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP-------DEYDLVLLDIQLPDM-TGLDIAR---ELR 592 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc-------CCCCEEEEcCCCCCC-CHHHHHH---HHH
Confidence 46789999999999999999999999999999999999988753 356899999877653 2333332 223
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEE
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQIL 1085 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rIL 1085 (1223)
.... ....|.++++..... .........|...++.||+....|..++........... ....... ..
T Consensus 593 ~~~~---~~~~~~ii~~ta~~~-~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~~~~---~~~~~~~------~~ 659 (779)
T PRK11091 593 ERYP---REDLPPLVALTANVL-KDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQDDEE---STVTTEE------SS 659 (779)
T ss_pred hccc---cCCCCcEEEEECCch-HhHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccccccc---ccccccc------cc
Confidence 2211 013334444443332 334555678899999999998888776654322111000 0000000 00
Q ss_pred EEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHH
Q 000920 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149 (1223)
Q Consensus 1086 VVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR 1149 (1223)
-..++..+...+..++..+|... +.+++..+.....-.+-.++..++..|.-++.+...
T Consensus 660 ~~~~~~l~~~~l~~~~~~~g~~~-----~~~~l~~~~~~~~~~~~~l~~~l~~~d~~~~~~~ah 718 (779)
T PRK11091 660 KANEALLDIPMLEQYVELVGPKL-----ITDSLAVFEKMMPGYLSVLDSNLTARDQKGIVEEAH 718 (779)
T ss_pred cccccccCHHHHHHHHHhcCHHH-----HHHHHHHHHHhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 01455667777777777666421 334444432211111112244566777766644433
No 162
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=95.33 E-value=0.0095 Score=60.82 Aligned_cols=67 Identities=24% Similarity=0.408 Sum_probs=41.3
Q ss_pred EEEEEecCCCCCHHhHhhhcCCCcccCCC--CCCCCCCcccH--HHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEE
Q 000920 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSS--TSRTYGGTGIG--LSISRCLVELMGGEIGFVSEPG-TGSTFSFTVT 902 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFepF~q~d~s--tsr~~gGTGLG--LsI~k~LVelmgG~I~v~S~~g-~GStF~f~Lp 902 (1223)
.|.|.|+|.||+.+.+.++|......... .....|-.|+| +|+. .++..+.|.|... ...+++|...
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEe
Confidence 58999999999999999988665433220 12234567788 4432 4678899998764 3345555554
No 163
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.17 E-value=0.076 Score=70.65 Aligned_cols=116 Identities=27% Similarity=0.333 Sum_probs=85.5
Q ss_pred ccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 925 ~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
..+.++|+|||++..+..+...|+.+|+.+..+.++.+|+..+... .++++++|..++... |..+...+
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~-------~~DlVl~D~~mP~md-G~el~~~i--- 867 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN-------HIDIVLTDVNMPNMD-GYRLTQRL--- 867 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC-------CCCEEEEcCCCCCCC-HHHHHHHH---
Confidence 3567999999999999999999999999999999999999887543 578999998876533 44433333
Q ss_pred HhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
+... ...|.+++.+ .............|...++.||+....|...+.
T Consensus 868 r~~~-----~~~pII~lTa-~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~ 914 (924)
T PRK10841 868 RQLG-----LTLPVIGVTA-NALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLT 914 (924)
T ss_pred HhcC-----CCCCEEEEEC-CCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHH
Confidence 3221 2456555443 334445566677899999999998887776554
No 164
>PLN03029 type-a response regulator protein; Provisional
Probab=95.13 E-value=0.11 Score=57.44 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=80.5
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCC-------------CCCCcceEEEecccccchh
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST-------------SVLPQLALVLIDKDVWDKE 992 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~-------------~~~~~~~lvliD~~~~~~~ 992 (1223)
...++|+|||+......+...|+.+|+.+..+.++.+++..+...... .....++++++|..+....
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 356899999999999999999999999999999999998887532211 1123568999998776532
Q ss_pred hhHHHHHHHHHHHhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccc
Q 000920 993 IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLI 1053 (1223)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~ 1053 (1223)
|..+ +...+.... ....|.+++. ..............|...|+.||+....|.
T Consensus 87 -G~e~---l~~ir~~~~---~~~ipvIils-~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~ 139 (222)
T PLN03029 87 -GYDL---LKKIKESSS---LRNIPVVIMS-SENVPSRITRCLEEGAEEFFLKPVQLSDLN 139 (222)
T ss_pred -HHHH---HHHHHhccc---cCCCcEEEEe-CCCCHHHHHHHHHhCchheEECCCCHHHHH
Confidence 3332 223332211 1245655544 333344444556788889999999877664
No 165
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.72 E-value=0.24 Score=60.59 Aligned_cols=186 Identities=16% Similarity=0.132 Sum_probs=109.2
Q ss_pred EEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCC
Q 000920 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009 (1223)
Q Consensus 930 vLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1223)
+|+|||++.....+...++..|+.+..+.+..+|...+.. ..++++++|..+.+. .+..+.. ..+...
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-------~~~DlVllD~~~p~~-~g~~ll~---~l~~~~- 68 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR-------GQPDLLITDVRMPGE-DGLDLLP---QIKKRH- 68 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-------CCCCEEEEcCCCCCC-CHHHHHH---HHHHhC-
Confidence 4789999999999999999999999999999998877643 246888888776553 2333322 222211
Q ss_pred cccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEEEec
Q 000920 1010 LEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089 (1223)
Q Consensus 1010 ~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILVVDD 1089 (1223)
...|.++ +...............|...++.||+....+...+............. .... ...+....++.+
T Consensus 69 ----~~~~vIv-lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~-~~~~---~~~~~~~~lig~ 139 (463)
T TIGR01818 69 ----PQLPVIV-MTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHAQEQVAL-PADA---GEAEDSAELIGE 139 (463)
T ss_pred ----CCCeEEE-EeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHHHHHHhh-hhhh---hccccccceeec
Confidence 1344444 433333444455567888899999999888777654322211111100 0000 001123468899
Q ss_pred ChhHHHHHHHHHhhCCCEEEEE-----CCHHHHHHHh----CCCCCccEEEEeCCC
Q 000920 1090 NMVNRRVAEGALKKHGAIVTCV-----DCGRAAVDKL----TPPHNFDACFMDLQM 1136 (1223)
Q Consensus 1090 n~~n~~vl~~~L~~~G~~V~~a-----~~G~eAl~~l----~~~~~~DlIlmDi~M 1136 (1223)
++.++.++..+.+..+..+... ..|++.+... .....--+|..||..
T Consensus 140 s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~ 195 (463)
T TIGR01818 140 APAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAA 195 (463)
T ss_pred CHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCC
Confidence 9999999888766444332222 2355544322 211223456667654
No 166
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=94.69 E-value=0.088 Score=57.11 Aligned_cols=112 Identities=22% Similarity=0.297 Sum_probs=75.4
Q ss_pred EEEEecChhhhHHHHHHHHHhc-cceE-EEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 929 RALVIDDKSIRAEVTRYHLQRL-EMAV-HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~l-g~~v-~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
++|+|||++..+++-+.+++.+ |+.+ -.+.++++|...+.... .+++++|.-+++.. |+.+. ..++.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~-------pDLILLDiYmPd~~-Gi~lL---~~ir~ 70 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK-------PDLILLDIYMPDGN-GIELL---PELRS 70 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC-------CCEEEEeeccCCCc-cHHHH---HHHHh
Confidence 6899999999999998888875 5554 47889999998887542 38899998776643 44433 23332
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
... ..-.+++.+. .+-....+....|.++||.||+....+..+|.
T Consensus 71 ~~~-----~~DVI~iTAA-~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~ 115 (224)
T COG4565 71 QHY-----PVDVIVITAA-SDMETIKEALRYGVVDYLIKPFTFERLQQALT 115 (224)
T ss_pred cCC-----CCCEEEEecc-chHHHHHHHHhcCchhheecceeHHHHHHHHH
Confidence 211 1223333333 23333445567899999999999888876654
No 167
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.55 E-value=0.11 Score=69.37 Aligned_cols=119 Identities=24% Similarity=0.275 Sum_probs=85.0
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.+.++|+|||++.....+...|+.+|+.+..+.++.+|...+.. .+++++++|..+++. .|..+...+ +
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-------~~~dlvl~D~~mp~~-~g~~~~~~i---r 769 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ-------HAFDLALLDINLPDG-DGVTLLQQL---R 769 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC-------CCCCEEEECCCCCCC-CHHHHHHHH---H
Confidence 34589999999999999999999999999999999999988754 357899999877654 344333333 2
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
..... ....|.+ .+...............|...++.||+....|...+..
T Consensus 770 ~~~~~--~~~~pii-~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~ 819 (968)
T TIGR02956 770 AIYGA--KNEVKFI-AFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAV 819 (968)
T ss_pred hCccc--cCCCeEE-EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHH
Confidence 22111 0114544 44444444555666788999999999998888766543
No 168
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=94.24 E-value=0.14 Score=67.94 Aligned_cols=117 Identities=22% Similarity=0.262 Sum_probs=83.0
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.++++|+|||++.........|+.+|+.+..+.++.+|+..+... .+++++++|..+++.. |..+. +..+
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~------~~~Dlvl~D~~mp~~~-G~~~~---~~lr 749 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS------EPFAAALVDFDLPDYD-GITLA---RQLA 749 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC------CCCCEEEEeCCCCCCC-HHHHH---HHHH
Confidence 467899999999999999999999999999999999999876432 3578999998876533 33332 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
... ...|.+++. ..............|...++.||+....|...+..
T Consensus 750 ~~~-----~~~~ii~~t-~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~ 796 (914)
T PRK11466 750 QQY-----PSLVLIGFS-AHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAH 796 (914)
T ss_pred hhC-----CCCCEEEEe-CCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHH
Confidence 211 145554443 33334444455667888899999998888766543
No 169
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=94.22 E-value=0.14 Score=59.39 Aligned_cols=114 Identities=26% Similarity=0.318 Sum_probs=81.1
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
....+++|||.+.....++..|+..|+.+..+.+++.|...+... ++++++.|..+++... ..+ ++.++
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~-------~~dlvllD~~mp~mdg-~ev---~~~lk 81 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEE-------PPDLVLLDVRMPEMDG-AEV---LNKLK 81 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhccc-------CCceEEeeccCCCccH-HHH---HHHHH
Confidence 356899999999999999999999999999999999988776532 3788899987765543 222 22232
Q ss_pred h-cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccc
Q 000920 1006 R-KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIG 1054 (1223)
Q Consensus 1006 ~-~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~ 1054 (1223)
. .+. ...+|.+++.+-+..+ ........|.++++.||+.+..|..
T Consensus 82 ~~~p~---t~~ip~i~lT~~~d~~-~~~~~~~~g~~dyl~KP~~~~~l~~ 127 (360)
T COG3437 82 AMSPS---TRRIPVILLTAYADSE-DRQRALEAGADDYLSKPISPKELVA 127 (360)
T ss_pred hcCCc---ccccceEEEeecCChH-HHHHHHHhhHHHHhcCCCCHHHHHH
Confidence 2 211 2467877776654443 3333444889999999998766543
No 170
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=94.21 E-value=0.079 Score=67.25 Aligned_cols=50 Identities=28% Similarity=0.439 Sum_probs=33.8
Q ss_pred EEEEEecCCCCCHHhHhh--------hcCCCcccC---CCC-CCCCCCcccHHHHHHHHHHH
Q 000920 831 LVTVEDTGVGIPLEAQVR--------IFTPFMQAD---SST-SRTYGGTGIGLSISRCLVEL 880 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~r--------LFepF~q~d---~st-sr~~gGTGLGLsI~k~LVel 880 (1223)
.|+|.|+|.|||.+..+. +|....-.. ... ....|=.|.|++.+..+-+.
T Consensus 70 ~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~ 131 (631)
T PRK05559 70 SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR 131 (631)
T ss_pred cEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheee
Confidence 489999999999998888 887643211 111 11223369999998888543
No 171
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=93.02 E-value=0.45 Score=51.38 Aligned_cols=113 Identities=26% Similarity=0.370 Sum_probs=76.6
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
++++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+. .+..+ ....+..
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-------~~~dlvild~~l~~~-~g~~l---~~~lr~~ 69 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE-------HLPDIAIVDLGLPDE-DGLSL---IRRWRSN 69 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-------CCCCEEEEECCCCCC-CHHHH---HHHHHhc
Confidence 368999999999999999999999999999999998876543 346788888765442 23322 2233321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++. ...+..........|...++.||+....+...+.
T Consensus 70 ~-----~~~pii~ls-~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~ 113 (223)
T PRK10816 70 D-----VSLPILVLT-ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQ 113 (223)
T ss_pred C-----CCCCEEEEE-cCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHH
Confidence 1 145655543 3333334445556788899999998887765543
No 172
>PRK11173 two-component response regulator; Provisional
Probab=92.98 E-value=0.47 Score=51.95 Aligned_cols=111 Identities=22% Similarity=0.234 Sum_probs=76.5
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.++|++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+. .+..+. ...+..
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~-~g~~~~---~~lr~~ 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-------NDINLVIMDINLPGK-NGLLLA---RELREQ 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-------CCCCEEEEcCCCCCC-CHHHHH---HHHhcC
Confidence 479999999999999999999999999999999998877643 246788888776543 233332 223221
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|.+++. ...+..........|...++.||+....|...+
T Consensus 73 ------~~~pii~lt-~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i 114 (237)
T PRK11173 73 ------ANVALMFLT-GRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 (237)
T ss_pred ------CCCCEEEEE-CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 134555443 333333444456778889999999887775443
No 173
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=92.91 E-value=0.51 Score=50.45 Aligned_cols=113 Identities=26% Similarity=0.334 Sum_probs=75.8
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
++++++||++.....+...|+..|+.+..+.+..++...+... .++++++|....+.. +... +...+..
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-------~~d~illd~~~~~~~-g~~~---~~~l~~~ 69 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG-------HYSLVVLDLGLPDED-GLHL---LRRWRQK 69 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC-------CCCEEEEECCCCCCC-HHHH---HHHHHhc
Confidence 3689999999999999999999999999999998888766432 357888887664432 2222 2233322
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++ ....+..........|...++.||+....+...+.
T Consensus 70 ~-----~~~pii~l-s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~ 113 (222)
T PRK10643 70 K-----YTLPVLIL-TARDTLEDRVAGLDVGADDYLVKPFALEELHARIR 113 (222)
T ss_pred C-----CCCcEEEE-ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHH
Confidence 1 13455554 33333344445556788899999998877765543
No 174
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=92.84 E-value=0.52 Score=50.99 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=76.2
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
++++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|...... .+..+ +...+..
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-------~~~dlvild~~~~~~-~g~~~---~~~lr~~ 69 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-------GDYDLIILDIMLPDV-NGWDI---VRMLRSA 69 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-------CCCCEEEEECCCCCC-CHHHH---HHHHHhc
Confidence 368999999999999999999999999999999888776533 246788888765443 22222 2233321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++ ...............|...++.||+....+...+.
T Consensus 70 ~-----~~~pii~l-s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~ 113 (227)
T PRK09836 70 N-----KGMPILLL-TALGTIEHRVKGLELGADDYLVKPFAFAELLARVR 113 (227)
T ss_pred C-----CCCCEEEE-EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Confidence 1 13455444 33334444445567888899999999887766543
No 175
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=92.76 E-value=0.56 Score=51.29 Aligned_cols=114 Identities=21% Similarity=0.231 Sum_probs=77.6
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
..+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|...... .+..+ ....+.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~-~g~~~---~~~lr~ 73 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR-------ESFHLMVLDLMLPGE-DGLSI---CRRLRS 73 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-------CCCCEEEEeCCCCCC-CHHHH---HHHHHh
Confidence 3579999999999999999999999999999999988776543 346788888766543 23322 223332
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ...|.+++ +...+..........|...++.||+....|...+.
T Consensus 74 ~~-----~~~pii~l-s~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~ 118 (239)
T PRK09468 74 QN-----NPTPIIML-TAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIR 118 (239)
T ss_pred cC-----CCCCEEEE-ECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHH
Confidence 11 13455544 33334444445556788899999999877765543
No 176
>PRK13856 two-component response regulator VirG; Provisional
Probab=92.63 E-value=0.53 Score=51.84 Aligned_cols=111 Identities=19% Similarity=0.261 Sum_probs=76.4
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
++|++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+. .+..+ +...+..
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvi~d~~l~~~-~g~~l---~~~i~~~- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS-------ETVDVVVVDLNLGRE-DGLEI---VRSLATK- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-------CCCCEEEEeCCCCCC-CHHHH---HHHHHhc-
Confidence 68999999999999999999999999999999988876543 246788888766543 23332 2333321
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|.+++................|...++.||+....|...+
T Consensus 71 -----~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i 113 (241)
T PRK13856 71 -----SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARI 113 (241)
T ss_pred -----CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHH
Confidence 1456655543232333344556778889999999987776544
No 177
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=92.13 E-value=0.75 Score=49.49 Aligned_cols=111 Identities=21% Similarity=0.237 Sum_probs=75.5
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.++++|||++.....+...++..|+.+..+.+..++...+.. ..++++++|...... .+..+ +...+..
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~-~g~~~---~~~lr~~ 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN-------QHVDLILLDINLPGE-DGLML---TRELRSR 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-------CCCCEEEEeCCCCCC-CHHHH---HHHHHhC
Confidence 478999999999999999999999999999999998876543 246788888765442 23222 2233321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|.+++. ...+..........|...++.||+....|...+
T Consensus 72 ------~~~~ii~l~-~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i 113 (221)
T PRK10766 72 ------STVGIILVT-GRTDSIDRIVGLEMGADDYVTKPLELRELLVRV 113 (221)
T ss_pred ------CCCCEEEEE-CCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHH
Confidence 134555443 333444444555788889999999887766543
No 178
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=92.11 E-value=0.79 Score=48.95 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=74.2
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
++++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+. .+... +...+..
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~-~g~~~---~~~i~~~ 69 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-------APYDAVILDLTLPGM-DGRDI---LREWREK 69 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-------CCCCEEEEECCCCCC-CHHHH---HHHHHhc
Confidence 368999999999999999999999999988988888776532 246788888766542 23322 2233321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
. ...|.+++ ....+..........|...++.||+....+...+
T Consensus 70 ~-----~~~~ii~l-t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i 112 (219)
T PRK10336 70 G-----QREPVLIL-TARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 (219)
T ss_pred C-----CCCcEEEE-ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHH
Confidence 1 13454444 3333333334455678889999999877776544
No 179
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=92.10 E-value=0.75 Score=49.69 Aligned_cols=113 Identities=23% Similarity=0.232 Sum_probs=75.9
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccch-hhhHHHHHHHHHHHhc
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDK-EIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~-~~~~~~~~~~~~~~~~ 1007 (1223)
+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+. ..+..+. ...+..
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~~~~g~~~~---~~i~~~ 71 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ-------RLPDLAIIDIGLGEEIDGGFMLC---QDLRSL 71 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh-------CCCCEEEEECCCCCCCCCHHHHH---HHHHhc
Confidence 68999999999999999999999999988898888876643 245788888776542 1233332 222221
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++. ..............|...++.||+....+...+.
T Consensus 72 ~-----~~~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~ 115 (227)
T TIGR03787 72 S-----ATLPIIFLT-ARDSDFDTVSGLRLGADDYLTKDISLPHLLARIT 115 (227)
T ss_pred C-----CCCCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 1 135655543 3333344445567788899999998777765543
No 180
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=92.02 E-value=4.1 Score=48.13 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=67.2
Q ss_pred CcEEEEecChhhhHHHHHHHHHhc-cceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRL-EMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~l-g~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
..++|+|||++.....+...|... ++.+. .+.+..++...+.. ..++++++|..+.... +.... +.+
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~-------~~~DlVllD~~mp~~d-gle~l---~~i 71 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK-------LNPDVITLDVEMPVMD-GLDAL---EKI 71 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh-------hCCCEEEEeCCCCCCC-hHHHH---HHH
Confidence 358999999999999998899876 77776 78899988876543 2467888887765432 33222 222
Q ss_pred HhcCCcccccCCCeEEEEeccCC-ccchhhhhcCCceeeeccccc
Q 000920 1005 RRKGGLEISRNLPKIFLLATSIS-ETDRDELKSDGIVTLLTKPLR 1048 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~-~~~~~~~~~~g~~~~l~KPl~ 1048 (1223)
+... ..|.+++...... ..........|...++.||+.
T Consensus 72 ~~~~------~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 72 MRLR------PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred HHhC------CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 2211 2455554432211 122234456788899999984
No 181
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=92.01 E-value=0.45 Score=49.06 Aligned_cols=114 Identities=21% Similarity=0.233 Sum_probs=78.0
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
..|+|||+......+...+++-|+.|..+.+.++++...... .+...++|...-+ ..|......+.+.+.
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~-------~PayAvvDlkL~~-gsGL~~i~~lr~~~~-- 80 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTA-------PPAYAVVDLKLGD-GSGLAVIEALRERRA-- 80 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcC-------CCceEEEEeeecC-CCchHHHHHHHhcCC--
Confidence 578999999999999999999999999999999999887654 3344555655433 445544433333221
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCC
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED 1059 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~ 1059 (1223)
. -.++++..-.+....-+.-..|...|+.||-....+...+...
T Consensus 81 ------d-~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 81 ------D-MRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred ------c-ceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 1 1234444333444455556678889999999888877776654
No 182
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=91.98 E-value=0.78 Score=49.24 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=76.0
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
++++++||++.....+...++..|+.+..+.+..++...+.. ..++++++|....... +... +...+..
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~-------~~~dlvi~d~~~~~~~-g~~~---~~~l~~~ 69 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK-------DDYALIILDIMLPGMD-GWQI---LQTLRTA 69 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-------CCCCEEEEECCCCCCC-HHHH---HHHHHcC
Confidence 368999999999999999999999999999999988876543 3467888887655432 2222 2233321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
...|.+++ ....+..........|...++.||+....+...+.
T Consensus 70 ------~~~~ii~l-s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~ 112 (223)
T PRK11517 70 ------KQTPVICL-TARDSVDDRVRGLDSGANDYLVKPFSFSELLARVR 112 (223)
T ss_pred ------CCCCEEEE-ECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 13455544 33334444445567788899999998877765543
No 183
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=91.95 E-value=0.71 Score=49.42 Aligned_cols=115 Identities=24% Similarity=0.341 Sum_probs=75.5
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+.. +.. .++..+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-------~~~d~vi~d~~~~~~~-g~~---~~~~l~~~ 71 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-------RGPDLILLDWMLPGTS-GIE---LCRRLRRR 71 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh-------cCCCEEEEECCCCCCc-HHH---HHHHHHcc
Confidence 478999999999999999999999999988999888877643 2467888887665432 222 22333321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ....|.+++ ...............|...++.||+....+...+.
T Consensus 72 ~~---~~~~~ii~l-s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~ 117 (226)
T TIGR02154 72 PE---TRAIPIIML-TARGEEEDRVRGLETGADDYITKPFSPRELLARIK 117 (226)
T ss_pred cc---CCCCCEEEE-ecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHH
Confidence 10 013454444 33333333444556788899999998877765443
No 184
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=91.92 E-value=0.8 Score=50.14 Aligned_cols=110 Identities=19% Similarity=0.191 Sum_probs=75.8
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|...... .+.... ...+..
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-------~~~dlvild~~l~~~-~g~~~~---~~ir~~- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR-------EQPDLVLLDIMLPGK-DGMTIC---RDLRPK- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh-------CCCCEEEEeCCCCCC-CHHHHH---HHHHhc-
Confidence 68999999999999999999999999999999988877643 246788888766543 233332 222221
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|.+++. ..............|...++.||+....+...+
T Consensus 71 -----~~~pii~l~-~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i 112 (240)
T PRK10701 71 -----WQGPIVLLT-SLDSDMNHILALEMGACDYILKTTPPAVLLARL 112 (240)
T ss_pred -----CCCCEEEEE-CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 134555443 333334444556788889999999887776544
No 185
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=91.82 E-value=0.77 Score=49.75 Aligned_cols=115 Identities=23% Similarity=0.331 Sum_probs=76.6
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+.. +... +...+..
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~~-g~~~---~~~l~~~ 71 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-------PWPDLILLDWMLPGGS-GIQF---IKHLKRE 71 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-------cCCCEEEEeCCCCCCC-HHHH---HHHHHhc
Confidence 478999999999999999999999999999999988876642 2467888887665432 2222 2233322
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ....|.+++. ...+..........|...++.||+....|...+.
T Consensus 72 ~~---~~~~pvi~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~ 117 (229)
T PRK10161 72 SM---TRDIPVVMLT-ARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117 (229)
T ss_pred cc---cCCCCEEEEE-CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 11 1134555543 3333444445567888899999998877765543
No 186
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=91.78 E-value=0.46 Score=57.80 Aligned_cols=114 Identities=20% Similarity=0.210 Sum_probs=77.6
Q ss_pred EEEEecChhhhHHHHHHHHH--hccceE-EEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 929 RALVIDDKSIRAEVTRYHLQ--RLEMAV-HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~--~lg~~v-~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
+||+|||++..++-+...+. .+|+.+ -.|.++.+|++.+... ++++++.|-.++.. .|+.+...+++..
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~-------~pDiviTDI~MP~m-dGLdLI~~ike~~ 74 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQET-------QPDIVITDINMPGM-DGLDLIKAIKEQS 74 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhc-------CCCEEEEecCCCCC-cHHHHHHHHHHhC
Confidence 68999999999998887764 456664 4789999999998764 57888999877654 3554443333311
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED 1059 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~ 1059 (1223)
.-...++++.-..-.-.......|+..+|.||+.-..|..+|...
T Consensus 75 ---------p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki 119 (475)
T COG4753 75 ---------PDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKI 119 (475)
T ss_pred ---------CCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHH
Confidence 123344443322223344555789999999999988888877543
No 187
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=91.77 E-value=0.8 Score=49.38 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=75.8
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|..+.+. .+..+. ...+..
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~-~g~~~~---~~lr~~ 70 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-------RKPDLIILDLGLPDG-DGIEFI---RDLRQW 70 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-------CCCCEEEEeCCCCCC-CHHHHH---HHHHcC
Confidence 368999999999999999999999999999898888765532 246788888766543 233322 222221
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
...|.+++. ...+..........|...++.||+....+...+.
T Consensus 71 ------~~~pvi~lt-~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~ 113 (225)
T PRK10529 71 ------SAIPVIVLS-ARSEESDKIAALDAGADDYLSKPFGIGELQARLR 113 (225)
T ss_pred ------CCCCEEEEE-CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 145655543 3333334445566788899999999877765543
No 188
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=91.54 E-value=0.59 Score=50.06 Aligned_cols=116 Identities=22% Similarity=0.225 Sum_probs=79.1
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.-|-+|||+...++.+...|...|+.+....|.++-+.... ....-.++.|..++. ..|..++..+.+.
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~-------~~~pGclllDvrMPg-~sGlelq~~L~~~--- 73 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP-------LDRPGCLLLDVRMPG-MSGLELQDRLAER--- 73 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc-------CCCCCeEEEecCCCC-CchHHHHHHHHhc---
Confidence 35789999999999999999999999999988876654421 122345667766654 3455555444332
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDP 1060 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~ 1060 (1223)
+ ..+|.+++..-+-- .-.-+....|.+++|.||++-+.|+..++...
T Consensus 74 ~-----~~~PVIfiTGhgDI-pmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al 120 (202)
T COG4566 74 G-----IRLPVIFLTGHGDI-PMAVQAMKAGAVDFLEKPFSEQDLLDAVERAL 120 (202)
T ss_pred C-----CCCCEEEEeCCCCh-HHHHHHHHcchhhHHhCCCchHHHHHHHHHHH
Confidence 1 26788877643322 23334456789999999999999888776543
No 189
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=91.54 E-value=1 Score=48.73 Aligned_cols=110 Identities=26% Similarity=0.281 Sum_probs=74.4
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
+++++||++.....+...|+..|+.+..+.+..++...+. ..++++++|....+.. +..+ ++..+...
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------~~~d~vl~d~~~~~~~-g~~~---~~~l~~~~ 70 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--------DSIDLLLLDVMMPKKN-GIDT---LKELRQTH 70 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--------cCCCEEEEeCCCCCCc-HHHH---HHHHHhcC
Confidence 6899999999999999999999999998889988887642 1357888887665432 3222 23333221
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
..|.+++ ...............|...++.||+....+...+.
T Consensus 71 ------~~~ii~l-t~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~ 112 (232)
T PRK10955 71 ------QTPVIML-TARGSELDRVLGLELGADDYLPKPFNDRELVARIR 112 (232)
T ss_pred ------CCcEEEE-ECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHH
Confidence 2454444 33333334445567788899999998877765553
No 190
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=91.28 E-value=3.4 Score=41.38 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=71.7
Q ss_pred ecChhHHHHHHHHHhhCCCEEEEECC---HHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHH-hhhhhhhhhhhcCC
Q 000920 1088 DDNMVNRRVAEGALKKHGAIVTCVDC---GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR-HLENEINEQIASGE 1163 (1223)
Q Consensus 1088 DDn~~n~~vl~~~L~~~G~~V~~a~~---G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR-~~e~~~~~~i~~g~ 1163 (1223)
|.+..=...+..+|+..||+|..... .++.++.+. ...+|+|.+-..|+.. .+.++.+. .+... |
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~-~~~~d~V~iS~~~~~~--~~~~~~~~~~L~~~-------~- 78 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI-QEDVDVIGLSSLSGGH--MTLFPEVIELLREL-------G- 78 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcccchhh--HHHHHHHHHHHHhc-------C-
Confidence 55556667788899999999988553 566666665 4679999998877533 23333322 22110 0
Q ss_pred cccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 000920 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217 (1223)
Q Consensus 1164 ~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1217 (1223)
...+ .|++-+....++.++..++|+|+|+..=-+.++...-++
T Consensus 79 ----------~~~i-~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 ----------AGDI-LVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred ----------CCCC-EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 1133 455565566778899999999999998888877765543
No 191
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=91.25 E-value=1.1 Score=48.81 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=74.5
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccc--eEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccch--hhhHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEM--AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDK--EIGLVLHYMLK 1002 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~--~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~--~~~~~~~~~~~ 1002 (1223)
+++++++||++.....+...|+..+. .+..+.+..++...+.. ..++++++|....+. ..+..+. +
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-------~~~DlvllD~~l~~~~~~~g~~~~---~ 72 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-------LDAHVLITDLSMPGDKYGDGITLI---K 72 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-------CCCCEEEEeCcCCCCCCCCHHHHH---H
Confidence 46899999999999989999987665 26677888888876643 235788888766542 1333332 2
Q ss_pred HHHhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1003 QQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1003 ~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
..+... ...| +++++...+..........|...|+.||.....+..++.
T Consensus 73 ~l~~~~-----~~~~-iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~ 121 (216)
T PRK10840 73 YIKRHF-----PSLS-IIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALA 121 (216)
T ss_pred HHHHHC-----CCCc-EEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHH
Confidence 322211 1234 444444434444455667899999999988777765543
No 192
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=91.23 E-value=0.98 Score=50.64 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=75.8
Q ss_pred cEEEEecChhhhHHHHHHHHHhc-cce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRL-EMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~l-g~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.++|++||++.....+...+... ++. +..+.+..++...+.. ..++++++|..+.... |..+.. ..+
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~-------~~~DlvllD~~mp~~d-G~~~l~---~i~ 71 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE-------QQPDVVVLDIIMPHLD-GIGVLE---KLN 71 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh-------cCCCEEEEeCCCCCCC-HHHHHH---HHH
Confidence 57999999999999888888754 444 4468899999887653 2468889987765432 333322 222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
.... ...|.++++...............|...++.||+....|...+..
T Consensus 72 ~~~~----~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~ 120 (262)
T TIGR02875 72 EIEL----SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQ 120 (262)
T ss_pred hhcc----ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence 2111 122455555544444444556678888999999998887766543
No 193
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=91.13 E-value=0.26 Score=62.55 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=33.1
Q ss_pred EEEEEecCCCCCHHh--------Hhhhc-CCCccc--CCCCCC-CCCCcccHHHHHHHHHHHc
Q 000920 831 LVTVEDTGVGIPLEA--------QVRIF-TPFMQA--DSSTSR-TYGGTGIGLSISRCLVELM 881 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~--------~~rLF-epF~q~--d~stsr-~~gGTGLGLsI~k~LVelm 881 (1223)
.|+|.|+|.|||.+. .+-+| .+.... +....+ ..|=.|.||+.+..+-+.+
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~l 125 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKRV 125 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCeE
Confidence 389999999999887 66677 332211 111111 2233699999999988743
No 194
>CHL00148 orf27 Ycf27; Reviewed
Probab=91.11 E-value=1.2 Score=48.39 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=76.3
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
.++++++||++.....+...++..|+.+..+.+..+++..+.. ..++++++|....+.. +.... ...+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~-------~~~d~illd~~~~~~~-g~~~~---~~l~~ 74 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK-------EQPDLVILDVMMPKLD-GYGVC---QEIRK 74 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-------cCCCEEEEeCCCCCCC-HHHHH---HHHHh
Confidence 4689999999999999999999999999888888888776543 2457888887665432 33332 22222
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++. ..............|...++.||+....|...+.
T Consensus 75 ~------~~~~ii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~ 118 (240)
T CHL00148 75 E------SDVPIIMLT-ALGDVSDRITGLELGADDYVVKPFSPKELEARIR 118 (240)
T ss_pred c------CCCcEEEEE-CCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHH
Confidence 1 135555543 3333333345556788899999998887765543
No 195
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=90.99 E-value=1.1 Score=47.58 Aligned_cols=113 Identities=16% Similarity=0.239 Sum_probs=74.7
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
++++++||++.....+...|+..|+.+. .+.+..++...+.. ..++++++|....+.. +..+ +...+.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-------~~~dlvi~d~~~~~~~-g~~~---~~~l~~ 69 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-------LKPDIVIIDVDIPGVN-GIQV---LETLRK 69 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc-------cCCCEEEEeCCCCCCC-HHHH---HHHHHh
Confidence 4689999999999999999999999986 68888888876543 2457888887654432 2222 222222
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ...| ++++...............|...++.||+....+...+.
T Consensus 70 ~~-----~~~~-ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~ 114 (204)
T PRK09958 70 RQ-----YSGI-IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIE 114 (204)
T ss_pred hC-----CCCe-EEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHH
Confidence 11 1234 344443334444455567888899999998877766554
No 196
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=90.87 E-value=1.1 Score=49.09 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=75.4
Q ss_pred CcEEEEecChhhhHHHHHHHHHhc-cc-eEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRL-EM-AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~l-g~-~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
..+++++||++.....+...+.+. ++ .+..+.+..+|...+... .++++++|..+.+.. |..+. +..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~-------~pdlvllD~~mp~~~-gle~~---~~l 72 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF-------KPGLILLDNYLPDGR-GINLL---HEL 72 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc-------CCCEEEEeCCCCCCc-HHHHH---HHH
Confidence 368999999999999888888864 67 467889999998776532 457888888765533 33332 222
Q ss_pred HhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
+... ...| +++++..............|...++.||+....|...+.
T Consensus 73 ~~~~-----~~~~-iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~ 119 (225)
T PRK10046 73 VQAH-----YPGD-VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 (225)
T ss_pred HhcC-----CCCC-EEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHH
Confidence 2211 1233 344443333334445557788899999998888776654
No 197
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=90.74 E-value=1.3 Score=47.45 Aligned_cols=113 Identities=24% Similarity=0.209 Sum_probs=74.4
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++||++...+.+...|...|+.+..+.+..++...+.. ..++++++|....+. .+... ++..+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvl~d~~~~~~-~g~~~---~~~l~~~ 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ-------QPPDLVILDVGLPDI-SGFEL---CRQLLAF 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc-------CCCCEEEEeCCCCCC-CHHHH---HHHHHhh
Confidence 479999999999998898999999999888888888766532 245778888766543 23222 2233322
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++. ..............|...++.||+....+...+.
T Consensus 73 ~-----~~~~ii~ls-~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~ 116 (228)
T PRK11083 73 H-----PALPVIFLT-ARSDEVDRLVGLEIGADDYVAKPFSPREVAARVR 116 (228)
T ss_pred C-----CCCCEEEEE-cCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHH
Confidence 1 134555443 3333333344556788899999998877765543
No 198
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=90.74 E-value=1.1 Score=44.53 Aligned_cols=96 Identities=14% Similarity=0.153 Sum_probs=70.5
Q ss_pred HHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhhhhhhhhhhcCCcccccccCC
Q 000920 1095 RVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE--MDGFQATWQIRHLENEINEQIASGESSAEMFGNV 1172 (1223)
Q Consensus 1095 ~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~--MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~ 1172 (1223)
..+...|++.|++|..+.+.++|+..+.....++.|++|+. ++ ....++++.||+..
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~-------------------- 65 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRERN-------------------- 65 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHHS--------------------
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHhC--------------------
Confidence 44667788899999999999999999987677899999986 11 12345777777643
Q ss_pred CCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHH
Q 000920 1173 GLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLY 1213 (1223)
Q Consensus 1173 ~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~ 1213 (1223)
..+||.+++.....+..-...-.-.++|+-..-+-.+++
T Consensus 66 --~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~fi 104 (115)
T PF03709_consen 66 --FGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEFI 104 (115)
T ss_dssp --TT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHHH
T ss_pred --CCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHHH
Confidence 268999999876555555556667889998876554443
No 199
>PRK15115 response regulator GlrR; Provisional
Probab=90.68 E-value=0.78 Score=55.79 Aligned_cols=114 Identities=23% Similarity=0.276 Sum_probs=78.7
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
..++|+|||++.....+...++..|+.+..+.+..+|...+... .++++++|..+.+.. +..+. ...+.
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~-------~~dlvilD~~lp~~~-g~~ll---~~l~~ 73 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE-------KVDLVISDLRMDEMD-GMQLF---AEIQK 73 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC-------CCCEEEEcCCCCCCC-HHHHH---HHHHh
Confidence 36899999999999999999999999999999999998776532 457888887765432 33332 22222
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ...|.+++ ....+..........|...++.||+....|...+.
T Consensus 74 ~~-----~~~pvIvl-t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~ 118 (444)
T PRK15115 74 VQ-----PGMPVIIL-TAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAID 118 (444)
T ss_pred cC-----CCCcEEEE-ECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHH
Confidence 11 23454444 33333344445567888899999998877766553
No 200
>PRK14084 two-component response regulator; Provisional
Probab=90.56 E-value=1.1 Score=49.42 Aligned_cols=112 Identities=15% Similarity=0.256 Sum_probs=72.1
Q ss_pred cEEEEecChhhhHHHHHHHHHhccc--eEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEM--AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~--~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
++++++||++.....+...+..++. .+..+.+..+++..+.. ..++++++|.++.+. .|..+...+ +
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~-------~~~dlv~lDi~m~~~-~G~~~~~~i---~ 69 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI-------NQYDIIFLDINLMDE-SGIELAAKI---Q 69 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh-------cCCCEEEEeCCCCCC-CHHHHHHHH---H
Confidence 3689999999999999999988763 46678888888877643 246788998877643 344433322 2
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
... ..|.++.++.. .. ........|...++.||+....+..++..
T Consensus 70 ~~~------~~~~iI~~t~~-~~-~~~~~~~~~~~~yl~KP~~~~~l~~~l~~ 114 (246)
T PRK14084 70 KMK------EPPAIIFATAH-DQ-FAVKAFELNATDYILKPFEQKRIEQAVNK 114 (246)
T ss_pred hcC------CCCEEEEEecC-hH-HHHHHHhcCCcEEEECCCCHHHHHHHHHH
Confidence 211 22334333322 22 22334456778999999988777766543
No 201
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=90.24 E-value=0.85 Score=62.53 Aligned_cols=115 Identities=24% Similarity=0.247 Sum_probs=81.5
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
...++|+|||++..+..+...|+.+|+.+..+.+..+|+..+.. .+++++++|..+.+. .|..+... .+
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-------~~~dlil~D~~mp~~-~g~~~~~~---i~ 1025 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM-------QHYDLLITDVNMPNM-DGFELTRK---LR 1025 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc-------CCCCEEEEeCCCCCC-CHHHHHHH---HH
Confidence 34689999999999999999999999999999999999887743 356889999776543 23333222 22
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
... ...|.+++ ...............|...++.||+....|...+.
T Consensus 1026 ~~~-----~~~pii~l-t~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~ 1071 (1197)
T PRK09959 1026 EQN-----SSLPIWGL-TANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLS 1071 (1197)
T ss_pred hcC-----CCCCEEEE-ECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHH
Confidence 211 23565444 33344444555667889999999999887766553
No 202
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=90.07 E-value=1.1 Score=59.20 Aligned_cols=115 Identities=18% Similarity=0.165 Sum_probs=77.4
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
++.++++|||++.........|..+|+.+..+.+..+++..+... ...+++++++.. ...+.... ...+
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~-----~~~~DlVll~~~---~~~g~~l~---~~l~ 764 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKG-----PERFDLVLVDDR---LLDEEQAA---AALH 764 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC-----CCCceEEEECCC---CCCHHHHH---HHHH
Confidence 567899999999999999999999999999999999999887543 134677777322 11222222 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
... ...|.+++. ..............| ..++.||+....|...+..
T Consensus 765 ~~~-----~~ipIIvls-~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~ 810 (828)
T PRK13837 765 AAA-----PTLPIILGG-NSKTMALSPDLLASV-AEILAKPISSRTLAYALRT 810 (828)
T ss_pred hhC-----CCCCEEEEe-CCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHH
Confidence 211 244554444 333444444555667 8899999998888766543
No 203
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=90.07 E-value=0.88 Score=55.19 Aligned_cols=114 Identities=21% Similarity=0.255 Sum_probs=77.7
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
..++++|||++.....+...++.+|+.+..+.+..++...+.. ..++++++|..+.+. .|..+...+ +.
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-------~~~DlvilD~~m~~~-~G~~~~~~i---r~ 73 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-------QVFDLVLCDVRMAEM-DGIATLKEI---KA 73 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc-------CCCCEEEEeCCCCCC-CHHHHHHHH---Hh
Confidence 4689999999999999999999999999999999998877643 246788998877553 233332222 22
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ...|.+++. ...+..........|...++.||+....+...+.
T Consensus 74 ~~-----~~~~vi~lt-~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~ 118 (441)
T PRK10365 74 LN-----PAIPVLIMT-AYSSVETAVEALKTGALDYLIKPLDFDNLQATLE 118 (441)
T ss_pred hC-----CCCeEEEEE-CCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHH
Confidence 11 134544443 3333333444556778889999998877766554
No 204
>PRK13435 response regulator; Provisional
Probab=89.77 E-value=0.74 Score=46.40 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=82.9
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
..+++++|+++.....+...+...|+.+. .+++..++...+.. ..++++++|........+.... ...+
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~dliivd~~~~~~~~~~~~~---~~l~ 74 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR-------RQPDVALVDVHLADGPTGVEVA---RRLS 74 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh-------cCCCEEEEeeecCCCCcHHHHH---HHHH
Confidence 46899999999999999999998899876 67888888766532 2467888887654322233322 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEE
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQIL 1085 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rIL 1085 (1223)
.. ...|.+++. .... .......|...++.||+....+...+...... ... .......+.+++
T Consensus 75 ~~------~~~pii~ls-~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~----~~~----~~~~~~~~~~~~ 136 (145)
T PRK13435 75 AD------GGVEVVFMT-GNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSAR----RVG----DRASGPTPMGVF 136 (145)
T ss_pred hC------CCCCEEEEe-CCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhc----Ccc----ccCCCCCCCCcC
Confidence 21 134544443 2211 12334568889999999888776655432110 000 111123446788
Q ss_pred EEecChhH
Q 000920 1086 VVDDNMVN 1093 (1223)
Q Consensus 1086 VVDDn~~n 1093 (1223)
..+|+..|
T Consensus 137 ~~~~~~~~ 144 (145)
T PRK13435 137 LAPATLTN 144 (145)
T ss_pred CCCCCCCC
Confidence 87777654
No 205
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=89.74 E-value=1.5 Score=53.85 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=77.8
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.++|+|||++.....+...|++.|+.+..+.+..++...+.. ..++++++|..+.+. .+..+.. ..+..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~-------~~~DlvllD~~lp~~-dgl~~l~---~ir~~ 72 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-------KTPDVLLSDIRMPGM-DGLALLK---QIKQR 72 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-------CCCCEEEECCCCCCC-CHHHHHH---HHHhh
Confidence 479999999999999999999999999999999999887753 246788888776543 2333322 22221
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++. ..............|...++.||+....+...+.
T Consensus 73 ~-----~~~pvIvlt-~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~ 116 (469)
T PRK10923 73 H-----PMLPVIIMT-AHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVE 116 (469)
T ss_pred C-----CCCeEEEEE-CCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHH
Confidence 1 134555443 3333334445567788899999998777665443
No 206
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=89.62 E-value=0.54 Score=59.96 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHhccCC--CCeEEEEEE
Q 000920 734 DPGRFRQIITNLVGNSIKFTQD--KGHIFVSVH 764 (1223)
Q Consensus 734 D~~rL~QIL~NLLsNAIKfT~~--~G~I~V~v~ 764 (1223)
|+.-|.+++.-||.||+.-... ...|.|.++
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~ 66 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 66 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEe
Confidence 5677999999999999983322 236666553
No 207
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=89.59 E-value=1.7 Score=48.17 Aligned_cols=115 Identities=19% Similarity=0.309 Sum_probs=72.9
Q ss_pred cEEEEecChhhhHHHHHHHHHhc-cce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRL-EMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~l-g~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.+++++||++.........|.+. ++. +..+.+..++...+... ...++++++|..+.+.. |..+. ...+
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~DlvilD~~~p~~~-G~eli---~~l~ 72 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNS-----DTPIDLILLDIYMQQEN-GLDLL---PVLH 72 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhc-----CCCCCEEEEecCCCCCC-cHHHH---HHHH
Confidence 37899999999999888888764 665 44678888887765421 12467888887765432 33332 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
... ...|.++ +....+..........|...++.||+....+..++.
T Consensus 73 ~~~-----~~~~vI~-ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~ 118 (239)
T PRK10430 73 EAG-----CKSDVIV-ISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 (239)
T ss_pred hhC-----CCCCEEE-EECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 211 1344444 444444444455667788899999998877765553
No 208
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=89.43 E-value=0.52 Score=60.40 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHHHHhccCC--CCeEEEEEE
Q 000920 734 DPGRFRQIITNLVGNSIKFTQD--KGHIFVSVH 764 (1223)
Q Consensus 734 D~~rL~QIL~NLLsNAIKfT~~--~G~I~V~v~ 764 (1223)
|+.-|.+++.-||.||+.-... ...|.|.++
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~ 59 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIN 59 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEe
Confidence 5667999999999999983222 345666553
No 209
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=89.30 E-value=1.6 Score=53.25 Aligned_cols=114 Identities=21% Similarity=0.202 Sum_probs=77.9
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
..++|+|||++.....+...+...|+.+..+.+..++...+... .++++++|..+.+. .+..+. ...+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-------~~dlillD~~~p~~-~g~~ll---~~i~~ 72 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI-------HPDVVLMDIRMPEM-DGIKAL---KEMRS 72 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-------CCCEEEEeCCCCCC-CHHHHH---HHHHh
Confidence 45799999999999999999999999999999999998876532 46788888776543 233322 22222
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ...|.+++. ...+..........|...++.||+....+...+.
T Consensus 73 ~~-----~~~pvI~lt-~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~ 117 (457)
T PRK11361 73 HE-----TRTPVILMT-AYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQ 117 (457)
T ss_pred cC-----CCCCEEEEe-CCCCHHHHHHHHHCCccEEEecccCHHHHHHHHh
Confidence 11 245555543 3333334445567888899999998777665544
No 210
>PRK05218 heat shock protein 90; Provisional
Probab=89.24 E-value=1.3 Score=56.27 Aligned_cols=57 Identities=18% Similarity=0.413 Sum_probs=36.6
Q ss_pred EEEEEecCCCCCHHhHhhhcCCCccc-----------C-CCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeC
Q 000920 831 LVTVEDTGVGIPLEAQVRIFTPFMQA-----------D-SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFepF~q~-----------d-~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~ 891 (1223)
.|+|+|||+||+.+++...|...-.. + .....-.|-.|+|+.=| =..+-++.|.|..
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~----f~va~~v~V~Sr~ 142 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSA----FMVADKVTVITRS 142 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhh----hhccCEEEEEEcC
Confidence 38999999999999988876433221 0 01122345678888522 2335678888875
No 211
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.19 E-value=13 Score=38.25 Aligned_cols=118 Identities=12% Similarity=0.116 Sum_probs=84.2
Q ss_pred CcEEEEE----ecChhHHHHHHHHHhhCCCEEEEECC---HHHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhh
Q 000920 1081 GKQILVV----DDNMVNRRVAEGALKKHGAIVTCVDC---GRAAVDKLTPPHNFDACFMDLQMPEMDG--FQATWQIRHL 1151 (1223)
Q Consensus 1081 ~~rILVV----DDn~~n~~vl~~~L~~~G~~V~~a~~---G~eAl~~l~~~~~~DlIlmDi~MP~MDG--~eatr~IR~~ 1151 (1223)
+.+||+. |....-..++..+|+..||+|...-. .++.++.+. ..++|+|.+-..|+.... -++.+++|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~-~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI-ETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4578888 88888899999999999999998543 566666665 478999999988874321 2233333321
Q ss_pred hhhhhhhhhcCCcccccccCCCCCcccEEEEeccC------CHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADV------IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1152 e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~------~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
. ..+++|++ -+.. ..++.+++.+.|+|......-+.++....+++.++
T Consensus 82 ~---------------------~~~~~i~v-GG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 82 G---------------------LGDILLYV-GGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred C---------------------CCCCeEEE-ECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1 12445443 3332 35567789999999999999999999999988765
No 212
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=88.97 E-value=4.9 Score=47.20 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=66.9
Q ss_pred cEEEEecChhhhHHHHHHHH-HhccceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHL-QRLEMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L-~~lg~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
+++|+|||++..+..+...| +..++.+. .+.+..++...+.. ..++++++|..+.... +......+ +
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~-------~~pDlVllD~~mp~~~-G~e~l~~l---~ 69 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA-------QPPDVILMDLEMPRMD-GVEATRRI---M 69 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc-------cCCCEEEEcCCCCCCC-HHHHHHHH---H
Confidence 37899999999999888888 57788775 68899999887653 2468888887765432 33332222 2
Q ss_pred hcCCcccccCCCeEEEEeccCC-ccchhhhhcCCceeeecccc
Q 000920 1006 RKGGLEISRNLPKIFLLATSIS-ETDRDELKSDGIVTLLTKPL 1047 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~-~~~~~~~~~~g~~~~l~KPl 1047 (1223)
.. ...|.+++...... ..........|...++.||+
T Consensus 70 ~~------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 70 AE------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred HH------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 21 13565555433211 12223445678889999998
No 213
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=88.95 E-value=3.3 Score=40.92 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=61.2
Q ss_pred ecChhHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1088 DDNMVNRRVAEGALKKHGAIVTCVD---CGRAAVDKLTPPHNFDACFMDLQMPEM--DGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1088 DDn~~n~~vl~~~L~~~G~~V~~a~---~G~eAl~~l~~~~~~DlIlmDi~MP~M--DG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
|....-..++..+|+..||+|.... ..++.++.+. ..++|+|.+-..|... +..++.+.+|+..+
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~-~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~--------- 79 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK-EEDADAIGLSGLLTTHMTLMKEVIEELKEAGL--------- 79 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHcCC---------
Confidence 5556667889999999999996643 2455566665 4689999888775443 22334444443210
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEEC
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~K 1205 (1223)
..+ .|++.+.......+.+.+.|+|.|+..
T Consensus 80 ------------~~~-~i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 80 ------------DDI-PVLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred ------------CCC-eEEEECCCCChhHHHHHHcCCeEEECC
Confidence 133 455666655555678899999888763
No 214
>PRK14083 HSP90 family protein; Provisional
Probab=88.92 E-value=0.46 Score=60.02 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=33.2
Q ss_pred EEEEEecCCCCCHHhHhhhcCCCcc----cC---CCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeC
Q 000920 831 LVTVEDTGVGIPLEAQVRIFTPFMQ----AD---SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFepF~q----~d---~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~ 891 (1223)
.|+|+|||+||+.+...+.|-.... .. .......|.-|+|..=|-.+ +-++.|.|..
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~v----ad~v~V~Tr~ 127 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFLV----ADEIVVVSRS 127 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEEe----cCEEEEEecc
Confidence 5899999999999998887632221 10 01112346778886543332 3345555544
No 215
>PRK09483 response regulator; Provisional
Probab=88.58 E-value=2.3 Score=45.50 Aligned_cols=113 Identities=17% Similarity=0.221 Sum_probs=72.9
Q ss_pred cEEEEecChhhhHHHHHHHHHhc-cceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRL-EMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~l-g~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.+++++||++.....+...|+.. ++.+. .+.+..++...+.. .+++++++|....+.. +..+. +..+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvi~d~~~~~~~-g~~~~---~~l~ 70 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT-------NAVDVVLMDMNMPGIG-GLEAT---RKIL 70 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh-------cCCCEEEEeCCCCCCC-HHHHH---HHHH
Confidence 37899999999999999999875 77764 67888888776643 2467888887664432 33222 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
... ...| ++++...............|...++.||.....+..++.
T Consensus 71 ~~~-----~~~~-ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~ 116 (217)
T PRK09483 71 RYT-----PDVK-IIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIR 116 (217)
T ss_pred HHC-----CCCe-EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 211 1334 344443334444445566788899999998777766553
No 216
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=87.80 E-value=2.7 Score=45.56 Aligned_cols=110 Identities=21% Similarity=0.272 Sum_probs=74.3
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+.. +.... ...+..
T Consensus 12 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvl~d~~~~~~~-g~~~~---~~l~~~- 79 (240)
T PRK10710 12 RILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ-------TPPDLILLDLMLPGTD-GLTLC---REIRRF- 79 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-------CCCCEEEEeCCCCCCC-HHHHH---HHHHhc-
Confidence 79999999999999999999999999999999888876643 2457788887654432 33222 222221
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|.+++. ..............|...++.||+....|...+
T Consensus 80 -----~~~pii~l~-~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i 121 (240)
T PRK10710 80 -----SDIPIVMVT-AKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 (240)
T ss_pred -----CCCCEEEEE-cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHH
Confidence 134555443 333333344455678889999999877765544
No 217
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.61 E-value=1.6 Score=49.59 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=72.1
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
++++|||+......+...|.+.|..+..+++..+|+..+... .++++++|-.+.. ..|+.+....+++.
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~-------kpDLifldI~mp~-~ngiefaeQvr~i~--- 70 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF-------KPDLIFLDIVMPY-MNGIEFAEQVRDIE--- 70 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc-------CCCEEEEEeecCC-ccHHHHHHHHHHhh---
Confidence 789999999999999999999998888999999999988654 4577788766543 23455544444332
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|-+++.+- .+. ..........+++.||+....|-.++
T Consensus 71 -----~~v~iifIssh--~ey-a~dsf~~n~~dYl~KPvt~ekLnraI 110 (361)
T COG3947 71 -----SAVPIIFISSH--AEY-ADDSFGMNLDDYLPKPVTPEKLNRAI 110 (361)
T ss_pred -----ccCcEEEEecc--hhh-hhhhcccchHhhccCCCCHHHHHHHH
Confidence 24565655431 110 01111112257999999877765544
No 218
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=87.12 E-value=3.2 Score=44.24 Aligned_cols=112 Identities=25% Similarity=0.296 Sum_probs=72.6
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
+++++||++.....+...+...|..+..+.+..++...+.. .+++++++|....... +.. .....+...
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~d~vild~~~~~~~-~~~---~~~~i~~~~ 70 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS-------EMYALAVLDINMPGMD-GLE---VLQRLRKRG 70 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-------CCCCEEEEeCCCCCCc-HHH---HHHHHHhcC
Confidence 68999999998888888999999999888888888765532 2457788876554322 222 222222221
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
...|.+++ ...............|...++.||+....+...+.
T Consensus 71 -----~~~~ii~l-t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~ 113 (221)
T PRK15479 71 -----QTLPVLLL-TARSAVADRVKGLNVGADDYLPKPFELEELDARLR 113 (221)
T ss_pred -----CCCCEEEE-ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHH
Confidence 13454444 33333333445566788899999998877765543
No 219
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=86.93 E-value=2.6 Score=44.82 Aligned_cols=110 Identities=24% Similarity=0.299 Sum_probs=72.4
Q ss_pred EEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCC
Q 000920 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009 (1223)
Q Consensus 930 vLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1223)
++++||++.....+...++..|+.+..+.+..++...+.. ..++++++|....+.. +.. .+...+...
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvl~d~~~~~~~-g~~---~~~~l~~~~- 68 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK-------DDYDLIILDVMLPGMD-GWQ---ILQTLRRSG- 68 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-------CCCCEEEEeCCCCCCC-HHH---HHHHHHccC-
Confidence 4788999988888888899999999999999988776543 2467888887654422 222 223333211
Q ss_pred cccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1010 LEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1010 ~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|.++ +...............|...++.||+....+...+
T Consensus 69 ----~~~~iiv-ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i 110 (218)
T TIGR01387 69 ----KQTPVLF-LTARDSVADKVKGLDLGADDYLVKPFSFSELLARV 110 (218)
T ss_pred ----CCCcEEE-EEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHH
Confidence 1345444 44444444444555678889999999887766544
No 220
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=85.74 E-value=1.1 Score=57.60 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=16.4
Q ss_pred EEEEEecCCCCCHHhHhhhc
Q 000920 831 LVTVEDTGVGIPLEAQVRIF 850 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLF 850 (1223)
.++|.|||+||+++++.+-+
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 57999999999988765554
No 221
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=85.70 E-value=2.9 Score=53.74 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=66.6
Q ss_pred EEEEEecCh-hH-----HHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhh
Q 000920 1083 QILVVDDNM-VN-----RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEIN 1156 (1223)
Q Consensus 1083 rILVVDDn~-~n-----~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~ 1156 (1223)
+|+|||++. .+ .+.+...|++.|++|..+.+..+++.........++|+.|.+-. ..++++.||+..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---- 74 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQLN---- 74 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHhC----
Confidence 577787763 33 45567788999999999999999999887666788999995332 245777777642
Q ss_pred hhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEEC
Q 000920 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205 (1223)
Q Consensus 1157 ~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~K 1205 (1223)
..+||+++.......+.-...-.-.++|+--
T Consensus 75 ------------------~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (713)
T PRK15399 75 ------------------EYLPLYAFINTHSTMDVSVQDMRMALWFFEY 105 (713)
T ss_pred ------------------CCCCEEEEcCccccccCChhHhhhcceeeee
Confidence 2689999887544333222222334556553
No 222
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.45 E-value=1.8 Score=44.28 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEEEEccC
Q 000920 739 RQIITNLVGNSIKFTQDKGHIFVSVHLADD 768 (1223)
Q Consensus 739 ~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~ 768 (1223)
--+..-|+.||+||. ..|.|.|..++...
T Consensus 65 gYl~NELiENAVKfr-a~geIvieasl~s~ 93 (184)
T COG5381 65 GYLANELIENAVKFR-ATGEIVIEASLYSH 93 (184)
T ss_pred HHHHHHHHHhhhccc-CCCcEEEEEEeccc
Confidence 345677999999999 57899998887543
No 223
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=85.19 E-value=2.9 Score=50.94 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=72.7
Q ss_pred EEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccch----hhhHHHHHHHHHHH
Q 000920 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDK----EIGLVLHYMLKQQR 1005 (1223)
Q Consensus 930 vLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~----~~~~~~~~~~~~~~ 1005 (1223)
+|+|||++.....+...+ .|+.+..+.+..+|...+... .++++++|..+.+. ..+..+. +..+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~-------~~dlvllD~~mp~~~~~~~~g~~~l---~~i~ 68 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH-------EPAVVTLDLGLPPDADGASEGLAAL---QQIL 68 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC-------CCCEEEEeCCCCCCcCCCCCHHHHH---HHHH
Confidence 478999988888777777 688899999999998887532 45788888766531 2233322 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
... ...|.+++. ...+..........|...|+.||+....+...+..
T Consensus 69 ~~~-----~~~piI~lt-~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~ 115 (445)
T TIGR02915 69 AIA-----PDTKVIVIT-GNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDR 115 (445)
T ss_pred hhC-----CCCCEEEEe-cCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhh
Confidence 211 245655543 33334445556678888999999988777665543
No 224
>PRK13557 histidine kinase; Provisional
Probab=84.89 E-value=3.9 Score=50.31 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=75.9
Q ss_pred ccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 925 ~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
..+.+++++|+++.....+...++..|+.+..+.+..++...+... ..++++++|....+...+..+...+
T Consensus 413 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~------~~~d~vi~d~~~~~~~~~~~~~~~l--- 483 (540)
T PRK13557 413 GGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH------PEVDLLFTDLIMPGGMNGVMLAREA--- 483 (540)
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC------CCceEEEEeccCCCCCCHHHHHHHH---
Confidence 4567899999999999999999999999999999999888776421 2468888887765422233332222
Q ss_pred HhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
+... ...| ++++...............|...++.||+....+...+
T Consensus 484 ~~~~-----~~~~-ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l 529 (540)
T PRK13557 484 RRRQ-----PKIK-VLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRV 529 (540)
T ss_pred HHhC-----CCCc-EEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHH
Confidence 2211 1234 33333333333333344566778999999877766544
No 225
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=84.51 E-value=3.8 Score=44.93 Aligned_cols=111 Identities=20% Similarity=0.200 Sum_probs=70.3
Q ss_pred cEEEEecChhhhHHHHHHHHHhccc-e-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEM-A-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~-~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
++++++||++.....+...++.++. . +..+.+..+++..+.. ..++++++|.++.+. .|..+... .+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~-------~~~dlv~lDi~~~~~-~G~~~~~~---l~ 70 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR-------LKPDVVFLDIQMPRI-SGLELVGM---LD 70 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh-------cCCCEEEEeCCCCCC-CHHHHHHH---hc
Confidence 4789999999999999999998883 2 3457788888766542 246788898877642 34333222 11
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
. ...|.++.++.. .. ........|...++.||+....+..++..
T Consensus 71 ~-------~~~~~ii~vt~~-~~-~~~~a~~~~~~~yl~KP~~~~~l~~~l~~ 114 (238)
T PRK11697 71 P-------EHMPYIVFVTAF-DE-YAIKAFEEHAFDYLLKPIDPARLAKTLAR 114 (238)
T ss_pred c-------cCCCEEEEEecc-HH-HHHHHHhcCCcEEEECCCCHHHHHHHHHH
Confidence 1 123444444332 22 22333456777899999988777666543
No 226
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=84.38 E-value=5.1 Score=44.05 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=79.0
Q ss_pred EEEEecChhhhHHHHHHHHHhcc-ce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLE-MA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg-~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
+++++||.+..+..+...|+..+ +. +..+.++.+++..... .+++++++|..+++ ..|......+++ .
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-------~~pdvvl~Dl~mP~-~~G~e~~~~l~~--~ 71 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE-------LKPDVVLLDLSMPG-MDGLEALKQLRA--R 71 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh-------cCCCEEEEcCCCCC-CChHHHHHHHHH--H
Confidence 68999999999999999998776 55 4456668888876432 35688999987765 334444333331 1
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
.+ .. ++++++..............|...|+.|......+..+++.
T Consensus 72 ~p------~~-~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~ 116 (211)
T COG2197 72 GP------DI-KVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRA 116 (211)
T ss_pred CC------CC-cEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 11 12 45666666666677777889999999999888777766544
No 227
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=83.86 E-value=5.5 Score=41.75 Aligned_cols=109 Identities=21% Similarity=0.170 Sum_probs=69.0
Q ss_pred EEEEecChhhhHHHHHHHHHhc-cce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 929 RALVIDDKSIRAEVTRYHLQRL-EMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~l-g~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
++++|||++.....+...+... +.. +..+.+..++...+.. .+++++++|....+.. +..+ ++..+
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~-------~~~dlvi~d~~~~~~~-g~~~---~~~l~- 70 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG-------RGVQVCICDISMPDIS-GLEL---LSQLP- 70 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc-------CCCCEEEEeCCCCCCC-HHHH---HHHHc-
Confidence 6899999998888888888653 554 4567888888776542 2467888887654432 2222 22221
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
...| +++++..............|...++.||+....+...+.
T Consensus 71 -------~~~~-vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~ 113 (196)
T PRK10360 71 -------KGMA-TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVH 113 (196)
T ss_pred -------cCCC-EEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 1234 344443333344445566788899999998877766554
No 228
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=83.46 E-value=1.3e+02 Score=37.67 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000920 267 KILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVS 329 (1223)
Q Consensus 267 ~~l~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~d~~a~~lq~~~~~~~~~~~aL~~l~~ 329 (1223)
+++++.++..+++++++++.......+..++.+.+..+..+..+...++...+.+..++....
T Consensus 24 ~i~~~~~i~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (570)
T PRK15426 24 HVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDAQLQYNVDKLIFLRNGMR 86 (570)
T ss_pred eEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443434444455666667777777777777777788888888888888888777777766553
No 229
>PTZ00130 heat shock protein 90; Provisional
Probab=83.35 E-value=1.8 Score=56.05 Aligned_cols=48 Identities=19% Similarity=0.428 Sum_probs=28.3
Q ss_pred EEEEEecCCCCCHHhHhhhcCC--------Ccc---cCCCCCCCCCCcccHHHHHHHHH
Q 000920 831 LVTVEDTGVGIPLEAQVRIFTP--------FMQ---ADSSTSRTYGGTGIGLSISRCLV 878 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFep--------F~q---~d~stsr~~gGTGLGLsI~k~LV 878 (1223)
.++|+|||+||+.+++..-+-. |.+ .......-.|-.|+|.+=|-.+.
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 194 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVA 194 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeec
Confidence 4789999999999875543311 211 10111234567899987654443
No 230
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=82.85 E-value=1.3 Score=56.21 Aligned_cols=48 Identities=35% Similarity=0.569 Sum_probs=28.2
Q ss_pred EEEEEecCCCCCHHhHh--------hhcCCCccc---CCCCCC-CCCCcccHHHHHHHHH
Q 000920 831 LVTVEDTGVGIPLEAQV--------RIFTPFMQA---DSSTSR-TYGGTGIGLSISRCLV 878 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~--------rLFepF~q~---d~stsr-~~gGTGLGLsI~k~LV 878 (1223)
.|+|+|+|.|||.+..+ -+|...... +....+ ..|--|.||+.+..+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 48999999999976433 233322111 111111 2234689999888874
No 231
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=82.80 E-value=7.6 Score=38.65 Aligned_cols=110 Identities=20% Similarity=0.294 Sum_probs=79.9
Q ss_pred CCCcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHH--HHHhhhhhhh
Q 000920 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW--QIRHLENEIN 1156 (1223)
Q Consensus 1079 ~~~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr--~IR~~e~~~~ 1156 (1223)
+.||+.+.||-|.........+|...|.+|+.-..- ..+ +++.||+++..+-.+--.-...-+ -.|.+.
T Consensus 9 L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~l-p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~---- 79 (140)
T COG4999 9 LAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SAL-PPAHYDMMLLGVAVTFRENLTMQHERLAKALS---- 79 (140)
T ss_pred hccceeEEecCccHHHHHHHHHHhcCCceEEecccc----ccc-ChhhhceeeecccccccCCchHHHHHHHHHHh----
Confidence 578999999999999999999999999999886543 233 346799999998877655544321 122211
Q ss_pred hhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHH
Q 000920 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTA 1215 (1223)
Q Consensus 1157 ~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~ 1215 (1223)
..+--|+++-.. .....++..+-|+-+.|.||++...|...
T Consensus 80 -----------------mtd~vilalPs~-~qv~AeqLkQ~g~~~CllKPls~~rLlpt 120 (140)
T COG4999 80 -----------------MTDFVILALPSH-AQVNAEQLKQDGAGACLLKPLSSTRLLPT 120 (140)
T ss_pred -----------------hhcceEEecCcH-HHHhHHHHhhcchHhHhhCcchhhhhHHH
Confidence 112346665443 45567788899999999999999999873
No 232
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=82.27 E-value=4.2 Score=47.46 Aligned_cols=84 Identities=12% Similarity=0.004 Sum_probs=57.2
Q ss_pred CCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEec
Q 000920 1105 GAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184 (1223)
Q Consensus 1105 G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA 1184 (1223)
|.+++.+.+..++-.... .-.+|++|..| - ..-++..-+ .+..+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~-----~--~~~~~~~~p---------------------~~~~vv~v~~ 49 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA---RAPLVLVDADM-----A--EACAAAGLP---------------------RRRRVVLVGG 49 (322)
T ss_pred CCceEEccCchhhhhccc---cCCeEEECchh-----h--hHHHhccCC---------------------CCCCEEEEeC
Confidence 566777777666544432 35789998754 1 122232111 1233554444
Q ss_pred -cCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1185 -DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1185 -~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
..+.+....++++|+.||+.+|++..+|...+.+.
T Consensus 50 ~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 50 GEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred CCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 55788999999999999999999999999999876
No 233
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=81.94 E-value=4.9 Score=51.76 Aligned_cols=81 Identities=10% Similarity=0.124 Sum_probs=57.8
Q ss_pred EEEEEecC-hhH-----HHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhh
Q 000920 1083 QILVVDDN-MVN-----RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEIN 1156 (1223)
Q Consensus 1083 rILVVDDn-~~n-----~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~ 1156 (1223)
+||+|+++ ..+ .+.+...|++.|++|..+.+..+++.........++|+.|.+- -..++++.||+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---- 74 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK---YNLELCEEISKMN---- 74 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch---hhHHHHHHHHHhC----
Confidence 46666665 222 5567778899999999999999999988766678899998422 1234677777532
Q ss_pred hhhhcCCcccccccCCCCCcccEEEEeccCCH
Q 000920 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188 (1223)
Q Consensus 1157 ~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~ 1188 (1223)
..+||+++......
T Consensus 75 ------------------~~~Pv~~~~~~~~~ 88 (714)
T PRK15400 75 ------------------ENLPLYAFANTYST 88 (714)
T ss_pred ------------------CCCCEEEEcccccc
Confidence 26899998775433
No 234
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=81.81 E-value=8.6 Score=40.55 Aligned_cols=113 Identities=15% Similarity=0.240 Sum_probs=70.3
Q ss_pred cEEEEecChhhhHHHHHHHHHhc-cceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRL-EMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~l-g~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.+++++||++.........+... ++.+. .+.+..++...+.. ..++++++|....+.. +..+. ...+
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~~-g~~~~---~~l~ 72 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT-------RPVDLIIMDIDLPGTD-GFTFL---KRIK 72 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh-------cCCCEEEEeCCCCCCC-HHHHH---HHHH
Confidence 57999999999988888888876 46654 56777777765532 3467888887654432 33322 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
... ...|.++ +...............|...++.||+....+...+.
T Consensus 73 ~~~-----~~~~ii~-ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 118 (210)
T PRK09935 73 QIQ-----STVKVLF-LSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQ 118 (210)
T ss_pred HhC-----CCCcEEE-EECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 211 1344443 333333334445556788899999998777766543
No 235
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=81.67 E-value=1.5 Score=55.96 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.0
Q ss_pred EEEEEecCCCCCHHhHhhhcCCCcccC
Q 000920 831 LVTVEDTGVGIPLEAQVRIFTPFMQAD 857 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFepF~q~d 857 (1223)
.|.|.|+|+||++++++-.+.++.+.+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 489999999999999999999987543
No 236
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=81.55 E-value=5.6 Score=41.29 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=71.2
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++||++.....+...+...|+.+..+.+...+...+.. ..++++++|...... .+.... ...+..
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~d~ii~d~~~~~~-~~~~~~---~~l~~~ 72 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG-------LRFGCVVTDVRMPGI-DGIELL---RRLKAR 72 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc-------CCCCEEEEeCCCCCC-cHHHHH---HHHHhc
Confidence 578999999999999999999999999988888877766532 245778887654332 233222 222221
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
. ...|.+++. ..............|...++.||+....+...+
T Consensus 73 ~-----~~~~ii~l~-~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l 115 (202)
T PRK09390 73 G-----SPLPVIVMT-GHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAI 115 (202)
T ss_pred C-----CCCCEEEEE-CCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHH
Confidence 1 134554443 333333334445667778999998776665443
No 237
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=81.50 E-value=8.6 Score=35.94 Aligned_cols=114 Identities=25% Similarity=0.289 Sum_probs=68.1
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.++++++|+++.....+...++..|.. +..+.+...+...... ..++++++|...... .+... .+..+
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~di~l~d~~~~~~-~~~~~---~~~l~ 73 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-------GGFGFVISDWNMPNM-DGLEL---LKTIR 73 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc-------cCCCEEEEcCCCCCC-CHHHH---HHHHH
Confidence 468999999999999999999999984 6677787777665432 245677777554322 12222 22232
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccc
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC 1055 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~ 1055 (1223)
..... ...|.+++ ...............|...++.||+....+...
T Consensus 74 ~~~~~---~~~~~i~~-~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~ 119 (129)
T PRK10610 74 ADGAM---SALPVLMV-TAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 119 (129)
T ss_pred hCCCc---CCCcEEEE-ECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHH
Confidence 22110 13454443 333333333444567778899999876655443
No 238
>PRK09191 two-component response regulator; Provisional
Probab=80.69 E-value=7.9 Score=43.01 Aligned_cols=111 Identities=21% Similarity=0.239 Sum_probs=69.9
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
.+++++||++.....+...|+..|+.+. .+.+..++...+.. ..++++++|....+...+... ++..+.
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~-------~~~dlvi~d~~~~~~~~g~e~---l~~l~~ 207 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK-------TRPGLILADIQLADGSSGIDA---VNDILK 207 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc-------cCCCEEEEecCCCCCCCHHHH---HHHHHH
Confidence 4689999999999999999999999877 67788888777543 246888888876532223322 222222
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ..|.+++.... .. .......+...++.||+....+...+.
T Consensus 208 ~~------~~pii~ls~~~-~~--~~~~~~~~~~~~l~kP~~~~~l~~~i~ 249 (261)
T PRK09191 208 TF------DVPVIFITAFP-ER--LLTGERPEPAFLITKPFQPDTVKAAIS 249 (261)
T ss_pred hC------CCCEEEEeCCC-cH--HHHHHhcccCceEECCCCHHHHHHHHH
Confidence 11 34555543322 11 111222344568999998888776654
No 239
>PRK15029 arginine decarboxylase; Provisional
Probab=77.45 E-value=9.4 Score=49.73 Aligned_cols=87 Identities=11% Similarity=0.202 Sum_probs=60.7
Q ss_pred cEEEEecChhh--------hHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHH
Q 000920 928 LRALVIDDKSI--------RAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHY 999 (1223)
Q Consensus 928 ~rvLvVDd~~~--------~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~ 999 (1223)
+++|+|||+.. ..+.+...|+..|+.|..+.+.+.|...+... ..++++++|..+.+.........
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~------~~~DlVLLD~~LPd~dG~~~~~e 74 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN------EAIDCLMFSYQMEHPDEHQNVRQ 74 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc------CCCcEEEEECCCCCCccchhHHH
Confidence 36899999984 57888999999999999999999999887541 25789999977654432212223
Q ss_pred HHHHHHhcCCcccccCCCeEEEEecc
Q 000920 1000 MLKQQRRKGGLEISRNLPKIFLLATS 1025 (1223)
Q Consensus 1000 ~~~~~~~~~~~~~~~~~p~i~ll~~s 1025 (1223)
+++..+... .++|.+++.+..
T Consensus 75 ll~~IR~~~-----~~iPIIlLTar~ 95 (755)
T PRK15029 75 LIGKLHERQ-----QNVPVFLLGDRE 95 (755)
T ss_pred HHHHHHhhC-----CCCCEEEEEcCC
Confidence 445554322 257877765543
No 240
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=77.30 E-value=9.4 Score=37.45 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhCCCCCccEEEEeC-CCCCCCH-HHHHHHHHhhhhhhhhhhhcCCcc
Q 000920 1091 MVNRRVAEGALKKHGAIVTCVD---CGRAAVDKLTPPHNFDACFMDL-QMPEMDG-FQATWQIRHLENEINEQIASGESS 1165 (1223)
Q Consensus 1091 ~~n~~vl~~~L~~~G~~V~~a~---~G~eAl~~l~~~~~~DlIlmDi-~MP~MDG-~eatr~IR~~e~~~~~~i~~g~~~ 1165 (1223)
+.-...+..+|++.|++|...+ +.++..+.+.. .+||+|.+.. ..+.... .++++.+|+.
T Consensus 14 ~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~~-------------- 78 (121)
T PF02310_consen 14 PLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKER-------------- 78 (121)
T ss_dssp SHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHTT--------------
T ss_pred hHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHhc--------------
Confidence 4556889999999999998773 24555565553 5799999988 4333322 2333333321
Q ss_pred cccccCCCCCcccEEEEeccCCHHhHHHHHH--cCCCEEEECC
Q 000920 1166 AEMFGNVGLWHVPILAMTADVIQASNEQCMK--CGMDDYVSKP 1206 (1223)
Q Consensus 1166 ~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~--aG~ddyl~KP 1206 (1223)
..+++|+ +-+..-....+.+++ .|+|..+.-.
T Consensus 79 --------~p~~~iv-~GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 79 --------NPNIPIV-VGGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp --------CTTSEEE-EEESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred --------CCCCEEE-EECCchhcChHHHhccCcCcceecCCC
Confidence 1234444 455444455566665 7998877654
No 241
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=75.54 E-value=1.9 Score=54.58 Aligned_cols=50 Identities=32% Similarity=0.442 Sum_probs=29.8
Q ss_pred EEEEecCCCCCHHhHh-----------hhcCCCccc---CCCCCCCCCCcccHHHHHHHHHHHc
Q 000920 832 VTVEDTGVGIPLEAQV-----------RIFTPFMQA---DSSTSRTYGGTGIGLSISRCLVELM 881 (1223)
Q Consensus 832 IsV~DTGiGI~~e~~~-----------rLFepF~q~---d~stsr~~gGTGLGLsI~k~LVelm 881 (1223)
|+|+|+|.|||-+..+ -+|.-.... +.+-.-..|-.|.|.+.|..|-+.+
T Consensus 81 isV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 81 VTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 8999999999986542 123211110 1111122344799999988877655
No 242
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=74.83 E-value=56 Score=33.38 Aligned_cols=111 Identities=6% Similarity=-0.032 Sum_probs=72.2
Q ss_pred cChhHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcc
Q 000920 1089 DNMVNRRVAEGALKKHGAIVTCVD---CGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESS 1165 (1223)
Q Consensus 1089 Dn~~n~~vl~~~L~~~G~~V~~a~---~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~ 1165 (1223)
-...=..++..+|+..||+|.-.. +.++.++...+ +.+|+|.+-..|.. -.+.++.+.+.-++ .|
T Consensus 14 ~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e-~~adii~iSsl~~~--~~~~~~~~~~~L~~------~g--- 81 (132)
T TIGR00640 14 GHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE-ADVHVVGVSSLAGG--HLTLVPALRKELDK------LG--- 81 (132)
T ss_pred ccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCchhh--hHHHHHHHHHHHHh------cC---
Confidence 334445678889999999988754 46777777764 68999887655421 23334443321110 01
Q ss_pred cccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1166 AEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1166 ~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
..+++|+ +-+....++.++..++|+|+|+.-=-+..+....+.+-+
T Consensus 82 --------~~~i~vi-vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 82 --------RPDILVV-VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred --------CCCCEEE-EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 1134444 455556777888999999999998888888887776643
No 243
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=74.19 E-value=18 Score=37.59 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=69.0
Q ss_pred CcEEEEecChhhhHHHHHHHHHhcc-ce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLE-MA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg-~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
..+++++|+++.........+..++ +. +..+.+...+...... ..++++++|....+. .+... +...
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~dlvl~d~~~~~~-~~~~~---~~~l 71 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ-------LEPDIVILDLGLPGM-NGLDV---IPQL 71 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh-------cCCCEEEEeCCCCCC-CHHHH---HHHH
Confidence 4579999999999988888888764 44 3466777766655432 245778888655432 22222 2222
Q ss_pred HhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
+... ...|.++ ++..............|...++.||.....+...+.
T Consensus 72 ~~~~-----~~~~ii~-ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 118 (211)
T PRK15369 72 HQRW-----PAMNILV-LTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQ 118 (211)
T ss_pred HHHC-----CCCcEEE-EeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHH
Confidence 2211 1334444 444444444445566788899999998777665543
No 244
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=73.73 E-value=8.7 Score=51.23 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=33.5
Q ss_pred cccccCcEEEEecChhhhHHHHHHHHHhccceEEEecc
Q 000920 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANS 959 (1223)
Q Consensus 922 ~~~~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s 959 (1223)
...+.|.++|++||++..+.++..+|++||+.|..+.+
T Consensus 684 ~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~ 721 (894)
T PRK10618 684 EKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDE 721 (894)
T ss_pred cccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 34568899999999999999999999999999988764
No 245
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=73.29 E-value=11 Score=40.72 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=69.5
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
..+++|++||...++......|...|+.+- ++.+...+..... .-+.++|++|.+.+... ...+.... .
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~-------~~~pDvVildie~p~rd--~~e~~~~~-~ 73 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE-------RLQPDVVILDIEMPRRD--IIEALLLA-S 73 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH-------hcCCCEEEEecCCCCcc--HHHHHHHh-h
Confidence 456899999999999888888888777754 3333332222211 23567888887766544 11111111 0
Q ss_pred HhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
+ ...+.++.+....++.........|...|+.||+....+...+
T Consensus 74 ~--------~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L 117 (194)
T COG3707 74 E--------NVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPIL 117 (194)
T ss_pred c--------CCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHH
Confidence 0 0123344444444555666777899999999999988776544
No 246
>PRK13558 bacterio-opsin activator; Provisional
Probab=71.93 E-value=13 Score=47.71 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=70.4
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.++|+|||++.....+...+...|+.+..+.+..+++..+.. ..++++++|..+.+.. +.. .+...+..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~-------~~~Dlvl~d~~lp~~~-g~~---~l~~l~~~ 76 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA-------GEIDCVVADHEPDGFD-GLA---LLEAVRQT 76 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc-------cCCCEEEEeccCCCCc-HHH---HHHHHHhc
Confidence 589999999999998888899999999999999999876643 2467888887765432 332 23333321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccc
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR 1048 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~ 1048 (1223)
. ...|.+++. ...+..........|...|+.||..
T Consensus 77 ~-----~~~piI~lt-~~~~~~~~~~al~~Ga~dyl~k~~~ 111 (665)
T PRK13558 77 T-----AVPPVVVVP-TAGDEAVARRAVDADAAAYVPAVSD 111 (665)
T ss_pred C-----CCCCEEEEE-CCCCHHHHHHHHhcCcceEEeccch
Confidence 1 245655544 3333344445556788889999864
No 247
>PRK00208 thiG thiazole synthase; Reviewed
Probab=71.79 E-value=33 Score=38.76 Aligned_cols=101 Identities=21% Similarity=0.146 Sum_probs=64.6
Q ss_pred cChhHHHHHHHHHhhCCCEEE--EECCHHHHHHHhCCCCCccEEEEeCCCC---------CCCHHHHHHHHHhhhhhhhh
Q 000920 1089 DNMVNRRVAEGALKKHGAIVT--CVDCGRAAVDKLTPPHNFDACFMDLQMP---------EMDGFQATWQIRHLENEINE 1157 (1223)
Q Consensus 1089 Dn~~n~~vl~~~L~~~G~~V~--~a~~G~eAl~~l~~~~~~DlIlmDi~MP---------~MDG~eatr~IR~~e~~~~~ 1157 (1223)
|.....+..+ .|-+.|+.|. |++|-.+|-.... -.+|+| || +..-.+.++.|++.
T Consensus 108 d~~~tv~aa~-~L~~~Gf~vlpyc~~d~~~ak~l~~--~G~~~v-----mPlg~pIGsg~gi~~~~~i~~i~e~------ 173 (250)
T PRK00208 108 DPIETLKAAE-ILVKEGFVVLPYCTDDPVLAKRLEE--AGCAAV-----MPLGAPIGSGLGLLNPYNLRIIIEQ------ 173 (250)
T ss_pred CHHHHHHHHH-HHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEe-----CCCCcCCCCCCCCCCHHHHHHHHHh------
Confidence 3333444333 3445799877 6666666655433 357777 77 11115667777642
Q ss_pred hhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHh
Q 000920 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS-----KPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1158 ~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~-----KP~~~~~L~~~v~r~l 1220 (1223)
.++|||+=-+-...++..++++.|+|+++. |.=++..+..+....+
T Consensus 174 -----------------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av 224 (250)
T PRK00208 174 -----------------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAV 224 (250)
T ss_pred -----------------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHH
Confidence 157999888888999999999999999874 5445555555444433
No 248
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=71.42 E-value=15 Score=32.34 Aligned_cols=107 Identities=28% Similarity=0.396 Sum_probs=62.0
Q ss_pred EecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCCcc
Q 000920 932 VIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLE 1011 (1223)
Q Consensus 932 vVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1223)
++++++.....+...+..+|+.+..+.+...+...+.. ..++++++|....... +... ....+...
T Consensus 2 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ii~~~~~~~~~-~~~~---~~~l~~~~--- 67 (113)
T cd00156 2 IVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE-------EKPDLILLDIMMPGMD-GLEL---LRRIRKRG--- 67 (113)
T ss_pred eecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh-------CCCCEEEEecCCCCCc-hHHH---HHHHHHhC---
Confidence 57778878888888888889999888888877766533 2456777776544322 2222 22222211
Q ss_pred cccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccc
Q 000920 1012 ISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC 1055 (1223)
Q Consensus 1012 ~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~ 1055 (1223)
...|.+++. ..............|...++.||+....+...
T Consensus 68 --~~~~~i~~~-~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~ 108 (113)
T cd00156 68 --PDIPIIFLT-AHGDDEDAVEALKAGADDYLTKPFSPEELLAR 108 (113)
T ss_pred --CCCCEEEEE-ecccHHHHHHHHHcChhhHccCCCCHHHHHHH
Confidence 134444432 22222223334456777788899876665543
No 249
>PRK10403 transcriptional regulator NarP; Provisional
Probab=71.06 E-value=24 Score=37.04 Aligned_cols=113 Identities=22% Similarity=0.233 Sum_probs=68.0
Q ss_pred cEEEEecChhhhHHHHHHHHHh-ccceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQR-LEMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~-lg~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.+++++|+++.........+.. .++.+. .+.+..++...+.. ..++++++|....... +... +...+
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~dlvi~d~~~~~~~-~~~~---~~~l~ 75 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR-------LDPDVILLDLNMKGMS-GLDT---LNALR 75 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh-------cCCCEEEEecCCCCCc-HHHH---HHHHH
Confidence 5789999999888888888875 566664 57777777765532 2467888887654332 2222 22222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
... ...|. +++...............|...++.||+....+...+.
T Consensus 76 ~~~-----~~~~i-i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~ 121 (215)
T PRK10403 76 RDG-----VTAQI-IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIR 121 (215)
T ss_pred HhC-----CCCeE-EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHH
Confidence 211 12343 33333333333444456788899999988776655443
No 250
>PRK10651 transcriptional regulator NarL; Provisional
Probab=70.48 E-value=25 Score=37.06 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=69.5
Q ss_pred CcEEEEecChhhhHHHHHHHHHhc-cce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRL-EMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~l-g~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
..+++++|+++.....+...+... ++. +..+.+..++...+.. ..++++++|....+.. +... ....
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~dlvl~d~~l~~~~-~~~~---~~~l 74 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-------LDPDLILLDLNMPGMN-GLET---LDKL 74 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh-------CCCCEEEEeCCCCCCc-HHHH---HHHH
Confidence 357999999998888888888765 444 3457788888776543 2457788886654332 2222 2222
Q ss_pred HhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
+... ...|. +++...............|...++.||+....+...+.
T Consensus 75 ~~~~-----~~~~v-i~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~ 121 (216)
T PRK10651 75 REKS-----LSGRI-VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQ 121 (216)
T ss_pred HHhC-----CCCcE-EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 2211 12343 33433333334444556788899999998777765543
No 251
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=68.80 E-value=37 Score=38.28 Aligned_cols=102 Identities=22% Similarity=0.138 Sum_probs=65.7
Q ss_pred ecChhHHHHHHHHHhhCCCEEE--EECCHHHHHHHhCCCCCccEEEEeCCCC---------CCCHHHHHHHHHhhhhhhh
Q 000920 1088 DDNMVNRRVAEGALKKHGAIVT--CVDCGRAAVDKLTPPHNFDACFMDLQMP---------EMDGFQATWQIRHLENEIN 1156 (1223)
Q Consensus 1088 DDn~~n~~vl~~~L~~~G~~V~--~a~~G~eAl~~l~~~~~~DlIlmDi~MP---------~MDG~eatr~IR~~e~~~~ 1156 (1223)
.|+....+..+. |-+.|+.|. |++|-..|-.... -.+|+| || +..-.+.++.|++.
T Consensus 107 pd~~~tv~aa~~-L~~~Gf~vlpyc~dd~~~ar~l~~--~G~~~v-----mPlg~pIGsg~Gi~~~~~I~~I~e~----- 173 (248)
T cd04728 107 PDPIETLKAAEI-LVKEGFTVLPYCTDDPVLAKRLED--AGCAAV-----MPLGSPIGSGQGLLNPYNLRIIIER----- 173 (248)
T ss_pred cCHHHHHHHHHH-HHHCCCEEEEEeCCCHHHHHHHHH--cCCCEe-----CCCCcCCCCCCCCCCHHHHHHHHHh-----
Confidence 344444444444 445799877 6666666655433 357777 77 11116677777752
Q ss_pred hhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHh
Q 000920 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS-----KPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1157 ~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~-----KP~~~~~L~~~v~r~l 1220 (1223)
..+|||+=-+-...++..++++.|+|.++. |.=++..+..+....+
T Consensus 174 ------------------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av 224 (248)
T cd04728 174 ------------------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAV 224 (248)
T ss_pred ------------------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHH
Confidence 147999888888999999999999999874 5445555555544443
No 252
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=66.42 E-value=26 Score=41.53 Aligned_cols=104 Identities=20% Similarity=0.204 Sum_probs=69.9
Q ss_pred cEEEEecChhhhHHHHHHHHHhcc--ceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLE--MAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg--~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.|||+|||....+.+.+..|..-+ ..+-.+.+..+|...+... .++.+.+|.++........+...++.
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~-------~PDVi~ld~emp~mdgl~~l~~im~~-- 72 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKL-------KPDVITLDVEMPVMDGLEALRKIMRL-- 72 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhc-------CCCEEEEecccccccHHHHHHHHhcC--
Confidence 489999999999999999999988 5667889999999887654 34778888877654433222211111
Q ss_pred hcCCcccccCCCeEEEEeccCC-ccchhhhhcCCceeeeccccc
Q 000920 1006 RKGGLEISRNLPKIFLLATSIS-ETDRDELKSDGIVTLLTKPLR 1048 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~-~~~~~~~~~~g~~~~l~KPl~ 1048 (1223)
...|.+++.+.... .....+....|.++++.||-.
T Consensus 73 --------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 73 --------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred --------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 25666655442211 222334456788899999974
No 253
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=64.77 E-value=4 Score=52.96 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=24.3
Q ss_pred CceEEeC--H-HHHHHHHHHHHHHHHhccCC--CCeEEEEEE
Q 000920 728 PEVVIGD--P-GRFRQIITNLVGNSIKFTQD--KGHIFVSVH 764 (1223)
Q Consensus 728 p~~v~gD--~-~rL~QIL~NLLsNAIKfT~~--~G~I~V~v~ 764 (1223)
|.+.+|+ + .-|.+++.-+|.|||.-.-. ...|.|.++
T Consensus 25 PgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~ 66 (756)
T PRK14939 25 PGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIH 66 (756)
T ss_pred CCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEc
Confidence 5555554 3 45899999999999983222 246666654
No 254
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=64.21 E-value=53 Score=35.79 Aligned_cols=101 Identities=15% Similarity=0.095 Sum_probs=64.3
Q ss_pred cEEEEE----ecChhHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhCCCCCccEEEEeCCCCCCC--HHHHHHHHHhhh
Q 000920 1082 KQILVV----DDNMVNRRVAEGALKKHGAIVTCVD---CGRAAVDKLTPPHNFDACFMDLQMPEMD--GFQATWQIRHLE 1152 (1223)
Q Consensus 1082 ~rILVV----DDn~~n~~vl~~~L~~~G~~V~~a~---~G~eAl~~l~~~~~~DlIlmDi~MP~MD--G~eatr~IR~~e 1152 (1223)
.+||+. |-...=..++..+|+..||+|...- ..++.++.+. ..+||+|-+-..|+..- --++.+.+|+..
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~-~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK-EHKPDILGLSALMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHCC
Confidence 478777 6666667888999999999997532 3556666665 47899999888776541 123334444321
Q ss_pred hhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECC
Q 000920 1153 NEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKP 1206 (1223)
Q Consensus 1153 ~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP 1206 (1223)
...++||++=-+-...+ -+-..|+|.|-.=.
T Consensus 162 --------------------~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~da 192 (201)
T cd02070 162 --------------------LRDKVKVMVGGAPVNQE---FADEIGADGYAEDA 192 (201)
T ss_pred --------------------CCcCCeEEEECCcCCHH---HHHHcCCcEEECCH
Confidence 01245666554444432 56677999997543
No 255
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=63.61 E-value=4.4 Score=51.82 Aligned_cols=51 Identities=33% Similarity=0.559 Sum_probs=29.2
Q ss_pred EEEEEecCCCCCHHhHh--------hhcCCCcc---cCCCCCCCCCC-cccHHHHHHHHHHHc
Q 000920 831 LVTVEDTGVGIPLEAQV--------RIFTPFMQ---ADSSTSRTYGG-TGIGLSISRCLVELM 881 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~--------rLFepF~q---~d~stsr~~gG-TGLGLsI~k~LVelm 881 (1223)
.|+|.|+|.|||.+..+ -+|.-... .|...-+..|| .|.|++.+..|-+.+
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~~ 129 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSWL 129 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeeceE
Confidence 38999999999975432 22322111 11111122233 689999988877643
No 256
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=62.64 E-value=1.2e+02 Score=31.26 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCccccc
Q 000920 1092 VNRRVAEGALKKHGAIVTCV---DCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEM 1168 (1223)
Q Consensus 1092 ~n~~vl~~~L~~~G~~V~~a---~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~ 1168 (1223)
.-..++..+|+..||+|... ...++.++... ++.+|+|-+-..|-. ..+..+++.+.-++ .|
T Consensus 16 iGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~-~~~adiVglS~l~~~--~~~~~~~~~~~l~~------~g------ 80 (134)
T TIGR01501 16 VGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAI-ETKADAILVSSLYGH--GEIDCKGLRQKCDE------AG------ 80 (134)
T ss_pred HhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccc--CHHHHHHHHHHHHH------CC------
Confidence 44567888999999999874 34677777765 468999988776632 22223332211100 01
Q ss_pred ccCCCCCcccEEEEeccC--CHHh----HHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1169 FGNVGLWHVPILAMTADV--IQAS----NEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1169 ~~~~~~~~iPIIalTA~~--~~~~----~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
...++ |++-+.. ..++ ..+..+.|+|....-.-.++++...|++.|.
T Consensus 81 -----l~~~~-vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 81 -----LEGIL-LYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred -----CCCCE-EEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 12334 5555531 2222 4568899999999988899999999888764
No 257
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=61.94 E-value=40 Score=37.26 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=66.2
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
..++++|||.|.....++..|+ -++. +..+.+..++...+ .+++++++|..+.+.. |.... ....+
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~---------~~~DvvllDi~~p~~~-G~~~~--~~~i~ 76 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDI---------SSGSIILLDMMEADKK-LIHYW--QDTLS 76 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccC---------CCCCEEEEECCCCCcc-HHHHH--HHHHH
Confidence 4469999999999999999997 3343 34556776666542 1378999999876533 33221 11122
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhc-CCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKS-DGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~-~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
... ... +++++..... ........ .|...|+.|+.....|..++..
T Consensus 77 ~~~-----p~~-~vvvlt~~~~-~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~ 123 (216)
T PRK10100 77 RKN-----NNI-KILLLNTPED-YPYREIENWPHINGVFYAMEDQERVVNGLQG 123 (216)
T ss_pred HhC-----CCC-cEEEEECCch-hHHHHHHHhcCCeEEEECCCCHHHHHHHHHH
Confidence 111 122 3444443322 22222222 5888999999888877766543
No 258
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=61.39 E-value=74 Score=30.81 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=60.1
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCH-HHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCG-RAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G-~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
.++.+||.|+..... +...|+.+...+-. .+.++.+. -...+.++....-. ..-+.++..+|++.+
T Consensus 22 ~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~-i~~a~~vv~~~~~d-~~n~~~~~~~r~~~~------- 88 (116)
T PF02254_consen 22 IDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAG-IEKADAVVILTDDD-EENLLIALLARELNP------- 88 (116)
T ss_dssp SEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTT-GGCESEEEEESSSH-HHHHHHHHHHHHHTT-------
T ss_pred CEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcC-ccccCEEEEccCCH-HHHHHHHHHHHHHCC-------
Confidence 479999999977543 45567877775544 34555554 35688888876533 344667777776542
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
..+||+... +.+......++|+|..+.
T Consensus 89 ---------------~~~ii~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 89 ---------------DIRIIARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp ---------------TSEEEEEES--SHHHHHHHHHTT-SEEEE
T ss_pred ---------------CCeEEEEEC--CHHHHHHHHHCCcCEEEC
Confidence 357777664 455667778899998764
No 259
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=61.26 E-value=11 Score=47.45 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=27.5
Q ss_pred EEEEEecCCCCCHHhHhhhcC--------CCccc---CCCCCCCCCCcccHHHHHHHHH
Q 000920 831 LVTVEDTGVGIPLEAQVRIFT--------PFMQA---DSSTSRTYGGTGIGLSISRCLV 878 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFe--------pF~q~---d~stsr~~gGTGLGLsI~k~LV 878 (1223)
.++|+||||||..++.....- .|.+. +...+.--|-.|+|++=|--++
T Consensus 75 TLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 133 (623)
T COG0326 75 TLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVA 133 (623)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeee
Confidence 588999999999886443221 12111 1111223466789987555443
No 260
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=60.48 E-value=51 Score=42.98 Aligned_cols=110 Identities=6% Similarity=-0.045 Sum_probs=73.7
Q ss_pred cChhHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhhhhhhhhhhhcCC
Q 000920 1089 DNMVNRRVAEGALKKHGAIVTCV---DCGRAAVDKLTPPHNFDACFMDLQMPEM--DGFQATWQIRHLENEINEQIASGE 1163 (1223)
Q Consensus 1089 Dn~~n~~vl~~~L~~~G~~V~~a---~~G~eAl~~l~~~~~~DlIlmDi~MP~M--DG~eatr~IR~~e~~~~~~i~~g~ 1163 (1223)
....-..++..+|+..||+|+.- .+.+++++... ....|+|.+-..+... ..-++++.+|+..
T Consensus 594 ~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~-~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G----------- 661 (714)
T PRK09426 594 GHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAV-ENDVHVVGVSSLAAGHKTLVPALIEALKKLG----------- 661 (714)
T ss_pred chhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHH-HcCCCEEEEeccchhhHHHHHHHHHHHHhcC-----------
Confidence 34445567888999999999643 24667777765 3678988776554332 2234555555421
Q ss_pred cccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1164 ~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+++|+ +.+....++.+...++|+|+|+.-=.+..+....+.+.|.
T Consensus 662 ----------~~~v~vl-~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 662 ----------REDIMVV-VGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred ----------CCCcEEE-EeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 1133333 5555455666788999999999998999999888888774
No 261
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=60.17 E-value=1.3e+02 Score=32.50 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=60.1
Q ss_pred hCCCEEEE-ECCHHHHHHHhCCCCCccEEEEeCCCCCC--------CHHHHHHHHHhhhhhhhhhhhcCCcccccccCCC
Q 000920 1103 KHGAIVTC-VDCGRAAVDKLTPPHNFDACFMDLQMPEM--------DGFQATWQIRHLENEINEQIASGESSAEMFGNVG 1173 (1223)
Q Consensus 1103 ~~G~~V~~-a~~G~eAl~~l~~~~~~DlIlmDi~MP~M--------DG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~ 1173 (1223)
..|..+-. +.+-.++.+... ...|.|...--.|.. .|++.++++++.-
T Consensus 102 ~~~~~~g~~~~t~~e~~~a~~--~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------- 158 (212)
T PRK00043 102 GPDAIIGLSTHTLEEAAAALA--AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV--------------------- 158 (212)
T ss_pred CCCCEEEEeCCCHHHHHHHhH--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc---------------------
Confidence 34443333 344566666543 468999876555543 4678888887531
Q ss_pred CCcccEEEEeccCCHHhHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHh
Q 000920 1174 LWHVPILAMTADVIQASNEQCMKCGMDDYVS-----KPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1174 ~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~-----KP~~~~~L~~~v~r~l 1220 (1223)
.++||++..+- ..++..+++++|+|++.. +.-++.+....+.+.+
T Consensus 159 -~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~ 208 (212)
T PRK00043 159 -GDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAF 208 (212)
T ss_pred -CCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHH
Confidence 13798887655 678899999999999985 5556655555555443
No 262
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=57.18 E-value=1.6e+02 Score=30.01 Aligned_cols=103 Identities=12% Similarity=0.119 Sum_probs=67.0
Q ss_pred hHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhCCCCCccEEEEeCCCCC-CCHH-HHHHHHHhhhhhhhhhhhcCCccc
Q 000920 1092 VNRRVAEGALKKHGAIVTCV---DCGRAAVDKLTPPHNFDACFMDLQMPE-MDGF-QATWQIRHLENEINEQIASGESSA 1166 (1223)
Q Consensus 1092 ~n~~vl~~~L~~~G~~V~~a---~~G~eAl~~l~~~~~~DlIlmDi~MP~-MDG~-eatr~IR~~e~~~~~~i~~g~~~~ 1166 (1223)
.-.+++..+|+..||+|.-. ...++.++... ++++|+|-+-..|.. |..+ ++.+.+|+.
T Consensus 14 iGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~-~~~adiVglS~L~t~~~~~~~~~~~~l~~~--------------- 77 (128)
T cd02072 14 VGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAI-ETDADAILVSSLYGHGEIDCKGLREKCDEA--------------- 77 (128)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccCCHHHHHHHHHHHHHC---------------
Confidence 44567888999999999763 34667777665 468999988776643 2222 233444431
Q ss_pred ccccCCCCCcccEEEEeccC--C----HHhHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 000920 1167 EMFGNVGLWHVPILAMTADV--I----QASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217 (1223)
Q Consensus 1167 ~~~~~~~~~~iPIIalTA~~--~----~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1217 (1223)
...++||+ +-+.. . .++..+..+.|+|......-+++++...|+
T Consensus 78 ------gl~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 78 ------GLKDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred ------CCCCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 12245554 44432 1 445577889999999998888888877665
No 263
>PLN03237 DNA topoisomerase 2; Provisional
Probab=56.63 E-value=15 Score=50.65 Aligned_cols=52 Identities=27% Similarity=0.544 Sum_probs=31.1
Q ss_pred EEEEEecCCCCCHHhHh--------hhcCCCccc---CCCCCCCCCC-cccHHHHHHHHHHHcC
Q 000920 831 LVTVEDTGVGIPLEAQV--------RIFTPFMQA---DSSTSRTYGG-TGIGLSISRCLVELMG 882 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~--------rLFepF~q~---d~stsr~~gG-TGLGLsI~k~LVelmg 882 (1223)
.|+|.|+|.|||-+..+ -||.-.... |....+..|| .|.|.+.|.-+-+.+-
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~ 175 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFV 175 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeE
Confidence 38999999999976433 234333221 1111122233 5999998888876553
No 264
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=51.65 E-value=66 Score=35.15 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=39.2
Q ss_pred EEEEecChhhhHHHHHHHHHhccc---eEEEeccHHHHhhhhcccCCCCCCCcceEEEeccc
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEM---AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~---~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~ 987 (1223)
.++++||.+..+..++..|...+. .+..+.+..+++..+... +++++++|.+
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~-------~pDlvLlDl~ 56 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL-------RPSVVFINED 56 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc-------CCCEEEEeCc
Confidence 589999999999999999986553 345678888888765332 3588999943
No 265
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=51.44 E-value=1.3e+02 Score=33.15 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=54.4
Q ss_pred HHHHHhh-CCCEEE-EECCHHHHHHHhCCCCCccEEEEeCC-------CCCCCHHHHHHHHHhhhhhhhhhhhcCCcccc
Q 000920 1097 AEGALKK-HGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQ-------MPEMDGFQATWQIRHLENEINEQIASGESSAE 1167 (1223)
Q Consensus 1097 l~~~L~~-~G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~-------MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~ 1167 (1223)
+....++ .|..+. .+.+.+++..... ..+|+|..... .+.-.+++++++||+.
T Consensus 110 ~i~~~~~~~~i~vi~~v~t~ee~~~a~~--~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~---------------- 171 (221)
T PRK01130 110 LVKRIKEYPGQLLMADCSTLEEGLAAQK--LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA---------------- 171 (221)
T ss_pred HHHHHHhCCCCeEEEeCCCHHHHHHHHH--cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh----------------
Confidence 3344455 566544 3556777765443 45888754311 1223346777777752
Q ss_pred cccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1168 MFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1168 ~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
.++||++..+-.+.++..++++.|+|.++.
T Consensus 172 -------~~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 172 -------VGCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred -------CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 147999988888899999999999998865
No 266
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=50.11 E-value=4.2e+02 Score=29.88 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 571 WTAINASIGVVVITLLVGHIFHAAI 595 (1223)
Q Consensus 571 w~~~~~~i~~lvi~llv~~i~~~~i 595 (1223)
|+.++..+.++++.+++.++++..+
T Consensus 6 ~t~~~qiInFlil~~lL~kfl~kPi 30 (246)
T TIGR03321 6 FTVIAQLINFLILVWLLKRFLYRPI 30 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4444444555555555555555444
No 267
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=49.72 E-value=1.1e+02 Score=33.90 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=68.8
Q ss_pred cEEEEE----ecChhHHHHHHHHHhhCCCEEEEECC---HHHHHHHhCCCCCccEEEEeCCCCCC-CH-HHHHHHHHhhh
Q 000920 1082 KQILVV----DDNMVNRRVAEGALKKHGAIVTCVDC---GRAAVDKLTPPHNFDACFMDLQMPEM-DG-FQATWQIRHLE 1152 (1223)
Q Consensus 1082 ~rILVV----DDn~~n~~vl~~~L~~~G~~V~~a~~---G~eAl~~l~~~~~~DlIlmDi~MP~M-DG-~eatr~IR~~e 1152 (1223)
.+|++. |....=..++..+|+..||+|...-. .++.++.+. +.++|+|.+-..|+.. .. -++++++|+.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~-~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~- 166 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAK-EHKADIIGLSGLLVPSLDEMVEVAEEMNRR- 166 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEccchhccHHHHHHHHHHHHhc-
Confidence 478877 77777788889999999999987543 556666665 4789999998888642 11 1223333321
Q ss_pred hhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHH---HHHcCCCEEEECCCCHHHH
Q 000920 1153 NEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ---CMKCGMDDYVSKPFEDEQL 1212 (1223)
Q Consensus 1153 ~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~---~l~aG~ddyl~KP~~~~~L 1212 (1223)
..++||++--+-..++..++ +-..|+|.|-.=..+.-++
T Consensus 167 ---------------------~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~~~v~~ 208 (213)
T cd02069 167 ---------------------GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDASRALGV 208 (213)
T ss_pred ---------------------CCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHHHHHHH
Confidence 11567766555555554443 3457999997654444333
No 268
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=48.39 E-value=45 Score=36.70 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=42.1
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhCCC---CCccEEEEeCC
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGA--IVT-CVDCGRAAVDKLTPP---HNFDACFMDLQ 1135 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~--~V~-~a~~G~eAl~~l~~~---~~~DlIlmDi~ 1135 (1223)
+-+|.-+|=|+.+..+++.++++.|+ .|. ...++.+.+..+... ..||+||+|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 34899999999999999999999986 233 345677777766322 36999999984
No 269
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.90 E-value=3.8e+02 Score=28.67 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=75.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHH
Q 000920 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNV 704 (1223)
Q Consensus 625 FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~v 704 (1223)
+.+.+-|||=.|..+|..-+++|.+..-+++ .++.|..|+.... +.|.|+|+-=|.---.-..+|-.+.=.-.
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~addD---Am~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeaek~A 90 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGADDD---AMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAEKAA 90 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCccHH---HHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHHHHH
Confidence 3466899999999999999999987766644 4455666665443 45778888655443333455555532222
Q ss_pred HHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEE
Q 000920 705 LSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH 764 (1223)
Q Consensus 705 l~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~ 764 (1223)
.+.| +.+| -++..+... .+ -...+. ..+.||+-=|--..|.||.+.+++.
T Consensus 91 ~~~~---a~ek-pe~~W~g~r----~~-~~Kn~v-kllLNl~lia~~aiPrGG~~~vtle 140 (214)
T COG5385 91 QDFF---ANEK-PELTWNGPR----AI-LPKNRV-KLLLNLFLIAYGAIPRGGSLVVTLE 140 (214)
T ss_pred HHHH---hccC-CcccccCCh----hh-cCcchH-HHHHHHHHHHcccCCCCCeeEEEee
Confidence 2222 2222 444443321 11 123333 4578998888888899998887764
No 270
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=47.36 E-value=25 Score=37.95 Aligned_cols=66 Identities=21% Similarity=0.246 Sum_probs=44.1
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCE---EEEECCHHHHHHHh-CCCCCccEEEEeCCCCCCCHH---HHHHHHH
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAI---VTCVDCGRAAVDKL-TPPHNFDACFMDLQMPEMDGF---QATWQIR 1149 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~---V~~a~~G~eAl~~l-~~~~~~DlIlmDi~MP~MDG~---eatr~IR 1149 (1223)
+++..||-|+.....++.-+++.|.. .....|...++..+ .....||+||+|- |-..+. +++..|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHH
Confidence 58999999999999999999988843 34456677777655 2346899999994 555443 3444443
No 271
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.95 E-value=1.7e+02 Score=27.97 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=44.7
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEE------CCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCV------DCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLE 1152 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a------~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e 1152 (1223)
+||||-....+...++..++++|+..... ......++... ...|+||+=. +.-+-.++..+++.-
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t---~~vsH~~~~~vk~~a 71 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFT---DYVSHNAMWKVKKAA 71 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEe---CCcChHHHHHHHHHH
Confidence 48999998888999999999999998888 22222244332 3468886633 234566777777643
No 272
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=45.65 E-value=62 Score=36.03 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=41.0
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCE--EEEEC--CHHHHHHHhCCCCCccEEEEeCCC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAI--VTCVD--CGRAAVDKLTPPHNFDACFMDLQM 1136 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~--V~~a~--~G~eAl~~l~~~~~~DlIlmDi~M 1136 (1223)
+|.-+|=|+...+.++..+++.|.. +.... ++.+.++.. ....||+||+|..=
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-~~~~fDliFIDadK 142 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-LDGSFDLVFIDADK 142 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-cCCCccEEEEeCCh
Confidence 8999999999999999999999963 44444 455555542 24689999999863
No 273
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=44.86 E-value=3.3e+02 Score=28.47 Aligned_cols=111 Identities=13% Similarity=0.065 Sum_probs=74.3
Q ss_pred ecChhHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCc
Q 000920 1088 DDNMVNRRVAEGALKKHGAIVTC---VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGES 1164 (1223)
Q Consensus 1088 DDn~~n~~vl~~~L~~~G~~V~~---a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~ 1164 (1223)
|-...=.+++...|+..||+|+. ..+.+|+++... ++..|+|.+-.. .-...+++..+++.-++. |
T Consensus 23 DgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~-~~dv~vIgvSsl--~g~h~~l~~~lve~lre~------G-- 91 (143)
T COG2185 23 DGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAV-EEDVDVIGVSSL--DGGHLTLVPGLVEALREA------G-- 91 (143)
T ss_pred cccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHH-hcCCCEEEEEec--cchHHHHHHHHHHHHHHh------C--
Confidence 55556678999999999999987 557889888774 367888866432 223355666665432211 2
Q ss_pred ccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1165 SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1165 ~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
..++. +.+-+.-..++..+..+.|+|.++.==.+..+....|..-
T Consensus 92 ---------~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~ 136 (143)
T COG2185 92 ---------VEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTR 136 (143)
T ss_pred ---------CcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHH
Confidence 12333 3555666677888888899999998667777666555543
No 274
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=44.47 E-value=75 Score=31.26 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=30.0
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHH
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ 961 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~ 961 (1223)
|+|||||+..|+.-+...|+-+|..+..+++.+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~ 33 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSD 33 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHH
Confidence 589999999999999999999999999887644
No 275
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=44.44 E-value=18 Score=49.88 Aligned_cols=51 Identities=25% Similarity=0.543 Sum_probs=30.4
Q ss_pred EEEEEecCCCCCHHhHh--------hhcCCCccc---CCCCCCCCCC-cccHHHHHHHHHHHc
Q 000920 831 LVTVEDTGVGIPLEAQV--------RIFTPFMQA---DSSTSRTYGG-TGIGLSISRCLVELM 881 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~--------rLFepF~q~---d~stsr~~gG-TGLGLsI~k~LVelm 881 (1223)
.|+|.|+|.|||-+..+ -||.-.... |....+..|| .|.|.+.|.-+-+.+
T Consensus 95 ~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 95 EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 38999999999976433 234333221 1111122234 599999888876654
No 276
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=43.92 E-value=2.4e+02 Score=33.36 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=61.3
Q ss_pred EEEEEe----cChhHHHHHHHHHhhCC-CEEEE--ECCHHHHHHHhCCCCCccEEEEeC-------C---CC-CCC--HH
Q 000920 1083 QILVVD----DNMVNRRVAEGALKKHG-AIVTC--VDCGRAAVDKLTPPHNFDACFMDL-------Q---MP-EMD--GF 1142 (1223)
Q Consensus 1083 rILVVD----Dn~~n~~vl~~~L~~~G-~~V~~--a~~G~eAl~~l~~~~~~DlIlmDi-------~---MP-~MD--G~ 1142 (1223)
.++++| ++...++.++.+=+++. ..|.. +.+.++|..... ..+|+|..-. + .. ... ++
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 477775 33444455555444443 44444 667888877664 3588865331 1 10 112 45
Q ss_pred HHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1143 eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
.+++.+++. .++||||-.+-....+..+|+.+|||.+..
T Consensus 191 ~ai~~~~~~-----------------------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 191 AALRWCAKA-----------------------ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred HHHHHHHHH-----------------------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 556666531 148999999999999999999999998764
No 277
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.60 E-value=1.9e+02 Score=29.48 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000920 573 AINASIGVVVITLLVGHIFHAAINRIAQV-ENDYHEMMELKARAE 616 (1223)
Q Consensus 573 ~~~~~i~~lvi~llv~~i~~~~i~ri~~v-e~~~~el~e~k~~ae 616 (1223)
.|.+.++.+|+.+++|+++.+..++-.+- .....+|+..+.+.+
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld 51 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLD 51 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHH
Confidence 34455566777777888776655442221 122334444444443
No 278
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=41.80 E-value=2.4e+02 Score=35.71 Aligned_cols=108 Identities=7% Similarity=0.056 Sum_probs=63.9
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHH-HHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR-AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~-eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
+..+.++|.|+...+.+ ++.|+.+...+-.. ++++... -++.|.++.-..=... -..++..+|+..
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a~-i~~a~~viv~~~~~~~-~~~iv~~~~~~~------- 506 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLAH-LDCARWLLLTIPNGYE-AGEIVASAREKR------- 506 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhcC-ccccCEEEEEcCChHH-HHHHHHHHHHHC-------
Confidence 44689999998765443 45788888776443 4555443 2468877765431111 112444555432
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.+.+||+-+.+ .+..+...++|+|..+ ....++...+.+.+.
T Consensus 507 ---------------~~~~iiar~~~--~~~~~~l~~~Gad~vv---~p~~~~a~~i~~~l~ 548 (558)
T PRK10669 507 ---------------PDIEIIARAHY--DDEVAYITERGANQVV---MGEREIARTMLELLE 548 (558)
T ss_pred ---------------CCCeEEEEECC--HHHHHHHHHcCCCEEE---ChHHHHHHHHHHHhc
Confidence 24688887653 5666677889999776 234444555555543
No 279
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=41.79 E-value=5.2e+02 Score=28.49 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 000920 569 VPWTAINASIGVVVITLLVGHIFHAAIN-----RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPM 637 (1223)
Q Consensus 569 ~~w~~~~~~i~~lvi~llv~~i~~~~i~-----ri~~ve~~~~el~e~k~~ae~a~~aKs~FLA~vSHELRTPL 637 (1223)
-+|..++..+.++++.+++.++++..+. |-..++++..+..+.++++++....-.+-++....|-+.=+
T Consensus 47 ~~~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii 120 (205)
T PRK06231 47 NFWVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEII 120 (205)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555566666655443 33344444555555554444433333333444444443333
No 280
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=41.70 E-value=2.7e+02 Score=30.59 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhhCC-CEE-EEECCHHHHHHHhCCCCCccEEEEeCC-------CCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1092 VNRRVAEGALKKHG-AIV-TCVDCGRAAVDKLTPPHNFDACFMDLQ-------MPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1092 ~n~~vl~~~L~~~G-~~V-~~a~~G~eAl~~l~~~~~~DlIlmDi~-------MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
...++++. +++.| ..+ ..+.+.+++..... ..+|.|..-.. .+...+++.+++||+.
T Consensus 110 ~~~~~i~~-~~~~g~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~----------- 175 (219)
T cd04729 110 TLAELIKR-IHEEYNCLLMADISTLEEALNAAK--LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA----------- 175 (219)
T ss_pred CHHHHHHH-HHHHhCCeEEEECCCHHHHHHHHH--cCCCEEEccCccccccccCCCCCCHHHHHHHHHh-----------
Confidence 33444433 34455 443 34566777766554 35888743210 1222346778887742
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEEC
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~K 1205 (1223)
-++||++..+-.+.++..++++.|+|..+.-
T Consensus 176 ------------~~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 176 ------------LGIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred ------------cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 1479999888778999999999999998753
No 281
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=41.54 E-value=47 Score=42.20 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=31.9
Q ss_pred EEEEEEEecCCCCCHHhHhhhcCCCcccC------CCCCCCCCCcccHHH
Q 000920 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQAD------SSTSRTYGGTGIGLS 872 (1223)
Q Consensus 829 ~l~IsV~DTGiGI~~e~~~rLFepF~q~d------~stsr~~gGTGLGLs 872 (1223)
.+.+.|.|+|.|+..+++..+=++|+..+ -...+.||=-|=.|+
T Consensus 49 t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeALa 98 (1142)
T KOG1977|consen 49 TFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEALA 98 (1142)
T ss_pred eeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhhhh
Confidence 46789999999999999999988887532 233456665555444
No 282
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=40.45 E-value=1.6e+02 Score=31.93 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=36.1
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEE
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlm 1132 (1223)
+|+|+|=.--|...+...|++.|+++....+..+ + ..||.|++
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~---~~~d~iii 44 (200)
T PRK13143 2 MIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I---LDADGIVL 44 (200)
T ss_pred eEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H---ccCCEEEE
Confidence 7999999999999999999999999999876432 2 25898876
No 283
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=40.42 E-value=82 Score=32.58 Aligned_cols=54 Identities=28% Similarity=0.361 Sum_probs=45.0
Q ss_pred CCCcEEEEEecChhHHHHHHHHHhhCCCEEEEEC----CHHHHHHHhCCCCCccEEEEeCCCCC
Q 000920 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVD----CGRAAVDKLTPPHNFDACFMDLQMPE 1138 (1223)
Q Consensus 1079 ~~~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~----~G~eAl~~l~~~~~~DlIlmDi~MP~ 1138 (1223)
+.|++|+|+..+....+-+..+|.+.|+.|+.+. +-+++++ .-|+|+.-.--|.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~------~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH------DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh------hCCEEEEecCCCC
Confidence 6789999999999999999999999999999998 5555432 3688888776663
No 284
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=40.18 E-value=2.2e+02 Score=31.36 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=46.3
Q ss_pred HHHHHHhCCCCCcc-EEEEeCCCCCC-CH--HHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHh
Q 000920 1115 RAAVDKLTPPHNFD-ACFMDLQMPEM-DG--FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190 (1223)
Q Consensus 1115 ~eAl~~l~~~~~~D-lIlmDi~MP~M-DG--~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~ 1190 (1223)
.+.++.+.. ...| ++++|+.--++ .| +++++++++. .++|||+=.+-.+.++
T Consensus 148 ~~~~~~~~~-~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvia~GGi~~~~d 203 (230)
T TIGR00007 148 EELAKRLEE-LGLEGIIYTDISRDGTLSGPNFELTKELVKA-----------------------VNVPVIASGGVSSIDD 203 (230)
T ss_pred HHHHHHHHh-CCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHH
Confidence 444444543 4567 77788854332 22 5777777642 2579999999899999
Q ss_pred HHHHHHcCCCEEEE
Q 000920 1191 NEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1191 ~~~~l~aG~ddyl~ 1204 (1223)
..++++.|+|+++.
T Consensus 204 i~~~~~~Gadgv~i 217 (230)
T TIGR00007 204 LIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999875
No 285
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=39.94 E-value=1.5e+02 Score=33.87 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 267 KILVVFVLLGIAISVWLFWLLKEKMHLRRKETLAS 301 (1223)
Q Consensus 267 ~~l~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 301 (1223)
.+.++...+.+..|+.++...++.+++|.|+....
T Consensus 19 LPali~~~i~vv~sv~~~~~~~~~~qe~lrq~v~~ 53 (297)
T COG3452 19 LPALIGAVILVVVSVHAWLQLRRVSQERLRQLVKQ 53 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556667777777667767766665543
No 286
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=39.87 E-value=5.2e+02 Score=27.98 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHHHHHHHHHHHhcCcE
Q 000920 639 GVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIE 718 (1223)
Q Consensus 639 ~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~ 718 (1223)
+|..-+|+|.+...++ .+..++.|..|+...... |.|.|+-=|..-- -..++..++-.-+-. ..+...++
T Consensus 3 AI~NGLELL~~~~~~~-~~~~~~LI~~Sa~~A~aR----l~F~RlAFGaag~-~~~i~~~e~~~~~~~----~~~~~r~~ 72 (182)
T PF10090_consen 3 AINNGLELLDDEGDPE-MRPAMELIRESARNASAR----LRFFRLAFGAAGS-GQQIDLGEARSVLRG----YFAGGRIT 72 (182)
T ss_pred chhhhHHHHcCCCCcc-chHHHHHHHHHHHHHHHH----HHHHHHHcCCCCC-CCCCCHHHHHHHHHH----HHhCCceE
Confidence 5667789887655422 233677788887766554 4466665454432 356666664433333 33344566
Q ss_pred EEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEE
Q 000920 719 LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH 764 (1223)
Q Consensus 719 l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~ 764 (1223)
+...++... . |...-+++.||+-=|....|.||.|.|.+.
T Consensus 73 l~W~~~~~~-----~-~k~~vklllnl~l~a~~alprGG~i~V~~~ 112 (182)
T PF10090_consen 73 LDWQVERDL-----L-PKPEVKLLLNLLLCAEDALPRGGEITVSIE 112 (182)
T ss_pred EEccCcccc-----C-CHHHHHHHHHHHHHHHhhcCCCCEEEEEEe
Confidence 666544331 1 233448999999999999999999998754
No 287
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=38.94 E-value=2.6e+02 Score=27.75 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhhCCCEEEEECC--HHHHHHHhCCCCCccEEEEeCCCCCC-CHHHHHHHHHhh
Q 000920 1092 VNRRVAEGALKKHGAIVTCVDC--GRAAVDKLTPPHNFDACFMDLQMPEM-DGFQATWQIRHL 1151 (1223)
Q Consensus 1092 ~n~~vl~~~L~~~G~~V~~a~~--G~eAl~~l~~~~~~DlIlmDi~MP~M-DG~eatr~IR~~ 1151 (1223)
.....+..+|++.|+++..... -++.++.+.....||+|.+-+.-+.+ ...++++.||+.
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~ 65 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEV 65 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHH
Confidence 3456788999999988766553 44455555432579999998854443 245566777753
No 288
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.93 E-value=1.7e+02 Score=32.85 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=48.3
Q ss_pred HHHHHHhCCCCCccEEEEeCCCCCC-CH--HHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhH
Q 000920 1115 RAAVDKLTPPHNFDACFMDLQMPEM-DG--FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191 (1223)
Q Consensus 1115 ~eAl~~l~~~~~~DlIlmDi~MP~M-DG--~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~ 1191 (1223)
.+.++.+.+-.--.+|++|+..-+| .| +++++++++. .++|||+-.+-.+.++.
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~-----------------------~~ipvi~~GGi~s~edi 207 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKA-----------------------TTIPVIASGGIRHQQDI 207 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHHH
Confidence 5555555432224699999976543 33 5666777642 25799999999999999
Q ss_pred HHHHHcCCCEEEE
Q 000920 1192 EQCMKCGMDDYVS 1204 (1223)
Q Consensus 1192 ~~~l~aG~ddyl~ 1204 (1223)
.++++.|++..+.
T Consensus 208 ~~l~~~G~~~viv 220 (234)
T PRK13587 208 QRLASLNVHAAII 220 (234)
T ss_pred HHHHHcCCCEEEE
Confidence 9999999999875
No 289
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=38.17 E-value=1.3e+02 Score=22.15 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=31.7
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhh
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYL 967 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l 967 (1223)
+++++++++.........+...|+.+....+...+...+
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 40 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELL 40 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHH
Confidence 578899988888888888888899988888877776554
No 290
>PLN03128 DNA topoisomerase 2; Provisional
Probab=37.87 E-value=47 Score=45.39 Aligned_cols=50 Identities=28% Similarity=0.548 Sum_probs=28.5
Q ss_pred EEEEEecCCCCCHHhHh--------hhcCCCccc---CCCCCCCCCC-cccHHHHHHHHHHH
Q 000920 831 LVTVEDTGVGIPLEAQV--------RIFTPFMQA---DSSTSRTYGG-TGIGLSISRCLVEL 880 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~--------rLFepF~q~---d~stsr~~gG-TGLGLsI~k~LVel 880 (1223)
.|+|.|+|.|||-+..+ -||...... |....+..|| .|.|.+.|.-+-+.
T Consensus 87 sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~ 148 (1135)
T PLN03128 87 TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTE 148 (1135)
T ss_pred eEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCe
Confidence 38999999999976432 233222211 1111122234 58898888776554
No 291
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=37.82 E-value=1.8e+02 Score=32.58 Aligned_cols=68 Identities=10% Similarity=0.054 Sum_probs=49.3
Q ss_pred CHHHHHHHhCCCCCccEEEEeCCCCCCCH---HHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHH
Q 000920 1113 CGRAAVDKLTPPHNFDACFMDLQMPEMDG---FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189 (1223)
Q Consensus 1113 ~G~eAl~~l~~~~~~DlIlmDi~MP~MDG---~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~ 1189 (1223)
+..+.++.+.. ..=.++++|+..-++.. ++++++|.+. ..+||++-.+-.+.+
T Consensus 147 ~~~~~~~~~~~-~~~~li~~di~~~G~~~g~~~~~~~~i~~~-----------------------~~ipvi~~GGi~s~e 202 (233)
T cd04723 147 GPEELLRRLAK-WPEELIVLDIDRVGSGQGPDLELLERLAAR-----------------------ADIPVIAAGGVRSVE 202 (233)
T ss_pred CHHHHHHHHHH-hCCeEEEEEcCccccCCCcCHHHHHHHHHh-----------------------cCCCEEEeCCCCCHH
Confidence 45666666653 32248999997754322 5666666642 257999999999999
Q ss_pred hHHHHHHcCCCEEEE
Q 000920 1190 SNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1190 ~~~~~l~aG~ddyl~ 1204 (1223)
+.++++++|++..+.
T Consensus 203 di~~l~~~G~~~viv 217 (233)
T cd04723 203 DLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999998874
No 292
>PRK11677 hypothetical protein; Provisional
Probab=37.75 E-value=1.8e+02 Score=30.01 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000920 268 ILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVS 329 (1223)
Q Consensus 268 ~l~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~d~~a~~lq~~~~~~~~~~~aL~~l~~ 329 (1223)
+.++.+++|+++.+++..+..... +.+..+..+-|+.-..|.++=+...+|..--|.|+.
T Consensus 5 ~a~i~livG~iiG~~~~R~~~~~~--~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~ 64 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFGNRKL--RQQQALQYELEKNKAELEEYRQELVSHFARSAELLD 64 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777766655442 333444455555555555555555555555555554
No 293
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=37.39 E-value=3.7e+02 Score=28.76 Aligned_cols=86 Identities=16% Similarity=0.085 Sum_probs=54.4
Q ss_pred HHHHHHHHhhCCCEEE----EECCHHHHHHHhCCCCCccEEEEeC-----CCCCCCHHHHHHHHHhhhhhhhhhhhcCCc
Q 000920 1094 RRVAEGALKKHGAIVT----CVDCGRAAVDKLTPPHNFDACFMDL-----QMPEMDGFQATWQIRHLENEINEQIASGES 1164 (1223)
Q Consensus 1094 ~~vl~~~L~~~G~~V~----~a~~G~eAl~~l~~~~~~DlIlmDi-----~MP~MDG~eatr~IR~~e~~~~~~i~~g~~ 1164 (1223)
...+....++.|..+. .+.+..+++..+. ...|.|.... ......+.+.++++++.
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~--~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~------------- 156 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK--LGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL------------- 156 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH--CCCCEEEEcCcccccccCCCCCHHHHHHHHhh-------------
Confidence 3444556667787654 4556788777443 4678876632 11124556666666642
Q ss_pred ccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEEC
Q 000920 1165 SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205 (1223)
Q Consensus 1165 ~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~K 1205 (1223)
.++||++. +-...+...+++++|+|.++.-
T Consensus 157 ----------~~~~i~~~-GGI~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 157 ----------LGVKVAVA-GGITPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred ----------cCCCEEEE-CCcCHHHHHHHHhcCCCEEEEe
Confidence 14677654 4456899999999999987653
No 294
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=36.91 E-value=1e+02 Score=33.60 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=40.3
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCC--E-EEEECCHHHHHHHhCCCCCccEEEEeCC
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGA--I-VTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~--~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~ 1135 (1223)
.+++.||-|.....++..-++..|+ . .....|...++..+.....||+||+|-=
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP 123 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP 123 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC
Confidence 5799999999999999998888772 2 3334445577776654445999999963
No 295
>COG4984 Predicted membrane protein [Function unknown]
Probab=36.81 E-value=1.1e+02 Score=37.52 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=54.8
Q ss_pred CCCccchhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000920 258 PRSAGKWRMKILVVFVLLG--IAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTF 331 (1223)
Q Consensus 258 ~~~~~~~~~~~l~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~d~~a~~lq~~~~~~~~~~~aL~~l~~~~ 331 (1223)
+..+-.||+-+..++++.| ...|.+++|..++|+.-.+-|.|.=+.--....+-.-+=.+-++..-+++|+++|
T Consensus 5 ~~~~~~wr~~lt~~~ll~gt~~~~~gvi~~~a~nw~~ms~~eK~gV~slliV~~l~~v~f~~yea~k~~a~f~a~f 80 (644)
T COG4984 5 TLFHLSWRKYLTLLFLLLGTGFFASGVITWIAANWDYMSRFEKYGVQSLLIVSILLSVFFYYYEAKKKVAAFLAAF 80 (644)
T ss_pred chHHHHHHHHHHHHHHHhcchHHHhhhHHhhhhhHHhhhhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444569877777777777 6889999999999999999888887766666666666666666666666666655
No 296
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=36.78 E-value=3.8e+02 Score=30.58 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=63.5
Q ss_pred EEEec-ChhHHHHHHHHHhhCCCEE-EEECCHHHHHHHhCCCCCccEEEEe---CCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1085 LVVDD-NMVNRRVAEGALKKHGAIV-TCVDCGRAAVDKLTPPHNFDACFMD---LQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1085 LVVDD-n~~n~~vl~~~L~~~G~~V-~~a~~G~eAl~~l~~~~~~DlIlmD---i~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
|++.+ ++.....+....+.+|.++ ..+.+.+|+..... ..+|+|-.. ++--..| ++.+.++...-+
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~--~gadiIgin~rdl~~~~~d-~~~~~~l~~~~p------ 209 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK--LGAPLIGINNRNLKTFEVD-LETTERLAPLIP------ 209 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH--cCCCEEEECCCCcccccCC-HHHHHHHHHhCC------
Confidence 33344 3334444455556688774 44666777755443 357776532 1122334 666666654211
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEE-----CCCCHHHH
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS-----KPFEDEQL 1212 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~-----KP~~~~~L 1212 (1223)
...|+|+.++-.+.++..++.++|+|.++. ||=++.+.
T Consensus 210 ---------------~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~ 252 (260)
T PRK00278 210 ---------------SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAA 252 (260)
T ss_pred ---------------CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHH
Confidence 135899999999999999999999999764 55554443
No 297
>PRK12704 phosphodiesterase; Provisional
Probab=36.30 E-value=31 Score=43.24 Aligned_cols=44 Identities=7% Similarity=-0.074 Sum_probs=38.3
Q ss_pred cEEEEeccCCHH--hHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1178 PILAMTADVIQA--SNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1178 PIIalTA~~~~~--~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.+|++|+..... ....+++.|+.|+..||+..+++...+.+-+.
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 488899977665 88999999999999999999999999887653
No 298
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=36.04 E-value=5.3e+02 Score=27.02 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 000920 571 WTAINASIGVVVITLLVGHIFHAAINR-----IAQVENDYHEMMELKARAEAA 618 (1223)
Q Consensus 571 w~~~~~~i~~lvi~llv~~i~~~~i~r-----i~~ve~~~~el~e~k~~ae~a 618 (1223)
+..++..+.++++.+++..+++..+.. -..+..+..+..+.+.++++.
T Consensus 9 ~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~ 61 (164)
T PRK14471 9 GLFFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNL 61 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555554433 233444444444444444443
No 299
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=35.51 E-value=1.9e+02 Score=37.07 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=62.1
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHH-HHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRA-AVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~e-Al~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
+..+.++|.|+...+.+ ++.|+.+...+-.++ .++... -.+.|+++.-..=++ +-..++..+|+..
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~ag-i~~A~~vv~~~~d~~-~n~~i~~~~r~~~------- 489 (601)
T PRK03659 423 KMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAG-AEKAEAIVITCNEPE-DTMKIVELCQQHF------- 489 (601)
T ss_pred CCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhcC-CccCCEEEEEeCCHH-HHHHHHHHHHHHC-------
Confidence 44699999999866543 557988888775444 444443 346788776554322 2345556666543
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEEC
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~K 1205 (1223)
++++||+-+. +.++.++..++|+|..+.-
T Consensus 490 ---------------p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 490 ---------------PHLHILARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred ---------------CCCeEEEEeC--CHHHHHHHHhCCCCEEEcc
Confidence 3568887665 4567778889999988754
No 300
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.14 E-value=1e+02 Score=35.14 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=33.4
Q ss_pred cccEEEEecc------CCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1176 HVPILAMTAD------VIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1176 ~iPIIalTA~------~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
++|+++||=. ..+.-.++|.++|+|+.|.=.+..++....+.+.
T Consensus 89 ~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 89 TIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred CCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 5799999844 4456689999999999999767777666555443
No 301
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=35.11 E-value=5.8e+02 Score=27.16 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 000920 571 WTAINASIGVVVITLLVGHIFHAAINR-----IAQVENDYHEMMELKARAEA 617 (1223)
Q Consensus 571 w~~~~~~i~~lvi~llv~~i~~~~i~r-----i~~ve~~~~el~e~k~~ae~ 617 (1223)
|+.++..+.++++.+++.++++..+.. -..+..+..+..+.+.++++
T Consensus 19 ~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~ 70 (173)
T PRK13453 19 GTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQK 70 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555544433 23333444444444444443
No 302
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=34.62 E-value=8.6e+02 Score=30.10 Aligned_cols=65 Identities=25% Similarity=0.252 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 000920 571 WTAINASIGVVVITLLVGHIFHAAINR-----IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRT 635 (1223)
Q Consensus 571 w~~~~~~i~~lvi~llv~~i~~~~i~r-----i~~ve~~~~el~e~k~~ae~a~~aKs~FLA~vSHELRT 635 (1223)
|+.++..+.++++.+++.++++..+.. -..+.....+..+.+.+++++...-.+-++....|-+.
T Consensus 2 ~t~i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~ 71 (445)
T PRK13428 2 STFIGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAAR 71 (445)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544433 23344444444444444444433333334444444333
No 303
>PRK11677 hypothetical protein; Provisional
Probab=34.34 E-value=4.1e+02 Score=27.48 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000920 578 IGVVVITLLVGHIFHAAI 595 (1223)
Q Consensus 578 i~~lvi~llv~~i~~~~i 595 (1223)
++.+++.+++|+++.+..
T Consensus 7 ~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 345556666666665543
No 304
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=34.18 E-value=3.1e+02 Score=28.76 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=48.6
Q ss_pred CCCEEEE-ECCHHHHHHHhCCCCCccEEEEeCCCCC--------CCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCC
Q 000920 1104 HGAIVTC-VDCGRAAVDKLTPPHNFDACFMDLQMPE--------MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL 1174 (1223)
Q Consensus 1104 ~G~~V~~-a~~G~eAl~~l~~~~~~DlIlmDi~MP~--------MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~ 1174 (1223)
.+..+-. +.+..++.+... ..+|.|+.+---|. -.|.+..+++++.
T Consensus 94 ~~~~~g~~~~t~~~~~~~~~--~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 148 (196)
T cd00564 94 PDLIIGVSTHSLEEALRAEE--LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL----------------------- 148 (196)
T ss_pred CCCEEEeeCCCHHHHHHHhh--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----------------------
Confidence 3444333 244556655443 35899987643332 3456777777642
Q ss_pred CcccEEEEeccCCHHhHHHHHHcCCCEEEEC
Q 000920 1175 WHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205 (1223)
Q Consensus 1175 ~~iPIIalTA~~~~~~~~~~l~aG~ddyl~K 1205 (1223)
.++||++..+- ..++..++.++|+|++..=
T Consensus 149 ~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 149 VEIPVVAIGGI-TPENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCCCEEEECCC-CHHHHHHHHHcCCCEEEEe
Confidence 24799988765 4688999999999988654
No 305
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.13 E-value=1.9e+02 Score=29.37 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 270 VVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILV 328 (1223)
Q Consensus 270 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~d~~a~~lq~~~~~~~~~~~aL~~l~ 328 (1223)
++++++|+++.+++..+....... +..+..+-++.-..|.++=+...+|...-+-|+
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~~~--q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll 59 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQQK--QAKLEQELEQAKQELEQYKQEVNDHFAQTAELL 59 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888877766422 233334444444444443333334433333333
No 306
>PLN02591 tryptophan synthase
Probab=34.08 E-value=1.2e+02 Score=34.60 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=34.8
Q ss_pred cccEEEEeccC------CHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1176 HVPILAMTADV------IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1176 ~iPIIalTA~~------~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
++|+|.||=.+ .+.-.++|.++|+|+.|.=.+..++......+.-
T Consensus 78 ~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 78 SCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred CCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 57999888654 3555788999999999998888887776665543
No 307
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=33.84 E-value=2e+02 Score=32.88 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=65.2
Q ss_pred HHHHHhhCCCE--EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCC
Q 000920 1097 AEGALKKHGAI--VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL 1174 (1223)
Q Consensus 1097 l~~~L~~~G~~--V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~ 1174 (1223)
++..|+.-... +........+.+.+.. ..||.|+.|++=-.+|--++...||..+.
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a~-~G~D~v~iD~EHg~~~~~~~~~~i~a~~~--------------------- 67 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLGL-AGFDWLVLDGEHAPNDVSTFIPQLMALKG--------------------- 67 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHh-cCCCEEEEccccCCCCHHHHHHHHHHHhh---------------------
Confidence 55556543222 2222334456666653 46999999999999998888888886542
Q ss_pred CcccEEEEeccCCHHhHHHHHHcCCCEEEECCC-CHHHHHHHH
Q 000920 1175 WHVPILAMTADVIQASNEQCMKCGMDDYVSKPF-EDEQLYTAV 1216 (1223)
Q Consensus 1175 ~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~-~~~~L~~~v 1216 (1223)
..++.++=....+.....+++++|+++.+.==+ +.++....+
T Consensus 68 ~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v 110 (256)
T PRK10558 68 SASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAV 110 (256)
T ss_pred cCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHH
Confidence 234555556677889999999999999976333 345554444
No 308
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=33.71 E-value=2.4e+02 Score=30.68 Aligned_cols=94 Identities=13% Similarity=0.024 Sum_probs=57.0
Q ss_pred ecChhHHHHHHHHHhhCCCEEEEECC---HHHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhhhhhhhhhhcC
Q 000920 1088 DDNMVNRRVAEGALKKHGAIVTCVDC---GRAAVDKLTPPHNFDACFMDLQMPEMDG--FQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1088 DDn~~n~~vl~~~L~~~G~~V~~a~~---G~eAl~~l~~~~~~DlIlmDi~MP~MDG--~eatr~IR~~e~~~~~~i~~g 1162 (1223)
|....-..++..+|+..||+|...-. .++.++.+. ...+|+|-+-+.|+..-. -++.+.+|+..
T Consensus 95 d~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~-~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~---------- 163 (197)
T TIGR02370 95 DVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK-KEKPLMLTGSALMTTTMYGQKDINDKLKEEG---------- 163 (197)
T ss_pred chhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH-HcCCCEEEEccccccCHHHHHHHHHHHHHcC----------
Confidence 34456677788899999999996432 456666665 478999988887765422 22333344311
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEEC
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~K 1205 (1223)
...+++|+ +-+.... .+-+.+.|+|.|-.=
T Consensus 164 ----------~~~~v~i~-vGG~~~~--~~~~~~~gad~~~~d 193 (197)
T TIGR02370 164 ----------YRDSVKFM-VGGAPVT--QDWADKIGADVYGEN 193 (197)
T ss_pred ----------CCCCCEEE-EEChhcC--HHHHHHhCCcEEeCC
Confidence 01234554 4444432 245678899999653
No 309
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=33.25 E-value=1.2e+02 Score=30.69 Aligned_cols=113 Identities=22% Similarity=0.239 Sum_probs=69.4
Q ss_pred cccccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHH
Q 000920 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYML 1001 (1223)
Q Consensus 922 ~~~~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~ 1001 (1223)
...+.|++...|+.+...+..+-..|..-+.+|....+..+- ....++++++.....-.+.-...+.++
T Consensus 6 ~~~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~l-----------p~~hYD~~Ll~vavtfr~n~tm~~~~l 74 (140)
T COG4999 6 TACLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSAL-----------PPAHYDMMLLGVAVTFRENLTMQHERL 74 (140)
T ss_pred hhhhccceeEEecCccHHHHHHHHHHhcCCceEEeccccccc-----------ChhhhceeeecccccccCCchHHHHHH
Confidence 345789999999999999999999999999888775543211 123456666554332222211122222
Q ss_pred HHHHhcCCcccccCCCeEEEEe-ccCCccchhhhhcCCceeeeccccccccccc
Q 000920 1002 KQQRRKGGLEISRNLPKIFLLA-TSISETDRDELKSDGIVTLLTKPLRLSVLIG 1054 (1223)
Q Consensus 1002 ~~~~~~~~~~~~~~~p~i~ll~-~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~ 1054 (1223)
...- .+...++++ .+......+.++..|...++.||+....|..
T Consensus 75 ~~Al---------~mtd~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlp 119 (140)
T COG4999 75 AKAL---------SMTDFVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLP 119 (140)
T ss_pred HHHH---------hhhcceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHH
Confidence 1111 112223333 3444566788899999999999998777765
No 310
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=33.20 E-value=1.3e+02 Score=33.83 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=30.7
Q ss_pred cccEEEEeccCC------HHhHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 000920 1176 HVPILAMTADVI------QASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218 (1223)
Q Consensus 1176 ~iPIIalTA~~~------~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1218 (1223)
++|+++||-... .....+|.++|+|+.+.=....+++...+.+
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~ 124 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREA 124 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH
Confidence 579988887443 6678889999999999844445555444443
No 311
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=33.03 E-value=1.4e+02 Score=34.60 Aligned_cols=71 Identities=17% Similarity=0.283 Sum_probs=50.6
Q ss_pred EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccC
Q 000920 1107 IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186 (1223)
Q Consensus 1107 ~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~ 1186 (1223)
....+.+-+||.+.+. ...|+|.+| .|+.-+=-++.+.||+.. .-.+|..++..
T Consensus 191 IeVEv~tleea~ea~~--~GaDiI~lD-n~~~e~l~~~v~~l~~~~-----------------------~~~~leasGGI 244 (277)
T TIGR01334 191 ITVEADTIEQALTVLQ--ASPDILQLD-KFTPQQLHHLHERLKFFD-----------------------HIPTLAAAGGI 244 (277)
T ss_pred EEEECCCHHHHHHHHH--cCcCEEEEC-CCCHHHHHHHHHHHhccC-----------------------CCEEEEEECCC
Confidence 4556678999999875 459999999 454444444555554211 11378889999
Q ss_pred CHHhHHHHHHcCCCEEE
Q 000920 1187 IQASNEQCMKCGMDDYV 1203 (1223)
Q Consensus 1187 ~~~~~~~~l~aG~ddyl 1203 (1223)
..+...+..+.|+|-+.
T Consensus 245 ~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 245 NPENIADYIEAGIDLFI 261 (277)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998754
No 312
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=32.98 E-value=63 Score=35.14 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=40.6
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeC
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDL 1134 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi 1134 (1223)
++||+||.....---+..+|+..|++|++..|....++.+. ..+||.|++--
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~-~~~pd~iviSP 53 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIE-ALKPDAIVISP 53 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHh-hcCCCEEEEcC
Confidence 47999999998888899999999999999888743333343 34689998853
No 313
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=32.87 E-value=2.7e+02 Score=26.87 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=25.5
Q ss_pred HHhHHHHHHcCCCEEEECCC--CHHHHHHHHHHH
Q 000920 1188 QASNEQCMKCGMDDYVSKPF--EDEQLYTAVARF 1219 (1223)
Q Consensus 1188 ~~~~~~~l~aG~ddyl~KP~--~~~~L~~~v~r~ 1219 (1223)
.+....|+++|.+=|+.||+ +.+++.+.++..
T Consensus 76 ~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a 109 (120)
T PF01408_consen 76 AEIAKKALEAGKHVLVEKPLALTLEEAEELVEAA 109 (120)
T ss_dssp HHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHH
Confidence 45677899999999999998 788877766543
No 314
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=32.65 E-value=4.8e+02 Score=28.50 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=50.7
Q ss_pred hhCCCEEEE-ECCHHHHHHHhCCCCCccEEEEe---CCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcc
Q 000920 1102 KKHGAIVTC-VDCGRAAVDKLTPPHNFDACFMD---LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177 (1223)
Q Consensus 1102 ~~~G~~V~~-a~~G~eAl~~l~~~~~~DlIlmD---i~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~i 1177 (1223)
...|..+.. +.+-+++.+... ..+|.+..- ..+.. .+++.++++++.- ...+
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~--~g~~~i~~t~~~~~~~~-~~~~~~~~l~~~~---------------------~~~~ 173 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALA--LGAKIIGINNRDLKTFE-VDLNTTERLAPLI---------------------PKDV 173 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHH--cCCCEEEEeCCCccccC-cCHHHHHHHHHhC---------------------CCCC
Confidence 557877543 345555544433 357766432 11112 2357777776421 0247
Q ss_pred cEEEEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1178 PILAMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1178 PIIalTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
|||+..+-...++..+++++|+|+++.
T Consensus 174 pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 174 ILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred EEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999874
No 315
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.80 E-value=2.3e+02 Score=32.73 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=48.3
Q ss_pred EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccC
Q 000920 1107 IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186 (1223)
Q Consensus 1107 ~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~ 1186 (1223)
....+++-+||.+.+. ..+|+|.+|= |+ ++.++++-++.+. + .++ .+|..++..
T Consensus 185 I~VEv~tleea~~A~~--~GaDiI~LDn----~~-~e~l~~~v~~~~~-------~-----------~~~-~~ieAsGgI 238 (273)
T PRK05848 185 IEIECESLEEAKNAMN--AGADIVMCDN----MS-VEEIKEVVAYRNA-------N-----------YPH-VLLEASGNI 238 (273)
T ss_pred EEEEeCCHHHHHHHHH--cCCCEEEECC----CC-HHHHHHHHHHhhc-------c-----------CCC-eEEEEECCC
Confidence 4556778999999875 4589998874 33 4444444332110 0 112 357778888
Q ss_pred CHHhHHHHHHcCCCEEEE
Q 000920 1187 IQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1187 ~~~~~~~~l~aG~ddyl~ 1204 (1223)
+.+...+..+.|+|.+.+
T Consensus 239 t~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 239 TLENINAYAKSGVDAISS 256 (273)
T ss_pred CHHHHHHHHHcCCCEEEe
Confidence 999999999999987653
No 316
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=30.28 E-value=4.3e+02 Score=24.20 Aligned_cols=72 Identities=14% Similarity=0.243 Sum_probs=47.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHHHHHH
Q 000920 629 VSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLF 708 (1223)
Q Consensus 629 vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~vl~~f 708 (1223)
+.|-++|=|..|.+++.+-.....+++.++.+..+......+..+ -+.|-- ++ ....+|+.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~v-h~~L~~----~~----~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALV-HEQLYQ----SE----DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHhc----CC----CCCeecHHHHHHHHHHHH
Confidence 579999999999999998776666666666555555444433322 222221 11 235789999999888765
Q ss_pred H
Q 000920 709 S 709 (1223)
Q Consensus 709 ~ 709 (1223)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 4
No 317
>PRK00811 spermidine synthase; Provisional
Probab=30.17 E-value=2e+02 Score=33.08 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=40.0
Q ss_pred cEEEEEecChhHHHHHHHHHhhCC------CEE-EEECCHHHHHHHhCCCCCccEEEEeCCCCC
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHG------AIV-TCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G------~~V-~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~ 1138 (1223)
.+|.+||=|+...++++..|...+ -.+ ....|+.+.+.. ....||+||+|..-|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccEEEECCCCCC
Confidence 479999999999999999886532 122 345567766554 2467999999987664
No 318
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.79 E-value=3.4e+02 Score=27.76 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 270 VVFVLLGIAISVWLFWLLKEKMHL--RRKETL---ASMCDERARMLQDQFNVSMNHVHALAILV 328 (1223)
Q Consensus 270 ~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~---~~~~d~~a~~lq~~~~~~~~~~~aL~~l~ 328 (1223)
.+.+++|+++..++.......... +.+.++ ..+-|+-.+-|-+.|+.+-..+..|+-=|
T Consensus 12 ~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 12 LIGLVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777777777776665444 333332 24556666677777777777776666544
No 319
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=29.45 E-value=8e+02 Score=27.04 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 000920 570 PWTAINASIGVVVITLLVGHIFHAAI-----NRIAQVENDYHEMMELKARAEAA 618 (1223)
Q Consensus 570 ~w~~~~~~i~~lvi~llv~~i~~~~i-----~ri~~ve~~~~el~e~k~~ae~a 618 (1223)
+|..++..+.++++.+++..+++..+ .|-..+..++.+..+.+.+++..
T Consensus 53 ~~~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~ 106 (204)
T PRK09174 53 ASQLLWLAITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAA 106 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333 23334444455555555444443
No 320
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=29.41 E-value=3.3e+02 Score=35.64 Aligned_cols=102 Identities=12% Similarity=0.123 Sum_probs=69.1
Q ss_pred HHHHHhhCCCEEEEE--CCHHHHHHHhCCCCCccEEEEeCCCCC-C----CHHHHHHHHHhhhhhhhhhhhcCCcccccc
Q 000920 1097 AEGALKKHGAIVTCV--DCGRAAVDKLTPPHNFDACFMDLQMPE-M----DGFQATWQIRHLENEINEQIASGESSAEMF 1169 (1223)
Q Consensus 1097 l~~~L~~~G~~V~~a--~~G~eAl~~l~~~~~~DlIlmDi~MP~-M----DG~eatr~IR~~e~~~~~~i~~g~~~~~~~ 1169 (1223)
.-..|++.|+.+..- .+|...+..+.. -++|.|=+|-.+=. . ....+++.|..+-..
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l~~-l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 746 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRLVS-LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQS--------------- 746 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHhh-CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHH---------------
Confidence 445688999998775 467777777763 56999988864311 1 122333444332211
Q ss_pred cCCCCCcccEEEEeccCCHHhHHHHHHcCCC----EEEECCCCHHHHHHHHHHHh
Q 000920 1170 GNVGLWHVPILAMTADVIQASNEQCMKCGMD----DYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1170 ~~~~~~~iPIIalTA~~~~~~~~~~l~aG~d----dyl~KP~~~~~L~~~v~r~l 1220 (1223)
-++.+|| ++=.+.+....+.+.|+| .|+.||...++|...|++|.
T Consensus 747 -----~~i~via-~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~~ 795 (799)
T PRK11359 747 -----LNLTVVA-EGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVL 795 (799)
T ss_pred -----CCCeEEE-EcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhcc
Confidence 2455554 566778888889999998 57899999999999888874
No 321
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=28.96 E-value=1.7e+02 Score=33.28 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=33.3
Q ss_pred cccEEEEeccCC------HHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1176 HVPILAMTADVI------QASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1176 ~iPIIalTA~~~------~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
.+|++.||-... +....+|.++|+|+.+.=....++....+.+.
T Consensus 87 ~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 87 NIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred CCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 579888887665 67788999999999988777767665555443
No 322
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=28.81 E-value=1.1e+02 Score=30.92 Aligned_cols=70 Identities=9% Similarity=0.136 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000920 264 WRMKILVVFVLLG-IAISVWLFWLLKEKMHLRRKE----TLASMCDERARMLQDQFNVSMNHVHALAILVSTFHH 333 (1223)
Q Consensus 264 ~~~~~l~~~~~~~-~~~s~~~~~~~~~~~~~~~~~----~~~~~~d~~a~~lq~~~~~~~~~~~aL~~l~~~~~~ 333 (1223)
|-|.+.++.+++| .++.+++|..+|--.-.+=.. .=..-..++.+.+.++|+..-.-++.++.+|++.+|
T Consensus 35 ~VRl~~vl~~~~~~~~~~~~~Yi~l~~~lp~~P~~~~~~~~~~s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~f 109 (118)
T PRK10697 35 LVRIIVVLSIFFGLFVFTLVAYIILSFALDPMPDNMAFGEQQPSSSELLDEVDRELAAGEQRLREMERYVTSDTF 109 (118)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhccCCcccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4455555555544 344555555555432221111 113456777888999999999999999999976544
No 323
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=28.21 E-value=3e+02 Score=35.48 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=60.2
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHH-HHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRA-AVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~e-Al~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
+..+.++|.|+...+.+ ++.|+.+...+-.+. .++... -++.|+++.-..=++. -..++..+|+..
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~ag-i~~A~~vvv~~~d~~~-n~~i~~~ar~~~------- 489 (621)
T PRK03562 423 GVKMTVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESAG-AAKAEVLINAIDDPQT-SLQLVELVKEHF------- 489 (621)
T ss_pred CCCEEEEECCHHHHHHH----HhcCCeEEEEeCCCHHHHHhcC-CCcCCEEEEEeCCHHH-HHHHHHHHHHhC-------
Confidence 34689999999876554 457888877664443 344333 3468888876543322 245556666542
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
++++|++-+.+ .+...+..++|+|..+.
T Consensus 490 ---------------p~~~iiaRa~d--~~~~~~L~~~Gad~v~~ 517 (621)
T PRK03562 490 ---------------PHLQIIARARD--VDHYIRLRQAGVEKPER 517 (621)
T ss_pred ---------------CCCeEEEEECC--HHHHHHHHHCCCCEEeh
Confidence 35688886644 56677888999997643
No 324
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=28.14 E-value=4.1e+02 Score=29.85 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCCCEEEEECCH---HHHHHHhCCCCCccEEEEeCCCCCCCH------HHHHHHHHhhhhhhhhhhhcCC
Q 000920 1093 NRRVAEGALKKHGAIVTCVDCG---RAAVDKLTPPHNFDACFMDLQMPEMDG------FQATWQIRHLENEINEQIASGE 1163 (1223)
Q Consensus 1093 n~~vl~~~L~~~G~~V~~a~~G---~eAl~~l~~~~~~DlIlmDi~MP~MDG------~eatr~IR~~e~~~~~~i~~g~ 1163 (1223)
....+...++++|..+..+-+. .+.++.+.. ...++++| -.+|+-.+ .+.++++|++-
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~-~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~----------- 183 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK-LSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV----------- 183 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-hCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc-----------
Confidence 3445667778899876666554 345554432 45677888 55676422 23444454321
Q ss_pred cccccccCCCCCcccEEEEeccC-CHHhHHHHHHcCCCEEEECC
Q 000920 1164 SSAEMFGNVGLWHVPILAMTADV-IQASNEQCMKCGMDDYVSKP 1206 (1223)
Q Consensus 1164 ~~~~~~~~~~~~~iPIIalTA~~-~~~~~~~~l~aG~ddyl~KP 1206 (1223)
...||+ +-+.. ..++..++.++|+|.++.--
T Consensus 184 -----------~~~~i~-v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 184 -----------GNKYLV-VGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred -----------CCCCEE-EeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 124654 44444 78889999999999999864
No 325
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=28.05 E-value=2.9e+02 Score=31.81 Aligned_cols=79 Identities=9% Similarity=0.048 Sum_probs=56.9
Q ss_pred HHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHH
Q 000920 1114 GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193 (1223)
Q Consensus 1114 G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~ 1193 (1223)
.-.+.+.+.. ..||.|+.|++=--.|--++...||.... ..++.++=....+.....+
T Consensus 28 sp~~~E~~a~-~GfD~v~iD~EHg~~~~~~l~~~i~a~~~---------------------~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 28 TSYMAEIAAT-SGYDWLLIDGEHAPNTIQDLYHQLQAIAP---------------------YASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred CcHHHHHHHH-cCCCEEEEccccCCCCHHHHHHHHHHHHh---------------------cCCCeEEECCCCCHHHHHH
Confidence 3456666654 45999999999998888888888887542 1234455566778899999
Q ss_pred HHHcCCCEEEECCCC-HHHHHH
Q 000920 1194 CMKCGMDDYVSKPFE-DEQLYT 1214 (1223)
Q Consensus 1194 ~l~aG~ddyl~KP~~-~~~L~~ 1214 (1223)
++++|+++.+.==++ .++...
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~ 107 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQ 107 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHH
Confidence 999999999874444 333333
No 326
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=27.67 E-value=2e+02 Score=32.35 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=25.8
Q ss_pred cccEEEEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1176 HVPILAMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1176 ~iPIIalTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
.+|||+.-+=.+.++..++++.|+|....
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 48999988888999999999999998764
No 327
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=27.63 E-value=1.9e+02 Score=32.86 Aligned_cols=82 Identities=15% Similarity=0.054 Sum_probs=58.9
Q ss_pred CHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHH
Q 000920 1113 CGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192 (1223)
Q Consensus 1113 ~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~ 1192 (1223)
....+.+.+.. ..||.|+.|++=-.+|--++...||..+. ..++.++=....+.....
T Consensus 21 ~sp~~~e~~a~-~G~D~v~iD~EHg~~~~~~~~~~~~a~~~---------------------~g~~~~VRvp~~~~~~i~ 78 (249)
T TIGR03239 21 GNPITTEVLGL-AGFDWLLLDGEHAPNDVLTFIPQLMALKG---------------------SASAPVVRPPWNEPVIIK 78 (249)
T ss_pred CCcHHHHHHHh-cCCCEEEEecccCCCCHHHHHHHHHHHhh---------------------cCCCcEEECCCCCHHHHH
Confidence 34566666654 46999999999999998888888886542 134455555677889999
Q ss_pred HHHHcCCCEEEECCCC-HHHHHHHH
Q 000920 1193 QCMKCGMDDYVSKPFE-DEQLYTAV 1216 (1223)
Q Consensus 1193 ~~l~aG~ddyl~KP~~-~~~L~~~v 1216 (1223)
+++++|+++.+.==++ .++....+
T Consensus 79 r~LD~Ga~gIivP~v~taeea~~~v 103 (249)
T TIGR03239 79 RLLDIGFYNFLIPFVESAEEAERAV 103 (249)
T ss_pred HHhcCCCCEEEecCcCCHHHHHHHH
Confidence 9999999998773333 45554444
No 328
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=27.51 E-value=5.7e+02 Score=28.08 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=51.2
Q ss_pred HHHhhCCCEEEEE-CCHHHHHHHhCCCCCccEEEEeCCCCC-------CCHHHHHHHHHhhhhhhhhhhhcCCccccccc
Q 000920 1099 GALKKHGAIVTCV-DCGRAAVDKLTPPHNFDACFMDLQMPE-------MDGFQATWQIRHLENEINEQIASGESSAEMFG 1170 (1223)
Q Consensus 1099 ~~L~~~G~~V~~a-~~G~eAl~~l~~~~~~DlIlmDi~MP~-------MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~ 1170 (1223)
..+++.+..+... .+..++..... ...|.|+.|-.-++ ...++.++++|+.
T Consensus 96 ~~~~~~~i~~i~~v~~~~~~~~~~~--~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~------------------- 154 (236)
T cd04730 96 ERLKAAGIKVIPTVTSVEEARKAEA--AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA------------------- 154 (236)
T ss_pred HHHHHcCCEEEEeCCCHHHHHHHHH--cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH-------------------
Confidence 3445556554443 34555544333 34787776542111 2456677777642
Q ss_pred CCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEEC
Q 000920 1171 NVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205 (1223)
Q Consensus 1171 ~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~K 1205 (1223)
..+||++.-+-...++..+++++|+|+.+.-
T Consensus 155 ----~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 ----VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred ----hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 1479999887777799999999999988754
No 329
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=27.49 E-value=72 Score=39.91 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.5
Q ss_pred EEEEEecCCCCCHHhHhhhcCCCcc
Q 000920 831 LVTVEDTGVGIPLEAQVRIFTPFMQ 855 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFepF~q 855 (1223)
.+.|+|+|.||-.++++-+-++|..
T Consensus 58 LlQisDnG~GI~reDl~ilCeRftT 82 (694)
T KOG1979|consen 58 LLQISDNGSGIRREDLPILCERFTT 82 (694)
T ss_pred EEEEecCCCccchhhhHHHHHHhhh
Confidence 4779999999999999999999964
No 330
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.44 E-value=2.4e+02 Score=24.95 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=28.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000920 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDL 670 (1223)
Q Consensus 625 FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~L 670 (1223)
.+...-||+.+-|+.|.|++++= -.++..+|+..+....+..
T Consensus 15 ~lR~~RHD~~NhLqvI~gllqlg----~~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQLG----KYEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHH
Confidence 34556899999999999999862 2344456666655554444
No 331
>PHA02047 phage lambda Rz1-like protein
Probab=27.38 E-value=5.4e+02 Score=25.07 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 304 DERARMLQDQFNVSMNHVHALAILV 328 (1223)
Q Consensus 304 d~~a~~lq~~~~~~~~~~~aL~~l~ 328 (1223)
....+.++.+++.+..+|.+|..=-
T Consensus 40 a~qLE~a~~r~~~~Q~~V~~l~~ka 64 (101)
T PHA02047 40 TARLEALEVRYATLQRHVQAVEART 64 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888888888888887653
No 332
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=27.17 E-value=3.6e+02 Score=30.39 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=47.3
Q ss_pred CcEEEEE------ecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhh
Q 000920 1081 GKQILVV------DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151 (1223)
Q Consensus 1081 ~~rILVV------DDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~ 1151 (1223)
+++|++| +|...........+++.|+++......++.++.+. ..|+|++ ++-|-+.+++.+|+.
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~---~ad~I~v----~GGnt~~l~~~l~~~ 100 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE---NAEAIFV----GGGNTFQLLKQLYER 100 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh---cCCEEEE----CCccHHHHHHHHHHC
Confidence 4567766 44444456688899999999999888877777664 3688875 677888888888754
No 333
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=27.09 E-value=9.7e+02 Score=27.22 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 571 WTAINASIGVVVITLLVGHIFHAAIN 596 (1223)
Q Consensus 571 w~~~~~~i~~lvi~llv~~i~~~~i~ 596 (1223)
|+.++..+-++++.+++..++|..+.
T Consensus 6 ~t~~~qiInFlILv~lL~~fl~kPi~ 31 (250)
T PRK14474 6 FTVVAQIINFLILVYLLRRFLYKPII 31 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445455555555566666665443
No 334
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=26.78 E-value=4.2e+02 Score=31.04 Aligned_cols=83 Identities=16% Similarity=0.055 Sum_probs=55.9
Q ss_pred HHHHHhhCCCEEE-EECCHHHHHHHhCCCCCccEEEEeCC---C--CCCCHHHHHHHHHhhhhhhhhhhhcCCccccccc
Q 000920 1097 AEGALKKHGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQ---M--PEMDGFQATWQIRHLENEINEQIASGESSAEMFG 1170 (1223)
Q Consensus 1097 l~~~L~~~G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~---M--P~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~ 1170 (1223)
+-..+++.|..+. .+.+-++|..... ...|.|+..-. . ....-+++++++++.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~--~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~------------------- 159 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK--AGADAVIAEGMESGGHIGELTTMALVPQVVDA------------------- 159 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH--cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH-------------------
Confidence 4455677786654 3566777766543 45888876332 1 111236777777641
Q ss_pred CCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1171 NVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1171 ~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
-++|||+--+-.+.++..+++..|+|+...
T Consensus 160 ----~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 160 ----VSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred ----hCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 148999998888999999999999998764
No 335
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=26.66 E-value=1.6e+02 Score=33.95 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=45.0
Q ss_pred CccccCCCCcEEEEEecChh---HHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEe
Q 000920 1073 PSLGHLLKGKQILVVDDNMV---NRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMD 1133 (1223)
Q Consensus 1073 ~~~~~~~~~~rILVVDDn~~---n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmD 1133 (1223)
|.+...+++++||||-|.+. -.++++..++++......++.+.+.+... ..+||+|+=|
T Consensus 172 PD~~n~~~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdGaAD~l~~~--GykP~lIvGd 233 (395)
T COG4825 172 PDLDNDLRGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDGAADVLRKA--GYKPQLIVGD 233 (395)
T ss_pred CcccchhcccEEEEEeCCCChHhHHHHHHHHHHhhCCEEEEccchHHHHHHc--CCCcceeecC
Confidence 34555678999999998874 45677888999887777777777776553 4679999876
No 336
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=26.56 E-value=1.4e+02 Score=32.14 Aligned_cols=48 Identities=10% Similarity=-0.012 Sum_probs=34.0
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEE
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlm 1132 (1223)
||+||-....-.-+..+|++.|+.+....+....++.+. ...||.|+.
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIE-ALLPLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHH-hcCCCEEEE
Confidence 899999888888899999999999988775432223332 235785444
No 337
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=26.55 E-value=2.4e+02 Score=30.46 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=35.5
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEE
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlm 1132 (1223)
|+|||=..-|...+...|++.|+.+..+.+..+ +. .||.|++
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~----l~---~~d~iii 42 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEE----IL---SADKLIL 42 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHH----hc---cCCEEEE
Confidence 689999999999999999999999999997543 22 4898887
No 338
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.54 E-value=6.1e+02 Score=31.29 Aligned_cols=107 Identities=8% Similarity=0.018 Sum_probs=59.7
Q ss_pred CCcEEEEEecChh---HHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhhhhh
Q 000920 1080 KGKQILVVDDNMV---NRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG--FQATWQIRHLENE 1154 (1223)
Q Consensus 1080 ~~~rILVVDDn~~---n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG--~eatr~IR~~e~~ 1154 (1223)
.+++|++++-|.. -...+....+..|..+..+.+..++.+.+.. ..+|+||.|- |+... .+.+..++++-..
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-~~~D~VLIDT--aGr~~rd~~~l~eL~~~~~~ 327 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-DGSELILIDT--AGYSHRNLEQLERMQSFYSC 327 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-CCCCEEEEeC--CCCCccCHHHHHHHHHHHHh
Confidence 3568988887761 1223344444557766666656666666653 6799999996 33221 2334444432211
Q ss_pred hhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHH----cCCCEEEE
Q 000920 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK----CGMDDYVS 1204 (1223)
Q Consensus 1155 ~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~----aG~ddyl~ 1204 (1223)
. + .....-.++++.|....++.....+ .|.++.|.
T Consensus 328 ~------~---------~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 328 F------G---------EKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred h------c---------CCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 0 0 0012235788888877766666544 57776654
No 339
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=26.39 E-value=4.6e+02 Score=28.01 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=51.8
Q ss_pred HHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCC--------CCHHHHHHHHHhhhhhhhhhhhcCCccccc
Q 000920 1097 AEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE--------MDGFQATWQIRHLENEINEQIASGESSAEM 1168 (1223)
Q Consensus 1097 l~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~--------MDG~eatr~IR~~e~~~~~~i~~g~~~~~~ 1168 (1223)
++..+......-..+.+..++.+... ...|.|+.+-..|. ..|.+..+.+.+.-
T Consensus 89 ~r~~~~~~~~ig~s~h~~~e~~~a~~--~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~---------------- 150 (196)
T TIGR00693 89 ARALLGPDKIIGVSTHNLEELAEAEA--EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS---------------- 150 (196)
T ss_pred HHHhcCCCCEEEEeCCCHHHHHHHhH--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----------------
Confidence 33444332233344556667665433 46899887654442 24788887776421
Q ss_pred ccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1169 FGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1169 ~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
..+||+++-+- ..++..++++.|++++..
T Consensus 151 ------~~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 151 ------IDIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred ------CCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 13798888655 578888999999998753
No 340
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=26.29 E-value=3.5e+02 Score=23.36 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 270 VVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQD 312 (1223)
Q Consensus 270 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~d~~a~~lq~ 312 (1223)
|-++.+|+++|..++......+++.-|+...+..+---.++++
T Consensus 5 vY~vi~gI~~S~ym~v~t~~eE~~~dq~~IEkEGevymeR~e~ 47 (52)
T PF14147_consen 5 VYFVIAGIIFSGYMAVKTAKEEREIDQEFIEKEGEVYMERMEE 47 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 4466789999999998888888777777766666655444443
No 341
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=26.07 E-value=2.2e+02 Score=31.33 Aligned_cols=66 Identities=11% Similarity=0.179 Sum_probs=45.4
Q ss_pred HHHHHHhCCCCCcc-EEEEeCCCCCC-CH--HHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHh
Q 000920 1115 RAAVDKLTPPHNFD-ACFMDLQMPEM-DG--FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190 (1223)
Q Consensus 1115 ~eAl~~l~~~~~~D-lIlmDi~MP~M-DG--~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~ 1190 (1223)
.+..+.+.. ..++ ++++|+..-++ .| ++.++++++. .++|||+-.+-.+.++
T Consensus 149 ~e~~~~~~~-~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-----------------------~~ipvia~GGi~~~~d 204 (233)
T PRK00748 149 EDLAKRFED-AGVKAIIYTDISRDGTLSGPNVEATRELAAA-----------------------VPIPVIASGGVSSLDD 204 (233)
T ss_pred HHHHHHHHh-cCCCEEEEeeecCcCCcCCCCHHHHHHHHHh-----------------------CCCCEEEeCCCCCHHH
Confidence 444444432 3355 77777754222 33 6777777742 2479999999899999
Q ss_pred HHHHHHcC-CCEEEE
Q 000920 1191 NEQCMKCG-MDDYVS 1204 (1223)
Q Consensus 1191 ~~~~l~aG-~ddyl~ 1204 (1223)
..++++.| +|+.+.
T Consensus 205 i~~~~~~g~~~gv~v 219 (233)
T PRK00748 205 IKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHcCCccEEEE
Confidence 99999998 999874
No 342
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.01 E-value=2.4e+02 Score=32.90 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=47.7
Q ss_pred EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccC
Q 000920 1107 IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186 (1223)
Q Consensus 1107 ~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~ 1186 (1223)
....+++-+||.+.+. ...|+|.+| +|+.-+=-++.+.+|.. ..+ ..|..++..
T Consensus 202 IeVEv~tl~ea~eal~--~gaDiI~LD-nm~~e~vk~av~~~~~~----------------------~~~-v~ieaSGGI 255 (289)
T PRK07896 202 CEVEVDSLEQLDEVLA--EGAELVLLD-NFPVWQTQEAVQRRDAR----------------------APT-VLLESSGGL 255 (289)
T ss_pred EEEEcCCHHHHHHHHH--cCCCEEEeC-CCCHHHHHHHHHHHhcc----------------------CCC-EEEEEECCC
Confidence 5666788999999885 458999999 44421112222222221 112 367888999
Q ss_pred CHHhHHHHHHcCCCEEE
Q 000920 1187 IQASNEQCMKCGMDDYV 1203 (1223)
Q Consensus 1187 ~~~~~~~~l~aG~ddyl 1203 (1223)
..+...+..+.|+|-+.
T Consensus 256 ~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 256 TLDTAAAYAETGVDYLA 272 (289)
T ss_pred CHHHHHHHHhcCCCEEE
Confidence 99999999999998654
No 343
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=25.68 E-value=7.9e+02 Score=25.73 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 571 WTAINASIGVVVITLLVGHIFHAAIN 596 (1223)
Q Consensus 571 w~~~~~~i~~lvi~llv~~i~~~~i~ 596 (1223)
|..++..+.++++.+++.++++..+.
T Consensus 9 ~~~~~~~inflil~~lL~~fl~kpi~ 34 (164)
T PRK14473 9 GLLIAQLINFLLLIFLLRTFLYRPVL 34 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555566666655443
No 344
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.65 E-value=6.8e+02 Score=25.45 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000920 579 GVVVITLLVGHIFHAAI 595 (1223)
Q Consensus 579 ~~lvi~llv~~i~~~~i 595 (1223)
+.+++.+++|+++.+..
T Consensus 4 i~lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLT 20 (128)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33455555555554443
No 345
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=25.45 E-value=1.7e+02 Score=29.62 Aligned_cols=32 Identities=9% Similarity=0.082 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000920 302 MCDERARMLQDQFNVSMNHVHALAILVSTFHH 333 (1223)
Q Consensus 302 ~~d~~a~~lq~~~~~~~~~~~aL~~l~~~~~~ 333 (1223)
-...+.+.+.++|+..-.-++.++.+|++.+|
T Consensus 81 ~~~~~l~~~~~~~~~~e~Rl~~mE~yVTS~~f 112 (121)
T TIGR02978 81 SPRQALREVKREFRDLERRLRNMERYVTSDTF 112 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 46777888999999999999999999976544
No 346
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=25.42 E-value=2e+02 Score=30.77 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=46.1
Q ss_pred EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccC
Q 000920 1107 IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186 (1223)
Q Consensus 1107 ~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~ 1186 (1223)
....+++-+|+.+.+. ...|.|.+|=.-| +-++++.+.-... .++ ..|..++..
T Consensus 83 I~VEv~~~ee~~ea~~--~g~d~I~lD~~~~-----~~~~~~v~~l~~~------------------~~~-v~ie~SGGI 136 (169)
T PF01729_consen 83 IEVEVENLEEAEEALE--AGADIIMLDNMSP-----EDLKEAVEELREL------------------NPR-VKIEASGGI 136 (169)
T ss_dssp EEEEESSHHHHHHHHH--TT-SEEEEES-CH-----HHHHHHHHHHHHH------------------TTT-SEEEEESSS
T ss_pred EEEEcCCHHHHHHHHH--hCCCEEEecCcCH-----HHHHHHHHHHhhc------------------CCc-EEEEEECCC
Confidence 4456777888888776 3599999996544 3333332210110 012 688899999
Q ss_pred CHHhHHHHHHcCCCEEEE
Q 000920 1187 IQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1187 ~~~~~~~~l~aG~ddyl~ 1204 (1223)
..+...+..+.|+|.+-+
T Consensus 137 ~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 137 TLENIAEYAKTGVDVISV 154 (169)
T ss_dssp STTTHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHhcCCCEEEc
Confidence 999999999999987753
No 347
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=25.42 E-value=8.3e+02 Score=25.92 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 000920 571 WTAINASIGVVVITLLVGHIFHAAIN-----RIAQVENDYHEMMELKARAE 616 (1223)
Q Consensus 571 w~~~~~~i~~lvi~llv~~i~~~~i~-----ri~~ve~~~~el~e~k~~ae 616 (1223)
|..++..+.++++.+++.++++..+. |-..+.....+..+.+.+++
T Consensus 19 ~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~ 69 (175)
T PRK14472 19 GLIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAE 69 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455544433 23334444444444443333
No 348
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.50 E-value=5.9e+02 Score=24.45 Aligned_cols=13 Identities=15% Similarity=0.496 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 000920 581 VVITLLVGHIFHA 593 (1223)
Q Consensus 581 lvi~llv~~i~~~ 593 (1223)
.+++++++|.++.
T Consensus 12 ~v~~~i~~y~~~k 24 (87)
T PF10883_consen 12 AVVALILAYLWWK 24 (87)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445555443
No 349
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.45 E-value=33 Score=34.77 Aligned_cols=25 Identities=12% Similarity=0.289 Sum_probs=11.2
Q ss_pred hhhhhhhhhhhhhhhhhhhhhcccc
Q 000920 205 WWFICGMVVICIIVSLLFKSRRNHK 229 (1223)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (1223)
|.+||.+|+.+.+..++++.+|.+|
T Consensus 5 ~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444445555554444433
No 350
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=24.31 E-value=6.9e+02 Score=31.47 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=61.6
Q ss_pred CcEEEEEecChh---HHHHHHHHHhh-C-CCEEEE--ECCHHHHHHHhCCCCCccEEEEeC--------------CCCCC
Q 000920 1081 GKQILVVDDNMV---NRRVAEGALKK-H-GAIVTC--VDCGRAAVDKLTPPHNFDACFMDL--------------QMPEM 1139 (1223)
Q Consensus 1081 ~~rILVVDDn~~---n~~vl~~~L~~-~-G~~V~~--a~~G~eAl~~l~~~~~~DlIlmDi--------------~MP~M 1139 (1223)
+..|+++|--.- +..-+-..+++ + +..+.. +.+.++|...+. ...|.|..-+ -.|..
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~~~~t~~~~~~g~~~~ 337 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCccccCccccccCCCcc
Confidence 446788875432 21122333444 3 355543 677888888765 4689887632 12232
Q ss_pred CHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1140 DG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
.-+..+.++.+ ...+||||=.+-....+..+|+.+||+..+.
T Consensus 338 ~~i~~~~~~~~-----------------------~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 338 TAVYKVASIAA-----------------------QHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred cHHHHHHHHHH-----------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 33333433332 1258999999999999999999999998764
No 351
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=23.63 E-value=1.6e+02 Score=33.17 Aligned_cols=27 Identities=26% Similarity=0.575 Sum_probs=21.5
Q ss_pred eEEeCHHHHHHHHHHHHHHHHhccCCCC
Q 000920 730 VVIGDPGRFRQIITNLVGNSIKFTQDKG 757 (1223)
Q Consensus 730 ~v~gD~~rL~QIL~NLLsNAIKfT~~~G 757 (1223)
++.|||.|..+|-. |++|+.+-....+
T Consensus 21 ilpGdP~R~~~iA~-lld~~~~va~~Re 47 (248)
T COG2820 21 ILPGDPERVEKIAK-LLDNPVLVASNRE 47 (248)
T ss_pred EecCCHHHHHHHHH-Hhccchhhhhccc
Confidence 45699999999987 9999988765443
No 352
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=23.56 E-value=2.6e+02 Score=31.73 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=40.8
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhCC----CCCccEEEEeCC
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGA--IVT-CVDCGRAAVDKLTP----PHNFDACFMDLQ 1135 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~--~V~-~a~~G~eAl~~l~~----~~~~DlIlmDi~ 1135 (1223)
-+|.-+|=|+....+++..+++.|+ .|. ...+..+.+..+.. ...||+||+|..
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 3799999999999999999999985 233 34455666655532 257999999986
No 353
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=23.51 E-value=1.5e+02 Score=34.16 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=39.4
Q ss_pred cccEEEEeccCCHHhHHHHHHcCCCE------EEECCCCHHHHHHHHHHHhh
Q 000920 1176 HVPILAMTADVIQASNEQCMKCGMDD------YVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1176 ~iPIIalTA~~~~~~~~~~l~aG~dd------yl~KP~~~~~L~~~v~r~l~ 1221 (1223)
++|||+.-+-.+.++..+++.+|+|. ++.+|--..++...+.+++.
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~ 285 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLK 285 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHH
Confidence 48999999999999999999999996 67789777778888877765
No 354
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=23.44 E-value=5.9e+02 Score=27.30 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhCCCCCccEEEEeCCCCCCCHH-------HHHHHHHhhhh
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTC---VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF-------QATWQIRHLEN 1153 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~---a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~-------eatr~IR~~e~ 1153 (1223)
|.+-++...........+++.|..+.. ..+..+.++.+. ...|.|+.+-.-|+..|- +..+++|++-.
T Consensus 83 v~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~--~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~ 160 (210)
T TIGR01163 83 ITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVL--PDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMID 160 (210)
T ss_pred EEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHH--hhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1154 EINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1154 ~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
+. ..++| |++.+-...+...++.+.|+|.++.
T Consensus 161 ~~------------------~~~~~-i~v~GGI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 161 EN------------------GLSIL-IEVDGGVNDDNARELAEAGADILVA 192 (210)
T ss_pred hc------------------CCCce-EEEECCcCHHHHHHHHHcCCCEEEE
No 355
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=23.36 E-value=2.2e+02 Score=31.21 Aligned_cols=92 Identities=14% Similarity=0.054 Sum_probs=50.1
Q ss_pred ccceEEEeccHHHHhhhhcccCCCCCCCcceEEEe---cccccchhhhHHHHHHHHHHHhcCCcccccCCCeEEEEeccC
Q 000920 950 LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLI---DKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSI 1026 (1223)
Q Consensus 950 lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvli---D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~ll~~s~ 1026 (1223)
.|+.+..+.+.++++..+... .++++++ |..+.+ ..|..+. +..+... ...|.+++. ...
T Consensus 16 ~~~~v~~~~~~~~~l~~~~~~-------~pd~vl~dl~d~~mp~-~~Gl~~~---~~l~~~~-----p~~~iIvlt-~~~ 78 (207)
T PRK11475 16 NPYKLHTFSSQSSFQDAMSRI-------SFSAVIFSLSAMRSER-REGLSCL---TELAIKF-----PRMRRLVIA-DDD 78 (207)
T ss_pred CeeEEEEeCCHHHHHHHhccC-------CCCEEEeeccccCCCC-CCHHHHH---HHHHHHC-----CCCCEEEEe-CCC
Confidence 566677888888888765432 3466664 333322 2344433 3333221 134444443 222
Q ss_pred Ccc-chhhhhcCCceeeecccccccccccccCC
Q 000920 1027 SET-DRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1027 ~~~-~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
.+. ........|...|+.||.....+..++..
T Consensus 79 ~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~ 111 (207)
T PRK11475 79 IEARLIGSLSPSPLDGVLSKASTLEILQQELFL 111 (207)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHH
Confidence 221 11223357888999999988888776643
No 356
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=23.23 E-value=9.3e+02 Score=27.63 Aligned_cols=110 Identities=18% Similarity=0.175 Sum_probs=57.3
Q ss_pred CCcEEEEEecChh---HHHHHHHHHhhCCCEEEEECCH-------HHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHH
Q 000920 1080 KGKQILVVDDNMV---NRRVAEGALKKHGAIVTCVDCG-------RAAVDKLTPPHNFDACFMDLQMPEMDG--FQATWQ 1147 (1223)
Q Consensus 1080 ~~~rILVVDDn~~---n~~vl~~~L~~~G~~V~~a~~G-------~eAl~~l~~~~~~DlIlmDi~MP~MDG--~eatr~ 1147 (1223)
.+++|++||-|.. .+.-+....+..|..+.....+ .+++.... ...||+||.|- |+... -....+
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~-~~~~D~ViIDT--~G~~~~d~~~~~e 175 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK-ARNIDVVLIDT--AGRLQNKVNLMDE 175 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH-HCCCCEEEEeC--CCCCcchHHHHHH
Confidence 3578999996642 3445555667778666554332 23343333 35699999996 33332 233344
Q ss_pred HHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHH----HcCCCEEEE
Q 000920 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM----KCGMDDYVS 1204 (1223)
Q Consensus 1148 IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l----~aG~ddyl~ 1204 (1223)
++++..-.+... ....+-.++++.|....++...+. ..|.++.|.
T Consensus 176 l~~~~~~~~~~~------------~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 176 LKKIKRVIKKVD------------KDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred HHHHHHHHhccc------------CCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEE
Confidence 444322110000 001234577888876655444332 256666653
No 357
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=23.09 E-value=9.9e+02 Score=27.50 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=39.0
Q ss_pred CcEEEEEecChh---HHHHHHHHHhhCCCEEEEECCHH---HHHHHhCCCCCccEEEEeCCCCCCC--HHHHHHHHHh
Q 000920 1081 GKQILVVDDNMV---NRRVAEGALKKHGAIVTCVDCGR---AAVDKLTPPHNFDACFMDLQMPEMD--GFQATWQIRH 1150 (1223)
Q Consensus 1081 ~~rILVVDDn~~---n~~vl~~~L~~~G~~V~~a~~G~---eAl~~l~~~~~~DlIlmDi~MP~MD--G~eatr~IR~ 1150 (1223)
+.++.+++=+.. ....++...+..|+.+..+.+.. ++++.+.....+|+||+|-- +.. .-+.++++++
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~--Gr~~~~~~~l~el~~ 178 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTA--GKNYRASETVEEMIE 178 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECC--CCCcCCHHHHHHHHH
Confidence 346776665432 23334555566788888877653 34444443346999999963 332 2344455544
No 358
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.01 E-value=5.2e+02 Score=29.17 Aligned_cols=82 Identities=10% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCHHHHHHHhCCCCCccEEEE-----eCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccC
Q 000920 1112 DCGRAAVDKLTPPHNFDACFM-----DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186 (1223)
Q Consensus 1112 ~~G~eAl~~l~~~~~~DlIlm-----Di~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~ 1186 (1223)
.+..+.++.+. +..+|.|+. |-.|++-| +++++++++ ..++|||+..+-.
T Consensus 155 ~~~~~~~~~l~-~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~-----------------------~~~ipvia~GGi~ 209 (254)
T TIGR00735 155 LDAVEWAKEVE-KLGAGEILLTSMDKDGTKSGYD-LELTKAVSE-----------------------AVKIPVIASGGAG 209 (254)
T ss_pred CCHHHHHHHHH-HcCCCEEEEeCcCcccCCCCCC-HHHHHHHHH-----------------------hCCCCEEEeCCCC
Q ss_pred CHHhHHHHHHcC-CCEEEE------CCCCHHHHHHHHHH
Q 000920 1187 IQASNEQCMKCG-MDDYVS------KPFEDEQLYTAVAR 1218 (1223)
Q Consensus 1187 ~~~~~~~~l~aG-~ddyl~------KP~~~~~L~~~v~r 1218 (1223)
+.++..++++.| +|+.+. +=++.+++...++.
T Consensus 210 s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~ 248 (254)
T TIGR00735 210 KPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAE 248 (254)
T ss_pred CHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHH
No 359
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=22.89 E-value=55 Score=41.44 Aligned_cols=50 Identities=32% Similarity=0.610 Sum_probs=29.9
Q ss_pred EEEEecCCCCCHHhHhh--------hcCCCccc---CCCC-CCCCCCcccHHHHHHHHHHHc
Q 000920 832 VTVEDTGVGIPLEAQVR--------IFTPFMQA---DSST-SRTYGGTGIGLSISRCLVELM 881 (1223)
Q Consensus 832 IsV~DTGiGI~~e~~~r--------LFepF~q~---d~st-sr~~gGTGLGLsI~k~LVelm 881 (1223)
|+|.|+|.|||-+..+. ||....-. +... .-..|=.|.|.+.|..|-+..
T Consensus 70 isV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~l 131 (635)
T COG0187 70 ISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTWL 131 (635)
T ss_pred EEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccceE
Confidence 89999999999876444 44332211 1111 111233588999888876543
No 360
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=22.58 E-value=8.9e+02 Score=25.21 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 571 WTAINASIGVVVITLLVGHIFHAAI 595 (1223)
Q Consensus 571 w~~~~~~i~~lvi~llv~~i~~~~i 595 (1223)
|+.++..+.++++.+++.++++..+
T Consensus 6 ~~~~~~~inF~il~~iL~~f~~kpi 30 (159)
T PRK13461 6 PTIIATIINFIILLLILKHFFFDKI 30 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444444444455555555444
No 361
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=22.58 E-value=4.1e+02 Score=22.20 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000920 583 ITLLVGHIFHAAINRIAQVE 602 (1223)
Q Consensus 583 i~llv~~i~~~~i~ri~~ve 602 (1223)
+...+|..+|..++.++..+
T Consensus 17 If~~iGl~IyQkikqIrgKk 36 (49)
T PF11044_consen 17 IFAWIGLSIYQKIKQIRGKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33445666666665554433
No 362
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=22.52 E-value=9.4e+02 Score=25.49 Aligned_cols=62 Identities=23% Similarity=0.250 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 000920 578 IGVVVITLLVGHIFHAAIN-----RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNG 639 (1223)
Q Consensus 578 i~~lvi~llv~~i~~~~i~-----ri~~ve~~~~el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~ 639 (1223)
+.++++.+++.++++..+. |-..+..+..+..+.+.++++....-..-++..--|.+.=++.
T Consensus 24 i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~ 90 (173)
T PRK13460 24 VTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAE 90 (173)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445444333 3334444445555444444443332233344443344433333
No 363
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.51 E-value=4.5e+02 Score=23.13 Aligned_cols=9 Identities=11% Similarity=0.386 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 000920 306 RARMLQDQF 314 (1223)
Q Consensus 306 ~a~~lq~~~ 314 (1223)
..+.+++++
T Consensus 56 ~l~~le~e~ 64 (68)
T PF06305_consen 56 ELKKLEKEL 64 (68)
T ss_pred HHHHHHHHH
Confidence 344444443
No 364
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=22.46 E-value=1.5e+02 Score=33.49 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=43.6
Q ss_pred cEEEEEecChhHHHHHHHHHhhCC------CEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCH
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHG------AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G------~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG 1141 (1223)
.+|-+||=++...++.+.++.... -.-....||..-++.... ..||+|++|+.-|...+
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~ 165 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE-EKYDVIIVDLTDPDGPA 165 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS-T-EEEEEEESSSTTSCG
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC-CcccEEEEeCCCCCCCc
Confidence 479999999999999999887532 223467789888876542 27999999999887655
No 365
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=22.27 E-value=2.7e+02 Score=32.32 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=49.7
Q ss_pred EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccC
Q 000920 1107 IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186 (1223)
Q Consensus 1107 ~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~ 1186 (1223)
....+.+-+||.+.+. ...|+|.+| .|+.-+=-++.+.+++.. .-.++..++..
T Consensus 192 IeVEv~tleqa~ea~~--agaDiI~LD-n~~~e~l~~av~~~~~~~-----------------------~~~~leaSGGI 245 (284)
T PRK06096 192 IVVEADTPKEAIAALR--AQPDVLQLD-KFSPQQATEIAQIAPSLA-----------------------PHCTLSLAGGI 245 (284)
T ss_pred EEEECCCHHHHHHHHH--cCCCEEEEC-CCCHHHHHHHHHHhhccC-----------------------CCeEEEEECCC
Confidence 5556778999999885 359999999 444333333443333211 12478899999
Q ss_pred CHHhHHHHHHcCCCEEEE
Q 000920 1187 IQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1187 ~~~~~~~~l~aG~ddyl~ 1204 (1223)
..+...+.-+.|+|-..+
T Consensus 246 ~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 246 NLNTLKNYADCGIRLFIT 263 (284)
T ss_pred CHHHHHHHHhcCCCEEEE
Confidence 999999999999987543
No 366
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=22.15 E-value=3.1e+02 Score=29.53 Aligned_cols=70 Identities=9% Similarity=-0.015 Sum_probs=50.9
Q ss_pred EEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCH
Q 000920 1109 TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188 (1223)
Q Consensus 1109 ~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~ 1188 (1223)
.-+.+-+|+.+.+. ..+|.|-++- ++.. |.+.++.++.. ..++|+++.-+- ..
T Consensus 102 ~gv~t~~e~~~A~~--~Gad~i~~~p-~~~~-g~~~~~~l~~~----------------------~~~~p~~a~GGI-~~ 154 (190)
T cd00452 102 PGVATPTEIMQALE--LGADIVKLFP-AEAV-GPAYIKALKGP----------------------FPQVRFMPTGGV-SL 154 (190)
T ss_pred CCcCCHHHHHHHHH--CCCCEEEEcC-Cccc-CHHHHHHHHhh----------------------CCCCeEEEeCCC-CH
Confidence 34557888887764 4589888764 4444 89988888742 124788886665 88
Q ss_pred HhHHHHHHcCCCEEEEC
Q 000920 1189 ASNEQCMKCGMDDYVSK 1205 (1223)
Q Consensus 1189 ~~~~~~l~aG~ddyl~K 1205 (1223)
+...+++++|++....-
T Consensus 155 ~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 155 DNAAEWLAAGVVAVGGG 171 (190)
T ss_pred HHHHHHHHCCCEEEEEc
Confidence 89999999999876554
No 367
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=22.01 E-value=43 Score=44.20 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=13.3
Q ss_pred EEEEecCCCCCHHhHh
Q 000920 832 VTVEDTGVGIPLEAQV 847 (1223)
Q Consensus 832 IsV~DTGiGI~~e~~~ 847 (1223)
|+|+|+|.|||-+..+
T Consensus 163 ItV~DnGRGIPvd~h~ 178 (903)
T PTZ00109 163 VEISDNGRGIPCDVSE 178 (903)
T ss_pred EEEEeCCccccccccc
Confidence 8999999999976543
No 368
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=21.75 E-value=6.9e+02 Score=26.71 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=48.4
Q ss_pred HHHHhhCCCEEEEEC---CHHHHHHHhCCCCCccEEEEeCCCCCCCHH-------HHHHHHHhhhhhhhhhhhcCCcccc
Q 000920 1098 EGALKKHGAIVTCVD---CGRAAVDKLTPPHNFDACFMDLQMPEMDGF-------QATWQIRHLENEINEQIASGESSAE 1167 (1223)
Q Consensus 1098 ~~~L~~~G~~V~~a~---~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~-------eatr~IR~~e~~~~~~i~~g~~~~~ 1167 (1223)
...+++.|..+-..- +..+.++.+.. ..|.|+.+...|+-+|. +..+++|++-.+
T Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~------------- 162 (211)
T cd00429 98 IQLIKELGMKAGVALNPGTPVEVLEPYLD--EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPE------------- 162 (211)
T ss_pred HHHHHHCCCeEEEEecCCCCHHHHHHHHh--hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHh-------------
Confidence 344455665533322 23454554432 26877777666765552 333444432110
Q ss_pred cccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEEC
Q 000920 1168 MFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205 (1223)
Q Consensus 1168 ~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~K 1205 (1223)
..+++||++.- -...+...++.++|+|.++.-
T Consensus 163 -----~~~~~pi~v~G-GI~~env~~~~~~gad~iivg 194 (211)
T cd00429 163 -----NNLNLLIEVDG-GINLETIPLLAEAGADVLVAG 194 (211)
T ss_pred -----cCCCeEEEEEC-CCCHHHHHHHHHcCCCEEEEC
Confidence 12246875544 555688999999999998864
No 369
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=21.65 E-value=9.9e+02 Score=25.81 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=55.9
Q ss_pred HHHHhhCCCEEEEEC---CHHHHHHHhCCCCCccEEEEeCCCCCCCHH----HHHHHHHhhhhhhhhhhhcCCccccccc
Q 000920 1098 EGALKKHGAIVTCVD---CGRAAVDKLTPPHNFDACFMDLQMPEMDGF----QATWQIRHLENEINEQIASGESSAEMFG 1170 (1223)
Q Consensus 1098 ~~~L~~~G~~V~~a~---~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~----eatr~IR~~e~~~~~~i~~g~~~~~~~~ 1170 (1223)
...+++.|..+-... +..+.++.+. ...|.|+++-.-|+.+|- +....+++..+..
T Consensus 102 ~~~~~~~~~~~g~~~~~~t~~e~~~~~~--~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~--------------- 164 (220)
T PRK05581 102 LQLIKSAGIKAGLVLNPATPLEPLEDVL--DLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLI--------------- 164 (220)
T ss_pred HHHHHHcCCEEEEEECCCCCHHHHHHHH--hhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHH---------------
Confidence 444556676543322 3455555543 236777666555666553 1223333221110
Q ss_pred CCCCCcc-cEEEEeccCCHHhHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHh
Q 000920 1171 NVGLWHV-PILAMTADVIQASNEQCMKCGMDDYVS-----KPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1171 ~~~~~~i-PIIalTA~~~~~~~~~~l~aG~ddyl~-----KP~~~~~L~~~v~r~l 1220 (1223)
...++ |.|++-+-...++..++.++|+|.++. +.=++.+-...+++++
T Consensus 165 --~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~~ 218 (220)
T PRK05581 165 --DERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAEL 218 (220)
T ss_pred --HhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHh
Confidence 00123 566677777788888999999997654 4445555555554443
No 370
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=21.62 E-value=1.1e+02 Score=33.41 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=36.9
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEE
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlm 1132 (1223)
|||||-....-.-+...|++.|+++....+.+..++.+.. ..||.|++
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN-MKPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh-CCCCEEEE
Confidence 8999999888888999999999999998876443444432 45887765
No 371
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=21.52 E-value=5.8e+02 Score=32.05 Aligned_cols=99 Identities=15% Similarity=0.139 Sum_probs=59.3
Q ss_pred CcEEEEEec----ChhHHHHHHHHHhhC-CCEEEE--ECCHHHHHHHhCCCCCccEEEEeC--------------CCCCC
Q 000920 1081 GKQILVVDD----NMVNRRVAEGALKKH-GAIVTC--VDCGRAAVDKLTPPHNFDACFMDL--------------QMPEM 1139 (1223)
Q Consensus 1081 ~~rILVVDD----n~~n~~vl~~~L~~~-G~~V~~--a~~G~eAl~~l~~~~~~DlIlmDi--------------~MP~M 1139 (1223)
+..++++|- .....+.++.+=+.+ +..+.. +.+.++|..... ...|.|...+ -.|
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~--aGad~I~vg~g~Gs~~~t~~~~~~g~p-- 328 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLID--AGADGLRIGMGSGSICITQEVCAVGRP-- 328 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHH--cCCCEEEECCcCCcccccchhccCCCC--
Confidence 456788874 333334444443333 344444 555667666554 3478775432 233
Q ss_pred CHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1140 DG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
.+.++..+++.-. ...+|||+=-+-....+..+|+.+|||..+.
T Consensus 329 -~~~ai~~~~~~~~--------------------~~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 329 -QASAVYHVARYAR--------------------ERGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred -hHHHHHHHHHHHh--------------------hcCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 2444444443211 1258999988888899999999999998764
No 372
>PLN02823 spermine synthase
Probab=21.47 E-value=2.2e+02 Score=33.83 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=39.7
Q ss_pred cEEEEEecChhHHHHHHHHHhhCC-----CE-EEEECCHHHHHHHhCCCCCccEEEEeCCCCC
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHG-----AI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G-----~~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~ 1138 (1223)
.+|-+||=|+...++++..+...+ -. -....||.+.++.. ...||+||+|+.-|.
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvIi~D~~dp~ 188 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVIIGDLADPV 188 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEEEecCCCcc
Confidence 479999999999999999885321 12 23355687777543 357999999986654
No 373
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=21.41 E-value=3.3e+02 Score=31.57 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=25.2
Q ss_pred cccEE--EEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1176 HVPIL--AMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1176 ~iPII--alTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
.+||| |..+-...++..+++++|+|.++.
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaV 224 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFV 224 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 58997 777777999999999999999875
No 374
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.38 E-value=3.1e+02 Score=27.19 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 268 ILVVFVLLGIAISVWLFWLLKEKMHLRRK 296 (1223)
Q Consensus 268 ~l~~~~~~~~~~s~~~~~~~~~~~~~~~~ 296 (1223)
+||+.+++|+++++++..+.......++.
T Consensus 15 lLVvl~Iigil~~~~~p~~~~~~~~~~~~ 43 (149)
T COG2165 15 LLVVLAIIGILAALALPSLQGSIDKAKRL 43 (149)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 45666667777777777666665555433
No 375
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=21.32 E-value=2.3e+02 Score=30.60 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=39.0
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhCCC-CCccEEEEeCCCC
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAI--VT-CVDCGRAAVDKLTPP-HNFDACFMDLQMP 1137 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~--V~-~a~~G~eAl~~l~~~-~~~DlIlmDi~MP 1137 (1223)
.+|..||.++.....+..-++..|+. +. ...|..+++..+... ..||+|++|--..
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFF 132 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCC
Confidence 37999999999999999988887763 33 333454555544222 3489999997554
No 376
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=21.18 E-value=95 Score=34.52 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.7
Q ss_pred EEeCHHHHHHHHHHHHHHHHhccCCC
Q 000920 731 VIGDPGRFRQIITNLVGNSIKFTQDK 756 (1223)
Q Consensus 731 v~gD~~rL~QIL~NLLsNAIKfT~~~ 756 (1223)
+-|||-|-+-|--|++.|+++++..+
T Consensus 19 mPGDPlRAK~iAetfLe~~~~vnevR 44 (236)
T COG0813 19 MPGDPLRAKYIAETFLENAVCVNEVR 44 (236)
T ss_pred cCCCCchHHHHHHHHHhhhhhhhhhc
Confidence 34999999999999999999998533
No 377
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.16 E-value=2.6e+02 Score=32.05 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=31.1
Q ss_pred cccEEEEeccC------CHHhHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 000920 1176 HVPILAMTADV------IQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217 (1223)
Q Consensus 1176 ~iPIIalTA~~------~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1217 (1223)
.+|+|.||=.+ .+.-..+|.++|+|+.+.=-...++....+.
T Consensus 91 ~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~ 138 (263)
T CHL00200 91 KAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLIS 138 (263)
T ss_pred CCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHH
Confidence 57988888653 3566889999999999987666666554443
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=21.09 E-value=8.2e+02 Score=29.11 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=39.8
Q ss_pred CcEEEEEecCh---hHHHHHHHHHhhCCCEEEEECCH-------HHHHHHhCCCCCccEEEEeCCCCCCC-HHHHHHHHH
Q 000920 1081 GKQILVVDDNM---VNRRVAEGALKKHGAIVTCVDCG-------RAAVDKLTPPHNFDACFMDLQMPEMD-GFQATWQIR 1149 (1223)
Q Consensus 1081 ~~rILVVDDn~---~n~~vl~~~L~~~G~~V~~a~~G-------~eAl~~l~~~~~~DlIlmDi~MP~MD-G~eatr~IR 1149 (1223)
+.+|++++-+. .....+...-...|..+.....| .+|++... ...+|+||.|-- +.+. -.++...++
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~-~~~~DvVLIDTa-Gr~~~~~~lm~eL~ 245 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK-ARGIDVVLIDTA-GRMHTDANLMDELK 245 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH-hCCCCEEEEECC-CccCCcHHHHHHHH
Confidence 45788887663 23344555566678777655443 24455444 356999999964 2221 234555565
Q ss_pred hh
Q 000920 1150 HL 1151 (1223)
Q Consensus 1150 ~~ 1151 (1223)
.+
T Consensus 246 ~i 247 (336)
T PRK14974 246 KI 247 (336)
T ss_pred HH
Confidence 54
No 379
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=20.86 E-value=4.8e+02 Score=26.93 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=24.9
Q ss_pred cccEEEEeccCCHHhHHHHHHcCCCEEEE
Q 000920 1176 HVPILAMTADVIQASNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1176 ~iPIIalTA~~~~~~~~~~l~aG~ddyl~ 1204 (1223)
.+||++..+-...++..+++++|+|.++.
T Consensus 170 ~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 170 KVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 57999988877779999999999998764
No 380
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=20.61 E-value=4.8e+02 Score=28.24 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=35.1
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEE
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlm 1132 (1223)
|+|||-..-|...+...|+..|+++..+.+..+ + ..+|.|++
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~~----l---~~~d~lii 42 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKE----A---ELADKLIL 42 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHHH----h---ccCCEEEE
Confidence 589999999999999999999999999997532 2 24888775
No 381
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=20.61 E-value=1.4e+02 Score=34.46 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=32.8
Q ss_pred cccEE--EEeccCCHHhHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHH
Q 000920 1176 HVPIL--AMTADVIQASNEQCMKCGMDDYVS-----KPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1176 ~iPII--alTA~~~~~~~~~~l~aG~ddyl~-----KP~~~~~L~~~v~r~ 1219 (1223)
++||| |..+-.++++...++++|+|++.. |.=++.+....+.+.
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~a 247 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEA 247 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHH
Confidence 58998 887777999999999999999864 444555555444443
No 382
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=20.59 E-value=5e+02 Score=28.51 Aligned_cols=67 Identities=7% Similarity=0.091 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCCCcc-EEEEeCCCCCC---CHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHH
Q 000920 1114 GRAAVDKLTPPHNFD-ACFMDLQMPEM---DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189 (1223)
Q Consensus 1114 G~eAl~~l~~~~~~D-lIlmDi~MP~M---DG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~ 1189 (1223)
..+.++.+.. ...| ++++|+..-++ -.+++++++++. .++||++-.+-.+.+
T Consensus 148 ~~~~~~~~~~-~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-----------------------~~ipvi~~GGi~~~~ 203 (234)
T cd04732 148 LEELAKRFEE-LGVKAIIYTDISRDGTLSGPNFELYKELAAA-----------------------TGIPVIASGGVSSLD 203 (234)
T ss_pred HHHHHHHHHH-cCCCEEEEEeecCCCccCCCCHHHHHHHHHh-----------------------cCCCEEEecCCCCHH
Confidence 3344444432 2344 56777644222 126777777642 258999999989999
Q ss_pred hHHHHHHcCCCEEEE
Q 000920 1190 SNEQCMKCGMDDYVS 1204 (1223)
Q Consensus 1190 ~~~~~l~aG~ddyl~ 1204 (1223)
+..++++.|+|+.+.
T Consensus 204 di~~~~~~Ga~gv~v 218 (234)
T cd04732 204 DIKALKELGVAGVIV 218 (234)
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999764
No 383
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=20.46 E-value=1.8e+02 Score=37.21 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=18.2
Q ss_pred EEEEEecCCCCCHHhHhhhcCCCc
Q 000920 831 LVTVEDTGVGIPLEAQVRIFTPFM 854 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFepF~ 854 (1223)
.|+|+|+|.||++...+-+-.+++
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~ 74 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHT 74 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhh
Confidence 389999999999877666544443
No 384
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=20.39 E-value=1.5e+02 Score=31.88 Aligned_cols=48 Identities=8% Similarity=-0.001 Sum_probs=34.6
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEE
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlm 1132 (1223)
|||||-....-.-+..+|++.|++++.+.+..--++.+.. ..||.|++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~~iil 49 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ-LAPSHLVI 49 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh-cCCCeEEE
Confidence 8999988888888899999999999999876422233332 34675544
No 385
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=20.29 E-value=3e+02 Score=30.28 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=28.6
Q ss_pred cccEEEEecc----------CCHHhHHHHHHcCCCEEEE-------CC--CCHHHHHHHHHH
Q 000920 1176 HVPILAMTAD----------VIQASNEQCMKCGMDDYVS-------KP--FEDEQLYTAVAR 1218 (1223)
Q Consensus 1176 ~iPIIalTA~----------~~~~~~~~~l~aG~ddyl~-------KP--~~~~~L~~~v~r 1218 (1223)
.+|||.++.. ...+...+|.++|+| ++. +| -+..++...+++
T Consensus 56 ~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad-~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 56 DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD-IIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 4688766541 235678899999999 554 45 566777777665
Done!