BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000921
(1223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 163/295 (55%), Gaps = 48/295 (16%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V ++DI +E K T+KE+V+ P+ RP++F L P KGILLFGPPGTGKT++ K +A
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIA 138
Query: 1006 TEAGANFINISMSSITSK----------------------------VDSMLGRRENPGEH 1037
+++GA F +IS SS+TSK +DS+L +R + GEH
Sbjct: 139 SQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEH 197
Query: 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 1097
E+ R++K EF+V DG T ++R+LV+ ATNRP ++DEA RRL +RL + LP+A R+
Sbjct: 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARK 257
Query: 1098 KIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXX 1156
+I+ +++KE+ S+ ++E I +D +SG+D+ LC A+ P
Sbjct: 258 QIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGP--------------I 303
Query: 1157 XXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1211
A + VRP+ DF+ A V SVS + + E WN+ +G G
Sbjct: 304 RSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYE--NWNKTFGCG 356
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 176 bits (445), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 167/306 (54%), Gaps = 48/306 (15%)
Query: 934 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 993
L+ + I + V FDDI + K L+E+V+LP RPELF L P +G+LLFGPP
Sbjct: 100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTG--LRAPARGLLLFGPP 157
Query: 994 GTGKTMLAKAVATEAGANFINISMSSITSK----------------------------VD 1025
G GKTMLAKAVA E+ A F NIS +S+TSK VD
Sbjct: 158 GNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVD 217
Query: 1026 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 1085
S+L R GEH+A R++K EF++ +DG+++ +RVLV+ ATNRP +LDEAV+RR +R
Sbjct: 218 SLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKR 276
Query: 1086 LMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXX 1144
+ V+LP+ R +++ +L K+ + +L +A M DGYSGSDL L AA P
Sbjct: 277 VYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336
Query: 1145 XXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQW 1204
S+ ++R +++ DF + +++ SVS ++ + ++W
Sbjct: 337 LKPEQVKN--------------MSASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIRW 380
Query: 1205 NELYGE 1210
N+ +G+
Sbjct: 381 NKDFGD 386
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 161/307 (52%), Gaps = 47/307 (15%)
Query: 933 KLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP 992
+L+ D I V + DI + K L+E+V+LP RPELF L P KG+LLFGP
Sbjct: 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTG--LRAPAKGLLLFGP 62
Query: 993 PGTGKTMLAKAVATEAGANFINISMSSITSK--------VDSM--LGRRENPG------- 1035
PG GKT+LA+AVATE A F+NIS +S+TSK V ++ + R P
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
Query: 1036 ----------EHEAMRKMKNEFMVNWDGL-RTKDKERVLVLAATNRPFDLDEAVVRRLPR 1084
EHEA R++K EF+V +DGL D +R++VLAATNRP +LDEA +RR +
Sbjct: 123 DSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTK 182
Query: 1085 RLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXX 1143
R+ V+LPD RE ++ +L K+ D + L +A + DGYSGSDL L AA P
Sbjct: 183 RVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP-- 240
Query: 1144 XXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQ 1203
N +R + DF + +++ SV+ +S N E +
Sbjct: 241 ------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--K 286
Query: 1204 WNELYGE 1210
W++ YG+
Sbjct: 287 WSQDYGD 293
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 121/231 (52%), Gaps = 45/231 (19%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 105
Query: 1006 TEAGANFINISMSSITSK----------------------------VDSMLGRRENPGEH 1037
TEA + F ++S S + SK VD++ G R GE
Sbjct: 106 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 164
Query: 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 1097
EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 165 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 223
Query: 1098 KIIRV-------ILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1141
+ + +L KE D + M +GYSGSD+ + A P
Sbjct: 224 TMFEINVGDTPSVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQP 268
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 121/231 (52%), Gaps = 45/231 (19%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 81
Query: 1006 TEAGANFINISMSSITSK----------------------------VDSMLGRRENPGEH 1037
TEA + F ++S S + SK VD++ G R GE
Sbjct: 82 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR-GEGES 140
Query: 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 1097
EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 141 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 199
Query: 1098 KIIRV-------ILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1141
+ + +L KE D + M +GYSGSD+ + A P
Sbjct: 200 TMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQP 244
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 121/231 (52%), Gaps = 45/231 (19%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 90
Query: 1006 TEAGANFINISMSSITSK----------------------------VDSMLGRRENPGEH 1037
TEA + F ++S S + SK VD++ G R GE
Sbjct: 91 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 149
Query: 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 1097
EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 150 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 208
Query: 1098 KIIRV-------ILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1141
+ + +L KE D + M +GYSGSD+ + A P
Sbjct: 209 TMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQP 253
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 121/231 (52%), Gaps = 45/231 (19%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 72
Query: 1006 TEAGANFINISMSSITSK----------------------------VDSMLGRRENPGEH 1037
TEA + F ++S S + SK VD++ G R GE
Sbjct: 73 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 131
Query: 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 1097
EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 132 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 190
Query: 1098 KIIRV-------ILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1141
+ + +L KE D + M +GYSGSD+ + A P
Sbjct: 191 TMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQP 235
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 124/226 (54%), Gaps = 34/226 (15%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V + D+ LE K+ LKE V+LP++ P LF G+ T P +GILLFGPPGTGK+ LAKAVA
Sbjct: 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRT-PWRGILLFGPPGTGKSYLAKAVA 188
Query: 1006 TEA-GANFINISMSSITSK----------------------------VDSMLGRRENPGE 1036
TEA + F +IS S + SK +DS+ G R + E
Sbjct: 189 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENE 247
Query: 1037 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNR 1096
EA R++K EF+V G+ D + +LVL ATN P+ LD A+ RR +R+ + LP+A R
Sbjct: 248 SEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR 306
Query: 1097 EKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1141
+ R+ L + + ++ D + + DGYSG+D+ + A P
Sbjct: 307 AAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQP 352
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 35/225 (15%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1006 TEAGANFINISMSSITS----------------------------KVDSMLGRR--ENPG 1035
E ANFI+I + + ++DS+ R
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 1093
A ++ N+ + DG+ T K+ V ++ ATNRP +D A++R RL + + + LPD
Sbjct: 593 GGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 1094 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
+R I++ L K +A DVDLE +A M +G+SG+DL +C A
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 34/223 (15%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V +DD+G +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1006 TEAGANFINISMSSITSKV----------------------------DSMLGRRENPGEH 1037
E GA F I+ I SK+ D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 1095
E R++ ++ + DGL K + V+V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1096 REKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
R +I+++ +LA DVDLE +AN G+ G+DL LC AA
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 35/225 (15%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1006 TEAGANFINISMSSITS----------------------------KVDSMLGRR--ENPG 1035
E ANFI+I + + ++DS+ R
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 1093
A ++ N+ + DG+ T K+ V ++ ATNRP +D A++R RL + + + LPD
Sbjct: 593 GGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 1094 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
+R I++ L K +A DVDLE +A M +G+SG+DL +C A
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 120/223 (53%), Gaps = 34/223 (15%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1006 TEAGANFINISMSSITSKV----------------------------DSMLGRRENPGEH 1037
E GA F I+ I SK+ D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 1095
E R++ ++ + DGL K + V+V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1096 REKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
R +I+++ +LA DVDLE +AN G+ G+DL LC AA
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 35/225 (15%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 70
Query: 1006 TEAGANFINISMSSITS----------------------------KVDSMLGRR--ENPG 1035
E ANFI+I + + ++DS+ R
Sbjct: 71 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130
Query: 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 1093
A ++ N+ + DG+ T K+ V ++ ATNRP +D A++R RL + + + LPD
Sbjct: 131 GGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188
Query: 1094 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
+R I++ L K +A DVDLE +A M +G+SG+DL +C A
Sbjct: 189 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 233
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 129 bits (325), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 121/226 (53%), Gaps = 34/226 (15%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V + D+ LE K+ LKE V+LP++ P LF G+ T P +GILLFGPPGTGK+ LAKAVA
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRT-PWRGILLFGPPGTGKSYLAKAVA 66
Query: 1006 TEA-GANFINISMSSITSK----------------------------VDSMLGRRENPGE 1036
TEA + F +IS S + SK +DS+ G R E
Sbjct: 67 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NE 125
Query: 1037 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNR 1096
EA R++K EF+V G+ D + +LVL ATN P+ LD A+ RR +R+ + LP+ R
Sbjct: 126 SEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHAR 184
Query: 1097 EKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1141
+ ++ L + + ++ D + DGYSG+D+ + A P
Sbjct: 185 AAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQP 230
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 129 bits (325), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 141/294 (47%), Gaps = 43/294 (14%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1006 TEAGANFINISMSSITSKV----------------------------DSMLGRRENPGEH 1037
E GA F I+ I SK+ D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 1095
E R++ ++ + DGL K + V+V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1096 REKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXX 1155
R +I+++ +LA DVDLE +AN G+ G+DL LC AA
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA------LQAIRKKMDLI 430
Query: 1156 XXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1209
+ +S+ V MDDF++A Q S E+ + W ++ G
Sbjct: 431 DLEDETIDAEVMNSLAV---TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 141/294 (47%), Gaps = 43/294 (14%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1006 TEAGANFINISMSSITSKV----------------------------DSMLGRRENPGEH 1037
E GA F I+ I SK+ D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 1095
E R++ ++ + DGL K + V+V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1096 REKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXX 1155
R +I+++ +LA DVDLE +AN G+ G+DL LC AA
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA------LQAIRKKMDLI 430
Query: 1156 XXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1209
+ +S+ V MDDF++A Q S E+ + W ++ G
Sbjct: 431 DLEDETIDAEVMNSLAV---TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 141/294 (47%), Gaps = 43/294 (14%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1006 TEAGANFINISMSSITSKV----------------------------DSMLGRRENPGEH 1037
E GA F I+ I SK+ D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 1095
E R++ ++ + DGL K + V+V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1096 REKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXX 1155
R +I+++ +LA DVDLE +AN G+ G+DL LC AA
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA------LQAIRKKMDLI 430
Query: 1156 XXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1209
+ +S+ V MDDF++A Q S E+ + W ++ G
Sbjct: 431 DLEDETIDAEVMNSLAV---TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of
Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 34/223 (15%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V +DD+G +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1006 TEAGANFINISMSSITSKV----------------------------DSMLGRRENPGEH 1037
E GA F I+ I SK+ D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 1095
E R++ ++ + DGL K + V+V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1096 REKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
R +I+++ +LA DVDLE +AN G+ G+DL LC AA
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 38/226 (16%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
+TFD IG L L+E++ LPL+ PE+F + + KP KG+LL+GPPGTGKT+LAKAVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 1006 TEAGANFINISMSSITSK----------------------------VDSMLGRRENPG-- 1035
GANFI S I K VD++ GRR + G
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 1036 -EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 1092
+ E R + E + DG + ++++ ATNRP LD A++R RL R++ + LP+
Sbjct: 297 ADREIQRTLM-ELLTQMDGFDNLGQTKIIM--ATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Query: 1093 APNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
R +I ++ AK + + D E M+DG++G+D++N C T A
Sbjct: 354 EAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRN-CATEA 398
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
Length = 285
Score = 122 bits (307), Expect = 1e-27, Method: Composition-based stats.
Identities = 83/226 (36%), Positives = 118/226 (52%), Gaps = 37/226 (16%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V ++DIG LE ++E+V LPL+ PELF K + P KGILL+GPPGTGKT+LAKAVA
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPP-KGILLYGPPGTGKTLLAKAVA 72
Query: 1006 TEAGANFINISMSSITSK----------------------------VDSMLGRRENP--- 1034
TE A FI + S + K +D++ +R +
Sbjct: 73 TETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG 132
Query: 1035 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 1092
G+ E R + + + DG + V ++ ATNRP LD A++R R R + V PD
Sbjct: 133 GDREVQRTLM-QLLAEMDGFDARGD--VKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 1093 APNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
R +I+++ K LA DV+LE IA M +G G++LK +C A
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAG 235
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 122/230 (53%), Gaps = 39/230 (16%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VT+ DIGALE++++ L ++ P++ P+ F L P G+LL GPPG GKT+LAKAVA
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVA 65
Query: 1006 TEAGANFINISMSSITS----------------------------KVDSMLGRRENPGEH 1037
E+G NFI++ + + +VD++ RR + E
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD-RET 124
Query: 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 1095
A ++ N+ + DGL + ++V ++AATNRP +D A++R RL + L V LP +
Sbjct: 125 GASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182
Query: 1096 REKIIRVIL---AKEELASDVDLEGIAN--MADGYSGSDLKNLCVTAAHC 1140
R I++ I K L +DV+LE IA D Y+G+DL L A+ C
Sbjct: 183 RLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASIC 232
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 120/232 (51%), Gaps = 38/232 (16%)
Query: 940 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 999
P + VTF D+G E + LKE+V L+ P F + P KGILL GPPGTGKT+
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGKTL 64
Query: 1000 LAKAVATEAGANFINISMSSITS----------------------------KVDSMLGRR 1031
LA+AVA EA F +IS S ++D+ +GR
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA-VGRH 123
Query: 1032 ENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL 1086
G H+ + N+ +V DG +K E ++V+AATNRP LD A++R R +++
Sbjct: 124 RGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKI 181
Query: 1087 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
+V+ PD R+KI+ + + LA DV+LE IA G+ G+DL+NL AA
Sbjct: 182 VVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAA 233
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 38/232 (16%)
Query: 940 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 999
P + VTF D+G E + LKE+V L+ P F + P KGILL GPPGTG T+
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGATL 64
Query: 1000 LAKAVATEAGANFINISMSSITS----------------------------KVDSMLGRR 1031
LA+AVA EA F +IS S ++D+ +GR
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA-VGRH 123
Query: 1032 ENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL 1086
G H+ + N+ +V DG +K E ++V+AATNRP LD A++R R +++
Sbjct: 124 RGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKI 181
Query: 1087 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
+V+ PD R+KI+ + + LA DV+LE IA G+ G+DL+NL AA
Sbjct: 182 VVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAA 233
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 110 bits (275), Expect = 4e-24, Method: Composition-based stats.
Identities = 83/227 (36%), Positives = 116/227 (51%), Gaps = 36/227 (15%)
Query: 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 1003
I TF D+ + K+ + ELV L+ P F K P KG+L+ GPPGTGKT+LAKA
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKA 64
Query: 1004 VATEAGANFINISMSSIT--------SKVDSM-------------------LGRRENPG- 1035
+A EA F IS S S+V M +GR+ G
Sbjct: 65 IAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL 124
Query: 1036 --EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLP 1091
H+ + N+ +V DG + E ++V+AATNRP LD A++R R R+++V LP
Sbjct: 125 GGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 182
Query: 1092 DAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
D RE+I++V + + LA D+D IA G+SG+DL NL AA
Sbjct: 183 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 229
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 37/225 (16%)
Query: 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006
++ DIG LE+ +KE V LPL PEL+ + + KP KG++L+G PGTGKT+LAKAVA
Sbjct: 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVAN 238
Query: 1007 EAGANFINISMSSITSK----------------------------VDSMLGRRENP---G 1035
+ A F+ I S + K +D++ +R + G
Sbjct: 239 QTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG 298
Query: 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 1093
E E R M E + DG D+ V V+ ATN+ LD A++R R+ R+++ PD
Sbjct: 299 EREIQRTML-ELLNQLDGF--DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDL 355
Query: 1094 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
++KI+ + +K L+ DV+LE + D SG+D++ +C A
Sbjct: 356 STKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAG 400
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 36/226 (15%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V F D+ E K+ + E+V L+ PE + P KG+LL GPPGTGKT+LAKAVA
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAKAVA 65
Query: 1006 TEA--------GANFINISMSSITSKVDSML--GRRENPG-----EHEAMRKMK------ 1044
EA G++FI + + S+V + +++ P E +A+ K +
Sbjct: 66 GEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125
Query: 1045 ----------NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 1092
N+ + DG +++ V+VLAATNRP LD A++R R R+++V+ PD
Sbjct: 126 SGNDEREQTLNQLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 1093 APNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
R +I++V + +LA+DV+L+ +A + G +G+DL N+ AA
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAA 230
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 41/238 (17%)
Query: 934 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 993
++ + +P S T+D +G L +KE++ LP++ PELF + +P KG++L+GPP
Sbjct: 137 MMVEKVPDS----TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPP 191
Query: 994 GTGKTMLAKAVATEAGANFINISMSSITSKVDS----------MLGRRENP--------- 1034
GTGKT+LA+AVA FI +S + + K ++ R P
Sbjct: 192 GTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251
Query: 1035 ------------GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR-- 1080
G+ E R M E + DG T + + ++ ATNR LD A++R
Sbjct: 252 SIGSTRVEGSGGGDSEVQRTML-ELLNQLDGFET--SKNIKIIMATNRLDILDPALLRPG 308
Query: 1081 RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
R+ R++ P R +I+R+ K L ++L +A +G SG+D+K +C A
Sbjct: 309 RIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAG 366
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 37/226 (16%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VT+ D+G ++ + L+E+V LPL PE F + P KGILL+GPPGTGKT+ A+AVA
Sbjct: 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPP-KGILLYGPPGTGKTLCARAVA 264
Query: 1006 TEAGANFINISMSSITSK----------------------------VDSMLGRRENP--- 1034
A FI + S + K +D++ G R +
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG 324
Query: 1035 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 1092
G++E R M E + DG + + V+ ATNRP LD A++R R+ R++ +LPD
Sbjct: 325 GDNEVQRTML-ELITQLDGFDPRGN--IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPD 381
Query: 1093 APNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
R I R+ + + E I+ + +G++L+++C A
Sbjct: 382 LEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAG 427
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 115/230 (50%), Gaps = 39/230 (16%)
Query: 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 1003
+GV+F D+ + K ++E V L+ PE F + P KG LL GPPG GKT+LAKA
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKA 58
Query: 1004 VATE--------AGANFINISMSSITSKVDSML--GRRENP-----GEHEAMRKMK---- 1044
VATE AGA F+ + ++V S+ R P E +A+ K +
Sbjct: 59 VATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM 118
Query: 1045 ------------NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNL 1090
N+ +V DG+ T D V+VLA+TNR LD A++R RL R + ++L
Sbjct: 119 SGFSNTEEEQTLNQLLVEMDGMGTTD--HVIVLASTNRADILDGALMRPGRLDRHVFIDL 176
Query: 1091 PDAPNREKIIRVILAKEEL--ASDVDLEGIANMADGYSGSDLKNLCVTAA 1138
P R +I L +L +S + +A + G+SG+D+ N+C AA
Sbjct: 177 PTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAA 226
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 37/224 (16%)
Query: 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006
T+ D+G L+ + L E ++LP++R + F + P KG L++GPPGTGKT+LA+A A
Sbjct: 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLARACAA 237
Query: 1007 EAGANFINISMSSITS----------------------------KVDSMLGRR---ENPG 1035
+ A F+ ++ + ++D++ +R E G
Sbjct: 238 QTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG 297
Query: 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 1093
+ E R M E + DG + D RV VLAATNR LD A++R RL R++ LP
Sbjct: 298 DREVQRTML-ELLNQLDGFSSDD--RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSE 354
Query: 1094 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 1137
+R +I+++ K D++ + +A D ++G+ LK + V A
Sbjct: 355 DSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEA 398
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 111/239 (46%), Gaps = 48/239 (20%)
Query: 935 LADVIPP------SDIG------VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTK 982
L D++PP S +G VT+ D+G L+ K ++E V LPL + +L+ + +
Sbjct: 146 LVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-D 204
Query: 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK------------------- 1023
P +G+LL+GPPGTGKTML KAVA A FI ++ S K
Sbjct: 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264
Query: 1024 ---------VDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1072
VDS+ +R G ++++ E + DG V V+ ATNR
Sbjct: 265 APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF--DQSTNVKVIMATNRAD 322
Query: 1073 DLDEAVVR--RLPRRLMV-NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1128
LD A++R RL R++ +L D R I I +K LA + DL+ + D SG+
Sbjct: 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGA 381
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 36/216 (16%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 94
Query: 1006 TEA--------GANFINISMSSITSKVDSML--GRRENP--------------------G 1035
EA G++F+ + + ++V + +R P G
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 154
Query: 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 1093
++ + N+ +V DG KD ++V+AATNRP LD A++R R R++ ++ PD
Sbjct: 155 GNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 212
Query: 1094 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1129
RE+I+R+ + LA DVDL +A G+ G+D
Sbjct: 213 KGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 36/216 (16%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 70
Query: 1006 TEA--------GANFINISMSSITSKVDSML--GRRENP--------------------G 1035
EA G++F+ + + ++V + +R P G
Sbjct: 71 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 130
Query: 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 1093
++ + N+ +V DG KD ++V+AATNRP LD A++R R R++ ++ PD
Sbjct: 131 GNDEREQTLNQLLVEMDGFE-KDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 188
Query: 1094 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1129
RE+I+R+ + LA DVDL +A G+ G+D
Sbjct: 189 KGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
Length = 499
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 36/216 (16%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 85
Query: 1006 TEA--------GANFINISMSSITSKVDSML--GRRENP--------------------G 1035
EA G++F+ + + ++V + +R P G
Sbjct: 86 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 145
Query: 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 1093
++ + N+ +V DG KD ++V+AATNRP LD A++R R R++ ++ PD
Sbjct: 146 GNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 203
Query: 1094 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1129
RE+I+R+ + LA DVDL +A G+ G+D
Sbjct: 204 KGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
Length = 508
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 36/216 (16%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 94
Query: 1006 TEA--------GANFINISMSSITSKVDSML--GRRENP--------------------G 1035
EA G++F+ + + ++V + +R P G
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 154
Query: 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 1093
++ + N+ +V DG KD ++V+AATNRP LD A++R R R++ ++ PD
Sbjct: 155 GNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 212
Query: 1094 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1129
RE+I+R+ + LA DVDL +A G+ G+D
Sbjct: 213 KGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
Length = 543
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 973 ELFCKGQLTKPCKG--ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGR 1030
E +LTK KG + L GPPG GKT LAK++A G F+ IS+ + + + R
Sbjct: 95 EYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154
Query: 1031 RENPG 1035
R G
Sbjct: 155 RTYVG 159
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANF 1012
+P + +LLFGPPG GKT LA +A E G N
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANF 1012
+P + +LLFGPPG GKT LA +A E G N
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANF 1012
+P + +LLFGPPG GKT LA +A E G N
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSM 1027
++L+GPPGTGKT LA+ +A A A+ I S++TS V +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERI--SAVTSGVKEI 91
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 985 KGILLFGPPGTGKTMLAKAVATEAGANF 1012
+ +LL GPPGTGKT LA A+A E G+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 985 KGILLFGPPGTGKTMLAKAVATEAGANF 1012
+ +LL GPPGTGKT LA A+A E G+
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 975 FCKGQLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------ 1022
+ + QL +P K IL+ GP G GKT +A+ +A A A FI + + T
Sbjct: 35 WRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
Query: 1023 KVDSML 1028
+VDS++
Sbjct: 95 EVDSII 100
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
Length = 442
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------KVDSML 1028
K IL+ GP G GKT +A+ +A A A FI + + T +VDS++
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII 99
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------KVDSML 1028
K IL+ GP G GKT +A+ +A A A FI + + T +VDS++
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII 106
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------KVDSML 1028
K IL+ GP G GKT +A+ +A A A FI + + T +VDS++
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII 100
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 968 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015
PL PE ILL G PG GKT L K +A+++G +IN+
Sbjct: 2 PLGSPEFML-------LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015
ILL G PG GKT L K +A+++G +IN+
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 975 FCKGQLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------ 1022
+ + QL +P K IL GP G GKT +A+ +A A A FI + + T
Sbjct: 35 WRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
Query: 1023 KVDSML 1028
+VDS++
Sbjct: 95 EVDSII 100
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRRENPGEHEAMRK 1042
P +LL GPP +GKT LA +A E+ FI I D M+G E + +AM+K
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP------DKMIGFSET-AKCQAMKK 114
Query: 1043 M 1043
+
Sbjct: 115 I 115
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRRENPGEHEAMRK 1042
P +LL GPP +GKT LA +A E+ FI I D M+G E + +AM+K
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP------DKMIGFSET-AKCQAMKK 115
Query: 1043 M 1043
+
Sbjct: 116 I 116
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 979 QLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------KVDS 1026
QL +P K IL+ GP G GKT +A+ +A A A FI + + T +VDS
Sbjct: 39 QLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDS 98
Query: 1027 ML 1028
++
Sbjct: 99 II 100
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023
+ +L+GPPG GKT A VA E G + + + S + SK
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 985 KGILLFGPPGTGKTMLA-KAVATEAGANF--INISMSSITSKVDSMLGRREN 1033
+GI+L GPPG+GKTM+ A+ + + IN S + T + S L R N
Sbjct: 1049 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTN 1100
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 985 KGILLFGPPGTGKTMLA-KAVATEAGANF--INISMSSITSKVDSMLGRREN 1033
+GI+L GPPG+GKTM+ A+ + + IN S + T + S L R N
Sbjct: 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTN 1319
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 943 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 997 KTMLAKAVATEAGANF 1012
KT LA +A+E N
Sbjct: 64 KTTLAHIIASELQTNI 79
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 987 ILLFGPPGTGKTMLAKAVATE-AGANFINISM 1017
+L +GPPGTGKT A+A E G N+ N+ +
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant In Complex With Manganese
Length = 1155
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 33/146 (22%)
Query: 543 ESSRTEKASMFAKRAALLQHRK-PTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKK 601
ES KASM A + ++++ P SS + + V +A+ E S ++ F
Sbjct: 1012 ESDSLTKASMAAVESEIIKYVSLPDSSEQKKLA---KVPREAILNAESSYVLLRSQRFHL 1068
Query: 602 GDRVKFV---GNV---TSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEG 655
GDRV ++ G V + GT V T G + I V FD I G
Sbjct: 1069 GDRVMYIQDSGKVPLHSKGTVVGYTSIGKNVS----------------IQVLFDNEIIAG 1112
Query: 656 NNLGGFCEDDHGFFCTASSLRLDSSL 681
NN GG + G L LDSS
Sbjct: 1113 NNFGGRLQTRRG-------LGLDSSF 1131
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch Migration
Motor
Length = 334
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 943 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 997 KTMLAKAVATEAGANF 1012
KT LA +A+E N
Sbjct: 64 KTTLAHIIASELQTNI 79
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 943 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 997 KTMLAKAVATEAGANF 1012
KT LA +A+E N
Sbjct: 64 KTTLAHIIASELQTNI 79
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 943 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 997 KTMLAKAVATEAGANF 1012
KT LA +A+E N
Sbjct: 64 KTTLAHIIASELQTNI 79
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 943 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 997 KTMLAKAVATEAGANF 1012
KT LA +A+E N
Sbjct: 64 KTTLAHIIASELQTNI 79
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 974 LFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITSKVDSMLGRRE 1032
L+ +G +++P I++ GP GTGK+ L K + E +F ++ ++ T + + G+
Sbjct: 10 LYFQGSMSRP---IVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDY 66
Query: 1033 NPGEHEAMRKM-KNEFMVNW 1051
N + + M KN + W
Sbjct: 67 NFVSVDEFKSMIKNNEFIEW 86
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 943 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 997 KTMLAKAVATEAGANF 1012
+T LA +A+E N
Sbjct: 64 RTTLAHIIASELQTNI 79
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144 From
Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 974 LFCKGQLT-KPCKGILLFGPPGTGKTMLAKAVATEAGANF 1012
L+ + +T +P + +++ G G+GKT +A VA E G F
Sbjct: 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|3L0G|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
Length = 300
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 399 DISGGISKILDEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPY 458
++SG KI R+ L+ D+ +V I ++++D+L +G+L +N S S
Sbjct: 139 EVSGTKVKI-RSTRKTTPGLRMLDKYSVCIGGG-ESYRDNLCDGVLIKDNHIASCGSITL 196
Query: 459 YLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEI 505
+ + KN + + Y+ ++C+N ++ L ILL + SEI
Sbjct: 197 AIQRLRKN--LKNEYIAIECDNISQVEESLSNNVDMILLDNMSISEI 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,615,710
Number of Sequences: 62578
Number of extensions: 1368600
Number of successful extensions: 2534
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2366
Number of HSP's gapped (non-prelim): 107
length of query: 1223
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1113
effective length of database: 8,089,757
effective search space: 9003899541
effective search space used: 9003899541
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)