Query 000921
Match_columns 1223
No_of_seqs 494 out of 3017
Neff 5.1
Searched_HMMs 46136
Date Tue Apr 2 00:45:22 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0737 AAA+-type ATPase [Post 100.0 2.9E-54 6.4E-59 482.3 27.0 352 856-1214 4-386 (386)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 9.9E-50 2.2E-54 462.2 37.7 361 799-1195 350-777 (802)
3 KOG0730 AAA+-type ATPase [Post 100.0 9.1E-49 2E-53 460.9 29.8 365 702-1194 275-681 (693)
4 KOG0736 Peroxisome assembly fa 100.0 9.9E-45 2.2E-49 429.1 30.9 407 690-1196 479-941 (953)
5 COG1222 RPT1 ATP-dependent 26S 100.0 3.4E-44 7.4E-49 399.6 21.6 220 942-1190 144-395 (406)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 4.2E-44 9E-49 415.6 21.4 270 944-1216 185-522 (802)
7 KOG0738 AAA+-type ATPase [Post 100.0 7.3E-44 1.6E-48 398.3 19.9 257 941-1210 204-490 (491)
8 TIGR01243 CDC48 AAA family ATP 100.0 2.9E-40 6.2E-45 411.3 33.8 417 690-1209 260-730 (733)
9 KOG0739 AAA+-type ATPase [Post 100.0 1E-38 2.2E-43 347.0 14.5 272 935-1212 119-439 (439)
10 COG0464 SpoVK ATPases of the A 100.0 6E-36 1.3E-40 357.3 31.7 321 796-1192 136-488 (494)
11 KOG0735 AAA+-type ATPase [Post 100.0 2.7E-36 5.8E-41 354.9 27.8 299 800-1149 563-893 (952)
12 CHL00195 ycf46 Ycf46; Provisio 100.0 5.3E-34 1.1E-38 338.8 34.8 383 690-1209 68-485 (489)
13 KOG0734 AAA+-type ATPase conta 100.0 4.4E-35 9.5E-40 336.4 18.4 222 942-1194 297-548 (752)
14 KOG0652 26S proteasome regulat 100.0 2.1E-34 4.5E-39 308.8 16.1 219 942-1189 164-414 (424)
15 KOG0731 AAA+-type ATPase conta 100.0 3.7E-34 7.9E-39 346.5 20.1 238 941-1208 303-578 (774)
16 KOG0727 26S proteasome regulat 100.0 4.3E-34 9.2E-39 305.3 17.9 238 919-1187 127-396 (408)
17 KOG0740 AAA+-type ATPase [Post 100.0 6.6E-34 1.4E-38 328.5 15.2 252 943-1212 147-427 (428)
18 KOG0730 AAA+-type ATPase [Post 100.0 1.1E-33 2.3E-38 334.0 17.3 237 945-1218 181-447 (693)
19 PTZ00454 26S protease regulato 100.0 2.9E-32 6.3E-37 317.6 22.9 220 942-1190 138-389 (398)
20 KOG0728 26S proteasome regulat 100.0 1.3E-32 2.8E-37 293.8 17.4 217 944-1189 142-390 (404)
21 KOG0726 26S proteasome regulat 100.0 2.5E-33 5.4E-38 304.3 12.2 218 943-1189 179-428 (440)
22 KOG0741 AAA+-type ATPase [Post 100.0 4.1E-32 8.9E-37 311.9 17.8 257 800-1102 391-684 (744)
23 KOG0729 26S proteasome regulat 100.0 4.2E-32 9.2E-37 291.7 14.7 221 942-1191 170-422 (435)
24 PRK03992 proteasome-activating 100.0 3.7E-31 8E-36 308.1 22.7 224 942-1194 124-379 (389)
25 COG1223 Predicted ATPase (AAA+ 100.0 5.2E-31 1.1E-35 283.3 17.0 215 945-1192 117-360 (368)
26 COG0465 HflB ATP-dependent Zn 100.0 7.4E-31 1.6E-35 313.6 18.4 236 943-1208 144-415 (596)
27 PTZ00361 26 proteosome regulat 100.0 2.9E-30 6.4E-35 303.2 22.1 219 943-1190 177-427 (438)
28 TIGR01241 FtsH_fam ATP-depende 100.0 1.3E-29 2.8E-34 303.4 21.6 240 941-1210 47-318 (495)
29 TIGR01243 CDC48 AAA family ATP 100.0 1.5E-29 3.3E-34 315.5 21.4 262 944-1216 173-464 (733)
30 TIGR01242 26Sp45 26S proteasom 100.0 1.7E-28 3.6E-33 283.2 22.6 217 942-1187 115-363 (364)
31 TIGR03689 pup_AAA proteasome A 100.0 3.3E-27 7.1E-32 281.2 24.6 244 942-1212 175-502 (512)
32 CHL00176 ftsH cell division pr 100.0 1.8E-27 4E-32 290.8 20.8 215 943-1187 177-423 (638)
33 KOG0651 26S proteasome regulat 100.0 1.7E-28 3.6E-33 269.7 10.3 214 945-1187 128-373 (388)
34 PRK10733 hflB ATP-dependent me 99.9 2.5E-26 5.5E-31 282.5 22.3 222 942-1193 145-398 (644)
35 KOG0741 AAA+-type ATPase [Post 99.9 5.1E-27 1.1E-31 270.2 12.1 236 945-1194 215-497 (744)
36 KOG0732 AAA+-type ATPase conta 99.9 2.6E-26 5.5E-31 284.6 16.7 232 943-1195 259-533 (1080)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 6.5E-25 1.4E-29 280.8 18.3 164 973-1144 1620-1860(2281)
38 PLN00020 ribulose bisphosphate 99.9 1.3E-21 2.8E-26 222.6 17.5 192 947-1145 113-355 (413)
39 KOG0736 Peroxisome assembly fa 99.9 5.3E-22 1.2E-26 237.1 13.1 222 985-1216 432-683 (953)
40 KOG0735 AAA+-type ATPase [Post 99.8 3.4E-18 7.4E-23 203.2 13.6 233 949-1215 408-677 (952)
41 TIGR02639 ClpA ATP-dependent C 99.8 2.2E-16 4.8E-21 197.8 30.3 370 694-1144 264-714 (731)
42 PRK11034 clpA ATP-dependent Cl 99.7 2.3E-16 4.9E-21 196.9 28.8 371 690-1144 267-718 (758)
43 COG0542 clpA ATP-binding subun 99.7 1.9E-16 4.1E-21 194.8 25.1 355 692-1106 250-707 (786)
44 KOG0743 AAA+-type ATPase [Post 99.7 6.4E-17 1.4E-21 187.2 16.9 207 940-1150 193-432 (457)
45 CHL00181 cbbX CbbX; Provisiona 99.7 2.2E-16 4.9E-21 177.8 17.6 214 950-1182 24-281 (287)
46 COG0464 SpoVK ATPases of the A 99.7 1.8E-16 3.8E-21 190.4 17.5 221 967-1215 2-252 (494)
47 KOG0742 AAA+-type ATPase [Post 99.7 1.6E-16 3.6E-21 179.9 14.9 179 947-1135 353-586 (630)
48 KOG0744 AAA+-type ATPase [Post 99.7 1.3E-16 2.9E-21 177.1 10.8 167 938-1106 131-342 (423)
49 TIGR02880 cbbX_cfxQ probable R 99.7 9.4E-16 2E-20 172.5 16.5 212 950-1183 23-281 (284)
50 TIGR02881 spore_V_K stage V sp 99.6 1.2E-15 2.6E-20 169.1 14.6 191 948-1147 5-244 (261)
51 TIGR03345 VI_ClpV1 type VI sec 99.6 1.6E-13 3.5E-18 174.2 30.4 186 950-1144 567-833 (852)
52 CHL00095 clpC Clp protease ATP 99.6 1.3E-12 2.7E-17 166.2 32.0 384 702-1144 269-784 (821)
53 TIGR03346 chaperone_ClpB ATP-d 99.6 5.6E-13 1.2E-17 169.9 28.5 189 949-1145 565-829 (852)
54 TIGR00635 ruvB Holliday juncti 99.5 1.6E-13 3.4E-18 154.6 19.1 175 947-1140 2-208 (305)
55 PF00004 AAA: ATPase family as 99.5 3.7E-14 8.1E-19 138.3 10.3 102 987-1090 1-132 (132)
56 PRK10865 protein disaggregatio 99.5 5.4E-12 1.2E-16 160.8 31.7 188 949-1144 568-831 (857)
57 PRK00080 ruvB Holliday junctio 99.5 5.1E-13 1.1E-17 152.9 19.6 186 946-1141 22-230 (328)
58 PF05496 RuvB_N: Holliday junc 99.5 2.7E-13 6E-18 146.9 13.0 180 946-1135 21-223 (233)
59 TIGR00763 lon ATP-dependent pr 99.4 2.1E-12 4.6E-17 163.2 17.6 179 950-1145 321-558 (775)
60 TIGR02902 spore_lonB ATP-depen 99.4 7.6E-12 1.6E-16 152.1 21.1 197 946-1185 62-330 (531)
61 KOG2004 Mitochondrial ATP-depe 99.4 7.9E-12 1.7E-16 150.3 15.6 184 950-1156 412-648 (906)
62 PRK14962 DNA polymerase III su 99.4 2.5E-11 5.3E-16 145.6 20.0 161 945-1124 10-210 (472)
63 COG2256 MGS1 ATPase related to 99.3 1.9E-11 4.2E-16 140.4 17.3 158 946-1124 21-204 (436)
64 TIGR02639 ClpA ATP-dependent C 99.3 6.4E-12 1.4E-16 158.0 14.6 159 946-1128 179-387 (731)
65 PRK14956 DNA polymerase III su 99.3 2.5E-11 5.4E-16 144.5 16.4 174 945-1137 14-226 (484)
66 PRK12323 DNA polymerase III su 99.3 1.9E-11 4.1E-16 148.9 15.4 174 945-1137 12-229 (700)
67 PRK04195 replication factor C 99.3 3E-11 6.5E-16 145.4 16.8 173 945-1138 10-204 (482)
68 PRK07003 DNA polymerase III su 99.3 3E-11 6.5E-16 148.7 16.9 175 945-1138 12-225 (830)
69 PRK14961 DNA polymerase III su 99.3 9.8E-11 2.1E-15 136.3 20.1 175 945-1138 12-225 (363)
70 PF05673 DUF815: Protein of un 99.3 8.6E-11 1.9E-15 129.0 16.9 172 945-1134 23-242 (249)
71 PRK14960 DNA polymerase III su 99.3 8.2E-11 1.8E-15 143.7 17.6 174 945-1138 11-224 (702)
72 PRK14964 DNA polymerase III su 99.3 1.1E-10 2.3E-15 140.2 18.2 176 945-1139 9-223 (491)
73 PRK14958 DNA polymerase III su 99.2 1.3E-10 2.9E-15 140.5 18.3 175 945-1138 12-225 (509)
74 PRK06645 DNA polymerase III su 99.2 1.5E-10 3.3E-15 139.7 18.5 176 945-1139 17-235 (507)
75 COG0466 Lon ATP-dependent Lon 99.2 7.6E-11 1.7E-15 142.8 15.7 226 950-1210 324-611 (782)
76 COG2255 RuvB Holliday junction 99.2 2E-10 4.4E-15 127.3 17.4 162 945-1125 22-216 (332)
77 PRK07940 DNA polymerase III su 99.2 1.3E-10 2.7E-15 136.7 15.8 176 947-1135 3-216 (394)
78 PRK07994 DNA polymerase III su 99.2 1.7E-10 3.7E-15 142.1 17.4 174 945-1137 12-224 (647)
79 PRK14949 DNA polymerase III su 99.2 1.5E-10 3.2E-15 145.0 16.5 174 945-1138 12-225 (944)
80 TIGR02397 dnaX_nterm DNA polym 99.2 2.7E-10 6E-15 130.6 17.5 175 945-1138 10-223 (355)
81 TIGR03420 DnaA_homol_Hda DnaA 99.2 5.6E-10 1.2E-14 120.1 18.1 170 946-1139 12-207 (226)
82 PRK05563 DNA polymerase III su 99.2 3.9E-10 8.5E-15 138.0 18.9 173 945-1137 12-224 (559)
83 PRK00411 cdc6 cell division co 99.2 7.2E-10 1.6E-14 129.2 19.2 205 948-1191 29-286 (394)
84 PRK14963 DNA polymerase III su 99.2 3.7E-10 8E-15 136.6 17.0 173 945-1136 10-220 (504)
85 PRK13342 recombination factor 99.2 4.1E-10 8.9E-15 133.2 16.9 171 946-1138 9-201 (413)
86 PRK08691 DNA polymerase III su 99.2 2.3E-10 4.9E-15 140.9 15.1 176 945-1139 12-226 (709)
87 PRK08903 DnaA regulatory inact 99.2 1.2E-09 2.6E-14 118.5 18.7 189 945-1185 14-224 (227)
88 PRK14969 DNA polymerase III su 99.2 5.3E-10 1.1E-14 136.0 17.5 174 945-1138 12-225 (527)
89 PRK11034 clpA ATP-dependent Cl 99.2 2.8E-10 6E-15 143.0 15.3 169 947-1139 184-407 (758)
90 PRK06893 DNA replication initi 99.2 3.3E-10 7.1E-15 123.9 14.0 142 985-1135 40-205 (229)
91 TIGR02928 orc1/cdc6 family rep 99.2 1.5E-09 3.2E-14 125.2 20.1 183 949-1143 15-256 (365)
92 TIGR00362 DnaA chromosomal rep 99.1 4.3E-10 9.3E-15 132.5 15.7 145 985-1139 137-316 (405)
93 PRK00149 dnaA chromosomal repl 99.1 5E-10 1.1E-14 133.8 16.3 145 985-1139 149-328 (450)
94 PRK14951 DNA polymerase III su 99.1 7.4E-10 1.6E-14 136.2 18.1 174 945-1138 12-230 (618)
95 PRK14959 DNA polymerase III su 99.1 1E-09 2.2E-14 134.4 18.7 162 945-1124 12-212 (624)
96 PRK12402 replication factor C 99.1 1.1E-09 2.4E-14 124.6 17.6 169 945-1136 11-226 (337)
97 PHA02544 44 clamp loader, smal 99.1 5.2E-10 1.1E-14 126.8 14.9 144 945-1106 17-175 (316)
98 PLN03025 replication factor C 99.1 4E-10 8.7E-15 128.8 14.1 161 945-1124 9-192 (319)
99 PRK14957 DNA polymerase III su 99.1 7.2E-10 1.6E-14 134.8 16.8 174 945-1137 12-224 (546)
100 PRK10787 DNA-binding ATP-depen 99.1 1E-09 2.2E-14 138.7 18.6 224 950-1210 323-609 (784)
101 PRK08084 DNA replication initi 99.1 2.7E-09 5.9E-14 117.2 19.0 168 945-1136 18-212 (235)
102 PRK07764 DNA polymerase III su 99.1 8.3E-10 1.8E-14 139.8 16.2 171 945-1135 11-223 (824)
103 PRK05896 DNA polymerase III su 99.1 8.7E-10 1.9E-14 134.5 15.5 173 945-1136 12-223 (605)
104 PRK06647 DNA polymerase III su 99.1 1.9E-09 4E-14 132.0 18.4 173 945-1137 12-224 (563)
105 KOG2028 ATPase related to the 99.1 1.5E-09 3.2E-14 123.0 16.0 203 946-1192 135-373 (554)
106 PRK05342 clpX ATP-dependent pr 99.1 1.2E-09 2.5E-14 129.3 15.8 194 951-1144 73-381 (412)
107 PRK07133 DNA polymerase III su 99.1 1.2E-09 2.7E-14 135.5 16.3 173 945-1136 14-222 (725)
108 KOG0615 Serine/threonine prote 99.1 1.3E-10 2.8E-15 133.6 7.0 118 128-246 40-168 (475)
109 PRK14965 DNA polymerase III su 99.1 1.1E-09 2.4E-14 134.6 15.6 162 945-1124 12-212 (576)
110 PF00498 FHA: FHA domain; Int 99.1 3.7E-10 8E-15 100.3 8.3 67 154-224 1-68 (68)
111 PRK14952 DNA polymerase III su 99.1 1.6E-09 3.4E-14 132.9 16.5 161 945-1124 9-211 (584)
112 PRK06305 DNA polymerase III su 99.1 2.1E-09 4.6E-14 128.6 17.2 172 945-1135 13-224 (451)
113 PRK14953 DNA polymerase III su 99.1 3.2E-09 6.9E-14 128.1 18.1 174 945-1138 12-225 (486)
114 TIGR03345 VI_ClpV1 type VI sec 99.1 2.6E-09 5.6E-14 136.4 18.0 157 946-1127 184-391 (852)
115 PRK08727 hypothetical protein; 99.1 8.2E-09 1.8E-13 113.4 19.3 131 985-1124 42-196 (233)
116 PRK14955 DNA polymerase III su 99.0 2.2E-09 4.7E-14 126.5 15.8 173 945-1136 12-231 (397)
117 PRK13341 recombination factor 99.0 2.9E-09 6.4E-14 133.4 16.8 172 945-1138 24-222 (725)
118 PRK12422 chromosomal replicati 99.0 4.5E-09 9.7E-14 125.6 17.4 190 985-1209 142-366 (445)
119 PRK10865 protein disaggregatio 99.0 1.5E-09 3.3E-14 138.7 14.1 155 946-1125 175-380 (857)
120 PRK09111 DNA polymerase III su 99.0 5.2E-09 1.1E-13 128.8 18.1 173 945-1137 20-237 (598)
121 PRK14970 DNA polymerase III su 99.0 6.3E-09 1.4E-13 121.0 17.1 172 945-1135 13-211 (367)
122 KOG0989 Replication factor C, 99.0 3.7E-09 7.9E-14 118.5 14.3 168 945-1135 32-229 (346)
123 PRK08451 DNA polymerase III su 99.0 5.2E-09 1.1E-13 127.0 16.7 174 945-1138 10-223 (535)
124 cd00060 FHA Forkhead associate 99.0 1.9E-09 4E-14 101.4 9.8 97 134-234 1-101 (102)
125 PRK00440 rfc replication facto 99.0 1.2E-08 2.6E-13 115.0 17.9 161 945-1124 13-195 (319)
126 PRK14950 DNA polymerase III su 99.0 9.9E-09 2.1E-13 126.6 18.4 173 945-1136 12-224 (585)
127 PRK05642 DNA replication initi 99.0 8.7E-09 1.9E-13 113.3 15.7 142 985-1136 46-211 (234)
128 PRK14088 dnaA chromosomal repl 99.0 1.1E-08 2.4E-13 122.2 17.4 150 985-1137 131-309 (440)
129 COG2607 Predicted ATPase (AAA+ 98.9 1.6E-08 3.4E-13 110.3 15.8 173 945-1135 56-275 (287)
130 PRK14948 DNA polymerase III su 98.9 1.2E-08 2.6E-13 126.4 16.6 172 945-1135 12-224 (620)
131 PRK14954 DNA polymerase III su 98.9 1.3E-08 2.9E-13 125.6 16.4 162 945-1124 12-220 (620)
132 TIGR03346 chaperone_ClpB ATP-d 98.9 6.9E-09 1.5E-13 132.9 14.5 157 946-1127 170-377 (852)
133 TIGR02903 spore_lon_C ATP-depe 98.9 3.5E-08 7.6E-13 122.3 20.2 208 946-1188 151-431 (615)
134 PRK06620 hypothetical protein; 98.9 2.2E-08 4.7E-13 108.9 15.7 136 985-1136 45-192 (214)
135 TIGR00382 clpX endopeptidase C 98.9 1.3E-08 2.8E-13 120.3 14.9 194 950-1143 78-386 (413)
136 CHL00095 clpC Clp protease ATP 98.9 2.3E-08 5.1E-13 127.7 18.4 157 946-1127 176-382 (821)
137 PTZ00112 origin recognition co 98.9 4.7E-08 1E-12 121.6 19.3 175 949-1134 755-979 (1164)
138 PRK14971 DNA polymerase III su 98.9 2.3E-08 5E-13 123.8 16.8 173 945-1136 13-225 (614)
139 PRK14086 dnaA chromosomal repl 98.9 2.3E-08 4.9E-13 122.5 16.3 142 985-1137 315-492 (617)
140 TIGR02640 gas_vesic_GvpN gas v 98.9 3.3E-08 7.1E-13 110.4 15.3 119 985-1104 22-198 (262)
141 COG2812 DnaX DNA polymerase II 98.8 1.2E-08 2.6E-13 122.8 11.7 176 945-1139 12-226 (515)
142 CHL00195 ycf46 Ycf46; Provisio 98.8 3.8E-08 8.3E-13 118.8 16.1 138 703-909 317-465 (489)
143 PRK13407 bchI magnesium chelat 98.8 6.4E-08 1.4E-12 111.8 16.9 146 945-1104 4-216 (334)
144 PRK14087 dnaA chromosomal repl 98.8 3.3E-08 7.1E-13 118.5 14.7 146 985-1140 142-326 (450)
145 PRK09087 hypothetical protein; 98.8 4.9E-08 1.1E-12 107.0 14.9 161 985-1187 45-222 (226)
146 TIGR00390 hslU ATP-dependent p 98.8 5E-08 1.1E-12 114.8 15.0 72 950-1021 13-84 (441)
147 PRK03992 proteasome-activating 98.7 2.4E-07 5.2E-12 109.2 17.0 82 800-909 292-374 (389)
148 KOG1969 DNA replication checkp 98.7 9.7E-08 2.1E-12 116.2 13.6 145 985-1143 327-517 (877)
149 TIGR01650 PD_CobS cobaltochela 98.7 1E-07 2.2E-12 109.4 13.1 121 985-1105 65-234 (327)
150 PRK05201 hslU ATP-dependent pr 98.7 8.7E-08 1.9E-12 112.8 12.7 72 950-1021 16-87 (443)
151 PRK05564 DNA polymerase III su 98.7 4.6E-07 9.9E-12 103.5 18.2 161 946-1127 1-185 (313)
152 PF07728 AAA_5: AAA domain (dy 98.7 2.9E-08 6.4E-13 99.3 7.3 97 986-1082 1-139 (139)
153 CHL00081 chlI Mg-protoporyphyr 98.7 3.5E-07 7.6E-12 106.3 17.1 143 945-1104 13-232 (350)
154 COG0714 MoxR-like ATPases [Gen 98.7 1.8E-07 3.9E-12 107.6 14.3 121 985-1105 44-204 (329)
155 COG1224 TIP49 DNA helicase TIP 98.7 7E-07 1.5E-11 102.0 17.6 65 949-1022 39-105 (450)
156 PF00308 Bac_DnaA: Bacterial d 98.7 1.8E-07 4E-12 102.0 12.7 143 985-1137 35-212 (219)
157 COG1474 CDC6 Cdc6-related prot 98.7 7.2E-07 1.6E-11 104.5 18.2 183 950-1143 18-247 (366)
158 PHA02244 ATPase-like protein 98.7 3E-07 6.5E-12 107.0 14.8 112 985-1100 120-269 (383)
159 cd00009 AAA The AAA+ (ATPases 98.6 2.7E-07 5.8E-12 89.6 11.8 106 984-1089 19-150 (151)
160 KOG0737 AAA+-type ATPase [Post 98.6 6.5E-07 1.4E-11 102.9 16.3 227 435-880 73-312 (386)
161 smart00763 AAA_PrkA PrkA AAA d 98.6 1.9E-07 4E-12 108.4 12.0 63 947-1017 48-118 (361)
162 TIGR00678 holB DNA polymerase 98.6 5.3E-07 1.2E-11 95.3 14.4 132 983-1124 13-183 (188)
163 PRK09112 DNA polymerase III su 98.6 8.6E-07 1.9E-11 103.3 17.1 174 945-1138 19-245 (351)
164 PRK07471 DNA polymerase III su 98.6 8.2E-07 1.8E-11 104.0 16.5 162 945-1127 15-233 (365)
165 TIGR02442 Cob-chelat-sub cobal 98.6 1.1E-06 2.4E-11 109.6 18.1 144 948-1105 3-215 (633)
166 smart00350 MCM minichromosome 98.6 1.8E-06 3.9E-11 105.3 19.3 155 950-1106 204-402 (509)
167 TIGR02030 BchI-ChlI magnesium 98.6 1.1E-06 2.4E-11 101.9 16.3 144 947-1104 2-219 (337)
168 PF07726 AAA_3: ATPase family 98.5 4.3E-08 9.3E-13 98.7 3.5 88 986-1082 1-129 (131)
169 COG1222 RPT1 ATP-dependent 26S 98.5 8.5E-07 1.8E-11 101.6 12.4 146 689-908 232-393 (406)
170 PRK08058 DNA polymerase III su 98.5 2.4E-06 5.3E-11 98.7 16.1 138 947-1102 3-180 (329)
171 PF06068 TIP49: TIP49 C-termin 98.4 1.9E-06 4.2E-11 99.8 13.8 67 948-1023 23-91 (398)
172 TIGR01241 FtsH_fam ATP-depende 98.4 1.8E-06 3.8E-11 104.9 14.2 80 800-907 215-295 (495)
173 PRK07399 DNA polymerase III su 98.4 3E-06 6.6E-11 97.4 15.2 163 947-1130 2-219 (314)
174 TIGR03354 VI_FHA type VI secre 98.4 4.1E-07 8.9E-12 107.4 7.9 82 146-232 18-103 (396)
175 COG0470 HolB ATPase involved i 98.4 1.3E-06 2.8E-11 98.7 11.2 135 950-1101 2-178 (325)
176 PRK13531 regulatory ATPase Rav 98.4 8E-06 1.7E-10 98.1 18.2 137 950-1103 21-193 (498)
177 KOG1051 Chaperone HSP104 and r 98.4 1.8E-05 3.8E-10 100.5 22.0 113 950-1070 563-710 (898)
178 PF07724 AAA_2: AAA domain (Cd 98.4 1.1E-06 2.4E-11 92.7 9.8 89 983-1072 2-131 (171)
179 TIGR03015 pepcterm_ATPase puta 98.4 7.6E-06 1.6E-10 90.5 16.9 85 1077-1188 178-267 (269)
180 PRK11331 5-methylcytosine-spec 98.4 1.7E-06 3.8E-11 102.9 12.5 46 948-1009 174-219 (459)
181 COG0593 DnaA ATPase involved i 98.4 5.1E-06 1.1E-10 98.1 16.0 145 985-1139 114-292 (408)
182 CHL00206 ycf2 Ycf2; Provisiona 98.4 3.2E-06 7E-11 112.0 15.6 148 688-907 1719-1877(2281)
183 TIGR00764 lon_rel lon-related 98.3 4.6E-06 9.9E-11 103.7 14.7 51 945-1011 14-64 (608)
184 COG1220 HslU ATP-dependent pro 98.3 5.8E-06 1.3E-10 94.1 14.0 72 950-1021 16-87 (444)
185 PRK05707 DNA polymerase III su 98.3 6.8E-06 1.5E-10 95.1 14.7 137 983-1127 21-198 (328)
186 PF01078 Mg_chelatase: Magnesi 98.3 1.4E-06 3.1E-11 94.3 7.3 46 947-1008 1-46 (206)
187 PRK08116 hypothetical protein; 98.3 2.9E-06 6.3E-11 95.5 9.7 38 984-1021 114-154 (268)
188 TIGR02031 BchD-ChlD magnesium 98.3 1.6E-05 3.4E-10 98.7 16.8 122 984-1105 16-175 (589)
189 CHL00176 ftsH cell division pr 98.2 1.5E-05 3.3E-10 99.5 15.9 135 702-907 273-423 (638)
190 COG1223 Predicted ATPase (AAA+ 98.2 9.3E-06 2E-10 89.8 12.0 143 690-906 199-354 (368)
191 KOG0734 AAA+-type ATPase conta 98.2 6.8E-06 1.5E-10 97.7 10.7 153 680-907 369-541 (752)
192 smart00382 AAA ATPases associa 98.1 1E-05 2.2E-10 77.4 9.5 36 985-1020 3-41 (148)
193 PF03215 Rad17: Rad17 cell cyc 98.1 5.9E-05 1.3E-09 92.2 17.8 181 945-1142 15-269 (519)
194 PRK11608 pspF phage shock prot 98.1 3.1E-05 6.7E-10 89.5 14.5 180 948-1140 5-239 (326)
195 TIGR01817 nifA Nif-specific re 98.1 2.2E-05 4.7E-10 96.3 13.9 185 945-1141 192-428 (534)
196 COG1219 ClpX ATP-dependent pro 98.1 1.6E-05 3.4E-10 90.2 10.6 70 951-1022 63-135 (408)
197 PRK04132 replication factor C 98.1 2E-05 4.2E-10 100.5 12.6 165 943-1126 537-725 (846)
198 PRK12377 putative replication 98.1 1.7E-05 3.7E-10 88.5 10.7 79 932-1022 57-142 (248)
199 KOG0991 Replication factor C, 98.1 1.8E-05 3.9E-10 86.4 10.4 154 945-1124 23-206 (333)
200 TIGR02974 phageshock_pspF psp 98.1 4.1E-05 9E-10 88.7 13.8 156 985-1141 23-233 (329)
201 PRK15429 formate hydrogenlyase 98.0 3.9E-05 8.5E-10 96.8 14.5 183 946-1141 373-609 (686)
202 PTZ00454 26S protease regulato 98.0 3.4E-05 7.5E-10 91.5 12.7 144 690-907 227-386 (398)
203 TIGR00368 Mg chelatase-related 98.0 0.00013 2.8E-09 89.0 17.5 47 945-1007 188-234 (499)
204 KOG2227 Pre-initiation complex 98.0 0.00023 4.9E-09 84.4 18.5 226 950-1193 151-421 (529)
205 PF13177 DNA_pol3_delta2: DNA 98.0 6.8E-05 1.5E-09 78.4 12.7 120 953-1090 1-160 (162)
206 KOG1942 DNA helicase, TBP-inte 98.0 0.00011 2.5E-09 82.4 14.6 65 949-1022 38-104 (456)
207 PRK11388 DNA-binding transcrip 98.0 7.2E-05 1.6E-09 93.6 14.9 182 946-1140 322-553 (638)
208 smart00240 FHA Forkhead associ 98.0 1.3E-05 2.8E-10 67.3 5.4 50 154-207 1-52 (52)
209 PLN02927 antheraxanthin epoxid 98.0 1.5E-05 3.3E-10 99.6 8.4 84 143-231 545-642 (668)
210 PRK08769 DNA polymerase III su 97.9 0.00011 2.4E-09 84.9 14.5 154 954-1130 9-206 (319)
211 PF05621 TniB: Bacterial TniB 97.9 0.00015 3.3E-09 82.6 15.2 158 985-1144 62-272 (302)
212 TIGR00602 rad24 checkpoint pro 97.9 9.8E-05 2.1E-09 92.0 14.9 61 945-1014 80-140 (637)
213 COG1221 PspF Transcriptional r 97.9 9.4E-05 2E-09 87.4 13.8 184 945-1141 74-309 (403)
214 PRK15424 propionate catabolism 97.9 8.4E-05 1.8E-09 91.2 13.9 66 946-1023 216-292 (538)
215 COG0606 Predicted ATPase with 97.9 9.7E-06 2.1E-10 96.3 5.4 48 945-1008 175-222 (490)
216 PRK06871 DNA polymerase III su 97.9 0.00023 5E-09 82.5 16.4 152 954-1127 7-198 (325)
217 PRK05022 anaerobic nitric oxid 97.9 0.00014 3.1E-09 88.9 15.1 183 947-1142 185-421 (509)
218 PRK07993 DNA polymerase III su 97.9 0.00023 4.9E-09 82.9 15.8 137 982-1127 22-199 (334)
219 PRK06835 DNA replication prote 97.9 2.5E-05 5.5E-10 90.5 8.0 38 985-1022 184-224 (329)
220 PRK06964 DNA polymerase III su 97.9 4.2E-05 9.2E-10 89.0 9.7 57 1042-1103 147-203 (342)
221 PRK07952 DNA replication prote 97.8 8E-05 1.7E-09 83.1 10.7 79 932-1022 55-140 (244)
222 COG1484 DnaC DNA replication p 97.8 3.9E-05 8.5E-10 85.9 8.2 40 984-1023 105-147 (254)
223 TIGR02329 propionate_PrpR prop 97.8 0.00015 3.3E-09 88.9 13.4 66 946-1023 209-277 (526)
224 PRK06090 DNA polymerase III su 97.8 0.0004 8.7E-09 80.3 16.0 131 954-1102 8-178 (319)
225 PRK10820 DNA-binding transcrip 97.8 0.00018 3.9E-09 88.3 14.0 183 945-1140 200-436 (520)
226 COG3829 RocR Transcriptional r 97.8 9.9E-05 2.1E-09 89.0 11.2 67 945-1023 241-310 (560)
227 PF13207 AAA_17: AAA domain; P 97.8 6.5E-05 1.4E-09 73.2 7.8 112 987-1106 2-114 (121)
228 PRK08939 primosomal protein Dn 97.8 6.5E-05 1.4E-09 86.3 9.1 40 984-1023 156-198 (306)
229 PF01695 IstB_IS21: IstB-like 97.8 2.4E-05 5.1E-10 83.1 4.9 40 984-1023 47-89 (178)
230 KOG2035 Replication factor C, 97.8 0.00035 7.6E-09 78.4 14.0 162 946-1124 10-220 (351)
231 PRK08181 transposase; Validate 97.7 0.00011 2.3E-09 83.1 10.0 38 985-1022 107-147 (269)
232 KOG1514 Origin recognition com 97.7 0.00059 1.3E-08 84.2 16.6 214 950-1191 397-659 (767)
233 COG3604 FhlA Transcriptional r 97.7 0.00017 3.7E-09 86.1 11.7 182 941-1141 215-456 (550)
234 PRK13765 ATP-dependent proteas 97.7 0.00035 7.7E-09 87.3 15.0 50 945-1010 27-76 (637)
235 PTZ00361 26 proteosome regulat 97.7 0.00015 3.3E-09 87.0 11.3 145 690-908 265-425 (438)
236 COG1716 FOG: FHA domain [Signa 97.7 0.00015 3.3E-09 76.5 9.7 75 147-228 84-159 (191)
237 PF00158 Sigma54_activat: Sigm 97.7 0.0001 2.2E-09 77.8 7.7 39 985-1023 23-64 (168)
238 TIGR02915 PEP_resp_reg putativ 97.7 0.00033 7.2E-09 83.5 13.1 156 985-1141 163-372 (445)
239 COG1239 ChlI Mg-chelatase subu 97.7 0.00055 1.2E-08 80.8 14.4 147 946-1106 14-234 (423)
240 KOG0745 Putative ATP-dependent 97.7 0.00033 7.2E-09 82.3 12.3 38 985-1022 227-264 (564)
241 PRK10733 hflB ATP-dependent me 97.6 0.00029 6.4E-09 88.5 12.4 135 702-907 242-392 (644)
242 PRK08118 topology modulation p 97.6 0.00024 5.1E-09 74.7 9.8 100 986-1106 3-103 (167)
243 PTZ00111 DNA replication licen 97.6 0.0006 1.3E-08 87.3 14.5 155 950-1104 451-657 (915)
244 PRK08699 DNA polymerase III su 97.6 0.00018 3.9E-09 83.4 9.1 116 982-1102 19-183 (325)
245 PRK10923 glnG nitrogen regulat 97.6 0.00037 7.9E-09 83.8 11.8 181 948-1141 137-371 (469)
246 COG2204 AtoC Response regulato 97.6 0.00061 1.3E-08 82.0 13.5 183 947-1142 139-375 (464)
247 PRK09862 putative ATP-dependen 97.5 0.0028 6E-08 77.6 18.6 47 946-1008 188-234 (506)
248 PRK06526 transposase; Provisio 97.5 8.2E-05 1.8E-09 83.4 4.9 39 984-1022 98-139 (254)
249 PRK06921 hypothetical protein; 97.5 0.00014 3E-09 82.0 6.5 37 984-1020 117-157 (266)
250 KOG2680 DNA helicase TIP49, TB 97.5 0.0022 4.9E-08 72.6 15.4 91 1070-1187 338-429 (454)
251 COG0542 clpA ATP-binding subun 97.5 0.00061 1.3E-08 86.0 12.2 156 946-1125 167-372 (786)
252 PRK11361 acetoacetate metaboli 97.5 0.001 2.2E-08 79.5 13.7 156 985-1141 167-376 (457)
253 PRK13949 shikimate kinase; Pro 97.5 0.00038 8.3E-09 73.3 8.6 98 985-1094 2-106 (169)
254 PRK07261 topology modulation p 97.5 0.00055 1.2E-08 72.1 9.8 100 987-1106 3-103 (171)
255 KOG1970 Checkpoint RAD17-RFC c 97.4 0.0017 3.7E-08 78.5 14.2 63 947-1016 80-142 (634)
256 KOG0990 Replication factor C, 97.4 0.00061 1.3E-08 77.8 9.2 150 941-1109 33-208 (360)
257 KOG0740 AAA+-type ATPase [Post 97.3 0.00047 1E-08 82.0 7.9 127 689-879 233-371 (428)
258 TIGR01242 26Sp45 26S proteasom 97.3 0.0017 3.7E-08 76.1 12.3 142 690-906 204-362 (364)
259 KOG0738 AAA+-type ATPase [Post 97.3 0.0014 3E-08 76.5 10.6 131 686-883 290-436 (491)
260 PRK15455 PrkA family serine pr 97.3 0.00034 7.3E-09 85.7 5.9 64 946-1017 73-137 (644)
261 TIGR01818 ntrC nitrogen regula 97.2 0.0034 7.3E-08 75.3 13.9 180 950-1141 135-367 (463)
262 PF12775 AAA_7: P-loop contain 97.2 0.00077 1.7E-08 76.4 8.0 119 985-1106 34-195 (272)
263 PF00910 RNA_helicase: RNA hel 97.2 0.0004 8.6E-09 67.6 4.9 23 987-1009 1-23 (107)
264 PRK00131 aroK shikimate kinase 97.2 0.00035 7.7E-09 71.8 4.6 33 983-1015 3-35 (175)
265 KOG0739 AAA+-type ATPase [Post 97.2 0.00026 5.7E-09 79.8 3.7 132 680-876 204-347 (439)
266 PRK09183 transposase/IS protei 97.2 0.00059 1.3E-08 76.7 6.6 37 985-1021 103-142 (259)
267 PRK06217 hypothetical protein; 97.2 0.0011 2.4E-08 70.2 8.1 98 986-1103 3-105 (183)
268 KOG0731 AAA+-type ATPase conta 97.2 0.0017 3.7E-08 81.7 10.9 156 680-907 376-553 (774)
269 PF12774 AAA_6: Hydrolytic ATP 97.2 0.0018 3.9E-08 71.8 9.9 110 985-1100 33-176 (231)
270 PRK13947 shikimate kinase; Pro 97.1 0.0018 3.8E-08 67.2 9.1 31 986-1016 3-33 (171)
271 KOG1881 Anion exchanger adapto 97.1 0.0017 3.7E-08 80.0 10.0 88 151-241 176-272 (793)
272 cd00227 CPT Chloramphenicol (C 97.1 0.0013 2.9E-08 69.0 7.9 40 985-1024 3-42 (175)
273 PRK15115 response regulator Gl 97.1 0.0062 1.3E-07 72.8 14.5 154 985-1140 158-366 (444)
274 PF14532 Sigma54_activ_2: Sigm 97.1 0.00074 1.6E-08 68.3 5.7 37 985-1021 22-61 (138)
275 PF13671 AAA_33: AAA domain; P 97.1 0.001 2.2E-08 66.6 6.4 35 987-1023 2-36 (143)
276 KOG0728 26S proteasome regulat 97.1 0.0029 6.3E-08 70.2 10.2 148 689-907 228-388 (404)
277 COG3456 Predicted component of 97.1 0.00071 1.5E-08 79.3 5.8 75 150-234 24-101 (430)
278 PHA02624 large T antigen; Prov 97.1 0.0012 2.6E-08 81.4 7.9 105 984-1090 431-561 (647)
279 TIGR03689 pup_AAA proteasome A 97.0 0.0044 9.6E-08 75.9 12.6 167 690-904 274-475 (512)
280 KOG1968 Replication factor C, 97.0 0.0011 2.5E-08 85.0 7.5 147 986-1142 359-537 (871)
281 PF01637 Arch_ATPase: Archaeal 97.0 0.0022 4.7E-08 68.3 8.5 83 1042-1127 139-229 (234)
282 PF00931 NB-ARC: NB-ARC domain 97.0 0.0076 1.7E-07 67.3 13.0 141 983-1125 18-195 (287)
283 PRK13406 bchD magnesium chelat 97.0 0.011 2.3E-07 73.8 15.3 111 985-1095 26-173 (584)
284 TIGR01313 therm_gnt_kin carboh 96.9 0.0032 7E-08 65.0 8.7 32 987-1020 1-32 (163)
285 PF03969 AFG1_ATPase: AFG1-lik 96.9 0.0034 7.5E-08 73.9 9.7 30 981-1010 59-88 (362)
286 PF05729 NACHT: NACHT domain 96.9 0.0041 8.8E-08 62.9 9.0 23 986-1008 2-24 (166)
287 PRK08154 anaerobic benzoate ca 96.9 0.0032 6.9E-08 72.5 9.1 36 981-1016 130-165 (309)
288 PRK13948 shikimate kinase; Pro 96.9 0.0018 3.9E-08 69.4 6.4 36 981-1016 7-42 (182)
289 cd02021 GntK Gluconate kinase 96.9 0.0041 8.8E-08 63.2 8.7 33 987-1021 2-34 (150)
290 cd00464 SK Shikimate kinase (S 96.8 0.00099 2.1E-08 67.4 4.0 31 986-1016 1-31 (154)
291 KOG0726 26S proteasome regulat 96.8 0.0018 4E-08 73.1 6.0 149 687-906 264-425 (440)
292 PRK03839 putative kinase; Prov 96.8 0.001 2.2E-08 69.9 3.9 30 987-1016 3-32 (180)
293 COG0703 AroK Shikimate kinase 96.8 0.0028 6.1E-08 67.4 7.0 32 985-1016 3-34 (172)
294 KOG0478 DNA replication licens 96.8 0.0097 2.1E-07 73.6 12.4 147 950-1104 430-626 (804)
295 PRK06547 hypothetical protein; 96.8 0.0075 1.6E-07 64.0 10.1 32 983-1014 14-45 (172)
296 PRK06762 hypothetical protein; 96.8 0.0048 1E-07 63.8 8.4 37 985-1021 3-39 (166)
297 PRK00771 signal recognition pa 96.7 0.026 5.7E-07 68.2 15.5 38 983-1020 94-134 (437)
298 PRK08233 hypothetical protein; 96.7 0.01 2.3E-07 61.7 10.7 111 985-1102 4-118 (182)
299 PRK05917 DNA polymerase III su 96.7 0.016 3.5E-07 66.5 12.9 104 983-1091 18-154 (290)
300 COG0465 HflB ATP-dependent Zn 96.7 0.017 3.7E-07 71.7 13.5 144 690-908 231-391 (596)
301 PF13401 AAA_22: AAA domain; P 96.7 0.002 4.3E-08 63.3 4.6 37 985-1021 5-49 (131)
302 PF06309 Torsin: Torsin; Inte 96.7 0.0026 5.6E-08 64.5 5.3 52 950-1008 26-77 (127)
303 PHA00729 NTP-binding motif con 96.6 0.0049 1.1E-07 68.2 7.9 29 985-1013 18-46 (226)
304 PRK05057 aroK shikimate kinase 96.6 0.0055 1.2E-07 64.7 8.0 33 985-1017 5-37 (172)
305 PRK07276 DNA polymerase III su 96.6 0.052 1.1E-06 62.4 16.3 111 982-1100 22-171 (290)
306 PRK04040 adenylate kinase; Pro 96.6 0.018 3.8E-07 62.0 11.8 36 984-1021 2-39 (188)
307 PRK00625 shikimate kinase; Pro 96.6 0.0018 4E-08 68.7 4.2 31 986-1016 2-32 (173)
308 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.0018 3.9E-08 67.9 4.0 33 987-1021 2-34 (183)
309 PRK14532 adenylate kinase; Pro 96.6 0.0018 3.9E-08 68.5 3.9 29 986-1014 2-30 (188)
310 PRK07132 DNA polymerase III su 96.6 0.025 5.4E-07 65.2 13.4 112 984-1102 18-160 (299)
311 PF00493 MCM: MCM2/3/5 family 96.6 0.0011 2.4E-08 77.0 2.3 146 950-1107 25-224 (331)
312 KOG0652 26S proteasome regulat 96.6 0.0095 2.1E-07 66.6 9.3 150 689-909 252-414 (424)
313 PRK10365 transcriptional regul 96.5 0.027 5.9E-07 67.1 13.6 39 985-1023 163-204 (441)
314 cd01428 ADK Adenylate kinase ( 96.5 0.0022 4.8E-08 67.5 4.0 28 987-1014 2-29 (194)
315 cd02020 CMPK Cytidine monophos 96.5 0.0023 5E-08 64.0 3.8 30 987-1016 2-31 (147)
316 PF06414 Zeta_toxin: Zeta toxi 96.4 0.0068 1.5E-07 65.1 7.1 121 982-1106 13-145 (199)
317 PRK14531 adenylate kinase; Pro 96.4 0.0028 6.1E-08 67.2 4.0 30 985-1014 3-32 (183)
318 PF13191 AAA_16: AAA ATPase do 96.4 0.0027 5.8E-08 65.8 3.8 59 951-1020 2-63 (185)
319 KOG0744 AAA+-type ATPase [Post 96.4 0.021 4.5E-07 65.8 10.8 74 443-521 131-204 (423)
320 PLN03210 Resistant to P. syrin 96.3 0.055 1.2E-06 72.8 16.4 54 946-1011 181-234 (1153)
321 COG1241 MCM2 Predicted ATPase 96.3 0.011 2.3E-07 74.5 9.0 150 950-1107 287-486 (682)
322 PRK12723 flagellar biosynthesi 96.3 0.013 2.7E-07 69.9 9.0 25 984-1008 174-198 (388)
323 KOG3347 Predicted nucleotide k 96.3 0.0031 6.7E-08 65.5 3.3 31 986-1016 9-39 (176)
324 PRK14530 adenylate kinase; Pro 96.2 0.0041 8.9E-08 67.5 4.1 30 986-1015 5-34 (215)
325 PRK05818 DNA polymerase III su 96.2 0.03 6.4E-07 63.3 10.8 105 982-1091 5-147 (261)
326 KOG2383 Predicted ATPase [Gene 96.2 0.024 5.1E-07 66.9 10.2 80 1042-1136 211-295 (467)
327 COG5271 MDN1 AAA ATPase contai 96.2 0.045 9.7E-07 72.7 13.1 116 985-1101 1544-1700(4600)
328 PRK03731 aroL shikimate kinase 96.2 0.0051 1.1E-07 64.0 4.3 32 985-1016 3-34 (171)
329 TIGR01618 phage_P_loop phage n 96.1 0.0062 1.3E-07 67.2 5.1 23 984-1006 12-34 (220)
330 PRK13808 adenylate kinase; Pro 96.1 0.016 3.6E-07 67.5 8.7 33 987-1021 3-35 (333)
331 PF01583 APS_kinase: Adenylyls 96.1 0.0079 1.7E-07 63.1 5.5 41 985-1025 3-46 (156)
332 PHA02530 pseT polynucleotide k 96.1 0.015 3.2E-07 65.9 8.0 36 985-1021 3-38 (300)
333 PF01745 IPT: Isopentenyl tran 96.1 0.025 5.3E-07 62.2 9.2 38 986-1023 3-40 (233)
334 PTZ00088 adenylate kinase 1; P 96.1 0.005 1.1E-07 68.3 4.0 31 985-1015 7-37 (229)
335 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0054 1.2E-07 64.2 4.1 30 985-1014 4-33 (188)
336 PRK13946 shikimate kinase; Pro 96.1 0.0051 1.1E-07 65.3 3.9 32 985-1016 11-42 (184)
337 PRK02496 adk adenylate kinase; 96.0 0.0052 1.1E-07 64.8 3.8 29 986-1014 3-31 (184)
338 PRK14528 adenylate kinase; Pro 96.0 0.0062 1.4E-07 65.0 4.2 30 985-1014 2-31 (186)
339 cd02027 APSK Adenosine 5'-phos 96.0 0.024 5.3E-07 58.4 8.4 36 987-1022 2-40 (149)
340 TIGR01351 adk adenylate kinase 96.0 0.0057 1.2E-07 66.2 3.9 28 987-1014 2-29 (210)
341 PHA02774 E1; Provisional 96.0 0.045 9.8E-07 67.7 11.8 33 985-1017 435-468 (613)
342 PRK00279 adk adenylate kinase; 96.0 0.0063 1.4E-07 66.1 4.1 28 987-1014 3-30 (215)
343 PLN02200 adenylate kinase fami 95.9 0.0078 1.7E-07 66.8 4.7 38 983-1022 42-79 (234)
344 PRK05541 adenylylsulfate kinas 95.9 0.02 4.3E-07 60.0 7.5 27 983-1009 6-32 (176)
345 COG0529 CysC Adenylylsulfate k 95.9 0.018 3.9E-07 61.5 6.9 99 984-1092 23-131 (197)
346 COG0324 MiaA tRNA delta(2)-iso 95.9 0.027 5.8E-07 65.1 8.8 37 984-1020 3-39 (308)
347 PRK14527 adenylate kinase; Pro 95.9 0.0075 1.6E-07 64.3 4.1 31 984-1014 6-36 (191)
348 COG1618 Predicted nucleotide k 95.8 0.049 1.1E-06 57.6 9.7 25 984-1008 5-29 (179)
349 PRK05480 uridine/cytidine kina 95.8 0.09 1.9E-06 56.7 12.2 37 984-1020 6-43 (209)
350 PRK14722 flhF flagellar biosyn 95.8 0.033 7.1E-07 66.1 9.4 25 984-1008 137-161 (374)
351 COG1102 Cmk Cytidylate kinase 95.8 0.0078 1.7E-07 63.4 3.5 28 987-1014 3-30 (179)
352 cd01120 RecA-like_NTPases RecA 95.8 0.011 2.4E-07 59.2 4.6 32 987-1018 2-36 (165)
353 PF00406 ADK: Adenylate kinase 95.7 0.0073 1.6E-07 61.8 3.1 32 989-1022 1-32 (151)
354 PRK07667 uridine kinase; Provi 95.7 0.076 1.7E-06 57.0 10.9 37 985-1021 18-57 (193)
355 PF13238 AAA_18: AAA domain; P 95.7 0.0085 1.9E-07 58.2 3.2 22 987-1008 1-22 (129)
356 PRK04182 cytidylate kinase; Pr 95.6 0.01 2.2E-07 61.5 3.9 29 986-1014 2-30 (180)
357 PRK10867 signal recognition pa 95.6 0.18 3.9E-06 61.0 14.8 38 983-1020 99-140 (433)
358 cd02028 UMPK_like Uridine mono 95.6 0.077 1.7E-06 56.5 10.5 35 987-1021 2-39 (179)
359 TIGR01425 SRP54_euk signal rec 95.6 0.15 3.2E-06 61.6 14.0 37 983-1019 99-138 (429)
360 PLN02199 shikimate kinase 95.6 0.042 9.2E-07 63.2 9.0 101 984-1095 102-208 (303)
361 KOG0732 AAA+-type ATPase conta 95.6 0.029 6.3E-07 72.9 8.5 352 691-1144 353-740 (1080)
362 TIGR03574 selen_PSTK L-seryl-t 95.6 0.029 6.4E-07 62.3 7.6 34 987-1020 2-38 (249)
363 KOG0482 DNA replication licens 95.6 0.07 1.5E-06 64.4 10.8 186 950-1140 343-588 (721)
364 PRK06696 uridine kinase; Valid 95.6 0.027 5.9E-07 61.7 7.1 39 984-1022 22-63 (223)
365 PRK14730 coaE dephospho-CoA ki 95.5 0.038 8.3E-07 59.7 8.0 29 986-1014 3-31 (195)
366 cd02024 NRK1 Nicotinamide ribo 95.5 0.074 1.6E-06 57.4 10.0 27 987-1013 2-29 (187)
367 PF13173 AAA_14: AAA domain 95.5 0.015 3.2E-07 58.2 4.3 37 985-1021 3-41 (128)
368 KOG0480 DNA replication licens 95.5 0.26 5.7E-06 61.2 15.4 240 927-1197 332-653 (764)
369 KOG0245 Kinesin-like protein [ 95.5 0.032 6.9E-07 71.4 7.9 80 151-237 476-558 (1221)
370 PRK01184 hypothetical protein; 95.5 0.012 2.6E-07 62.0 3.8 29 986-1015 3-31 (184)
371 TIGR02173 cyt_kin_arch cytidyl 95.4 0.013 2.8E-07 60.4 3.9 29 987-1015 3-31 (171)
372 cd01124 KaiC KaiC is a circadi 95.4 0.017 3.6E-07 60.4 4.7 34 987-1020 2-38 (187)
373 COG0563 Adk Adenylate kinase a 95.4 0.011 2.4E-07 63.1 3.2 30 986-1017 2-31 (178)
374 PF13521 AAA_28: AAA domain; P 95.4 0.013 2.9E-07 60.6 3.7 26 987-1013 2-27 (163)
375 PF13086 AAA_11: AAA domain; P 95.3 0.012 2.6E-07 62.6 3.3 22 987-1008 20-41 (236)
376 PRK00091 miaA tRNA delta(2)-is 95.3 0.021 4.6E-07 66.0 5.4 38 985-1022 5-42 (307)
377 PLN02674 adenylate kinase 95.3 0.017 3.6E-07 64.9 4.3 36 984-1021 31-66 (244)
378 PRK14526 adenylate kinase; Pro 95.3 0.016 3.4E-07 63.6 4.0 33 986-1020 2-34 (211)
379 PRK00889 adenylylsulfate kinas 95.3 0.088 1.9E-06 55.1 9.4 38 984-1021 4-44 (175)
380 PF13245 AAA_19: Part of AAA d 95.3 0.026 5.7E-07 52.3 4.8 23 986-1008 12-35 (76)
381 PTZ00202 tuzin; Provisional 95.2 0.12 2.6E-06 62.3 11.3 61 948-1019 261-321 (550)
382 COG1936 Predicted nucleotide k 95.2 0.014 3E-07 62.1 3.1 35 986-1023 2-36 (180)
383 PF05272 VirE: Virulence-assoc 95.1 0.039 8.5E-07 60.0 6.5 101 984-1090 52-169 (198)
384 COG1485 Predicted ATPase [Gene 95.1 0.062 1.3E-06 62.8 8.4 29 982-1010 63-91 (367)
385 PRK05537 bifunctional sulfate 95.1 0.14 3E-06 64.0 12.0 74 927-1020 355-432 (568)
386 cd02025 PanK Pantothenate kina 95.0 0.26 5.6E-06 54.4 12.3 54 1078-1132 125-178 (220)
387 TIGR00235 udk uridine kinase. 94.9 0.24 5.2E-06 53.6 11.8 26 985-1010 7-32 (207)
388 TIGR00152 dephospho-CoA kinase 94.9 0.03 6.6E-07 59.5 4.8 29 987-1015 2-30 (188)
389 TIGR00959 ffh signal recogniti 94.9 1.2 2.6E-05 54.1 18.8 38 983-1020 98-139 (428)
390 TIGR00455 apsK adenylylsulfate 94.9 0.1 2.2E-06 55.2 8.7 39 983-1021 17-58 (184)
391 TIGR00150 HI0065_YjeE ATPase, 94.9 0.057 1.2E-06 55.4 6.4 29 983-1011 21-49 (133)
392 PF08298 AAA_PrkA: PrkA AAA do 94.8 0.043 9.2E-07 64.4 6.0 61 948-1016 59-121 (358)
393 cd02023 UMPK Uridine monophosp 94.8 0.2 4.4E-06 53.5 10.8 35 987-1021 2-37 (198)
394 cd02019 NK Nucleoside/nucleoti 94.8 0.031 6.8E-07 50.4 3.8 22 987-1008 2-23 (69)
395 PRK14529 adenylate kinase; Pro 94.7 0.023 5.1E-07 62.9 3.5 28 986-1013 2-29 (223)
396 PLN02165 adenylate isopentenyl 94.7 0.082 1.8E-06 61.8 7.9 36 985-1020 44-79 (334)
397 KOG2228 Origin recognition com 94.7 0.063 1.4E-06 62.4 6.7 144 950-1104 25-219 (408)
398 PRK11889 flhF flagellar biosyn 94.6 0.14 2.9E-06 61.4 9.6 60 955-1019 217-279 (436)
399 PRK13951 bifunctional shikimat 94.6 0.076 1.6E-06 65.2 7.7 31 986-1016 2-32 (488)
400 PLN02840 tRNA dimethylallyltra 94.6 0.056 1.2E-06 64.9 6.4 39 985-1023 22-60 (421)
401 PRK12339 2-phosphoglycerate ki 94.6 0.037 7.9E-07 60.1 4.4 34 985-1020 4-37 (197)
402 PRK12724 flagellar biosynthesi 94.5 0.2 4.4E-06 60.3 10.8 36 984-1019 223-262 (432)
403 COG1855 ATPase (PilT family) [ 94.5 0.041 8.8E-07 65.7 4.8 45 945-1008 243-287 (604)
404 TIGR02012 tigrfam_recA protein 94.5 0.077 1.7E-06 61.8 7.0 44 978-1022 50-96 (321)
405 TIGR02237 recomb_radB DNA repa 94.4 0.061 1.3E-06 57.8 5.7 41 978-1019 7-50 (209)
406 PLN02459 probable adenylate ki 94.4 0.036 7.8E-07 62.8 4.1 34 986-1021 31-64 (261)
407 PRK10078 ribose 1,5-bisphospho 94.4 0.033 7.2E-07 59.2 3.5 30 985-1014 3-32 (186)
408 COG3267 ExeA Type II secretory 94.4 0.64 1.4E-05 52.6 13.5 65 1078-1143 187-255 (269)
409 TIGR00174 miaA tRNA isopenteny 94.3 0.053 1.1E-06 62.3 5.2 37 987-1023 2-38 (287)
410 PRK04220 2-phosphoglycerate ki 94.3 0.062 1.3E-06 62.0 5.6 30 983-1012 91-120 (301)
411 KOG3354 Gluconate kinase [Carb 94.2 0.11 2.4E-06 54.6 6.8 30 985-1014 13-42 (191)
412 PRK05439 pantothenate kinase; 94.2 0.82 1.8E-05 53.3 14.6 39 983-1021 85-128 (311)
413 PRK12338 hypothetical protein; 94.2 0.048 1E-06 63.4 4.5 30 984-1013 4-33 (319)
414 COG0572 Udk Uridine kinase [Nu 94.1 0.37 8E-06 53.4 10.9 31 985-1015 9-39 (218)
415 KOG0729 26S proteasome regulat 94.1 0.11 2.5E-06 58.5 6.9 147 689-906 258-417 (435)
416 PF09336 Vps4_C: Vps4 C termin 94.0 0.022 4.7E-07 51.1 1.1 35 1173-1209 28-62 (62)
417 KOG0477 DNA replication licens 93.9 0.088 1.9E-06 64.9 6.1 75 927-1013 436-511 (854)
418 cd01394 radB RadB. The archaea 93.9 0.089 1.9E-06 57.0 5.7 40 978-1018 14-56 (218)
419 PRK14021 bifunctional shikimat 93.8 0.053 1.1E-06 67.3 4.3 33 985-1017 7-39 (542)
420 PRK10416 signal recognition pa 93.8 0.046 1E-06 63.6 3.5 35 983-1017 113-150 (318)
421 PRK05800 cobU adenosylcobinami 93.8 0.061 1.3E-06 57.1 4.1 36 986-1021 3-38 (170)
422 COG0467 RAD55 RecA-superfamily 93.7 0.088 1.9E-06 58.9 5.5 43 978-1021 18-63 (260)
423 cd00983 recA RecA is a bacter 93.7 0.13 2.8E-06 60.1 6.9 44 978-1022 50-96 (325)
424 TIGR03877 thermo_KaiC_1 KaiC d 93.7 0.092 2E-06 58.1 5.5 41 978-1019 16-59 (237)
425 PRK09270 nucleoside triphospha 93.7 0.54 1.2E-05 51.8 11.5 27 983-1009 32-58 (229)
426 PF06745 KaiC: KaiC; InterPro 93.7 0.08 1.7E-06 57.7 5.0 41 978-1019 14-58 (226)
427 TIGR02322 phosphon_PhnN phosph 93.7 0.052 1.1E-06 56.9 3.4 25 986-1010 3-27 (179)
428 COG4088 Predicted nucleotide k 93.7 0.045 9.7E-07 59.9 2.9 24 986-1009 3-26 (261)
429 cd02022 DPCK Dephospho-coenzym 93.7 0.062 1.3E-06 56.9 4.0 28 987-1015 2-29 (179)
430 PRK09361 radB DNA repair and r 93.7 0.1 2.2E-06 56.9 5.7 40 978-1018 18-60 (225)
431 PRK13975 thymidylate kinase; P 93.7 0.063 1.4E-06 56.9 4.0 29 985-1013 3-31 (196)
432 PF07931 CPT: Chloramphenicol 93.7 0.078 1.7E-06 56.7 4.7 39 985-1023 2-40 (174)
433 PRK12726 flagellar biosynthesi 93.7 0.13 2.8E-06 61.3 6.8 64 952-1019 178-244 (407)
434 PLN02348 phosphoribulokinase 93.6 0.47 1E-05 56.7 11.3 26 985-1010 50-75 (395)
435 PF02367 UPF0079: Uncharacteri 93.6 0.073 1.6E-06 54.0 3.9 30 983-1012 14-43 (123)
436 cd01129 PulE-GspE PulE/GspE Th 93.5 0.12 2.5E-06 58.7 5.9 49 946-1009 57-105 (264)
437 PRK09825 idnK D-gluconate kina 93.5 0.082 1.8E-06 56.3 4.3 34 985-1020 4-37 (176)
438 PRK05973 replicative DNA helic 93.4 0.11 2.3E-06 58.3 5.3 38 982-1019 62-102 (237)
439 PRK00300 gmk guanylate kinase; 93.4 0.078 1.7E-06 56.7 4.2 27 983-1009 4-30 (205)
440 TIGR00064 ftsY signal recognit 93.4 0.2 4.2E-06 57.2 7.6 36 983-1018 71-109 (272)
441 cd03115 SRP The signal recogni 93.4 0.097 2.1E-06 54.7 4.7 34 986-1019 2-38 (173)
442 TIGR03878 thermo_KaiC_2 KaiC d 93.4 0.1 2.2E-06 58.8 5.2 37 982-1018 34-73 (259)
443 TIGR03263 guanyl_kin guanylate 93.3 0.055 1.2E-06 56.6 2.8 25 986-1010 3-27 (180)
444 PTZ00301 uridine kinase; Provi 93.3 0.89 1.9E-05 50.1 12.2 25 984-1008 3-27 (210)
445 PRK09354 recA recombinase A; P 93.3 0.18 3.8E-06 59.5 7.1 40 983-1022 59-101 (349)
446 PRK06067 flagellar accessory p 93.3 0.13 2.8E-06 56.6 5.7 40 978-1018 20-62 (234)
447 PRK08356 hypothetical protein; 93.2 0.082 1.8E-06 56.7 4.0 32 985-1019 6-37 (195)
448 PF13604 AAA_30: AAA domain; P 93.2 0.22 4.7E-06 53.9 7.1 34 985-1018 19-55 (196)
449 PF03266 NTPase_1: NTPase; In 93.1 0.1 2.2E-06 55.4 4.4 27 986-1012 1-30 (168)
450 cd01672 TMPK Thymidine monopho 93.1 0.11 2.4E-06 54.4 4.7 31 987-1017 3-36 (200)
451 PRK11545 gntK gluconate kinase 93.1 0.071 1.5E-06 55.9 3.1 25 990-1014 1-25 (163)
452 PF00485 PRK: Phosphoribulokin 93.0 0.075 1.6E-06 56.9 3.3 23 987-1009 2-24 (194)
453 PLN02748 tRNA dimethylallyltra 93.0 0.15 3.2E-06 62.3 6.2 39 985-1023 23-61 (468)
454 PF10443 RNA12: RNA12 protein; 93.0 0.56 1.2E-05 56.5 10.8 36 985-1022 18-55 (431)
455 COG5271 MDN1 AAA ATPase contai 93.0 0.28 6E-06 65.9 8.6 114 986-1102 890-1045(4600)
456 PRK14738 gmk guanylate kinase; 92.9 0.086 1.9E-06 57.3 3.6 29 983-1012 12-40 (206)
457 cd01128 rho_factor Transcripti 92.9 0.23 5.1E-06 55.9 7.0 26 985-1010 17-42 (249)
458 TIGR03881 KaiC_arch_4 KaiC dom 92.9 0.16 3.4E-06 55.5 5.6 37 982-1018 18-57 (229)
459 PF00437 T2SE: Type II/IV secr 92.9 0.11 2.4E-06 58.3 4.5 55 945-1011 100-154 (270)
460 cd00544 CobU Adenosylcobinamid 92.8 0.24 5.2E-06 52.6 6.7 45 987-1031 2-51 (169)
461 PRK06761 hypothetical protein; 92.8 0.1 2.2E-06 59.8 4.2 32 985-1016 4-35 (282)
462 PF08423 Rad51: Rad51; InterP 92.8 0.18 3.9E-06 56.9 6.1 35 985-1019 38-82 (256)
463 TIGR00017 cmk cytidylate kinas 92.8 0.099 2.1E-06 57.6 3.9 29 986-1014 4-32 (217)
464 PF10662 PduV-EutP: Ethanolami 92.8 0.41 8.8E-06 49.9 8.1 112 985-1108 2-119 (143)
465 PRK03846 adenylylsulfate kinas 92.7 0.14 3E-06 55.1 4.9 39 983-1021 23-64 (198)
466 TIGR03499 FlhF flagellar biosy 92.7 0.24 5.2E-06 56.6 6.9 36 984-1019 194-234 (282)
467 PRK14732 coaE dephospho-CoA ki 92.7 0.38 8.2E-06 52.2 8.1 30 987-1019 2-31 (196)
468 cd00071 GMPK Guanosine monopho 92.6 0.1 2.3E-06 53.2 3.6 26 987-1012 2-27 (137)
469 PRK00023 cmk cytidylate kinase 92.6 0.096 2.1E-06 57.9 3.6 30 985-1014 5-34 (225)
470 PRK05703 flhF flagellar biosyn 92.5 0.69 1.5E-05 56.0 10.9 36 984-1019 221-261 (424)
471 PRK08533 flagellar accessory p 92.5 0.19 4.2E-06 55.7 5.7 35 983-1017 23-60 (230)
472 TIGR01663 PNK-3'Pase polynucle 92.5 0.38 8.3E-06 59.6 8.8 96 981-1102 366-468 (526)
473 PF12780 AAA_8: P-loop contain 92.5 3.2 7E-05 47.5 15.5 58 950-1019 9-66 (268)
474 PF13479 AAA_24: AAA domain 92.5 0.096 2.1E-06 57.2 3.3 20 985-1004 4-23 (213)
475 PRK14974 cell division protein 92.5 0.27 5.8E-06 57.8 7.1 37 983-1019 139-178 (336)
476 PRK12608 transcription termina 92.5 0.25 5.3E-06 58.8 6.8 25 986-1010 135-159 (380)
477 PRK09518 bifunctional cytidyla 92.4 0.11 2.3E-06 66.7 4.0 30 986-1015 3-32 (712)
478 TIGR01613 primase_Cterm phage/ 92.4 0.18 3.9E-06 58.0 5.4 51 955-1013 55-105 (304)
479 KOG2543 Origin recognition com 92.4 0.79 1.7E-05 54.4 10.6 61 950-1021 7-67 (438)
480 PLN00020 ribulose bisphosphate 92.4 0.73 1.6E-05 54.9 10.4 33 493-527 148-181 (413)
481 PLN02318 phosphoribulokinase/u 92.4 1.7 3.8E-05 54.6 14.0 25 984-1008 65-89 (656)
482 cd01134 V_A-ATPase_A V/A-type 92.3 0.36 7.9E-06 57.0 7.8 29 985-1013 158-186 (369)
483 PRK04328 hypothetical protein; 92.3 0.2 4.2E-06 56.2 5.5 41 978-1019 18-61 (249)
484 PF00448 SRP54: SRP54-type pro 92.3 0.11 2.5E-06 56.2 3.6 25 984-1008 1-25 (196)
485 PRK06851 hypothetical protein; 92.3 0.16 3.4E-06 60.4 4.9 44 985-1028 215-261 (367)
486 cd01123 Rad51_DMC1_radA Rad51_ 92.3 0.2 4.4E-06 54.6 5.5 30 978-1008 14-43 (235)
487 PRK14737 gmk guanylate kinase; 92.2 0.13 2.8E-06 55.4 3.7 25 984-1008 4-28 (186)
488 COG5245 DYN1 Dynein, heavy cha 92.2 0.67 1.4E-05 62.1 10.4 119 983-1107 1493-1661(3164)
489 COG3283 TyrR Transcriptional r 92.1 1 2.2E-05 53.1 10.9 38 986-1023 229-269 (511)
490 PRK04841 transcriptional regul 92.1 1.2 2.7E-05 57.9 13.2 33 984-1017 32-64 (903)
491 PRK10536 hypothetical protein; 92.1 0.11 2.5E-06 58.7 3.3 22 986-1007 76-97 (262)
492 PF01202 SKI: Shikimate kinase 92.1 0.092 2E-06 54.5 2.4 25 993-1017 1-25 (158)
493 cd00046 DEXDc DEAD-like helica 92.1 0.13 2.7E-06 49.4 3.2 24 986-1009 2-25 (144)
494 PF04851 ResIII: Type III rest 92.1 0.31 6.8E-06 50.0 6.3 34 984-1017 25-58 (184)
495 cd00984 DnaB_C DnaB helicase C 91.9 0.21 4.6E-06 54.7 5.2 38 982-1019 11-52 (242)
496 TIGR03880 KaiC_arch_3 KaiC dom 91.9 0.26 5.6E-06 53.8 5.7 41 978-1019 11-54 (224)
497 PRK12337 2-phosphoglycerate ki 91.9 0.16 3.5E-06 61.7 4.4 35 983-1017 254-289 (475)
498 PRK00081 coaE dephospho-CoA ki 91.8 0.17 3.6E-06 54.6 4.1 30 985-1015 3-32 (194)
499 PRK08099 bifunctional DNA-bind 91.8 0.15 3.3E-06 61.1 4.2 30 985-1014 220-249 (399)
500 PF10236 DAP3: Mitochondrial r 91.8 3.2 7E-05 48.3 14.8 46 1085-1131 258-307 (309)
No 1
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-54 Score=482.35 Aligned_cols=352 Identities=58% Similarity=0.896 Sum_probs=317.7
Q ss_pred cccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHHhhhhhhhhhhhhhhh-cccChhHHHHHH
Q 000921 856 LCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLK-DVVTENEFEKKL 934 (1223)
Q Consensus 856 La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~lq~i~~~~~~~~~al~-evv~~~e~e~~l 934 (1223)
.+..+..+...-|+.++.||++||..++..+..++ +..++.+++.++...+++.... .+++ +++..++|+..+
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i 77 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRI 77 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHh
Confidence 34455667788899999999999999887666555 7889999999987777655432 3444 378899999999
Q ss_pred hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 935 LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 935 l~~vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
..++++|.++.|+|+||||++.+++++++.|.+|+++|++|..+++..|++|||||||||||||++|+|+|+++|++|+.
T Consensus 78 ~s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn 157 (386)
T KOG0737|consen 78 ASDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN 157 (386)
T ss_pred hhcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccch----------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1015 ISMSSITSK----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1015 Vs~seL~sk----------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
|+++.++++ ||++++.| ...+|+++..+.++||..|||+.++.+.+|+|+|
T Consensus 158 v~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 158 VSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred eeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 999998876 78889999 6789999999999999999999999888999999
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1146 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireil 1146 (1223)
|||||.+||+|++||++++++|++|+..+|.+||+.+++++++.+++|+.++|.+|+||||+||+++|+.|++.++|+++
T Consensus 237 ATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~ 316 (386)
T KOG0737|consen 237 ATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELL 316 (386)
T ss_pred CCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH--HHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccccccccccchhHhhhcCCCCcC
Q 000921 1147 EKE--KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSR 1214 (1223)
Q Consensus 1147 ek~--kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~~~~~p~v~WnDIGGl~~vK 1214 (1223)
+++ ..+.+...++..+.+.....-..|+++++||.+|+.++.+++..+...|....+|++.||++++|
T Consensus 317 ~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 317 VSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred HhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 886 33334445555555555556678999999999999999999998888999999999999999876
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-50 Score=462.21 Aligned_cols=361 Identities=32% Similarity=0.486 Sum_probs=274.6
Q ss_pred hhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhhHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhh
Q 000921 799 RLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALS 877 (1223)
Q Consensus 799 ~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S 877 (1223)
=||+.-|.|+.|++..|..|+. +..+ .-.++.+ |+..||.+|-.|-||++..|+..|..
T Consensus 350 GRFdrEI~l~vP~e~aR~~IL~----------------~~~~----~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~ 409 (802)
T KOG0733|consen 350 GRFDREICLGVPSETAREEILR----------------IICR----GLRLSGDFDFKQLAKLTPGFVGADLMALCREAAF 409 (802)
T ss_pred ccccceeeecCCchHHHHHHHH----------------HHHh----hCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHH
Confidence 3799999999999999999998 2222 2234445 78889999999999999999999988
Q ss_pred hhhhccCCCCC----C-----C---Cc-------eeecchhHH-HHHH-HHh-hhhhhhhhhhhhhhc--ccChhHHHHH
Q 000921 878 HHFMHCSEAPG----K-----D---AK-------LKISTESIM-YGLN-ILQ-GIQSESKSLKKSLKD--VVTENEFEKK 933 (1223)
Q Consensus 878 ~al~~~~~~~~----~-----~---~k-------l~Is~esl~-~~l~-~lq-~i~~~~~~~~~al~e--vv~~~e~e~~ 933 (1223)
.++.|..+... . + .. +.++..... .-++ .++ .+.+......+...+ .+.-++|++.
T Consensus 410 vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~A 489 (802)
T KOG0733|consen 410 VAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEA 489 (802)
T ss_pred HHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHH
Confidence 88877533110 0 0 00 111110000 0011 111 111111111111111 1345566665
Q ss_pred HhcCCCCCC--------CCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 000921 934 LLADVIPPS--------DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005 (1223)
Q Consensus 934 ll~~vI~~~--------e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA 1005 (1223)
+.. |.|+ -|+|+|+||||+++++.+|+.+|.+|+++|++|...|+. +|.|||||||||||||+||||+|
T Consensus 490 l~~--iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~-~PsGvLL~GPPGCGKTLlAKAVA 566 (802)
T KOG0733|consen 490 LSK--IQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID-APSGVLLCGPPGCGKTLLAKAVA 566 (802)
T ss_pred HHh--cCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC-CCCceEEeCCCCccHHHHHHHHh
Confidence 421 2221 258999999999999999999999999999999999965 46999999999999999999999
Q ss_pred HHhCCceeEeecccccch----------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCC
Q 000921 1006 TEAGANFINISMSSITSK----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1057 (1223)
Q Consensus 1006 ~elg~pfI~Vs~seL~sk----------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k 1057 (1223)
+|+|++||.|.+++|+.+ ||+|+++|...+ .....|++|+||++|||+..
T Consensus 567 NEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~- 644 (802)
T KOG0733|consen 567 NEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEE- 644 (802)
T ss_pred hhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhccccc-
Confidence 999999999999998766 899999988755 66678999999999999974
Q ss_pred CCccEEEEeecCCCCCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHh--hcccCCcccHHHHHHHcc--CCcHHHHH
Q 000921 1058 DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILA--KEELASDVDLEGIANMAD--GYSGSDLK 1131 (1223)
Q Consensus 1058 ~~~rVLVIATTNrp~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~--k~~l~~dvDL~~LA~~Te--GySGaDL~ 1131 (1223)
+.+|+||||||||+.+|+|++| |||+.++|++|+.++|..||+.+++ +.++..|+||++||+.+. ||||+||.
T Consensus 645 -R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa 723 (802)
T KOG0733|consen 645 -RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA 723 (802)
T ss_pred -ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHH
Confidence 4789999999999999999999 9999999999999999999999999 778889999999999877 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccccc
Q 000921 1132 NLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1195 (1223)
Q Consensus 1132 ~L~~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~ 1195 (1223)
.||++|++.|+++-+..... +... .........+|+.||.+|+++++||++...
T Consensus 724 aLvreAsi~AL~~~~~~~~~--------~~~~--~~~~~~~~~~t~~hF~eA~~~i~pSv~~~d 777 (802)
T KOG0733|consen 724 ALVREASILALRESLFEIDS--------SEDD--VTVRSSTIIVTYKHFEEAFQRIRPSVSERD 777 (802)
T ss_pred HHHHHHHHHHHHHHHhhccc--------cCcc--cceeeeeeeecHHHHHHHHHhcCCCccHHH
Confidence 99999999999986652221 1100 000001345899999999999999998653
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-49 Score=460.92 Aligned_cols=365 Identities=31% Similarity=0.506 Sum_probs=304.6
Q ss_pred CCC-CEEEEEcchhhhhcc--------ChhHHHHHHHHhccCC--CCEEEEEeccCCCcccccCCCCCceeeccCcchhh
Q 000921 702 KSS-PLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTA 770 (1223)
Q Consensus 702 ~~~-plIlyi~Dvek~l~~--------~~~~~~~~~~~l~~~~--~~~~ii~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1223)
+.+ |.|+||.|++- +++ ..+....|...++.+. +.+|||++...++
T Consensus 275 k~~~psii~IdEld~-l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~---------------------- 331 (693)
T KOG0730|consen 275 KFQVPSIIFIDELDA-LCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD---------------------- 331 (693)
T ss_pred ccCCCeeEeHHhHhh-hCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc----------------------
Confidence 355 99999999998 553 4556666777777777 6999999998532
Q ss_pred hccccCCCCcccccccccccHHHHHHHHh-hCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhhHHHHhhhCCCC
Q 000921 771 LLDLAFPDNFSRLHDRSKETPKALKQISR-LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLD 849 (1223)
Q Consensus 771 ~~~~~~~d~~~~~~~~~~~~~~~~~~l~~-rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih~~kml~~~~L~ 849 (1223)
.++ .++-+ ||..-|+|..|+..+|++|+. .|+.+|-.. +
T Consensus 332 --------sld-------------~alRRgRfd~ev~IgiP~~~~RldIl~----------------~l~k~~~~~---~ 371 (693)
T KOG0730|consen 332 --------SLD-------------PALRRGRFDREVEIGIPGSDGRLDILR----------------VLTKKMNLL---S 371 (693)
T ss_pred --------ccC-------------hhhhcCCCcceeeecCCCchhHHHHHH----------------HHHHhcCCc---c
Confidence 222 14444 899999999999999999998 666654333 2
Q ss_pred CCCccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHHhhhhhhhhhhhhhhhcccChhH
Q 000921 850 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENE 929 (1223)
Q Consensus 850 cddL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~lq~i~~~~~~~~~al~evv~~~e 929 (1223)
..+|..+|..+..|.|+++..+++.|.-.+..+ +.+++..++..+ .+..
T Consensus 372 ~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-------------~~~~~~~A~~~i-----------------~psa- 420 (693)
T KOG0730|consen 372 DVDLEDIAVSTHGYVGADLAALCREASLQATRR-------------TLEIFQEALMGI-----------------RPSA- 420 (693)
T ss_pred hhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-------------hHHHHHHHHhcC-----------------Cchh-
Confidence 348999999999999999999999887666532 223333332221 1111
Q ss_pred HHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000921 930 FEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1223)
Q Consensus 930 ~e~~ll~~vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg 1009 (1223)
. ..++ ..-++++|+||||++++|.+|++.|.+|+++|+.|.+.| ..||+|||||||||||||++|||||++++
T Consensus 421 ~-----Re~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G-i~ppkGVLlyGPPGC~KT~lAkalAne~~ 493 (693)
T KOG0730|consen 421 L-----REIL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG-ISPPKGVLLYGPPGCGKTLLAKALANEAG 493 (693)
T ss_pred h-----hhee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc-CCCCceEEEECCCCcchHHHHHHHhhhhc
Confidence 0 0111 234589999999999999999999999999999999999 46789999999999999999999999999
Q ss_pred CceeEeecccccch----------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCcc
Q 000921 1010 ANFINISMSSITSK----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1061 (1223)
Q Consensus 1010 ~pfI~Vs~seL~sk----------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~r 1061 (1223)
++|+.|.+++++++ ||++.+.|+. ..+.+.+|++++||++|||+... .+
T Consensus 494 ~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g-~~~~v~~RVlsqLLtEmDG~e~~--k~ 570 (693)
T KOG0730|consen 494 MNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG-SSSGVTDRVLSQLLTEMDGLEAL--KN 570 (693)
T ss_pred CCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC-CccchHHHHHHHHHHHccccccc--Cc
Confidence 99999999998776 8999999974 34478899999999999999754 68
Q ss_pred EEEEeecCCCCCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHH
Q 000921 1062 VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAH 1139 (1223)
Q Consensus 1062 VLVIATTNrp~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~ 1139 (1223)
|+|||+||||+.||+|++| |||+.||||+||.+.|.+||+.+++++++.+++|++.||+.|+||||+||.++|++|+.
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~ 650 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAAL 650 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCcccccc
Q 000921 1140 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1194 (1223)
Q Consensus 1140 ~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e 1194 (1223)
.|+++.++ ...|+.+||.+|++.++++.+..
T Consensus 651 ~a~~e~i~------------------------a~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 651 LALRESIE------------------------ATEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred HHHHHhcc------------------------cccccHHHHHHHHHhhcccCCHH
Confidence 99998543 35589999999999999998765
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-45 Score=429.08 Aligned_cols=407 Identities=28% Similarity=0.440 Sum_probs=304.5
Q ss_pred HHHHHHHhhcccCCCCEEEEEcchhhhhc---c--ChhHHHHHHHHhc----cCC-CCEEEEEeccCCCcccccCCCCCc
Q 000921 690 INELFEVALNESKSSPLIVFVKDIEKSLT---G--NNDAYGALKSKLE----NLP-SNVVVIGSHTQLDSRKEKSHPGGL 759 (1223)
Q Consensus 690 i~~L~eVl~s~s~~~plIlyi~Dvek~l~---~--~~~~~~~~~~~l~----~~~-~~~~ii~s~~~~~~~~~~~~~~~~ 759 (1223)
++..|.-.. ++.|.||||++.+-+.. | .-+....++-.+. +.+ +++++||+....++
T Consensus 479 l~~~f~~a~---~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~---------- 545 (953)
T KOG0736|consen 479 LQAIFSRAR---RCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED---------- 545 (953)
T ss_pred HHHHHHHHh---hcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc----------
Confidence 455555443 47999999999998543 1 1233344444443 323 37888888774222
Q ss_pred eeeccCcchhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhhH
Q 000921 760 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISI 839 (1223)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih~ 839 (1223)
+|+ .+-..|...|++..|+|+.|++|++-.
T Consensus 546 ---------------lp~------------------~i~~~f~~ei~~~~lse~qRl~iLq~y----------------- 575 (953)
T KOG0736|consen 546 ---------------LPA------------------DIQSLFLHEIEVPALSEEQRLEILQWY----------------- 575 (953)
T ss_pred ---------------CCH------------------HHHHhhhhhccCCCCCHHHHHHHHHHH-----------------
Confidence 232 466778888999999999999998721
Q ss_pred HHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhhhhhcc------------CCCCCCCCceeecchhHHHHHHH
Q 000921 840 RSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHFMHC------------SEAPGKDAKLKISTESIMYGLNI 906 (1223)
Q Consensus 840 ~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~------------~~~~~~~~kl~Is~esl~~~l~~ 906 (1223)
+.+..++.+ .+..++.++.+|+..+++.++....-.+..+- .+..+......+..+++..++..
T Consensus 576 ---~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~ 652 (953)
T KOG0736|consen 576 ---LNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSR 652 (953)
T ss_pred ---HhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHH
Confidence 122223333 55567777888888888887755421111110 00001111133555555555544
Q ss_pred HhhhhhhhhhhhhhhhcccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCce
Q 000921 907 LQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG 986 (1223)
Q Consensus 907 lq~i~~~~~~~~~al~evv~~~e~e~~ll~~vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprG 986 (1223)
++ .+|...+. .|.-|+|+|+||||++++|.+|.+.|.+||++|++|..+ .++..|
T Consensus 653 ~~-------------------~~fs~aiG----APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSG 707 (953)
T KOG0736|consen 653 LQ-------------------KEFSDAIG----APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSG 707 (953)
T ss_pred HH-------------------HhhhhhcC----CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccce
Confidence 33 22333333 334458999999999999999999999999999999865 456689
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch----------------------------hhhcccccCCCChh-
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----------------------------VDSMLGRRENPGEH- 1037 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk----------------------------IDsI~g~R~s~~e~- 1037 (1223)
||||||||||||++|||+|.|+..+|+.|.+++|+.+ +|++.+.|+..++.
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG 787 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG 787 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc
Confidence 9999999999999999999999999999999997654 89999999987654
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHc--ccCceeeecCC-CHHHHHHHHHHHHhhcccCCccc
Q 000921 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLP-DAPNREKIIRVILAKEELASDVD 1114 (1223)
Q Consensus 1038 e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlR--RFd~~I~VplP-d~eeR~~ILr~~L~k~~l~~dvD 1114 (1223)
..|+|++.+||.+|||+.......|+||||||||+.|||+|+| |||+-++++++ |.+.+.+||++..+++.++.++|
T Consensus 788 GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd 867 (953)
T KOG0736|consen 788 GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD 867 (953)
T ss_pred ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC
Confidence 5899999999999999987677899999999999999999999 99999999998 56778999999999999999999
Q ss_pred HHHHHHHcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccc
Q 000921 1115 LEGIANMAD-GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1193 (1223)
Q Consensus 1115 L~~LA~~Te-GySGaDL~~L~~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~ 1193 (1223)
+.++|+.++ .|||||+.+||..|++.|++|.+....... . .........-.|+|+||.+|+++++||+++
T Consensus 868 L~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~-------~--~~~e~~~~~v~V~~eDflks~~~l~PSvS~ 938 (953)
T KOG0736|consen 868 LVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGT-------I--SEEEQESSSVRVTMEDFLKSAKRLQPSVSE 938 (953)
T ss_pred HHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhcc-------c--cccccCCceEEEEHHHHHHHHHhcCCcccH
Confidence 999999998 799999999999999999999776554210 0 001122344579999999999999999987
Q ss_pred ccc
Q 000921 1194 EST 1196 (1223)
Q Consensus 1194 e~~ 1196 (1223)
...
T Consensus 939 ~EL 941 (953)
T KOG0736|consen 939 QEL 941 (953)
T ss_pred HHH
Confidence 633
No 5
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-44 Score=399.59 Aligned_cols=220 Identities=40% Similarity=0.672 Sum_probs=203.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
..|.++|+||||+++++++|+|.|.+||.+|++|.+.|+ .||+|||||||||||||+||||+|++.++.||+|.+++|+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 456899999999999999999999999999999999994 6889999999999999999999999999999999999987
Q ss_pred ch----------------------------hhhcccccCCCC--hhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCC
Q 000921 1022 SK----------------------------VDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 sk----------------------------IDsI~g~R~s~~--e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp 1071 (1223)
.+ ||+|.++|.+.+ .....+|.+-+||++|||+.+. ++|=||+||||+
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~ 300 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRP 300 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCc
Confidence 65 899999998753 3345677888999999999875 779999999999
Q ss_pred CCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1072 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1072 ~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~ 1149 (1223)
+.|||||+| |||+.|+||+||.+.|.+||+.|.+++++..++||+.||+.|+|+|||||+++|.+|.|.|+|+
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~----- 375 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE----- 375 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh-----
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCcc
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1190 (1223)
Q Consensus 1150 kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS 1190 (1223)
....+||+||.+|.+++...
T Consensus 376 ---------------------~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 376 ---------------------RRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred ---------------------ccCeecHHHHHHHHHHHHhc
Confidence 34679999999999988654
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-44 Score=415.63 Aligned_cols=270 Identities=32% Similarity=0.556 Sum_probs=234.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch
Q 000921 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1223)
Q Consensus 944 ~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk 1023 (1223)
.++.|.||||++.+..+|.+++.+ +++|+.|...|+ .|++|||||||||||||+||+|||.++++||+.|++.++++.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 378999999999999999999999 999999999995 688999999999999999999999999999999999987754
Q ss_pred ----------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCC--CccEEEEeecCCCCC
Q 000921 1024 ----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFD 1073 (1223)
Q Consensus 1024 ----------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~--~~rVLVIATTNrp~~ 1073 (1223)
||+|.++|.+ ...+..+||+.+||+.||++.... +.+|+||||||||+.
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 8889999987 456677899999999999997542 478999999999999
Q ss_pred CCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1074 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1151 (1223)
Q Consensus 1074 LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk 1151 (1223)
||++|+| |||++|.++.|+..+|.+||+.++++..+..++|+..||++|+||+|+||.+||.+|++.|++|+++....
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~ 421 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSS 421 (802)
T ss_pred cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999885441
Q ss_pred --HH-H---------HHHhh------------------------ccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccccc
Q 000921 1152 --ER-A---------LALAE------------------------NRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1195 (1223)
Q Consensus 1152 --~~-~---------~~~~e------------------------~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~ 1195 (1223)
.. . ...+. +.+.+..........|+++||..|+..+|||..+++
T Consensus 422 p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREG 501 (802)
T KOG0733|consen 422 PLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREG 501 (802)
T ss_pred ccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhccc
Confidence 00 0 00000 000000011123456899999999999999999999
Q ss_pred cccccchhHhhhcCCCCcCcc
Q 000921 1196 TNMNELLQWNELYGEGGSRKR 1216 (1223)
Q Consensus 1196 ~~~~p~v~WnDIGGl~~vKKk 1216 (1223)
...+|.|.|+||||++.+|..
T Consensus 502 F~tVPdVtW~dIGaL~~vR~e 522 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRLE 522 (802)
T ss_pred ceecCCCChhhcccHHHHHHH
Confidence 999999999999999999864
No 7
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-44 Score=398.26 Aligned_cols=257 Identities=40% Similarity=0.685 Sum_probs=227.9
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccc
Q 000921 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1223)
Q Consensus 941 ~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL 1020 (1223)
...+++.|+||.|+.++|+-|+|.|.+|+..|+.|. |+.+|++||||+||||||||+||||||.|++..||.|+.+.+
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 345689999999999999999999999999999997 458999999999999999999999999999999999999998
Q ss_pred cch----------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCC--CccEEEEeecCC
Q 000921 1021 TSK----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNR 1070 (1223)
Q Consensus 1021 ~sk----------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~--~~rVLVIATTNr 1070 (1223)
.++ ||+|+.+|++.++|++.+|++++||++|||+.... ...|+|+|+||.
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~ 361 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF 361 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCC
Confidence 776 89999999999999999999999999999997543 134999999999
Q ss_pred CCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1071 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1150 (1223)
Q Consensus 1071 p~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~k 1150 (1223)
||+||+|++|||.++|+||+|+.+.|..+|+..++...+.++++++.||+.++||||+||.++|++|+|.++||.+....
T Consensus 362 PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~ 441 (491)
T KOG0738|consen 362 PWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLT 441 (491)
T ss_pred CcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765543
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccccccccccchhHhhhcCC
Q 000921 1151 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1210 (1223)
Q Consensus 1151 k~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~~~~~p~v~WnDIGGl 1210 (1223)
.+.-... ....-..|++++||+.|+.+++||++.. .+-.+.+|.+-||.
T Consensus 442 ~~ei~~l---------akE~~~~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 442 PREIRQL---------AKEEPKMPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred cHHhhhh---------hhhccccccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 2211111 1111227899999999999999999865 34566799999995
No 8
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.9e-40 Score=411.29 Aligned_cols=417 Identities=32% Similarity=0.476 Sum_probs=312.3
Q ss_pred HHHHHHHhhcccCCCCEEEEEcchhhhhccC--------hhHHHHHHHHhccCC--CCEEEEEeccCCCcccccCCCCCc
Q 000921 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGL 759 (1223)
Q Consensus 690 i~~L~eVl~s~s~~~plIlyi~Dvek~l~~~--------~~~~~~~~~~l~~~~--~~~~ii~s~~~~~~~~~~~~~~~~ 759 (1223)
+..+|+.+.. ..|-||||+|++.+.... .++.+.|-..++.+. +.++|||+.+..
T Consensus 260 l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~------------ 324 (733)
T TIGR01243 260 LREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRP------------ 324 (733)
T ss_pred HHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCCh------------
Confidence 4455555543 679999999999865421 233444555555553 478999887731
Q ss_pred eeeccCcchhhhccccCCCCcccccccccccHHHHHHHHh--hCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhh
Q 000921 760 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNII 837 (1223)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~--rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~i 837 (1223)
+.++ .+|.+ ||...|+|.+|+.+.|.+||+ .
T Consensus 325 ------------------~~ld-------------~al~r~gRfd~~i~i~~P~~~~R~~Il~----------------~ 357 (733)
T TIGR01243 325 ------------------DALD-------------PALRRPGRFDREIVIRVPDKRARKEILK----------------V 357 (733)
T ss_pred ------------------hhcC-------------HHHhCchhccEEEEeCCcCHHHHHHHHH----------------H
Confidence 1111 13333 788999999999999999998 3
Q ss_pred hHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhhhhhccCCCCCC-----------CCceeecchhHHHHHH
Q 000921 838 SIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-----------DAKLKISTESIMYGLN 905 (1223)
Q Consensus 838 h~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~-----------~~kl~Is~esl~~~l~ 905 (1223)
++..+ .+..+ ++..++..+..|+++++..++..|...++.+....... ...+.++.+++..++
T Consensus 358 ~~~~~----~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al- 432 (733)
T TIGR01243 358 HTRNM----PLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEAL- 432 (733)
T ss_pred HhcCC----CCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHH-
Confidence 43321 23333 78889999999999999999998887777553221100 011223333333333
Q ss_pred HHhhhhhhhhhhhhhhhcccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCc
Q 000921 906 ILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK 985 (1223)
Q Consensus 906 ~lq~i~~~~~~~~~al~evv~~~e~e~~ll~~vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~Ppr 985 (1223)
..+.+... ... ....+.++|+||+|++.+++.|++.+.+|+.++++|.+.|+ .+++
T Consensus 433 ----------------~~v~ps~~------~~~-~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~ 488 (733)
T TIGR01243 433 ----------------KMVEPSAI------REV-LVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPK 488 (733)
T ss_pred ----------------hhcccccc------chh-hccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCc
Confidence 22222110 000 01124689999999999999999999999999999999885 5679
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch----------------------------hhhcccccCCCChh
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----------------------------VDSMLGRRENPGEH 1037 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk----------------------------IDsI~g~R~s~~e~ 1037 (1223)
|+|||||||||||++|+++|++++++|+.+++++++++ ||.|++.|......
T Consensus 489 giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~ 568 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDT 568 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCc
Confidence 99999999999999999999999999999998876543 77788877765455
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccH
Q 000921 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL 1115 (1223)
Q Consensus 1038 e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL 1115 (1223)
...++++++||.+||++.. ..+++||+|||+|+.||++++| ||++.|+||+|+.++|.+||+.++.+.++..++|+
T Consensus 569 ~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l 646 (733)
T TIGR01243 569 SVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL 646 (733)
T ss_pred cHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH
Confidence 5678899999999999864 3679999999999999999999 99999999999999999999999999988899999
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccccc
Q 000921 1116 EGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1195 (1223)
Q Consensus 1116 ~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~ 1195 (1223)
+.||..|+||||+||.++|++|++.++++.+.....+. ... ..........|+++||..|+++++||++.+
T Consensus 647 ~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~---~~~-----~~~~~~~~~~i~~~~f~~al~~~~ps~~~~- 717 (733)
T TIGR01243 647 EELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK---LEV-----GEEEFLKDLKVEMRHFLEALKKVKPSVSKE- 717 (733)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh---hhc-----ccccccccCcccHHHHHHHHHHcCCCCCHH-
Confidence 99999999999999999999999999998665322110 000 000111235799999999999999999876
Q ss_pred cccccchhHhhhcC
Q 000921 1196 TNMNELLQWNELYG 1209 (1223)
Q Consensus 1196 ~~~~p~v~WnDIGG 1209 (1223)
.+..+.+|...+|
T Consensus 718 -~~~~~~~~~~~~~ 730 (733)
T TIGR01243 718 -DMLRYERLAKELK 730 (733)
T ss_pred -HHHHHHHHHHHhc
Confidence 3467788988776
No 9
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-38 Score=346.95 Aligned_cols=272 Identities=36% Similarity=0.590 Sum_probs=227.2
Q ss_pred hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 935 LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 935 l~~vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
++..|-..+|+|.|+||.|++..|+.|+|.|.+|++.|.+|+.. .+|.+||||||||||||++||+|+|.|++..|+.
T Consensus 119 L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFS 196 (439)
T KOG0739|consen 119 LNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFS 196 (439)
T ss_pred hhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEE
Confidence 45566778899999999999999999999999999999999743 7899999999999999999999999999999999
Q ss_pred eecccccch----------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1015 ISMSSITSK----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1015 Vs~seL~sk----------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
|+.++|+++ ||++++.|.. ++.+..+||..+||++|.|... ++..|+|++
T Consensus 197 vSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e-nEseasRRIKTEfLVQMqGVG~-d~~gvLVLg 274 (439)
T KOG0739|consen 197 VSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE-NESEASRRIKTEFLVQMQGVGN-DNDGVLVLG 274 (439)
T ss_pred eehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC-CchHHHHHHHHHHHHhhhcccc-CCCceEEEe
Confidence 999998876 7888887765 6788899999999999999875 568999999
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1145 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l-~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~airei 1145 (1223)
+||-||.||.|++|||+++|++|+|+...|..+++.++...+. ..+.|+.+|+++|+||+|+||.-+++.|.|.++|++
T Consensus 275 ATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred cCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHh
Confidence 9999999999999999999999999999999999999988643 367899999999999999999999999999999986
Q ss_pred HHHHHHHHHHH---HhhccCCCCCCCC-----------------CCCCCCCHHHHHHHHHhcCccccccccccccchhHh
Q 000921 1146 LEKEKKERALA---LAENRASPPLYSS-----------------VDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1205 (1223)
Q Consensus 1146 lek~kk~~~~~---~~e~~~~~~~~~~-----------------~~~rpLT~eDF~~ALe~v~PS~s~e~~~~~p~v~Wn 1205 (1223)
.....-.+... ..+-...-..++. .-..+|||.||.+++...+|++..+.. ....+++
T Consensus 355 qsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl--~k~~~Ft 432 (439)
T KOG0739|consen 355 QSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDL--LKHEKFT 432 (439)
T ss_pred hhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHH--HHHHHHH
Confidence 54433211000 0000001111111 114589999999999999999987633 3456888
Q ss_pred hhcCCCC
Q 000921 1206 ELYGEGG 1212 (1223)
Q Consensus 1206 DIGGl~~ 1212 (1223)
+-||.++
T Consensus 433 ~dFGqEg 439 (439)
T KOG0739|consen 433 EDFGQEG 439 (439)
T ss_pred HhhccCC
Confidence 8888765
No 10
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-36 Score=357.31 Aligned_cols=321 Identities=35% Similarity=0.508 Sum_probs=263.7
Q ss_pred HHHhhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhhHHHHhhhCCCCCCCccccccccccCChHHHHHHHhhh
Q 000921 796 QISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWA 875 (1223)
Q Consensus 796 ~l~~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih~~kml~~~~L~cddL~~La~~tk~~sgaeIe~LV~sA 875 (1223)
..-.+|...++|.+|+..++++++. +|+..|...+ ..++..++..+..+.++++..+++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~ei~~----------------~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~l~~~~ 196 (494)
T COG0464 136 RRPGRFDREIEVNLPDEAGRLEILQ----------------IHTRLMFLGP---PGTGKTLAARTVGKSGADLGALAKEA 196 (494)
T ss_pred hCccccceeeecCCCCHHHHHHHHH----------------HHHhcCCCcc---cccHHHHHHhcCCccHHHHHHHHHHH
Confidence 3556788999999999999999998 7776555444 34888999999999999999999888
Q ss_pred hhhhhhccCCCCCCCCceeecchhHHHHHHHHhhhhhhhhhhhhhhhcccChhHHHHHHhcCCCCCCCCCCCcccccCcH
Q 000921 876 LSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALE 955 (1223)
Q Consensus 876 ~S~al~~~~~~~~~~~kl~Is~esl~~~l~~lq~i~~~~~~~~~al~evv~~~e~e~~ll~~vI~~~e~~vtfdDIgGle 955 (1223)
...+..+.. ......+.++.+++..++.. +... ..+-...+.++|+|+||++
T Consensus 197 ~~~~~~r~~--~~~~~~~~~~~~~~~~~l~~-----------------~~~~---------~~~~~~~~~v~~~diggl~ 248 (494)
T COG0464 197 ALRELRRAI--DLVGEYIGVTEDDFEEALKK-----------------VLPS---------RGVLFEDEDVTLDDIGGLE 248 (494)
T ss_pred HHHHHHhhh--ccCcccccccHHHHHHHHHh-----------------cCcc---------cccccCCCCcceehhhcHH
Confidence 877775432 00111233333333333222 2221 1122345579999999999
Q ss_pred HHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch------------
Q 000921 956 NVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK------------ 1023 (1223)
Q Consensus 956 ~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk------------ 1023 (1223)
.+++.+++.+.+|+.+++.|.+.+ ..+++|+|||||||||||+||+|+|.+++.+|+.+..++++++
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~ 327 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIREL 327 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHH
Confidence 999999999999999999998866 4567899999999999999999999999999999999988775
Q ss_pred ----------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHc--ccCce
Q 000921 1024 ----------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRR 1085 (1223)
Q Consensus 1024 ----------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlR--RFd~~ 1085 (1223)
+|+++..|..... ....+++++||.+|+++... ..|+||+|||+|+.+|++++| ||++.
T Consensus 328 F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~ 404 (494)
T COG0464 328 FEKARKLAPSIIFIDEIDSLASGRGPSED-GSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGRFDRL 404 (494)
T ss_pred HHHHHcCCCcEEEEEchhhhhccCCCCCc-hHHHHHHHHHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCccceE
Confidence 7888888875432 22368999999999999754 669999999999999999999 99999
Q ss_pred eeecCCCHHHHHHHHHHHHhhcc--cCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 000921 1086 LMVNLPDAPNREKIIRVILAKEE--LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRAS 1163 (1223)
Q Consensus 1086 I~VplPd~eeR~~ILr~~L~k~~--l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk~~~~~~~e~~~~ 1163 (1223)
|+||+||..+|.+||+.++.... +..++++..+++.|+||+|+||.++|++|++.++++..
T Consensus 405 i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~----------------- 467 (494)
T COG0464 405 IYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR----------------- 467 (494)
T ss_pred eecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 99999999999999999999654 35789999999999999999999999999999998622
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhcCcccc
Q 000921 1164 PPLYSSVDVRPLKMDDFKYAHEQVCASVS 1192 (1223)
Q Consensus 1164 ~~~~~~~~~rpLT~eDF~~ALe~v~PS~s 1192 (1223)
...++++||..|+++++|++.
T Consensus 468 --------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 468 --------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred --------cCCccHHHHHHHHHhcCCCCC
Confidence 467999999999999999975
No 11
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-36 Score=354.85 Aligned_cols=299 Identities=30% Similarity=0.477 Sum_probs=248.9
Q ss_pred hCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhhHHHHhhhCCCCC--CCccccccccccCChHHHHHHHhhhhh
Q 000921 800 LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDC--VDLESLCIKDQTLTTEGVEKIVGWALS 877 (1223)
Q Consensus 800 rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih~~kml~~~~L~c--ddL~~La~~tk~~sgaeIe~LV~sA~S 877 (1223)
+|..++.+..|+-+.|..|+.. . ..++.++| +||+.++.+|..|..-+++-+|..|+.
T Consensus 563 ~Fq~~~~L~ap~~~~R~~IL~~----------------~----~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~ 622 (952)
T KOG0735|consen 563 LFQIVIALPAPAVTRRKEILTT----------------I----FSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIH 622 (952)
T ss_pred ceEEEEecCCcchhHHHHHHHH----------------H----HHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHH
Confidence 7888899999999999999981 1 11222233 377779999999999999999999999
Q ss_pred hhhhccCCCCCCCCceeecchhHHHHHHHHhhhhhhhhhhhhhhhcccChhHHHHHHhcCCCCCCCCCCCcccccCcHHH
Q 000921 878 HHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENV 957 (1223)
Q Consensus 878 ~al~~~~~~~~~~~kl~Is~esl~~~l~~lq~i~~~~~~~~~al~evv~~~e~e~~ll~~vI~~~e~~vtfdDIgGle~v 957 (1223)
+++.. ...+..+ .++.++|..++..+-.. + +.++---...++.|+||||+.++
T Consensus 623 ~a~le---ris~~~k-lltke~f~ksL~~F~P~---------a--------------LR~ik~~k~tgi~w~digg~~~~ 675 (952)
T KOG0735|consen 623 EAFLE---RISNGPK-LLTKELFEKSLKDFVPL---------A--------------LRGIKLVKSTGIRWEDIGGLFEA 675 (952)
T ss_pred HHHHH---HhccCcc-cchHHHHHHHHHhcChH---------H--------------hhhccccccCCCCceecccHHHH
Confidence 99832 1122334 56777776665543211 0 11111112225899999999999
Q ss_pred HHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch--------------
Q 000921 958 KDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-------------- 1023 (1223)
Q Consensus 958 k~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk-------------- 1023 (1223)
++.|++.|++|-++|.+|....+. -+.|||||||||||||+||.|+|..+++.||.|.+++++++
T Consensus 676 k~~l~~~i~~P~kyp~if~~~plr-~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~ 754 (952)
T KOG0735|consen 676 KKVLEEVIEWPSKYPQIFANCPLR-LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFE 754 (952)
T ss_pred HHHHHHHHhccccchHHHhhCCcc-cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHH
Confidence 999999999999999999998864 45899999999999999999999999999999999998766
Q ss_pred --------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHc--ccCceee
Q 000921 1024 --------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLM 1087 (1223)
Q Consensus 1024 --------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlR--RFd~~I~ 1087 (1223)
+|+|.++|+.. ......|++|+||++|||... -..|.|+|+|+||+.||||++| |||+.++
T Consensus 755 rA~~a~PCiLFFDEfdSiAPkRGhD-sTGVTDRVVNQlLTelDG~Eg--l~GV~i~aaTsRpdliDpALLRpGRlD~~v~ 831 (952)
T KOG0735|consen 755 RAQSAKPCILFFDEFDSIAPKRGHD-STGVTDRVVNQLLTELDGAEG--LDGVYILAATSRPDLIDPALLRPGRLDKLVY 831 (952)
T ss_pred HhhccCCeEEEeccccccCcccCCC-CCCchHHHHHHHHHhhccccc--cceEEEEEecCCccccCHhhcCCCccceeee
Confidence 78899988763 334567899999999999864 3789999999999999999999 9999999
Q ss_pred ecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1088 VNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1088 VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~ 1149 (1223)
.|.|++.+|.+||+.+..+..++.++|++.+|.+|+||||+||..|+-.|.+.|+++++...
T Consensus 832 C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 832 CPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRE 893 (952)
T ss_pred CCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988889999999999999999999999999999999999987654
No 12
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=5.3e-34 Score=338.84 Aligned_cols=383 Identities=21% Similarity=0.340 Sum_probs=270.9
Q ss_pred HHHHHHHhhcccCCCCEEEEEcchhhhhccChhHHHHHHHH---hccCCCCEEEEEeccCCCcccccCCCCCceeeccCc
Q 000921 690 INELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSK---LENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGS 766 (1223)
Q Consensus 690 i~~L~eVl~s~s~~~plIlyi~Dvek~l~~~~~~~~~~~~~---l~~~~~~~~ii~s~~~~~~~~~~~~~~~~~~~~~~~ 766 (1223)
+++| +.+......+|.|+.++|.+.|+ ++......|+.. +...+..+||++....
T Consensus 68 ~~al-~~i~~~~~~~~~~~vl~d~h~~~-~~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~-------------------- 125 (489)
T CHL00195 68 LQAL-EFIEKLTPETPALFLLKDFNRFL-NDISISRKLRNLSRILKTQPKTIIIIASELN-------------------- 125 (489)
T ss_pred HHHH-HHHHhcCCCCCcEEEEecchhhh-cchHHHHHHHHHHHHHHhCCCEEEEEcCCCC--------------------
Confidence 4444 34444444568999999999988 444454444443 3333445555554331
Q ss_pred chhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhhHHHHhhhC
Q 000921 767 NQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRN 846 (1223)
Q Consensus 767 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih~~kml~~~ 846 (1223)
+ | . .|.+. -..+++.||+.+.+..++.+... ....
T Consensus 126 -------~-p-~-----------------el~~~-~~~~~~~lP~~~ei~~~l~~~~~------------------~~~~ 160 (489)
T CHL00195 126 -------I-P-K-----------------ELKDL-ITVLEFPLPTESEIKKELTRLIK------------------SLNI 160 (489)
T ss_pred -------C-C-H-----------------HHHhc-eeEEeecCcCHHHHHHHHHHHHH------------------hcCC
Confidence 1 2 1 23332 25679999999988777752110 0011
Q ss_pred CCCCCCccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHHhhhhhhhhhhhhhhhcccC
Q 000921 847 GLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVT 926 (1223)
Q Consensus 847 ~L~cddL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~lq~i~~~~~~~~~al~evv~ 926 (1223)
.++..+++.++.....++..+++.++..+.. .. +. ++.+++...+..-. .. +.
T Consensus 161 ~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~~-------~~--~~~~~~~~i~~~k~-------q~-------~~ 213 (489)
T CHL00195 161 KIDSELLENLTRACQGLSLERIRRVLSKIIA----TY-------KT--IDENSIPLILEEKK-------QI-------IS 213 (489)
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----Hc-------CC--CChhhHHHHHHHHH-------HH-------Hh
Confidence 2333366677777788888888877654321 11 11 23333332222110 00 00
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000921 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1223)
Q Consensus 927 ~~e~e~~ll~~vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~ 1006 (1223)
. .+++....+.++|+||||++.+|+.|++.... .+..+...|+ .+++|||||||||||||++|++||.
T Consensus 214 ~--------~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 214 Q--------TEILEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred h--------hccccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHH
Confidence 0 12333334578999999999999999876543 2233445564 5679999999999999999999999
Q ss_pred HhCCceeEeecccccch----------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCC
Q 000921 1007 EAGANFINISMSSITSK----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1058 (1223)
Q Consensus 1007 elg~pfI~Vs~seL~sk----------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~ 1058 (1223)
+++.||+.++++.++++ ||.++..+...++....++++..|+..|+..
T Consensus 282 e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~---- 357 (489)
T CHL00195 282 DWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK---- 357 (489)
T ss_pred HhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----
Confidence 99999999998765432 6777766555455667788999999999863
Q ss_pred CccEEEEeecCCCCCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccC--CcccHHHHHHHccCCcHHHHHHHH
Q 000921 1059 KERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA--SDVDLEGIANMADGYSGSDLKNLC 1134 (1223)
Q Consensus 1059 ~~rVLVIATTNrp~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~--~dvDL~~LA~~TeGySGaDL~~L~ 1134 (1223)
+.+|+||||||+++.||++++| |||+.|+|++|+.++|.+||+.++.+.... .++|++.||..|+||||+||.++|
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv 437 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSI 437 (489)
T ss_pred CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHH
Confidence 3679999999999999999998 999999999999999999999999886433 578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccccccccccchhHhhhcC
Q 000921 1135 VTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1209 (1223)
Q Consensus 1135 ~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~~~~~p~v~WnDIGG 1209 (1223)
.+|+..|+.+ .++++.+||..|++++.|++.........+.+|-.-|.
T Consensus 438 ~eA~~~A~~~---------------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~~ 485 (489)
T CHL00195 438 IEAMYIAFYE---------------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSGR 485 (489)
T ss_pred HHHHHHHHHc---------------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcCC
Confidence 9999877652 25699999999999999998766556778899987654
No 13
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-35 Score=336.43 Aligned_cols=222 Identities=36% Similarity=0.575 Sum_probs=199.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
...+++|+|+-|+++.|++|+|+|.. |+.|..|.+.| .+-|+||||.||||||||+||||+|.|+++||+..+++++-
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 34589999999999999999999986 99999999998 46679999999999999999999999999999999998843
Q ss_pred c----------------------------hhhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCC
Q 000921 1022 S----------------------------KVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1073 (1223)
Q Consensus 1022 s----------------------------kIDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~ 1073 (1223)
. .||++.++|.....+ .++..+|+||++|||+.. ++.|+||++||.|+.
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~q--NeGiIvigATNfpe~ 451 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQ--NEGIIVIGATNFPEA 451 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCc--CCceEEEeccCChhh
Confidence 2 288889998876555 789999999999999974 579999999999999
Q ss_pred CCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1074 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1151 (1223)
Q Consensus 1074 LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk 1151 (1223)
||+||.| |||++|.||.||...|.+||+.|+.+..+..++|+..||+-|.||+|+||.||++.|+..|...
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d------- 524 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD------- 524 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc-------
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999876653
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCcccccc
Q 000921 1152 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1194 (1223)
Q Consensus 1152 ~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e 1194 (1223)
....|+|.|++.|.+++-.-.-+.
T Consensus 525 -------------------ga~~VtM~~LE~akDrIlMG~ERk 548 (752)
T KOG0734|consen 525 -------------------GAEMVTMKHLEFAKDRILMGPERK 548 (752)
T ss_pred -------------------CcccccHHHHhhhhhheeeccccc
Confidence 334699999999999875544443
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-34 Score=308.77 Aligned_cols=219 Identities=30% Similarity=0.535 Sum_probs=196.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
..|.-+++||||++.++++|.+.|.+|+.+++.|.+.|+ .||+|+|+|||||||||++|||.|.+.++.|+.+-++.++
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 456778999999999999999999999999999999994 6889999999999999999999999999999998887765
Q ss_pred ch----------------------------hhhcccccCCCCh--hHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCC
Q 000921 1022 SK----------------------------VDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 sk----------------------------IDsI~g~R~s~~e--~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp 1071 (1223)
.. +|+|..+|+.... .....+.+-+||+++||+.+. .+|-|||+|||.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRv 320 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRV 320 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeecccc
Confidence 43 7888888876431 234456777899999999864 789999999999
Q ss_pred CCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1072 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1072 ~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~ 1149 (1223)
+.||||++| |+|+.|+||.|+.+.|.+|++.+.+++++.+|+++++||+-|++|.|++++++|.+|.|.|+|+
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr----- 395 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRR----- 395 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhc-----
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCc
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1189 (1223)
Q Consensus 1150 kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~P 1189 (1223)
+...|+.+||..++.++++
T Consensus 396 ---------------------~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 396 ---------------------GATEVTHEDFMEGILEVQA 414 (424)
T ss_pred ---------------------ccccccHHHHHHHHHHHHH
Confidence 3355899999999887653
No 15
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-34 Score=346.55 Aligned_cols=238 Identities=39% Similarity=0.635 Sum_probs=205.9
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccc
Q 000921 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1223)
Q Consensus 941 ~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL 1020 (1223)
..+++|+|.|+.|++++|++|+|+|.. |++|+.|.+.| .+.|+|+||+||||||||+||||+|.|+|+||+.++++++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 345679999999999999999999986 99999999999 6778999999999999999999999999999999999997
Q ss_pred cch----------------------------hhhcccccC---CCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecC
Q 000921 1021 TSK----------------------------VDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1069 (1223)
Q Consensus 1021 ~sk----------------------------IDsI~g~R~---s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTN 1069 (1223)
+.. ||.+.++|. ..+.+......+|+||++|||+... ..|+|+|+||
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tn 458 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATN 458 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccC
Confidence 654 788888884 2233444457899999999999764 7899999999
Q ss_pred CCCCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 000921 1070 RPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1146 (1223)
Q Consensus 1070 rp~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireil 1146 (1223)
+++.||+|++| |||+.|++++|+..+|.+|++.|+++.++. +++|+..||.+|+||+|+||.++|++|+..|+|+
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~-- 536 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK-- 536 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh--
Confidence 99999999999 999999999999999999999999998885 8889999999999999999999999999999986
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCcccccccc----ccccchhHhhhc
Q 000921 1147 EKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSEST----NMNELLQWNELY 1208 (1223)
Q Consensus 1147 ek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~~----~~~p~v~WnDIG 1208 (1223)
....|+.+||.+|++++......... .....+.|.+.|
T Consensus 537 ------------------------~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eag 578 (774)
T KOG0731|consen 537 ------------------------GLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAG 578 (774)
T ss_pred ------------------------ccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhcc
Confidence 44679999999999977665432211 223456666655
No 16
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-34 Score=305.33 Aligned_cols=238 Identities=34% Similarity=0.556 Sum_probs=208.1
Q ss_pred hhhhcccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHH
Q 000921 919 KSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKT 998 (1223)
Q Consensus 919 ~al~evv~~~e~e~~ll~~vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT 998 (1223)
+++.++++.+--. -+.-.-+..+|.+++.||||++-+|+++++.+++||.+.++|.+.|+ .||+|+|||||||||||
T Consensus 127 nalvdvlppeads--si~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigi-dpprgvllygppg~gkt 203 (408)
T KOG0727|consen 127 NALVDVLPPEADS--SISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGI-DPPRGVLLYGPPGTGKT 203 (408)
T ss_pred cceeeccCCcccc--cccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCC-CCCcceEEeCCCCCcHH
Confidence 4566666654211 11222345678999999999999999999999999999999999994 67899999999999999
Q ss_pred HHHHHHHHHhCCceeEeecccccch----------------------------hhhcccccCCC--ChhHHHHHHHHHHH
Q 000921 999 MLAKAVATEAGANFINISMSSITSK----------------------------VDSMLGRRENP--GEHEAMRKMKNEFM 1048 (1223)
Q Consensus 999 ~LAkAIA~elg~pfI~Vs~seL~sk----------------------------IDsI~g~R~s~--~e~e~~~rIl~~LL 1048 (1223)
+||+|+|+...+.||+|.+++++.+ ||+|..+|.+. +......+++-+||
T Consensus 204 ml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ell 283 (408)
T KOG0727|consen 204 MLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELL 283 (408)
T ss_pred HHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHH
Confidence 9999999999999999999997655 78888888764 34456678999999
Q ss_pred HHhccCCCCCCccEEEEeecCCCCCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCc
Q 000921 1049 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 1126 (1223)
Q Consensus 1049 ~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGyS 1126 (1223)
++|||+... .+|-||++||+.+.||||++| |+|+.|+||+||..+++-++..+..++++.+++|++.+..+-+..+
T Consensus 284 nqmdgfdq~--~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis 361 (408)
T KOG0727|consen 284 NQMDGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKIS 361 (408)
T ss_pred HhccCcCcc--cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccc
Confidence 999999764 679999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhc
Q 000921 1127 GSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1187 (1223)
Q Consensus 1127 GaDL~~L~~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v 1187 (1223)
|+||.++|++|.+.|+|+ ..-.+...||++|.+.+
T Consensus 362 ~adi~aicqeagm~avr~--------------------------nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 362 GADINAICQEAGMLAVRE--------------------------NRYVVLQKDFEKAYKTV 396 (408)
T ss_pred hhhHHHHHHHHhHHHHHh--------------------------cceeeeHHHHHHHHHhh
Confidence 999999999999999996 33467889999998764
No 17
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-34 Score=328.48 Aligned_cols=252 Identities=46% Similarity=0.777 Sum_probs=224.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccc
Q 000921 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 943 e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~s 1022 (1223)
...|.|+||+|++.+++.+.+++.+|+.++++|. |+..|.+|+||+||||+|||+|++|||.|+++.|+.|++++|.+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~--glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFL--GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhh--ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 3469999999999999999999999999999997 45788899999999999999999999999999999999999876
Q ss_pred h----------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCC
Q 000921 1023 K----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1074 (1223)
Q Consensus 1023 k----------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~L 1074 (1223)
+ +|.++..| ..++++..++++.+||.++++.....+++|+||+|||+||.+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 6 78889888 667888889999999999999999888999999999999999
Q ss_pred CHHHHcccCceeeecCCCHHHHHHHHHHHHhhc-ccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1075 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1153 (1223)
Q Consensus 1075 D~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~-~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk~~ 1153 (1223)
|++++|||.++++||+|+.+.|..||+.++.+. ....+.|++.||++|+||+|+||.++|.+|++.+++++......
T Consensus 304 Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~-- 381 (428)
T KOG0740|consen 304 DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDL-- 381 (428)
T ss_pred HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhh--
Confidence 999999999999999999999999999999887 33366789999999999999999999999999999875432000
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccccccccccchhHhhhcCCCC
Q 000921 1154 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1212 (1223)
Q Consensus 1154 ~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~~~~~p~v~WnDIGGl~~ 1212 (1223)
........++++..||..|++.++|+++.+ ....+..|++.+|...
T Consensus 382 -----------~~~~~~~~r~i~~~df~~a~~~i~~~~s~~--~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 382 -----------EFIDADKIRPITYPDFKNAFKNIKPSVSLE--GLEKYEKWDKEFGSSE 427 (428)
T ss_pred -----------hhcchhccCCCCcchHHHHHHhhccccCcc--ccchhHHHhhhhcccc
Confidence 002234679999999999999999999987 4466789999999754
No 18
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=334.05 Aligned_cols=237 Identities=38% Similarity=0.584 Sum_probs=219.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch-
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK- 1023 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk- 1023 (1223)
.++ .++||+......+++++.+|+.++.+|...| .++|+|+|+|||||||||++++|+|++.++.++.+++++++.+
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 456 7999999999999999999999999999998 4677999999999999999999999999999999999987754
Q ss_pred ----------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCC
Q 000921 1024 ----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1075 (1223)
Q Consensus 1024 ----------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD 1075 (1223)
||.|+++|..... ..+++..+++++||++.. ..+++||+|||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 7888888876544 568999999999999974 37899999999999999
Q ss_pred HHHHc-ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1076 EAVVR-RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1154 (1223)
Q Consensus 1076 ~ALlR-RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk~~~ 1154 (1223)
++++| |||+.++++.|+..+|.+|++.++.++++..++++..+|..|+||+|+||.++|.+|++.++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99999 9999999999999999999999999999888899999999999999999999999999998884
Q ss_pred HHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccccccccccchhHhhhcCCCCcCcccc
Q 000921 1155 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKRKS 1218 (1223)
Q Consensus 1155 ~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~~~~~p~v~WnDIGGl~~vKKk~~ 1218 (1223)
+++||..|+..++||..++.....|+|.|+||||++.+|++-+
T Consensus 405 ---------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq 447 (693)
T KOG0730|consen 405 ---------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQ 447 (693)
T ss_pred ---------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHH
Confidence 6789999999999999999998999999999999999998743
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.9e-32 Score=317.59 Aligned_cols=220 Identities=35% Similarity=0.569 Sum_probs=194.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
..+.++|+||||++.++++|++.+.+|+.+|++|...|+ .+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 356899999999999999999999999999999999985 5679999999999999999999999999999999876643
Q ss_pred c----------------------------hhhhcccccCCC--ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCC
Q 000921 1022 S----------------------------KVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 s----------------------------kIDsI~g~R~s~--~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp 1071 (1223)
. .+|.++..|.+. +......+++.+|+..||++... .+++||+|||++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~ 294 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRA 294 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCc
Confidence 2 267777766432 22345567889999999998643 579999999999
Q ss_pred CCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1072 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1072 ~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~ 1149 (1223)
+.||++++| ||++.|+|++|+.++|..||+.++.+.++..++++..+|..|+||+|+||.++|++|++.|+++
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~----- 369 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK----- 369 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999999 9999999999999999999999999999889999999999999999999999999999999985
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCcc
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1190 (1223)
Q Consensus 1150 kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS 1190 (1223)
....|+++||.+|++++...
T Consensus 370 ---------------------~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 370 ---------------------NRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred ---------------------CCCccCHHHHHHHHHHHHhc
Confidence 23579999999999987543
No 20
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-32 Score=293.78 Aligned_cols=217 Identities=34% Similarity=0.568 Sum_probs=195.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch
Q 000921 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1223)
Q Consensus 944 ~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk 1023 (1223)
|..+++-|||++.++++|++.|++|.++|++|...|+..| +|+|||||||||||+||+|+|+...+.||+|++++++.+
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 3678899999999999999999999999999999997654 999999999999999999999999999999999997655
Q ss_pred ----------------------------hhhcccccCCC--ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCC
Q 000921 1024 ----------------------------VDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1073 (1223)
Q Consensus 1024 ----------------------------IDsI~g~R~s~--~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~ 1073 (1223)
||+|...|... +.....++.+-+||+++||+... .++-||++|||.+.
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridi 298 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDI 298 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEecccccc
Confidence 88888776542 33344566777999999999765 67999999999999
Q ss_pred CCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1074 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1151 (1223)
Q Consensus 1074 LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk 1151 (1223)
||+|++| |.|+.|+||+|+.+.|.+||+.+.+++++...+++..+|+...|.+|++++.+|.+|.|.|+|+
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alre------- 371 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRE------- 371 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHH-------
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCc
Q 000921 1152 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1189 (1223)
Q Consensus 1152 ~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~P 1189 (1223)
-.-.+|.|||+-|..++..
T Consensus 372 -------------------rrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 372 -------------------RRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred -------------------hhccccHHHHHHHHHHHHh
Confidence 1235899999999987643
No 21
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-33 Score=304.29 Aligned_cols=218 Identities=37% Similarity=0.592 Sum_probs=195.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccc
Q 000921 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 943 e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~s 1022 (1223)
.|.-+|.||||++.++++|++.+++||.+|++|...| .+||+||+|||+||||||+||+|+|++..+.|+++-+++++.
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemG-ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcC-CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 3467899999999999999999999999999999999 578899999999999999999999999999999999998765
Q ss_pred h----------------------------hhhcccccCCC--ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCC
Q 000921 1023 K----------------------------VDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1072 (1223)
Q Consensus 1023 k----------------------------IDsI~g~R~s~--~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~ 1072 (1223)
+ ||++..+|.+. +.....++.+-+||+++||+... +.|-||+|||+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnrie 335 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRIE 335 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEeccccc
Confidence 5 78888887653 22234455666999999999864 6799999999999
Q ss_pred CCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1073 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1150 (1223)
Q Consensus 1073 ~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~k 1150 (1223)
.|||||+| |.|+.|+||.||...+.+||..+..++.+..+++++.+...-+.++|+||+++|.+|.+.|+|+.
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer----- 410 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER----- 410 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-----
Confidence 99999999 99999999999999999999999999999999999999999899999999999999999999962
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCc
Q 000921 1151 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1189 (1223)
Q Consensus 1151 k~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~P 1189 (1223)
...++++||.+|.+.+--
T Consensus 411 ---------------------Rm~vt~~DF~ka~e~V~~ 428 (440)
T KOG0726|consen 411 ---------------------RMKVTMEDFKKAKEKVLY 428 (440)
T ss_pred ---------------------HhhccHHHHHHHHHHHHH
Confidence 235899999999987643
No 22
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.1e-32 Score=311.91 Aligned_cols=257 Identities=20% Similarity=0.266 Sum_probs=201.2
Q ss_pred hCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhhHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhh
Q 000921 800 LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSH 878 (1223)
Q Consensus 800 rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~ 878 (1223)
|||+||||+||||+||+||++ |||++|++++.|+.| ||.+||.+|||||||||+|||++|.||
T Consensus 391 RlEVqmEIsLPDE~gRlQIl~----------------IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~ 454 (744)
T KOG0741|consen 391 RLEVQMEISLPDEKGRLQILK----------------IHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSF 454 (744)
T ss_pred ceEEEEEEeCCCccCceEEEE----------------hhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 799999999999999999999 999999999999999 999999999999999999999999999
Q ss_pred hhhccCCCC-------CCCCceeecchhHHHHHHHHhhhhhhhhhhhhhhhcccChhHHHHHHhcCCCCCCCCCCCcccc
Q 000921 879 HFMHCSEAP-------GKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDI 951 (1223)
Q Consensus 879 al~~~~~~~-------~~~~kl~Is~esl~~~l~~lq~i~~~~~~~~~al~evv~~~e~e~~ll~~vI~~~e~~vtfdDI 951 (1223)
++.++.... ....++.|+++||.++++.++. .|. ..+++++..+..++|.++.+
T Consensus 455 A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP------AFG------~see~l~~~~~~Gmi~~g~~------- 515 (744)
T KOG0741|consen 455 AMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP------AFG------ISEEDLERFVMNGMINWGPP------- 515 (744)
T ss_pred HHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc------ccC------CCHHHHHHHHhCCceeeccc-------
Confidence 999875544 1234577888888888776643 333 45788999999999998765
Q ss_pred cCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecc-cccch-------
Q 000921 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS-SITSK------- 1023 (1223)
Q Consensus 952 gGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~s-eL~sk------- 1023 (1223)
...+.+.-+.++.+ ++.++ ..+..++||+||||+|||+||..||..+++||++|-.+ ++++.
T Consensus 516 --v~~il~~G~llv~q-vk~s~-------~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~ 585 (744)
T KOG0741|consen 516 --VTRILDDGKLLVQQ-VKNSE-------RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCA 585 (744)
T ss_pred --HHHHHhhHHHHHHH-hhccc-------cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHH
Confidence 45555555555554 34443 34568999999999999999999999999999987554 44332
Q ss_pred ------------------hhhcccccCCCC-hhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCH-HHHcccC
Q 000921 1024 ------------------VDSMLGRRENPG-EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLP 1083 (1223)
Q Consensus 1024 ------------------IDsI~g~R~s~~-e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~-ALlRRFd 1083 (1223)
+|.|.+--.... ...+.+.+++.|++.++..++++ ++++|++||++.+.|.+ .++.+|+
T Consensus 586 ~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg-~kLli~~TTS~~~vL~~m~i~~~F~ 664 (744)
T KOG0741|consen 586 HIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKG-RKLLIFGTTSRREVLQEMGILDCFS 664 (744)
T ss_pred HHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCC-ceEEEEecccHHHHHHHcCHHHhhh
Confidence 454422211111 12234789999999999998864 89999999999888876 6667999
Q ss_pred ceeeecCCCH-HHHHHHHHH
Q 000921 1084 RRLMVNLPDA-PNREKIIRV 1102 (1223)
Q Consensus 1084 ~~I~VplPd~-eeR~~ILr~ 1102 (1223)
..|+||..+. ++-.+++..
T Consensus 665 ~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 665 STIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred heeecCccCchHHHHHHHHH
Confidence 9999987654 555555554
No 23
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.2e-32 Score=291.75 Aligned_cols=221 Identities=33% Similarity=0.556 Sum_probs=199.5
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
.++.+++.|+||..++++.|++.+++|+.+|+.|.+.|+ .||+|||||||||||||++|+|+|+..++-||.|-+++|+
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgi-dppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGI-DPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCC-CCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 356899999999999999999999999999999999995 6789999999999999999999999999999999999977
Q ss_pred ch----------------------------hhhcccccCCCC--hhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCC
Q 000921 1022 SK----------------------------VDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 sk----------------------------IDsI~g~R~s~~--e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp 1071 (1223)
.+ ||++.|.|...+ .....++.+-+|+++|||+.+. .++-|+++||+|
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrp 326 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRP 326 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCC
Confidence 65 899999998763 3345566777899999999875 679999999999
Q ss_pred CCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1072 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1072 ~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~ 1149 (1223)
+.|||||+| |+|+.++|.+||.+.|..||+.+.+.+.+..++-++.||++|..-||++|+.+|.+|.|.|++.-
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar---- 402 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR---- 402 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999851
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccc
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1191 (1223)
Q Consensus 1150 kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~ 1191 (1223)
....|-.||..|+.++...+
T Consensus 403 ----------------------rk~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 403 ----------------------RKVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred ----------------------hhhhhHHHHHHHHHHHHHHH
Confidence 13467789999999876554
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=3.7e-31 Score=308.08 Aligned_cols=224 Identities=40% Similarity=0.659 Sum_probs=196.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
..+.++|+||||+++++++|++++.+|+.+++.|...|+ .+++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 345799999999999999999999999999999999885 5669999999999999999999999999999999887754
Q ss_pred c----------------------------hhhhcccccCCCCh--hHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCC
Q 000921 1022 S----------------------------KVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 s----------------------------kIDsI~g~R~s~~e--~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp 1071 (1223)
. .||.|++.+.+.+. .....+.+.+|+.+++++... .+++||+|||++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn~~ 280 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR--GNVKIIAATNRI 280 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC--CCEEEEEecCCh
Confidence 3 17777776654321 234566777899999987643 579999999999
Q ss_pred CCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1072 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1072 ~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~ 1149 (1223)
+.+|++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..||..|+||+|+||+++|++|++.|+++
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~----- 355 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD----- 355 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999999988888899999999999999999999999999999885
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCcccccc
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1194 (1223)
Q Consensus 1150 kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e 1194 (1223)
....|+++||.+|+++++++...+
T Consensus 356 ---------------------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 356 ---------------------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ---------------------CCCCcCHHHHHHHHHHHhcccccc
Confidence 234699999999999999987665
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=5.2e-31 Score=283.30 Aligned_cols=215 Identities=31% Similarity=0.461 Sum_probs=185.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch-
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK- 1023 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk- 1023 (1223)
+++|+|++|.++.|+..+-++. .|.+|+.|.++. |++||||||||||||++|+|+|++++.||+.|.+.+|+++
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 6899999999999999876554 599999998763 6999999999999999999999999999999999988765
Q ss_pred ---------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCH
Q 000921 1024 ---------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1076 (1223)
Q Consensus 1024 ---------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ 1076 (1223)
+|+|.-.|.-..-......++|.||++|||+. .+..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 56665444432222345679999999999997 5689999999999999999
Q ss_pred HHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1077 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKN-LCVTAAHCPIREILEKEKKERAL 1155 (1223)
Q Consensus 1077 ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~-L~~~Aa~~aireilek~kk~~~~ 1155 (1223)
++++||...|+|.+|+.++|..|++.+..++++.-+.+++.++..|.|+||+||.. ++..|.++|+.+
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e----------- 338 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE----------- 338 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh-----------
Confidence 99999999999999999999999999999999999999999999999999999975 566777777775
Q ss_pred HHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCcccc
Q 000921 1156 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1192 (1223)
Q Consensus 1156 ~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s 1192 (1223)
+...|+.+||..|+++-++...
T Consensus 339 ---------------d~e~v~~edie~al~k~r~~r~ 360 (368)
T COG1223 339 ---------------DREKVEREDIEKALKKERKRRA 360 (368)
T ss_pred ---------------chhhhhHHHHHHHHHhhccccC
Confidence 3345888999999998666543
No 26
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.4e-31 Score=313.63 Aligned_cols=236 Identities=39% Similarity=0.581 Sum_probs=206.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccc
Q 000921 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 943 e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~s 1022 (1223)
.+.++|.|+.|.+++|+++.|+|.. |+.|..|...|. +-|+|+||+||||||||+||+|+|.+++.||+.+++++++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4579999999999999999999986 999999999985 77899999999999999999999999999999999999664
Q ss_pred h----------------------------hhhcccccCC--CChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCC
Q 000921 1023 K----------------------------VDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1072 (1223)
Q Consensus 1023 k----------------------------IDsI~g~R~s--~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~ 1072 (1223)
. ||++...|+. ++.+......+|++|++|||+. .+..|+||++||||+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--~~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--GNEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--CCCceEEEecCCCcc
Confidence 3 7777777743 2344555679999999999997 458899999999999
Q ss_pred CCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1073 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1150 (1223)
Q Consensus 1073 ~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~k 1150 (1223)
.||+||+| |||+.|.|+.||...|++|++.+.++.++..++|+..+|+.|.||+|+||.+++++|+..++|+
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~------ 373 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR------ 373 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCcccccccc----ccccchhHhhhc
Q 000921 1151 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSEST----NMNELLQWNELY 1208 (1223)
Q Consensus 1151 k~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~~----~~~p~v~WnDIG 1208 (1223)
....++|.||.+|++++..-..+... .....+.|.+-|
T Consensus 374 --------------------n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEag 415 (596)
T COG0465 374 --------------------NKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAG 415 (596)
T ss_pred --------------------cCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHH
Confidence 44679999999999998655544433 234556776654
No 27
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=2.9e-30 Score=303.17 Aligned_cols=219 Identities=37% Similarity=0.585 Sum_probs=191.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccc
Q 000921 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 943 e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~s 1022 (1223)
.+.++|+||||++.++++|++++.+|+.+|++|...|+ .+++|+|||||||||||++|++||.+++.+|+.+.++++.+
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi-~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGI-KPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45789999999999999999999999999999999985 56799999999999999999999999999999998877643
Q ss_pred h----------------------------hhhcccccCCC--ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCC
Q 000921 1023 K----------------------------VDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1072 (1223)
Q Consensus 1023 k----------------------------IDsI~g~R~s~--~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~ 1072 (1223)
+ ||.++..|... +......+.+.+||..||++... .++.||+|||+++
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d 333 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRIE 333 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCChH
Confidence 2 66777666432 22233456777899999998643 5799999999999
Q ss_pred CCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1073 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1150 (1223)
Q Consensus 1073 ~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~k 1150 (1223)
.||++++| ||++.|+|+.|+.++|.+||+.++.++.+..+++++.++..|+||+|+||+++|++|++.|+++
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~------ 407 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRE------ 407 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999999998889999999999999999999999999999999885
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCcc
Q 000921 1151 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1190 (1223)
Q Consensus 1151 k~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS 1190 (1223)
....|+++||..|++++...
T Consensus 408 --------------------~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 408 --------------------RRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred --------------------cCCccCHHHHHHHHHHHHhh
Confidence 23569999999999997543
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.3e-29 Score=303.44 Aligned_cols=240 Identities=39% Similarity=0.576 Sum_probs=198.1
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccc
Q 000921 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1223)
Q Consensus 941 ~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL 1020 (1223)
...+.++|+||+|+++++++|++++.. +++++.|...| ..+++|+|||||||||||++|++||.+++.||+.++++++
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 345689999999999999999998886 89999999887 4567999999999999999999999999999999987654
Q ss_pred cc----------------------------hhhhcccccCCC--ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCC
Q 000921 1021 TS----------------------------KVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1070 (1223)
Q Consensus 1021 ~s----------------------------kIDsI~g~R~s~--~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNr 1070 (1223)
.+ .||.|+..+... +.+....+++++||.+||++.. +.+++||+|||+
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~ 202 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATNR 202 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecCC
Confidence 32 267777666542 2234456789999999999864 367999999999
Q ss_pred CCCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1071 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1148 (1223)
Q Consensus 1071 p~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek 1148 (1223)
++.||++++| ||++.|+|++|+.++|.+||+.++....+..++++..+|..|.||+|+||.++|++|+..++++
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~---- 278 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK---- 278 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----
Confidence 9999999999 9999999999999999999999999887778899999999999999999999999998877663
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccccccccccchhHhhhcCC
Q 000921 1149 EKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1210 (1223)
Q Consensus 1149 ~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~~~~~p~v~WnDIGGl 1210 (1223)
....|+.+||..|++++..........+.+..+|...+.+
T Consensus 279 ----------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hE 318 (495)
T TIGR01241 279 ----------------------NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHE 318 (495)
T ss_pred ----------------------CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 2357999999999998765443333334444455544443
No 29
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=1.5e-29 Score=315.49 Aligned_cols=262 Identities=37% Similarity=0.590 Sum_probs=219.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch
Q 000921 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1223)
Q Consensus 944 ~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk 1023 (1223)
+.++|+||||++++++.|++++.+|+.+|++|...|+ .+++++|||||||||||+||++||++++.+|+.++++++..+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4689999999999999999999999999999999885 567999999999999999999999999999999988764332
Q ss_pred ----------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCC
Q 000921 1024 ----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1075 (1223)
Q Consensus 1024 ----------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD 1075 (1223)
||.+++.+... ..+..++++++|+..|+++.. ..+++||+|||+++.||
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 56666665442 223346788999999999854 36799999999999999
Q ss_pred HHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1076 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1153 (1223)
Q Consensus 1076 ~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk~~ 1153 (1223)
++++| ||++.+++++|+.++|.+||+.++....+..+++++.+|..|+||+|+||..+|+.|++.++++.+.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 9999999999999999999999998888888899999999999999999999999999999988654211000
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccccccccccchhHhhhcCCCCcCcc
Q 000921 1154 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKR 1216 (1223)
Q Consensus 1154 ~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~~~~~p~v~WnDIGGl~~vKKk 1216 (1223)
. .. ...........++++||..|++.++|+..++.....|.+.|+||||++.+|+.
T Consensus 409 --~-~~----~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~ 464 (733)
T TIGR01243 409 --E-AE----EIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQE 464 (733)
T ss_pred --c-cc----cccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHH
Confidence 0 00 00001123346899999999999999999888778899999999999988863
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=1.7e-28 Score=283.21 Aligned_cols=217 Identities=43% Similarity=0.687 Sum_probs=187.5
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
..+.++|+||+|++++++.|++++..|+.+++.|...|+ .+++|+|||||||||||++|+++|.+++.+|+.+.+.++.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 346789999999999999999999999999999999885 5679999999999999999999999999999998876543
Q ss_pred c----------------------------hhhhcccccCCCC--hhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCC
Q 000921 1022 S----------------------------KVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 s----------------------------kIDsI~g~R~s~~--e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp 1071 (1223)
. .+|.++..+.... ......+.+.+++..++++... .++.||+|||++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn~~ 271 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR--GNVKVIAATNRP 271 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecCCh
Confidence 2 1566665554321 1233456777888889887533 579999999999
Q ss_pred CCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1072 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1072 ~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~ 1149 (1223)
+.+|++++| ||++.|+|+.|+.++|.+||+.++.+..+..++++..||+.|+||+|+||.++|++|++.|+++
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~----- 346 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE----- 346 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 9999999999999999999999998888888899999999999999999999999999999885
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhc
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1187 (1223)
Q Consensus 1150 kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v 1187 (1223)
....|+.+||..|++++
T Consensus 347 ---------------------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 347 ---------------------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred ---------------------CCCccCHHHHHHHHHHh
Confidence 23569999999999875
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.95 E-value=3.3e-27 Score=281.17 Aligned_cols=244 Identities=28% Similarity=0.459 Sum_probs=183.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------- 1011 (1223)
Q Consensus 942 ~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p---------- 1011 (1223)
..+.++|+||||++.++++|++.|.+|+.++++|...|+ .|++|+|||||||||||++|+++|++++.+
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 445799999999999999999999999999999999885 567999999999999999999999998654
Q ss_pred eeEeeccccc--------------------------------chhhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCC
Q 000921 1012 FINISMSSIT--------------------------------SKVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1059 (1223)
Q Consensus 1012 fI~Vs~seL~--------------------------------skIDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~ 1059 (1223)
|+.+..+++. +.+|.+++.|.....++..++++++||.+||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~-- 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL-- 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--
Confidence 5555544432 237778877765444555578999999999998643
Q ss_pred ccEEEEeecCCCCCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhc-ccC---------CcccHHHHHHH------
Q 000921 1060 ERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE-ELA---------SDVDLEGIANM------ 1121 (1223)
Q Consensus 1060 ~rVLVIATTNrp~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~-~l~---------~dvDL~~LA~~------ 1121 (1223)
.+++||+|||+++.||+|++| |||+.|+|++|+.++|.+||+.++... ++. ...++..+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 579999999999999999999 999999999999999999999998652 221 01112222221
Q ss_pred -----------------------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHH
Q 000921 1122 -----------------------ADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMD 1178 (1223)
Q Consensus 1122 -----------------------TeGySGaDL~~L~~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~e 1178 (1223)
++.+||++|.++|.+|...|+++.+. .....|+++
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~----------------------~~~~~~~~~ 469 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT----------------------GGQVGLRIE 469 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh----------------------cCCcCcCHH
Confidence 34466666666666666666665431 123579999
Q ss_pred HHHHHHHhc-CccccccccccccchhHhhhcCCCC
Q 000921 1179 DFKYAHEQV-CASVSSESTNMNELLQWNELYGEGG 1212 (1223)
Q Consensus 1179 DF~~ALe~v-~PS~s~e~~~~~p~v~WnDIGGl~~ 1212 (1223)
|+..|+..- ..+- +..+...-.+|..|-|..+
T Consensus 470 ~l~~a~~~e~~~~~--~~~~~~~~~~w~~~~~~~~ 502 (512)
T TIGR03689 470 HLLAAVLDEFRESE--DLPNTTNPDDWARISGKKG 502 (512)
T ss_pred HHHHHHHHhhcccc--cCCCCCCHHHHhhhhCCCC
Confidence 999998753 3321 2122223367999988765
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=99.95 E-value=1.8e-27 Score=290.81 Aligned_cols=215 Identities=39% Similarity=0.596 Sum_probs=185.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccc
Q 000921 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 943 e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~s 1022 (1223)
+..++|+||+|++++++++.+++.. ++.++.|...|. .+++|+|||||||||||++|+++|.+++.||+.++++++..
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 4578999999999999999998876 889999988884 56799999999999999999999999999999998876432
Q ss_pred ----------------------------hhhhcccccCC--CChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCC
Q 000921 1023 ----------------------------KVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1072 (1223)
Q Consensus 1023 ----------------------------kIDsI~g~R~s--~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~ 1072 (1223)
.||.+...|.. .+.+.....++++||.+||++.. +.+|+||+|||+++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~ 332 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVD 332 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchH
Confidence 26666665543 22344456788999999999864 46899999999999
Q ss_pred CCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1073 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1150 (1223)
Q Consensus 1073 ~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~k 1150 (1223)
.||++++| ||++.|.|++|+.++|.+||+.++.+..+..++++..+|+.|.||+|+||.++|++|+..++++
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~------ 406 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR------ 406 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999999 9999999999999999999999999877788999999999999999999999999999887764
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhc
Q 000921 1151 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1187 (1223)
Q Consensus 1151 k~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v 1187 (1223)
....|+++||..|++++
T Consensus 407 --------------------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 407 --------------------KKATITMKEIDTAIDRV 423 (638)
T ss_pred --------------------CCCCcCHHHHHHHHHHH
Confidence 23568999999999876
No 33
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-28 Score=269.65 Aligned_cols=214 Identities=36% Similarity=0.644 Sum_probs=191.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch-
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK- 1023 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk- 1023 (1223)
+++|+++||+..+..++++.|.+|+.+|++|.+.| .+||+++|||||||||||++|++||..+|++|+.+.++.|.++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvg-Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVG-IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccC-CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 68999999999999999999999999999999988 5788999999999999999999999999999999999998765
Q ss_pred ---------------------------hhhcccccCCCCh--hHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCC
Q 000921 1024 ---------------------------VDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1074 (1223)
Q Consensus 1024 ---------------------------IDsI~g~R~s~~e--~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~L 1074 (1223)
||++.|+|.+.+. ....++.+-+|+++||++.. ..+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcccc
Confidence 8999999876542 33556777788999999864 4889999999999999
Q ss_pred CHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1075 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1152 (1223)
Q Consensus 1075 D~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk~ 1152 (1223)
|++|+| |.++.+++|+|+...|..|++.+........++|.+++.+..+||.|+|+++.|++|.+.++++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~------- 357 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE------- 357 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh-------
Confidence 999999 99999999999999999999999988888889999999999999999999999999999888751
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhc
Q 000921 1153 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1187 (1223)
Q Consensus 1153 ~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v 1187 (1223)
..-+-+|||..++.++
T Consensus 358 -------------------~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 358 -------------------RDEVLHEDFMKLVRKQ 373 (388)
T ss_pred -------------------hHHHhHHHHHHHHHHH
Confidence 1225578888887764
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=2.5e-26 Score=282.52 Aligned_cols=222 Identities=38% Similarity=0.583 Sum_probs=190.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
..+..+|+|++|++..++.|.+++.. +..+..|...+. ..++||||+||||||||++|+++|.+++.||+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 44567899999999999999999887 677787876663 4558999999999999999999999999999999986543
Q ss_pred c----------------------------hhhhcccccCC--CChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCC
Q 000921 1022 S----------------------------KVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 s----------------------------kIDsI~g~R~s--~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp 1071 (1223)
. .||.++..|.. .+.+....+++++||.+||++.. +.+++||+|||+|
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 2 26777776654 23344556799999999999864 4689999999999
Q ss_pred CCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1072 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1072 ~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~ 1149 (1223)
+.||++++| |||+.|+|++|+.++|.+||+.++.+.++..++|+..+|+.|.||||+||.++|++|+..|+++
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~----- 375 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----- 375 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999999 9999999999999999999999999988888999999999999999999999999999988774
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccc
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1193 (1223)
Q Consensus 1150 kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~ 1193 (1223)
....|+++||..|++++.+....
T Consensus 376 ---------------------~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 376 ---------------------NKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred ---------------------CCCcccHHHHHHHHHHHhccccc
Confidence 33579999999999988765543
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.1e-27 Score=270.23 Aligned_cols=236 Identities=26% Similarity=0.426 Sum_probs=194.4
Q ss_pred CCCcc--cccCcHHHHHHH-HHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-eeEeecccc
Q 000921 945 GVTFD--DIGALENVKDTL-KELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSI 1020 (1223)
Q Consensus 945 ~vtfd--DIgGle~vk~~L-~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p-fI~Vs~seL 1020 (1223)
+..|+ .|||++.-...| ++.....+.-|+...+.|. +..+|||||||||||||++||.|.+-+++. =-.|+++++
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi-~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGI-KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCc-cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 34555 589999665554 6777777888999999984 567999999999999999999999988653 345666666
Q ss_pred cch------------------------------------hhhcccccCCCCh-hHHHHHHHHHHHHHhccCCCCCCccEE
Q 000921 1021 TSK------------------------------------VDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVL 1063 (1223)
Q Consensus 1021 ~sk------------------------------------IDsI~g~R~s~~e-~e~~~rIl~~LL~~LDgl~~k~~~rVL 1063 (1223)
+++ ||+|+.+|++.+. ......++|+||.-|||...- .+++
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEE
Confidence 554 8999999987543 456678999999999998754 6799
Q ss_pred EEeecCCCCCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhc----ccCCcccHHHHHHHccCCcHHHHHHHHHHH
Q 000921 1064 VLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTA 1137 (1223)
Q Consensus 1064 VIATTNrp~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~----~l~~dvDL~~LA~~TeGySGaDL~~L~~~A 1137 (1223)
||+.|||.+.||+||+| ||...+++.+||+..|.+||+.+++++ .+..++|+++||.+|..|||++|..|++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999886 356899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCcccccc
Q 000921 1138 AHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1194 (1223)
Q Consensus 1138 a~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e 1194 (1223)
.-.|+.|.+...-+ ........+...|+++||.+||++++|++-..
T Consensus 452 ~S~A~nR~vk~~~~-----------~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~s 497 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGK-----------VEVDPVAIENLKVTRGDFLNALEDVKPAFGIS 497 (744)
T ss_pred HHHHHHhhhccCcc-----------eecCchhhhheeecHHHHHHHHHhcCcccCCC
Confidence 99999886643311 01112233456799999999999999999754
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.6e-26 Score=284.56 Aligned_cols=232 Identities=37% Similarity=0.561 Sum_probs=192.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceeEeec
Q 000921 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISM 1017 (1223)
Q Consensus 943 e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el-----g~pfI~Vs~ 1017 (1223)
+..++|++|||++.+++.|+|+|..||.||+.|...++ .||+|+|||||||||||+.|+|+|..+ ...|+.-.+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i-tpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI-TPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc-CCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 44789999999999999999999999999999999985 577999999999999999999999988 355666566
Q ss_pred ccccch----------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecC
Q 000921 1018 SSITSK----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1069 (1223)
Q Consensus 1018 seL~sk----------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTN 1069 (1223)
++..++ ||-+.+.|....+. ....++..||..|||+... .+|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEq-ih~SIvSTLLaLmdGldsR--gqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQ-IHASIVSTLLALMDGLDSR--GQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHH-hhhhHHHHHHHhccCCCCC--CceEEEcccC
Confidence 554443 67777777654332 2356899999999999865 7899999999
Q ss_pred CCCCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 000921 1070 RPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1146 (1223)
Q Consensus 1070 rp~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l-~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireil 1146 (1223)
||+.+|+|++| ||+++++|++|+.+.|.+|+..+..+... ....-+..||+.|.||.|+||+.||.+|++.++++-
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~- 493 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS- 493 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc-
Confidence 99999999999 99999999999999999999999887542 234457899999999999999999999999998852
Q ss_pred HHHHHHHHHHHhhccCCCCCCCC-------CCCCCCCHHHHHHHHHhcCccccccc
Q 000921 1147 EKEKKERALALAENRASPPLYSS-------VDVRPLKMDDFKYAHEQVCASVSSES 1195 (1223)
Q Consensus 1147 ek~kk~~~~~~~e~~~~~~~~~~-------~~~rpLT~eDF~~ALe~v~PS~s~e~ 1195 (1223)
++..+.. .....|...||..|+.+..|+..+..
T Consensus 494 ----------------~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~ 533 (1080)
T KOG0732|consen 494 ----------------FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSS 533 (1080)
T ss_pred ----------------cCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccc
Confidence 1222221 12334899999999999999988753
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.92 E-value=6.5e-25 Score=280.83 Aligned_cols=164 Identities=20% Similarity=0.259 Sum_probs=132.6
Q ss_pred HhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch-----------------------------
Q 000921 973 ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----------------------------- 1023 (1223)
Q Consensus 973 elf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk----------------------------- 1023 (1223)
..+.+.| ..||+||||+||||||||+||+|||.++++||+.|++++++++
T Consensus 1620 P~slrLG-l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1620 PFSLRLA-LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred CHHHHcC-CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3344556 4678999999999999999999999999999999999887632
Q ss_pred ------------------------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCC-CCCc
Q 000921 1024 ------------------------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKE 1060 (1223)
Q Consensus 1024 ------------------------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~-k~~~ 1060 (1223)
||+|... +.....+++|+++||+... ...+
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~-------ds~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN-------ESNYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC-------ccceehHHHHHHHhccccccCCCC
Confidence 1222111 0001237889999998642 2346
Q ss_pred cEEEEeecCCCCCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHh--hcccCC-cccHHHHHHHccCCcHHHHHHHHH
Q 000921 1061 RVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILA--KEELAS-DVDLEGIANMADGYSGSDLKNLCV 1135 (1223)
Q Consensus 1061 rVLVIATTNrp~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~--k~~l~~-dvDL~~LA~~TeGySGaDL~~L~~ 1135 (1223)
+|+||||||+|+.||||++| |||+.|+|+.|+..+|.+++..++. ...+.. .+|++.+|+.|.||+||||.+||+
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 89999999999999999999 9999999999999999999987643 334443 368999999999999999999999
Q ss_pred HHHHHHHHH
Q 000921 1136 TAAHCPIRE 1144 (1223)
Q Consensus 1136 ~Aa~~aire 1144 (1223)
+|+..|+++
T Consensus 1852 EAaliAirq 1860 (2281)
T CHL00206 1852 EALSISITQ 1860 (2281)
T ss_pred HHHHHHHHc
Confidence 999999986
No 38
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.87 E-value=1.3e-21 Score=222.61 Aligned_cols=192 Identities=17% Similarity=0.221 Sum_probs=144.6
Q ss_pred Ccccc-cCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch--
Q 000921 947 TFDDI-GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-- 1023 (1223)
Q Consensus 947 tfdDI-gGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk-- 1023 (1223)
+|+++ ||+--...-+..++....++- ....+ .++|+++|||||||||||++|++||+++|++|+.+++++|.++
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~-ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPN-IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHHhhh--hhccC-CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 45555 555555555544443322211 11234 4678999999999999999999999999999999999987754
Q ss_pred -------------------------------hhhcccccCCCChhHHHHHHH-HHHHHHhccCC----------CCCCcc
Q 000921 1024 -------------------------------VDSMLGRRENPGEHEAMRKMK-NEFMVNWDGLR----------TKDKER 1061 (1223)
Q Consensus 1024 -------------------------------IDsI~g~R~s~~e~e~~~rIl-~~LL~~LDgl~----------~k~~~r 1061 (1223)
||++++.|... .....++++ .+||++||++. .....+
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~ 268 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPR 268 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCC
Confidence 68888888643 333334454 79999998742 123578
Q ss_pred EEEEeecCCCCCCCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccC----CcHHHHHHHHH
Q 000921 1062 VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKNLCV 1135 (1223)
Q Consensus 1062 VLVIATTNrp~~LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeG----ySGaDL~~L~~ 1135 (1223)
|+||+|||+|+.||++|+| |||+.+ .+|+.++|.+||+.++++.++. .+|+..|+..+.| |.|+--..+..
T Consensus 269 V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd 345 (413)
T PLN00020 269 VPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYD 345 (413)
T ss_pred ceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHH
Confidence 9999999999999999999 999965 5899999999999999998765 6889999999887 67776666666
Q ss_pred HHHHHHHHHH
Q 000921 1136 TAAHCPIREI 1145 (1223)
Q Consensus 1136 ~Aa~~airei 1145 (1223)
++...-+.++
T Consensus 346 ~~v~~~i~~~ 355 (413)
T PLN00020 346 DEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHh
Confidence 6666555543
No 39
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.3e-22 Score=237.08 Aligned_cols=222 Identities=22% Similarity=0.310 Sum_probs=172.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch----------------------------hhhcccccCCCCh
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----------------------------VDSMLGRRENPGE 1036 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk----------------------------IDsI~g~R~s~~e 1036 (1223)
..+||||+||||||++++++|.++|.+++.++|.++... +|.+...+.. ++
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 579999999999999999999999999999999987754 5555533332 33
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHH
Q 000921 1037 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 1116 (1223)
Q Consensus 1037 ~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~ 1116 (1223)
.-.....++.++. +|-... ...+++||+||+..+.|++.+++.|-++|.++.|+.++|.+||+.++....+..++.+.
T Consensus 511 d~rl~~~i~~~ls-~e~~~~-~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NEDFKF-SCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-cccccC-CCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 3333444444444 333322 34789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccccc
Q 000921 1117 GIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA-LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1195 (1223)
Q Consensus 1117 ~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk~~~-~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~ 1195 (1223)
.+|.+|.||+.+||..++..+...+..++.++. .... ...+++.+ -.....++++||.+|+.+++..++...
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~-l~g~~~~~~~~~~------~~~~~~l~~edf~kals~~~~~fs~ai 661 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKG-LAGGLQEEDEGEL------CAAGFLLTEEDFDKALSRLQKEFSDAI 661 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhc-ccccchhcccccc------ccccceecHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999888544444433222 0000 01111111 123468999999999999999999664
Q ss_pred -cccccchhHhhhcCCCCcCcc
Q 000921 1196 -TNMNELLQWNELYGEGGSRKR 1216 (1223)
Q Consensus 1196 -~~~~p~v~WnDIGGl~~vKKk 1216 (1223)
.+.+|+|.|+||||++.+|+.
T Consensus 662 GAPKIPnV~WdDVGGLeevK~e 683 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTE 683 (953)
T ss_pred CCCCCCccchhcccCHHHHHHH
Confidence 568999999999999999864
No 40
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.4e-18 Score=203.25 Aligned_cols=233 Identities=20% Similarity=0.263 Sum_probs=179.6
Q ss_pred ccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----CceeEeecccccch-
Q 000921 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSSITSK- 1023 (1223)
Q Consensus 949 dDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg----~pfI~Vs~seL~sk- 1023 (1223)
.|++-+..++++..+....| . .. ...|||+||+|||||.||++++.++. +++..++|+.+...
T Consensus 408 ~d~i~~~s~kke~~n~~~sp----------v-~~-~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~ 475 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP----------V-FR-HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS 475 (952)
T ss_pred Cceeecchhhhhhhhhhccc----------c-cc-cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh
Confidence 36666777777765543333 1 11 25899999999999999999999984 56778899886543
Q ss_pred ---------------------------hhhcccccCC-CChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCC
Q 000921 1024 ---------------------------VDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1075 (1223)
Q Consensus 1024 ---------------------------IDsI~g~R~s-~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD 1075 (1223)
+|.|++...+ ++........+..|++++-....+.+..+.||||.+..+.|+
T Consensus 476 ~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 476 LEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 7777773322 233334445566677665555556678899999999999999
Q ss_pred HHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1076 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1152 (1223)
Q Consensus 1076 ~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk~ 1152 (1223)
+.|.+ +|+..+.+|.|+..+|.+||+.++.+.... ..-|++-++..|+||...||..++.+|.+.|+.+.+.
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris----- 630 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS----- 630 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc-----
Confidence 99988 999999999999999999999999886522 2334555999999999999999999999988843211
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccccccccccc-hhHhhhcCCCCcCc
Q 000921 1153 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNEL-LQWNELYGEGGSRK 1215 (1223)
Q Consensus 1153 ~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~~~~~p~-v~WnDIGGl~~vKK 1215 (1223)
. ....+|.+||.++++.+.|..+++....++. ..|.||||+.++|+
T Consensus 631 ----------------~-~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 631 ----------------N-GPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred ----------------c-CcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHH
Confidence 1 1227999999999999999999998865544 99999999998875
No 41
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.75 E-value=2.2e-16 Score=197.80 Aligned_cols=370 Identities=21% Similarity=0.260 Sum_probs=226.8
Q ss_pred HHHhhcccCCCCEEEEEcchhhhhc------cChhHHHHHHHHhccCCCCEEEEEeccCCCcccccCCCCCceeeccCcc
Q 000921 694 FEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSN 767 (1223)
Q Consensus 694 ~eVl~s~s~~~plIlyi~Dvek~l~------~~~~~~~~~~~~l~~~~~~~~ii~s~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1223)
-+++.+..+..|.||||++++.++. |+.+.++.|++.|+ .|.+.|||+.|..
T Consensus 264 ~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~-------------------- 321 (731)
T TIGR02639 264 KAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYE-------------------- 321 (731)
T ss_pred HHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHH--------------------
Confidence 3344443446799999999999874 24788999999998 7999999999931
Q ss_pred hhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHHH--HHHHhhccchhhhHHHHhhh
Q 000921 768 QTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLER--DVETLKGQSNIISIRSVLSR 845 (1223)
Q Consensus 768 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~~--d~~~l~~~~n~ih~~kml~~ 845 (1223)
.++...+.+.+|.+||. +|+|..|+.+.+++||+..... ..+.+......+...--+.
T Consensus 322 ------------------e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls- 381 (731)
T TIGR02639 322 ------------------EYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELS- 381 (731)
T ss_pred ------------------HHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhh-
Confidence 12223344668999995 8999999999999999854332 2222222222222221111
Q ss_pred CCCCCCCccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHHhhhhhhhhhhhhhhhccc
Q 000921 846 NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVV 925 (1223)
Q Consensus 846 ~~L~cddL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~lq~i~~~~~~~~~al~evv 925 (1223)
.-.+.+..+....|.-|-.++....+. +. ...+..|+.+++...+..+..+-... +. ..+..
T Consensus 382 ---------~ryi~~r~~P~kai~lld~a~a~~~~~----~~-~~~~~~v~~~~i~~~i~~~tgiP~~~--~~--~~~~~ 443 (731)
T TIGR02639 382 ---------ARYINDRFLPDKAIDVIDEAGASFRLR----PK-AKKKANVSVKDIENVVAKMAHIPVKT--VS--VDDRE 443 (731)
T ss_pred ---------hcccccccCCHHHHHHHHHhhhhhhcC----cc-cccccccCHHHHHHHHHHHhCCChhh--hh--hHHHH
Confidence 122233445555555444333323221 10 11235578888888777765442211 00 00000
Q ss_pred ChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCC---CCCCceEEEEcCCCChHHHHHH
Q 000921 926 TENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAK 1002 (1223)
Q Consensus 926 ~~~e~e~~ll~~vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl---~~PprGILL~GPPGTGKT~LAk 1002 (1223)
.-.++++.+. ..|.|++++++.|.+.+... +.|+ .+|...+||+||||||||+||+
T Consensus 444 ~l~~l~~~l~-------------~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~ 502 (731)
T TIGR02639 444 KLKNLEKNLK-------------AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAK 502 (731)
T ss_pred HHHHHHHHHh-------------cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHH
Confidence 0111222221 25788999999998877541 2222 2344468999999999999999
Q ss_pred HHHHHhCCceeEeecccccch--hhhcccccC-----------------C-------CChhHHHHHHHHHHHHHhccCCC
Q 000921 1003 AVATEAGANFINISMSSITSK--VDSMLGRRE-----------------N-------PGEHEAMRKMKNEFMVNWDGLRT 1056 (1223)
Q Consensus 1003 AIA~elg~pfI~Vs~seL~sk--IDsI~g~R~-----------------s-------~~e~e~~~rIl~~LL~~LDgl~~ 1056 (1223)
+||..++.+|+.++++++.+. +..+++... . ..-......+.+.|+..||.-.-
T Consensus 503 ~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~ 582 (731)
T TIGR02639 503 QLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATL 582 (731)
T ss_pred HHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCee
Confidence 999999999999999887653 222221110 0 00111223566777777775321
Q ss_pred C-------CCccEEEEeecCCCC-------------------------CCCHHHHcccCceeeecCCCHHHHHHHHHHHH
Q 000921 1057 K-------DKERVLVLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL 1104 (1223)
Q Consensus 1057 k-------~~~rVLVIATTNrp~-------------------------~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L 1104 (1223)
. +-++.+||+|||... .+.|+++.||+.+|.|.+.+.++..+|++..+
T Consensus 583 ~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 583 TDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred ecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 1 124678999998631 25678889999999999999999999999988
Q ss_pred hhcc-------cC---CcccHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHH
Q 000921 1105 AKEE-------LA---SDVDLEGIANM--ADGYSGSDLKNLCVTAAHCPIRE 1144 (1223)
Q Consensus 1105 ~k~~-------l~---~dvDL~~LA~~--TeGySGaDL~~L~~~Aa~~aire 1144 (1223)
.+.. +. ++..++.|+.. ...|..+.|+.+++.-...++.+
T Consensus 663 ~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 663 DELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred HHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 6521 11 22235666664 23466677777777766665543
No 42
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.75 E-value=2.3e-16 Score=196.95 Aligned_cols=371 Identities=18% Similarity=0.242 Sum_probs=228.6
Q ss_pred HHHHHHHhhcccCCCCEEEEEcchhhhhc------cChhHHHHHHHHhccCCCCEEEEEeccCCCcccccCCCCCceeec
Q 000921 690 INELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTK 763 (1223)
Q Consensus 690 i~~L~eVl~s~s~~~plIlyi~Dvek~l~------~~~~~~~~~~~~l~~~~~~~~ii~s~~~~~~~~~~~~~~~~~~~~ 763 (1223)
+..+++.+. +.++.||||+|++.++. +..++.+.|++.|+ .|.+.|||+.|..+
T Consensus 267 l~~l~~~l~---~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E--------------- 326 (758)
T PRK11034 267 FKALLKQLE---QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQE--------------- 326 (758)
T ss_pred HHHHHHHHH---hcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHH---------------
Confidence 344444443 36789999999999875 35789999999998 79999999999411
Q ss_pred cCcchhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHH--HHHHHhhccchhhhHHH
Q 000921 764 FGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLE--RDVETLKGQSNIISIRS 841 (1223)
Q Consensus 764 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~--~d~~~l~~~~n~ih~~k 841 (1223)
++...+.+.+|.+|| ..|+|..|+.+.++.|++.... +..+.+......+...
T Consensus 327 -----------------------~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a- 381 (758)
T PRK11034 327 -----------------------FSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAA- 381 (758)
T ss_pred -----------------------HHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHH-
Confidence 111123355788999 5899999999999999984221 1222233222222221
Q ss_pred HhhhCCCCCCCccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHHhhhhhhhhhhhhhh
Q 000921 842 VLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSL 921 (1223)
Q Consensus 842 ml~~~~L~cddL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~lq~i~~~~~~~~~al 921 (1223)
.+|..-.+.+..+.+..|.-|-.++....+. +... .+..|+.+++...+..+.++-... +..
T Consensus 382 ---------~~ls~ryi~~r~lPdKaidlldea~a~~~~~----~~~~-~~~~v~~~~i~~v~~~~tgip~~~--~~~-- 443 (758)
T PRK11034 382 ---------VELAVKYINDRHLPDKAIDVIDEAGARARLM----PVSK-RKKTVNVADIESVVARIARIPEKS--VSQ-- 443 (758)
T ss_pred ---------HHHhhccccCccChHHHHHHHHHHHHhhccC----cccc-cccccChhhHHHHHHHHhCCChhh--hhh--
Confidence 1122223344556666676666655544432 1111 123467777777766655442211 000
Q ss_pred hcccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCC---CCCCceEEEEcCCCChHH
Q 000921 922 KDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKT 998 (1223)
Q Consensus 922 ~evv~~~e~e~~ll~~vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl---~~PprGILL~GPPGTGKT 998 (1223)
.+...-..+++.+. ..|.|.+++++.|.+.|.... .|+ .+|..++||+||||||||
T Consensus 444 ~~~~~l~~l~~~L~-------------~~ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT 502 (758)
T PRK11034 444 SDRDTLKNLGDRLK-------------MLVFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKT 502 (758)
T ss_pred hHHHHHHHHHHHhc-------------ceEeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHH
Confidence 00000011222111 157899999999999886521 122 345567999999999999
Q ss_pred HHHHHHHHHhCCceeEeecccccch--hhhccccc-----------------CCC-------ChhHHHHHHHHHHHHHhc
Q 000921 999 MLAKAVATEAGANFINISMSSITSK--VDSMLGRR-----------------ENP-------GEHEAMRKMKNEFMVNWD 1052 (1223)
Q Consensus 999 ~LAkAIA~elg~pfI~Vs~seL~sk--IDsI~g~R-----------------~s~-------~e~e~~~rIl~~LL~~LD 1052 (1223)
.+|+++|..++.+|+.++++++... +..++|.. ... .-......+.+.|+..||
T Consensus 503 ~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred HHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 9999999999999999999887653 22232210 000 112233457777888887
Q ss_pred cCC-CC------CCccEEEEeecCCC-------------------------CCCCHHHHcccCceeeecCCCHHHHHHHH
Q 000921 1053 GLR-TK------DKERVLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKII 1100 (1223)
Q Consensus 1053 gl~-~k------~~~rVLVIATTNrp-------------------------~~LD~ALlRRFd~~I~VplPd~eeR~~IL 1100 (1223)
.-. .. +-++++||+|||.- ..+.|+++.|+|.+|.|+..+.++..+|+
T Consensus 583 ~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~ 662 (758)
T PRK11034 583 NGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV 662 (758)
T ss_pred cCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHH
Confidence 421 11 12468899999822 23668999999999999999999999999
Q ss_pred HHHHhhc-------ccCCcc---cHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHH
Q 000921 1101 RVILAKE-------ELASDV---DLEGIANMAD--GYSGSDLKNLCVTAAHCPIRE 1144 (1223)
Q Consensus 1101 r~~L~k~-------~l~~dv---DL~~LA~~Te--GySGaDL~~L~~~Aa~~aire 1144 (1223)
..++.+. ++.-.+ -++.|+.... .|-.+.|+.+++.-...++.+
T Consensus 663 ~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 663 DKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred HHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 9887542 222122 2455654432 355667777776666655544
No 43
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.9e-16 Score=194.82 Aligned_cols=355 Identities=20% Similarity=0.255 Sum_probs=227.4
Q ss_pred HHHHHhhcccCCCCEEEEEcchhhhhc-----c-ChhHHHHHHHHhccCCCCEEEEEeccCCCcccccCCCCCceeeccC
Q 000921 692 ELFEVALNESKSSPLIVFVKDIEKSLT-----G-NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFG 765 (1223)
Q Consensus 692 ~L~eVl~s~s~~~plIlyi~Dvek~l~-----~-~~~~~~~~~~~l~~~~~~~~ii~s~~~~~~~~~~~~~~~~~~~~~~ 765 (1223)
-|..|+.++.+..++||||+.+|+.++ | .+|+.|+||++|. .|-+-|||++|.
T Consensus 250 Rlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~------------------- 308 (786)
T COG0542 250 RLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTL------------------- 308 (786)
T ss_pred HHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccH-------------------
Confidence 356677777778899999999999887 2 4899999999999 899999999995
Q ss_pred cchhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHH--HHHHHHHHHhhccchhhhHHHHh
Q 000921 766 SNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWK--QQLERDVETLKGQSNIISIRSVL 843 (1223)
Q Consensus 766 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk--~ql~~d~~~l~~~~n~ih~~kml 843 (1223)
+.||...+.+.+|.+|| ++|.|.-|+.+.-+.|++ +.-.+..+.+...+..+.-+-.+
T Consensus 309 -------------------~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~L 368 (786)
T COG0542 309 -------------------DEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTL 368 (786)
T ss_pred -------------------HHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHH
Confidence 35666667788999999 999999999999999998 35667777777777777766555
Q ss_pred hhCCCCCCCccccccccccCChHHHHHHHhhhhhhhhhccCCCCCC-CCc-----ee-----ecch---hHHHHHHHHhh
Q 000921 844 SRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAK-----LK-----ISTE---SIMYGLNILQG 909 (1223)
Q Consensus 844 ~~~~L~cddL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~-~~k-----l~-----Is~e---sl~~~l~~lq~ 909 (1223)
.... +.+..+....|.-|-.++....+... .|..- ... +. +..+ .-...++.+..
T Consensus 369 S~RY----------I~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~ 437 (786)
T COG0542 369 SDRY----------IPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIK 437 (786)
T ss_pred HHhh----------cccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 5443 33455666677777666666665433 22210 000 00 0000 00000111111
Q ss_pred hh-hhhhhhhhhhhcccChhHHHHHHhcC-CCCCCCC------------CCCcccccCcHHHHHHHHHHHHccccChHhh
Q 000921 910 IQ-SESKSLKKSLKDVVTENEFEKKLLAD-VIPPSDI------------GVTFDDIGALENVKDTLKELVMLPLQRPELF 975 (1223)
Q Consensus 910 i~-~~~~~~~~al~evv~~~e~e~~ll~~-vI~~~e~------------~vtfdDIgGle~vk~~L~e~V~lpL~~pelf 975 (1223)
++ ...+...+.+..-++++++...+... -||.... ..--..|.|++++...+-..|..
T Consensus 438 ~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr-------- 509 (786)
T COG0542 438 LKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR-------- 509 (786)
T ss_pred HhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH--------
Confidence 11 00000000000001112222211110 0111100 00012578999999999888865
Q ss_pred hcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhC---CceeEeecccccch--hhhccccc----------------
Q 000921 976 CKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSK--VDSMLGRR---------------- 1031 (1223)
Q Consensus 976 ~k~gl---~~PprGILL~GPPGTGKT~LAkAIA~elg---~pfI~Vs~seL~sk--IDsI~g~R---------------- 1031 (1223)
.+.|+ .+|..++||.||.|+|||-||++||..+. -.+++++||+++.+ +..|.|..
T Consensus 510 aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaV 589 (786)
T COG0542 510 ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAV 589 (786)
T ss_pred HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhh
Confidence 23344 45656789999999999999999999996 89999999999887 44333221
Q ss_pred -CCC-------ChhHHHHHHHHHHHHHhccCCCCC-------CccEEEEeecCCC-------------------------
Q 000921 1032 -ENP-------GEHEAMRKMKNEFMVNWDGLRTKD-------KERVLVLAATNRP------------------------- 1071 (1223)
Q Consensus 1032 -~s~-------~e~e~~~rIl~~LL~~LDgl~~k~-------~~rVLVIATTNrp------------------------- 1071 (1223)
..+ .-..+...+++.||+.||.-.-.+ =++.+||+|||-=
T Consensus 590 Rr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~ 669 (786)
T COG0542 590 RRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVME 669 (786)
T ss_pred hcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHH
Confidence 010 011234568899999998543222 1358899999821
Q ss_pred ---CCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhh
Q 000921 1072 ---FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1106 (1223)
Q Consensus 1072 ---~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k 1106 (1223)
....|+++.|+|.+|.|...+.+...+|+...+..
T Consensus 670 ~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 670 ELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred HHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 01345778899999999999999999999998865
No 44
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.4e-17 Score=187.23 Aligned_cols=207 Identities=17% Similarity=0.266 Sum_probs=160.2
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccc
Q 000921 940 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1223)
Q Consensus 940 ~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~se 1019 (1223)
+...+ -+|+.++--.+.|+.|.+-+..+++..+.|.+.|. ...+|.|||||||||||+++.|+|+.+++.++.+..++
T Consensus 193 ~f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGk-awKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~ 270 (457)
T KOG0743|consen 193 GFPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGK-AWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTE 270 (457)
T ss_pred CCCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCc-chhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecc
Confidence 33344 79999999999999999999999999999999884 34599999999999999999999999999999888766
Q ss_pred ccch--------------------hhhcccccCCCCh-----h-HHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCC
Q 000921 1020 ITSK--------------------VDSMLGRRENPGE-----H-EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1073 (1223)
Q Consensus 1020 L~sk--------------------IDsI~g~R~s~~e-----~-e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~ 1073 (1223)
+... ||.-+..+..... + ...+-.+..||+.+||+....++--|||+|||+++.
T Consensus 271 v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~Ek 350 (457)
T KOG0743|consen 271 VKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEK 350 (457)
T ss_pred ccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhh
Confidence 4432 5544332222111 1 112356778999999999887667789999999999
Q ss_pred CCHHHHc--ccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccC--CcHHHHHHHHHH---HHHHHHHHHH
Q 000921 1074 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG--YSGSDLKNLCVT---AAHCPIREIL 1146 (1223)
Q Consensus 1074 LD~ALlR--RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeG--ySGaDL~~L~~~---Aa~~aireil 1146 (1223)
|||||+| |.|.+|+++..+.++-..+++.|+.-.. +..-+.++.+.-++ .|+||+...... .+..++++++
T Consensus 351 LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv 428 (457)
T KOG0743|consen 351 LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLV 428 (457)
T ss_pred cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHH
Confidence 9999999 9999999999999999999999997532 12234445544443 699998876532 4666777776
Q ss_pred HHHH
Q 000921 1147 EKEK 1150 (1223)
Q Consensus 1147 ek~k 1150 (1223)
+..+
T Consensus 429 ~~l~ 432 (457)
T KOG0743|consen 429 EALE 432 (457)
T ss_pred HHHH
Confidence 6544
No 45
>CHL00181 cbbX CbbX; Provisional
Probab=99.70 E-value=2.2e-16 Score=177.78 Aligned_cols=214 Identities=15% Similarity=0.217 Sum_probs=146.0
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCceeEeecccc
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 1020 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~P--prGILL~GPPGTGKT~LAkAIA~el-------g~pfI~Vs~seL 1020 (1223)
+|+|++++|++|++++.+ +..+..+.+.|+..+ ...+||+||||||||++|+++|..+ ..+|+.++.+++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 799999999999999877 445666666776443 3358999999999999999999986 236888887765
Q ss_pred cch----------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCC-----CC
Q 000921 1021 TSK----------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----FD 1073 (1223)
Q Consensus 1021 ~sk----------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp-----~~ 1073 (1223)
... ||.+..--...+.......+.+.|+..|+... .+++||+|++.. ..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~----~~~~vI~ag~~~~~~~~~~ 178 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR----DDLVVIFAGYKDRMDKFYE 178 (287)
T ss_pred HHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC----CCEEEEEeCCcHHHHHHHh
Confidence 432 33332110011112233567778888887532 457787877532 23
Q ss_pred CCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHH----Hc--cCCc-HHHHHHHHHHHHHHHHHHH
Q 000921 1074 LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIAN----MA--DGYS-GSDLKNLCVTAAHCPIREI 1145 (1223)
Q Consensus 1074 LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~----~T--eGyS-GaDL~~L~~~Aa~~airei 1145 (1223)
++|++++||+..|+|+.++.+++.+|++.++.+.... .+.....++. .. +.|. +++++++++.|..+...|+
T Consensus 179 ~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~ 258 (287)
T CHL00181 179 SNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRI 258 (287)
T ss_pred cCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999875432 1222333333 22 3455 8999999999998877776
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHH
Q 000921 1146 LEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKY 1182 (1223)
Q Consensus 1146 lek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ 1182 (1223)
+.... ......+...++.+||.+
T Consensus 259 ~~~~~--------------~~~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 259 FESGG--------------RVLTKADLVTIEAEDILK 281 (287)
T ss_pred HcCCC--------------CCCCHHHHhCCCHHHHhH
Confidence 54311 011223556788888754
No 46
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.8e-16 Score=190.35 Aligned_cols=221 Identities=36% Similarity=0.502 Sum_probs=188.0
Q ss_pred ccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch-----------------------
Q 000921 967 LPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----------------------- 1023 (1223)
Q Consensus 967 lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk----------------------- 1023 (1223)
+|+.+++.|...+ ..+++++++|||||||||++++++|.+ +..++.++.+.+..+
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 79 (494)
T COG0464 2 LPLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSI 79 (494)
T ss_pred CCccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCe
Confidence 4677888888887 457799999999999999999999999 766666777665443
Q ss_pred -----hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHc--ccCceeeecCCCHHHH
Q 000921 1024 -----VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNR 1096 (1223)
Q Consensus 1024 -----IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlR--RFd~~I~VplPd~eeR 1096 (1223)
+|.+.+.+.. ......++++.+++..++++. ... +++++.||++..+++++++ ||++.++++.|+...|
T Consensus 80 i~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (494)
T COG0464 80 IFIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGR 155 (494)
T ss_pred EeechhhhcccCccc-cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHH
Confidence 6666766666 444566789999999999998 445 9999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 000921 1097 EKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLK 1176 (1223)
Q Consensus 1097 ~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT 1176 (1223)
.+|+......+....+.++..+|..+.||+++|+..+|..+.+.++++.+ ........++
T Consensus 156 ~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------------------~~~~~~~~~~ 215 (494)
T COG0464 156 LEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------------------DLVGEYIGVT 215 (494)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------------------ccCccccccc
Confidence 99999999888777789999999999999999999999999998888743 0112345689
Q ss_pred HHHHHHHHHhcCccccccccccccchhHhhhcCCCCcCc
Q 000921 1177 MDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1215 (1223)
Q Consensus 1177 ~eDF~~ALe~v~PS~s~e~~~~~p~v~WnDIGGl~~vKK 1215 (1223)
++||.++++++.++ ++.....+.+.|.|+||++..|.
T Consensus 216 ~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~ 252 (494)
T COG0464 216 EDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKE 252 (494)
T ss_pred HHHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHH
Confidence 99999999999999 67677889999999999988775
No 47
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.6e-16 Score=179.89 Aligned_cols=179 Identities=26% Similarity=0.455 Sum_probs=141.0
Q ss_pred CcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc-----
Q 000921 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT----- 1021 (1223)
Q Consensus 947 tfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~----- 1021 (1223)
.|++++....+...|+.+... ..+. +. ...|-+.||||||||||||++|+.||..+|+.+-.+.+.++.
T Consensus 353 pl~~ViL~psLe~Rie~lA~a-TaNT----K~-h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~q 426 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIA-TANT----KK-HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQ 426 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHH-hccc----cc-ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchH
Confidence 477888888888888776544 1111 11 134668999999999999999999999999999888877642
Q ss_pred -----------------------chhhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHH
Q 000921 1022 -----------------------SKVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAV 1078 (1223)
Q Consensus 1022 -----------------------skIDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~AL 1078 (1223)
+..|.++..|......+..+..+|.||=---. ..+.++++.+||+|.++|.++
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDsAV 502 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDSAV 502 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhHHH
Confidence 22677888888777788888899988732211 236688999999999999999
Q ss_pred HcccCceeeecCCCHHHHHHHHHHHHhhcccC------------------------C---cccHHHHHHHccCCcHHHHH
Q 000921 1079 VRRLPRRLMVNLPDAPNREKIIRVILAKEELA------------------------S---DVDLEGIANMADGYSGSDLK 1131 (1223)
Q Consensus 1079 lRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~------------------------~---dvDL~~LA~~TeGySGaDL~ 1131 (1223)
-.|||..|+||+|..++|.+||..|+.+.-+. . +--+.+.|+.|+||+|++|.
T Consensus 503 ~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREia 582 (630)
T KOG0742|consen 503 NDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIA 582 (630)
T ss_pred HhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHH
Confidence 99999999999999999999999998763211 0 11167889999999999999
Q ss_pred HHHH
Q 000921 1132 NLCV 1135 (1223)
Q Consensus 1132 ~L~~ 1135 (1223)
.|+.
T Consensus 583 kLva 586 (630)
T KOG0742|consen 583 KLVA 586 (630)
T ss_pred HHHH
Confidence 8874
No 48
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.3e-16 Score=177.14 Aligned_cols=167 Identities=28% Similarity=0.362 Sum_probs=130.4
Q ss_pred CCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------
Q 000921 938 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------- 1009 (1223)
Q Consensus 938 vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg-------- 1009 (1223)
.+|..+-.--|+.++--.++|+.|..++...+...+.-....+....+-||||||||||||+|+||+|+.+.
T Consensus 131 ~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~ 210 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYY 210 (423)
T ss_pred eccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccc
Confidence 344444456688888888999999999887665554433344444557799999999999999999999983
Q ss_pred -CceeEeecccccch---------------------------------hhhcccccCC---CChhHHHHHHHHHHHHHhc
Q 000921 1010 -ANFINISMSSITSK---------------------------------VDSMLGRREN---PGEHEAMRKMKNEFMVNWD 1052 (1223)
Q Consensus 1010 -~pfI~Vs~seL~sk---------------------------------IDsI~g~R~s---~~e~e~~~rIl~~LL~~LD 1052 (1223)
..+++|++..++++ +++|...|.+ ..+....-|++|.+|++||
T Consensus 211 ~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD 290 (423)
T KOG0744|consen 211 KGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD 290 (423)
T ss_pred cceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Confidence 35788999887766 3334333321 2233334479999999999
Q ss_pred cCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhh
Q 000921 1053 GLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1106 (1223)
Q Consensus 1053 gl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k 1106 (1223)
++... .+|+|++|+|-.+.||.|+..|-|.+.+|+.|+...|.+|++.++..
T Consensus 291 rlK~~--~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 291 RLKRY--PNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HhccC--CCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 99654 78999999999999999999999999999999999999999998865
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.66 E-value=9.4e-16 Score=172.45 Aligned_cols=212 Identities=15% Similarity=0.202 Sum_probs=147.0
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CceeEeecccc
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 1020 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~--PprGILL~GPPGTGKT~LAkAIA~elg-------~pfI~Vs~seL 1020 (1223)
+++|++++|++|.+++.+ +..++.+.+.|+.. |..++||+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999999888 66777777777643 446899999999999999999998872 37888888766
Q ss_pred cch----------------------hhhcc---cccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCC--CC-
Q 000921 1021 TSK----------------------VDSML---GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PF- 1072 (1223)
Q Consensus 1021 ~sk----------------------IDsI~---g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNr--p~- 1072 (1223)
.+. ||.+. +.+. .......+.+.|+..|+.. ..+++||++++. .+
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~---~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDN---ERDYGQEAIEILLQVMENQ----RDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccCcEEEEechhhhccCCC---ccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHH
Confidence 432 33332 2111 1122345667788888753 256777777753 22
Q ss_pred --CCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc------cC-CcHHHHHHHHHHHHHHHH
Q 000921 1073 --DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA------DG-YSGSDLKNLCVTAAHCPI 1142 (1223)
Q Consensus 1073 --~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~T------eG-ySGaDL~~L~~~Aa~~ai 1142 (1223)
.+++++++||+..|+||.++.+++..|++.++.+.... .+..+..++... +. -++++|+++++.|..+..
T Consensus 175 ~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~ 254 (284)
T TIGR02880 175 FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQA 254 (284)
T ss_pred HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHH
Confidence 25899999999999999999999999999999885432 222234444431 21 258999999999988777
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHH
Q 000921 1143 REILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 1183 (1223)
Q Consensus 1143 reilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~A 1183 (1223)
.|+..... ......+...|+.+|+..+
T Consensus 255 ~r~~~~~~--------------~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 255 NRLFCDLD--------------RVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHhcCcC--------------CCCCHHHHhCCCHHHHhhc
Confidence 76543210 0112234567888887554
No 50
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.65 E-value=1.2e-15 Score=169.12 Aligned_cols=191 Identities=15% Similarity=0.199 Sum_probs=129.2
Q ss_pred cccccCcHHHHHHHHHHHHccccChHhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCceeEeecc
Q 000921 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMS 1018 (1223)
Q Consensus 948 fdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~P--prGILL~GPPGTGKT~LAkAIA~el-------g~pfI~Vs~s 1018 (1223)
+++++|++++|+.|++++.++..... ..+.|+..+ ..++|||||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~-~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEK-RKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 56899999999999999988654432 223444323 2578999999999999999999875 2467788776
Q ss_pred cccch-------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCC--
Q 000921 1019 SITSK-------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-- 1071 (1223)
Q Consensus 1019 eL~sk-------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp-- 1071 (1223)
++.+. +|.|.. .++.......++.|+..|+... ..+++|+++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~----~~~~~~~~~~i~~Ll~~~e~~~----~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLAR----GGEKDFGKEAIDTLVKGMEDNR----NEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccCCEEEEechhhhcc----CCccchHHHHHHHHHHHHhccC----CCEEEEecCCcchh
Confidence 65432 222221 1111223456777888887642 445555555332
Q ss_pred ---CCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc-------c--CCcHHHHHHHHHHHH
Q 000921 1072 ---FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-------D--GYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1072 ---~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~T-------e--GySGaDL~~L~~~Aa 1138 (1223)
..+++++++||+..|.||.++.+++.+|++.++...... ++..+..|+... . .-.++.+++++..|.
T Consensus 156 ~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~ 235 (261)
T TIGR02881 156 DYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAI 235 (261)
T ss_pred HHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 237889999999999999999999999999999875432 222244443321 1 235788888888888
Q ss_pred HHHHHHHHH
Q 000921 1139 HCPIREILE 1147 (1223)
Q Consensus 1139 ~~aireile 1147 (1223)
.+...+++.
T Consensus 236 ~~~~~r~~~ 244 (261)
T TIGR02881 236 RRQAVRLLD 244 (261)
T ss_pred HHHHHHHhc
Confidence 777666553
No 51
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.61 E-value=1.6e-13 Score=174.20 Aligned_cols=186 Identities=20% Similarity=0.236 Sum_probs=122.0
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 1023 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl---~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk 1023 (1223)
.|.|+++.++.+.+.+... +.|+ .+|...+||+||||||||.+|++||..+ ...|+.++++++.+.
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred eEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 6889999999998888642 1222 2333348999999999999999999998 457899999887654
Q ss_pred --hhhcccccCC-----------------C-------ChhHHHHHHHHHHHHHhccCCCCC-------CccEEEEeecCC
Q 000921 1024 --VDSMLGRREN-----------------P-------GEHEAMRKMKNEFMVNWDGLRTKD-------KERVLVLAATNR 1070 (1223)
Q Consensus 1024 --IDsI~g~R~s-----------------~-------~e~e~~~rIl~~LL~~LDgl~~k~-------~~rVLVIATTNr 1070 (1223)
+..++|.... . .-......+.+.|+..||.-.-.+ -++.+||+|||.
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 3333221100 0 001122345666777776432111 156889999984
Q ss_pred CC-----------------------------CCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhc--------ccC---
Q 000921 1071 PF-----------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--------ELA--- 1110 (1223)
Q Consensus 1071 p~-----------------------------~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~--------~l~--- 1110 (1223)
.. .+.|+++.|++ .|.|...+.++..+|+...+... ++.
T Consensus 719 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i 797 (852)
T TIGR03345 719 GSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVY 797 (852)
T ss_pred chHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 11 14567888997 88999999999999999887552 221
Q ss_pred CcccHHHHHHHccC--CcHHHHHHHHHHHHHHHHHH
Q 000921 1111 SDVDLEGIANMADG--YSGSDLKNLCVTAAHCPIRE 1144 (1223)
Q Consensus 1111 ~dvDL~~LA~~TeG--ySGaDL~~L~~~Aa~~aire 1144 (1223)
++.-++.|+....+ |-++.|+++++.-...++.+
T Consensus 798 ~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 798 SEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred CHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 22225667776643 56778888887776666654
No 52
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.56 E-value=1.3e-12 Score=166.19 Aligned_cols=384 Identities=18% Similarity=0.224 Sum_probs=208.6
Q ss_pred CCCCEEEEEcchhhhhc-----cChhHHHHHHHHhccCCCCEEEEEeccCCCcccccCCCCCceeeccCcchhhhccccC
Q 000921 702 KSSPLIVFVKDIEKSLT-----GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAF 776 (1223)
Q Consensus 702 ~~~plIlyi~Dvek~l~-----~~~~~~~~~~~~l~~~~~~~~ii~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1223)
+.+++||||++++.++. |..+..+.|++.|. .|.+.|||..|..+
T Consensus 269 ~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~e---------------------------- 318 (821)
T CHL00095 269 ENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDE---------------------------- 318 (821)
T ss_pred hcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHH----------------------------
Confidence 46899999999999875 35578999999998 79999999999411
Q ss_pred CCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHH--HHHHHhhccchhhhHHHHhhhCCCCCCCcc
Q 000921 777 PDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLE--RDVETLKGQSNIISIRSVLSRNGLDCVDLE 854 (1223)
Q Consensus 777 ~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~--~d~~~l~~~~n~ih~~kml~~~~L~cddL~ 854 (1223)
++...+....|..||. .|++..|+.+....++....+ ++...+....+.+....-+..+
T Consensus 319 ----------y~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~-------- 379 (821)
T CHL00095 319 ----------YRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ-------- 379 (821)
T ss_pred ----------HHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc--------
Confidence 1111223457888995 689999998888888763222 2222222222333222222222
Q ss_pred ccccccccCChHHHHHHHhhhhhhhhhccCCCCCCC---Cce---------eecchhHHHHHH----------HHhhhhh
Q 000921 855 SLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD---AKL---------KISTESIMYGLN----------ILQGIQS 912 (1223)
Q Consensus 855 ~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~---~kl---------~Is~esl~~~l~----------~lq~i~~ 912 (1223)
.+.+..+....|.-|-.++...++.....|.... .++ .+..+++..+.. .+..+..
T Consensus 380 --yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (821)
T CHL00095 380 --YIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQ 457 (821)
T ss_pred --cCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445555555555544444443211111000 000 000000000000 0000000
Q ss_pred hhhhh--hhhhhcccChhHHHHHHhcC-CCCCCCCC-----------CC-cccccCcHHHHHHHHHHHHccccChHhhhc
Q 000921 913 ESKSL--KKSLKDVVTENEFEKKLLAD-VIPPSDIG-----------VT-FDDIGALENVKDTLKELVMLPLQRPELFCK 977 (1223)
Q Consensus 913 ~~~~~--~~al~evv~~~e~e~~ll~~-vI~~~e~~-----------vt-fdDIgGle~vk~~L~e~V~lpL~~pelf~k 977 (1223)
..... .......++.+++...+... -||..... -. -+.|.|++++++.|...+... +
T Consensus 458 ~~~~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~--------~ 529 (821)
T CHL00095 458 SKKTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA--------R 529 (821)
T ss_pred HHHhhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH--------h
Confidence 00000 00000112333332222110 01111100 00 136889999999998887541 1
Q ss_pred CCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch--hhhccccc-----------------C
Q 000921 978 GQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--VDSMLGRR-----------------E 1032 (1223)
Q Consensus 978 ~gl---~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk--IDsI~g~R-----------------~ 1032 (1223)
.|+ .+|...+||+||+|||||+||++||..+ +.+++.++++++.+. +..+.+.. .
T Consensus 530 ~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~ 609 (821)
T CHL00095 530 VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK 609 (821)
T ss_pred hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHh
Confidence 122 3444568999999999999999999987 468999999887543 22222110 0
Q ss_pred C-------CChhHHHHHHHHHHHHHhccCCCC-------CCccEEEEeecCCCCC-------------------------
Q 000921 1033 N-------PGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRPFD------------------------- 1073 (1223)
Q Consensus 1033 s-------~~e~e~~~rIl~~LL~~LDgl~~k-------~~~rVLVIATTNrp~~------------------------- 1073 (1223)
. ..-......+.+.|+..|+.-.-. +-++.+||+|||....
T Consensus 610 ~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~ 689 (821)
T CHL00095 610 KPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKR 689 (821)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHH
Confidence 0 011122345677778777742110 1256889999984311
Q ss_pred ------------CCHHHHcccCceeeecCCCHHHHHHHHHHHHhhc-------ccC---CcccHHHHHHHc-c-CCcHHH
Q 000921 1074 ------------LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------ELA---SDVDLEGIANMA-D-GYSGSD 1129 (1223)
Q Consensus 1074 ------------LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~-------~l~---~dvDL~~LA~~T-e-GySGaD 1129 (1223)
+.|+++.|+|.+|.|.+.+.++..+|++..+.+. ++. ++...+.|+... + .|-++.
T Consensus 690 ~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~ 769 (821)
T CHL00095 690 LSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARP 769 (821)
T ss_pred HHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhh
Confidence 2356788999999999999999999999888652 111 122245566652 2 455666
Q ss_pred HHHHHHHHHHHHHHH
Q 000921 1130 LKNLCVTAAHCPIRE 1144 (1223)
Q Consensus 1130 L~~L~~~Aa~~aire 1144 (1223)
|+.+++.-...++.+
T Consensus 770 l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 770 LRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776666555544
No 53
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.56 E-value=5.6e-13 Score=169.88 Aligned_cols=189 Identities=20% Similarity=0.320 Sum_probs=126.1
Q ss_pred ccccCcHHHHHHHHHHHHccccChHhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 949 dDIgGle~vk~~L~e~V~lpL~~pelf~k~gl---~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
..|.|.+.+++.+.+.+... ..|+ .+|...+||+||+|||||++|++||..+ +.+|+.++++++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 36899999999998887641 1222 2455679999999999999999999987 57899999988765
Q ss_pred h--hhhccccc-----------------CCC-------ChhHHHHHHHHHHHHHhccCCCC-------CCccEEEEeecC
Q 000921 1023 K--VDSMLGRR-----------------ENP-------GEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATN 1069 (1223)
Q Consensus 1023 k--IDsI~g~R-----------------~s~-------~e~e~~~rIl~~LL~~LDgl~~k-------~~~rVLVIATTN 1069 (1223)
. +-.+++.. ... .-......+.+.|+..|+.-.-. +-++.+||+|||
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 4 11121110 000 00112234566677777532111 125678999999
Q ss_pred CCCC-------------------------CCHHHHcccCceeeecCCCHHHHHHHHHHHHhhc-------ccC---Cccc
Q 000921 1070 RPFD-------------------------LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------ELA---SDVD 1114 (1223)
Q Consensus 1070 rp~~-------------------------LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~-------~l~---~dvD 1114 (1223)
.... +.|+|+.|++.++.|.+++.++..+|+...+... ++. ++..
T Consensus 717 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a 796 (852)
T TIGR03346 717 LGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAA 796 (852)
T ss_pred cchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHH
Confidence 7221 3467778999999999999999999999887531 111 2223
Q ss_pred HHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHH
Q 000921 1115 LEGIANMAD--GYSGSDLKNLCVTAAHCPIREI 1145 (1223)
Q Consensus 1115 L~~LA~~Te--GySGaDL~~L~~~Aa~~airei 1145 (1223)
++.|++..- .+..+.|+++++.....++.+.
T Consensus 797 ~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~ 829 (852)
T TIGR03346 797 LDFLAEAGYDPVYGARPLKRAIQREIENPLAKK 829 (852)
T ss_pred HHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 566776532 5678889999988887777653
No 54
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.54 E-value=1.6e-13 Score=154.58 Aligned_cols=175 Identities=20% Similarity=0.229 Sum_probs=122.0
Q ss_pred CcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch---
Q 000921 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--- 1023 (1223)
Q Consensus 947 tfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk--- 1023 (1223)
+|+++.|.+++++.|..++.....+ ..++.++|||||||||||+||+++|++++.++..+.++.+...
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l 72 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDL 72 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhH
Confidence 6899999999999999888542211 2234689999999999999999999999998877665432211
Q ss_pred --------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCC--------------CCCccEEEEeecCCCCCCC
Q 000921 1024 --------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT--------------KDKERVLVLAATNRPFDLD 1075 (1223)
Q Consensus 1024 --------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~--------------k~~~rVLVIATTNrp~~LD 1075 (1223)
||++-. ........|...|+.... ....++.+|++||++..++
T Consensus 73 ~~~l~~~~~~~vl~iDEi~~---------l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~ 143 (305)
T TIGR00635 73 AAILTNLEEGDVLFIDEIHR---------LSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLT 143 (305)
T ss_pred HHHHHhcccCCEEEEehHhh---------hCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccC
Confidence 222210 001112223333322110 0112478999999999999
Q ss_pred HHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHHHH
Q 000921 1076 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1140 (1223)
Q Consensus 1076 ~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~ 1140 (1223)
+++++||...+.++.|+.+++.+|++.......+. ++..++.|++.+.|+- +.+.+++..+...
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDF 208 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHH
Confidence 99999999899999999999999999988765443 3445788999999865 5666777665433
No 55
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.52 E-value=3.7e-14 Score=138.29 Aligned_cols=102 Identities=38% Similarity=0.616 Sum_probs=84.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch-----------------------------hhhcccccCCCChh
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-----------------------------VDSMLGRRENPGEH 1037 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk-----------------------------IDsI~g~R~s~~e~ 1037 (1223)
||||||||||||++|+++|+.++.+|+.+++.++.+. +|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 7999999999999999999999999999999887622 45555554 22344
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHH-cccCceeeecC
Q 000921 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV-RRLPRRLMVNL 1090 (1223)
Q Consensus 1038 e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALl-RRFd~~I~Vpl 1090 (1223)
.....+++.|+..|+..... +.+++||+|||+++.++++++ +||+++|++|+
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55678899999999998654 467999999999999999999 89999999974
No 56
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.51 E-value=5.4e-12 Score=160.78 Aligned_cols=188 Identities=19% Similarity=0.294 Sum_probs=116.8
Q ss_pred ccccCcHHHHHHHHHHHHccccChHhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 949 dDIgGle~vk~~L~e~V~lpL~~pelf~k~gl---~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
..|.|.+.+++.|...|... +.|+ .+|...+||+||+|||||++|++||..+ +.+|+.++++++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 35888899888888887541 1122 2333468999999999999999999987 56899999988755
Q ss_pred h--hhhccccc-C----------------CC-------ChhHHHHHHHHHHHHHhccCC-C------CCCccEEEEeecC
Q 000921 1023 K--VDSMLGRR-E----------------NP-------GEHEAMRKMKNEFMVNWDGLR-T------KDKERVLVLAATN 1069 (1223)
Q Consensus 1023 k--IDsI~g~R-~----------------s~-------~e~e~~~rIl~~LL~~LDgl~-~------k~~~rVLVIATTN 1069 (1223)
. +..++|.. + .. .-......+.+.|+..|+.-. . .+-++.+||+|||
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 3 22222110 0 00 001112345566666665321 1 0124567899998
Q ss_pred CC-------------------------CCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhc-------ccCCccc---
Q 000921 1070 RP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------ELASDVD--- 1114 (1223)
Q Consensus 1070 rp-------------------------~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~-------~l~~dvD--- 1114 (1223)
.. ..+.|+|+.|++..+.|.+++.+...+|++.++.+. ++.-.++
T Consensus 720 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~a 799 (857)
T PRK10865 720 LGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEA 799 (857)
T ss_pred cchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHH
Confidence 62 124568899999999999999999999999888663 1222233
Q ss_pred HHHHHHHcc--CCcHHHHHHHHHHHHHHHHHH
Q 000921 1115 LEGIANMAD--GYSGSDLKNLCVTAAHCPIRE 1144 (1223)
Q Consensus 1115 L~~LA~~Te--GySGaDL~~L~~~Aa~~aire 1144 (1223)
++.|+.... -|-.+.|+.+++.-...++.+
T Consensus 800 l~~L~~~gy~~~~GARpL~r~I~~~i~~~la~ 831 (857)
T PRK10865 800 LKLLSENGYDPVYGARPLKRAIQQQIENPLAQ 831 (857)
T ss_pred HHHHHHcCCCccCChHHHHHHHHHHHHHHHHH
Confidence 334443221 123556776666655555443
No 57
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.51 E-value=5.1e-13 Score=152.89 Aligned_cols=186 Identities=22% Similarity=0.258 Sum_probs=123.9
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch--
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-- 1023 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk-- 1023 (1223)
.+|++++|.+++++.|..++..... . ..++.++|||||||||||++|+++|++++..+..++++.+...
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~ 92 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGD 92 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHH
Confidence 5799999999999999988754111 1 2345789999999999999999999999999887766533211
Q ss_pred hhhcccccCCCC-----h-hHHHHHHHHHHHHHhccCC-----CC---------CCccEEEEeecCCCCCCCHHHHcccC
Q 000921 1024 VDSMLGRRENPG-----E-HEAMRKMKNEFMVNWDGLR-----TK---------DKERVLVLAATNRPFDLDEAVVRRLP 1083 (1223)
Q Consensus 1024 IDsI~g~R~s~~-----e-~e~~~rIl~~LL~~LDgl~-----~k---------~~~rVLVIATTNrp~~LD~ALlRRFd 1083 (1223)
+-.++..-.... + +.........|...|+... .. .-.++.+|++||++..+++++++||.
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~ 172 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFG 172 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcC
Confidence 111110000000 0 0000111112223332211 00 01237889999999999999999999
Q ss_pred ceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 000921 1084 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1141 (1223)
Q Consensus 1084 ~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~a 1141 (1223)
..+.++.|+.+++.+|++......++. ++..+..|++.+.|.- +.+..++..+...+
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a 230 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFA 230 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 999999999999999999988776544 3334789999998854 66666666554443
No 58
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.47 E-value=2.7e-13 Score=146.86 Aligned_cols=180 Identities=22% Similarity=0.280 Sum_probs=112.4
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch--
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-- 1023 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk-- 1023 (1223)
.+|+|++|+++++..++-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++++.+-..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~d 91 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGD 91 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHH
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHH
Confidence 58999999999999998777642211 1234689999999999999999999999999999988654332
Q ss_pred hhhcccccCC------CChhHHHHHHHHHHHHHhccCCC-----CC---------CccEEEEeecCCCCCCCHHHHcccC
Q 000921 1024 VDSMLGRREN------PGEHEAMRKMKNEFMVNWDGLRT-----KD---------KERVLVLAATNRPFDLDEAVVRRLP 1083 (1223)
Q Consensus 1024 IDsI~g~R~s------~~e~e~~~rIl~~LL~~LDgl~~-----k~---------~~rVLVIATTNrp~~LD~ALlRRFd 1083 (1223)
+-.++..-.. +.-|.....+...|+-.|+...- .+ -.++-+|+||++...|...++.||.
T Consensus 92 l~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFg 171 (233)
T PF05496_consen 92 LAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFG 171 (233)
T ss_dssp HHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSS
T ss_pred HHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcc
Confidence 1111111000 11122223344455566654321 11 1357899999999999999999999
Q ss_pred ceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHH
Q 000921 1084 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1135 (1223)
Q Consensus 1084 ~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~ 1135 (1223)
....+...+.++-.+|++......++. .+.-..+||+++.| |++--.+|++
T Consensus 172 i~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 172 IVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp EEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred eecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 888999999999999999876665544 33447889999987 5554444443
No 59
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.42 E-value=2.1e-12 Score=163.23 Aligned_cols=179 Identities=18% Similarity=0.259 Sum_probs=117.1
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch------
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK------ 1023 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk------ 1023 (1223)
+++|++++++.|.+++..+..+. . . ....+||+||||||||++|++||..++.+|+.+++..+.+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~-~-~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------K-M-KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------C-C-CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 58999999999999887533221 1 1 22479999999999999999999999999999876543211
Q ss_pred ------------------------------hhhcccccCCCChhHHHHHHHHHHHHHhcc-----CC------CCCCccE
Q 000921 1024 ------------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDG-----LR------TKDKERV 1062 (1223)
Q Consensus 1024 ------------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDg-----l~------~k~~~rV 1062 (1223)
||.+..... + ...+.|+..||. +. ..+-.++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~--~------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFR--G------DPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccC--C------CHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 333332111 0 123445555552 11 0012478
Q ss_pred EEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhc-----ccC------CcccHHHHHHH-ccCCcHHHH
Q 000921 1063 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-----ELA------SDVDLEGIANM-ADGYSGSDL 1130 (1223)
Q Consensus 1063 LVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~-----~l~------~dvDL~~LA~~-TeGySGaDL 1130 (1223)
++|+|||.++.|++++++|| ..|+|+.|+.+++.+|++.++.+. .+. .+..+..|++. |..+..++|
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l 543 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNL 543 (775)
T ss_pred EEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHH
Confidence 99999999999999999999 579999999999999999887321 221 12224444442 223444556
Q ss_pred HHHHHHHHHHHHHHH
Q 000921 1131 KNLCVTAAHCPIREI 1145 (1223)
Q Consensus 1131 ~~L~~~Aa~~airei 1145 (1223)
+.++......+++++
T Consensus 544 ~r~i~~~~~~~~~~~ 558 (775)
T TIGR00763 544 ERQIEKICRKAAVKL 558 (775)
T ss_pred HHHHHHHHHHHHHHH
Confidence 655555544444433
No 60
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.41 E-value=7.6e-12 Score=152.12 Aligned_cols=197 Identities=23% Similarity=0.329 Sum_probs=131.4
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceeEe
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el----------g~pfI~V 1015 (1223)
.+|++|.|.+..++.++..+.. ..+..+||+||||||||++|++++.++ +.+|+.+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 6799999999999888765321 123589999999999999999998753 4689999
Q ss_pred ecccc--cch-h-hhccc--------------c------------cCCCC------hhHHHHHHHHHHHHHhccCC----
Q 000921 1016 SMSSI--TSK-V-DSMLG--------------R------------RENPG------EHEAMRKMKNEFMVNWDGLR---- 1055 (1223)
Q Consensus 1016 s~seL--~sk-I-DsI~g--------------~------------R~s~~------e~e~~~rIl~~LL~~LDgl~---- 1055 (1223)
++... ... + |.+++ . +...+ -+.......+.|+..|+.-.
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~ 207 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLD 207 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeec
Confidence 98642 110 1 11110 0 00000 01111233444454443210
Q ss_pred ----C-----------------CCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-Ccc
Q 000921 1056 ----T-----------------KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDV 1113 (1223)
Q Consensus 1056 ----~-----------------k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dv 1113 (1223)
. ...+-.+|++||+.|+.|++++++|| ..|.++.++.+++.+|++..+.+.++. ++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~ 286 (531)
T TIGR02902 208 SAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKH 286 (531)
T ss_pred cccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHH
Confidence 0 01122566677889999999999999 578899999999999999999886643 333
Q ss_pred cHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHH
Q 000921 1114 DLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHE 1185 (1223)
Q Consensus 1114 DL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe 1185 (1223)
.++.|+..+. +++++.++|+.|+..+..+ ....|+.+|+.+++.
T Consensus 287 al~~I~~y~~--n~Rel~nll~~Aa~~A~~~--------------------------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 287 ALELIVKYAS--NGREAVNIVQLAAGIALGE--------------------------GRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHhhh--hHHHHHHHHHHHHHHHhhC--------------------------CCcEEcHHHHHHHhC
Confidence 4666776653 7899999999988655432 124589999999987
No 61
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.9e-12 Score=150.26 Aligned_cols=184 Identities=23% Similarity=0.304 Sum_probs=126.3
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch------
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK------ 1023 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk------ 1023 (1223)
|-.||+++|+.|.|+|.-...+. ....+-+.|+||||+|||++|++||+.++..|++++..-+.+.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrg--------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRG--------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcc--------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 77999999999999987522111 2233567899999999999999999999999999987665442
Q ss_pred ------------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCC-----------CCCccE
Q 000921 1024 ------------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-----------KDKERV 1062 (1223)
Q Consensus 1024 ------------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~-----------k~~~rV 1062 (1223)
||.+. ++..|+.. ..||..||--.. -+-.+|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG--~g~qGDPa------sALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLG--SGHQGDPA------SALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhC--CCCCCChH------HHHHHhcChhhccchhhhccccccchhhe
Confidence 56665 22222221 234444442111 123579
Q ss_pred EEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhc-----ccC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 000921 1063 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-----ELA-SDVDLEGIANMADGYSGSDLKNLCVT 1136 (1223)
Q Consensus 1063 LVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~-----~l~-~dvDL~~LA~~TeGySGaDL~~L~~~ 1136 (1223)
++|+|+|..+.|+++|+.|. ..|+++-...++..+|-+.||-.. ++. ..+++.+-| .-+=|+..|++
T Consensus 556 LFicTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~a------l~~lI~~YcrE 628 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDA------LLALIERYCRE 628 (906)
T ss_pred EEEEeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHH------HHHHHHHHHHH
Confidence 99999999999999999999 789999999999999999998543 222 123332222 12235666777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000921 1137 AAHCPIREILEKEKKERALA 1156 (1223)
Q Consensus 1137 Aa~~aireilek~kk~~~~~ 1156 (1223)
|..+.+.+.+++.....+..
T Consensus 629 aGVRnLqk~iekI~Rk~Al~ 648 (906)
T KOG2004|consen 629 AGVRNLQKQIEKICRKVALK 648 (906)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 77777766666655544433
No 62
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.5e-11 Score=145.58 Aligned_cols=161 Identities=19% Similarity=0.245 Sum_probs=112.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
+.+|+||.|.+++++.|+..+.. ...+.++|||||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 46899999999999999887654 224468999999999999999999999865
Q ss_pred ----------ceeEeecccccchhhhc---c---c--ccCC-------CChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1011 ----------NFINISMSSITSKVDSM---L---G--RREN-------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1011 ----------pfI~Vs~seL~skIDsI---~---g--~R~s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
.++.++++.-. .+|.+ . . .... ...+.......+.|+..|+..+ ..+++|
T Consensus 77 c~~i~~g~~~dv~el~aa~~~-gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~----~~vv~I 151 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAASNR-GIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP----SHVVFV 151 (472)
T ss_pred HHHHhcCCCCccEEEeCcccC-CHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC----CcEEEE
Confidence 46666664211 12211 0 0 0000 0112223345567777777632 456666
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccC
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1124 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeG 1124 (1223)
++|+.+..+.+++++|| ..+.|..++.++...+++..+...++. ++..++.|++.+.|
T Consensus 152 lattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 152 LATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred EEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 67777889999999999 689999999999999999988765543 34457788887765
No 63
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.34 E-value=1.9e-11 Score=140.42 Aligned_cols=158 Identities=25% Similarity=0.456 Sum_probs=106.0
Q ss_pred CCcccccCcHHHHHH---HHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc-
Q 000921 946 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT- 1021 (1223)
Q Consensus 946 vtfdDIgGle~vk~~---L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~- 1021 (1223)
.++++++|++++... |+.+|.. + ...+++||||||||||+||+.||...+.+|..+++-.--
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~----------~----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gv 86 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA----------G----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGV 86 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc----------C----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccH
Confidence 578899999888744 4444432 2 236899999999999999999999999999999885321
Q ss_pred ----chhhhc-----ccccCC--CChhHHHHHHHHH-HHHHhccCCCCCCccEEEEeec--CCCCCCCHHHHcccCceee
Q 000921 1022 ----SKVDSM-----LGRREN--PGEHEAMRKMKNE-FMVNWDGLRTKDKERVLVLAAT--NRPFDLDEAVVRRLPRRLM 1087 (1223)
Q Consensus 1022 ----skIDsI-----~g~R~s--~~e~e~~~rIl~~-LL~~LDgl~~k~~~rVLVIATT--Nrp~~LD~ALlRRFd~~I~ 1087 (1223)
..++.- .|++.- -.+-..+++..+. ||-.| +++.|++|||| |..+.|.+||++|. ++++
T Consensus 87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v------E~G~iilIGATTENPsF~ln~ALlSR~-~vf~ 159 (436)
T COG2256 87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV------ENGTIILIGATTENPSFELNPALLSRA-RVFE 159 (436)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh------cCCeEEEEeccCCCCCeeecHHHhhhh-heee
Confidence 112211 111100 0111222333333 44344 34678888877 88899999999998 7899
Q ss_pred ecCCCHHHHHHHHHHHHhh--cccC------CcccHHHHHHHccC
Q 000921 1088 VNLPDAPNREKIIRVILAK--EELA------SDVDLEGIANMADG 1124 (1223)
Q Consensus 1088 VplPd~eeR~~ILr~~L~k--~~l~------~dvDL~~LA~~TeG 1124 (1223)
+...+.++..++++..+.. .++. ++.-++.|+..++|
T Consensus 160 lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 160 LKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred eecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 9999999999999884432 2232 23346777777776
No 64
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.34 E-value=6.4e-12 Score=158.04 Aligned_cols=159 Identities=22% Similarity=0.339 Sum_probs=108.4
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceeEe
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el----------g~pfI~V 1015 (1223)
-.++++.|.++..+.+.+.+.. ....++||+||||||||++|+++|..+ +..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3567899999988887766532 112589999999999999999999987 7778888
Q ss_pred ecccccch------------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1016 SMSSITSK------------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1016 s~seL~sk------------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
++..+... |+.|++.+...+.... +.+.|+..|. ++.+.+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~---~~~~L~~~l~------~g~i~~I 315 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD---ASNLLKPALS------SGKLRCI 315 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH---HHHHHHHHHh------CCCeEEE
Confidence 87655421 3344443322111111 1222222222 3578999
Q ss_pred eecCC-----CCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHccCCcHH
Q 000921 1066 AATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSGS 1128 (1223)
Q Consensus 1066 ATTNr-----p~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~----l-~~dvDL~~LA~~TeGySGa 1128 (1223)
++||. ...+|+++.|||. .|+|+.|+.+++.+||+.+..... + ..+..+..++.++..|-+.
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~ 387 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIND 387 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccc
Confidence 99986 3568999999996 799999999999999998776521 1 1344466667766666543
No 65
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=2.5e-11 Score=144.52 Aligned_cols=174 Identities=18% Similarity=0.206 Sum_probs=122.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p------------- 1011 (1223)
..+|+||+|.+.+...|+..+.. .+.+..+||+||||||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 46899999999999999888754 1234679999999999999999999998762
Q ss_pred -----------eeEeeccccc--ch----hhhcccc-cCC-------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1012 -----------FINISMSSIT--SK----VDSMLGR-REN-------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1012 -----------fI~Vs~seL~--sk----IDsI~g~-R~s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
|+.+++..-. +. ++.+.-. ... ...+.......+.||..|+.- ...+++|+
T Consensus 81 C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP----p~~viFIL 156 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP----PAHIVFIL 156 (484)
T ss_pred HHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC----CCceEEEe
Confidence 4555543211 11 1111100 000 012233345677888888663 25688888
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1137 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~A 1137 (1223)
+|+.++.|.+++++|+ ..+.|..++.++-.+.++.++.+.++. .+..+..||+.++| +.+|..+++..+
T Consensus 157 aTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~ 226 (484)
T PRK14956 157 ATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQA 226 (484)
T ss_pred ecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHH
Confidence 8888999999999999 678898888888889999888876654 44557888888887 455555555443
No 66
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=1.9e-11 Score=148.87 Aligned_cols=174 Identities=21% Similarity=0.230 Sum_probs=124.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|+||+|.+.+++.|+..+.. .+.+..+||+||+|||||++|+.+|+.+.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 46899999999999999998864 233478999999999999999999999976
Q ss_pred ---------------ceeEeeccccc--ch----hhhcccccCC--------CChhHHHHHHHHHHHHHhccCCCCCCcc
Q 000921 1011 ---------------NFINISMSSIT--SK----VDSMLGRREN--------PGEHEAMRKMKNEFMVNWDGLRTKDKER 1061 (1223)
Q Consensus 1011 ---------------pfI~Vs~seL~--sk----IDsI~g~R~s--------~~e~e~~~rIl~~LL~~LDgl~~k~~~r 1061 (1223)
.++.++..+-. +. ++.+.-.... ..-+.......|.||..|+.- ..+
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP----P~~ 154 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP----PEH 154 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC----CCC
Confidence 34555543211 11 2211100000 012223345677888888763 256
Q ss_pred EEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCC-cccHHHHHHHccCCcHHHHHHHHHHH
Q 000921 1062 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDLEGIANMADGYSGSDLKNLCVTA 1137 (1223)
Q Consensus 1062 VLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~-dvDL~~LA~~TeGySGaDL~~L~~~A 1137 (1223)
+++|.+||.++.|.+.+++|+ ..+.|..++.++..+.|+.++.++++.- +..+..|++.++| +.+|..+++..+
T Consensus 155 v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~RdALsLLdQa 229 (700)
T PRK12323 155 VKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SMRDALSLTDQA 229 (700)
T ss_pred ceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 788888999999999999999 8899999999999999998887766543 3346788888887 556666666553
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=99.30 E-value=3e-11 Score=145.40 Aligned_cols=173 Identities=27% Similarity=0.379 Sum_probs=120.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch-
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK- 1023 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk- 1023 (1223)
+.+|++|.|.+++++.|+.++.... + ..+++.+|||||||||||++|+++|++++++++.+++++....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~ 79 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTAD 79 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHH
Confidence 4689999999999999999886522 2 1246899999999999999999999999999999988764321
Q ss_pred -hh----------hccc-ccC------CCCh-hHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCH-HHHcccC
Q 000921 1024 -VD----------SMLG-RRE------NPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLP 1083 (1223)
Q Consensus 1024 -ID----------sI~g-~R~------s~~e-~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~-ALlRRFd 1083 (1223)
+. .+++ .+. -..- ........+.|+..++. .+..||++||.+..+.. .+++|+
T Consensus 80 ~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~------~~~~iIli~n~~~~~~~k~Lrsr~- 152 (482)
T PRK04195 80 VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK------AKQPIILTANDPYDPSLRELRNAC- 152 (482)
T ss_pred HHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc------CCCCEEEeccCccccchhhHhccc-
Confidence 10 1111 000 0000 00011234555555553 22356678888888887 565566
Q ss_pred ceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1084 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1084 ~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
..|.|+.|+..++..+|+.++...++. ++..++.|++.+.| ||+.+++...
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq 204 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQ 204 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 789999999999999999999876653 34457888887755 7776665543
No 68
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=3e-11 Score=148.71 Aligned_cols=175 Identities=19% Similarity=0.198 Sum_probs=124.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|++|+|.+.+++.|+..+.. .+.+..+|||||+|||||++|+++|+.+++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 46899999999999999988753 223468899999999999999999999865
Q ss_pred ----------ceeEeecccccc------hhhhcccc-cCC-------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1011 ----------NFINISMSSITS------KVDSMLGR-REN-------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1011 ----------pfI~Vs~seL~s------kIDsI~g~-R~s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
.|++++..+-.+ .++.+... ... ..-+.......|.||..|+... .++.+|+
T Consensus 79 Cr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP----~~v~FIL 154 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP----PHVKFIL 154 (830)
T ss_pred HHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC----CCeEEEE
Confidence 355555542111 12211100 000 0112222345677888877643 4688888
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
+||.++.|.+.|++|| ..|.|..++.++..++|+.++.++++. ++..+..|++.++|- .+|..+++..+.
T Consensus 155 aTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-mRdALsLLdQAi 225 (830)
T PRK07003 155 ATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-MRDALSLTDQAI 225 (830)
T ss_pred EECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 9999999999999999 789999999999999999999887654 445578888999884 455556655444
No 69
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=9.8e-11 Score=136.26 Aligned_cols=175 Identities=21% Similarity=0.263 Sum_probs=119.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
+.+|++|.|.+.+++.|+..+.. .+.+..+||+||||||||++|+++|+++.+
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 36899999999999999887754 123468999999999999999999999863
Q ss_pred ----------ceeEeecccc--cchhhhcccc----cCCC--------ChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1011 ----------NFINISMSSI--TSKVDSMLGR----RENP--------GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1011 ----------pfI~Vs~seL--~skIDsI~g~----R~s~--------~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
.++.+++..- .+.+..+... .... ..+.......+.|+..++..+ ..+.+|.
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~----~~~~fIl 154 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP----QHIKFIL 154 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC----CCeEEEE
Confidence 2344443320 1112121110 0000 011122234567777777632 4566677
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
+|+.++.+.+.+++|+ ..+.|+.|+.++..++++..+.+.+.. ++..+..++..+.| +.+++.+++..++
T Consensus 155 ~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 155 ATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred EcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7778888999999999 789999999999999999988876543 44557788888876 5666666665543
No 70
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.27 E-value=8.6e-11 Score=129.04 Aligned_cols=172 Identities=26% Similarity=0.356 Sum_probs=126.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccccc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~ 1021 (1223)
.+.++++.|++.+++.|.+.... |..+ .|...+||||++|||||++++++..+. |+.+|.|...+|.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~G---~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQG---LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHcC---CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 57899999999999999877654 4443 377999999999999999999999977 7889999887765
Q ss_pred ch-----------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCH--------
Q 000921 1022 SK-----------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-------- 1076 (1223)
Q Consensus 1022 sk-----------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~-------- 1076 (1223)
+- +|.|. +..++ .-...|...|||--...+.+|+|.||+|+.+.+.+
T Consensus 93 ~l~~l~~~l~~~~~kFIlf~DDLs---Fe~~d-----~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~ 164 (249)
T PF05673_consen 93 DLPELLDLLRDRPYKFILFCDDLS---FEEGD-----TEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDI 164 (249)
T ss_pred cHHHHHHHHhcCCCCEEEEecCCC---CCCCc-----HHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCC
Confidence 43 44442 11111 12356777888876667789999999998776544
Q ss_pred ---------------HHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCc-ccHHHH----HHHccCCcHHHHHHHH
Q 000921 1077 ---------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDLEGI----ANMADGYSGSDLKNLC 1134 (1223)
Q Consensus 1077 ---------------ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~d-vDL~~L----A~~TeGySGaDL~~L~ 1134 (1223)
+|..||...|.|..|+.++-.+|++.++.+.++.-+ ..+..- |..-.|.||+--++.+
T Consensus 165 ~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~ 242 (249)
T PF05673_consen 165 QDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFI 242 (249)
T ss_pred CccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344499999999999999999999999988766533 233222 2333467776444443
No 71
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=8.2e-11 Score=143.68 Aligned_cols=174 Identities=25% Similarity=0.271 Sum_probs=124.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|++|+|.+.+++.|...+.. .+.+.++||+||||||||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 46899999999999999988753 233578999999999999999999999865
Q ss_pred ----------ceeEeecccccchhhhc---ccc------cCC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1011 ----------NFINISMSSITSKVDSM---LGR------REN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1011 ----------pfI~Vs~seL~skIDsI---~g~------R~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
.++.+++++-. ++|.+ ... .+. ...+.......+.|+..|+..+ ..+.+|
T Consensus 78 C~~I~~g~hpDviEIDAAs~~-~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP----~~v~FI 152 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASRT-KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP----EHVKFL 152 (702)
T ss_pred HHHHhcCCCCceEEecccccC-CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC----CCcEEE
Confidence 45566654321 12221 100 000 0112222356677888887643 456777
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
++|+.+..+.+.+++|+ ..+.|..++.++..+.++.++.+.++. .+..+..||+.+.| +.+++.+++..+.
T Consensus 153 LaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQaI 224 (702)
T PRK14960 153 FATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQAI 224 (702)
T ss_pred EEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 77788888999999999 789999999999999999999887654 44457888888876 6666666665544
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.1e-10 Score=140.17 Aligned_cols=176 Identities=21% Similarity=0.198 Sum_probs=126.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--------------- 1009 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg--------------- 1009 (1223)
..+|+||+|.+.+++.|+..+.. .+.+.++||+||||+|||++|+.+|+.+.
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 47899999999999999877654 23457999999999999999999999763
Q ss_pred ---------CceeEeecccccch------hhhcccccCC--------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1010 ---------ANFINISMSSITSK------VDSMLGRREN--------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1010 ---------~pfI~Vs~seL~sk------IDsI~g~R~s--------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
..++.+++++-.+. ++.+.-.... ...+.......+.|+..|+..+ ..+.+|.
T Consensus 76 C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp----~~v~fIl 151 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA----PHVKFIL 151 (491)
T ss_pred HHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC----CCeEEEE
Confidence 34567776542211 2221100000 0112222346678888888743 4566777
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1139 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa~ 1139 (1223)
+|+.++.+.+.+++|+ ..+.|..++.++....++.++.+.++. ++..+..|++.++| +.+++.+++..+..
T Consensus 152 atte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdqli~ 223 (491)
T PRK14964 152 ATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQAAI 223 (491)
T ss_pred EeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 7788888999999999 779999999999999999999887654 44557888988876 66777777766653
No 73
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.3e-10 Score=140.52 Aligned_cols=175 Identities=17% Similarity=0.185 Sum_probs=124.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p------------- 1011 (1223)
..+|+||+|.+.+++.|+..+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 46899999999999999988854 2234689999999999999999999999653
Q ss_pred -----------eeEeecccccc--h----hhhcc--cccCC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1012 -----------FINISMSSITS--K----VDSML--GRREN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1012 -----------fI~Vs~seL~s--k----IDsI~--g~R~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
++.+++++-.. . ++.+. +..+. ..-+.......+.|+..|+..+ ..+.+|.
T Consensus 79 C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp----~~~~fIl 154 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP----SHVKFIL 154 (509)
T ss_pred HHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC----CCeEEEE
Confidence 56666543111 0 22211 10110 0112222346678888888753 4466677
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
+|+.++.+.+.+++|+ ..++|..++..+-...++.++.+.++. .+..+..|++.+.| +.+++.+++..+.
T Consensus 155 attd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al~lLdq~i 225 (509)
T PRK14958 155 ATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDALSLLDQSI 225 (509)
T ss_pred EECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHH
Confidence 7778888988999998 778899889988888888888877654 34457888888876 6677777776554
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=1.5e-10 Score=139.66 Aligned_cols=176 Identities=20% Similarity=0.245 Sum_probs=122.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p------------- 1011 (1223)
..+|+|++|.+.+.+.|+..+.. .+.+.++||+||||||||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 46899999999999999886643 2335789999999999999999999998652
Q ss_pred ---------------eeEeeccccc--chhhhcccc-----cCC-------CChhHHHHHHHHHHHHHhccCCCCCCccE
Q 000921 1012 ---------------FINISMSSIT--SKVDSMLGR-----REN-------PGEHEAMRKMKNEFMVNWDGLRTKDKERV 1062 (1223)
Q Consensus 1012 ---------------fI~Vs~seL~--skIDsI~g~-----R~s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rV 1062 (1223)
++.+++.+-. +.|..++.. ... ...+.......+.|+..|+.. ...+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep----p~~~ 159 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP----PPHI 159 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc----CCCE
Confidence 3333332111 011111100 000 011222234566777777753 2456
Q ss_pred EEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHHH
Q 000921 1063 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1139 (1223)
Q Consensus 1063 LVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa~ 1139 (1223)
++|++|+.++.+.+++++|+ ..++|..++.++...+++..+.+.++. ++..+..|++.++| +.+++.+++..++.
T Consensus 160 vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~ 235 (507)
T PRK06645 160 IFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAAS 235 (507)
T ss_pred EEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 77777788889999999999 679999999999999999999887654 34457889999887 67777777776643
No 75
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=7.6e-11 Score=142.82 Aligned_cols=226 Identities=19% Similarity=0.270 Sum_probs=143.4
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch------
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK------ 1023 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk------ 1023 (1223)
|-.|++++|+.|.|++.-..... ++ ...-++|+||||+|||+|++.||..++..|++++..-+.+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~------~~--kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK------KL--KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc------cC--CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 66899999999999987622221 11 11357899999999999999999999999999988665543
Q ss_pred ------------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCC-----------CCccE
Q 000921 1024 ------------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----------DKERV 1062 (1223)
Q Consensus 1024 ------------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k-----------~~~rV 1062 (1223)
||.|...... +.. ..||..||--... +-..|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rG--DPa------SALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRG--DPA------SALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCC--ChH------HHHHhhcCHhhcCchhhccccCccchhhe
Confidence 5555433221 111 2344444421110 22469
Q ss_pred EEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhc-----ccC-CcccHHHHHHHccCCcHHH----HHH
Q 000921 1063 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-----ELA-SDVDLEGIANMADGYSGSD----LKN 1132 (1223)
Q Consensus 1063 LVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~-----~l~-~dvDL~~LA~~TeGySGaD----L~~ 1132 (1223)
++|+|+|..+.++..|+.|. .+|++.-.+.++..+|.+.||-.. ++. .++. |+-.- |+.
T Consensus 468 mFiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~----------i~d~ai~~iI~~ 536 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELT----------ITDEAIKDIIRY 536 (782)
T ss_pred EEEeecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCcccee----------ecHHHHHHHHHH
Confidence 99999999999999999999 789999999999999999997432 222 1121 22222 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC-CCCCHHHHHHHHHhcCccc--ccccc--ccccchhHhhh
Q 000921 1133 LCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDV-RPLKMDDFKYAHEQVCASV--SSEST--NMNELLQWNEL 1207 (1223)
Q Consensus 1133 L~~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~-rpLT~eDF~~ALe~v~PS~--s~e~~--~~~p~v~WnDI 1207 (1223)
-.++|..+.+.|.+.+.......+...+. ... ..++-.++.+-|-.-.-.+ ..+.. -...-..|+.+
T Consensus 537 YTREAGVR~LeR~i~ki~RK~~~~i~~~~--------~k~~~~i~~~~l~~yLG~~~f~~~~~~~~~~vGvVtGLAWT~v 608 (782)
T COG0466 537 YTREAGVRNLEREIAKICRKAAKKILLKK--------EKSIVKIDEKNLKKYLGVPVFRYGKAEEEDQVGVVTGLAWTEV 608 (782)
T ss_pred HhHhhhhhHHHHHHHHHHHHHHHHHHhcC--------cccceeeCHHHHHHHhCCcccCccccccCCCCeeEeeeeeecC
Confidence 44667777777666665544333332211 111 2466666666665322222 11111 12345789999
Q ss_pred cCC
Q 000921 1208 YGE 1210 (1223)
Q Consensus 1208 GGl 1210 (1223)
||.
T Consensus 609 GGd 611 (782)
T COG0466 609 GGD 611 (782)
T ss_pred Cce
Confidence 995
No 76
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.24 E-value=2e-10 Score=127.26 Aligned_cols=162 Identities=23% Similarity=0.304 Sum_probs=121.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch-
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK- 1023 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk- 1023 (1223)
..+|+|.+|.+++|+.|+-+|.....+ ....-++|||||||.|||+||.-||+|+|.++-..+++.+...
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g 92 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG 92 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh
Confidence 357899999999999999888763332 2344789999999999999999999999999998888766543
Q ss_pred ----------------hhhcccccCCCChhHHHHHHHHH-HHHHhccCCC--------C------CCccEEEEeecCCCC
Q 000921 1024 ----------------VDSMLGRRENPGEHEAMRKMKNE-FMVNWDGLRT--------K------DKERVLVLAATNRPF 1072 (1223)
Q Consensus 1024 ----------------IDsI~g~R~s~~e~e~~~rIl~~-LL~~LDgl~~--------k------~~~rVLVIATTNrp~ 1072 (1223)
||.|- +++..+.+ |.-.|+.+.- . +-.++-+|+||.+..
T Consensus 93 DlaaiLt~Le~~DVLFIDEIH----------rl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G 162 (332)
T COG2255 93 DLAAILTNLEEGDVLFIDEIH----------RLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG 162 (332)
T ss_pred hHHHHHhcCCcCCeEEEehhh----------hcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc
Confidence 34332 11122222 2233433211 0 123578999999999
Q ss_pred CCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCC
Q 000921 1073 DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1125 (1223)
Q Consensus 1073 ~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGy 1125 (1223)
.|...|+.||.....+...+.++..+|+......+++. .+....++|+++.|.
T Consensus 163 ~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 163 MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT 216 (332)
T ss_pred cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC
Confidence 99999999999999999999999999999988766554 334478899998873
No 77
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=1.3e-10 Score=136.73 Aligned_cols=176 Identities=16% Similarity=0.228 Sum_probs=114.5
Q ss_pred CcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------
Q 000921 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------- 1011 (1223)
Q Consensus 947 tfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p--------------- 1011 (1223)
.|++|+|.+.+++.|+..+..+..++..+ + .+.+.++|||||||+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58899999999999999998755433332 2 2245899999999999999999999987543
Q ss_pred --------eeEeecccccchhhh---ccc---cc---CCC-----ChhH-HHHHHHHHHHHHhccCCCCCCccEEEEeec
Q 000921 1012 --------FINISMSSITSKVDS---MLG---RR---ENP-----GEHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1068 (1223)
Q Consensus 1012 --------fI~Vs~seL~skIDs---I~g---~R---~s~-----~e~e-~~~rIl~~LL~~LDgl~~k~~~rVLVIATT 1068 (1223)
++.+.+....-+||. +.. .. ... .+-+ ......+.||..|+.-+ ...++|+ +|
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~---~~~~fIL-~a 154 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP---PRTVWLL-CA 154 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC---CCCeEEE-EE
Confidence 222322211111222 111 00 000 0111 12345577888887642 1344444 45
Q ss_pred CCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHH
Q 000921 1069 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCV 1135 (1223)
Q Consensus 1069 Nrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~ 1135 (1223)
+.++.|.+++++|+ ..+.|+.|+.++..++|... .++ .......++..++|..+..+.-+..
T Consensus 155 ~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~---~~~-~~~~a~~la~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 155 PSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRR---DGV-DPETARRAARASQGHIGRARRLATD 216 (394)
T ss_pred CChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHh---cCC-CHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 45899999999999 79999999999877777632 222 2345678899999988876655443
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=1.7e-10 Score=142.09 Aligned_cols=174 Identities=25% Similarity=0.293 Sum_probs=123.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|++|+|.+.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+.+
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 36899999999999999988754 123467899999999999999999999866
Q ss_pred ----------ceeEeeccccc--ch----hhhcccc--cCC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1011 ----------NFINISMSSIT--SK----VDSMLGR--REN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1011 ----------pfI~Vs~seL~--sk----IDsI~g~--R~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
.|+.+++.+-. +. ++.+.-. .+. ..-+.......|.||..|+.-+ ..+.+|.
T Consensus 79 C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp----~~v~FIL 154 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP----EHVKFLL 154 (647)
T ss_pred HHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC----CCeEEEE
Confidence 24555554211 11 2221100 000 0122233457788888888743 4567777
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1137 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~A 1137 (1223)
+|+.+..|.+.+++|+ ..+.|..++.++-...|+.++...++. .+..+..|+..++| +.++..+++..|
T Consensus 155 ~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~lldqa 224 (647)
T PRK07994 155 ATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALSLTDQA 224 (647)
T ss_pred ecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 7888899999999998 889999999999999999988776554 34457788888887 455555666544
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=1.5e-10 Score=144.99 Aligned_cols=174 Identities=25% Similarity=0.280 Sum_probs=121.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p------------- 1011 (1223)
..+|++|+|.+.+++.|+.++.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 37899999999999999888754 1234678999999999999999999999763
Q ss_pred -----------eeEeecccccchhhh-------cccc--cCC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1012 -----------FINISMSSITSKVDS-------MLGR--REN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1012 -----------fI~Vs~seL~skIDs-------I~g~--R~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
++.++..+- .++|. +... ++. ..-+.......+.||..|+..+ ..+.+|
T Consensus 79 C~~i~~g~~~DviEidAas~-~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP----~~vrFI 153 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASR-TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP----EHVKFL 153 (944)
T ss_pred HHHHhcCCCceEEEeccccc-cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC----CCeEEE
Confidence 123333311 11221 1100 000 0122233457778888887743 456667
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
++|+.+..|.+.|++|+ .++.|..++.++....|+.++...++. .+..+..|++.+.| +.+++.++|..|.
T Consensus 154 LaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 154 LATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred EECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 77888888999999998 789999999999999999888775543 33457888888887 4556666665433
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.21 E-value=2.7e-10 Score=130.64 Aligned_cols=175 Identities=26% Similarity=0.327 Sum_probs=118.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|++|.|.+.+++.|.+.+.. ...+..+|||||||+|||++|+++|+.+..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 47899999999999999987753 123468999999999999999999998742
Q ss_pred ----------ceeEeecccccc--h----hhhcccc-cCCC------Ch-hHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1011 ----------NFINISMSSITS--K----VDSMLGR-RENP------GE-HEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1011 ----------pfI~Vs~seL~s--k----IDsI~g~-R~s~------~e-~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
.++.+++..... . ++.+... .... .+ +.......+.|+..++..+ ..+++|+
T Consensus 77 c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~----~~~~lIl 152 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP----EHVVFIL 152 (355)
T ss_pred HHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc----cceeEEE
Confidence 355555542111 1 1211100 0000 01 1112235667777776632 4567777
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
+|+.++.+.+++++|+ ..++++.|+.++...+++.++.+.++. ++..+..|+..+.| ..+.+.+.++.+.
T Consensus 153 ~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl~ 223 (355)
T TIGR02397 153 ATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQLI 223 (355)
T ss_pred EeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 7888888889999999 578999999999999999998876643 33456777877765 4455555554443
No 81
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.20 E-value=5.6e-10 Score=120.06 Aligned_cols=170 Identities=18% Similarity=0.240 Sum_probs=107.8
Q ss_pred CCcccc--cCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccc
Q 000921 946 VTFDDI--GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1223)
Q Consensus 946 vtfdDI--gGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL 1020 (1223)
.+|+++ ++...+.+.+++++.. .....++|+||||||||++|++++.++ +.+++.+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG--------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 456665 3566777777776531 124689999999999999999999887 578888888776
Q ss_pred cch---------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCC---HHHHccc
Q 000921 1021 TSK---------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRL 1082 (1223)
Q Consensus 1021 ~sk---------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD---~ALlRRF 1082 (1223)
... ||.+-.-... . .....+...++..... +..+|+.++..+..++ +.+.+||
T Consensus 78 ~~~~~~~~~~~~~~~lLvIDdi~~l~~~---~----~~~~~L~~~l~~~~~~--~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 78 AQADPEVLEGLEQADLVCLDDVEAIAGQ---P----EWQEALFHLYNRVREA--GGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred HHhHHHHHhhcccCCEEEEeChhhhcCC---h----HHHHHHHHHHHHHHHc--CCeEEEECCCChHHCCcccHHHHHHH
Confidence 543 2332111000 0 1122333333332211 2344554444454432 7788887
Q ss_pred --CceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHHH
Q 000921 1083 --PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1139 (1223)
Q Consensus 1083 --d~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa~ 1139 (1223)
...+.+|.|+.+++..+++.+..+..+. ++.-+..|++.+. -+.++|.++++.+..
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDR 207 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 4789999999999999999887655443 3334677777644 477888888776553
No 82
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=3.9e-10 Score=138.01 Aligned_cols=173 Identities=26% Similarity=0.329 Sum_probs=121.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
+.+|++|.|.+.+++.|+..+.. .+.+..+|||||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 46899999999999999988754 223578999999999999999999999752
Q ss_pred ----------ceeEeecccccchhhh---cccc-----cCC-------CChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1011 ----------NFINISMSSITSKVDS---MLGR-----REN-------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1011 ----------pfI~Vs~seL~skIDs---I~g~-----R~s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
+++.++++.-. .+|. +... ... ..-+.......+.|+..|+..+ ..+++|
T Consensus 79 C~~i~~g~~~dv~eidaas~~-~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp----~~~ifI 153 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNN-GVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP----AHVIFI 153 (559)
T ss_pred HHHHhcCCCCCeEEeeccccC-CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC----CCeEEE
Confidence 45666554311 1221 1100 000 0011222345677888887643 346666
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHH
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1137 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~A 1137 (1223)
.+|+.++.|.+.+++|+ ..+.|+.|+..+....++.++.+.++. .+..+..||..+.| ..++..+++..+
T Consensus 154 latt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ldq~ 224 (559)
T PRK05563 154 LATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILDQA 224 (559)
T ss_pred EEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 66778899999999999 578899999999999999998877654 34457788888876 566666666544
No 83
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.18 E-value=7.2e-10 Score=129.24 Aligned_cols=205 Identities=19% Similarity=0.206 Sum_probs=127.0
Q ss_pred cccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceeEeecccccc
Q 000921 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS 1022 (1223)
Q Consensus 948 fdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el-----g~pfI~Vs~seL~s 1022 (1223)
.+.+.|-++..++|...+...+ .. . .+..++||||||||||++++.+++++ ++.++.+++....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~-------~~--~-~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPAL-------RG--S-RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh-------CC--C-CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3568888988888888774422 11 1 23579999999999999999999987 57888888864322
Q ss_pred h-------hhhcccc----cC------------------C------CChhHHH----HHHHHHHHHHhccCCCCCCccEE
Q 000921 1023 K-------VDSMLGR----RE------------------N------PGEHEAM----RKMKNEFMVNWDGLRTKDKERVL 1063 (1223)
Q Consensus 1023 k-------IDsI~g~----R~------------------s------~~e~e~~----~rIl~~LL~~LDgl~~k~~~rVL 1063 (1223)
. +..+.+. +. . +.-+... ...+..|+..++... +.++.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~---~~~v~ 175 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP---GARIG 175 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC---CCeEE
Confidence 1 1111110 00 0 0000000 124445555555432 23788
Q ss_pred EEeecCCCC---CCCHHHHcccC-ceeeecCCCHHHHHHHHHHHHhhc---ccCCcccHHHHHHHccCCcH--HHHHHHH
Q 000921 1064 VLAATNRPF---DLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGYSG--SDLKNLC 1134 (1223)
Q Consensus 1064 VIATTNrp~---~LD~ALlRRFd-~~I~VplPd~eeR~~ILr~~L~k~---~l~~dvDL~~LA~~TeGySG--aDL~~L~ 1134 (1223)
||+++|..+ .+++.+.+||. ..|.|++++.++..+|++..+... ....+..++.+++.+.+.+| +.+..+|
T Consensus 176 vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll 255 (394)
T PRK00411 176 VIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLL 255 (394)
T ss_pred EEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 899988764 47778888774 678999999999999999887542 11233446777877754322 2333556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccc
Q 000921 1135 VTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1191 (1223)
Q Consensus 1135 ~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~ 1191 (1223)
..|+..|..+ ....|+.+|+..|++++.++.
T Consensus 256 ~~a~~~a~~~--------------------------~~~~I~~~~v~~a~~~~~~~~ 286 (394)
T PRK00411 256 RRAGLIAERE--------------------------GSRKVTEEDVRKAYEKSEIVH 286 (394)
T ss_pred HHHHHHHHHc--------------------------CCCCcCHHHHHHHHHHHHHHH
Confidence 6555444332 224577888888877765444
No 84
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=3.7e-10 Score=136.58 Aligned_cols=173 Identities=23% Similarity=0.320 Sum_probs=117.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|+||.|.+.+++.|+.++.. .+.+..+|||||||||||++|+++|+.+.+
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 47899999999999999998864 223467899999999999999999999853
Q ss_pred ---------ceeEeecccccc--hhhhcc---------cccCC---CChhHHHHHHHHHHHHHhccCCCCCCccEEEEee
Q 000921 1011 ---------NFINISMSSITS--KVDSML---------GRREN---PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1067 (1223)
Q Consensus 1011 ---------pfI~Vs~seL~s--kIDsI~---------g~R~s---~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIAT 1067 (1223)
.++.++++.-.+ .|..+. +.+.- ...+.......+.|+..|+... ..+++|.+
T Consensus 77 ~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~----~~t~~Il~ 152 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP----EHVIFILA 152 (504)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC----CCEEEEEE
Confidence 145555442111 111110 00000 0011122345667777776632 45677777
Q ss_pred cCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 000921 1068 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1136 (1223)
Q Consensus 1068 TNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~ 1136 (1223)
|+.+..+.+.+.+|+ ..+.|..|+.++....++.++.+.++. ++..+..|++.+.| ..+++.++++.
T Consensus 153 t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Lek 220 (504)
T PRK14963 153 TTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESLLER 220 (504)
T ss_pred cCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 888999999999998 579999999999999999998877654 34446777777776 33344444443
No 85
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.17 E-value=4.1e-10 Score=133.18 Aligned_cols=171 Identities=24% Similarity=0.404 Sum_probs=111.6
Q ss_pred CCcccccCcHHHHHH---HHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccc
Q 000921 946 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 946 vtfdDIgGle~vk~~---L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~s 1022 (1223)
.+|+|++|.+++... |..++.. . ...++||+||||||||++|++||+.++.+|+.+++...-.
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~ 74 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------G-RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGV 74 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------C-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccH
Confidence 578899999999766 7776643 1 1248999999999999999999999999999998764311
Q ss_pred -h----hhhcccccC--C------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEeec--CCCCCCCHHHHcccCceee
Q 000921 1023 -K----VDSMLGRRE--N------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT--NRPFDLDEAVVRRLPRRLM 1087 (1223)
Q Consensus 1023 -k----IDsI~g~R~--s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATT--Nrp~~LD~ALlRRFd~~I~ 1087 (1223)
. ++.+..... . ..-+.......+.|+..++. ..+++|++| |....+++++++|| ..+.
T Consensus 75 ~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~------~~iilI~att~n~~~~l~~aL~SR~-~~~~ 147 (413)
T PRK13342 75 KDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED------GTITLIGATTENPSFEVNPALLSRA-QVFE 147 (413)
T ss_pred HHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc------CcEEEEEeCCCChhhhccHHHhccc-eeeE
Confidence 1 222211000 0 00111112233445555543 345666554 44568999999999 7899
Q ss_pred ecCCCHHHHHHHHHHHHhhcc--c--CCcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1088 VNLPDAPNREKIIRVILAKEE--L--ASDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1088 VplPd~eeR~~ILr~~L~k~~--l--~~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
++.++.++...+++..+.... + ..+..++.|++.+.| ..+.+.++++.++
T Consensus 148 ~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 148 LKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred eCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 999999999999999876531 1 123346677777755 3444555555443
No 86
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=2.3e-10 Score=140.89 Aligned_cols=176 Identities=22% Similarity=0.261 Sum_probs=123.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p------------- 1011 (1223)
..+|+||+|.+.+++.|+..+.. .+.+.++||+||+|||||++|+++|+.+.+.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 46899999999999999998764 2345789999999999999999999987543
Q ss_pred -----------eeEeecccccc--hhhhcccc------cCC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1012 -----------FINISMSSITS--KVDSMLGR------REN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1012 -----------fI~Vs~seL~s--kIDsI~g~------R~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
++.++...-.. .|..++.. ... ...+.......+.||..|+..+ ..+.+|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp----~~v~fIL 154 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP----EHVKFIL 154 (709)
T ss_pred HHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC----CCcEEEE
Confidence 23444322111 11111110 000 0011122345667888887643 4567778
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1139 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa~ 1139 (1223)
+|+.+..+.+.+++|+ ..+.|+.++.++-...|+.++.+.++. .+..+..|++.+.| +.+++.+++..+..
T Consensus 155 aTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLLDqaia 226 (709)
T PRK08691 155 ATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLLDQAIA 226 (709)
T ss_pred EeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 8888999999999998 778899999999999999999887654 33457888888876 67777777766543
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.16 E-value=1.2e-09 Score=118.50 Aligned_cols=189 Identities=17% Similarity=0.219 Sum_probs=115.3
Q ss_pred CCCccccc--CcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccc
Q 000921 945 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1223)
Q Consensus 945 ~vtfdDIg--Gle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~se 1019 (1223)
..+|+++. +-+.+...+++++.. ......++|+||||||||+||+++++++ +.+++.+++.+
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 36677744 445666666665431 1233689999999999999999999986 67888888876
Q ss_pred ccch-----------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCcc-EEEEeecCCC--CCCCHHHHccc--C
Q 000921 1020 ITSK-----------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNRP--FDLDEAVVRRL--P 1083 (1223)
Q Consensus 1020 L~sk-----------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~r-VLVIATTNrp--~~LD~ALlRRF--d 1083 (1223)
+... ||.+-.. . . .....|...++.... +.+ ++|++++..+ ..+.+.+++|| .
T Consensus 81 ~~~~~~~~~~~~~liiDdi~~l--~----~---~~~~~L~~~~~~~~~--~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~ 149 (227)
T PRK08903 81 PLLAFDFDPEAELYAVDDVERL--D----D---AQQIALFNLFNRVRA--HGQGALLVAGPAAPLALPLREDLRTRLGWG 149 (227)
T ss_pred hHHHHhhcccCCEEEEeChhhc--C----c---hHHHHHHHHHHHHHH--cCCcEEEEeCCCCHHhCCCCHHHHHHHhcC
Confidence 5432 3333110 0 0 111223333333221 133 3444444333 23567888787 4
Q ss_pred ceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 000921 1084 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1162 (1223)
Q Consensus 1084 ~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk~~~~~~~e~~~ 1162 (1223)
..+.+++|+..++..+++.+....++. ++.-++.|++..+| +.++|.++++.-...+..
T Consensus 150 ~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~------------------- 209 (227)
T PRK08903 150 LVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLE------------------- 209 (227)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHH-------------------
Confidence 789999999999999999887665443 33346777776554 566666666542221111
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHH
Q 000921 1163 SPPLYSSVDVRPLKMDDFKYAHE 1185 (1223)
Q Consensus 1163 ~~~~~~~~~~rpLT~eDF~~ALe 1185 (1223)
..++||+...++++.
T Consensus 210 --------~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 210 --------QKRPVTLPLLREMLA 224 (227)
T ss_pred --------hCCCCCHHHHHHHHh
Confidence 236788888888875
No 88
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=5.3e-10 Score=136.02 Aligned_cols=174 Identities=24% Similarity=0.284 Sum_probs=120.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p------------- 1011 (1223)
..+|+||.|.+.+++.|...+.. .+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 36899999999999999988754 2345789999999999999999999998652
Q ss_pred -----------eeEeecccccchhhhc---cc----ccC-C-------CChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1012 -----------FINISMSSITSKVDSM---LG----RRE-N-------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1012 -----------fI~Vs~seL~skIDsI---~g----~R~-s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
++.++++.-. .+|.+ .. ... . ...+.......+.||..|+..+ ..+++|
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~-~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp----~~~~fI 153 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNT-QVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP----EHVKFI 153 (527)
T ss_pred HHHHhcCCCCceeEeeccccC-CHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC----CCEEEE
Confidence 3444433211 12211 10 000 0 0112222345677888887743 456677
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
.+|+.++.+.+.+++|+ ..+.|..++.++-...+...+.+.++. .+..+..|++.+.| +.+++.+++..|.
T Consensus 154 L~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~lldqai 225 (527)
T PRK14969 154 LATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLLDQAI 225 (527)
T ss_pred EEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 77777888888899998 889999999999999888888776654 33446788888876 5566667766554
No 89
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.15 E-value=2.8e-10 Score=143.04 Aligned_cols=169 Identities=17% Similarity=0.264 Sum_probs=110.7
Q ss_pred CcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceeEee
Q 000921 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1223)
Q Consensus 947 tfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el----------g~pfI~Vs 1016 (1223)
.++.+.|-++..+.+.+++.. + ...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r---------~-----~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR---------R-----RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc---------c-----CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 455788888888888776643 1 12578999999999999999999875 44555554
Q ss_pred ccccc------------------------------chhhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1017 MSSIT------------------------------SKVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1017 ~seL~------------------------------skIDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
...++ +.|+.|++.+...+......+++..++ .+..+.||+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 43322 114445554432222222222333332 236799999
Q ss_pred ecCCCC-----CCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCccc-----HHHHHHHccC-----CcHHHHH
Q 000921 1067 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-----LEGIANMADG-----YSGSDLK 1131 (1223)
Q Consensus 1067 TTNrp~-----~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvD-----L~~LA~~TeG-----ySGaDL~ 1131 (1223)
||+.++ .+|++|.|||+ .|.|+.|+.+++..||+.+..+.....++. +..++.++.. +-+...-
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998754 68999999995 799999999999999999877654443443 3333333333 3445666
Q ss_pred HHHHHHHH
Q 000921 1132 NLCVTAAH 1139 (1223)
Q Consensus 1132 ~L~~~Aa~ 1139 (1223)
.++.+|+.
T Consensus 400 dlldea~a 407 (758)
T PRK11034 400 DVIDEAGA 407 (758)
T ss_pred HHHHHHHH
Confidence 77777764
No 90
>PRK06893 DNA replication initiation factor; Validated
Probab=99.15 E-value=3.3e-10 Score=123.91 Aligned_cols=142 Identities=17% Similarity=0.179 Sum_probs=87.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecc--ccc-----ch--------hhhcccccCCCChhHHHHHHHHH
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS--SIT-----SK--------VDSMLGRRENPGEHEAMRKMKNE 1046 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~s--eL~-----sk--------IDsI~g~R~s~~e~e~~~rIl~~ 1046 (1223)
..++||||||||||+|++|+|+++ +.....++.. +.. .. ||++...... .. ....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~---~~----~~~~ 112 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGN---EE----WELA 112 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCC---hH----HHHH
Confidence 368999999999999999999986 2333333332 111 11 4444321111 11 1112
Q ss_pred HHHHhccCCCCCCccEEEEeecCCCCCCC---HHHHccc--CceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHH
Q 000921 1047 FMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIAN 1120 (1223)
Q Consensus 1047 LL~~LDgl~~k~~~rVLVIATTNrp~~LD---~ALlRRF--d~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~ 1120 (1223)
|+..++.... .+..++|++++..|..++ +.+++|+ ...+.++.|+.++|.+|++......++. ++.-++.|++
T Consensus 113 l~~l~n~~~~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~ 191 (229)
T PRK06893 113 IFDLFNRIKE-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLK 191 (229)
T ss_pred HHHHHHHHHH-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3333333322 123456666677777665 7888866 4688999999999999999888765543 4445788888
Q ss_pred HccCCcHHHHHHHHH
Q 000921 1121 MADGYSGSDLKNLCV 1135 (1223)
Q Consensus 1121 ~TeGySGaDL~~L~~ 1135 (1223)
+.+| +.+.|.+++.
T Consensus 192 ~~~~-d~r~l~~~l~ 205 (229)
T PRK06893 192 RLDR-DMHTLFDALD 205 (229)
T ss_pred hccC-CHHHHHHHHH
Confidence 8875 3344444443
No 91
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.15 E-value=1.5e-09 Score=125.24 Aligned_cols=183 Identities=19% Similarity=0.209 Sum_probs=109.4
Q ss_pred ccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CceeEeeccc
Q 000921 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 1019 (1223)
Q Consensus 949 dDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg---------~pfI~Vs~se 1019 (1223)
+++.|-++.++.|...+...+ .+ ..+..++|+||||||||+++++++.++. +.++.+++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~-------~~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL-------RG---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH-------cC---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 478999999999988875422 11 1235799999999999999999998763 6788888865
Q ss_pred ccch-------hhhcc--cccCC-C--ChhHHHH----------------------------HHHHHHHHHhccCCCCCC
Q 000921 1020 ITSK-------VDSML--GRREN-P--GEHEAMR----------------------------KMKNEFMVNWDGLRTKDK 1059 (1223)
Q Consensus 1020 L~sk-------IDsI~--g~R~s-~--~e~e~~~----------------------------rIl~~LL~~LDgl~~k~~ 1059 (1223)
.... +..+. +.... . ...+... .++.+|+..++ .....+
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~-~~~~~~ 163 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARS-NGDLDN 163 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccc-ccCCCC
Confidence 4332 22221 10000 0 0000011 11122221100 011123
Q ss_pred ccEEEEeecCCCC---CCCHHHHcccC-ceeeecCCCHHHHHHHHHHHHhhc---ccCCcccHHHHHH---HccCCcHHH
Q 000921 1060 ERVLVLAATNRPF---DLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIAN---MADGYSGSD 1129 (1223)
Q Consensus 1060 ~rVLVIATTNrp~---~LD~ALlRRFd-~~I~VplPd~eeR~~ILr~~L~k~---~l~~dvDL~~LA~---~TeGySGaD 1129 (1223)
.++.+|+++|.++ .+++.+.+||. ..|.|++++.++..+|++..+... ..-.+..++.++. .+.|.. +.
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~-R~ 242 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDA-RK 242 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCH-HH
Confidence 5789999999886 47888888885 679999999999999999988631 1112222334443 344532 23
Q ss_pred HHHHHHHHHHHHHH
Q 000921 1130 LKNLCVTAAHCPIR 1143 (1223)
Q Consensus 1130 L~~L~~~Aa~~air 1143 (1223)
..++|+.|+..|..
T Consensus 243 al~~l~~a~~~a~~ 256 (365)
T TIGR02928 243 AIDLLRVAGEIAER 256 (365)
T ss_pred HHHHHHHHHHHHHH
Confidence 34466666655543
No 92
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.15 E-value=4.3e-10 Score=132.46 Aligned_cols=145 Identities=23% Similarity=0.345 Sum_probs=98.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceeEeecccccch------------------------hhhcccccCCCC
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK------------------------VDSMLGRRENPG 1035 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el-----g~pfI~Vs~seL~sk------------------------IDsI~g~R~s~~ 1035 (1223)
..++||||||+|||+|++++|+++ +..++.+++.+++.. ||++-.-...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~-- 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGK-- 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCC--
Confidence 579999999999999999999987 677888888765432 3333211110
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCC---CCHHHHcccCc--eeeecCCCHHHHHHHHHHHHhhcccC
Q 000921 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAKEELA 1110 (1223)
Q Consensus 1036 e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~---LD~ALlRRFd~--~I~VplPd~eeR~~ILr~~L~k~~l~ 1110 (1223)
+ ....+|+..++.+... .+.+||+++..|.. +++.+++||.. .+.++.|+.++|..|++..+...++.
T Consensus 215 --~---~~~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~ 287 (405)
T TIGR00362 215 --E---RTQEEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLE 287 (405)
T ss_pred --H---HHHHHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 0 1122344444433221 34466666666655 55788889964 78999999999999999999876543
Q ss_pred -CcccHHHHHHHccCCcHHHHHHHHHHHHH
Q 000921 1111 -SDVDLEGIANMADGYSGSDLKNLCVTAAH 1139 (1223)
Q Consensus 1111 -~dvDL~~LA~~TeGySGaDL~~L~~~Aa~ 1139 (1223)
++..++.||.+..+ +.++|..++.....
T Consensus 288 l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 288 LPDEVLEFIAKNIRS-NVRELEGALNRLLA 316 (405)
T ss_pred CCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 45557889988875 56777776665543
No 93
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.15 E-value=5e-10 Score=133.76 Aligned_cols=145 Identities=21% Similarity=0.330 Sum_probs=97.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceeEeecccccch------------------------hhhcccccCCCC
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK------------------------VDSMLGRRENPG 1035 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el-----g~pfI~Vs~seL~sk------------------------IDsI~g~R~s~~ 1035 (1223)
..++||||||||||+|++++|+++ +..++.+++.+++.. ||++-.-...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~-- 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK-- 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC--
Confidence 579999999999999999999998 566888888765432 2333111000
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCC---CCHHHHcccC--ceeeecCCCHHHHHHHHHHHHhhcccC
Q 000921 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA 1110 (1223)
Q Consensus 1036 e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~---LD~ALlRRFd--~~I~VplPd~eeR~~ILr~~L~k~~l~ 1110 (1223)
+ ....+|+..++.+... ++.+||+++..|.. +++.+++||. ..+.+..|+.++|..||+..+...++.
T Consensus 227 --~---~~~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~ 299 (450)
T PRK00149 227 --E---RTQEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGID 299 (450)
T ss_pred --H---HHHHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 0 1223344444443322 33466666666655 6789999996 478999999999999999998865443
Q ss_pred -CcccHHHHHHHccCCcHHHHHHHHHHHHH
Q 000921 1111 -SDVDLEGIANMADGYSGSDLKNLCVTAAH 1139 (1223)
Q Consensus 1111 -~dvDL~~LA~~TeGySGaDL~~L~~~Aa~ 1139 (1223)
++..++.||..+.| +.++|..++.....
T Consensus 300 l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 300 LPDEVLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred CCHHHHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 44458888888875 56666666655543
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=7.4e-10 Score=136.21 Aligned_cols=174 Identities=20% Similarity=0.235 Sum_probs=121.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|++|+|.+.+++.|+.++.. .+.+..+|||||+|||||++|+++|+.+.+
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 36899999999999999998764 223468899999999999999999999864
Q ss_pred ---------------ceeEeecccccchhhhc---ccc------cCC------CChhHHHHHHHHHHHHHhccCCCCCCc
Q 000921 1011 ---------------NFINISMSSITSKVDSM---LGR------REN------PGEHEAMRKMKNEFMVNWDGLRTKDKE 1060 (1223)
Q Consensus 1011 ---------------pfI~Vs~seL~skIDsI---~g~------R~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~ 1060 (1223)
.|+.++..+-. ++|.+ ... .+. ..-+.......|.||..|+..+ .
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~-~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP----~ 153 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNR-GVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP----E 153 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccccc-CHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC----C
Confidence 24455443211 12221 100 000 0112222345667777777632 4
Q ss_pred cEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1061 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1061 rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
.+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....|+.++.+.++. ++..+..|++.+.| +.+++.+++..+.
T Consensus 154 ~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~i 230 (618)
T PRK14951 154 YLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQAI 230 (618)
T ss_pred CeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 5666777777888888999999 889999999999999999988877654 33457888888887 6667767665443
No 95
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1e-09 Score=134.43 Aligned_cols=162 Identities=20% Similarity=0.275 Sum_probs=112.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p------------- 1011 (1223)
..+|+||+|.+.+++.|..++.. .+-+.++||+||||||||++|+.+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 47899999999999999988754 1223689999999999999999999999753
Q ss_pred -----------eeEeecccc--cchhhhc---c---cccCC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1012 -----------FINISMSSI--TSKVDSM---L---GRREN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1012 -----------fI~Vs~seL--~skIDsI---~---g~R~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
++.+++..- ++.+..| + +.... ...+.......+.|+..|+... ..+++|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~----~~~ifIL 154 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP----ARVTFVL 154 (624)
T ss_pred HHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC----CCEEEEE
Confidence 455554321 1111111 0 00000 0111222345677887777632 4577778
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccC
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1124 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeG 1124 (1223)
+|+.+..+.+.+++|+ ..|.|+.++.++...+|+.++.+.++. ++..++.|++.+.|
T Consensus 155 aTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 155 ATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred ecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888888888999998 578999999999999999888776542 44457788887775
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.13 E-value=1.1e-09 Score=124.55 Aligned_cols=169 Identities=22% Similarity=0.280 Sum_probs=108.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CceeEeeccc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg-----~pfI~Vs~se 1019 (1223)
+.+|++|.|.+.+++.|..++.. + . ..++|||||||||||++|+++|+++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~-----------~--~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS-----------P--N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC-----------C--C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 46789999999999999887643 1 1 13699999999999999999999983 3567777765
Q ss_pred ccch----------------------------hhhcc-------cccCCC------ChhHHHHHHHHHHHHHhccCCCCC
Q 000921 1020 ITSK----------------------------VDSML-------GRRENP------GEHEAMRKMKNEFMVNWDGLRTKD 1058 (1223)
Q Consensus 1020 L~sk----------------------------IDsI~-------g~R~s~------~e~e~~~rIl~~LL~~LDgl~~k~ 1058 (1223)
+... ++.+. +..... .-+.......+.|...++...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~--- 153 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS--- 153 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc---
Confidence 4311 11100 000000 000001122334444555432
Q ss_pred CccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 000921 1059 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1136 (1223)
Q Consensus 1059 ~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~ 1136 (1223)
....+|.+|+.+..+.+.+.+|+ ..+.++.|+.++...+++.++.+.++. ++..++.|+..+. +|++.++..
T Consensus 154 -~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~----gdlr~l~~~ 226 (337)
T PRK12402 154 -RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG----GDLRKAILT 226 (337)
T ss_pred -CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHH
Confidence 22334555656667778888898 678999999999999999998876654 4445777777764 455555443
No 97
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.13 E-value=5.2e-10 Score=126.81 Aligned_cols=144 Identities=18% Similarity=0.253 Sum_probs=99.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc---
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--- 1021 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~--- 1021 (1223)
+.+|+++.|.+++++.++..+.. ...+..+|||||||+|||++|+++|++.+.+++.+++++..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~ 83 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDF 83 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHH
Confidence 47899999999999999988752 12346677799999999999999999999999999887611
Q ss_pred --chhhhccccc---CCC-----ChhHH--HHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeec
Q 000921 1022 --SKVDSMLGRR---ENP-----GEHEA--MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 1089 (1223)
Q Consensus 1022 --skIDsI~g~R---~s~-----~e~e~--~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~Vp 1089 (1223)
+.+..+.... ... .+-+. .......|...++... .++.+|+|||.+..+.+++++|| ..+.++
T Consensus 84 i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~----~~~~~Ilt~n~~~~l~~~l~sR~-~~i~~~ 158 (316)
T PHA02544 84 VRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS----KNCSFIITANNKNGIIEPLRSRC-RVIDFG 158 (316)
T ss_pred HHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC----CCceEEEEcCChhhchHHHHhhc-eEEEeC
Confidence 0011111000 000 00000 1112233444455532 44678889999999999999999 578999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 000921 1090 LPDAPNREKIIRVILAK 1106 (1223)
Q Consensus 1090 lPd~eeR~~ILr~~L~k 1106 (1223)
.|+.+++..|++.++..
T Consensus 159 ~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 159 VPTKEEQIEMMKQMIVR 175 (316)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999887765443
No 98
>PLN03025 replication factor C subunit; Provisional
Probab=99.13 E-value=4e-10 Score=128.79 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=109.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CceeEeeccc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg-----~pfI~Vs~se 1019 (1223)
+.+|+|+.|.+++++.|+.++.. . . . .++|||||||||||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~--~-~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G--N-M-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C--C-C-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 46899999999999999887643 1 1 1 3699999999999999999999982 3466777765
Q ss_pred ccch------hhhccccc-----CC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHccc
Q 000921 1020 ITSK------VDSMLGRR-----EN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1082 (1223)
Q Consensus 1020 L~sk------IDsI~g~R-----~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRF 1082 (1223)
..+. +..+.... .. ..-+.......+.|+..|+... ....+|.+||.+..+.+++++|+
T Consensus 75 ~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~----~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 75 DRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS----NTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred cccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc----CCceEEEEeCCccccchhHHHhh
Confidence 3321 21111110 00 0011111223445555565432 23456667888888999999998
Q ss_pred CceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccC
Q 000921 1083 PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1124 (1223)
Q Consensus 1083 d~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeG 1124 (1223)
..+.|+.|+.++....++..+.+.++. ++..+..|+..+.|
T Consensus 151 -~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 151 -AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred -hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 689999999999999999998876654 44457777777765
No 99
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=7.2e-10 Score=134.76 Aligned_cols=174 Identities=22% Similarity=0.275 Sum_probs=117.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|++|+|.+.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 36899999999999999887754 123467999999999999999999998864
Q ss_pred ----------ceeEeecccccc--hhhhccc----ccC-C-------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1011 ----------NFINISMSSITS--KVDSMLG----RRE-N-------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1011 ----------pfI~Vs~seL~s--kIDsI~g----~R~-s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
.++.++...-.+ .+..+.. ... . ...+.......+.||..|+..+ ..+.+|+
T Consensus 79 C~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp----~~v~fIL 154 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP----EYVKFIL 154 (546)
T ss_pred HHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC----CCceEEE
Confidence 344454422111 1111110 000 0 0112222346677888888643 4456666
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1137 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~A 1137 (1223)
+|+.+..+.+.+++|+ ..++|..++.++-...++..+.+.++. .+..+..|+..+.| +.+++.+++..+
T Consensus 155 ~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~alnlLek~ 224 (546)
T PRK14957 155 ATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRDALSLLDQA 224 (546)
T ss_pred EECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 6666888888899999 889999999999998999888876654 34446778888865 455555555543
No 100
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.12 E-value=1e-09 Score=138.71 Aligned_cols=224 Identities=18% Similarity=0.267 Sum_probs=136.1
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch------
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK------ 1023 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk------ 1023 (1223)
++.|++++|+.|.+++....... ......++|+||||||||++++.||..++.+|+.++...+.+.
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~--------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN--------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc--------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 58999999999999887522211 1122469999999999999999999999999999887654332
Q ss_pred ---------------------------hhhc---ccccCCCChhHHHHHHHHHHHHHhccCC-----------CCCCccE
Q 000921 1024 ---------------------------VDSM---LGRRENPGEHEAMRKMKNEFMVNWDGLR-----------TKDKERV 1062 (1223)
Q Consensus 1024 ---------------------------IDsI---~g~R~s~~e~e~~~rIl~~LL~~LDgl~-----------~k~~~rV 1062 (1223)
+|.+ ..... ......|+..||.-. +-+-.+|
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~--------g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMR--------GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccC--------CCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 1211 11100 012345666666310 0122678
Q ss_pred EEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhc-----ccC-C--ccc---HHHHHHHc-cCCcHHHH
Q 000921 1063 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-----ELA-S--DVD---LEGIANMA-DGYSGSDL 1130 (1223)
Q Consensus 1063 LVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~-----~l~-~--dvD---L~~LA~~T-eGySGaDL 1130 (1223)
++|+|+|.. .|+++|++|| ..|.++.++.++..+|.+.++... .+. . .++ +..|++.+ ..+-.+.|
T Consensus 467 ~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~L 544 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSL 544 (784)
T ss_pred EEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHH
Confidence 999999987 5999999999 578999999999999999998521 111 1 112 34444322 23334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccc--ccc--ccccccchhHhh
Q 000921 1131 KNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV--SSE--STNMNELLQWNE 1206 (1223)
Q Consensus 1131 ~~L~~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~--s~e--~~~~~p~v~WnD 1206 (1223)
+.+++..+..++.+++. .. ......|+.+++.+.+-.-+-.. ... ..-...-..|+.
T Consensus 545 eR~I~~i~r~~l~~~~~------------~~-------~~~~v~v~~~~~~~~lg~~~~~~~~~~~~~~~G~~~gla~t~ 605 (784)
T PRK10787 545 EREISKLCRKAVKQLLL------------DK-------SLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTE 605 (784)
T ss_pred HHHHHHHHHHHHHHHHh------------cC-------CCceeeecHHHHHHHhCCCccccchhhcCCCceEEEEeEEeC
Confidence 55555544333332211 10 11234688888888776322111 111 111334478999
Q ss_pred hcCC
Q 000921 1207 LYGE 1210 (1223)
Q Consensus 1207 IGGl 1210 (1223)
.||.
T Consensus 606 ~gg~ 609 (784)
T PRK10787 606 VGGD 609 (784)
T ss_pred CCeE
Confidence 8884
No 101
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.11 E-value=2.7e-09 Score=117.23 Aligned_cols=168 Identities=11% Similarity=0.046 Sum_probs=99.2
Q ss_pred CCCccccc--CcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CceeEeeccc
Q 000921 945 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSS 1019 (1223)
Q Consensus 945 ~vtfdDIg--Gle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg---~pfI~Vs~se 1019 (1223)
..+|+++. +-..+...++..... . ....++||||||||||+|++++|+++. ..+..++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~----------~----~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ----------E----HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34677655 344555555554322 1 124799999999999999999998864 3334433332
Q ss_pred ccc-------h--------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCcc-EEEEeecCCCCC---CCHHHHc
Q 000921 1020 ITS-------K--------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNRPFD---LDEAVVR 1080 (1223)
Q Consensus 1020 L~s-------k--------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~r-VLVIATTNrp~~---LD~ALlR 1080 (1223)
... . ||++-.-... .. ....+..+++.+ .. +++ -+|+++++.|.. +.+.+++
T Consensus 84 ~~~~~~~~~~~~~~~dlliiDdi~~~~~~---~~-~~~~lf~l~n~~---~e--~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 84 RAWFVPEVLEGMEQLSLVCIDNIECIAGD---EL-WEMAIFDLYNRI---LE--SGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred HhhhhHHHHHHhhhCCEEEEeChhhhcCC---HH-HHHHHHHHHHHH---HH--cCCCeEEEeCCCChHHcCcccHHHHH
Confidence 111 1 3443211111 11 111122222221 11 122 355556666666 5789999
Q ss_pred ccC--ceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 000921 1081 RLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1136 (1223)
Q Consensus 1081 RFd--~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~ 1136 (1223)
||. ..+.+..|+.++|.+|++......++. ++.-++.|+++.+| +.+.+.+++..
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 996 788999999999999999866654443 44457888888875 45555555544
No 102
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=8.3e-10 Score=139.77 Aligned_cols=171 Identities=20% Similarity=0.183 Sum_probs=117.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|++|+|.+.+++.|+.++.. .+.+..+|||||+|||||++|+.||+.+.+
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 47899999999999999988754 223467999999999999999999999964
Q ss_pred ------------ceeEeecccccchhhhc-------c-cccCC-------CChhHHHHHHHHHHHHHhccCCCCCCccEE
Q 000921 1011 ------------NFINISMSSITSKVDSM-------L-GRREN-------PGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1063 (1223)
Q Consensus 1011 ------------pfI~Vs~seL~skIDsI-------~-g~R~s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVL 1063 (1223)
.|+.++..+.. .||.| . ..... ..-+.......|.||..|+... ..++
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~-~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP----~~~~ 152 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHG-GVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP----EHLK 152 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccC-CHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC----CCeE
Confidence 24455543321 12222 1 00000 0112233456677888888754 4567
Q ss_pred EEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHH
Q 000921 1064 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1135 (1223)
Q Consensus 1064 VIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~ 1135 (1223)
+|++|+.++.|-+.|++|+ ..+.|..++.++..++|+.++.+.++. .+..+..|+..+.| +.+++.++++
T Consensus 153 fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLE 223 (824)
T PRK07764 153 FIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLD 223 (824)
T ss_pred EEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 7777788888999999998 789999999999999999988876654 33345666777665 3444444443
No 103
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=8.7e-10 Score=134.55 Aligned_cols=173 Identities=20% Similarity=0.279 Sum_probs=118.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
+.+|++|.|.+.+++.|...+.. .+.+.++||+||||+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999887743 223478999999999999999999999843
Q ss_pred ----------ceeEeecccccc--hhhhccc----ccCCC--------ChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1011 ----------NFINISMSSITS--KVDSMLG----RRENP--------GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1011 ----------pfI~Vs~seL~s--kIDsI~g----~R~s~--------~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
.++.++++.... .|..+.. ..... ..+.......+.|+..|+..+ ..+++|+
T Consensus 79 Cr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp----~~tvfIL 154 (605)
T PRK05896 79 CESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP----KHVVFIF 154 (605)
T ss_pred HHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC----CcEEEEE
Confidence 344555433111 1111110 00000 011111234567888887643 4567777
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1136 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~ 1136 (1223)
+|+.+..|.+++++|+ ..+.|+.++..+....++..+.+.+.. ++..+..++.++.| +.+++.++++.
T Consensus 155 ~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLek 223 (605)
T PRK05896 155 ATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQ 223 (605)
T ss_pred ECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 7788899999999999 579999999999999999988776542 34457788888876 44555555554
No 104
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=1.9e-09 Score=132.05 Aligned_cols=173 Identities=20% Similarity=0.225 Sum_probs=120.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
+.+|+||.|.+.+++.|+..+.. .+.+..+|||||||+|||++|+++|+.+.+
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 46899999999999999988854 223468999999999999999999999864
Q ss_pred ----------ceeEeecccccchhhhc---c-----cccCCC-------ChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1011 ----------NFINISMSSITSKVDSM---L-----GRRENP-------GEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1011 ----------pfI~Vs~seL~skIDsI---~-----g~R~s~-------~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
+|+.+++..-. .+|.+ . ...... ..+.......+.|+..|+..+ ..+++|
T Consensus 79 C~~i~~~~~~dv~~idgas~~-~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp----~~~vfI 153 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNT-SVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP----PYIVFI 153 (563)
T ss_pred HHHHHcCCCCCeEEecCcccC-CHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC----CCEEEE
Confidence 24445443211 12211 1 010110 112223346677888887632 456677
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHH
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1137 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~A 1137 (1223)
++|+.++.|.+++++|+ ..+.|..++.++..++++..+.+.++. ++..+..||+.+.| +.+++.+++..+
T Consensus 154 ~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdkl 224 (563)
T PRK06647 154 FATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQV 224 (563)
T ss_pred EecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 77777889999999999 478999999999999999888776543 44557788888876 566666666544
No 105
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.09 E-value=1.5e-09 Score=123.05 Aligned_cols=203 Identities=23% Similarity=0.361 Sum_probs=122.8
Q ss_pred CCcccccCcHHHHHH---HHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---eeEeeccc
Q 000921 946 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSS 1019 (1223)
Q Consensus 946 vtfdDIgGle~vk~~---L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p---fI~Vs~se 1019 (1223)
.+++|..|.+++..+ |+.+|++ ....+++||||||||||+||+.||....-+ ||.+++..
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq--------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ--------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc--------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 466777777766554 3333322 123589999999999999999999998766 88877754
Q ss_pred ccch-hhhc---------ccccCCC---ChhHHHHHHHH-HHHHHhccCCCCCCccEEEEeec--CCCCCCCHHHHcccC
Q 000921 1020 ITSK-VDSM---------LGRRENP---GEHEAMRKMKN-EFMVNWDGLRTKDKERVLVLAAT--NRPFDLDEAVVRRLP 1083 (1223)
Q Consensus 1020 L~sk-IDsI---------~g~R~s~---~e~e~~~rIl~-~LL~~LDgl~~k~~~rVLVIATT--Nrp~~LD~ALlRRFd 1083 (1223)
-... +-.+ +.+|..- .+-..+++..+ .||-. -+++.|++|++| |..+.|..+|++|+
T Consensus 201 a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~------VE~G~I~lIGATTENPSFqln~aLlSRC- 273 (554)
T KOG2028|consen 201 AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPH------VENGDITLIGATTENPSFQLNAALLSRC- 273 (554)
T ss_pred cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccce------eccCceEEEecccCCCccchhHHHHhcc-
Confidence 2211 1111 1111110 11112222222 22222 234668888877 77889999999999
Q ss_pred ceeeecCCCHHHHHHHHHHHHhhc--------ccC------CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1084 RRLMVNLPDAPNREKIIRVILAKE--------ELA------SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1084 ~~I~VplPd~eeR~~ILr~~L~k~--------~l~------~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~ 1149 (1223)
+++.+...+.++-..||...+.-. ++. .+--++.||..++|-+..-|..|-..+.+...|+
T Consensus 274 ~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~----- 348 (554)
T KOG2028|consen 274 RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRS----- 348 (554)
T ss_pred ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhc-----
Confidence 677788888888888888854311 111 1223788999999876666554433222222221
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCcccc
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1192 (1223)
Q Consensus 1150 kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s 1192 (1223)
+..+.-+|+.+|.+++++.-..-+-
T Consensus 349 ------------------g~~~~~~lSidDvke~lq~s~~~YD 373 (554)
T KOG2028|consen 349 ------------------GQSSRVLLSIDDVKEGLQRSHILYD 373 (554)
T ss_pred ------------------CCcccceecHHHHHHHHhhccceec
Confidence 1124457899999998886554443
No 106
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.09 E-value=1.2e-09 Score=129.33 Aligned_cols=194 Identities=21% Similarity=0.273 Sum_probs=120.3
Q ss_pred ccCcHHHHHHHHHHHHccccChHhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch-----
Q 000921 951 IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----- 1023 (1223)
Q Consensus 951 IgGle~vk~~L~e~V~lpL~~pelf~k--~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk----- 1023 (1223)
|+|++++++.|...+..+.++...... .....+..+|||+||||||||++|++||..++.||+.+++..+...
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 799999999998777544333211100 0112245789999999999999999999999999999988765421
Q ss_pred -----------------------------hhhcccccCCCCh--hHHHHHHHHHHHHHhccCC----CCC-----CccEE
Q 000921 1024 -----------------------------VDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLR----TKD-----KERVL 1063 (1223)
Q Consensus 1024 -----------------------------IDsI~g~R~s~~e--~e~~~rIl~~LL~~LDgl~----~k~-----~~rVL 1063 (1223)
||.+...+.+... +.....+.+.||..|++-. +.+ ....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 3333322111100 0000136678888888641 111 12356
Q ss_pred EEeecCCCC----------------------------------------------------CCCHHHHcccCceeeecCC
Q 000921 1064 VLAATNRPF----------------------------------------------------DLDEAVVRRLPRRLMVNLP 1091 (1223)
Q Consensus 1064 VIATTNrp~----------------------------------------------------~LD~ALlRRFd~~I~VplP 1091 (1223)
+|.|+|-.+ -+.|+++.|++.++.|...
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 677766411 0356777899999999999
Q ss_pred CHHHHHHHHHH----HHhh-------cccC---CcccHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHH
Q 000921 1092 DAPNREKIIRV----ILAK-------EELA---SDVDLEGIANM--ADGYSGSDLKNLCVTAAHCPIRE 1144 (1223)
Q Consensus 1092 d~eeR~~ILr~----~L~k-------~~l~---~dvDL~~LA~~--TeGySGaDL~~L~~~Aa~~aire 1144 (1223)
+.++..+|+.. ++.+ .++. ++.-++.||+. ..++-.+-|+.+++......+.+
T Consensus 313 ~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 313 DEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 99999999973 3322 1111 22235667765 23555666777776666555544
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=1.2e-09 Score=135.46 Aligned_cols=173 Identities=23% Similarity=0.309 Sum_probs=117.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p------------- 1011 (1223)
+.+|++|.|.+.+++.|+..+.. .+.+.++|||||+|+|||++|+++|+.+.+.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 47899999999999999998854 1234789999999999999999999988542
Q ss_pred --------eeEeecccc--cchhhhc----cccc--CC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecC
Q 000921 1012 --------FINISMSSI--TSKVDSM----LGRR--EN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1069 (1223)
Q Consensus 1012 --------fI~Vs~seL--~skIDsI----~g~R--~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTN 1069 (1223)
++.+++..- .+.|..+ .-.. +. ...+.......+.||..|+..+ ..+++|++|+
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP----~~tifILaTt 156 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP----KHVIFILATT 156 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC----CceEEEEEcC
Confidence 222332110 0111111 1000 00 0111222345677888887742 4567777778
Q ss_pred CCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 000921 1070 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1136 (1223)
Q Consensus 1070 rp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~ 1136 (1223)
.++.|.+.+++|+ .++.|..++.++....|+..+.+.++. .+..+..||..+.| +.+++.+++..
T Consensus 157 e~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLek 222 (725)
T PRK07133 157 EVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQ 222 (725)
T ss_pred ChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 8899999999999 589999999999999999888776554 23347778888876 34455454443
No 108
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.3e-10 Score=133.56 Aligned_cols=118 Identities=22% Similarity=0.339 Sum_probs=102.5
Q ss_pred CCCCCCcceeccccCCCCceeeecceeEEccCCccceeecCCCCCccceEEEEe----------e-cCCcceEEEEEecC
Q 000921 128 VGSRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRI----------E-NGGPSGALLEITGG 196 (1223)
Q Consensus 128 ~~~~~pW~rLlsq~~~~p~~~i~~~~~tvG~~~~cd~~l~d~~~s~~~C~l~~~----------~-~~g~~~a~LE~~~~ 196 (1223)
.....||+||+-..-..+++.+.+.+|||||+..||+.++.+.+|+.|-++... . .+.+..+||+|+++
T Consensus 40 ~~~~~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~ 119 (475)
T KOG0615|consen 40 CATVKPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSR 119 (475)
T ss_pred cccccchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEeccc
Confidence 346789999999999999999999999999999999999999999888754432 2 34456899999999
Q ss_pred CceEEEcCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCcccCCCCCC
Q 000921 197 KGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAPGI 246 (1223)
Q Consensus 197 ~G~v~vNg~~~~k~~~~~L~~GDEv~f~~~~~~ayifq~l~~~~~~~~~~ 246 (1223)
||| +||-+.++||....|+|||||.++.+.+++++|.+++.+....+..
T Consensus 120 nGT-~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~d~~~~~pk 168 (475)
T KOG0615|consen 120 NGT-FVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSRDSSKVPPK 168 (475)
T ss_pred Ccc-cccHhHhhccccccccCCCEEEeccchhheeeeecccchhccCccc
Confidence 999 6999999999999999999999999999999999997665544433
No 109
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=1.1e-09 Score=134.61 Aligned_cols=162 Identities=22% Similarity=0.280 Sum_probs=114.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p------------- 1011 (1223)
..+|+||+|.+++++.|+..+.. .+.+..+|||||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 46899999999999999988754 2345789999999999999999999998542
Q ss_pred -----------eeEeeccccc--chhhhcccc------cCC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1012 -----------FINISMSSIT--SKVDSMLGR------REN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1012 -----------fI~Vs~seL~--skIDsI~g~------R~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
++.+++.+-. +.|..|... ... ...+.......+.|+..|+..+ ..+++|.
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp----~~~~fIl 154 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP----PHVKFIF 154 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC----CCeEEEE
Confidence 5556554311 112222100 000 0112222345678888888743 4577777
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccC
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1124 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeG 1124 (1223)
+|+.++.|.+.+++|+ ..+.|..++.++-...++.++.+.++. ++..+..|++.+.|
T Consensus 155 ~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 155 ATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred EeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 8888899999999998 688999999999888888888776653 34456777777776
No 110
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.08 E-value=3.7e-10 Score=100.25 Aligned_cols=67 Identities=31% Similarity=0.486 Sum_probs=58.8
Q ss_pred eEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEEEc
Q 000921 154 FTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (1223)
Q Consensus 154 ~tvG~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~LE~~-~~~G~v~vNg~~~~k~~~~~L~~GDEv~f~ 224 (1223)
|+|||+..||+.|+++.+|..||.|...+. ..++|++. +.||| +|||+.+.++..+.|..||+|.|+
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt-~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGT-FVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-E-EETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcE-EECCEEcCCCCEEECCCCCEEEcC
Confidence 799999999999999999999999997643 33899997 58888 799999999999999999999985
No 111
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=1.6e-09 Score=132.85 Aligned_cols=161 Identities=19% Similarity=0.215 Sum_probs=112.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|+||.|.+.+++.|+.++.. .+.+..+|||||+|||||++|+++|+.+.+
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 46899999999999999998754 234467899999999999999999998763
Q ss_pred ------------ceeEeecccccchhhhc---c----c-ccCC-------CChhHHHHHHHHHHHHHhccCCCCCCccEE
Q 000921 1011 ------------NFINISMSSITSKVDSM---L----G-RREN-------PGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1063 (1223)
Q Consensus 1011 ------------pfI~Vs~seL~skIDsI---~----g-~R~s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVL 1063 (1223)
.++.++++... .||.+ . - .... ...+.......+.||..|+..+ ..++
T Consensus 76 C~~i~~~~~~~~dvieidaas~~-gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp----~~~~ 150 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHG-GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP----EHLI 150 (584)
T ss_pred HHHhhcccCCCceEEEecccccc-CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC----CCeE
Confidence 24445543321 12221 0 0 0000 0111122346677888888743 4577
Q ss_pred EEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccC
Q 000921 1064 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1124 (1223)
Q Consensus 1064 VIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeG 1124 (1223)
+|++|+.++.|.+.+++|+ ..+.|..++.++..+.++.++.+.++. ++..+..+++.+.|
T Consensus 151 fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 151 FIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG 211 (584)
T ss_pred EEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7777788899999999997 789999999999999999988876643 33345666666665
No 112
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=2.1e-09 Score=128.57 Aligned_cols=172 Identities=20% Similarity=0.230 Sum_probs=116.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|+||+|.+.+++.|+..+.. .+.+.++|||||||+|||++|+++|+.+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 47899999999999999988754 233578999999999999999999998743
Q ss_pred -----------ceeEeeccccc--chhhhcc---ccc---CC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1011 -----------NFINISMSSIT--SKVDSML---GRR---EN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1011 -----------pfI~Vs~seL~--skIDsI~---g~R---~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
.++.+++.... +.+..+. ... .. ...+.......+.|+..|+..+ ..+++|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~----~~~~~I 155 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP----QHVKFF 155 (451)
T ss_pred HHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC----CCceEE
Confidence 35555543221 1111111 000 00 0111122335667788887732 456777
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHH
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1135 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~ 1135 (1223)
++|+.+..|.+++++|+ ..++|..++.++....++..+.+.++. ++..++.|+..+.| +.+++.++++
T Consensus 156 l~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Le 224 (451)
T PRK06305 156 LATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYD 224 (451)
T ss_pred EEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 77788899999999999 679999999999998888888776543 44457778888765 3334444433
No 113
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=3.2e-09 Score=128.09 Aligned_cols=174 Identities=20% Similarity=0.306 Sum_probs=115.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
+.+|+++.|.+.+.+.|+..+.. ...+..+|||||||+|||++|+.+|..+.+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 46899999999999999988754 223467899999999999999999999863
Q ss_pred ----------ceeEeecccccchhh---hcc------cccCC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1011 ----------NFINISMSSITSKVD---SML------GRREN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1011 ----------pfI~Vs~seL~skID---sI~------g~R~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
.++.++++.-. .+| .|. +..+. ...+.......+.|+..|+..+ ..+++|
T Consensus 79 c~~i~~g~~~d~~eidaas~~-gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp----~~~v~I 153 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASNR-GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP----PRTIFI 153 (486)
T ss_pred HHHHhcCCCCcEEEEeCccCC-CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC----CCeEEE
Confidence 13333332211 111 110 00000 0111122335567777777643 234555
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
.+|+.++.+.+++++|+ ..+.|+.|+.++....++.++...++. ++..+..|+..+.| +.+++.++++.+.
T Consensus 154 l~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 154 LCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQAS 225 (486)
T ss_pred EEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 55667888888999998 479999999999999999998887654 33346778887775 3455555555543
No 114
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.06 E-value=2.6e-09 Score=136.36 Aligned_cols=157 Identities=17% Similarity=0.315 Sum_probs=105.2
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceeEe
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el----------g~pfI~V 1015 (1223)
-.++++.|.++..+.+.+.+.. ....++||+||||||||++|+.+|..+ +..++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4677899999876666654422 112589999999999999999999986 2456766
Q ss_pred ecccccch----------------------------hh---hcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEE
Q 000921 1016 SMSSITSK----------------------------VD---SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1064 (1223)
Q Consensus 1016 s~seL~sk----------------------------ID---sI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLV 1064 (1223)
+...+... || .|.+.+...+..+ .-+.|+-.| .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~n~Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGD----AANLLKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccccc----HHHHhhHHh------hCCCeEE
Confidence 66544311 22 2333332212111 112222222 2367889
Q ss_pred EeecCC-----CCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHccCCcH
Q 000921 1065 LAATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 1127 (1223)
Q Consensus 1065 IATTNr-----p~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~----l-~~dvDL~~LA~~TeGySG 1127 (1223)
||||+. ...+|+||.||| ..|.|+.|+.+++.+||+.+..... + ..+..+..++.++.+|-.
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 999875 355999999999 5899999999999999877765432 1 145568888999988744
No 115
>PRK08727 hypothetical protein; Validated
Probab=99.05 E-value=8.2e-09 Score=113.35 Aligned_cols=131 Identities=21% Similarity=0.260 Sum_probs=83.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch---------------hhhcccccCCCChhHHHHHHHHH
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---------------VDSMLGRRENPGEHEAMRKMKNE 1046 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk---------------IDsI~g~R~s~~e~e~~~rIl~~ 1046 (1223)
..++||||+|||||+|+.|+|.++ +...+.++..++... ||++......... ...+-.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~----~~~lf~ 117 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQRED----EVALFD 117 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHH----HHHHHH
Confidence 459999999999999999998775 566666666554332 4554322211111 112222
Q ss_pred HHHHhccCCCCCCccEEEEeecCCCCCC---CHHHHccc--CceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHH
Q 000921 1047 FMVNWDGLRTKDKERVLVLAATNRPFDL---DEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIAN 1120 (1223)
Q Consensus 1047 LL~~LDgl~~k~~~rVLVIATTNrp~~L---D~ALlRRF--d~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~ 1120 (1223)
+++.+.. ++.-+|+.+...|..+ ++++++|| ...+.++.|+.++|..|++......++. ++..++.|++
T Consensus 118 l~n~~~~-----~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~ 192 (233)
T PRK08727 118 FHNRARA-----AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLT 192 (233)
T ss_pred HHHHHHH-----cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3333221 1222444444566655 68999997 5678899999999999999876654443 4445778888
Q ss_pred HccC
Q 000921 1121 MADG 1124 (1223)
Q Consensus 1121 ~TeG 1124 (1223)
++.|
T Consensus 193 ~~~r 196 (233)
T PRK08727 193 HGER 196 (233)
T ss_pred hCCC
Confidence 8764
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=2.2e-09 Score=126.54 Aligned_cols=173 Identities=18% Similarity=0.226 Sum_probs=111.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|++|.|.+.+++.|+..+.. .+.+.++|||||||+|||++|+++|+.+.+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 46899999999999999887753 233578999999999999999999999865
Q ss_pred ------------------ceeEeeccccc--chh----hhccc-ccCCC-------ChhHHHHHHHHHHHHHhccCCCCC
Q 000921 1011 ------------------NFINISMSSIT--SKV----DSMLG-RRENP-------GEHEAMRKMKNEFMVNWDGLRTKD 1058 (1223)
Q Consensus 1011 ------------------pfI~Vs~seL~--skI----DsI~g-~R~s~-------~e~e~~~rIl~~LL~~LDgl~~k~ 1058 (1223)
+|+.+++.... +.| +.+.- ..... ..+.......+.|+..++..+
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~--- 155 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP--- 155 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC---
Confidence 23334332211 111 11100 00000 011111234456777776542
Q ss_pred CccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 000921 1059 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1136 (1223)
Q Consensus 1059 ~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~ 1136 (1223)
...++|.+|+.+..+-+++.+|+ ..++|..++.++-...++..+...+.. ++..++.|+..+.| +.+.+.++++.
T Consensus 156 -~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~k 231 (397)
T PRK14955 156 -PHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQ 231 (397)
T ss_pred -CCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 34455556666788888898888 578999999988888888888765542 44457778888875 34444444443
No 117
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.03 E-value=2.9e-09 Score=133.38 Aligned_cols=172 Identities=20% Similarity=0.343 Sum_probs=108.6
Q ss_pred CCCcccccCcHHHHH---HHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 945 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~---~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
..+|+|+.|.+.+.. .|+.++.. . ...++|||||||||||++|++||+..+.+|+.+++...-
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~----------~----~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~ 89 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA----------D----RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG 89 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh
Confidence 367899999999885 45554432 1 124799999999999999999999999999988875211
Q ss_pred -----chhhhc---ccccCCC------ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeec--CCCCCCCHHHHcccCce
Q 000921 1022 -----SKVDSM---LGRRENP------GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT--NRPFDLDEAVVRRLPRR 1085 (1223)
Q Consensus 1022 -----skIDsI---~g~R~s~------~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATT--Nrp~~LD~ALlRRFd~~ 1085 (1223)
..++.+ ....... .-+.......+.|+..++. ..+++|++| |....+++++++|+ ..
T Consensus 90 i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~------g~IiLI~aTTenp~~~l~~aL~SR~-~v 162 (725)
T PRK13341 90 VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN------GTITLIGATTENPYFEVNKALVSRS-RL 162 (725)
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC------ceEEEEEecCCChHhhhhhHhhccc-cc
Confidence 111111 0000000 0111111122334443432 456666655 34467899999997 67
Q ss_pred eeecCCCHHHHHHHHHHHHhh-------cccC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1086 LMVNLPDAPNREKIIRVILAK-------EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1086 I~VplPd~eeR~~ILr~~L~k-------~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
+.|+.++.+++..|++.++.. ..+. ++..++.|++.+.| ..+.+.++++.|+
T Consensus 163 ~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 163 FRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 999999999999999998873 1121 23346778877755 4455556555554
No 118
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.03 E-value=4.5e-09 Score=125.62 Aligned_cols=190 Identities=18% Similarity=0.275 Sum_probs=111.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch------------------------hhhcccccCCCChh
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------------------------VDSMLGRRENPGEH 1037 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk------------------------IDsI~g~R~s~~e~ 1037 (1223)
+.++||||+|+|||+|++++|+++ +..++.+++.++... ||++-.-...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k---- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGK---- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCC----
Confidence 679999999999999999999986 688888887654322 3332111110
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCC---CCCHHHHcccC--ceeeecCCCHHHHHHHHHHHHhhcccC-C
Q 000921 1038 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-S 1111 (1223)
Q Consensus 1038 e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~---~LD~ALlRRFd--~~I~VplPd~eeR~~ILr~~L~k~~l~-~ 1111 (1223)
+ ....+|+..+..+... ++.+|++++..|. .+++.+++||. ..+.+..|+.++|..||+..+...++. +
T Consensus 218 ~---~~qeelf~l~N~l~~~--~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~ 292 (445)
T PRK12422 218 G---ATQEEFFHTFNSLHTE--GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIE 292 (445)
T ss_pred h---hhHHHHHHHHHHHHHC--CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 0 1112233333222211 2345555555454 46789999996 788888999999999999988876543 3
Q ss_pred cccHHHHHHHccCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCcc
Q 000921 1112 DVDLEGIANMADGYSGSDLKNLCVTAAHCP-IREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1190 (1223)
Q Consensus 1112 dvDL~~LA~~TeGySGaDL~~L~~~Aa~~a-ireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS 1190 (1223)
+.-++.||....+ ..+.|.+++...+.+. ..+ ...+++++++.++++..+...
T Consensus 293 ~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~-------------------------~~~~~i~~~~~~~~l~~~~~~ 346 (445)
T PRK12422 293 ETALDFLIEALSS-NVKSLLHALTLLAKRVAYKK-------------------------LSHQLLYVDDIKALLHDVLEA 346 (445)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHH-------------------------hhCCCCCHHHHHHHHHHhhhc
Confidence 3346667777664 3344444444432211 111 123568888888888765221
Q ss_pred ccc-cccccccchhHhhhcC
Q 000921 1191 VSS-ESTNMNELLQWNELYG 1209 (1223)
Q Consensus 1191 ~s~-e~~~~~p~v~WnDIGG 1209 (1223)
.-. ......=...|.+-||
T Consensus 347 ~~~~~~t~~~I~~~Va~~~~ 366 (445)
T PRK12422 347 AESVRLTPSKIIRAVAQYYG 366 (445)
T ss_pred ccCCCCCHHHHHHHHHHHhC
Confidence 111 1122222345666666
No 119
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.02 E-value=1.5e-09 Score=138.74 Aligned_cols=155 Identities=20% Similarity=0.341 Sum_probs=104.1
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceeEe
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el----------g~pfI~V 1015 (1223)
-.++++.|.++..+.+.+++.. ....++||+||||||||++|+++|..+ +.+++.+
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3567899999877777665533 112579999999999999999999998 7888888
Q ss_pred ecccccch-------------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEE
Q 000921 1016 SMSSITSK-------------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1064 (1223)
Q Consensus 1016 s~seL~sk-------------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLV 1064 (1223)
+...++.. ++.|.+.....+..... .+ |+-.+ .++.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~-~~---lkp~l------~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG-NM---LKPAL------ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH-HH---hcchh------hcCCCeE
Confidence 77664321 22333333222222211 12 21111 2367999
Q ss_pred EeecCCCC-----CCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-----CcccHHHHHHHccCC
Q 000921 1065 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1125 (1223)
Q Consensus 1065 IATTNrp~-----~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-----~dvDL~~LA~~TeGy 1125 (1223)
||||+..+ .+|+++.|||+ .|.++.|+.+++..||+.+..+.... .+..+...+.+++.|
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 99998876 48999999996 68899999999999999887653322 233345555555554
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=5.2e-09 Score=128.84 Aligned_cols=173 Identities=25% Similarity=0.225 Sum_probs=118.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 1012 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pf------------ 1012 (1223)
..+|+||+|.+.+++.|...+.. .+.+.++|||||+|+|||++|+++|+.+.+..
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 46899999999999999987754 23457999999999999999999999986532
Q ss_pred -----------------eEeecccccchhhhc---cc----ccCCC--------ChhHHHHHHHHHHHHHhccCCCCCCc
Q 000921 1013 -----------------INISMSSITSKVDSM---LG----RRENP--------GEHEAMRKMKNEFMVNWDGLRTKDKE 1060 (1223)
Q Consensus 1013 -----------------I~Vs~seL~skIDsI---~g----~R~s~--------~e~e~~~rIl~~LL~~LDgl~~k~~~ 1060 (1223)
+.+++..-. .||.| .. ..... ..+.......+.||..|+..+ .
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~-gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp----~ 161 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHT-GVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP----P 161 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccC-CHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC----C
Confidence 222222111 12221 10 00000 112222345677888887743 3
Q ss_pred cEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHH
Q 000921 1061 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1137 (1223)
Q Consensus 1061 rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~A 1137 (1223)
.+.+|.+|+.++.+.+.+++|+ ..+.|..++.++....++..+.+.++. .+..++.|+..+.| +.+++.+++..+
T Consensus 162 ~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkl 237 (598)
T PRK09111 162 HVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQA 237 (598)
T ss_pred CeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 4566666777778888899998 679999999999999999998877654 33457778888876 566666666554
No 121
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=6.3e-09 Score=120.95 Aligned_cols=172 Identities=20% Similarity=0.255 Sum_probs=111.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------c--e
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA----------N--F 1012 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~----------p--f 1012 (1223)
+.+|++|+|.+.+++.+...+.. ...+.++|||||||+|||++|+++|+.+.. + +
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 47899999999999999888754 123478999999999999999999998754 2 2
Q ss_pred eEeeccccc--ch----hhhcc--cccCC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHH
Q 000921 1013 INISMSSIT--SK----VDSML--GRREN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAV 1078 (1223)
Q Consensus 1013 I~Vs~seL~--sk----IDsI~--g~R~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~AL 1078 (1223)
+.++..... +. ++.+. +.... ...+.......+.|+..++..+ ...++|.+|+.+..+.+++
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~----~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPP----AHAIFILATTEKHKIIPTI 155 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCC----CceEEEEEeCCcccCCHHH
Confidence 333332211 11 22111 00000 0001111234566777776532 3345556677778889999
Q ss_pred HcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHH
Q 000921 1079 VRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1135 (1223)
Q Consensus 1079 lRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~ 1135 (1223)
.+|+ ..+.++.|+.++...++...+.+.++. ++..++.|+..+.| +.+.+.+.++
T Consensus 156 ~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~le 211 (367)
T PRK14970 156 LSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFD 211 (367)
T ss_pred Hhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 9998 578999999999999999888776653 44557777777665 3344434333
No 122
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.00 E-value=3.7e-09 Score=118.45 Aligned_cols=168 Identities=21% Similarity=0.287 Sum_probs=114.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------eeEeecc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 1018 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p------fI~Vs~s 1018 (1223)
..+|+++.|.+.+.+.|+..+.. + .. -.+|||||||||||+.|+++|+++..+ +...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~---------~---~l--p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR---------R---IL--PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh---------c---CC--ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 57899999999999999987743 1 11 379999999999999999999999662 2333444
Q ss_pred cccch---------hhhcc-------cccCCC-------ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCC
Q 000921 1019 SITSK---------VDSML-------GRRENP-------GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1075 (1223)
Q Consensus 1019 eL~sk---------IDsI~-------g~R~s~-------~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD 1075 (1223)
+-.+. ++.+. +..... .-+.......+.|...|+... +.+.+|..||+++.|.
T Consensus 98 derGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s----~~trFiLIcnylsrii 173 (346)
T KOG0989|consen 98 DERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS----RTTRFILICNYLSRII 173 (346)
T ss_pred ccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc----cceEEEEEcCChhhCC
Confidence 43222 11111 110000 111222345556777777742 6688899999999999
Q ss_pred HHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCC-cccHHHHHHHccCCcHHHHHHHHH
Q 000921 1076 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDLEGIANMADGYSGSDLKNLCV 1135 (1223)
Q Consensus 1076 ~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~-dvDL~~LA~~TeGySGaDL~~L~~ 1135 (1223)
..+.+|+ ..+.|+....+.....|+.+..++++.- +..+..|+..++| ||+..+.
T Consensus 174 ~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~Ait 229 (346)
T KOG0989|consen 174 RPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRAIT 229 (346)
T ss_pred hHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHH
Confidence 9999998 5577887777888888888888887653 3336677776665 5555443
No 123
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=5.2e-09 Score=126.96 Aligned_cols=174 Identities=21% Similarity=0.250 Sum_probs=121.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
+.+|++|.|.+.+++.|+..+.. .+.+..+|||||||+|||++|+++|+.+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 47899999999999999988754 123467899999999999999999998732
Q ss_pred ----------ceeEeecccccchhhhc---ccc---c-C-C-------CChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1011 ----------NFINISMSSITSKVDSM---LGR---R-E-N-------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1011 ----------pfI~Vs~seL~skIDsI---~g~---R-~-s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
.++.+++.+-. .+|.+ ... . . . ...+.......+.||..|+..+ ..+.+|
T Consensus 77 C~~~~~~~h~dv~eldaas~~-gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp----~~t~FI 151 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASNR-GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP----SYVKFI 151 (535)
T ss_pred HHHHhhcCCCeEEEecccccc-CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC----CceEEE
Confidence 24555543311 12221 100 0 0 0 0112222346677888888753 345566
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1138 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~Aa 1138 (1223)
.+|+.+..|.+++++|+ ..++|..++.++-...++..+.+.++. .+..+..|++.+.| +.+++.+++..|.
T Consensus 152 L~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqai 223 (535)
T PRK08451 152 LATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQAI 223 (535)
T ss_pred EEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHH
Confidence 66677899999999997 689999999999988898888876654 34457788888876 6667777766554
No 124
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=98.99 E-value=1.9e-09 Score=101.41 Aligned_cols=97 Identities=25% Similarity=0.418 Sum_probs=81.9
Q ss_pred cceeccccC--CCCceeeec-ceeEEccCCcc-ceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCC
Q 000921 134 WARLISQCS--QNSHLSMTG-AVFTVGHNRQC-DLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 209 (1223)
Q Consensus 134 W~rLlsq~~--~~p~~~i~~-~~~tvG~~~~c-d~~l~d~~~s~~~C~l~~~~~~g~~~a~LE~~~~~G~v~vNg~~~~k 209 (1223)
|+.|..+.. ..+.+.|.. ..|+|||+..| |+.|.++.+|..||.|.....+ ...+++..+.||+ +|||+.+.+
T Consensus 1 ~~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~--~~~~~~~~s~~g~-~vn~~~~~~ 77 (102)
T cd00060 1 VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG--GVVLIDLGSTNGT-FVNGQRVSP 77 (102)
T ss_pred CeEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC--CEEEEECCCCCCe-EECCEECCC
Confidence 566777765 567888888 99999999999 9999999999999999976433 3478889999999 699999999
Q ss_pred CceEEeeCCCEEEEccCCCeeEEee
Q 000921 210 DSQVVLRGGDELVFSPSGKHSYIFQ 234 (1223)
Q Consensus 210 ~~~~~L~~GDEv~f~~~~~~ayifq 234 (1223)
+.+++|..||+|.|+. +.+.|.|+
T Consensus 78 ~~~~~l~~gd~i~ig~-~~~~~~~~ 101 (102)
T cd00060 78 GEPVRLRDGDVIRLGN-TSISFRFE 101 (102)
T ss_pred CCcEECCCCCEEEECC-eEEEEEEe
Confidence 9999999999999976 45555554
No 125
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.99 E-value=1.2e-08 Score=115.04 Aligned_cols=161 Identities=22% Similarity=0.289 Sum_probs=106.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceeEeeccc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 1019 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el-----g~pfI~Vs~se 1019 (1223)
+.+|+|+.|.+++++.|..++.. . . . ..+|||||||||||++++++++++ ..+++.+++++
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~----------~--~-~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE----------K--N-M-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC----------C--C-C-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 46899999999999999987743 1 1 1 258999999999999999999997 24566665443
Q ss_pred ccc------hhhhcccc--cC-CC-------ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccC
Q 000921 1020 ITS------KVDSMLGR--RE-NP-------GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1083 (1223)
Q Consensus 1020 L~s------kIDsI~g~--R~-s~-------~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd 1083 (1223)
-.. .+..+... .. .. ..+.......+.|+..++... ....+|.++|.+..+.+++.+|+.
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~----~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 79 ERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS----QNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred ccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC----CCCeEEEEeCCccccchhHHHHhh
Confidence 221 11111110 00 00 001111123345555565543 234556677777788888888984
Q ss_pred ceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccC
Q 000921 1084 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1124 (1223)
Q Consensus 1084 ~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeG 1124 (1223)
.++++.++.++...+++.++.+.++. .+..++.|+..+.|
T Consensus 155 -~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 155 -VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred -eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 68999999999999999999876653 44457888887765
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=9.9e-09 Score=126.59 Aligned_cols=173 Identities=23% Similarity=0.284 Sum_probs=114.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p------------- 1011 (1223)
..+|++|+|.+.+++.|+..+.. .+.+..+|||||||+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 46899999999999999887754 1234678999999999999999999987531
Q ss_pred ------------eeEeecccccc--h----hhhcccc-cCC-------CChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1012 ------------FINISMSSITS--K----VDSMLGR-REN-------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1012 ------------fI~Vs~seL~s--k----IDsI~g~-R~s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
++.++...... . ++.+... ... ...+.......+.|+..|+... ..+++|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp----~~tv~I 154 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP----PHAIFI 154 (585)
T ss_pred HHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC----CCeEEE
Confidence 33344322111 0 1111100 000 0011112345667787777643 345666
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1136 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~ 1136 (1223)
.+|+.++.+.+.+++|+ ..+.|..++..+...+++.++.+.++. ++..+..|+..+.| +.+++.++++.
T Consensus 155 l~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~Lek 224 (585)
T PRK14950 155 LATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQ 224 (585)
T ss_pred EEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 66677788888898898 568999999999999999888776543 33447788888876 55555555543
No 127
>PRK05642 DNA replication initiation factor; Validated
Probab=98.97 E-value=8.7e-09 Score=113.25 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=91.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch---------------hhhcccccCCCChhHHHHHHHHH
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---------------VDSMLGRRENPGEHEAMRKMKNE 1046 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk---------------IDsI~g~R~s~~e~e~~~rIl~~ 1046 (1223)
..++||||+|||||+|++++|+++ +..++.++..+++.. ||.+...... . ....+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~---~----~~~~~ 118 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGK---A----DWEEA 118 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCC---h----HHHHH
Confidence 679999999999999999999765 567778887776532 3444211111 0 11223
Q ss_pred HHHHhccCCCCCCccEEEEeecCCCCC---CCHHHHcccC--ceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHH
Q 000921 1047 FMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIAN 1120 (1223)
Q Consensus 1047 LL~~LDgl~~k~~~rVLVIATTNrp~~---LD~ALlRRFd--~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~ 1120 (1223)
|...++.+.. +++.+||+++..|.. +.+.+++||. ..+.+..|+.++|.+|++......++. ++.-++.|++
T Consensus 119 Lf~l~n~~~~--~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~ 196 (234)
T PRK05642 119 LFHLFNRLRD--SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILT 196 (234)
T ss_pred HHHHHHHHHh--cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4444443332 245677777765543 3688999994 666778999999999999665544332 4445777888
Q ss_pred HccCCcHHHHHHHHHH
Q 000921 1121 MADGYSGSDLKNLCVT 1136 (1223)
Q Consensus 1121 ~TeGySGaDL~~L~~~ 1136 (1223)
+.++ +.+.|..+++.
T Consensus 197 ~~~~-d~r~l~~~l~~ 211 (234)
T PRK05642 197 RGTR-SMSALFDLLER 211 (234)
T ss_pred hcCC-CHHHHHHHHHH
Confidence 8774 45555555543
No 128
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.97 E-value=1.1e-08 Score=122.23 Aligned_cols=150 Identities=20% Similarity=0.333 Sum_probs=92.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceeEeecccccch-hhhcccc---------cCCC-----ChhHHH---H
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK-VDSMLGR---------RENP-----GEHEAM---R 1041 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el-----g~pfI~Vs~seL~sk-IDsI~g~---------R~s~-----~e~e~~---~ 1041 (1223)
..++||||||||||+|++++|+++ +..++.+++.+++.. ++.+-.. +... .+-... .
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 469999999999999999999986 457788888775543 1111000 0000 000000 0
Q ss_pred HHHHHHHHHhccCCCCCCccEEEEeecCCCCC---CCHHHHcccC--ceeeecCCCHHHHHHHHHHHHhhcccC-CcccH
Q 000921 1042 KMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDL 1115 (1223)
Q Consensus 1042 rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~---LD~ALlRRFd--~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL 1115 (1223)
....+|+..+..+... .+.+||++...|.. +.+.+++||. ..+.+..|+.+.|..|++..+...++. ++.-+
T Consensus 211 ~~q~elf~~~n~l~~~--~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~ 288 (440)
T PRK14088 211 GVQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVL 288 (440)
T ss_pred HHHHHHHHHHHHHHHc--CCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 1122333334333321 34566666566665 4467788884 467889999999999999998764433 34447
Q ss_pred HHHHHHccCCcHHHHHHHHHHH
Q 000921 1116 EGIANMADGYSGSDLKNLCVTA 1137 (1223)
Q Consensus 1116 ~~LA~~TeGySGaDL~~L~~~A 1137 (1223)
+.||....| +.++|..++...
T Consensus 289 ~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 289 NFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred HHHHhcccc-CHHHHHHHHHHH
Confidence 888888775 555666655544
No 129
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.94 E-value=1.6e-08 Score=110.28 Aligned_cols=173 Identities=23% Similarity=0.297 Sum_probs=125.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccccc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~ 1021 (1223)
.+.+.+|.|++.+++.|.+... .|..+ .|.+.|||||..||||++|+||+-++. |..+|+|+-.+|.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~-------~F~~G---~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTE-------QFAEG---LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHH-------HHHcC---CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 4889999999999999976544 45543 367899999999999999999999987 6789999988866
Q ss_pred ch-----------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCH--------
Q 000921 1022 SK-----------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-------- 1076 (1223)
Q Consensus 1022 sk-----------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~-------- 1076 (1223)
.- +|.+- ...+ + .-...|...|||--.....+|+|.||+||.+.|++
T Consensus 126 ~Lp~l~~~Lr~~~~kFIlFcDDLS---Fe~g--d---~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~ 197 (287)
T COG2607 126 TLPDLVELLRARPEKFILFCDDLS---FEEG--D---DAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGS 197 (287)
T ss_pred hHHHHHHHHhcCCceEEEEecCCC---CCCC--c---hHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCc
Confidence 53 33331 1111 1 12345566778776667789999999999988774
Q ss_pred --------------HHHcccCceeeecCCCHHHHHHHHHHHHhhcccCC-c--ccHHHHHH--HccCCcHHHHHHHHH
Q 000921 1077 --------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-D--VDLEGIAN--MADGYSGSDLKNLCV 1135 (1223)
Q Consensus 1077 --------------ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~-d--vDL~~LA~--~TeGySGaDL~~L~~ 1135 (1223)
.+-.||...+.|+.+++++..+|+..+.+..++.- + .+.+.+.- .-.|-||+--.+.++
T Consensus 198 ~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~ 275 (287)
T COG2607 198 TGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIR 275 (287)
T ss_pred ccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHH
Confidence 23339999999999999999999999999887653 2 22233322 223567765444443
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=1.2e-08 Score=126.35 Aligned_cols=172 Identities=22% Similarity=0.268 Sum_probs=113.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|++|.|.+.+++.|+..+.. . +-..++|||||||+|||++|+++|+.+.+
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~----------~---rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS----------N---RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc----------C---CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 37899999999999999988864 1 12358999999999999999999999865
Q ss_pred ------------ceeEeecccc--cchhhhcccc----c-CC-------CChhHHHHHHHHHHHHHhccCCCCCCccEEE
Q 000921 1011 ------------NFINISMSSI--TSKVDSMLGR----R-EN-------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1064 (1223)
Q Consensus 1011 ------------pfI~Vs~seL--~skIDsI~g~----R-~s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLV 1064 (1223)
.++.++.... ++.|..+... . .. ..-+.......+.||..|+..+ ..+++
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp----~~tvf 154 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP----PRVVF 154 (620)
T ss_pred HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC----cCeEE
Confidence 2334443211 1111111100 0 00 0011112345677888888632 45666
Q ss_pred EeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHH
Q 000921 1065 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1135 (1223)
Q Consensus 1065 IATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~ 1135 (1223)
|++|+.+..+-+.+++|+ ..+.|..++.++-...++.+..+.++. ....+..|++.+.|-- +++.++++
T Consensus 155 IL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l-r~A~~lLe 224 (620)
T PRK14948 155 VLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL-RDAESLLD 224 (620)
T ss_pred EEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 777777888999999998 678899998888888888777765433 2344777888887632 44444443
No 131
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=1.3e-08 Score=125.57 Aligned_cols=162 Identities=19% Similarity=0.272 Sum_probs=109.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..+|++|.|.+.+++.|+..+.. .+-+.++||+||||||||++|+++|+.+.+
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 47899999999999999887753 223478999999999999999999999966
Q ss_pred ------------------ceeEeeccccc--chh----hhcc-cccCCC-------ChhHHHHHHHHHHHHHhccCCCCC
Q 000921 1011 ------------------NFINISMSSIT--SKV----DSML-GRRENP-------GEHEAMRKMKNEFMVNWDGLRTKD 1058 (1223)
Q Consensus 1011 ------------------pfI~Vs~seL~--skI----DsI~-g~R~s~-------~e~e~~~rIl~~LL~~LDgl~~k~ 1058 (1223)
+|+.+++.... +.| +.+. ...... ..+.......+.|+..|+..+
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp--- 155 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP--- 155 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC---
Confidence 23333332211 111 1110 000000 011112234567888887743
Q ss_pred CccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHccC
Q 000921 1059 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADG 1124 (1223)
Q Consensus 1059 ~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l-~~dvDL~~LA~~TeG 1124 (1223)
..+++|.+|+.+..|-+.+++|+ ..++|..++.++-...++.++.+.++ .++..++.|+.++.|
T Consensus 156 -~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 156 -PHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred -CCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 33455555566788888999998 78999999999988888888877654 245557888888876
No 132
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.92 E-value=6.9e-09 Score=132.90 Aligned_cols=157 Identities=17% Similarity=0.314 Sum_probs=106.4
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceeEe
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el----------g~pfI~V 1015 (1223)
-.++.+.|.++..+.+.+++.. +...++||+||||||||++|+++|..+ +.+++.+
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3566889999877777665532 122578999999999999999999986 6778887
Q ss_pred ecccccch-------------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEE
Q 000921 1016 SMSSITSK-------------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1064 (1223)
Q Consensus 1016 s~seL~sk-------------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLV 1064 (1223)
+...++.. |+.|++.+...+... ..+.|.-.+ .+..+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~~~Lk~~l------~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD----AGNMLKPAL------ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH----HHHHhchhh------hcCceEE
Confidence 76554311 233333222211111 112222111 2367899
Q ss_pred EeecCCC-----CCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-----CcccHHHHHHHccCCcH
Q 000921 1065 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGYSG 1127 (1223)
Q Consensus 1065 IATTNrp-----~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-----~dvDL~~LA~~TeGySG 1127 (1223)
|++|+.. ..+|+++.|||. .|.++.|+.+++..||+.+..+.... .+..+..++.++.+|..
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 9999866 458999999995 58999999999999999887664432 34457777888877744
No 133
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.92 E-value=3.5e-08 Score=122.33 Aligned_cols=208 Identities=20% Similarity=0.227 Sum_probs=122.3
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceeEe
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el----------g~pfI~V 1015 (1223)
.+|++|+|.+...+.+...+.. . .+..+||+||||||||++|++++... +.+|+.+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~-------------~-~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS-------------P-FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc-------------C-CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 5788999999988887655432 1 13579999999999999999998766 4578999
Q ss_pred ecccccch---h-hhccccc---------------------------CCC------ChhHHHHHHHHHHHHHhccCC---
Q 000921 1016 SMSSITSK---V-DSMLGRR---------------------------ENP------GEHEAMRKMKNEFMVNWDGLR--- 1055 (1223)
Q Consensus 1016 s~seL~sk---I-DsI~g~R---------------------------~s~------~e~e~~~rIl~~LL~~LDgl~--- 1055 (1223)
++..+... + ..+++.- .+. ..+.........|+..|+.-.
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~ 296 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEF 296 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEe
Confidence 88764210 1 0011100 000 000000112333444443210
Q ss_pred ---------------------CCCCccEEEE-eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-Cc
Q 000921 1056 ---------------------TKDKERVLVL-AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SD 1112 (1223)
Q Consensus 1056 ---------------------~k~~~rVLVI-ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~d 1112 (1223)
......+++| +||+.++.+++++++||. .++++.++.+++..|++.++.+..+. .+
T Consensus 297 ~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~ 375 (615)
T TIGR02903 297 SSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKINVHLAA 375 (615)
T ss_pred ecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 0011234444 456778899999999995 67889999999999999998875432 23
Q ss_pred ccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcC
Q 000921 1113 VDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1188 (1223)
Q Consensus 1113 vDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~ 1188 (1223)
.-++.|+..+. .|+...+++..+...+..+... . . .......|+.+|+.+++..-+
T Consensus 376 eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~--------~-~---------~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 376 GVEELIARYTI--EGRKAVNILADVYGYALYRAAE--------A-G---------KENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHH--------h-c---------cCCCCeeECHHHHHHHhCCCc
Confidence 33555555543 3444444444443322222100 0 0 011235799999999988543
No 134
>PRK06620 hypothetical protein; Validated
Probab=98.91 E-value=2.2e-08 Score=108.94 Aligned_cols=136 Identities=17% Similarity=0.198 Sum_probs=85.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeec--ccccch-----hhhcccccCCCChhHHHHHHHHHHHHHhccCCCC
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM--SSITSK-----VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1057 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~--seL~sk-----IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k 1057 (1223)
..++||||||||||+|++++|+..+..++.-.. ...... ||.+- +. . ...+-.+++.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi~--~~---~----~~~lf~l~N~~~e---- 111 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDIE--NW---Q----EPALLHIFNIINE---- 111 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEeccc--cc---h----HHHHHHHHHHHHh----
Confidence 679999999999999999999998875543110 001111 44432 00 1 1122222222221
Q ss_pred CCccEEEEeecCCCCC--CCHHHHcccC--ceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHH
Q 000921 1058 DKERVLVLAATNRPFD--LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKN 1132 (1223)
Q Consensus 1058 ~~~rVLVIATTNrp~~--LD~ALlRRFd--~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~ 1132 (1223)
+++.+||+++..|.. + +++++||. ..+.+..|+.+.+..+++......++. ++.-++.|+++..| +.+.+.+
T Consensus 112 -~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~ 188 (214)
T PRK06620 112 -KQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIE 188 (214)
T ss_pred -cCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHH
Confidence 245677777755554 5 78999994 368899999999999999988765443 44457888888865 4444544
Q ss_pred HHHH
Q 000921 1133 LCVT 1136 (1223)
Q Consensus 1133 L~~~ 1136 (1223)
++..
T Consensus 189 ~l~~ 192 (214)
T PRK06620 189 ILEN 192 (214)
T ss_pred HHHH
Confidence 4443
No 135
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.91 E-value=1.3e-08 Score=120.31 Aligned_cols=194 Identities=20% Similarity=0.242 Sum_probs=116.6
Q ss_pred cccCcHHHHHHHHHHHHccccChHhh-hc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch--
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-- 1023 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf-~k---~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk-- 1023 (1223)
-|+|++++++.+...+....++.... .. .+......+|||+||||||||++|++||..++.||+.+++..+...
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 36899999999987764322221110 00 0111224689999999999999999999999999998887654321
Q ss_pred --------------------------------hhhcccccCCCChh-HH-HHHHHHHHHHHhccCCC----C-----CCc
Q 000921 1024 --------------------------------VDSMLGRRENPGEH-EA-MRKMKNEFMVNWDGLRT----K-----DKE 1060 (1223)
Q Consensus 1024 --------------------------------IDsI~g~R~s~~e~-e~-~~rIl~~LL~~LDgl~~----k-----~~~ 1060 (1223)
||.+..++.+.... .. ...+.+.||..|+|... . ...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 22222221111000 00 01467778888876532 1 123
Q ss_pred cEEEEeecCCCC--------------------------------------------------CCCHHHHcccCceeeecC
Q 000921 1061 RVLVLAATNRPF--------------------------------------------------DLDEAVVRRLPRRLMVNL 1090 (1223)
Q Consensus 1061 rVLVIATTNrp~--------------------------------------------------~LD~ALlRRFd~~I~Vpl 1090 (1223)
..++|.|+|-.+ -+.|+|+.|++.++.|..
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~p 317 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEK 317 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCC
Confidence 467888887510 034677779999999999
Q ss_pred CCHHHHHHHHHHH----Hhhc-------ccC---CcccHHHHHHHc--cCCcHHHHHHHHHHHHHHHHH
Q 000921 1091 PDAPNREKIIRVI----LAKE-------ELA---SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIR 1143 (1223)
Q Consensus 1091 Pd~eeR~~ILr~~----L~k~-------~l~---~dvDL~~LA~~T--eGySGaDL~~L~~~Aa~~air 1143 (1223)
.+.++..+|+..- +++. ++. ++.-++.||+.. ..+-++-|+.+++.....++-
T Consensus 318 L~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 318 LDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 9999999998763 2221 111 122256666653 245556666666655554444
No 136
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.91 E-value=2.3e-08 Score=127.72 Aligned_cols=157 Identities=21% Similarity=0.332 Sum_probs=108.7
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceeEe
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el----------g~pfI~V 1015 (1223)
-.|+.|.|-++.++.+.+++.. +..+++||+||||||||++|+++|..+ +.+|+.+
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 4577899999999999887643 123689999999999999999999987 4788888
Q ss_pred ecccccch------------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1016 SMSSITSK------------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1016 s~seL~sk------------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
++..++.. |+.|++.....+.... ..+ |...+ .++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~-a~l---Lkp~l------~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDA-ANI---LKPAL------ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccH-HHH---hHHHH------hCCCcEEE
Confidence 87665421 3333443332222111 112 22222 23568889
Q ss_pred eecCCC-----CCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhc----cc-CCcccHHHHHHHccCCcH
Q 000921 1066 AATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGYSG 1127 (1223)
Q Consensus 1066 ATTNrp-----~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~----~l-~~dvDL~~LA~~TeGySG 1127 (1223)
++|+.. ...|+++.+||. .|.++.|+.++...|++.+.... ++ ..+..+..++.++.+|.+
T Consensus 312 gaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 888865 358899999995 58999999999999998765431 22 244457888888888765
No 137
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.89 E-value=4.7e-08 Score=121.57 Aligned_cols=175 Identities=17% Similarity=0.215 Sum_probs=105.6
Q ss_pred ccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceeEeecc
Q 000921 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 1018 (1223)
Q Consensus 949 dDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el----------g~pfI~Vs~s 1018 (1223)
+.|.|-++.+++|..++...+.. ..+...++++|+||||||++++.+..++ .+.++.|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIkg---------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ---------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 47899999999999888653321 1233345699999999999999998876 2567889985
Q ss_pred cccch-------hhhcccccCCCC--hhHHHHHHH--------------------------HHHHHHhccCCCCCCccEE
Q 000921 1019 SITSK-------VDSMLGRRENPG--EHEAMRKMK--------------------------NEFMVNWDGLRTKDKERVL 1063 (1223)
Q Consensus 1019 eL~sk-------IDsI~g~R~s~~--e~e~~~rIl--------------------------~~LL~~LDgl~~k~~~rVL 1063 (1223)
.+... ...|++.....+ ......++. ..|+..++... ..+.+|+
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~-~s~SKLi 904 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT-KINSKLV 904 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh-ccCCeEE
Confidence 53322 111111110000 000111111 11111121111 1346799
Q ss_pred EEeecCC---CCCCCHHHHcccCc-eeeecCCCHHHHHHHHHHHHhhc-ccCCcccHHHHHHHccCCcHHHHHHHH
Q 000921 1064 VLAATNR---PFDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLC 1134 (1223)
Q Consensus 1064 VIATTNr---p~~LD~ALlRRFd~-~I~VplPd~eeR~~ILr~~L~k~-~l~~dvDL~~LA~~TeGySGaDL~~L~ 1134 (1223)
|||++|. ++.|++.+++||.. +|.|++++.+++..||+..+... .+-.+..++.+|+.+.. ..+|++.++
T Consensus 905 LIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq-~SGDARKAL 979 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN-VSGDIRKAL 979 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh-cCCHHHHHH
Confidence 9999986 56677888888854 48899999999999999987653 22234446677765542 234655543
No 138
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=2.3e-08 Score=123.75 Aligned_cols=173 Identities=20% Similarity=0.267 Sum_probs=117.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--------------- 1009 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg--------------- 1009 (1223)
..+|++|.|.+.+++.|...+.. .+.+..+|||||+|+|||++|+.+|+.+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 47899999999999999988754 23457899999999999999999999875
Q ss_pred ----------CceeEeeccccc--chhhhcc---------cccCC---CChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1010 ----------ANFINISMSSIT--SKVDSML---------GRREN---PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1010 ----------~pfI~Vs~seL~--skIDsI~---------g~R~s---~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
.+|+.+++.+.. +.|..+. +.+.- ...+.......+.|+..|+..+ ...++|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp----~~tifI 155 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP----SYAIFI 155 (614)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC----CCeEEE
Confidence 355666654322 1111111 00000 0011112345667888888753 335555
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1136 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySGaDL~~L~~~ 1136 (1223)
++|+.+..|-+++++|+ ..+.|..++.++-...++.++.+.++. .+..+..|+..+.| +.+++.+++..
T Consensus 156 L~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~al~~Lek 225 (614)
T PRK14971 156 LATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRDALSIFDQ 225 (614)
T ss_pred EEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 66666788889999998 679999999999999999888887664 33347888888865 44444444433
No 139
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.89 E-value=2.3e-08 Score=122.49 Aligned_cols=142 Identities=25% Similarity=0.380 Sum_probs=91.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceeEeecccccch------------------------hhhcccccCCCC
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK------------------------VDSMLGRRENPG 1035 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el-----g~pfI~Vs~seL~sk------------------------IDsI~g~R~s~~ 1035 (1223)
+.++|||++|||||+|++|||+++ +..++.+++.+++.. ||.|..-...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gk-- 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK-- 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCC--
Confidence 459999999999999999999987 567888888765432 3333211111
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCC----CCCCHHHHcccC--ceeeecCCCHHHHHHHHHHHHhhccc
Q 000921 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP----FDLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEEL 1109 (1223)
Q Consensus 1036 e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp----~~LD~ALlRRFd--~~I~VplPd~eeR~~ILr~~L~k~~l 1109 (1223)
+. ...+|+..++.+... ++-+|| |+|.+ ..+++.|++||. ..+.+..|+.+.|..||+..+...++
T Consensus 393 --e~---tqeeLF~l~N~l~e~--gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 393 --ES---TQEEFFHTFNTLHNA--NKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred --HH---HHHHHHHHHHHHHhc--CCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 11 112223333333221 223444 55543 357889999994 55588899999999999999887665
Q ss_pred C-CcccHHHHHHHccCCcHHHHHHHHHHH
Q 000921 1110 A-SDVDLEGIANMADGYSGSDLKNLCVTA 1137 (1223)
Q Consensus 1110 ~-~dvDL~~LA~~TeGySGaDL~~L~~~A 1137 (1223)
. .+.-++.||.+..+ +.+.|..++...
T Consensus 465 ~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 465 NAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred CCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 4 34447788888764 455666555543
No 140
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.86 E-value=3.3e-08 Score=110.44 Aligned_cols=119 Identities=23% Similarity=0.260 Sum_probs=78.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccchhhhcccc----------------------------------
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGR---------------------------------- 1030 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~skIDsI~g~---------------------------------- 1030 (1223)
..+||+||||||||++|+++|..+|.+|+.+++..-+..-|-+...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 5799999999999999999999999999999876422211100000
Q ss_pred --cCCC-----ChhHHHHHHHHHHHHHhccCC----CC--------CCccEEEEeecCCC-----CCCCHHHHcccCcee
Q 000921 1031 --RENP-----GEHEAMRKMKNEFMVNWDGLR----TK--------DKERVLVLAATNRP-----FDLDEAVVRRLPRRL 1086 (1223)
Q Consensus 1031 --R~s~-----~e~e~~~rIl~~LL~~LDgl~----~k--------~~~rVLVIATTNrp-----~~LD~ALlRRFd~~I 1086 (1223)
+... +-+.....+.+.|+..|+.-. .. ....+.||+|+|.. ..+++++++|| ..+
T Consensus 102 A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~-~~i 180 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRL-ITI 180 (262)
T ss_pred HHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhc-EEE
Confidence 0000 001111234444555554311 00 11356799999976 35689999999 789
Q ss_pred eecCCCHHHHHHHHHHHH
Q 000921 1087 MVNLPDAPNREKIIRVIL 1104 (1223)
Q Consensus 1087 ~VplPd~eeR~~ILr~~L 1104 (1223)
.++.|+.++-.+|++...
T Consensus 181 ~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 181 FMDYPDIDTETAILRAKT 198 (262)
T ss_pred ECCCCCHHHHHHHHHHhh
Confidence 999999999999999875
No 141
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.84 E-value=1.2e-08 Score=122.83 Aligned_cols=176 Identities=26% Similarity=0.287 Sum_probs=129.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce-------eE-ee
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------IN-IS 1016 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pf-------I~-Vs 1016 (1223)
..+|+|+.|.+.+...|+..+.. .+-..++||.||.|||||++||-+|+.+++.- .. ..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 46899999999999999998865 23347899999999999999999999986542 10 01
Q ss_pred cccccch---------------hhhccc---------ccCC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1017 MSSITSK---------------VDSMLG---------RREN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1017 ~seL~sk---------------IDsI~g---------~R~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
|-++... ||.+-. ..+. +..|.......|.||..++.- ...|++|.
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP----P~hV~FIl 154 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP----PSHVKFIL 154 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC----ccCeEEEE
Confidence 1111111 333311 0110 134556677888888888774 36799999
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcc-cHHHHHHHccCCcHHHHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV-DLEGIANMADGYSGSDLKNLCVTAAH 1139 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dv-DL~~LA~~TeGySGaDL~~L~~~Aa~ 1139 (1223)
+|..++.++..+++|+ .++.|..-+.++....|..++.++++.-+. -+..+|+..+| +.+|...|+..|..
T Consensus 155 ATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i~ 226 (515)
T COG2812 155 ATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAIA 226 (515)
T ss_pred ecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHHH
Confidence 9999999999999998 678899999999999999999988876443 47888888887 56777777766653
No 142
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.84 E-value=3.8e-08 Score=118.75 Aligned_cols=138 Identities=20% Similarity=0.298 Sum_probs=92.7
Q ss_pred CCCEEEEEcchhhhhccC---------hhHHHHHHHHhccCCCCEEEEEeccCCCcccccCCCCCceeeccCcchhhhcc
Q 000921 703 SSPLIVFVKDIEKSLTGN---------NDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLD 773 (1223)
Q Consensus 703 ~~plIlyi~Dvek~l~~~---------~~~~~~~~~~l~~~~~~~~ii~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1223)
..|.||||+++|+.+.+. .+....|-..++.-..+|+|||+.+..+.
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~------------------------ 372 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDL------------------------ 372 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhh------------------------
Confidence 467777777777765521 12222232333334568999999885221
Q ss_pred ccCCCCcccccccccccHHHHHHHHh--hCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhhHHHHhhhCCCCCC
Q 000921 774 LAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCV 851 (1223)
Q Consensus 774 ~~~~d~~~~~~~~~~~~~~~~~~l~~--rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih~~kml~~~~L~cd 851 (1223)
++ .+|-+ ||...++|.+|+.+.|.+||+ .|+.++.-. .....
T Consensus 373 ------Ld-------------~allR~GRFD~~i~v~lP~~~eR~~Il~----------------~~l~~~~~~-~~~~~ 416 (489)
T CHL00195 373 ------LP-------------LEILRKGRFDEIFFLDLPSLEEREKIFK----------------IHLQKFRPK-SWKKY 416 (489)
T ss_pred ------CC-------------HHHhCCCcCCeEEEeCCcCHHHHHHHHH----------------HHHhhcCCC-ccccc
Confidence 11 14444 899999999999999999999 666543211 12234
Q ss_pred CccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHHhh
Q 000921 852 DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1223)
Q Consensus 852 dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~lq~ 909 (1223)
++..|+..|..|+|++|+.++..|...++... ..++.+++..++..+..
T Consensus 417 dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~---------~~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 417 DIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK---------REFTTDDILLALKQFIP 465 (489)
T ss_pred CHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------CCcCHHHHHHHHHhcCC
Confidence 88899999999999999999999988887421 23677777776665543
No 143
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.83 E-value=6.4e-08 Score=111.82 Aligned_cols=146 Identities=18% Similarity=0.241 Sum_probs=93.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--eeEe
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINI 1015 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el-------g~p--fI~V 1015 (1223)
...|.+|.|.+++++.|.-.+.. .| ..++||+||||||||++|+++|.-+ +.+ +..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~----------~~----~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID----------PG----IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc----------cC----CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 36789999999999988653321 11 2579999999999999999999988 432 2211
Q ss_pred ecc---------cccch------------hhhcccc-----------c---------CCC------ChhHHHHHHHHHHH
Q 000921 1016 SMS---------SITSK------------VDSMLGR-----------R---------ENP------GEHEAMRKMKNEFM 1048 (1223)
Q Consensus 1016 s~s---------eL~sk------------IDsI~g~-----------R---------~s~------~e~e~~~rIl~~LL 1048 (1223)
.+. .+... -|.|+|. . .+. .-+.....+.+.|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Ll 149 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLL 149 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHH
Confidence 110 00000 1112220 0 000 01112234555666
Q ss_pred HHhccC---------CCCCCccEEEEeecCCCC-CCCHHHHcccCceeeecCCCH-HHHHHHHHHHH
Q 000921 1049 VNWDGL---------RTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1104 (1223)
Q Consensus 1049 ~~LDgl---------~~k~~~rVLVIATTNrp~-~LD~ALlRRFd~~I~VplPd~-eeR~~ILr~~L 1104 (1223)
..|+.- ......++++|+|+|..+ .++++++.||...+.++.|.. ++|.+|++...
T Consensus 150 e~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 150 DVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 666432 112346799999999654 589999999999999998876 89999998854
No 144
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.83 E-value=3.3e-08 Score=118.52 Aligned_cols=146 Identities=16% Similarity=0.256 Sum_probs=93.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceeEeecccccch--------------------------hhhcccccCC
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK--------------------------VDSMLGRREN 1033 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el-----g~pfI~Vs~seL~sk--------------------------IDsI~g~R~s 1033 (1223)
..++|||++|+|||+|++|+++++ +..++.+++.+++.. ||++..-.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~-- 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLS-- 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccccc--
Confidence 569999999999999999999965 467788887665433 22221100
Q ss_pred CChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCC---CCHHHHcccC--ceeeecCCCHHHHHHHHHHHHhhcc
Q 000921 1034 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEE 1108 (1223)
Q Consensus 1034 ~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~---LD~ALlRRFd--~~I~VplPd~eeR~~ILr~~L~k~~ 1108 (1223)
+ .+ ....+|...+..+... ++.+||++...|.. +++.+++||. ..+.+..|+.++|.+||+..+...+
T Consensus 220 -~-k~---~~~e~lf~l~N~~~~~--~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g 292 (450)
T PRK14087 220 -Y-KE---KTNEIFFTIFNNFIEN--DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN 292 (450)
T ss_pred -C-CH---HHHHHHHHHHHHHHHc--CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC
Confidence 0 11 1222333333332221 23344444444444 5688888995 5667888999999999999998754
Q ss_pred c---CCcccHHHHHHHccCCcHHHHHHHHHHHHHH
Q 000921 1109 L---ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1140 (1223)
Q Consensus 1109 l---~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~ 1140 (1223)
+ -++.-++.||..+.| ..+.|..+|..+...
T Consensus 293 l~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 293 IKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred CCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 3 234457788888876 667777777766543
No 145
>PRK09087 hypothetical protein; Validated
Probab=98.83 E-value=4.9e-08 Score=107.03 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=100.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccc--------h---hhhcccccCCCChhHHHHHHHHHHHHHhcc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--------K---VDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1053 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~s--------k---IDsI~g~R~s~~e~e~~~rIl~~LL~~LDg 1053 (1223)
.-++||||+|+|||+|++++|...++.++... .+.. . ||.+-... ...+. |...+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~l~iDDi~~~~---~~~~~-------lf~l~n~ 112 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIGSDAANAAAEGPVLIEDIDAGG---FDETG-------LFHLINS 112 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--HcchHHHHhhhcCeEEEECCCCCC---CCHHH-------HHHHHHH
Confidence 35899999999999999999999887766542 1111 0 44442111 11222 2222222
Q ss_pred CCCCCCccEEEEeecCCCCC---CCHHHHcccC--ceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCcH
Q 000921 1054 LRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1127 (1223)
Q Consensus 1054 l~~k~~~rVLVIATTNrp~~---LD~ALlRRFd--~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGySG 1127 (1223)
+. +.++.+||+++..|.. ..+.+++||. ..+++..|+.+.|.+|++..+...++. ++.-++.|+++..
T Consensus 113 ~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~---- 186 (226)
T PRK09087 113 VR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME---- 186 (226)
T ss_pred HH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh----
Confidence 22 1244566666655443 3578998885 788899999999999999999876543 4445788888876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhc
Q 000921 1128 SDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1187 (1223)
Q Consensus 1128 aDL~~L~~~Aa~~aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v 1187 (1223)
++++.+.... .++.... . ...+++|...++++++.+
T Consensus 187 r~~~~l~~~l-----~~L~~~~-------~------------~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 187 RSLFAAQTIV-----DRLDRLA-------L------------ERKSRITRALAAEVLNEM 222 (226)
T ss_pred hhHHHHHHHH-----HHHHHHH-------H------------HhCCCCCHHHHHHHHHhh
Confidence 3554443211 1111000 0 123679999999998865
No 146
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.81 E-value=5e-08 Score=114.78 Aligned_cols=72 Identities=29% Similarity=0.353 Sum_probs=55.7
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
-|.|.+++++.+...+....++..+.....-..++++|||+||||||||++|++||..+++||+.+++..+.
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~ 84 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 84 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceee
Confidence 478999999999887775444433222111133568999999999999999999999999999999987654
No 147
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.72 E-value=2.4e-07 Score=109.24 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=65.8
Q ss_pred hCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhhHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhh
Q 000921 800 LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSH 878 (1223)
Q Consensus 800 rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~ 878 (1223)
||...|+|.+|+.+.|.+||+ .|+.++ .+..+ ++..++..+..|++++|+.++.-|..+
T Consensus 292 Rfd~~I~v~~P~~~~R~~Il~----------------~~~~~~----~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~ 351 (389)
T PRK03992 292 RFDRIIEVPLPDEEGRLEILK----------------IHTRKM----NLADDVDLEELAELTEGASGADLKAICTEAGMF 351 (389)
T ss_pred cCceEEEECCCCHHHHHHHHH----------------HHhccC----CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 788899999999999999998 454322 34443 788899999999999999999999888
Q ss_pred hhhccCCCCCCCCceeecchhHHHHHHHHhh
Q 000921 879 HFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1223)
Q Consensus 879 al~~~~~~~~~~~kl~Is~esl~~~l~~lq~ 909 (1223)
++.+ +.-.|+.++|..++..++.
T Consensus 352 a~~~--------~~~~i~~~d~~~A~~~~~~ 374 (389)
T PRK03992 352 AIRD--------DRTEVTMEDFLKAIEKVMG 374 (389)
T ss_pred HHHc--------CCCCcCHHHHHHHHHHHhc
Confidence 8743 2335889999998888654
No 148
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.71 E-value=9.7e-08 Score=116.24 Aligned_cols=145 Identities=21% Similarity=0.316 Sum_probs=102.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch---------------------------hhhcccccCCCChh
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK---------------------------VDSMLGRRENPGEH 1037 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk---------------------------IDsI~g~R~s~~e~ 1037 (1223)
+-+||+||||-|||+||+.||+++|+.++.|++++-... ||.|-|..
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------ 400 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------ 400 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc------
Confidence 567899999999999999999999999999999873221 34442211
Q ss_pred HHHHHHHHHHHHHhc-------cCCCCCC----------ccEEEEeecCCCCCCCHHHHc--ccCceeeecCCCHHHHHH
Q 000921 1038 EAMRKMKNEFMVNWD-------GLRTKDK----------ERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREK 1098 (1223)
Q Consensus 1038 e~~~rIl~~LL~~LD-------gl~~k~~----------~rVLVIATTNrp~~LD~ALlR--RFd~~I~VplPd~eeR~~ 1098 (1223)
...+..++..+. |-..... =.--||+.||.... |+|+. -|...|+|..|...--.+
T Consensus 401 ---~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 401 ---RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred ---HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHH
Confidence 222333333332 1111000 11358899997655 66664 789999999999988888
Q ss_pred HHHHHHhhcccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 000921 1099 IIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1143 (1223)
Q Consensus 1099 ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~air 1143 (1223)
=|+.++.++++. .|...|+.+|+ ++..||++.++.....+.+
T Consensus 476 RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 476 RLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASN 517 (877)
T ss_pred HHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHh
Confidence 899999888764 56666776666 6677999999888776654
No 149
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.71 E-value=1e-07 Score=109.39 Aligned_cols=121 Identities=15% Similarity=0.182 Sum_probs=82.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccchhhhccccc----C-----------------CC-----Ch-h
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRR----E-----------------NP-----GE-H 1037 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~skIDsI~g~R----~-----------------s~-----~e-~ 1037 (1223)
+.|||.||||||||++|++||..++.+++.|++...+...|-+.... . .+ .+ +
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin 144 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYD 144 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhh
Confidence 67999999999999999999999999999999877655533332110 0 00 00 0
Q ss_pred HHHHHHHHHHHHHhcc---C--CC-----CCCccEEEEeecCCCC------------CCCHHHHcccCceeeecCCCHHH
Q 000921 1038 EAMRKMKNEFMVNWDG---L--RT-----KDKERVLVLAATNRPF------------DLDEAVVRRLPRRLMVNLPDAPN 1095 (1223)
Q Consensus 1038 e~~~rIl~~LL~~LDg---l--~~-----k~~~rVLVIATTNrp~------------~LD~ALlRRFd~~I~VplPd~ee 1095 (1223)
.....+...|...|+. + .. .....+.||||+|... .+++|++.||-..+.++.|+.++
T Consensus 145 ~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~ 224 (327)
T TIGR01650 145 AGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDN 224 (327)
T ss_pred ccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHH
Confidence 0011233333333331 1 10 0123578999999865 36899999998888999999999
Q ss_pred HHHHHHHHHh
Q 000921 1096 REKIIRVILA 1105 (1223)
Q Consensus 1096 R~~ILr~~L~ 1105 (1223)
-.+|+.....
T Consensus 225 E~~Il~~~~~ 234 (327)
T TIGR01650 225 EAAIVLAKAK 234 (327)
T ss_pred HHHHHHhhcc
Confidence 9999987653
No 150
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.70 E-value=8.7e-08 Score=112.82 Aligned_cols=72 Identities=28% Similarity=0.319 Sum_probs=54.7
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
.|+|++++++.+...+....++..+.........+.+|||+||||||||++|++||..+++||+.+++..+.
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhc
Confidence 478999999999888865333332211111112358999999999999999999999999999999987655
No 151
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=4.6e-07 Score=103.55 Aligned_cols=161 Identities=18% Similarity=0.287 Sum_probs=104.6
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------ceeEeec
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------NFINISM 1017 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~--------pfI~Vs~ 1017 (1223)
++|++|.|.+.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+-+ .|+.+..
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 3689999999999999888743 234578999999999999999999998632 2333433
Q ss_pred c-cccchhhhc---cc----c-cCCC------Ch-hHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcc
Q 000921 1018 S-SITSKVDSM---LG----R-RENP------GE-HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRR 1081 (1223)
Q Consensus 1018 s-eL~skIDsI---~g----~-R~s~------~e-~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRR 1081 (1223)
. .-.-++|.+ .. . .... .+ +.......|.||..|+..+ ..+++|.+|+.++.|-+.+++|
T Consensus 68 ~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp----~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 68 INKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP----KGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred ccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCC----CCeEEEEEeCChHhCcHHHHhh
Confidence 1 100112222 11 1 1110 01 1222346678888888743 3456666667889999999999
Q ss_pred cCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcH
Q 000921 1082 LPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1127 (1223)
Q Consensus 1082 Fd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySG 1127 (1223)
+ ..+.|+.|+.++-...++..+.. ..+..+..++..+.|-.+
T Consensus 144 c-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 144 C-QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred c-eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHH
Confidence 9 68999999998887777654431 123345667777766433
No 152
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.70 E-value=2.9e-08 Score=99.34 Aligned_cols=97 Identities=29% Similarity=0.387 Sum_probs=62.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccchhhhccccc------C------------C-----CChhHHHHH
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRR------E------------N-----PGEHEAMRK 1042 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~skIDsI~g~R------~------------s-----~~e~e~~~r 1042 (1223)
+|||+||||||||+||+.+|..++.+++.+.++...+.-|-+.... . . .+-+.....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 4899999999999999999999999999998877544311110000 0 0 011112245
Q ss_pred HHHHHHHHhccCCCC---------CCc------cEEEEeecCCCC----CCCHHHHccc
Q 000921 1043 MKNEFMVNWDGLRTK---------DKE------RVLVLAATNRPF----DLDEAVVRRL 1082 (1223)
Q Consensus 1043 Il~~LL~~LDgl~~k---------~~~------rVLVIATTNrp~----~LD~ALlRRF 1082 (1223)
++..|+..++.-.-. ... .+.||||+|... .+++++++||
T Consensus 81 v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 81 VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 666666666542111 011 389999999998 8999999998
No 153
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.69 E-value=3.5e-07 Score=106.25 Aligned_cols=143 Identities=18% Similarity=0.249 Sum_probs=92.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------Ccee----
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFI---- 1013 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg-------~pfI---- 1013 (1223)
...|.+|.|++++|..|.-.+.. ....||||.||+|||||++|++++..+. .||.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 45789999999999999765543 1236899999999999999999987662 2332
Q ss_pred -----------------------------Eeecccccchhhhcccc--------------------cCCCC-----h-hH
Q 000921 1014 -----------------------------NISMSSITSKVDSMLGR--------------------RENPG-----E-HE 1038 (1223)
Q Consensus 1014 -----------------------------~Vs~seL~skIDsI~g~--------------------R~s~~-----e-~e 1038 (1223)
.+.... .-|.++|. +.+.+ + +.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~---ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInr 155 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGA---TEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNL 155 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCC---chhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHh
Confidence 110000 01222220 00001 1 11
Q ss_pred HHHHHHHHHHHHhcc---------CCCCCCccEEEEeecCCCC-CCCHHHHcccCceeeecCCC-HHHHHHHHHHHH
Q 000921 1039 AMRKMKNEFMVNWDG---------LRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPD-APNREKIIRVIL 1104 (1223)
Q Consensus 1039 ~~~rIl~~LL~~LDg---------l~~k~~~rVLVIATTNrp~-~LD~ALlRRFd~~I~VplPd-~eeR~~ILr~~L 1104 (1223)
....+...|+..|+. ....-..++++|+|.|..+ .+.++++.||...+.+..|+ .+.|.+|++...
T Consensus 156 L~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 156 LDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred CCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 122344455555532 2222345789999888655 69999999999999999997 599999999864
No 154
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.68 E-value=1.8e-07 Score=107.64 Aligned_cols=121 Identities=26% Similarity=0.394 Sum_probs=79.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch--------hhhc---ccc-------cCCC--------ChhH
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--------VDSM---LGR-------RENP--------GEHE 1038 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk--------IDsI---~g~-------R~s~--------~e~e 1038 (1223)
..+||.||||||||+||+++|..++.+|+.|.+..-+.. ++.. .+. -... .-..
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 579999999999999999999999999999999753322 1110 000 0000 0001
Q ss_pred HHHHHHHHHHHHhcc-------CC-CCCCccEEEEeecC-----CCCCCCHHHHcccCceeeecCC-CHHHHHHHHHHHH
Q 000921 1039 AMRKMKNEFMVNWDG-------LR-TKDKERVLVLAATN-----RPFDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVIL 1104 (1223)
Q Consensus 1039 ~~~rIl~~LL~~LDg-------l~-~k~~~rVLVIATTN-----rp~~LD~ALlRRFd~~I~VplP-d~eeR~~ILr~~L 1104 (1223)
+...+.+.|+..|+. .. -.-...++||+|+| ....|++|+++||...++++.| ...+...++....
T Consensus 124 a~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 124 APPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred CCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 112344445555443 22 22336789999999 6677899999999999999999 5555555555544
Q ss_pred h
Q 000921 1105 A 1105 (1223)
Q Consensus 1105 ~ 1105 (1223)
.
T Consensus 204 ~ 204 (329)
T COG0714 204 G 204 (329)
T ss_pred c
Confidence 3
No 155
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.66 E-value=7e-07 Score=101.98 Aligned_cols=65 Identities=40% Similarity=0.623 Sum_probs=50.3
Q ss_pred ccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CceeEeecccccc
Q 000921 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITS 1022 (1223)
Q Consensus 949 dDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg--~pfI~Vs~seL~s 1022 (1223)
+.+.|+.+..+..--++.+ .+.+ ....++||+.||||||||+||-+||+++| .||+.++++++++
T Consensus 39 dG~VGQ~~AReAaGvIv~m-------ik~g--k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKM-------IKQG--KMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred CcccchHHHHHhhhHHHHH-------HHhC--cccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 4678888887775444433 1112 22358999999999999999999999996 8999999999765
No 156
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.66 E-value=1.8e-07 Score=102.00 Aligned_cols=143 Identities=22% Similarity=0.357 Sum_probs=86.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceeEeecccccch------------------------hhhcccccCCCC
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK------------------------VDSMLGRRENPG 1035 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el-----g~pfI~Vs~seL~sk------------------------IDsI~g~R~s~~ 1035 (1223)
..++||||+|+|||+|..|+++++ +..++.+++.++... ||.+-.-. +
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~---~ 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLA---G 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGT---T
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhc---C
Confidence 458999999999999999999885 566888887665432 33331111 1
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCC---CCHHHHcccCc--eeeecCCCHHHHHHHHHHHHhhcccC
Q 000921 1036 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAKEELA 1110 (1223)
Q Consensus 1036 e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~---LD~ALlRRFd~--~I~VplPd~eeR~~ILr~~L~k~~l~ 1110 (1223)
.. .+..+|...++.+... ++.+||++...|.. +++.+++||.. .+.+..|+.+.|.+|++......++.
T Consensus 112 -~~---~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~ 185 (219)
T PF00308_consen 112 -KQ---RTQEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE 185 (219)
T ss_dssp -HH---HHHHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--
T ss_pred -ch---HHHHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 11 1223333344433322 34566666555554 46788888854 77888999999999999999887655
Q ss_pred -CcccHHHHHHHccCCcHHHHHHHHHHH
Q 000921 1111 -SDVDLEGIANMADGYSGSDLKNLCVTA 1137 (1223)
Q Consensus 1111 -~dvDL~~LA~~TeGySGaDL~~L~~~A 1137 (1223)
++.-++.|++...+ +.++|..++..-
T Consensus 186 l~~~v~~~l~~~~~~-~~r~L~~~l~~l 212 (219)
T PF00308_consen 186 LPEEVIEYLARRFRR-DVRELEGALNRL 212 (219)
T ss_dssp S-HHHHHHHHHHTTS-SHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 33346778887763 566666666544
No 157
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=7.2e-07 Score=104.46 Aligned_cols=183 Identities=20% Similarity=0.274 Sum_probs=107.5
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----eeEeecccccch-
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-----FINISMSSITSK- 1023 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p-----fI~Vs~seL~sk- 1023 (1223)
.+.+-++.++++...+.-.+ ++ .. |.++++|||||||||.+++.++.++.-. ++.|+|-.+-..
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~-------~~--~~-p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPAL-------RG--ER-PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHh-------cC--CC-CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 47888999999988765433 22 22 3569999999999999999999998544 889998764433
Q ss_pred ------hhhcccccCCC-ChhHHHHHHHHHH----------HHHhc--------------cCCCCCCccEEEEeecCCCC
Q 000921 1024 ------VDSMLGRRENP-GEHEAMRKMKNEF----------MVNWD--------------GLRTKDKERVLVLAATNRPF 1072 (1223)
Q Consensus 1024 ------IDsI~g~R~s~-~e~e~~~rIl~~L----------L~~LD--------------gl~~k~~~rVLVIATTNrp~ 1072 (1223)
++.+......+ ...+....+.+.+ |.++| ........+|.||+.+|..+
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 12221111000 0111111111111 11111 11111246789999998764
Q ss_pred ---CCCHHHHccc-CceeeecCCCHHHHHHHHHHHHhhc---ccCCcccHHHHHHHccCCcHHHH---HHHHHHHHHHHH
Q 000921 1073 ---DLDEAVVRRL-PRRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGYSGSDL---KNLCVTAAHCPI 1142 (1223)
Q Consensus 1073 ---~LD~ALlRRF-d~~I~VplPd~eeR~~ILr~~L~k~---~l~~dvDL~~LA~~TeGySGaDL---~~L~~~Aa~~ai 1142 (1223)
.+|+.+.++| ...|.||+.+.+|-..|++.-.... ....+.-++.+|..+. ..++|. -.+|+.|+..|-
T Consensus 168 ~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a-~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 168 FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA-AESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHH
Confidence 6788888866 5568999999999999999876542 1112222444443333 222243 345666665554
Q ss_pred H
Q 000921 1143 R 1143 (1223)
Q Consensus 1143 r 1143 (1223)
+
T Consensus 247 ~ 247 (366)
T COG1474 247 R 247 (366)
T ss_pred h
Confidence 4
No 158
>PHA02244 ATPase-like protein
Probab=98.65 E-value=3e-07 Score=106.96 Aligned_cols=112 Identities=15% Similarity=0.180 Sum_probs=67.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccchhhhc--------cc-------ccCCC-----ChhHHHHHHH
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSM--------LG-------RRENP-----GEHEAMRKMK 1044 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~skIDsI--------~g-------~R~s~-----~e~e~~~rIl 1044 (1223)
..|||+||||||||+||++||..++.||+.++.- .+..+.. +. .+... .-......+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq 197 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEAL 197 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHHHH
Confidence 4699999999999999999999999999988742 2111110 00 00000 0000011122
Q ss_pred HHHHHHhccC-------CCCCCccEEEEeecCCC-----------CCCCHHHHcccCceeeecCCCHHHHHHHH
Q 000921 1045 NEFMVNWDGL-------RTKDKERVLVLAATNRP-----------FDLDEAVVRRLPRRLMVNLPDAPNREKII 1100 (1223)
Q Consensus 1045 ~~LL~~LDgl-------~~k~~~rVLVIATTNrp-----------~~LD~ALlRRFd~~I~VplPd~eeR~~IL 1100 (1223)
..|...++.- .-....++.+|+|+|.+ ..|+++++.|| ..|++..|+..+ ..|.
T Consensus 198 ~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~~E-~~i~ 269 (383)
T PHA02244 198 IIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEKIE-HLIS 269 (383)
T ss_pred HHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcHHH-HHHh
Confidence 2333333210 00123568999999973 57899999999 579999998433 3444
No 159
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63 E-value=2.7e-07 Score=89.59 Aligned_cols=106 Identities=40% Similarity=0.679 Sum_probs=67.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccchh--hhccc----------ccC-CC-----ChhHH-HH
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKV--DSMLG----------RRE-NP-----GEHEA-MR 1041 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~skI--DsI~g----------~R~-s~-----~e~e~-~~ 1041 (1223)
...++++||||||||+++++++..+ +.+++.+++....... ..... ... .. .+-.. ..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 3689999999999999999999999 8999999887654431 10000 000 00 01110 01
Q ss_pred HHHHHHHHHhccCCCC--CCccEEEEeecCCCC--CCCHHHHcccCceeeec
Q 000921 1042 KMKNEFMVNWDGLRTK--DKERVLVLAATNRPF--DLDEAVVRRLPRRLMVN 1089 (1223)
Q Consensus 1042 rIl~~LL~~LDgl~~k--~~~rVLVIATTNrp~--~LD~ALlRRFd~~I~Vp 1089 (1223)
.....++..+...... ...++.||++||... .+++.+.+||+.++.++
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 99 GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 2233444444443211 135688899998877 78889999999888776
No 160
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.5e-07 Score=102.88 Aligned_cols=227 Identities=23% Similarity=0.373 Sum_probs=162.3
Q ss_pred hHHHHhhcccCCCccccccccccccchhhhHHHHHhhhhhhhcccccccccCCCCCCCCceeccCCCChhHHHHHHHHHH
Q 000921 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1223)
Q Consensus 435 ~k~~l~~~i~~~~~~~vsfd~FPYylse~Tk~~L~~~~~vHLk~~~~~ky~~~L~~~s~rILLsgpagsEiYqe~LaKAL 514 (1223)
|..-+.-.+|.+.+|.|+|+.-= ==|.++..|-+..-.-|++.++-++ ..|...+.-|||-||+|+ =.-|||||+
T Consensus 73 ~E~~i~s~~v~p~~I~v~f~DIg--gLe~v~~~L~e~VilPlr~pelF~~-g~Ll~p~kGiLL~GPpG~--GKTmlAKA~ 147 (386)
T KOG0737|consen 73 YEKRIASDVVPPSEIGVSFDDIG--GLEEVKDALQELVILPLRRPELFAK-GKLLRPPKGILLYGPPGT--GKTMLAKAI 147 (386)
T ss_pred HHHHhhhcccchhhceeehhhcc--chHHHHHHHHHHHhhcccchhhhcc-cccccCCccceecCCCCc--hHHHHHHHH
Confidence 44556678899999999998621 1378999999999999999988774 456668889999999994 578999999
Q ss_pred HhhccCcEEEEeccCCCCCCCccccccccchhhhhhHHHHHHHHhhhccCCCCccccccccccccccCCCCCCccccccc
Q 000921 515 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 594 (1223)
Q Consensus 515 A~~f~akLLilDs~~l~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 594 (1223)
|+.-||...=++.+.+-+
T Consensus 148 Akeaga~fInv~~s~lt~-------------------------------------------------------------- 165 (386)
T KOG0737|consen 148 AKEAGANFINVSVSNLTS-------------------------------------------------------------- 165 (386)
T ss_pred HHHcCCCcceeeccccch--------------------------------------------------------------
Confidence 999888755444322211
Q ss_pred CcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCceeeeeccCCCCCCCCCCCCCCCCCccccccc
Q 000921 595 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 674 (1223)
Q Consensus 595 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~G~V~l~~e~n~s~kvgV~fd~~~~~~~dl~~~~e~~~~~~~~~~~ 674 (1223)
|++|
T Consensus 166 -----------KWfg----------------------------------------------------------------- 169 (386)
T KOG0737|consen 166 -----------KWFG----------------------------------------------------------------- 169 (386)
T ss_pred -----------hhHH-----------------------------------------------------------------
Confidence 0000
Q ss_pred cccCCCCcchhhHHHHHHHHHHhhcccCCCCEEEEEcchhhhhcc----ChhHHHHHHHHh----ccC----CCCEEEEE
Q 000921 675 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NNDAYGALKSKL----ENL----PSNVVVIG 742 (1223)
Q Consensus 675 l~~d~~~~~~~~k~~i~~L~eVl~s~s~~~plIlyi~Dvek~l~~----~~~~~~~~~~~l----~~~----~~~~~ii~ 742 (1223)
+.+| ++.++|-+.. +-+|-|+||..|+.+|.. --|+....|..| +.| ...|+|+|
T Consensus 170 ---------E~eK-lv~AvFslAs---Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 170 ---------EAQK-LVKAVFSLAS---KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred ---------HHHH-HHHHHHhhhh---hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 0111 1222332222 578999999999998862 234444444444 222 22588888
Q ss_pred eccCCCcccccCCCCCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHH
Q 000921 743 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1223)
Q Consensus 743 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~q 822 (1223)
+.+- | +.+++++-+|+|-.+.|++|+.++|.+|++
T Consensus 237 ATNR-----------------------------P--------------~DlDeAiiRR~p~rf~V~lP~~~qR~kILk-- 271 (386)
T KOG0737|consen 237 ATNR-----------------------------P--------------FDLDEAIIRRLPRRFHVGLPDAEQRRKILK-- 271 (386)
T ss_pred CCCC-----------------------------C--------------ccHHHHHHHhCcceeeeCCCchhhHHHHHH--
Confidence 8872 1 124679999999999999999999999998
Q ss_pred HHHHHHHhhccchhhhHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhhhh
Q 000921 823 LERDVETLKGQSNIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHF 880 (1223)
Q Consensus 823 l~~d~~~l~~~~n~ih~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~al 880 (1223)
. ++.+-.++.+ |+.++|..|..|||.+|..+...|..+..
T Consensus 272 --------------v----iLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~i 312 (386)
T KOG0737|consen 272 --------------V----ILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPI 312 (386)
T ss_pred --------------H----HhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHH
Confidence 1 2344456666 99999999999999999999988876654
No 161
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.62 E-value=1.9e-07 Score=108.44 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=50.1
Q ss_pred Ccc-cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------ceeEeec
Q 000921 947 TFD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 1017 (1223)
Q Consensus 947 tfd-DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------pfI~Vs~ 1017 (1223)
-|+ ++.|+++++.+|.+++.... .|+....+.++|+||||||||+||++||..++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 355 89999999999988776522 122334477899999999999999999999976 8888876
No 162
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.62 E-value=5.3e-07 Score=95.27 Aligned_cols=132 Identities=19% Similarity=0.184 Sum_probs=84.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------eeEeecccccchhhhc-------cccc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKVDSM-------LGRR 1031 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg~p------------------------fI~Vs~seL~skIDsI-------~g~R 1031 (1223)
.+..+|||||+|+|||++|+++|+.+-.. |..+....-.-.+|.+ ....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 45789999999999999999999997432 2322221110112221 1110
Q ss_pred -CCC-------ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHH
Q 000921 1032 -ENP-------GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1103 (1223)
Q Consensus 1032 -~s~-------~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~ 1103 (1223)
... ..+.......+.|+..|+..+ ...++|.+|+.+..+.+++++|+ ..+.++.|+.++...+++..
T Consensus 93 ~~~~~kviiide~~~l~~~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEAAANALLKTLEEPP----PNTLFILITPSPEKLLPTIRSRC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred ccCCeEEEEEechhhhCHHHHHHHHHHhcCCC----CCeEEEEEECChHhChHHHHhhc-EEeeCCCCCHHHHHHHHHHc
Confidence 000 112222335667888887732 34566666777799999999999 68999999999988888776
Q ss_pred HhhcccCCcccHHHHHHHccC
Q 000921 1104 LAKEELASDVDLEGIANMADG 1124 (1223)
Q Consensus 1104 L~k~~l~~dvDL~~LA~~TeG 1124 (1223)
++ .+..++.++..+.|
T Consensus 168 ----gi-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 168 ----GI-SEEAAELLLALAGG 183 (188)
T ss_pred ----CC-CHHHHHHHHHHcCC
Confidence 23 33456777777765
No 163
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=8.6e-07 Score=103.33 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=111.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------ce-----
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NF----- 1012 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------pf----- 1012 (1223)
...+++|.|.+++++.|...+.. .+.+..+||+||+|+|||++|+++|+.+-+ +.
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 35788999999999999988754 223478999999999999999999999854 11
Q ss_pred ------------------eEeecc-ccc----ch---hhhc------ccccCCC---------ChhHHHHHHHHHHHHHh
Q 000921 1013 ------------------INISMS-SIT----SK---VDSM------LGRRENP---------GEHEAMRKMKNEFMVNW 1051 (1223)
Q Consensus 1013 ------------------I~Vs~s-eL~----sk---IDsI------~g~R~s~---------~e~e~~~rIl~~LL~~L 1051 (1223)
+.+..+ +.. .. ||.+ +...... .-+.......+.||..|
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~L 165 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTL 165 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHH
Confidence 111100 000 00 2322 1111000 11222234556788888
Q ss_pred ccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHH
Q 000921 1052 DGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 1131 (1223)
Q Consensus 1052 Dgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~ 1131 (1223)
+..+ .+.++|..|+.++.+.+.+++|+ ..+.++.|+.++-..+|+....... .++..+..+++.+.|-.. ...
T Consensus 166 EEpp----~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~~s~G~pr-~Al 238 (351)
T PRK09112 166 EEPP----ARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQRSKGSVR-KAL 238 (351)
T ss_pred hcCC----CCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHHHcCCCHH-HHH
Confidence 7632 34566666778889999999999 7999999999999999987543322 123336778888877444 334
Q ss_pred HHHHHHH
Q 000921 1132 NLCVTAA 1138 (1223)
Q Consensus 1132 ~L~~~Aa 1138 (1223)
++.....
T Consensus 239 ~ll~~~~ 245 (351)
T PRK09112 239 LLLNYGG 245 (351)
T ss_pred HHHhcCc
Confidence 4444433
No 164
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=8.2e-07 Score=103.97 Aligned_cols=162 Identities=19% Similarity=0.185 Sum_probs=107.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-------------- 1010 (1223)
..++++|+|.+.+++.|...+.. .+.+.++||+||+|+||+++|.++|+.+-+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 46889999999999999988754 234578999999999999999999998721
Q ss_pred --------------------ceeEeecc--ccc----c--hhhhc------ccccCC---------CChhHHHHHHHHHH
Q 000921 1011 --------------------NFINISMS--SIT----S--KVDSM------LGRREN---------PGEHEAMRKMKNEF 1047 (1223)
Q Consensus 1011 --------------------pfI~Vs~s--eL~----s--kIDsI------~g~R~s---------~~e~e~~~rIl~~L 1047 (1223)
.|+.|... +-- . +||.+ +..... ..-+.......+.|
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaL 161 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANAL 161 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHH
Confidence 11222210 100 0 13332 111100 01122223566778
Q ss_pred HHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcH
Q 000921 1048 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1127 (1223)
Q Consensus 1048 L~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySG 1127 (1223)
|..++..+ .+.++|.+|+.++.+.+.+++|+ ..|.|+.|+.++-.++|...... ..+..+..++..+.|--+
T Consensus 162 LK~LEepp----~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~~l~~~s~Gsp~ 233 (365)
T PRK07471 162 LKVLEEPP----ARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRAALAALAEGSVG 233 (365)
T ss_pred HHHHhcCC----CCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHHHHHHHcCCCHH
Confidence 88887643 45677778999999999999998 78999999999998888875422 122223567777877444
No 165
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.58 E-value=1.1e-06 Score=109.57 Aligned_cols=144 Identities=22% Similarity=0.277 Sum_probs=93.5
Q ss_pred cccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------------------
Q 000921 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------- 1008 (1223)
Q Consensus 948 fdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el------------------- 1008 (1223)
|.+|.|.+.++..|.-.+..| ...+|||+|+||||||++|++|+.-+
T Consensus 3 f~~ivGq~~~~~al~~~av~~--------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP--------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC--------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 678999999998876544321 12479999999999999999999887
Q ss_pred ----------------CCceeEeeccc----ccchhhhc--c--ccc----C-----CC------ChhHHHHHHHHHHHH
Q 000921 1009 ----------------GANFINISMSS----ITSKVDSM--L--GRR----E-----NP------GEHEAMRKMKNEFMV 1049 (1223)
Q Consensus 1009 ----------------g~pfI~Vs~se----L~skIDsI--~--g~R----~-----s~------~e~e~~~rIl~~LL~ 1049 (1223)
..||+.+.+.. |++.+|-- + +.. + .. .-+.....+.+.|+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~ 148 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLD 148 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHH
Confidence 35777765542 22222211 0 000 0 00 011222355666676
Q ss_pred HhccC---------CCCCCccEEEEeecCCC-CCCCHHHHcccCceeeecCCC-HHHHHHHHHHHHh
Q 000921 1050 NWDGL---------RTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLPD-APNREKIIRVILA 1105 (1223)
Q Consensus 1050 ~LDgl---------~~k~~~rVLVIATTNrp-~~LD~ALlRRFd~~I~VplPd-~eeR~~ILr~~L~ 1105 (1223)
.|+.- ......+++||+|+|.. ..+.++|+.||+..|.++.|. .++|.+|++..+.
T Consensus 149 ~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 149 AAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred HHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 66521 11123568999999854 468899999999999998774 6788888876543
No 166
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.57 E-value=1.8e-06 Score=105.28 Aligned_cols=155 Identities=22% Similarity=0.243 Sum_probs=88.3
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-ceeEe---ecccccch--
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINI---SMSSITSK-- 1023 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~-pfI~V---s~seL~sk-- 1023 (1223)
+|.|.+.+|..|.-.+..... .....+....-...|||+|+||||||++|++++..+.. .|+.. ++..+...
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~--~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH--KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc--cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 678999998887554432110 00011111111236999999999999999999998743 33321 22222111
Q ss_pred hhhccccc---------CCCC-----hhH-HHHHHHHHHHHHhcc---------CCCCCCccEEEEeecCCCC-------
Q 000921 1024 VDSMLGRR---------ENPG-----EHE-AMRKMKNEFMVNWDG---------LRTKDKERVLVLAATNRPF------- 1072 (1223)
Q Consensus 1024 IDsI~g~R---------~s~~-----e~e-~~~rIl~~LL~~LDg---------l~~k~~~rVLVIATTNrp~------- 1072 (1223)
-|...+.+ ...+ +-+ ........|+..|+. ....-+.++.||||+|..+
T Consensus 282 ~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~ 361 (509)
T smart00350 282 RDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKL 361 (509)
T ss_pred EccCcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCc
Confidence 01010000 0000 111 112233344444432 1112235789999999653
Q ss_pred ------CCCHHHHcccCceeee-cCCCHHHHHHHHHHHHhh
Q 000921 1073 ------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAK 1106 (1223)
Q Consensus 1073 ------~LD~ALlRRFd~~I~V-plPd~eeR~~ILr~~L~k 1106 (1223)
.|++++++|||..+.+ ..|+.+.+.+|.++.+..
T Consensus 362 ~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 362 TPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred ChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 5999999999887654 789999999999987643
No 167
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.57 E-value=1.1e-06 Score=101.90 Aligned_cols=144 Identities=20% Similarity=0.292 Sum_probs=89.7
Q ss_pred CcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcee------
Q 000921 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 1013 (1223)
Q Consensus 947 tfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el-------g~pfI------ 1013 (1223)
.|..|.|.++++..|.-.+..| ...++||.|+||+|||+|+++++.-+ +.+|-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 3778999999998885544221 12589999999999999999999877 33222
Q ss_pred -------Ee------------------ecc------cccchhh--hcc--cc---------cCCCC------hhHHHHHH
Q 000921 1014 -------NI------------------SMS------SITSKVD--SML--GR---------RENPG------EHEAMRKM 1043 (1223)
Q Consensus 1014 -------~V------------------s~s------eL~skID--sI~--g~---------R~s~~------e~e~~~rI 1043 (1223)
.+ +.+ .+++.+| .-+ +. +.+.+ -+.....+
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~ 147 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHL 147 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHH
Confidence 00 000 1222222 100 00 00000 11112244
Q ss_pred HHHHHHHhcc---------CCCCCCccEEEEeecCCCC-CCCHHHHcccCceeeecCCCH-HHHHHHHHHHH
Q 000921 1044 KNEFMVNWDG---------LRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1104 (1223)
Q Consensus 1044 l~~LL~~LDg---------l~~k~~~rVLVIATTNrp~-~LD~ALlRRFd~~I~VplPd~-eeR~~ILr~~L 1104 (1223)
...|+..|+. .....+.++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++...
T Consensus 148 Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 148 VDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred HHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 4555555532 1111235789999998655 699999999999999999975 88999998853
No 168
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.54 E-value=4.3e-08 Score=98.66 Aligned_cols=88 Identities=30% Similarity=0.403 Sum_probs=49.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeecc-cccch----------------------------hhhcccccCCCCh
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SITSK----------------------------VDSMLGRRENPGE 1036 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~s-eL~sk----------------------------IDsI~g~R~s~~e 1036 (1223)
+|||+|+||+|||++|+++|+.+|..|.+|.+. +++-. +|+|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEi--------- 71 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEI--------- 71 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETG---------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeeccc---------
Confidence 489999999999999999999999999999774 33211 2332
Q ss_pred hHHHHHHHHHHHHHhcc-------CCCCCCccEEEEeecCCCC-----CCCHHHHccc
Q 000921 1037 HEAMRKMKNEFMVNWDG-------LRTKDKERVLVLAATNRPF-----DLDEAVVRRL 1082 (1223)
Q Consensus 1037 ~e~~~rIl~~LL~~LDg-------l~~k~~~rVLVIATTNrp~-----~LD~ALlRRF 1082 (1223)
+.+..++...||..|.. ..-.-.+.++||||-|..+ .|+++++.||
T Consensus 72 NrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 72 NRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp GGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred ccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 11223455556655542 1112246689999999876 6899999998
No 169
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=8.5e-07 Score=101.62 Aligned_cols=146 Identities=23% Similarity=0.319 Sum_probs=117.1
Q ss_pred HHHHHHHHhhcccCCCCEEEEEcchhhhhc--------cChhHHHHHHHHhccCCC-----CEEEEEeccCCCcccccCC
Q 000921 689 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 755 (1223)
Q Consensus 689 ~i~~L~eVl~s~s~~~plIlyi~Dvek~l~--------~~~~~~~~~~~~l~~~~~-----~~~ii~s~~~~~~~~~~~~ 755 (1223)
++-+||++..+ +.|-|+||++|+-.=. |..|.-..+-..|..+.| +|.||.+++-.|.
T Consensus 232 lVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~------ 302 (406)
T COG1222 232 LVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI------ 302 (406)
T ss_pred HHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc------
Confidence 48999999988 9999999999998422 556666666666777755 9999999995432
Q ss_pred CCCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHH--hhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhcc
Q 000921 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQIS--RLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQ 833 (1223)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~--~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~ 833 (1223)
||. +|- =||.-+||+.+||+++|.+||+
T Consensus 303 ----------------LDP---------------------ALLRPGR~DRkIEfplPd~~gR~~Il~------------- 332 (406)
T COG1222 303 ----------------LDP---------------------ALLRPGRFDRKIEFPLPDEEGRAEILK------------- 332 (406)
T ss_pred ----------------cCh---------------------hhcCCCcccceeecCCCCHHHHHHHHH-------------
Confidence 331 111 2677899999999999999999
Q ss_pred chhhhHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHHh
Q 000921 834 SNIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 908 (1223)
Q Consensus 834 ~n~ih~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~lq 908 (1223)
||+++|.- ..+ ||+.|+..+..++||+|..++.-|=-||+ +..+.+|+++||..|.+.+.
T Consensus 333 ---IHtrkM~l----~~dvd~e~la~~~~g~sGAdlkaictEAGm~Ai--------R~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 333 ---IHTRKMNL----ADDVDLELLARLTEGFSGADLKAICTEAGMFAI--------RERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred ---HHhhhccC----ccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHH--------HhccCeecHHHHHHHHHHHH
Confidence 99998854 334 99999999999999999999999888888 35577899999998887754
No 170
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=2.4e-06 Score=98.67 Aligned_cols=138 Identities=12% Similarity=0.102 Sum_probs=92.6
Q ss_pred CcccccC-cHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000921 947 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 1011 (1223)
Q Consensus 947 tfdDIgG-le~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p-------------- 1011 (1223)
.|+.|.| .+.+++.|+..+.. .+.+..+|||||+|+|||++|+++|+.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4778877 88899999887754 2345789999999999999999999987321
Q ss_pred ----------eeEeecccccchhhhc------ccccCC-C--------ChhHHHHHHHHHHHHHhccCCCCCCccEEEEe
Q 000921 1012 ----------FINISMSSITSKVDSM------LGRREN-P--------GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1066 (1223)
Q Consensus 1012 ----------fI~Vs~seL~skIDsI------~g~R~s-~--------~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIA 1066 (1223)
+..+....-.-++|.+ +..... + +.+.......|.||..|+..+ ..+++|.
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp----~~~~~Il 145 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS----GGTTAIL 145 (329)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC----CCceEEE
Confidence 3333221111113322 110000 0 112223346778888888743 4566667
Q ss_pred ecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHH
Q 000921 1067 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1102 (1223)
Q Consensus 1067 TTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~ 1102 (1223)
+|+.+..|-+++++|+ ..++|+.|+.++-.++|+.
T Consensus 146 ~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 146 LTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 8888889999999999 7899999999887666653
No 171
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.44 E-value=1.9e-06 Score=99.77 Aligned_cols=67 Identities=39% Similarity=0.560 Sum_probs=48.9
Q ss_pred cccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CceeEeecccccch
Q 000921 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSK 1023 (1223)
Q Consensus 948 fdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg--~pfI~Vs~seL~sk 1023 (1223)
.+.+.|+.++.+..--++.+ + ..+ ....++|||.||||||||+||-+||+++| .||+.++++++++.
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-I------k~~--K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~ 91 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-I------KEG--KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSS 91 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-H------HTT----TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BT
T ss_pred cccccChHHHHHHHHHHHHH-H------hcc--cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeec
Confidence 45889999999888766655 1 111 11348999999999999999999999996 89999999997653
No 172
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.44 E-value=1.8e-06 Score=104.87 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=60.8
Q ss_pred hCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhhHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhh
Q 000921 800 LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSH 878 (1223)
Q Consensus 800 rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~ 878 (1223)
||..+|+|.+|+.+.|.+||+ .|+.+ ..+..+ ++..++..+..|++++|+.++..|...
T Consensus 215 Rfd~~i~i~~Pd~~~R~~il~----------------~~l~~----~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~ 274 (495)
T TIGR01241 215 RFDRQVVVDLPDIKGREEILK----------------VHAKN----KKLAPDVDLKAVARRTPGFSGADLANLLNEAALL 274 (495)
T ss_pred cceEEEEcCCCCHHHHHHHHH----------------HHHhc----CCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999 34332 223233 788899999999999999999987665
Q ss_pred hhhccCCCCCCCCceeecchhHHHHHHHH
Q 000921 879 HFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1223)
Q Consensus 879 al~~~~~~~~~~~kl~Is~esl~~~l~~l 907 (1223)
+..+ ++..|+.+++..+++.+
T Consensus 275 a~~~--------~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 275 AARK--------NKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHc--------CCCCCCHHHHHHHHHHH
Confidence 5432 23457888888877764
No 173
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=3e-06 Score=97.41 Aligned_cols=163 Identities=13% Similarity=0.213 Sum_probs=107.4
Q ss_pred CcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------
Q 000921 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------- 1011 (1223)
Q Consensus 947 tfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p--------------- 1011 (1223)
.|++|.|.+.+++.|...+.. .+-+.++||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 488999999999999998854 2234699999999999999999999987321
Q ss_pred ---eeEeecc-----cc--------------------cchhhhc---ccccCC-C-------ChhHH-HHHHHHHHHHHh
Q 000921 1012 ---FINISMS-----SI--------------------TSKVDSM---LGRREN-P-------GEHEA-MRKMKNEFMVNW 1051 (1223)
Q Consensus 1012 ---fI~Vs~s-----eL--------------------~skIDsI---~g~R~s-~-------~e~e~-~~rIl~~LL~~L 1051 (1223)
++.+.+. .. ++.|..| +..... + .+.+. .....|.||..|
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~L 148 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTL 148 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHH
Confidence 1222221 00 0012222 111100 0 01122 234667788888
Q ss_pred ccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHH
Q 000921 1052 DGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDL 1130 (1223)
Q Consensus 1052 Dgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL 1130 (1223)
+..+ +.++|.+|+.++.|-+.+++|+ ..+.|+.|+.++-.++|........ .+.++..++..+.|--+.-+
T Consensus 149 EEPp-----~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~a~Gs~~~al 219 (314)
T PRK07399 149 EEPG-----NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLALAQGSPGAAI 219 (314)
T ss_pred hCCC-----CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHHcCCCHHHHH
Confidence 8743 2356667778999999999999 7899999999999988887643221 12235778888887544333
No 174
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.41 E-value=4.1e-07 Score=107.42 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=70.8
Q ss_pred ceeeecceeEEccCCccceeecCCC--CCccceEEEEeecCCcceEEEEEecCCceEEEc--CeecCCCceEEeeCCCEE
Q 000921 146 HLSMTGAVFTVGHNRQCDLYLKDPS--ISKNLCRLRRIENGGPSGALLEITGGKGEVEVN--GNVHPKDSQVVLRGGDEL 221 (1223)
Q Consensus 146 ~~~i~~~~~tvG~~~~cd~~l~d~~--~s~~~C~l~~~~~~g~~~a~LE~~~~~G~v~vN--g~~~~k~~~~~L~~GDEv 221 (1223)
.+.+....++|||+..||+.+.|+. +|..||+|... +|. .+|+|.|+||| +|| |..+.++..+.|+.||+|
T Consensus 18 ~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~g~--~~l~DlStNGT-~VN~sg~~l~~~~~~~L~~GD~I 92 (396)
T TIGR03354 18 QKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--DGA--YLLTDLSTNGV-FLNGSGSPLGRGNPVRLEQGDRL 92 (396)
T ss_pred EEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--CCE--EEEEECCCCCe-EECCCCCCCCCCCceEcCCCCEE
Confidence 5667778899999999999999999 99999999965 343 78999988999 799 999999999999999999
Q ss_pred EEccCCCeeEE
Q 000921 222 VFSPSGKHSYI 232 (1223)
Q Consensus 222 ~f~~~~~~ayi 232 (1223)
.|+...-..++
T Consensus 93 ~iG~~~lrv~~ 103 (396)
T TIGR03354 93 RLGDYEIRVSL 103 (396)
T ss_pred EECCEEEEEEe
Confidence 99876444443
No 175
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.40 E-value=1.3e-06 Score=98.70 Aligned_cols=135 Identities=19% Similarity=0.300 Sum_probs=88.6
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 1009 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg-------------------- 1009 (1223)
++.+.+.+...+...+.. .+ ..+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------SG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------cC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 455666677777666542 11 1234799999999999999999999997
Q ss_pred ----CceeEeecccccch---hh---hcc---cccC---CC-----Ch-hHHHHHHHHHHHHHhccCCCCCCccEEEEee
Q 000921 1010 ----ANFINISMSSITSK---VD---SML---GRRE---NP-----GE-HEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1067 (1223)
Q Consensus 1010 ----~pfI~Vs~seL~sk---ID---sI~---g~R~---s~-----~e-~e~~~rIl~~LL~~LDgl~~k~~~rVLVIAT 1067 (1223)
-.|+.+++++.... +| .+. .... .. .+ ........+.++..+..- ..+..+|.+
T Consensus 70 ~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep----~~~~~~il~ 145 (325)
T COG0470 70 AGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP----PKNTRFILI 145 (325)
T ss_pred hcCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC----CCCeEEEEE
Confidence 57888888775542 22 111 1111 10 11 122234556777777653 356788999
Q ss_pred cCCCCCCCHHHHcccCceeeecCCCHHHHHHHHH
Q 000921 1068 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 1101 (1223)
Q Consensus 1068 TNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr 1101 (1223)
||+++.+-+.+++|+ ..+.|++|+...+....+
T Consensus 146 ~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 146 TNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred cCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 999999999999998 678887765555444443
No 176
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.40 E-value=8e-06 Score=98.14 Aligned_cols=137 Identities=19% Similarity=0.226 Sum_probs=78.6
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--ceeEee-----cccccc
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINIS-----MSSITS 1022 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~--pfI~Vs-----~seL~s 1022 (1223)
.|.|-+++++.+...+.. ...|||+||||||||++|++||..++. +|..+. ++++++
T Consensus 21 ~i~gre~vI~lll~aala----------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHcc----------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 456777777777654421 257999999999999999999998753 444322 223333
Q ss_pred hh--hhcc--cc--cCCC------------ChhHHHHHHHHHHHHHhccCC-------CCCCccEEEEeecCCCCC---C
Q 000921 1023 KV--DSML--GR--RENP------------GEHEAMRKMKNEFMVNWDGLR-------TKDKERVLVLAATNRPFD---L 1074 (1223)
Q Consensus 1023 kI--DsI~--g~--R~s~------------~e~e~~~rIl~~LL~~LDgl~-------~k~~~rVLVIATTNrp~~---L 1074 (1223)
.+ ...- +. +... .-......+.+.||..|..-. .+-+.+++|+|| |.... .
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LPE~g~~ 163 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELPEADSS 163 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCcccCCc
Confidence 21 0000 00 0000 011222456677777773211 111234445444 63221 2
Q ss_pred CHHHHcccCceeeecCCC-HHHHHHHHHHH
Q 000921 1075 DEAVVRRLPRRLMVNLPD-APNREKIIRVI 1103 (1223)
Q Consensus 1075 D~ALlRRFd~~I~VplPd-~eeR~~ILr~~ 1103 (1223)
.+++..||-..+.+|.|+ .++..+||...
T Consensus 164 leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 164 LEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred hHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 348999998899999997 46667787764
No 177
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.8e-05 Score=100.54 Aligned_cols=113 Identities=24% Similarity=0.303 Sum_probs=74.7
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch-
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 1023 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~--PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk- 1023 (1223)
.|+|++++...|-+.|... +.|+.+ |...+||.||.|+|||-||+|+|..+ .-.||.|++++++.-
T Consensus 563 ~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 5788999999998888762 223333 66789999999999999999999988 457999999975541
Q ss_pred --------------hhhccc---ccCC-----CChhHHHHHHHHHHHHHhccCCCCC-------CccEEEEeecCC
Q 000921 1024 --------------VDSMLG---RREN-----PGEHEAMRKMKNEFMVNWDGLRTKD-------KERVLVLAATNR 1070 (1223)
Q Consensus 1024 --------------IDsI~g---~R~s-----~~e~e~~~rIl~~LL~~LDgl~~k~-------~~rVLVIATTNr 1070 (1223)
.|.|.. ++.. ..-..+...+++.|+..+|.-.-.+ -++++||+|+|.
T Consensus 635 kligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred hccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 111110 0000 0111223356677777777544332 246899999874
No 178
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.40 E-value=1.1e-06 Score=92.66 Aligned_cols=89 Identities=27% Similarity=0.366 Sum_probs=62.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC----ceeEeecccccc----h--------------------------hhhcc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITS----K--------------------------VDSML 1028 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg~----pfI~Vs~seL~s----k--------------------------IDsI~ 1028 (1223)
|...+||.||+|||||.||++||..+.. +++.++++++.. . ||.+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 5568999999999999999999999997 999999998776 2 33333
Q ss_pred cccCCCChhHHHHHHHHHHHHHhccCCCC-------CCccEEEEeecCCCC
Q 000921 1029 GRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRPF 1072 (1223)
Q Consensus 1029 g~R~s~~e~e~~~rIl~~LL~~LDgl~~k-------~~~rVLVIATTNrp~ 1072 (1223)
.. ...+.+..-..+.+.||..|++-.-. +-.++++|+|+|--.
T Consensus 82 ~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 32 22233333346788888888753221 125689999999644
No 179
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.40 E-value=7.6e-06 Score=90.54 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=66.5
Q ss_pred HHHcccCceeeecCCCHHHHHHHHHHHHhhccc-----CCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1077 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-----ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1151 (1223)
Q Consensus 1077 ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l-----~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek~kk 1151 (1223)
.+.+|+...++++..+.++...++...+...+. -.+..++.|++.|.|+... |..+|..|...+..+
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~------- 249 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLE------- 249 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHc-------
Confidence 466688889999999999999999988865331 2344688899999998654 999998887766553
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcC
Q 000921 1152 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1188 (1223)
Q Consensus 1152 ~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~ 1188 (1223)
....|+.+++..++..++
T Consensus 250 -------------------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 -------------------EKREIGGEEVREVIAEID 267 (269)
T ss_pred -------------------CCCCCCHHHHHHHHHHhh
Confidence 335799999999998875
No 180
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.40 E-value=1.7e-06 Score=102.94 Aligned_cols=46 Identities=33% Similarity=0.502 Sum_probs=34.8
Q ss_pred cccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000921 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1223)
Q Consensus 948 fdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg 1009 (1223)
++++.+.++..+.+...+.. .+.++|+||||||||++|+++|..+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~----------------~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----------------KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----------------CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 45666666666666544321 26899999999999999999999884
No 181
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.39 E-value=5.1e-06 Score=98.06 Aligned_cols=145 Identities=21% Similarity=0.308 Sum_probs=89.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCceeEeecccccch-----------------------hhhcccccCCCCh
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK-----------------------VDSMLGRRENPGE 1036 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el-----g~pfI~Vs~seL~sk-----------------------IDsI~g~R~s~~e 1036 (1223)
.-++||||.|.|||+|++|+++++ +.-++.++...++.. ||+|---.+....
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~~ 193 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKERT 193 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChhH
Confidence 459999999999999999999988 334667776654321 3333111111011
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCC---CHHHHcccCc--eeeecCCCHHHHHHHHHHHHhhcccC-
Q 000921 1037 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL---DEAVVRRLPR--RLMVNLPDAPNREKIIRVILAKEELA- 1110 (1223)
Q Consensus 1037 ~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~L---D~ALlRRFd~--~I~VplPd~eeR~~ILr~~L~k~~l~- 1110 (1223)
.+..-.+.|.+. . +.+-+|+.+-..|..+ .+.|++||.. .+.+..|+.+.|..||+......++.
T Consensus 194 qeefFh~FN~l~-------~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i 264 (408)
T COG0593 194 QEEFFHTFNALL-------E--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEI 264 (408)
T ss_pred HHHHHHHHHHHH-------h--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCC
Confidence 222222333332 1 2334555555556554 4889999955 55678999999999999977665544
Q ss_pred CcccHHHHHHHccCCcHHHHHHHHHHHHH
Q 000921 1111 SDVDLEGIANMADGYSGSDLKNLCVTAAH 1139 (1223)
Q Consensus 1111 ~dvDL~~LA~~TeGySGaDL~~L~~~Aa~ 1139 (1223)
++.-+..||.+.. -+.++|..++.....
T Consensus 265 ~~ev~~~la~~~~-~nvReLegaL~~l~~ 292 (408)
T COG0593 265 PDEVLEFLAKRLD-RNVRELEGALNRLDA 292 (408)
T ss_pred CHHHHHHHHHHhh-ccHHHHHHHHHHHHH
Confidence 3444677777765 255566555544443
No 182
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.39 E-value=3.2e-06 Score=112.01 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=103.9
Q ss_pred HHHHHHHHHhhcccCCCCEEEEEcchhhhhccChh--HHHHHHHHhccC-----CCCEEEEEeccCCCcccccCCCCCce
Q 000921 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGNND--AYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLL 760 (1223)
Q Consensus 688 ~~i~~L~eVl~s~s~~~plIlyi~Dvek~l~~~~~--~~~~~~~~l~~~-----~~~~~ii~s~~~~~~~~~~~~~~~~~ 760 (1223)
.-|..+|+.+.. ..|-||||++|+.+-....+ ..+.|-..|+.. ..+|||||++..+|
T Consensus 1719 ~rIr~lFelARk---~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD------------ 1783 (2281)
T CHL00206 1719 FYITLQFELAKA---MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQ------------ 1783 (2281)
T ss_pred HHHHHHHHHHHH---CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcc------------
Confidence 347888888876 78999999999994332221 234443444432 23799999988432
Q ss_pred eeccCcchhhhccccCCCCcccccccccccHHHHHHHHh--hCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhh
Q 000921 761 FTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIIS 838 (1223)
Q Consensus 761 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~--rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih 838 (1223)
.+| .+|-+ ||.-+|+|.+|+..+|..++...+ |
T Consensus 1784 ------------------~LD-------------PALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl--------------~ 1818 (2281)
T CHL00206 1784 ------------------KVD-------------PALIAPNKLNTCIKIRRLLIPQQRKHFFTLS--------------Y 1818 (2281)
T ss_pred ------------------cCC-------------HhHcCCCCCCeEEEeCCCCchhHHHHHHHHH--------------h
Confidence 222 25665 899999999999999988887111 1
Q ss_pred HHHHhhhCCCC--CCCccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHH
Q 000921 839 IRSVLSRNGLD--CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1223)
Q Consensus 839 ~~kml~~~~L~--cddL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~l 907 (1223)
++.+ .++ +.++..+|..|..|+||+|+.|+.-|+..+..+ ++-.|+.+++..|+...
T Consensus 1819 tkg~----~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq--------~ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1819 TRGF----HLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQ--------KKSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred hcCC----CCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc--------CCCccCHHHHHHHHHHH
Confidence 1111 122 236888999999999999999999999998853 24557888888887764
No 183
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.34 E-value=4.6e-06 Score=103.66 Aligned_cols=51 Identities=31% Similarity=0.441 Sum_probs=43.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p 1011 (1223)
..-|+++.|.+++++.++..+.. ..+++|+||||||||++|+++|..++..
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 35678999999999999887753 1479999999999999999999999654
No 184
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.8e-06 Score=94.10 Aligned_cols=72 Identities=29% Similarity=0.344 Sum_probs=55.6
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
-|+|.++.|+.+.-.+....++..+-....-...|++||+.||.|+|||-+||.||+-.++||+.|-+..+.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfT 87 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFT 87 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeee
Confidence 468999999988776665444433333222234569999999999999999999999999999999887644
No 185
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=6.8e-06 Score=95.10 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=90.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC------------------------ceeEeecccc--cchhhhc-------cc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAGA------------------------NFINISMSSI--TSKVDSM-------LG 1029 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg~------------------------pfI~Vs~seL--~skIDsI-------~g 1029 (1223)
.+.++||+||+|+|||++|+++|+.+-+ .++.+....- .-+||.+ .-
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999999854 2344433210 0113322 11
Q ss_pred c-cCC-------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHH
Q 000921 1030 R-REN-------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 1101 (1223)
Q Consensus 1030 ~-R~s-------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr 1101 (1223)
. ... ...+.......|.||..|+.-+ .++++|.+|+.++.|.+.+++|+ ..+.|+.|+.++-.+.|.
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp----~~~~fiL~t~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~L~ 175 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS----GDTVLLLISHQPSRLLPTIKSRC-QQQACPLPSNEESLQWLQ 175 (328)
T ss_pred ccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC----CCeEEEEEECChhhCcHHHHhhc-eeeeCCCcCHHHHHHHHH
Confidence 0 000 0112223457788898888843 56788899999999999999999 569999999998877776
Q ss_pred HHHhhcccCCcccHHHHHHHccCCcH
Q 000921 1102 VILAKEELASDVDLEGIANMADGYSG 1127 (1223)
Q Consensus 1102 ~~L~k~~l~~dvDL~~LA~~TeGySG 1127 (1223)
..... ..+.+...++.++.|--+
T Consensus 176 ~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 176 QALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred Hhccc---CChHHHHHHHHHcCCCHH
Confidence 54311 223345566777777444
No 186
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.28 E-value=1.4e-06 Score=94.31 Aligned_cols=46 Identities=41% Similarity=0.586 Sum_probs=36.2
Q ss_pred CcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000921 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 947 tfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
.|.||.|++.+|..|.-...- ..++||+||||||||++|++++.-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG----------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG----------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC----------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC----------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 378999999999999765432 2689999999999999999999765
No 187
>PRK08116 hypothetical protein; Validated
Probab=98.26 E-value=2.9e-06 Score=95.52 Aligned_cols=38 Identities=39% Similarity=0.643 Sum_probs=33.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccccc
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~ 1021 (1223)
..|++|||+||||||+||.|||+++ +.+++.++.++++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll 154 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL 154 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 3689999999999999999999986 7888888876644
No 188
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.25 E-value=1.6e-05 Score=98.66 Aligned_cols=122 Identities=18% Similarity=0.269 Sum_probs=80.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CceeEeecc----cccchhh--h-cc-cc---------cCCC------ChhH
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS----SITSKVD--S-ML-GR---------RENP------GEHE 1038 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~elg--~pfI~Vs~s----eL~skID--s-I~-g~---------R~s~------~e~e 1038 (1223)
..+|||.|+||||||++|++|+..+. .||+.+... .+++.+| . +. +. ..+. .-+.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 36899999999999999999999875 468887742 2333332 1 10 00 0000 1112
Q ss_pred HHHHHHHHHHHHhccC---------CCCCCccEEEEeecCCCC---CCCHHHHcccCceeeec-CCCHHHHHHHHHHHHh
Q 000921 1039 AMRKMKNEFMVNWDGL---------RTKDKERVLVLAATNRPF---DLDEAVVRRLPRRLMVN-LPDAPNREKIIRVILA 1105 (1223)
Q Consensus 1039 ~~~rIl~~LL~~LDgl---------~~k~~~rVLVIATTNrp~---~LD~ALlRRFd~~I~Vp-lPd~eeR~~ILr~~L~ 1105 (1223)
....+.+.|+..|+.- ......++.||+|+|..+ .|.++++.||...|.+. +|+..+|.+|++.++.
T Consensus 96 l~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 96 LDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERC 175 (589)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHH
Confidence 2234556666666531 111224688999999875 79999999999988775 5678889999998763
No 189
>CHL00176 ftsH cell division protein; Validated
Probab=98.23 E-value=1.5e-05 Score=99.46 Aligned_cols=135 Identities=24% Similarity=0.365 Sum_probs=90.7
Q ss_pred CCCCEEEEEcchhhhhc--------cChhHHHHHHHHhccC---C--CCEEEEEeccCCCcccccCCCCCceeeccCcch
Q 000921 702 KSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENL---P--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQ 768 (1223)
Q Consensus 702 ~~~plIlyi~Dvek~l~--------~~~~~~~~~~~~l~~~---~--~~~~ii~s~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1223)
+..|.||||+|++.+.. ++.+.-..|...|..+ . .+|+||++.+..+.
T Consensus 273 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~------------------- 333 (638)
T CHL00176 273 ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI------------------- 333 (638)
T ss_pred cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh-------------------
Confidence 36788999999998642 2333333344444333 2 37889998874211
Q ss_pred hhhccccCCCCcccccccccccHHHHHHHHh--hCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhhHHHHhhhC
Q 000921 769 TALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRN 846 (1223)
Q Consensus 769 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~--rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih~~kml~~~ 846 (1223)
+| .+|-+ ||..+|.|.+|+.++|.+||+ .|+.+ .
T Consensus 334 ---LD---------------------~ALlRpGRFd~~I~v~lPd~~~R~~IL~----------------~~l~~----~ 369 (638)
T CHL00176 334 ---LD---------------------AALLRPGRFDRQITVSLPDREGRLDILK----------------VHARN----K 369 (638)
T ss_pred ---hh---------------------hhhhccccCceEEEECCCCHHHHHHHHH----------------HHHhh----c
Confidence 11 13433 788999999999999999999 44432 1
Q ss_pred CCCCC-CccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHH
Q 000921 847 GLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1223)
Q Consensus 847 ~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~l 907 (1223)
.+..+ ++..++..+..|++++|+.+++.|.-.+..+ ++..|+.+++..+++.+
T Consensus 370 ~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~--------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 370 KLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR--------KKATITMKEIDTAIDRV 423 (638)
T ss_pred ccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHHH
Confidence 22223 7788899999999999999999886655522 23457888888887654
No 190
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.22 E-value=9.3e-06 Score=89.78 Aligned_cols=143 Identities=26% Similarity=0.395 Sum_probs=96.4
Q ss_pred HHHHHHHhhcccCCCCEEEEEcchhhhhcc------ChhHHHHHHHHhccCCC-----CEEEEEeccCCCcccccCCCCC
Q 000921 690 INELFEVALNESKSSPLIVFVKDIEKSLTG------NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGG 758 (1223)
Q Consensus 690 i~~L~eVl~s~s~~~plIlyi~Dvek~l~~------~~~~~~~~~~~l~~~~~-----~~~ii~s~~~~~~~~~~~~~~~ 758 (1223)
|.+||+-... ..|-|+||++.+-.-.. +-|....+-..|..|.| +|+-||++++++
T Consensus 199 Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~---------- 265 (368)
T COG1223 199 IHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPE---------- 265 (368)
T ss_pred HHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChh----------
Confidence 3445554433 66667777766653220 12333444455666655 899999998522
Q ss_pred ceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhh
Q 000921 759 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIIS 838 (1223)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih 838 (1223)
+|| .++-.|||..||..||+++.|+.|+.. .
T Consensus 266 ------------~LD---------------------~aiRsRFEeEIEF~LP~~eEr~~ile~----------------y 296 (368)
T COG1223 266 ------------LLD---------------------PAIRSRFEEEIEFKLPNDEERLEILEY----------------Y 296 (368)
T ss_pred ------------hcC---------------------HHHHhhhhheeeeeCCChHHHHHHHHH----------------H
Confidence 122 379999999999999999999999871 1
Q ss_pred HHHHhhhCCCCCC-CccccccccccCChHHHH-HHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHH
Q 000921 839 IRSVLSRNGLDCV-DLESLCIKDQTLTTEGVE-KIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNI 906 (1223)
Q Consensus 839 ~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe-~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~ 906 (1223)
.. .-+|.-+ ++..++.+|+.+||-+|. ++++.|+..++. .++-.|..++++.++..
T Consensus 297 ~k----~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~--------ed~e~v~~edie~al~k 354 (368)
T COG1223 297 AK----KFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA--------EDREKVEREDIEKALKK 354 (368)
T ss_pred HH----hCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH--------hchhhhhHHHHHHHHHh
Confidence 11 1144444 688899999999999986 588999888873 33445677888777654
No 191
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=6.8e-06 Score=97.66 Aligned_cols=153 Identities=20% Similarity=0.353 Sum_probs=111.7
Q ss_pred CCcchhhHHH------HHHHHHHhhcccCCCCEEEEEcchhhhhcc--C-hhHH---HHHHHHhccCCC-----CEEEEE
Q 000921 680 SLGDEVDKLA------INELFEVALNESKSSPLIVFVKDIEKSLTG--N-NDAY---GALKSKLENLPS-----NVVVIG 742 (1223)
Q Consensus 680 ~~~~~~~k~~------i~~L~eVl~s~s~~~plIlyi~Dvek~l~~--~-~~~~---~~~~~~l~~~~~-----~~~ii~ 742 (1223)
+|.+|||-+. +-.||..... +.|-|+||++++- +++ + .+.+ ..|-.+|-.+.| +|||||
T Consensus 369 sGSEFdEm~VGvGArRVRdLF~aAk~---~APcIIFIDEiDa-vG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvig 444 (752)
T KOG0734|consen 369 SGSEFDEMFVGVGARRVRDLFAAAKA---RAPCIIFIDEIDA-VGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIG 444 (752)
T ss_pred cccchhhhhhcccHHHHHHHHHHHHh---cCCeEEEEechhh-hcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEe
Confidence 3445666554 8889988877 8999999999998 552 2 2221 223333434444 999999
Q ss_pred eccCCCcccccCCCCCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHh--hCCCeEEEcCCchhhHHHHHH
Q 000921 743 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWK 820 (1223)
Q Consensus 743 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~--rfe~~VeI~lPdeegrl~iwk 820 (1223)
+.++ ||++| ++|.+ ||..||.+.+||-.||.+|++
T Consensus 445 ATNf------------------------------pe~LD-------------~AL~RPGRFD~~v~Vp~PDv~GR~eIL~ 481 (752)
T KOG0734|consen 445 ATNF------------------------------PEALD-------------KALTRPGRFDRHVTVPLPDVRGRTEILK 481 (752)
T ss_pred ccCC------------------------------hhhhh-------------HHhcCCCccceeEecCCCCcccHHHHHH
Confidence 9994 33333 34554 899999999999999999999
Q ss_pred HHHHHHHHHhhccchhhhHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchh
Q 000921 821 QQLERDVETLKGQSNIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTES 899 (1223)
Q Consensus 821 ~ql~~d~~~l~~~~n~ih~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~es 899 (1223)
-|+.++. ++.+ |+.-||.-|..|+|++++.||+.|.-++-+ ++...|++..
T Consensus 482 ----------------~yl~ki~----~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~--------dga~~VtM~~ 533 (752)
T KOG0734|consen 482 ----------------LYLSKIP----LDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV--------DGAEMVTMKH 533 (752)
T ss_pred ----------------HHHhcCC----cccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh--------cCcccccHHH
Confidence 6665443 3434 888899999999999999999999888875 3456678888
Q ss_pred HHHHHHHH
Q 000921 900 IMYGLNIL 907 (1223)
Q Consensus 900 l~~~l~~l 907 (1223)
++.+-+.+
T Consensus 534 LE~akDrI 541 (752)
T KOG0734|consen 534 LEFAKDRI 541 (752)
T ss_pred Hhhhhhhe
Confidence 87766553
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.14 E-value=1e-05 Score=77.40 Aligned_cols=36 Identities=50% Similarity=0.766 Sum_probs=31.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---eeEeecccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 1020 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~p---fI~Vs~seL 1020 (1223)
..++|+||||||||++++++|..+... ++.+++...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 579999999999999999999999775 777777654
No 193
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.13 E-value=5.9e-05 Score=92.19 Aligned_cols=181 Identities=17% Similarity=0.227 Sum_probs=103.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccc-c--
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-T-- 1021 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL-~-- 1021 (1223)
..+.+||.-..+-.++++.++..-+ . + ..+.+-+||+||||||||++++.||+++|+.+.+...+.. .
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~------~--~-~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMF------S--G-SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHh------c--c-CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 3567788877777777777765311 1 1 2234567899999999999999999999998886532211 0
Q ss_pred ------------------ch---hhhc-ccc-c-------CC---------------CChhHHHHHHHHHHHHHhccCCC
Q 000921 1022 ------------------SK---VDSM-LGR-R-------EN---------------PGEHEAMRKMKNEFMVNWDGLRT 1056 (1223)
Q Consensus 1022 ------------------sk---IDsI-~g~-R-------~s---------------~~e~e~~~rIl~~LL~~LDgl~~ 1056 (1223)
+. +..+ +.. + +. .-.+....++...|...+..
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~--- 162 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRS--- 162 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHc---
Confidence 00 1111 000 0 00 00011112222222222222
Q ss_pred CCCc-cEEEEee-c------CCC--------CCCCHHHHc-ccCceeeecCCCHHHHHHHHHHHHhhc--------ccCC
Q 000921 1057 KDKE-RVLVLAA-T------NRP--------FDLDEAVVR-RLPRRLMVNLPDAPNREKIIRVILAKE--------ELAS 1111 (1223)
Q Consensus 1057 k~~~-rVLVIAT-T------Nrp--------~~LD~ALlR-RFd~~I~VplPd~eeR~~ILr~~L~k~--------~l~~ 1111 (1223)
... ++++|.| | |.. ..+++.++. .--.+|.|.+-...--.+.|+.++..+ ....
T Consensus 163 -~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~ 241 (519)
T PF03215_consen 163 -SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPD 241 (519)
T ss_pred -CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCC
Confidence 223 6777777 1 111 146677776 223678888877777777777776654 1111
Q ss_pred ccc-HHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 000921 1112 DVD-LEGIANMADGYSGSDLKNLCVTAAHCPI 1142 (1223)
Q Consensus 1112 dvD-L~~LA~~TeGySGaDL~~L~~~Aa~~ai 1142 (1223)
... ++.|+..+. +||+.++....+.+.
T Consensus 242 ~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 242 KQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred hHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 122 677777665 599999887777766
No 194
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.12 E-value=3.1e-05 Score=89.54 Aligned_cols=180 Identities=20% Similarity=0.192 Sum_probs=103.5
Q ss_pred cccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch-
Q 000921 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 1023 (1223)
Q Consensus 948 fdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk- 1023 (1223)
++++.|-....+.+.+.+... .. ....|||+|++||||+++|++|.... +.||+.|+|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-------a~-----~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-------AP-----LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-------hC-----CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 457788887777777766541 11 12569999999999999999998776 479999999987533
Q ss_pred hhh-ccccc-----------------CCCC-----h-hHHHHHHHHHHHHHhccCC--C-----CCCccEEEEeecCCC-
Q 000921 1024 VDS-MLGRR-----------------ENPG-----E-HEAMRKMKNEFMVNWDGLR--T-----KDKERVLVLAATNRP- 1071 (1223)
Q Consensus 1024 IDs-I~g~R-----------------~s~~-----e-~e~~~rIl~~LL~~LDgl~--~-----k~~~rVLVIATTNrp- 1071 (1223)
++. +++.. ..++ + ......+...|+..++.-. . .....+.||+||+..
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l 152 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADL 152 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhH
Confidence 232 22211 0011 1 1111233344555554311 1 011247788888763
Q ss_pred ------CCCCHHHHcccCceeeecCCCHHHH----HHHHHHHHhhcc----cC--Cccc---HHHHHHHccCCcHHHHHH
Q 000921 1072 ------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAKEE----LA--SDVD---LEGIANMADGYSGSDLKN 1132 (1223)
Q Consensus 1072 ------~~LD~ALlRRFd~~I~VplPd~eeR----~~ILr~~L~k~~----l~--~dvD---L~~LA~~TeGySGaDL~~ 1132 (1223)
..+.+.|..||. .+.|.+|...+| ..+++.++.... .. ..++ +..|....---+-++|++
T Consensus 153 ~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~ 231 (326)
T PRK11608 153 PAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKN 231 (326)
T ss_pred HHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHH
Confidence 345577777883 244445555444 455666654421 11 1233 344444443446688888
Q ss_pred HHHHHHHH
Q 000921 1133 LCVTAAHC 1140 (1223)
Q Consensus 1133 L~~~Aa~~ 1140 (1223)
+++.|+..
T Consensus 232 vl~~a~~~ 239 (326)
T PRK11608 232 VVERSVYR 239 (326)
T ss_pred HHHHHHHh
Confidence 88887654
No 195
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.12 E-value=2.2e-05 Score=96.31 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=108.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccccc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~ 1021 (1223)
..++++|+|.....+.+.+.+.... .....|||+|++|||||++|++|.... +.||+.|+|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 4578899999988888887775411 123569999999999999999999885 5799999998875
Q ss_pred ch-hhh-ccccc-----------------CCCC------hhHHHHHHHHHHHHHhccCC--CCC-----CccEEEEeecC
Q 000921 1022 SK-VDS-MLGRR-----------------ENPG------EHEAMRKMKNEFMVNWDGLR--TKD-----KERVLVLAATN 1069 (1223)
Q Consensus 1022 sk-IDs-I~g~R-----------------~s~~------e~e~~~rIl~~LL~~LDgl~--~k~-----~~rVLVIATTN 1069 (1223)
.. ++. ++|.. ..++ -+.....+...|+..++.-. ..+ .-.+-||+||+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 44 332 22211 0001 11111233344555554311 000 12477888887
Q ss_pred CC-------CCCCHHHHcccC-ceeeecCCC--HHHHHHHHHHHHhhcc----cCCccc---HHHHHHHccCCcHHHHHH
Q 000921 1070 RP-------FDLDEAVVRRLP-RRLMVNLPD--APNREKIIRVILAKEE----LASDVD---LEGIANMADGYSGSDLKN 1132 (1223)
Q Consensus 1070 rp-------~~LD~ALlRRFd-~~I~VplPd--~eeR~~ILr~~L~k~~----l~~dvD---L~~LA~~TeGySGaDL~~ 1132 (1223)
.. ..+.+.|..|+. ..|.+|+.. .++...|++.++.+.. ....++ +..|....-.-+-++|++
T Consensus 340 ~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~ 419 (534)
T TIGR01817 340 RDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELEN 419 (534)
T ss_pred CCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHH
Confidence 53 234445555663 244454433 2344566777765532 111233 445555543446788999
Q ss_pred HHHHHHHHH
Q 000921 1133 LCVTAAHCP 1141 (1223)
Q Consensus 1133 L~~~Aa~~a 1141 (1223)
+++.|+..+
T Consensus 420 v~~~a~~~~ 428 (534)
T TIGR01817 420 CLERTATLS 428 (534)
T ss_pred HHHHHHHhC
Confidence 988887543
No 196
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.6e-05 Score=90.19 Aligned_cols=70 Identities=29% Similarity=0.367 Sum_probs=48.9
Q ss_pred ccCcHHHHHHHHHHHHccccChHhhhc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccc
Q 000921 951 IGALENVKDTLKELVMLPLQRPELFCK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 951 IgGle~vk~~L~e~V~lpL~~pelf~k---~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~s 1022 (1223)
++|.+..|+.|.-.|.. .|.++... ..+.-...+|||.||.|||||+||+.+|+-+++||-.-++..|..
T Consensus 63 VIGQe~AKKvLsVAVYN--HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTE 135 (408)
T COG1219 63 VIGQEQAKKVLSVAVYN--HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTE 135 (408)
T ss_pred eecchhhhceeeeeehh--HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhh
Confidence 57778888777544432 22222211 111112257999999999999999999999999999988877654
No 197
>PRK04132 replication factor C small subunit; Provisional
Probab=98.07 E-value=2e-05 Score=100.52 Aligned_cols=165 Identities=18% Similarity=0.218 Sum_probs=112.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEc--CCCChHHHHHHHHHHHh-----CCceeEe
Q 000921 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINI 1015 (1223)
Q Consensus 943 e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~G--PPGTGKT~LAkAIA~el-----g~pfI~V 1015 (1223)
....-|++|.-.++.+... +.. .+..|.-.-+..| |++.|||++|++||+++ +.+|+.+
T Consensus 537 ~~~~~~~~~~~~~~~~~~~---~~~-----------~~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lEl 602 (846)
T PRK04132 537 QNELYWDEITEVEELKGDF---IIY-----------DLHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLEL 602 (846)
T ss_pred ccchhHHhhHhHHhccCce---EEE-----------EeccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEE
Confidence 3456677776655444332 111 1123333445667 89999999999999998 5689999
Q ss_pred ecccccch------hhhcccccCCC----------ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHH
Q 000921 1016 SMSSITSK------VDSMLGRRENP----------GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV 1079 (1223)
Q Consensus 1016 s~seL~sk------IDsI~g~R~s~----------~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALl 1079 (1223)
++++..+. +..+...+.-. ..+.......+.|+..|+..+ .++.+|++||.++.+.++++
T Consensus 603 NASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~----~~~~FILi~N~~~kIi~tIr 678 (846)
T PRK04132 603 NASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS----SNVRFILSCNYSSKIIEPIQ 678 (846)
T ss_pred eCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHHhhCCC----CCeEEEEEeCChhhCchHHh
Confidence 99984321 33322111100 011122245567777777643 56788999999999999999
Q ss_pred cccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccCCc
Q 000921 1080 RRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1126 (1223)
Q Consensus 1080 RRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeGyS 1126 (1223)
+|+ ..+.|+.|+.++-..+|+.++.++++. ++..+..|+..++|--
T Consensus 679 SRC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDl 725 (846)
T PRK04132 679 SRC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDM 725 (846)
T ss_pred hhc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCH
Confidence 998 789999999999999999888876654 4556888898888743
No 198
>PRK12377 putative replication protein; Provisional
Probab=98.07 E-value=1.7e-05 Score=88.50 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=53.5
Q ss_pred HHHhcCCCCCCCCCCCccccc----CcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000921 932 KKLLADVIPPSDIGVTFDDIG----ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1223)
Q Consensus 932 ~~ll~~vI~~~e~~vtfdDIg----Gle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~e 1007 (1223)
+.+....|++.....+|++.. |...++..++.++.. |.. ...+++|+||||||||+||.|||++
T Consensus 57 ~~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~ 124 (248)
T PRK12377 57 KILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNR 124 (248)
T ss_pred HHHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 333444566666677888774 333345555554433 221 1268999999999999999999999
Q ss_pred h---CCceeEeecccccc
Q 000921 1008 A---GANFINISMSSITS 1022 (1223)
Q Consensus 1008 l---g~pfI~Vs~seL~s 1022 (1223)
+ |..++.++..+++.
T Consensus 125 l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 125 LLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred HHHcCCCeEEEEHHHHHH
Confidence 8 67777777766554
No 199
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.07 E-value=1.8e-05 Score=86.41 Aligned_cols=154 Identities=22% Similarity=0.285 Sum_probs=89.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CC----ceeEeeccc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GA----NFINISMSS 1019 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el-g~----pfI~Vs~se 1019 (1223)
.+.+.||.|-++..+.|.-+... | ..| .++|.||||||||+-+.++|+++ |- -++++++++
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~-----------g-nmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE-----------G-NMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc-----------C-CCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 35678999999999999766532 3 223 79999999999999999999997 32 355677765
Q ss_pred ccc------hhhhcccccC------------------CCChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCC
Q 000921 1020 ITS------KVDSMLGRRE------------------NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1075 (1223)
Q Consensus 1020 L~s------kIDsI~g~R~------------------s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD 1075 (1223)
-.+ +|-.+..++- ..+.+.+++|.+. = .+ ...-+..++|..+.+-
T Consensus 89 eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtME-------i-yS---~ttRFalaCN~s~KIi 157 (333)
T KOG0991|consen 89 ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTME-------I-YS---NTTRFALACNQSEKII 157 (333)
T ss_pred ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHH-------H-Hc---ccchhhhhhcchhhhh
Confidence 322 1222221110 0122223333322 1 11 2234566788888888
Q ss_pred HHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHccC
Q 000921 1076 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1124 (1223)
Q Consensus 1076 ~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-~dvDL~~LA~~TeG 1124 (1223)
+.+.+|+ ..+.+...+..+...-|....+.+.+. .+.-++.+.-..+|
T Consensus 158 EPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 158 EPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred hhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 8888877 445555555555544444444444333 23335555554444
No 200
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.06 E-value=4.1e-05 Score=88.68 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=87.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch-hhh-ccccc-----------------CCCC------h
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-VDS-MLGRR-----------------ENPG------E 1036 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk-IDs-I~g~R-----------------~s~~------e 1036 (1223)
..|||+|++||||+++|++|.... +.||+.|+|..+... ++. ++|.. ..++ -
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei 102 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDEL 102 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCEEEeCCh
Confidence 569999999999999999998766 479999999876543 332 22211 0011 1
Q ss_pred hHHHHHHHHHHHHHhccCC-------CCCCccEEEEeecCCC-------CCCCHHHHcccCceeeecCCCHHHH----HH
Q 000921 1037 HEAMRKMKNEFMVNWDGLR-------TKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EK 1098 (1223)
Q Consensus 1037 ~e~~~rIl~~LL~~LDgl~-------~k~~~rVLVIATTNrp-------~~LD~ALlRRFd~~I~VplPd~eeR----~~ 1098 (1223)
+.....+...|+..|+.-. ......+-||+||+.. ..+.+.|..||. .+.|.+|...+| ..
T Consensus 103 ~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~ 181 (329)
T TIGR02974 103 ATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIML 181 (329)
T ss_pred HhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHH
Confidence 1111233444555553311 0012347888888753 234566777873 234445554444 45
Q ss_pred HHHHHHhhc----ccC--Cccc---HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 000921 1099 IIRVILAKE----ELA--SDVD---LEGIANMADGYSGSDLKNLCVTAAHCP 1141 (1223)
Q Consensus 1099 ILr~~L~k~----~l~--~dvD---L~~LA~~TeGySGaDL~~L~~~Aa~~a 1141 (1223)
+++.++.+. +.. ..++ +..|....-.-+-++|+++++.|+..+
T Consensus 182 L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 182 LAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 556655442 111 1233 344444443346678888888877643
No 201
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.04 E-value=3.9e-05 Score=96.81 Aligned_cols=183 Identities=17% Similarity=0.278 Sum_probs=106.7
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
.+|+++.|.....+.+.+.+.. +.. ....|||+|++|||||++|++|...+ +.||+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~-------~a~-----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEM-------VAQ-----SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHH-------HhC-----CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 4677899988888888777654 111 12579999999999999999999875 57999999987754
Q ss_pred h-hhh-cccccC-----------------CCC------hhHHHHHHHHHHHHHhccCC--C-----CCCccEEEEeecCC
Q 000921 1023 K-VDS-MLGRRE-----------------NPG------EHEAMRKMKNEFMVNWDGLR--T-----KDKERVLVLAATNR 1070 (1223)
Q Consensus 1023 k-IDs-I~g~R~-----------------s~~------e~e~~~rIl~~LL~~LDgl~--~-----k~~~rVLVIATTNr 1070 (1223)
. ++. +++... .++ -......+...|+..|+.-. . .....+-||+||+.
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 3 222 222110 000 01111223334455443311 0 01235778888876
Q ss_pred CC-------CCCHHHHcccCceeeecCCCHHHHHH----HHHHHHhhcc----cC----CcccHHHHHHHccCCcHHHHH
Q 000921 1071 PF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA----SDVDLEGIANMADGYSGSDLK 1131 (1223)
Q Consensus 1071 p~-------~LD~ALlRRFd~~I~VplPd~eeR~~----ILr~~L~k~~----l~----~dvDL~~LA~~TeGySGaDL~ 1131 (1223)
.- .+...+..|+ ..+.|.+|...+|.+ +++.++.+.. .. +...+..|....---+-++|+
T Consensus 521 ~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~ 599 (686)
T PRK15429 521 DLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELE 599 (686)
T ss_pred CHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHH
Confidence 42 1223344344 245667777766644 5566655431 11 122245555554445778999
Q ss_pred HHHHHHHHHH
Q 000921 1132 NLCVTAAHCP 1141 (1223)
Q Consensus 1132 ~L~~~Aa~~a 1141 (1223)
++++.|+..+
T Consensus 600 ~~i~~a~~~~ 609 (686)
T PRK15429 600 NVIERAVLLT 609 (686)
T ss_pred HHHHHHHHhC
Confidence 9998887643
No 202
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.03 E-value=3.4e-05 Score=91.52 Aligned_cols=144 Identities=17% Similarity=0.289 Sum_probs=102.3
Q ss_pred HHHHHHHhhcccCCCCEEEEEcchhhhhccC--------hhHHHHHHHHhccCC-----CCEEEEEeccCCCcccccCCC
Q 000921 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHP 756 (1223)
Q Consensus 690 i~~L~eVl~s~s~~~plIlyi~Dvek~l~~~--------~~~~~~~~~~l~~~~-----~~~~ii~s~~~~~~~~~~~~~ 756 (1223)
+..+|+.+.. ..|.||||+|++.++..+ .+....+-..|..+. .+++||++....+
T Consensus 227 lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d-------- 295 (398)
T PTZ00454 227 VRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD-------- 295 (398)
T ss_pred HHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch--------
Confidence 5566666654 789999999999865421 222233333343332 3788888877421
Q ss_pred CCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHh--hCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccc
Q 000921 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQS 834 (1223)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~--rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~ 834 (1223)
.++ .+|-+ ||...|+|.+|+.+.|..||+
T Consensus 296 ----------------------~LD-------------pAllR~GRfd~~I~~~~P~~~~R~~Il~-------------- 326 (398)
T PTZ00454 296 ----------------------TLD-------------PALLRPGRLDRKIEFPLPDRRQKRLIFQ-------------- 326 (398)
T ss_pred ----------------------hCC-------------HHHcCCCcccEEEEeCCcCHHHHHHHHH--------------
Confidence 121 13444 899999999999999999999
Q ss_pred hhhhHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHH
Q 000921 835 NIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1223)
Q Consensus 835 n~ih~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~l 907 (1223)
+++.+| .+..+ ++..++..+..|++++|+.|+..|...++.+ +..+|+.++|..++..+
T Consensus 327 --~~~~~~----~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~--------~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 327 --TITSKM----NLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK--------NRYVILPKDFEKGYKTV 386 (398)
T ss_pred --HHHhcC----CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc--------CCCccCHHHHHHHHHHH
Confidence 555432 34444 8889999999999999999999998887742 23468899999887765
No 203
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.01 E-value=0.00013 Score=89.00 Aligned_cols=47 Identities=36% Similarity=0.593 Sum_probs=36.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~e 1007 (1223)
...|+||.|...+++.+.-.+. ....+||.||||||||++|++++..
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~l 234 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGI 234 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcc
Confidence 3478999999888776654321 1257999999999999999999863
No 204
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.00023 Score=84.45 Aligned_cols=226 Identities=22% Similarity=0.234 Sum_probs=137.2
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceeEeecccccch-
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK- 1023 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el-----g~pfI~Vs~seL~sk- 1023 (1223)
.+.|-+.-++.+++++..++. ...+.++.+.|-||||||.+..-+-..+ +...+.++|.+|...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 567888889999998877542 1234789999999999999988776554 234578888765443
Q ss_pred ------hhhcccccCCCChhHH-HHH----------HHHHHHHHhccCCCC--------------CCccEEEEeecCCCC
Q 000921 1024 ------VDSMLGRRENPGEHEA-MRK----------MKNEFMVNWDGLRTK--------------DKERVLVLAATNRPF 1072 (1223)
Q Consensus 1024 ------IDsI~g~R~s~~e~e~-~~r----------Il~~LL~~LDgl~~k--------------~~~rVLVIATTNrp~ 1072 (1223)
.+.++..-...+.... ... ++--.+++||.+... .+.++++|+.+|..+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 2333211111111100 011 111124455544322 357899999999998
Q ss_pred CCCHHHHc------ccCceeeecCCCHHHHHHHHHHHHhhcccCCc--ccHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 000921 1073 DLDEAVVR------RLPRRLMVNLPDAPNREKIIRVILAKEELASD--VDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1144 (1223)
Q Consensus 1073 ~LD~ALlR------RFd~~I~VplPd~eeR~~ILr~~L~k~~l~~d--vDL~~LA~~TeGySGaDL~~L~~~Aa~~aire 1144 (1223)
.-|..|.| .-+..+.|++.+.++..+||+.-+........ ..++..|+...|.|| ||+.++.- +|+
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv-----~R~ 374 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDV-----CRR 374 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHH-----HHH
Confidence 88877666 23678999999999999999999887654433 347888999988887 66654321 222
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccccc
Q 000921 1145 ILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1193 (1223)
Q Consensus 1145 ilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~s~ 1193 (1223)
.++..+.+..... ..+.+.-.......+|.++++..++..+--+-+.
T Consensus 375 aiEI~E~e~r~~~--~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~ 421 (529)
T KOG2227|consen 375 AIEIAEIEKRKIL--DDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSA 421 (529)
T ss_pred HHHHHHHHHhhcc--ccCCCCCCCcccccccchHHHHHHhhhhccChhh
Confidence 2222221111110 1111222222333678899999999887555443
No 205
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.99 E-value=6.8e-05 Score=78.38 Aligned_cols=120 Identities=21% Similarity=0.281 Sum_probs=75.8
Q ss_pred CcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 000921 953 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 1010 (1223)
Q Consensus 953 Gle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~---------------------- 1010 (1223)
|.+++.+.|...+.. .+.+..+|||||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 677888888887754 234578999999999999999999998721
Q ss_pred -ceeEeecccc--cchhhhc-------ccccCCC--------ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCC
Q 000921 1011 -NFINISMSSI--TSKVDSM-------LGRRENP--------GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1072 (1223)
Q Consensus 1011 -pfI~Vs~seL--~skIDsI-------~g~R~s~--------~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~ 1072 (1223)
.|+.+....- .-++|.+ .-..... ..+.......|.||..|+.-+ .++++|.+|+.++
T Consensus 68 ~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp----~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 68 PDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP----ENTYFILITNNPS 143 (162)
T ss_dssp TTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT----TTEEEEEEES-GG
T ss_pred cceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC----CCEEEEEEECChH
Confidence 2444444432 1112222 1110000 112233467788999998843 6789999999999
Q ss_pred CCCHHHHcccCceeeecC
Q 000921 1073 DLDEAVVRRLPRRLMVNL 1090 (1223)
Q Consensus 1073 ~LD~ALlRRFd~~I~Vpl 1090 (1223)
.|-+.+++|+ ..+.|+.
T Consensus 144 ~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 144 KILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp GS-HHHHTTS-EEEEE--
T ss_pred HChHHHHhhc-eEEecCC
Confidence 9999999998 5666654
No 206
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.98 E-value=0.00011 Score=82.37 Aligned_cols=65 Identities=35% Similarity=0.493 Sum_probs=47.5
Q ss_pred ccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CceeEeecccccc
Q 000921 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITS 1022 (1223)
Q Consensus 949 dDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg--~pfI~Vs~seL~s 1022 (1223)
..++|.++..+..--++++ ++. ++ -..+++||.||||||||.||-+|++++| .||.-+.++++++
T Consensus 38 ~g~vGQ~~AReAagiivdl-ik~----Kk----maGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIVDL-IKS----KK----MAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYS 104 (456)
T ss_pred cccccchhhhhhhhHHHHH-HHh----hh----ccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhh
Confidence 3577888777765544443 111 11 1248999999999999999999999995 7898888877554
No 207
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.97 E-value=7.2e-05 Score=93.63 Aligned_cols=182 Identities=18% Similarity=0.234 Sum_probs=104.0
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
.+|++|.|.....+.+.+.+... .+ ....|||+|++||||+++|++|...+ +.||+.|+|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~-------a~-----~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA-------AK-----SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH-------hC-----cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 46888888887777776666441 11 12459999999999999999999876 47999999988754
Q ss_pred h-hh-hccccc--------------CCCC-----h-hHHHHHHHHHHHHHhccCC--CCC-----CccEEEEeecCCCC-
Q 000921 1023 K-VD-SMLGRR--------------ENPG-----E-HEAMRKMKNEFMVNWDGLR--TKD-----KERVLVLAATNRPF- 1072 (1223)
Q Consensus 1023 k-ID-sI~g~R--------------~s~~-----e-~e~~~rIl~~LL~~LDgl~--~k~-----~~rVLVIATTNrp~- 1072 (1223)
. ++ .+++.. ..++ + ......+...|+..++.-. ..+ .-.+-||+||+..-
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~ 469 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLA 469 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHH
Confidence 3 22 233311 0111 1 1111223334444443211 101 11477889888642
Q ss_pred ------CCCHHHHcccCceeeecCCCHHHHH----HHHHHHHhhcc----cCCccc---HHHHHHHccCCcHHHHHHHHH
Q 000921 1073 ------DLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEE----LASDVD---LEGIANMADGYSGSDLKNLCV 1135 (1223)
Q Consensus 1073 ------~LD~ALlRRFd~~I~VplPd~eeR~----~ILr~~L~k~~----l~~dvD---L~~LA~~TeGySGaDL~~L~~ 1135 (1223)
.+.+.+.-|+ ..+.+.+|...+|. .+++.++.+.. ....+. +..|....-.-+-++|+++++
T Consensus 470 ~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~ 548 (638)
T PRK11388 470 MLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIE 548 (638)
T ss_pred HHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHH
Confidence 2233333344 24566677666663 45555554431 111233 444444443446688888888
Q ss_pred HHHHH
Q 000921 1136 TAAHC 1140 (1223)
Q Consensus 1136 ~Aa~~ 1140 (1223)
.|+..
T Consensus 549 ~~~~~ 553 (638)
T PRK11388 549 NLALS 553 (638)
T ss_pred HHHHh
Confidence 87654
No 208
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=97.96 E-value=1.3e-05 Score=67.27 Aligned_cols=50 Identities=32% Similarity=0.447 Sum_probs=43.2
Q ss_pred eEEccCC-ccceeecCCCCCccceEEEEeecCCcceEEEEEec-CCceEEEcCeec
Q 000921 154 FTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVH 207 (1223)
Q Consensus 154 ~tvG~~~-~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~LE~~~-~~G~v~vNg~~~ 207 (1223)
++|||.. .||+.++++.+|..||+|..... + ..+|++.+ .+|+ +|||+.+
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~-~--~~~i~d~~s~~gt-~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGG-G--RFYLIDLGSTNGT-FVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCC-C--eEEEEECCCCCCe-eECCEEC
Confidence 5899999 99999999999999999987533 3 47899999 7788 7999875
No 209
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.96 E-value=1.5e-05 Score=99.64 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=71.5
Q ss_pred CCCceee---ecceeEEccCCccce-----eecCCCCCccceEEEEeecCCcceEEEEEecC-CceEEEcCee-----cC
Q 000921 143 QNSHLSM---TGAVFTVGHNRQCDL-----YLKDPSISKNLCRLRRIENGGPSGALLEITGG-KGEVEVNGNV-----HP 208 (1223)
Q Consensus 143 ~~p~~~i---~~~~~tvG~~~~cd~-----~l~d~~~s~~~C~l~~~~~~g~~~a~LE~~~~-~G~v~vNg~~-----~~ 208 (1223)
+...++| -+--|.|||..+||+ .++|+.+|..|.+|... ++. .||||.+| ||| +|||+. +.
T Consensus 545 ~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~--~~~--~~~~Dl~S~nGT-~v~~~~~~r~~~~ 619 (668)
T PLN02927 545 VSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYK--DGA--FFLMDLRSEHGT-YVTDNEGRRYRAT 619 (668)
T ss_pred ccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEE--CCE--EEEEECCCCCcc-EEeCCCCceEecC
Confidence 3456888 567899999999997 99999999999999976 333 89999887 899 699888 45
Q ss_pred CCceEEeeCCCEEEEccCCCeeE
Q 000921 209 KDSQVVLRGGDELVFSPSGKHSY 231 (1223)
Q Consensus 209 k~~~~~L~~GDEv~f~~~~~~ay 231 (1223)
-|..+.|++||+|.|+..++.+|
T Consensus 620 p~~~~~l~~~d~I~~g~~~~~~f 642 (668)
T PLN02927 620 PNFPARFRSSDIIEFGSDKKAAF 642 (668)
T ss_pred CCCceEeCCCCEEEeCCCcceeE
Confidence 67799999999999999877555
No 210
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=0.00011 Score=84.87 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------------ce
Q 000921 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------NF 1012 (1223)
Q Consensus 954 le~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~---------------------pf 1012 (1223)
+..+.+.|...+.. .+-+.++||+||+|+||+++|.++|..+-+ .|
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 45666677665543 234578999999999999999999987732 13
Q ss_pred eEe--eccc------ccchhhhcc------cccC--CC------ChhHHH-HHHHHHHHHHhccCCCCCCccEEEEeecC
Q 000921 1013 INI--SMSS------ITSKVDSML------GRRE--NP------GEHEAM-RKMKNEFMVNWDGLRTKDKERVLVLAATN 1069 (1223)
Q Consensus 1013 I~V--s~se------L~skIDsI~------g~R~--s~------~e~e~~-~rIl~~LL~~LDgl~~k~~~rVLVIATTN 1069 (1223)
+.+ .+.. ..-.||.|- .... +. .+.+.+ ....|.||..|+.-+ .++++|.+|+
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp----~~~~fiL~~~ 151 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS----PGRYLWLISA 151 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC----CCCeEEEEEC
Confidence 333 1111 000133321 0110 00 112222 356788898888743 4577888889
Q ss_pred CCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHH
Q 000921 1070 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDL 1130 (1223)
Q Consensus 1070 rp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL 1130 (1223)
.++.|-+.+++|+ ..+.|+.|+.++-...|... +. ...+...++.++.|--+.-+
T Consensus 152 ~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 152 QPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGLAA 206 (319)
T ss_pred ChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHHHH
Confidence 9999999999999 77899999988776666532 22 22234567777777655443
No 211
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.94 E-value=0.00015 Score=82.65 Aligned_cols=158 Identities=16% Similarity=0.225 Sum_probs=91.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCceeEeecccccch-------hhhcccccCCCC-------------
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITSK-------VDSMLGRRENPG------------- 1035 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---------g~pfI~Vs~seL~sk-------IDsI~g~R~s~~------------- 1035 (1223)
.++||+|++|.|||++++..+... .+|++.|.++.--+. ++.+........
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999765 257777766542221 222211110000
Q ss_pred ------------hhHH---HHHHHHHHHHHhccCCCCCCccEEEEeecC--CCCCCCHHHHcccCceeeecCCCH-HHHH
Q 000921 1036 ------------EHEA---MRKMKNEFMVNWDGLRTKDKERVLVLAATN--RPFDLDEAVVRRLPRRLMVNLPDA-PNRE 1097 (1223)
Q Consensus 1036 ------------e~e~---~~rIl~~LL~~LDgl~~k~~~rVLVIATTN--rp~~LD~ALlRRFd~~I~VplPd~-eeR~ 1097 (1223)
-|.. ..+-..++|+.++.+...-.=.++.+||-. +.-.-|+-+.+|| ..+.+|.-.. ++..
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF-~~~~Lp~W~~d~ef~ 220 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRF-EPFELPRWELDEEFR 220 (302)
T ss_pred HHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhcc-CCccCCCCCCCcHHH
Confidence 0000 001122345555555433233455555543 2333567888899 4566665433 4456
Q ss_pred HHHHHHHhhcccC--Cccc----HHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 000921 1098 KIIRVILAKEELA--SDVD----LEGIANMADGYSGSDLKNLCVTAAHCPIRE 1144 (1223)
Q Consensus 1098 ~ILr~~L~k~~l~--~dvD----L~~LA~~TeGySGaDL~~L~~~Aa~~aire 1144 (1223)
.++..+-...++. ..+. ...|-.+|+|.+| +|..|+..|+..|++.
T Consensus 221 ~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 221 RLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc
Confidence 6776666554443 2222 3566678889776 7899999999999874
No 212
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=9.8e-05 Score=92.04 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=48.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
..++++|.|.++.++.++.++.... .+ ..+.+.++|+||||||||++++.+|.+++..++.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~--------~~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQV--------LE-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcc--------cc-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 4789999999999999988875411 11 2233569999999999999999999999877654
No 213
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.93 E-value=9.4e-05 Score=87.42 Aligned_cols=184 Identities=17% Similarity=0.204 Sum_probs=103.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCceeEeecccc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSI 1020 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el----g~pfI~Vs~seL 1020 (1223)
...+.+++|-....+.+++.+.. |... ...||++|++||||+++|++|.... +.|||.++|..+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~ap~-----~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------YAPS-----GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------hCCC-----CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 34577888888888887777654 2222 2579999999999999999998543 679999999887
Q ss_pred cch-hhh-c--------ccccCC---------CC------hhHHHHHHHHHHHHHhcc-----CCC--CCCccEEEEeec
Q 000921 1021 TSK-VDS-M--------LGRREN---------PG------EHEAMRKMKNEFMVNWDG-----LRT--KDKERVLVLAAT 1068 (1223)
Q Consensus 1021 ~sk-IDs-I--------~g~R~s---------~~------e~e~~~rIl~~LL~~LDg-----l~~--k~~~rVLVIATT 1068 (1223)
... .+. | .|...+ +| -++.--.....|+..||. +.. .....|.+|+||
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT 221 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICAT 221 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeecc
Confidence 665 111 2 221111 00 011111233345555554 111 123458888888
Q ss_pred CC--CCCCCH--HHHc-ccCceeeecCCC--HHHHHHHHHHHHhhc----ccCCcccH----HHHHH-HccCCcHHHHHH
Q 000921 1069 NR--PFDLDE--AVVR-RLPRRLMVNLPD--APNREKIIRVILAKE----ELASDVDL----EGIAN-MADGYSGSDLKN 1132 (1223)
Q Consensus 1069 Nr--p~~LD~--ALlR-RFd~~I~VplPd--~eeR~~ILr~~L~k~----~l~~dvDL----~~LA~-~TeGySGaDL~~ 1132 (1223)
+. ...+-. .+.+ |+...|.+|... ..++..+++.++..+ +.....+. ..|-. ...| +-++|++
T Consensus 222 ~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pG-NirELkN 300 (403)
T COG1221 222 TEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPG-NIRELKN 300 (403)
T ss_pred ccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCC-cHHHHHH
Confidence 63 122222 3333 666666665442 344555666666543 22222222 22221 2233 5578999
Q ss_pred HHHHHHHHH
Q 000921 1133 LCVTAAHCP 1141 (1223)
Q Consensus 1133 L~~~Aa~~a 1141 (1223)
+++.++..+
T Consensus 301 ~Ve~~~~~~ 309 (403)
T COG1221 301 LVERAVAQA 309 (403)
T ss_pred HHHHHHHHh
Confidence 998888765
No 214
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.93 E-value=8.4e-05 Score=91.23 Aligned_cols=66 Identities=20% Similarity=0.452 Sum_probs=53.0
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCceeE
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 1014 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~e-----------lg~pfI~ 1014 (1223)
-+|++|.|.....+.+++.+.. +.. ....|||+|++||||+++|++|-.. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~A~-----s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------YAR-----SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------HhC-----CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 3588899999888888887754 221 2257999999999999999999887 4679999
Q ss_pred eecccccch
Q 000921 1015 ISMSSITSK 1023 (1223)
Q Consensus 1015 Vs~seL~sk 1023 (1223)
|+|..+.+.
T Consensus 284 inCaal~e~ 292 (538)
T PRK15424 284 VNCGAIAES 292 (538)
T ss_pred eecccCChh
Confidence 999987544
No 215
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=9.7e-06 Score=96.29 Aligned_cols=48 Identities=40% Similarity=0.614 Sum_probs=39.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
..+|.||.|++..|+.+..... +| .++||+|||||||||||+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------Gg-----HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------GG-----HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------cC-----CcEEEecCCCCchHHhhhhhcccC
Confidence 3589999999999999976542 33 689999999999999999987544
No 216
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00023 Score=82.46 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=95.4
Q ss_pred cHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 000921 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 1011 (1223)
Q Consensus 954 le~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p---------------------- 1011 (1223)
+....+.|...+.. .+.+.++||+||+|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 7 LQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 45566666665543 2345799999999999999999999987331
Q ss_pred --eeEeeccc-ccchhhhcc------cccCC-C-------ChhH-HHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCC
Q 000921 1012 --FINISMSS-ITSKVDSML------GRREN-P-------GEHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1073 (1223)
Q Consensus 1012 --fI~Vs~se-L~skIDsI~------g~R~s-~-------~e~e-~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~ 1073 (1223)
|+.+.+.+ -.-+||.+- ..+.. + .+.+ ......|.||..|+.-+ ..+++|.+|+.++.
T Consensus 74 PD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp----~~~~fiL~t~~~~~ 149 (325)
T PRK06871 74 PDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR----PNTYFLLQADLSAA 149 (325)
T ss_pred CCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC----CCeEEEEEECChHh
Confidence 23332210 000133331 00100 0 1122 22357788898888833 56788889999999
Q ss_pred CCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcH
Q 000921 1074 LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1127 (1223)
Q Consensus 1074 LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySG 1127 (1223)
|-+.+++|+ ..+.|+.|+.++-.+.|..... ........++..+.|--+
T Consensus 150 llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 150 LLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred CchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 999999999 7789999998887777765432 112234455666666443
No 217
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.89 E-value=0.00014 Score=88.88 Aligned_cols=183 Identities=15% Similarity=0.217 Sum_probs=107.3
Q ss_pred CcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch
Q 000921 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 1023 (1223)
Q Consensus 947 tfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk 1023 (1223)
.+.+|+|.....+.+.+.+.. +. .....|||+|++||||+++|++|.... +.||+.|+|..+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~-------~a-----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV-------VA-----ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 356788888888888777754 11 123579999999999999999999885 579999999887543
Q ss_pred -hhh-cccccC-----------------CCC------hhHHHHHHHHHHHHHhccCC-----C--CCCccEEEEeecCCC
Q 000921 1024 -VDS-MLGRRE-----------------NPG------EHEAMRKMKNEFMVNWDGLR-----T--KDKERVLVLAATNRP 1071 (1223)
Q Consensus 1024 -IDs-I~g~R~-----------------s~~------e~e~~~rIl~~LL~~LDgl~-----~--k~~~rVLVIATTNrp 1071 (1223)
+++ ++|... .++ -......+...|+..++.-. . ...-.+-||+|||+.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 332 333110 000 11111233344555443211 0 011257888888764
Q ss_pred C-------CCCHHHHcccCceeeecCCCHHHH----HHHHHHHHhhccc-----CCccc---HHHHHHHccCCcHHHHHH
Q 000921 1072 F-------DLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAKEEL-----ASDVD---LEGIANMADGYSGSDLKN 1132 (1223)
Q Consensus 1072 ~-------~LD~ALlRRFd~~I~VplPd~eeR----~~ILr~~L~k~~l-----~~dvD---L~~LA~~TeGySGaDL~~ 1132 (1223)
- .+.+.|..|+. .+.|.+|...+| ..+++.++.+... ...++ +..|....-.-+-.+|++
T Consensus 333 l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~ 411 (509)
T PRK05022 333 LREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEH 411 (509)
T ss_pred HHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHH
Confidence 2 24445555653 345556665555 3455555544311 12233 444544444457789999
Q ss_pred HHHHHHHHHH
Q 000921 1133 LCVTAAHCPI 1142 (1223)
Q Consensus 1133 L~~~Aa~~ai 1142 (1223)
+++.|+..+-
T Consensus 412 ~i~ra~~~~~ 421 (509)
T PRK05022 412 VISRAALLAR 421 (509)
T ss_pred HHHHHHHhcC
Confidence 9999887553
No 218
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00023 Score=82.88 Aligned_cols=137 Identities=13% Similarity=0.163 Sum_probs=88.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC------------------------ceeEeeccc--ccchhhhc---c---c
Q 000921 982 KPCKGILLFGPPGTGKTMLAKAVATEAGA------------------------NFINISMSS--ITSKVDSM---L---G 1029 (1223)
Q Consensus 982 ~PprGILL~GPPGTGKT~LAkAIA~elg~------------------------pfI~Vs~se--L~skIDsI---~---g 1029 (1223)
+.+.++||+||+|+||+++|.++|..+-+ .|+.+.+.. -.-+||.+ . .
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 34579999999999999999999998832 133333221 00113332 1 1
Q ss_pred ccCC-C-------ChhHHH-HHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHH
Q 000921 1030 RREN-P-------GEHEAM-RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 1100 (1223)
Q Consensus 1030 ~R~s-~-------~e~e~~-~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~IL 1100 (1223)
.+.. + ...+.+ ...-|.||..|+.- ..++++|.+|++++.|-+.+++|+. .+.|+.|+.++..+.|
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTIrSRCq-~~~~~~~~~~~~~~~L 176 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDAAANALLKTLEEP----PENTWFFLACREPARLLATLRSRCR-LHYLAPPPEQYALTWL 176 (334)
T ss_pred hccccCCceEEEEcchHhhCHHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHhccc-cccCCCCCHHHHHHHH
Confidence 1111 0 112333 35778899999883 3568889999999999999999995 6899999988777666
Q ss_pred HHHHhhcccCCcccHHHHHHHccCCcH
Q 000921 1101 RVILAKEELASDVDLEGIANMADGYSG 1127 (1223)
Q Consensus 1101 r~~L~k~~l~~dvDL~~LA~~TeGySG 1127 (1223)
.... +.. ..+...++..+.|--+
T Consensus 177 ~~~~---~~~-~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 177 SREV---TMS-QDALLAALRLSAGAPG 199 (334)
T ss_pred HHcc---CCC-HHHHHHHHHHcCCCHH
Confidence 5321 222 2234566777777444
No 219
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.88 E-value=2.5e-05 Score=90.46 Aligned_cols=38 Identities=32% Similarity=0.614 Sum_probs=33.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
.+++||||+|||||+||.|||+++ |..++.++..+++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~ 224 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE 224 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence 689999999999999999999997 77888888777654
No 220
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=4.2e-05 Score=89.04 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=48.3
Q ss_pred HHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHH
Q 000921 1042 KMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1103 (1223)
Q Consensus 1042 rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~ 1103 (1223)
..-|.||..|+.- ..++++|.+|++++.|.+.+++|+ ..|.|++|+.++..+.|...
T Consensus 147 ~AaNaLLKtLEEP----p~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 147 AAANALLKTLEEP----PPGTVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHHHHHHhcCC----CcCcEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 4558899998873 356899999999999999999999 78999999999888888653
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.84 E-value=8e-05 Score=83.07 Aligned_cols=79 Identities=25% Similarity=0.376 Sum_probs=52.3
Q ss_pred HHHhcCCCCCCCCCCCcccccCc----HHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000921 932 KKLLADVIPPSDIGVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1223)
Q Consensus 932 ~~ll~~vI~~~e~~vtfdDIgGl----e~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~e 1007 (1223)
+.+....|++.....+|+++.-. ..+...+.+++.. |.. ...+++|+|+||||||+||.+||.+
T Consensus 55 ~~~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~~-----~~~~~~l~G~~GtGKThLa~aia~~ 122 (244)
T PRK07952 55 RTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FDG-----NIASFIFSGKPGTGKNHLAAAICNE 122 (244)
T ss_pred HHHHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hcc-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 33344456665567788887532 2233444443322 211 1258999999999999999999999
Q ss_pred h---CCceeEeecccccc
Q 000921 1008 A---GANFINISMSSITS 1022 (1223)
Q Consensus 1008 l---g~pfI~Vs~seL~s 1022 (1223)
+ |..++.++..+++.
T Consensus 123 l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 123 LLLRGKSVLIITVADIMS 140 (244)
T ss_pred HHhcCCeEEEEEHHHHHH
Confidence 8 77888887777653
No 222
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.84 E-value=3.9e-05 Score=85.89 Aligned_cols=40 Identities=40% Similarity=0.683 Sum_probs=35.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 1023 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk 1023 (1223)
+.+++|+||||||||+||.|||+++ |..++.+..++++..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 4799999999999999999999998 788999988887755
No 223
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.81 E-value=0.00015 Score=88.95 Aligned_cols=66 Identities=24% Similarity=0.462 Sum_probs=53.2
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
-+|++|.|.....+.+.+.+.. +.. ....|||+|++||||+++|++|.... +.||+.|+|..+.+
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~A~-----~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------YAR-----SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------HhC-----CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 5688999999888888887754 221 22579999999999999999999775 57999999988754
Q ss_pred h
Q 000921 1023 K 1023 (1223)
Q Consensus 1023 k 1023 (1223)
.
T Consensus 277 ~ 277 (526)
T TIGR02329 277 S 277 (526)
T ss_pred h
Confidence 3
No 224
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.0004 Score=80.34 Aligned_cols=131 Identities=17% Similarity=0.157 Sum_probs=87.4
Q ss_pred cHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----------------------
Q 000921 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA----------------------- 1010 (1223)
Q Consensus 954 le~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~----------------------- 1010 (1223)
+..+.+.|...+.. .+.+.++||+||.|+||+.+|+++|+.+-+
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 45666777666543 234579999999999999999999998722
Q ss_pred ceeEeecccc--cchhhhcc------cccC--CC------ChhHHH-HHHHHHHHHHhccCCCCCCccEEEEeecCCCCC
Q 000921 1011 NFINISMSSI--TSKVDSML------GRRE--NP------GEHEAM-RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1073 (1223)
Q Consensus 1011 pfI~Vs~seL--~skIDsI~------g~R~--s~------~e~e~~-~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~ 1073 (1223)
.|+.+.+..- .-+||.+- .... +. ...+.+ ...-|.||..|+.-+ .++++|.+|+.++.
T Consensus 75 D~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp----~~t~fiL~t~~~~~ 150 (319)
T PRK06090 75 DLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA----PNCLFLLVTHNQKR 150 (319)
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC----CCeEEEEEECChhh
Confidence 2444433210 00133331 0000 00 112222 357788999888833 56888899999999
Q ss_pred CCHHHHcccCceeeecCCCHHHHHHHHHH
Q 000921 1074 LDEAVVRRLPRRLMVNLPDAPNREKIIRV 1102 (1223)
Q Consensus 1074 LD~ALlRRFd~~I~VplPd~eeR~~ILr~ 1102 (1223)
|-+.+++|+ ..+.|+.|+.++..+.|..
T Consensus 151 lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 151 LLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred ChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 999999999 6899999998887776653
No 225
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.81 E-value=0.00018 Score=88.25 Aligned_cols=183 Identities=22% Similarity=0.265 Sum_probs=103.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccccc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~ 1021 (1223)
..+|++|.|-....+.+.+.+.. +... ...|||+|++||||+++|++|.... +.||+.++|..+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~-------~A~~-----~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK-------LAML-----DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH-------HhCC-----CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 45788999988877777665543 1111 2459999999999999999987665 4799999998875
Q ss_pred ch-hhh-cccccC-----------------CCC------hhHHHHHHHHHHHHHhccC--CCCC-----CccEEEEeecC
Q 000921 1022 SK-VDS-MLGRRE-----------------NPG------EHEAMRKMKNEFMVNWDGL--RTKD-----KERVLVLAATN 1069 (1223)
Q Consensus 1022 sk-IDs-I~g~R~-----------------s~~------e~e~~~rIl~~LL~~LDgl--~~k~-----~~rVLVIATTN 1069 (1223)
+. ++. ++|... .++ -+.....+...|+..+..- ...+ .-.+-||+||+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~ 347 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 347 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecC
Confidence 43 332 232110 001 1111123333444444321 1111 12467888887
Q ss_pred CCC-------CCCHHHHcccCceeeecCCCHHHHH----HHHHHHHhhc----cc-CCcccHHHHHHHc---cCCcHHHH
Q 000921 1070 RPF-------DLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKE----EL-ASDVDLEGIANMA---DGYSGSDL 1130 (1223)
Q Consensus 1070 rp~-------~LD~ALlRRFd~~I~VplPd~eeR~----~ILr~~L~k~----~l-~~dvDL~~LA~~T---eGySGaDL 1130 (1223)
..- .+.+.+..|+. .+.+.+|...+|. .+++.++.+. +. ...+.-+.+..+. -.-+-++|
T Consensus 348 ~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL 426 (520)
T PRK10820 348 KNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQL 426 (520)
T ss_pred CCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHH
Confidence 542 24456666764 3666666665554 3444555432 21 1233433333332 23366888
Q ss_pred HHHHHHHHHH
Q 000921 1131 KNLCVTAAHC 1140 (1223)
Q Consensus 1131 ~~L~~~Aa~~ 1140 (1223)
++++..|+..
T Consensus 427 ~nvl~~a~~~ 436 (520)
T PRK10820 427 KNAIYRALTQ 436 (520)
T ss_pred HHHHHHHHHh
Confidence 8888877754
No 226
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.80 E-value=9.9e-05 Score=89.01 Aligned_cols=67 Identities=30% Similarity=0.419 Sum_probs=54.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccccc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~ 1021 (1223)
.-+|++|.|-......+.+.+.. + ......|||.|.+||||-++|++|-+.+ +.|||.|+|..+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-------~-----A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-------I-----AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-------h-----cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 46899999998888888776643 1 2234789999999999999999999887 6899999998765
Q ss_pred ch
Q 000921 1022 SK 1023 (1223)
Q Consensus 1022 sk 1023 (1223)
..
T Consensus 309 e~ 310 (560)
T COG3829 309 ET 310 (560)
T ss_pred HH
Confidence 43
No 227
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.78 E-value=6.5e-05 Score=73.20 Aligned_cols=112 Identities=19% Similarity=0.367 Sum_probs=60.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEeecccccchhhhcccccCCCC-hhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRRENPG-EHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~skIDsI~g~R~s~~-e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
|++.||||+|||++|+.||..+|++++.++. ++-. ..+.+...... ........+...+..+.. ......+||
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~ii 75 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD--LIRE-PGWIERDDDEREYIDADIDLLDDILEQLQN---KPDNDNWII 75 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH--HHCC-GTHCHGCTTCCHHHHHHHHHHHHHHHHHHE---TTT--EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc--eEEe-ccccccCcchhhHHHHHHHHHHHHHHhhhc---cCCCCeEEE
Confidence 7899999999999999999999988876554 3211 11111111101 111122223333333211 111233444
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhh
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1106 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k 1106 (1223)
-. .+....+. ....++..|++-.|....|.++++..+..
T Consensus 76 ~g-~~~~~~~~-~~~~~~~~i~l~~~~~~~~~~~~~R~~~~ 114 (121)
T PF13207_consen 76 DG-SYESEMEI-RLPEFDHVIYLDAPDEECRERRLKRRLRR 114 (121)
T ss_dssp EC-CSCHCCHS-CCHHGGCEEEEEEEEHHHHHHHHHHHHHH
T ss_pred eC-CCccchhh-hhhcCCEEEEEECCCHHHHHHHHHHHhHH
Confidence 33 22222211 22255688888888877888888887765
No 228
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.78 E-value=6.5e-05 Score=86.33 Aligned_cols=40 Identities=30% Similarity=0.518 Sum_probs=34.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 1023 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk 1023 (1223)
.+|++||||+|||||+||.|||+++ |.++..+..++++..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 4799999999999999999999998 788888877776543
No 229
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.77 E-value=2.4e-05 Score=83.13 Aligned_cols=40 Identities=45% Similarity=0.759 Sum_probs=32.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 1023 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk 1023 (1223)
..+++|+||||||||+||.|||+++ |.+++.++.++++..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 4799999999999999999999887 888888988887655
No 230
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.77 E-value=0.00035 Score=78.35 Aligned_cols=162 Identities=19% Similarity=0.266 Sum_probs=100.0
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
.+++.+.+.++....|+.+... + . .-++|+|||+|+||-+.+-++-+++ |++=.++..-++..
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~~-----------~-d--~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSST-----------G-D--FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhccc-----------C-C--CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 4566777888888888765431 1 1 1379999999999999999999998 33333333222221
Q ss_pred h------hhhccc------ccCCCChhHHHHHHHHHHHHHhccCCC---------------------------------C
Q 000921 1023 K------VDSMLG------RRENPGEHEAMRKMKNEFMVNWDGLRT---------------------------------K 1057 (1223)
Q Consensus 1023 k------IDsI~g------~R~s~~e~e~~~rIl~~LL~~LDgl~~---------------------------------k 1057 (1223)
. |-.+.. ...+.|.+ .+-++++++.++-...+ +
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~--DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNY--DRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK 153 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcc--cHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH
Confidence 1 000000 00000111 12233333333321110 0
Q ss_pred CCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCC-cccHHHHHHHccC
Q 000921 1058 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDLEGIANMADG 1124 (1223)
Q Consensus 1058 ~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~-dvDL~~LA~~TeG 1124 (1223)
-...+-+|..+|....+-+++++|+ ..|.+|.|+.++...++...+.++++.- ..-+..+|+.++|
T Consensus 154 Ys~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred HhcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcc
Confidence 1234667788888888999999988 7899999999999999999999987763 3335667777664
No 231
>PRK08181 transposase; Validated
Probab=97.75 E-value=0.00011 Score=83.11 Aligned_cols=38 Identities=34% Similarity=0.626 Sum_probs=32.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
.+++|+||||||||+||.+||.++ |..++.++..+++.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~ 147 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ 147 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH
Confidence 689999999999999999999765 77888888777655
No 232
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.74 E-value=0.00059 Score=84.19 Aligned_cols=214 Identities=17% Similarity=0.153 Sum_probs=125.2
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceeEeeccc
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSS 1019 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el----------g~pfI~Vs~se 1019 (1223)
.+.+-+.-..+|..++...+.- + + -...+.+.|-||||||.+++.+-.++ .+.|+.|++=.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-----~-~---~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~ 467 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-----Q-G---LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR 467 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-----C-C---CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee
Confidence 4566777888888877664422 0 1 12468899999999999999999866 47788888866
Q ss_pred ccch---------------------hhhcccccC---CC--------ChhHHHHHHHHHHHHHhccCCCCCCccEEEEee
Q 000921 1020 ITSK---------------------VDSMLGRRE---NP--------GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1067 (1223)
Q Consensus 1020 L~sk---------------------IDsI~g~R~---s~--------~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIAT 1067 (1223)
+.+. ++.+..... .. .+-+.+-.-.+..|-.+-..+...+.+++||+.
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~I 547 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAI 547 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEe
Confidence 5543 111100000 00 000000000011222222334446688999999
Q ss_pred cCCCCCCCHHHH----ccc-CceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHH--HHHHHHHHHHHH
Q 000921 1068 TNRPFDLDEAVV----RRL-PRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS--DLKNLCVTAAHC 1140 (1223)
Q Consensus 1068 TNrp~~LD~ALl----RRF-d~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGa--DL~~L~~~Aa~~ 1140 (1223)
.|..+....-|. +|. -.+|.|.+.+..|..+|+...|.....-..-.++-+|+.-...+|. .-..+|++|+..
T Consensus 548 aNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Ei 627 (767)
T KOG1514|consen 548 ANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEI 627 (767)
T ss_pred cccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 988665433333 243 2568899999999999999988765322233355555555445542 234567666655
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhcCccc
Q 000921 1141 PIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1191 (1223)
Q Consensus 1141 aireilek~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v~PS~ 1191 (1223)
|-.+.. .........|++-|+.+|+.++-.+.
T Consensus 628 a~~~~~-------------------~~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 628 AEERNV-------------------KGKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred hhhhcc-------------------cccccccceeehHHHHHHHHHHhhhh
Confidence 443311 01223345689999999999886554
No 233
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.74 E-value=0.00017 Score=86.12 Aligned_cols=182 Identities=20% Similarity=0.232 Sum_probs=107.7
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeec
Q 000921 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1223)
Q Consensus 941 ~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~ 1017 (1223)
.++....+.+|+|......++.+.|.. . ......|||.|..||||-.+|++|-..+ +-||+.++|
T Consensus 215 ~~~~~~~~~~iIG~S~am~~ll~~i~~-------V-----A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NC 282 (550)
T COG3604 215 LSEVVLEVGGIIGRSPAMRQLLKEIEV-------V-----AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNC 282 (550)
T ss_pred ccchhcccccceecCHHHHHHHHHHHH-------H-----hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeec
Confidence 344466778899998888888887765 1 1223689999999999999999999887 679999999
Q ss_pred ccccch----------------------------------hhhcccccCCCChhHHHHHHHHHHHH-HhccCCCCC--Cc
Q 000921 1018 SSITSK----------------------------------VDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTKD--KE 1060 (1223)
Q Consensus 1018 seL~sk----------------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~-~LDgl~~k~--~~ 1060 (1223)
+.+-.. +|.|.... -....+++..|.. +++.+.... .-
T Consensus 283 AAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP-----L~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 283 AALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP-----LALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred cccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCC-----HHHHHHHHHHHhhcceeecCCCceeEE
Confidence 876543 23332111 1111222222211 233332211 12
Q ss_pred cEEEEeecCCCCCCCHHHHc-ccCce-------eeecCCCHHHH----HHHHHHHHhhcc----c-CCccc---HHHHHH
Q 000921 1061 RVLVLAATNRPFDLDEAVVR-RLPRR-------LMVNLPDAPNR----EKIIRVILAKEE----L-ASDVD---LEGIAN 1120 (1223)
Q Consensus 1061 rVLVIATTNrp~~LD~ALlR-RFd~~-------I~VplPd~eeR----~~ILr~~L~k~~----l-~~dvD---L~~LA~ 1120 (1223)
.|-||||||+ +|..+++. +|... +.+.+|...+| .-+.++++.+.. . ...++ ++.|-+
T Consensus 358 DVRiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 358 DVRVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 3789999997 45566665 44322 23345666665 334445554432 2 11222 333333
Q ss_pred HccCCcHHHHHHHHHHHHHHH
Q 000921 1121 MADGYSGSDLKNLCVTAAHCP 1141 (1223)
Q Consensus 1121 ~TeGySGaDL~~L~~~Aa~~a 1141 (1223)
..--=+-++|++++++|+..|
T Consensus 436 y~wPGNVRELen~veRavlla 456 (550)
T COG3604 436 YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 332225589999999999866
No 234
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.73 E-value=0.00035 Score=87.33 Aligned_cols=50 Identities=30% Similarity=0.448 Sum_probs=42.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 1010 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~ 1010 (1223)
...|++|.|.+++++.|...+.. .+.+||+||||||||++|+++|..+..
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 46799999999999999876643 137999999999999999999998753
No 235
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.72 E-value=0.00015 Score=86.98 Aligned_cols=145 Identities=20% Similarity=0.281 Sum_probs=103.1
Q ss_pred HHHHHHHhhcccCCCCEEEEEcchhhhhcc--------ChhHHHHHHHHhccC-----CCCEEEEEeccCCCcccccCCC
Q 000921 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHP 756 (1223)
Q Consensus 690 i~~L~eVl~s~s~~~plIlyi~Dvek~l~~--------~~~~~~~~~~~l~~~-----~~~~~ii~s~~~~~~~~~~~~~ 756 (1223)
+..+|+.... ..|.||||.|++.++.. ..+....+-..|..+ .+++.||++.+..+.
T Consensus 265 vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~------- 334 (438)
T PTZ00361 265 VRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES------- 334 (438)
T ss_pred HHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH-------
Confidence 5666666654 78999999999997642 233333333444333 347888888763111
Q ss_pred CCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHh--hCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccc
Q 000921 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQS 834 (1223)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~--rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~ 834 (1223)
+ ..+|-+ ||..+|+|.+|+.+.|.+||.
T Consensus 335 -----------------------L-------------DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~-------------- 364 (438)
T PTZ00361 335 -----------------------L-------------DPALIRPGRIDRKIEFPNPDEKTKRRIFE-------------- 364 (438)
T ss_pred -----------------------h-------------hHHhccCCeeEEEEEeCCCCHHHHHHHHH--------------
Confidence 1 123433 788999999999999999999
Q ss_pred hhhhHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHHh
Q 000921 835 NIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 908 (1223)
Q Consensus 835 n~ih~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~lq 908 (1223)
+|+.+| .+..+ +++.++..+..+++++|..++..|.-.++.+ +...|+.+++..|+..+.
T Consensus 365 --~~~~k~----~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~--------~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 365 --IHTSKM----TLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRE--------RRMKVTQADFRKAKEKVL 425 (438)
T ss_pred --HHHhcC----CCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--------cCCccCHHHHHHHHHHHH
Confidence 666543 23334 8889999999999999999999988888742 245688999988887753
No 236
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=97.70 E-value=0.00015 Score=76.48 Aligned_cols=75 Identities=29% Similarity=0.436 Sum_probs=63.5
Q ss_pred eeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEec-CCceEEEcCeecCCCceEEeeCCCEEEEcc
Q 000921 147 LSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVFSP 225 (1223)
Q Consensus 147 ~~i~~~~~tvG~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~LE~~~-~~G~v~vNg~~~~k~~~~~L~~GDEv~f~~ 225 (1223)
..+....+|+||+..+|+.|+|+.+|..||.|+..+.. .+||+.+ +||| +|||.++.. .+.|+.||.|.|+.
T Consensus 84 ~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt-~vn~~~v~~--~~~l~~gd~i~i~~ 156 (191)
T COG1716 84 IVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGT-YVNGEKVRQ--RVLLQDGDVIRLGG 156 (191)
T ss_pred cccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcce-EECCeEccC--cEEcCCCCEEEECc
Confidence 33445689999999999999999999999999987544 6667766 5688 799999998 79999999999987
Q ss_pred CCC
Q 000921 226 SGK 228 (1223)
Q Consensus 226 ~~~ 228 (1223)
...
T Consensus 157 ~~~ 159 (191)
T COG1716 157 TLA 159 (191)
T ss_pred cce
Confidence 754
No 237
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.67 E-value=0.0001 Score=77.78 Aligned_cols=39 Identities=28% Similarity=0.595 Sum_probs=32.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 1023 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk 1023 (1223)
..|||+|++||||+++|++|-... +.||+.|+|+.+...
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~ 64 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEE 64 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcc
Confidence 579999999999999999999976 579999999987654
No 238
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.67 E-value=0.00033 Score=83.52 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=89.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch-hhh-ccccc-----------------CCCC------h
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-VDS-MLGRR-----------------ENPG------E 1036 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk-IDs-I~g~R-----------------~s~~------e 1036 (1223)
..++|+|++||||+++|+++.... +.||+.++|..+.+. ++. ++|.. ..++ -
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i 242 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEI 242 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEech
Confidence 569999999999999999998876 478999999887543 222 22210 0001 1
Q ss_pred hHHHHHHHHHHHHHhccCC--C-----CCCccEEEEeecCCC-------CCCCHHHHcccCceeeecCCCHHHHHH----
Q 000921 1037 HEAMRKMKNEFMVNWDGLR--T-----KDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK---- 1098 (1223)
Q Consensus 1037 ~e~~~rIl~~LL~~LDgl~--~-----k~~~rVLVIATTNrp-------~~LD~ALlRRFd~~I~VplPd~eeR~~---- 1098 (1223)
......+...|+..++.-. . .....+-||+||+.. ..+.+.|..|| ..+.+.+|...+|.+
T Consensus 243 ~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~ 321 (445)
T TIGR02915 243 GDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVL 321 (445)
T ss_pred hhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHH
Confidence 1111233344444443211 0 011257788888765 34555566666 345666676666654
Q ss_pred HHHHHHhhccc----C-Cccc---HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 000921 1099 IIRVILAKEEL----A-SDVD---LEGIANMADGYSGSDLKNLCVTAAHCP 1141 (1223)
Q Consensus 1099 ILr~~L~k~~l----~-~dvD---L~~LA~~TeGySGaDL~~L~~~Aa~~a 1141 (1223)
+++.++.+... . ..++ +..|....-.-+-++|+++++.|+..+
T Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 322 LANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 55555544311 1 1233 445555544456788999988887543
No 239
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.67 E-value=0.00055 Score=80.77 Aligned_cols=147 Identities=24% Similarity=0.338 Sum_probs=91.0
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcee-----
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI----- 1013 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el-------g~pfI----- 1013 (1223)
..|.-+.|.+..+..|--... .....|+|+-|+.|||||+++||||.-+ |++|-
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 446677899988887743211 1223689999999999999999999877 33221
Q ss_pred ----------------------------Eeec---cc-ccchhhhc--c--cc---------cCCCC------hhHHHHH
Q 000921 1014 ----------------------------NISM---SS-ITSKVDSM--L--GR---------RENPG------EHEAMRK 1042 (1223)
Q Consensus 1014 ----------------------------~Vs~---se-L~skIDsI--~--g~---------R~s~~------e~e~~~r 1042 (1223)
.+-. .+ +++.||-. + +. +.+.| -+--..+
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~ 159 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDH 159 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHH
Confidence 0000 00 11112211 0 00 00101 0111235
Q ss_pred HHHHHHHHhc---------cCCCCCCccEEEEeecCCC-CCCCHHHHcccCceeeecCC-CHHHHHHHHHHHHhh
Q 000921 1043 MKNEFMVNWD---------GLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVILAK 1106 (1223)
Q Consensus 1043 Il~~LL~~LD---------gl~~k~~~rVLVIATTNrp-~~LD~ALlRRFd~~I~VplP-d~eeR~~ILr~~L~k 1106 (1223)
+++.||+.+. |+.-...-++++|||+|.- ..|-+-|+.||...|.+..| +.++|.+|+++-+.-
T Consensus 160 lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 160 LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 6666666553 3333345679999999964 55888999999999998776 678999999987653
No 240
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00033 Score=82.27 Aligned_cols=38 Identities=34% Similarity=0.616 Sum_probs=35.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~s 1022 (1223)
..|||.||.|+|||+||+.||+-+++||...+|..|..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQ 264 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQ 264 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhh
Confidence 57999999999999999999999999999999988654
No 241
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.63 E-value=0.00029 Score=88.47 Aligned_cols=135 Identities=16% Similarity=0.229 Sum_probs=95.1
Q ss_pred CCCCEEEEEcchhhhhcc--------Chh---HHHHHHHHhccCCC--CEEEEEeccCCCcccccCCCCCceeeccCcch
Q 000921 702 KSSPLIVFVKDIEKSLTG--------NND---AYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQ 768 (1223)
Q Consensus 702 ~~~plIlyi~Dvek~l~~--------~~~---~~~~~~~~l~~~~~--~~~ii~s~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1223)
+..|.||||+|++.+..+ +.+ ..+.|-..++.+.+ +|++||+.+.++
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~-------------------- 301 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD-------------------- 301 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChh--------------------
Confidence 368999999999997431 222 23333233444433 689999988422
Q ss_pred hhhccccCCCCcccccccccccHHHHHHHHh--hCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhhHHHHhhhC
Q 000921 769 TALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRN 846 (1223)
Q Consensus 769 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~--rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih~~kml~~~ 846 (1223)
.++ .+|-+ ||..+|+|.+|+.++|.+||+ .|+.+ .
T Consensus 302 ----------~lD-------------~Al~RpgRfdr~i~v~~Pd~~~R~~Il~----------------~~~~~----~ 338 (644)
T PRK10733 302 ----------VLD-------------PALLRPGRFDRQVVVGLPDVRGREQILK----------------VHMRR----V 338 (644)
T ss_pred ----------hcC-------------HHHhCCcccceEEEcCCCCHHHHHHHHH----------------HHhhc----C
Confidence 122 24544 899999999999999999999 44432 2
Q ss_pred CCCCC-CccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHH
Q 000921 847 GLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1223)
Q Consensus 847 ~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~l 907 (1223)
.+..+ ++..++..+..|++++|+.|++.|..++... ++..|+..++..+++.+
T Consensus 339 ~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~--------~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 339 PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG--------NKRVVSMVEFEKAKDKI 392 (644)
T ss_pred CCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc--------CCCcccHHHHHHHHHHH
Confidence 34444 7788999999999999999999998887742 23457888888777654
No 242
>PRK08118 topology modulation protein; Reviewed
Probab=97.63 E-value=0.00024 Score=74.71 Aligned_cols=100 Identities=14% Similarity=0.223 Sum_probs=65.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccchhhhcccccCCC-ChhHHHHHHHHHHHHHhccCCCCCCccEEE
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1064 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~skIDsI~g~R~s~-~e~e~~~rIl~~LL~~LDgl~~k~~~rVLV 1064 (1223)
-|++.||||+|||+||+.|+..++++++.++ .++...+.. ...+....++.+++ .+ .. +
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD---------~l~~~~~w~~~~~~~~~~~~~~~~---~~------~~--w 62 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD---------ALFWKPNWEGVPKEEQITVQNELV---KE------DE--W 62 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc---------hhhcccCCcCCCHHHHHHHHHHHh---cC------CC--E
Confidence 5899999999999999999999999988744 333221111 11112222333332 11 22 3
Q ss_pred EeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhh
Q 000921 1065 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1106 (1223)
Q Consensus 1065 IATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k 1106 (1223)
|.-.|....++.. +.++|..|++..|...-..++++..+..
T Consensus 63 VidG~~~~~~~~~-l~~~d~vi~Ld~p~~~~~~R~~~R~~~~ 103 (167)
T PRK08118 63 IIDGNYGGTMDIR-LNAADTIIFLDIPRTICLYRAFKRRVQY 103 (167)
T ss_pred EEeCCcchHHHHH-HHhCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 3444555555433 3479999999999998888888888763
No 243
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.61 E-value=0.0006 Score=87.26 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=84.4
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhh---cC----CCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCceeEe
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINI 1015 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~---k~----gl~~PprGILL~GPPGTGKT~LAkAIA~el-------g~pfI~V 1015 (1223)
.|.|.+.+|..|.-.+.........+. .+ ...+-...|||.|.||||||.+|+++++-. |.++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 689999999888544432221110000 00 001222479999999999999999999864 2344444
Q ss_pred ecccccchhhhccccc---------CCCC-----hhHHH-HHHHHHHHHHhcc---------CCCCCCccEEEEeecCCC
Q 000921 1016 SMSSITSKVDSMLGRR---------ENPG-----EHEAM-RKMKNEFMVNWDG---------LRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1016 s~seL~skIDsI~g~R---------~s~~-----e~e~~-~rIl~~LL~~LDg---------l~~k~~~rVLVIATTNrp 1071 (1223)
.+.......|...+.. .+.| +-+.+ ......|+..|+. +...-+.++-||||+|..
T Consensus 531 gLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~ 610 (915)
T PTZ00111 531 GLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPI 610 (915)
T ss_pred cccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCc
Confidence 3332221111111100 0000 11111 1223334444432 222234678999999974
Q ss_pred -------------CCCCHHHHcccCceee-ecCCCHHHHHHHHHHHH
Q 000921 1072 -------------FDLDEAVVRRLPRRLM-VNLPDAPNREKIIRVIL 1104 (1223)
Q Consensus 1072 -------------~~LD~ALlRRFd~~I~-VplPd~eeR~~ILr~~L 1104 (1223)
-.|++++++|||..+. +..|+.+.=..|-++++
T Consensus 611 ~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 611 NSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred ccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 2377899999988755 56777766666655554
No 244
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.00018 Score=83.38 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=74.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------ceeEeecccc---------cchhhhc
Q 000921 982 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSI---------TSKVDSM 1027 (1223)
Q Consensus 982 ~PprGILL~GPPGTGKT~LAkAIA~elg~-------------------------pfI~Vs~seL---------~skIDsI 1027 (1223)
+.+.++||+||+|+|||++|+++|+.+-+ .|+.+.+..- .-+||.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34579999999999999999999998732 2555554210 0013322
Q ss_pred -------cc-c-cCC------CChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCC
Q 000921 1028 -------LG-R-REN------PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPD 1092 (1223)
Q Consensus 1028 -------~g-~-R~s------~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd 1092 (1223)
.- . .+. ...+.......+.|+..|+... ..+.+|.+|..++.+.+.+++|+ ..+.|+.|+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~SRc-~~~~~~~~~ 173 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKSRC-RKMVLPAPS 173 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHHHh-hhhcCCCCC
Confidence 10 0 000 0011112345567777777753 23556668888899999999999 778899999
Q ss_pred HHHHHHHHHH
Q 000921 1093 APNREKIIRV 1102 (1223)
Q Consensus 1093 ~eeR~~ILr~ 1102 (1223)
.++....|..
T Consensus 174 ~~~~~~~L~~ 183 (325)
T PRK08699 174 HEEALAYLRE 183 (325)
T ss_pred HHHHHHHHHh
Confidence 8887766653
No 245
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.59 E-value=0.00037 Score=83.83 Aligned_cols=181 Identities=20% Similarity=0.272 Sum_probs=102.3
Q ss_pred cccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch-
Q 000921 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 1023 (1223)
Q Consensus 948 fdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk- 1023 (1223)
+.++.|-....+.+.+.+.. +. .....+|+.|++|||||++|++|.... +.||+.++|..+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~-------~~-----~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR-------LS-----RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHH-------Hh-----ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 44666766666666555432 11 123579999999999999999999986 579999999887543
Q ss_pred hhh-cccccC-----------------CCC------hhHHHHHHHHHHHHHhccCC--C-----CCCccEEEEeecCCC-
Q 000921 1024 VDS-MLGRRE-----------------NPG------EHEAMRKMKNEFMVNWDGLR--T-----KDKERVLVLAATNRP- 1071 (1223)
Q Consensus 1024 IDs-I~g~R~-----------------s~~------e~e~~~rIl~~LL~~LDgl~--~-----k~~~rVLVIATTNrp- 1071 (1223)
++. ++|... .++ -+.........|+..++.-. . ...-.+-||+||+..
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l 284 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNL 284 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCH
Confidence 222 222110 011 01111223334555444321 0 011346788888753
Q ss_pred ------CCCCHHHHcccCceeeecCCCHHHH----HHHHHHHHhhccc----C----CcccHHHHHHHccCCcHHHHHHH
Q 000921 1072 ------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAKEEL----A----SDVDLEGIANMADGYSGSDLKNL 1133 (1223)
Q Consensus 1072 ------~~LD~ALlRRFd~~I~VplPd~eeR----~~ILr~~L~k~~l----~----~dvDL~~LA~~TeGySGaDL~~L 1133 (1223)
..+.+.+..||. .+.+.+|...+| ..|++.++.+... . ....+..|....-.-+-++|+++
T Consensus 285 ~~~~~~~~~~~~L~~~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~ 363 (469)
T PRK10923 285 EQRVQEGKFREDLFHRLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 (469)
T ss_pred HHHHHcCCchHHHHHHhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHH
Confidence 245567777772 345555554444 4466666654311 1 12234555555544567899999
Q ss_pred HHHHHHHH
Q 000921 1134 CVTAAHCP 1141 (1223)
Q Consensus 1134 ~~~Aa~~a 1141 (1223)
++.|+..+
T Consensus 364 i~~~~~~~ 371 (469)
T PRK10923 364 CRWLTVMA 371 (469)
T ss_pred HHHHHHhC
Confidence 98887643
No 246
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.58 E-value=0.00061 Score=81.96 Aligned_cols=183 Identities=20% Similarity=0.312 Sum_probs=106.9
Q ss_pred CcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch
Q 000921 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 1023 (1223)
Q Consensus 947 tfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk 1023 (1223)
.+.+++|-....+++++.+.. . ......||++|.+||||-++|++|-... +.|||.|+|..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~k-------v-----A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK-------V-----APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 455788888888888887754 1 1223579999999999999999999887 569999999887654
Q ss_pred -hhh-cccccCC-----------------CC-----h-hHHHHHHHHHHHHHhc-----cCCCC--CCccEEEEeecCCC
Q 000921 1024 -VDS-MLGRREN-----------------PG-----E-HEAMRKMKNEFMVNWD-----GLRTK--DKERVLVLAATNRP 1071 (1223)
Q Consensus 1024 -IDs-I~g~R~s-----------------~~-----e-~e~~~rIl~~LL~~LD-----gl~~k--~~~rVLVIATTNrp 1071 (1223)
+++ |||-... +| + .+.-..+...||..|. .+... -+-.|-||+|||+.
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~d 286 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRD 286 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcC
Confidence 444 3331110 00 0 0111122233333332 22111 12347899999863
Q ss_pred C--C-----CCHHHHcccCceeeecCCCHHHHH----HHHHHHHhhcc----c-CCcccHHHHHHHcc-CC--cHHHHHH
Q 000921 1072 F--D-----LDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEE----L-ASDVDLEGIANMAD-GY--SGSDLKN 1132 (1223)
Q Consensus 1072 ~--~-----LD~ALlRRFd~~I~VplPd~eeR~----~ILr~~L~k~~----l-~~dvDL~~LA~~Te-Gy--SGaDL~~ 1132 (1223)
= . .-+.|.-|+ .++.+.+|...+|. -++++++.+.. . ...++-+.++.+.. .+ +-++|+|
T Consensus 287 L~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N 365 (464)
T COG2204 287 LEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELEN 365 (464)
T ss_pred HHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHH
Confidence 1 1 222333366 45667777776663 45555555421 1 23445555555443 23 4478888
Q ss_pred HHHHHHHHHH
Q 000921 1133 LCVTAAHCPI 1142 (1223)
Q Consensus 1133 L~~~Aa~~ai 1142 (1223)
++++++..+-
T Consensus 366 ~ver~~il~~ 375 (464)
T COG2204 366 VVERAVILSE 375 (464)
T ss_pred HHHHHHhcCC
Confidence 8887775543
No 247
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.54 E-value=0.0028 Score=77.56 Aligned_cols=47 Identities=36% Similarity=0.474 Sum_probs=34.9
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
..|.++.|...+++.+.-.+ .....++|+||||||||+|++.|+..+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccC
Confidence 36778888777666543111 123679999999999999999999765
No 248
>PRK06526 transposase; Provisional
Probab=97.53 E-value=8.2e-05 Score=83.39 Aligned_cols=39 Identities=31% Similarity=0.560 Sum_probs=31.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
..+++|+||||||||+||.+|+.++ |..++.+++.+++.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~ 139 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA 139 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHH
Confidence 3689999999999999999999886 66766666665443
No 249
>PRK06921 hypothetical protein; Provisional
Probab=97.51 E-value=0.00014 Score=82.03 Aligned_cols=37 Identities=35% Similarity=0.505 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCceeEeecccc
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSI 1020 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el----g~pfI~Vs~seL 1020 (1223)
..+++|+||||||||+|+.|||+++ |..++.++..++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l 157 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG 157 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH
Confidence 3689999999999999999999986 567777776554
No 250
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.50 E-value=0.0022 Score=72.58 Aligned_cols=91 Identities=13% Similarity=0.179 Sum_probs=61.1
Q ss_pred CCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHH
Q 000921 1070 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1148 (1223)
Q Consensus 1070 rp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~-dvDL~~LA~~TeGySGaDL~~L~~~Aa~~aireilek 1148 (1223)
.|+-++-.++.|. .+|..-+.+.++..+||+.-+..+.+.- +..++.|......-+-+---+|+..|.+.+.++
T Consensus 338 SphGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr---- 412 (454)
T KOG2680|consen 338 SPHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR---- 412 (454)
T ss_pred CCCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh----
Confidence 4778899999988 6677777889999999999887765442 222444444444334444456677777776665
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCHHHHHHHHHhc
Q 000921 1149 EKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1187 (1223)
Q Consensus 1149 ~kk~~~~~~~e~~~~~~~~~~~~~rpLT~eDF~~ALe~v 1187 (1223)
....+..+|+..+.+-+
T Consensus 413 ----------------------k~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 413 ----------------------KGKVVEVDDIERVYRLF 429 (454)
T ss_pred ----------------------cCceeehhHHHHHHHHH
Confidence 23457778888887654
No 251
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00061 Score=86.02 Aligned_cols=156 Identities=18% Similarity=0.337 Sum_probs=100.1
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceeEe
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el----------g~pfI~V 1015 (1223)
..++-++|-++-++.+.+++.. + ..+.-+|.|+||+|||.++..+|... +..++.+
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R---------R-----~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR---------R-----TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc---------c-----CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 3455678888887777776643 1 12456899999999999999999886 4557777
Q ss_pred ecccccch---------------------------hhhc---ccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 1016 SMSSITSK---------------------------VDSM---LGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 1016 s~seL~sk---------------------------IDsI---~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
++..+... ||.| .|.-...+......+++...| .++.+-+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL---------ARGeL~~I 303 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL---------ARGELRCI 303 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH---------hcCCeEEE
Confidence 77665432 4443 333222221111123333333 23557777
Q ss_pred eecC-----CCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccC-----CcccHHHHHHHccCC
Q 000921 1066 AATN-----RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1125 (1223)
Q Consensus 1066 ATTN-----rp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~-----~dvDL~~LA~~TeGy 1125 (1223)
|+|. ..-.=|+||-||| ..|.|.-|+.++-..||+-+-.+.... .|..+...+.+++-|
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 7774 3556789999999 789999999999999999876554222 233345555544433
No 252
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.48 E-value=0.001 Score=79.51 Aligned_cols=156 Identities=22% Similarity=0.302 Sum_probs=88.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch-hhh-ccccc-----------------CCCC------h
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-VDS-MLGRR-----------------ENPG------E 1036 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk-IDs-I~g~R-----------------~s~~------e 1036 (1223)
..+|++|++||||+++|+++...+ +.+|+.++|..+... ++. ++|.. ...+ -
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i 246 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEI 246 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEech
Confidence 579999999999999999998775 579999999887544 222 22210 0000 0
Q ss_pred hHHHHHHHHHHHHHhccCC-----C--CCCccEEEEeecCCC-------CCCCHHHHcccCceeeecCCCHHHHHH----
Q 000921 1037 HEAMRKMKNEFMVNWDGLR-----T--KDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK---- 1098 (1223)
Q Consensus 1037 ~e~~~rIl~~LL~~LDgl~-----~--k~~~rVLVIATTNrp-------~~LD~ALlRRFd~~I~VplPd~eeR~~---- 1098 (1223)
......+...|+..++.-. . .....+.||+|||.. ..+.+.+..||. .+.+.+|...+|.+
T Consensus 247 ~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~-~~~i~~ppLreR~~di~~ 325 (457)
T PRK11361 247 GEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN-VIHLILPPLRDRREDISL 325 (457)
T ss_pred hhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChhhchhhHHH
Confidence 1111233344555544311 0 011347888998864 234445555552 36677777776643
Q ss_pred HHHHHHhhccc----C-Cccc---HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 000921 1099 IIRVILAKEEL----A-SDVD---LEGIANMADGYSGSDLKNLCVTAAHCP 1141 (1223)
Q Consensus 1099 ILr~~L~k~~l----~-~dvD---L~~LA~~TeGySGaDL~~L~~~Aa~~a 1141 (1223)
+++.++.+... . ..++ +..|....-.-+-++|+++++.|+..+
T Consensus 326 l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 326 LANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred HHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 44555544311 1 1233 344444443446788888888887543
No 253
>PRK13949 shikimate kinase; Provisional
Probab=97.47 E-value=0.00038 Score=73.28 Aligned_cols=98 Identities=20% Similarity=0.349 Sum_probs=59.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch-----hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCC
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-----VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1059 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk-----IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~ 1059 (1223)
+.|+|.||||+|||++++.||..++++|+..+. ++.. +..++...+ ....+.+-..++..+...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~--~i~~~~~~~~~~~~~~~g----~~~fr~~e~~~l~~l~~~----- 70 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF--FIENRFHKTVGDIFAERG----EAVFRELERNMLHEVAEF----- 70 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccH--HHHHHHCccHHHHHHHhC----HHHHHHHHHHHHHHHHhC-----
Confidence 369999999999999999999999999987552 2211 333333221 123344555555554332
Q ss_pred ccEEEEeecCCCCCCC--HHHHcccCceeeecCCCHH
Q 000921 1060 ERVLVLAATNRPFDLD--EAVVRRLPRRLMVNLPDAP 1094 (1223)
Q Consensus 1060 ~rVLVIATTNrp~~LD--~ALlRRFd~~I~VplPd~e 1094 (1223)
++ .||++....-... ..++++++.+|++..|...
T Consensus 71 ~~-~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~ 106 (169)
T PRK13949 71 ED-VVISTGGGAPCFFDNMELMNASGTTVYLKVSPEV 106 (169)
T ss_pred CC-EEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHH
Confidence 12 4555543322211 3566677888988887654
No 254
>PRK07261 topology modulation protein; Provisional
Probab=97.46 E-value=0.00055 Score=72.11 Aligned_cols=100 Identities=15% Similarity=0.216 Sum_probs=63.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEeecccccchhhhcccccCCC-ChhHHHHHHHHHHHHHhccCCCCCCccEEEE
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1065 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~skIDsI~g~R~s~-~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVI 1065 (1223)
|++.|+||+|||+||+.|+..++.+++.++. +.-..... ...+.....+..+ +. .++ .||
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~---------~~~~~~~~~~~~~~~~~~~~~~---~~------~~~-wIi 63 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT---------LHFQPNWQERDDDDMIADISNF---LL------KHD-WII 63 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC---------EEeccccccCCHHHHHHHHHHH---Hh------CCC-EEE
Confidence 8899999999999999999999999876443 21111110 0111111122222 21 133 344
Q ss_pred eecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhh
Q 000921 1066 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1106 (1223)
Q Consensus 1066 ATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k 1106 (1223)
-.|....+-+..+.++|..|.+..|......++++..+..
T Consensus 64 -dg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~ 103 (171)
T PRK07261 64 -DGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKY 103 (171)
T ss_pred -cCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 3334443434556689999999999998889999887753
No 255
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.42 E-value=0.0017 Score=78.50 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=41.7
Q ss_pred CcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 947 tfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
+.+++.-...=+.++++++.. ...|.. + -+.+-+||.||+|||||+.++.||+++|..++..+
T Consensus 80 t~eeLAVHkkKI~eVk~WL~~----~~~~~~-~--l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 80 TLEELAVHKKKISEVKQWLKQ----VAEFTP-K--LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred cHHHHhhhHHhHHHHHHHHHH----HHHhcc-C--CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 455555554444455544431 111211 1 12356889999999999999999999999998765
No 256
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.37 E-value=0.00061 Score=77.83 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=89.9
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------eeE
Q 000921 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FIN 1014 (1223)
Q Consensus 941 ~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p------fI~ 1014 (1223)
.+...-.++|+++.+++...+.+++.. . .. .++|+|||||||||....+.|..+-.+ +..
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~~~----------~---~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYSGM----------P---GL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhccC----------C---CC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 344456778899999999888887432 1 22 289999999999999999999998553 112
Q ss_pred eecccccch------hhhc--cccc--CCC---------ChhHH-HHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCC
Q 000921 1015 ISMSSITSK------VDSM--LGRR--ENP---------GEHEA-MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1074 (1223)
Q Consensus 1015 Vs~seL~sk------IDsI--~g~R--~s~---------~e~e~-~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~L 1074 (1223)
++.++=.+- +-.+ ...+ ... .+.++ .+...++|-..+..+. .++-++..+|.+..+
T Consensus 99 lnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t----~n~rF~ii~n~~~ki 174 (360)
T KOG0990|consen 99 LNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT----ANTRFATISNPPQKI 174 (360)
T ss_pred hhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc----cceEEEEeccChhhc
Confidence 223221110 0000 0000 000 11111 2223333333333332 445555778999999
Q ss_pred CHHHHcccCceeeecCCCHHHHHHHHHHHHhhccc
Q 000921 1075 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL 1109 (1223)
Q Consensus 1075 D~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l 1109 (1223)
.+++++|| ..+.+...+..+-..++.+++.....
T Consensus 175 ~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 175 HPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred Cchhhccc-ccCCCCCCChhhhhhHHHHHHhcchh
Confidence 99999998 45666666777777777777765443
No 257
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00047 Score=81.95 Aligned_cols=127 Identities=24% Similarity=0.343 Sum_probs=90.7
Q ss_pred HHHHHHHHhhcccCCCCEEEEEcchhhhhcc------------ChhHHHHHHHHhccCCCCEEEEEeccCCCcccccCCC
Q 000921 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG------------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHP 756 (1223)
Q Consensus 689 ~i~~L~eVl~s~s~~~plIlyi~Dvek~l~~------------~~~~~~~~~~~l~~~~~~~~ii~s~~~~~~~~~~~~~ 756 (1223)
++-+||+|... .+|-|+||.|+++.|+. .++|..-+--+..+-.+.|++||+.+.
T Consensus 233 ~vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~---------- 299 (428)
T KOG0740|consen 233 LVRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR---------- 299 (428)
T ss_pred HHHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCC----------
Confidence 47899999988 89999999999999982 122222111122222348999999884
Q ss_pred CCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchh
Q 000921 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 836 (1223)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ 836 (1223)
|+ ++++++-+||---+.|.+||++.|.++|++.|.++
T Consensus 300 --------------------P~-------------e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~---------- 336 (428)
T KOG0740|consen 300 --------------------PW-------------ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ---------- 336 (428)
T ss_pred --------------------ch-------------HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC----------
Confidence 22 33457778999999999999999999999333332
Q ss_pred hhHHHHhhhCCCCCCCccccccccccCChHHHHHHHhhhhhhh
Q 000921 837 ISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHH 879 (1223)
Q Consensus 837 ih~~kml~~~~L~cddL~~La~~tk~~sgaeIe~LV~sA~S~a 879 (1223)
.+.+...|+..++..|..|++.+|..+++.|..--
T Consensus 337 --------~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p 371 (428)
T KOG0740|consen 337 --------PNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGP 371 (428)
T ss_pred --------CCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCc
Confidence 12333346677778888899999999998876543
No 258
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.30 E-value=0.0017 Score=76.13 Aligned_cols=142 Identities=20% Similarity=0.306 Sum_probs=95.7
Q ss_pred HHHHHHHhhcccCCCCEEEEEcchhhhhcc--------Chh----HHHHHHHHhccC--CCCEEEEEeccCCCcccccCC
Q 000921 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NND----AYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSH 755 (1223)
Q Consensus 690 i~~L~eVl~s~s~~~plIlyi~Dvek~l~~--------~~~----~~~~~~~~l~~~--~~~~~ii~s~~~~~~~~~~~~ 755 (1223)
+..+|+.... ..|.||||+|++.+... ..+ ++.++. .++.+ .++++||++.+..+.
T Consensus 204 i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~-~ld~~~~~~~v~vI~ttn~~~~------ 273 (364)
T TIGR01242 204 VREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLA-ELDGFDPRGNVKVIAATNRPDI------ 273 (364)
T ss_pred HHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHH-HhhCCCCCCCEEEEEecCChhh------
Confidence 3445555443 68999999999997542 122 223222 23333 358888888874211
Q ss_pred CCCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHH--hhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhcc
Q 000921 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQIS--RLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQ 833 (1223)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~--~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~ 833 (1223)
++ .+|- -||...|+|.+|+.+.|.+||.
T Consensus 274 ------------------------ld-------------~al~r~grfd~~i~v~~P~~~~r~~Il~------------- 303 (364)
T TIGR01242 274 ------------------------LD-------------PALLRPGRFDRIIEVPLPDFEGRLEILK------------- 303 (364)
T ss_pred ------------------------CC-------------hhhcCcccCceEEEeCCcCHHHHHHHHH-------------
Confidence 11 1232 2778889999999999999998
Q ss_pred chhhhHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHH
Q 000921 834 SNIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNI 906 (1223)
Q Consensus 834 ~n~ih~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~ 906 (1223)
.|+.++ .+..+ ++..++..+..|++++|..++..|...++.+ +...|+.+++..++..
T Consensus 304 ---~~~~~~----~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~--------~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 304 ---IHTRKM----KLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE--------ERDYVTMDDFIKAVEK 362 (364)
T ss_pred ---HHHhcC----CCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------CCCccCHHHHHHHHHH
Confidence 444322 23333 7888999999999999999999988887742 2345888888887765
No 259
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0014 Score=76.47 Aligned_cols=131 Identities=24% Similarity=0.373 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHhhcccCCCCEEEEEcchhhhhc-----cChhHHHHHHHHh----ccCCC---C---EEEEEeccCCCcc
Q 000921 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT-----GNNDAYGALKSKL----ENLPS---N---VVVIGSHTQLDSR 750 (1223)
Q Consensus 686 ~k~~i~~L~eVl~s~s~~~plIlyi~Dvek~l~-----~~~~~~~~~~~~l----~~~~~---~---~~ii~s~~~~~~~ 750 (1223)
|| ++--|||+.-- ..|-++||++|+.+.. +--|....||..| +-+.+ + |.|+.+++
T Consensus 290 EK-lvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN----- 360 (491)
T KOG0738|consen 290 EK-LVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN----- 360 (491)
T ss_pred HH-HHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC-----
Confidence 44 46778888866 7899999999999554 1223344444433 22221 3 55555555
Q ss_pred cccCCCCCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHHHHHHHh
Q 000921 751 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETL 830 (1223)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l 830 (1223)
+|.++| ++|-+|||-.|.|.||+.++|-..++
T Consensus 361 -------------------------~PWdiD-------------EAlrRRlEKRIyIPLP~~~~R~~Li~---------- 392 (491)
T KOG0738|consen 361 -------------------------FPWDID-------------EALRRRLEKRIYIPLPDAEARSALIK---------- 392 (491)
T ss_pred -------------------------CCcchH-------------HHHHHHHhhheeeeCCCHHHHHHHHH----------
Confidence 455554 59999999999999999999977776
Q ss_pred hccchhhhHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhhhhhcc
Q 000921 831 KGQSNIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1223)
Q Consensus 831 ~~~~n~ih~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~ 883 (1223)
+.+. .-.++.+ +|+.|+-.+..|+|++|..+.+-|.-+++-++
T Consensus 393 ------~~l~----~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 393 ------ILLR----SVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred ------Hhhc----cccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 3332 2233444 88899999999999999999999987777554
No 260
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.25 E-value=0.00034 Score=85.70 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=48.3
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCceeEeec
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 1017 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el-g~pfI~Vs~ 1017 (1223)
--|+|+.|++++++.|.+++.... .++....+-++|.||||+|||+||++||..+ .+|++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa--------~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAA--------QGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHH--------HhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 458899999999999998874311 1222344678999999999999999999987 356665543
No 261
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.22 E-value=0.0034 Score=75.33 Aligned_cols=180 Identities=19% Similarity=0.248 Sum_probs=97.4
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch-hh
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-VD 1025 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk-ID 1025 (1223)
.+.|.......+.+.+.. + ......+++.|.+||||+++|+++.... +.||+.++|..+.+. ++
T Consensus 135 ~lig~s~~~~~v~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGR-------L-----SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ceeecCHHHHHHHHHHHH-------H-----hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 456666555555554432 1 1122579999999999999999998875 579999999877443 22
Q ss_pred h-cccccC-----------------CCC------hhHHHHHHHHHHHHHhccCC--C-----CCCccEEEEeecCCC---
Q 000921 1026 S-MLGRRE-----------------NPG------EHEAMRKMKNEFMVNWDGLR--T-----KDKERVLVLAATNRP--- 1071 (1223)
Q Consensus 1026 s-I~g~R~-----------------s~~------e~e~~~rIl~~LL~~LDgl~--~-----k~~~rVLVIATTNrp--- 1071 (1223)
+ ++|... .++ -+.....+...|+..++.-. . .....+-||+||+..
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~ 282 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEA 282 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHH
Confidence 2 222110 000 01111123334444443211 0 011246678888654
Q ss_pred ----CCCCHHHHcccC-ceeeecCCC--HHHHHHHHHHHHhhcccC-----Cccc---HHHHHHHccCCcHHHHHHHHHH
Q 000921 1072 ----FDLDEAVVRRLP-RRLMVNLPD--APNREKIIRVILAKEELA-----SDVD---LEGIANMADGYSGSDLKNLCVT 1136 (1223)
Q Consensus 1072 ----~~LD~ALlRRFd-~~I~VplPd--~eeR~~ILr~~L~k~~l~-----~dvD---L~~LA~~TeGySGaDL~~L~~~ 1136 (1223)
..+.+.+..|+. ..|++|+.. .++...+++.++...... ..++ +..|....-.-+-++|+++++.
T Consensus 283 ~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~ 362 (463)
T TIGR01818 283 LVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRW 362 (463)
T ss_pred HHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 244556666664 355555544 345566666666543111 1233 3444444323355889999888
Q ss_pred HHHHH
Q 000921 1137 AAHCP 1141 (1223)
Q Consensus 1137 Aa~~a 1141 (1223)
|+..+
T Consensus 363 ~~~~~ 367 (463)
T TIGR01818 363 LTVMA 367 (463)
T ss_pred HHHhC
Confidence 87654
No 262
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.22 E-value=0.00077 Score=76.39 Aligned_cols=119 Identities=23% Similarity=0.370 Sum_probs=67.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-c--eeEeecccccch------------------------------hhhccccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGA-N--FINISMSSITSK------------------------------VDSMLGRR 1031 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~-p--fI~Vs~seL~sk------------------------------IDsI~g~R 1031 (1223)
+.+||.||+|||||++++..-.++.- . ...+.++..... ||++--..
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQ 113 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S-
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCC
Confidence 68999999999999999987766532 2 223444331110 45542111
Q ss_pred -CCCChhHHHHHHHHHHHHHhccCCCC------CCccEEEEeecCCC---CCCCHHHHcccCceeeecCCCHHHHHHHHH
Q 000921 1032 -ENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPNREKIIR 1101 (1223)
Q Consensus 1032 -~s~~e~e~~~rIl~~LL~~LDgl~~k------~~~rVLVIATTNrp---~~LD~ALlRRFd~~I~VplPd~eeR~~ILr 1101 (1223)
..-+... .-.++.+++.. .|.... .=..+.+|||++.. ..|++.++|.| ..+.++.|+.+.-..|+.
T Consensus 114 ~d~ygtq~-~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~~sl~~If~ 190 (272)
T PF12775_consen 114 PDKYGTQP-PIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSDESLNTIFS 190 (272)
T ss_dssp --TTS--H-HHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TCCHHHHHHH
T ss_pred CCCCCCcC-HHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCChHHHHHHHH
Confidence 1112111 12344444432 122211 11357888888753 24778888888 689999999999999999
Q ss_pred HHHhh
Q 000921 1102 VILAK 1106 (1223)
Q Consensus 1102 ~~L~k 1106 (1223)
.++..
T Consensus 191 ~il~~ 195 (272)
T PF12775_consen 191 SILQS 195 (272)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88865
No 263
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.22 E-value=0.0004 Score=67.63 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAG 1009 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg 1009 (1223)
|.||||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 264
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.19 E-value=0.00035 Score=71.79 Aligned_cols=33 Identities=30% Similarity=0.544 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceeEe
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg~pfI~V 1015 (1223)
++..|+|+||||||||++|++||..++++|+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 346899999999999999999999999998853
No 265
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00026 Score=79.84 Aligned_cols=132 Identities=25% Similarity=0.364 Sum_probs=96.1
Q ss_pred CCcchhhHHHHHHHHHHhhcccCCCCEEEEEcchhhhhcc-----ChhHHHHHHHHh-ccC------CCCEEEEEeccCC
Q 000921 680 SLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKL-ENL------PSNVVVIGSHTQL 747 (1223)
Q Consensus 680 ~~~~~~~k~~i~~L~eVl~s~s~~~plIlyi~Dvek~l~~-----~~~~~~~~~~~l-~~~------~~~~~ii~s~~~~ 747 (1223)
+-|--...-++.-|||+.-+ +.|-|+||.+|+ ++|| -.|....+|..| =+. ..+|+|+|+.+.
T Consensus 204 SKWmGESEkLVknLFemARe---~kPSIIFiDEiD-slcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi- 278 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARE---NKPSIIFIDEID-SLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI- 278 (439)
T ss_pred HHHhccHHHHHHHHHHHHHh---cCCcEEEeehhh-hhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCC-
Confidence 34532233457889999988 999999999999 5774 344555554433 122 338888888873
Q ss_pred CcccccCCCCCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHHHHH
Q 000921 748 DSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDV 827 (1223)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~~d~ 827 (1223)
|. .++.+|-+||+-.|.|.||+...|...|+
T Consensus 279 -----------------------------Pw-------------~LDsAIRRRFekRIYIPLPe~~AR~~MF~------- 309 (439)
T KOG0739|consen 279 -----------------------------PW-------------VLDSAIRRRFEKRIYIPLPEAHARARMFK------- 309 (439)
T ss_pred -----------------------------ch-------------hHHHHHHHHhhcceeccCCcHHHhhhhhe-------
Confidence 11 22458999999999999999999999998
Q ss_pred HHhhccchhhhHHHHhhhCCCCCCCccccccccccCChHHHHHHHhhhh
Q 000921 828 ETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWAL 876 (1223)
Q Consensus 828 ~~l~~~~n~ih~~kml~~~~L~cddL~~La~~tk~~sgaeIe~LV~sA~ 876 (1223)
+|+- -+-+.|...|+.+|+.+|..|+|++|.-+|+.|+
T Consensus 310 ---------lhlG--~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 310 ---------LHLG--DTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred ---------eccC--CCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 5552 2234455669999999999999999888777655
No 266
>PRK09183 transposase/IS protein; Provisional
Probab=97.18 E-value=0.00059 Score=76.67 Aligned_cols=37 Identities=38% Similarity=0.570 Sum_probs=30.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~ 1021 (1223)
.+++|+||||||||+||.+|+.++ |..+..+++.++.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 579999999999999999998764 7777777766554
No 267
>PRK06217 hypothetical protein; Validated
Probab=97.17 E-value=0.0011 Score=70.18 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=58.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccchhhhcccccCC-----CChhHHHHHHHHHHHHHhccCCCCCCc
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRREN-----PGEHEAMRKMKNEFMVNWDGLRTKDKE 1060 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~skIDsI~g~R~s-----~~e~e~~~rIl~~LL~~LDgl~~k~~~ 1060 (1223)
-|+|.|+||+|||++|++||..++++++.++ .+...... ....+. ....++..+. .++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D---------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~ 65 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD---------DYFWLPTDPPFTTKRPPEE---RLRLLLEDLR-----PRE 65 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC---------ceeeccCCCCccccCCHHH---HHHHHHHHHh-----cCC
Confidence 4899999999999999999999999987643 22211110 011111 1112222221 113
Q ss_pred cEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHH
Q 000921 1061 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1103 (1223)
Q Consensus 1061 rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~ 1103 (1223)
..+|- .+... ....+..+++..|++..|......++....
T Consensus 66 ~~vi~--G~~~~-~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 66 GWVLS--GSALG-WGDPLEPLFDLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred CEEEE--ccHHH-HHHHHHhhCCEEEEEECCHHHHHHHHHcCc
Confidence 33333 33222 223455689999999999888777777653
No 268
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0017 Score=81.72 Aligned_cols=156 Identities=21% Similarity=0.301 Sum_probs=114.0
Q ss_pred CCcchhhHHH------HHHHHHHhhcccCCCCEEEEEcchhhh---------hccChhHHHHHHHHhccCCC-----CEE
Q 000921 680 SLGDEVDKLA------INELFEVALNESKSSPLIVFVKDIEKS---------LTGNNDAYGALKSKLENLPS-----NVV 739 (1223)
Q Consensus 680 ~~~~~~~k~~------i~~L~eVl~s~s~~~plIlyi~Dvek~---------l~~~~~~~~~~~~~l~~~~~-----~~~ 739 (1223)
++.+|.|-+- +..||..... ..|-|+||+++.-. ..+++|.-..|-..|-.++| .||
T Consensus 376 SGSEFvE~~~g~~asrvr~lf~~ar~---~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi 452 (774)
T KOG0731|consen 376 SGSEFVEMFVGVGASRVRDLFPLARK---NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVI 452 (774)
T ss_pred chHHHHHHhcccchHHHHHHHHHhhc---cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEE
Confidence 4455665554 7888888876 89999999999753 23556655555555555544 799
Q ss_pred EEEeccCCCcccccCCCCCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHH--hhCCCeEEEcCCchhhHHH
Q 000921 740 VIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQIS--RLFPNKVTIQLPQDEALLS 817 (1223)
Q Consensus 740 ii~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~--~rfe~~VeI~lPdeegrl~ 817 (1223)
+|++++..|. ||. +|- =||.-+|.|.+|+..+|.+
T Consensus 453 ~~a~tnr~d~----------------------ld~---------------------allrpGRfdr~i~i~~p~~~~r~~ 489 (774)
T KOG0731|consen 453 VLAATNRPDI----------------------LDP---------------------ALLRPGRFDRQIQIDLPDVKGRAS 489 (774)
T ss_pred EEeccCCccc----------------------cCH---------------------HhcCCCccccceeccCCchhhhHH
Confidence 9999986443 221 111 1678899999999999999
Q ss_pred HHHHHHHHHHHHhhccchhhhHHHHhhhCCCCCCCccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecc
Q 000921 818 DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKIST 897 (1223)
Q Consensus 818 iwk~ql~~d~~~l~~~~n~ih~~kml~~~~L~cddL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~ 897 (1223)
|++ .|.++.... .+..++..||.+|..|+|++|.-|++.|...+.. ...-.|..
T Consensus 490 i~~----------------~h~~~~~~~--~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r--------~~~~~i~~ 543 (774)
T KOG0731|consen 490 ILK----------------VHLRKKKLD--DEDVDLSKLASLTPGFSGADLANLCNEAALLAAR--------KGLREIGT 543 (774)
T ss_pred HHH----------------HHhhccCCC--cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHH--------hccCccch
Confidence 999 787654333 3444888899999999999999999999888774 22345777
Q ss_pred hhHHHHHHHH
Q 000921 898 ESIMYGLNIL 907 (1223)
Q Consensus 898 esl~~~l~~l 907 (1223)
.++.++++.+
T Consensus 544 ~~~~~a~~Rv 553 (774)
T KOG0731|consen 544 KDLEYAIERV 553 (774)
T ss_pred hhHHHHHHHH
Confidence 8888888754
No 269
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.15 E-value=0.0018 Score=71.83 Aligned_cols=110 Identities=25% Similarity=0.290 Sum_probs=60.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch------------------hhhcccccCCCChhHHHHHHHHH
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK------------------VDSMLGRRENPGEHEAMRKMKNE 1046 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk------------------IDsI~g~R~s~~e~e~~~rIl~~ 1046 (1223)
.+-.++||.|||||..++++|+.+|.+++.++|++-++. +|++- | -+.+....+.++
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefn--r---l~~~vLS~i~~~ 107 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFN--R---LSEEVLSVISQQ 107 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCC--C---SSHHHHHHHHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhh--h---hhHHHHHHHHHH
Confidence 467789999999999999999999999999999986654 33331 1 122333323222
Q ss_pred HHHHhccCCCCC------------CccEEEEeecC----CCCCCCHHHHcccCceeeecCCCHHHHHHHH
Q 000921 1047 FMVNWDGLRTKD------------KERVLVLAATN----RPFDLDEAVVRRLPRRLMVNLPDAPNREKII 1100 (1223)
Q Consensus 1047 LL~~LDgl~~k~------------~~rVLVIATTN----rp~~LD~ALlRRFd~~I~VplPd~eeR~~IL 1100 (1223)
+-...+.+..+. +...-++.|.| ....|++.++.-| |.+.+-.||.....+++
T Consensus 108 i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 108 IQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred HHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 222222221111 12234555555 3456888888888 88999999876655444
No 270
>PRK13947 shikimate kinase; Provisional
Probab=97.14 E-value=0.0018 Score=67.19 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
.|+|.|+||||||++|+.||..+|++|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997644
No 271
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.12 E-value=0.0017 Score=79.97 Aligned_cols=88 Identities=30% Similarity=0.376 Sum_probs=74.8
Q ss_pred cceeEEccCCccceeecCCCCCccceEEEEeecCCc--------ceEEEEEecCC-ceEEEcCeecCCCceEEeeCCCEE
Q 000921 151 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGP--------SGALLEITGGK-GEVEVNGNVHPKDSQVVLRGGDEL 221 (1223)
Q Consensus 151 ~~~~tvG~~~~cd~~l~d~~~s~~~C~l~~~~~~g~--------~~a~LE~~~~~-G~v~vNg~~~~k~~~~~L~~GDEv 221 (1223)
...|+|||-..||+.+-+|+||..||.|.+. +.|. ...++-+.|+- || |+|.+++.+.+-+.++-|+.+
T Consensus 176 ~~~~~fgr~~~cD~~~eHpsISr~h~vlQy~-~~~~~~p~~s~~~g~~i~dlgsThgt-~~NK~rvppk~yir~~Vg~v~ 253 (793)
T KOG1881|consen 176 AAACLFGRLGGCDVALEHPSISRFHAVLQYK-ASGPDDPCASNGEGWYIYDLGSTHGT-FLNKDRVPPKVYIRDRVGHVA 253 (793)
T ss_pred ceeEEecccCCCccccccCcccccceeeecc-CCCCCccccCCCCceEEeeccccccc-eeccccCCCcchhhhhHHHHH
Confidence 4789999999999999999999999998865 2332 24566666655 99 799999999999999999999
Q ss_pred EEccCCCeeEEeeecCcccC
Q 000921 222 VFSPSGKHSYIFQQLSDDTL 241 (1223)
Q Consensus 222 ~f~~~~~~ayifq~l~~~~~ 241 (1223)
-|+-+.+ .||||+.-.+..
T Consensus 254 ~fggsTr-l~i~Qgp~eD~E 272 (793)
T KOG1881|consen 254 RFGGSTR-LYIFQGPEEDEE 272 (793)
T ss_pred HhcCceE-EEEeeCCCcCCC
Confidence 9998887 999999776665
No 272
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.11 E-value=0.0013 Score=69.03 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=33.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccchh
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKV 1024 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~skI 1024 (1223)
+-|+|.||||+|||++|++|+..++.+|+.++...+...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~ 42 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEAL 42 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhc
Confidence 5689999999999999999999999888877666554443
No 273
>PRK15115 response regulator GlrR; Provisional
Probab=97.10 E-value=0.0062 Score=72.80 Aligned_cols=154 Identities=18% Similarity=0.293 Sum_probs=86.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch-hhh-cccccC-----------------CCC------h
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-VDS-MLGRRE-----------------NPG------E 1036 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk-IDs-I~g~R~-----------------s~~------e 1036 (1223)
..++|+|++|||||++|++|.... +.+|+.++|..+... ++. +++... .++ -
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i 237 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEcc
Confidence 469999999999999999999886 479999999876443 222 222100 000 0
Q ss_pred hHHHHHHHHHHHHHhccCC-----C--CCCccEEEEeecCCCCCCCHHHHc-ccC-------ceeeecCCCHHHHHH---
Q 000921 1037 HEAMRKMKNEFMVNWDGLR-----T--KDKERVLVLAATNRPFDLDEAVVR-RLP-------RRLMVNLPDAPNREK--- 1098 (1223)
Q Consensus 1037 ~e~~~rIl~~LL~~LDgl~-----~--k~~~rVLVIATTNrp~~LD~ALlR-RFd-------~~I~VplPd~eeR~~--- 1098 (1223)
+.........|+..|+.-. . ...-.+.||+||+.. +...+.+ +|. ..+.+.+|...+|.+
T Consensus 238 ~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~ 315 (444)
T PRK15115 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIP 315 (444)
T ss_pred ccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHcCCccHHHHHhhceeeecCCChHhccccHH
Confidence 1111123334444443211 0 011257888888853 4444333 331 235566777777732
Q ss_pred -HHHHHHhhccc--------CCcccHHHHHHHccCCcHHHHHHHHHHHHHH
Q 000921 1099 -IIRVILAKEEL--------ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1140 (1223)
Q Consensus 1099 -ILr~~L~k~~l--------~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~ 1140 (1223)
|++.++.+... -.+.-+..|....-.-+.++|+++++.|+..
T Consensus 316 ~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 316 LLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 44666554311 1222355555555444678888888887654
No 274
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.09 E-value=0.00074 Score=68.28 Aligned_cols=37 Identities=41% Similarity=0.708 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CceeEeeccccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSIT 1021 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg---~pfI~Vs~seL~ 1021 (1223)
..|||+|+|||||+++|++|....+ .+|+.+++..+.
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~ 61 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP 61 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc
Confidence 4699999999999999999999875 477777776644
No 275
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.08 E-value=0.001 Score=66.56 Aligned_cols=35 Identities=46% Similarity=0.767 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk 1023 (1223)
|++.||||+|||++|+.++..++ +..++...+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~ 36 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRR 36 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHH
Confidence 78999999999999999999999 444555554443
No 276
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0029 Score=70.16 Aligned_cols=148 Identities=21% Similarity=0.302 Sum_probs=108.8
Q ss_pred HHHHHHHHhhcccCCCCEEEEEcchhhhhc--------cChhHHHHHHHHhccCCC-----CEEEEEeccCCCcccccCC
Q 000921 689 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 755 (1223)
Q Consensus 689 ~i~~L~eVl~s~s~~~plIlyi~Dvek~l~--------~~~~~~~~~~~~l~~~~~-----~~~ii~s~~~~~~~~~~~~ 755 (1223)
.+.+||=+.-+ +.|-|+|+++++..=. |..|.-...-+.|+.|.| ++.||-+.+-.|.
T Consensus 228 mvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi------ 298 (404)
T KOG0728|consen 228 MVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI------ 298 (404)
T ss_pred HHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc------
Confidence 37888888877 8999999999987421 456666666667778877 8888888774332
Q ss_pred CCCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccch
Q 000921 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSN 835 (1223)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n 835 (1223)
||.+. +. .-|..-+||..+|+++.|++|++
T Consensus 299 ----------------ld~al---lr----------------pgridrkiefp~p~e~ar~~ilk--------------- 328 (404)
T KOG0728|consen 299 ----------------LDPAL---LR----------------PGRIDRKIEFPPPNEEARLDILK--------------- 328 (404)
T ss_pred ----------------ccHhh---cC----------------CCcccccccCCCCCHHHHHHHHH---------------
Confidence 22110 00 01234578899999999999999
Q ss_pred hhhHHHHhhhCCCCCCCccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHH
Q 000921 836 IISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1223)
Q Consensus 836 ~ih~~kml~~~~L~cddL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~l 907 (1223)
||.++|-- +---||..+|-+-..-+|+|+.++.--|--|++- ..+++++-++|+.+...+
T Consensus 329 -ihsrkmnl---~rgi~l~kiaekm~gasgaevk~vcteagm~alr--------errvhvtqedfemav~kv 388 (404)
T KOG0728|consen 329 -IHSRKMNL---TRGINLRKIAEKMPGASGAEVKGVCTEAGMYALR--------ERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred -Hhhhhhch---hcccCHHHHHHhCCCCccchhhhhhhhhhHHHHH--------HhhccccHHHHHHHHHHH
Confidence 88887622 2223788888888889999999999988888883 457899999999877654
No 277
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.06 E-value=0.00071 Score=79.34 Aligned_cols=75 Identities=29% Similarity=0.446 Sum_probs=63.9
Q ss_pred ecceeEEccCCccceeecCCCC--CccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCce-EEeeCCCEEEEccC
Q 000921 150 TGAVFTVGHNRQCDLYLKDPSI--SKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ-VVLRGGDELVFSPS 226 (1223)
Q Consensus 150 ~~~~~tvG~~~~cd~~l~d~~~--s~~~C~l~~~~~~g~~~a~LE~~~~~G~v~vNg~~~~k~~~-~~L~~GDEv~f~~~ 226 (1223)
....++|||+..||-.+.|+.- |.-||+|... +|. ++|=++|+||+ +|||..+.-|.- +.|+.||||-++
T Consensus 24 ~~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~--dg~--f~L~DtS~g~l-~VNgs~~~~g~~~~RLqqGd~i~iG-- 96 (430)
T COG3456 24 DRGGGVIGRSPDCDWQIDDPERFVSKQHCTISYR--DGG--FCLTDTSNGGL-LVNGSDLPLGEGSARLQQGDEILIG-- 96 (430)
T ss_pred hcCCcccccCCCCCccccCcccccchhheEEEec--CCe--EEEEecCCCce-eecccccCCCCCccccccCCEEeec--
Confidence 3467899999999999999875 9999999864 555 78999998888 799999999888 999999999773
Q ss_pred CCeeEEee
Q 000921 227 GKHSYIFQ 234 (1223)
Q Consensus 227 ~~~ayifq 234 (1223)
-|||.
T Consensus 97 ---~y~i~ 101 (430)
T COG3456 97 ---RYIIR 101 (430)
T ss_pred ---cEEEE
Confidence 37776
No 278
>PHA02624 large T antigen; Provisional
Probab=97.06 E-value=0.0012 Score=81.39 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=62.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch-------------hhhcccccCCC---ChhHHHHHHHHHH
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-------------VDSMLGRRENP---GEHEAMRKMKNEF 1047 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk-------------IDsI~g~R~s~---~e~e~~~rIl~~L 1047 (1223)
.+.+|||||||||||+++.+|++.++...+.|+++.-... +|..-+.-... .....+.+ +.-|
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~G~~~dN-l~~l 509 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELGCAIDQFMVVFEDVKGQPADNKDLPSGQGMNN-LDNL 509 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhhhhhhceEEEeeeccccccccccCCcccccch-hhHH
Confidence 3689999999999999999999999777788886541111 34332221100 00011111 1224
Q ss_pred HHHhccC-CC----CCCcc-----EEEEeecCCCCCCCHHHHcccCceeeecC
Q 000921 1048 MVNWDGL-RT----KDKER-----VLVLAATNRPFDLDEAVVRRLPRRLMVNL 1090 (1223)
Q Consensus 1048 L~~LDgl-~~----k~~~r-----VLVIATTNrp~~LD~ALlRRFd~~I~Vpl 1090 (1223)
-+.|||- +- +...+ --.|.|||. ..|+..+.-||...+.|..
T Consensus 510 Rn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 510 RDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred HhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 4455664 10 00001 124667776 5678888889999888864
No 279
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.04 E-value=0.0044 Score=75.89 Aligned_cols=167 Identities=19% Similarity=0.281 Sum_probs=97.0
Q ss_pred HHHHHHHhhcc-cCCCCEEEEEcchhhhhcc-----Chh----HHHHHHHHhccCC--CCEEEEEeccCCCcccccCCCC
Q 000921 690 INELFEVALNE-SKSSPLIVFVKDIEKSLTG-----NND----AYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPG 757 (1223)
Q Consensus 690 i~~L~eVl~s~-s~~~plIlyi~Dvek~l~~-----~~~----~~~~~~~~l~~~~--~~~~ii~s~~~~~~~~~~~~~~ 757 (1223)
+..+|+.+... +...|.||||+|++.++.. +.+ ..+.|-..|+.+. ++|+|||+.++.+
T Consensus 274 ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d--------- 344 (512)
T TIGR03689 274 IRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNRED--------- 344 (512)
T ss_pred HHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChh---------
Confidence 34455555432 3457999999999997652 112 2334444455544 5899999987421
Q ss_pred CceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHh--hCCCeEEEcCCchhhHHHHHHHHHHHHHHH---hhc
Q 000921 758 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVET---LKG 832 (1223)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~--rfe~~VeI~lPdeegrl~iwk~ql~~d~~~---l~~ 832 (1223)
.+ +.+|-+ ||..+|+|.+|+.++|.+||+..+...... +..
T Consensus 345 ---------------------~L-------------DpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~ 390 (512)
T TIGR03689 345 ---------------------MI-------------DPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAE 390 (512)
T ss_pred ---------------------hC-------------CHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHH
Confidence 11 126766 999999999999999999999765432111 000
Q ss_pred -----cchhhhHH-----HHhh----hCCCCCC----CccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCcee
Q 000921 833 -----QSNIISIR-----SVLS----RNGLDCV----DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLK 894 (1223)
Q Consensus 833 -----~~n~ih~~-----kml~----~~~L~cd----dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~ 894 (1223)
...+..+. .|.. +..++.. +. +.-..+..+||++|+.+|..|.-.++.+..... ...
T Consensus 391 ~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~-~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~----~~~ 465 (512)
T TIGR03689 391 FDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGST-EVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG----QVG 465 (512)
T ss_pred hcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCce-eeEeecccccHHHHHHHHHHHHHHHHHHHHhcC----CcC
Confidence 00111111 1111 1122211 22 233345678999999999999999887654211 123
Q ss_pred ecchhHHHHH
Q 000921 895 ISTESIMYGL 904 (1223)
Q Consensus 895 Is~esl~~~l 904 (1223)
|+.+++..++
T Consensus 466 ~~~~~l~~a~ 475 (512)
T TIGR03689 466 LRIEHLLAAV 475 (512)
T ss_pred cCHHHHHHHH
Confidence 5555555444
No 280
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.01 E-value=0.0011 Score=85.01 Aligned_cols=147 Identities=22% Similarity=0.280 Sum_probs=93.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch---------------hhhcccc---cCC-------------C
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK---------------VDSMLGR---REN-------------P 1034 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk---------------IDsI~g~---R~s-------------~ 1034 (1223)
.+|++||||.|||+.|.++|.++|+.++..++++..++ |...+.. +.. .
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 46999999999999999999999999999999876655 1111100 000 0
Q ss_pred ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhccc-CCcc
Q 000921 1035 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDV 1113 (1223)
Q Consensus 1035 ~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l-~~dv 1113 (1223)
+.....+..+.++-..... -.+-||+|+|.........+.|....|+|+.|+...+..-+..++....+ ..+-
T Consensus 439 ~~~~~dRg~v~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~ 512 (871)
T KOG1968|consen 439 GMFGEDRGGVSKLSSLCKK------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDD 512 (871)
T ss_pred cccchhhhhHHHHHHHHHh------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcH
Confidence 0000112222232222221 33567888888887776555555577999999998876666666655433 2344
Q ss_pred cHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 000921 1114 DLEGIANMADGYSGSDLKNLCVTAAHCPI 1142 (1223)
Q Consensus 1114 DL~~LA~~TeGySGaDL~~L~~~Aa~~ai 1142 (1223)
.++++.+.+ ++||++++..-.+..+
T Consensus 513 ~l~~~s~~~----~~DiR~~i~~lq~~~~ 537 (871)
T KOG1968|consen 513 VLEEISKLS----GGDIRQIIMQLQFWSL 537 (871)
T ss_pred HHHHHHHhc----ccCHHHHHHHHhhhhc
Confidence 466666666 7899998877665533
No 281
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.00 E-value=0.0022 Score=68.32 Aligned_cols=83 Identities=14% Similarity=0.252 Sum_probs=42.6
Q ss_pred HHHHHHHHHhccCCCCCCccEEEEeecCCC------CCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhc-cc-CCcc
Q 000921 1042 KMKNEFMVNWDGLRTKDKERVLVLAATNRP------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-EL-ASDV 1113 (1223)
Q Consensus 1042 rIl~~LL~~LDgl~~k~~~rVLVIATTNrp------~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~-~l-~~dv 1113 (1223)
.++..|...|+..... .++.+|.+++.. ..-...+..|+.. +.++.-+.++..++++..+... .+ .++.
T Consensus 139 ~~~~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~ 215 (234)
T PF01637_consen 139 DFLKSLRSLLDSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDE 215 (234)
T ss_dssp HHHHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HH
T ss_pred HHHHHHHHHHhhcccc--CCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHH
Confidence 4555566666653332 334444443321 1222345568866 9999999999999999987665 11 2567
Q ss_pred cHHHHHHHccCCcH
Q 000921 1114 DLEGIANMADGYSG 1127 (1223)
Q Consensus 1114 DL~~LA~~TeGySG 1127 (1223)
+++.+...|.|+-+
T Consensus 216 ~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 216 DIEEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHHHTT-HH
T ss_pred HHHHHHHHhCCCHH
Confidence 78889999988643
No 282
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.98 E-value=0.0076 Score=67.29 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=70.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hCCce---eEeecccccc------h-hhhcccccC---CCChhHHHHHHHHHH
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATE--AGANF---INISMSSITS------K-VDSMLGRRE---NPGEHEAMRKMKNEF 1047 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~e--lg~pf---I~Vs~seL~s------k-IDsI~g~R~---s~~e~e~~~rIl~~L 1047 (1223)
..+-|.|+|++|+|||+||+.+++. ..-.| +.++.+.-.. . +..+..... .....+.....+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 3467899999999999999999988 43322 2343332111 1 222222211 111111111122221
Q ss_pred HH---------------HhccC---CCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcc-
Q 000921 1048 MV---------------NWDGL---RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE- 1108 (1223)
Q Consensus 1048 L~---------------~LDgl---~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~- 1108 (1223)
|. .|+.+ ......+.-||.||....... .+. .-...+.++..+.++-.++|........
T Consensus 98 L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~-~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 175 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAG-SLG-GTDKVIELEPLSEEEALELFKKRAGRKES 175 (287)
T ss_dssp HCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGT-THH-SCEEEEECSS--HHHHHHHHHHHHTSHS-
T ss_pred hccccceeeeeeeccccccccccccccccccccccccccccccccc-ccc-ccccccccccccccccccccccccccccc
Confidence 10 11111 111122456677776643221 111 1146789999999999999999876543
Q ss_pred ---cCCcccHHHHHHHccCC
Q 000921 1109 ---LASDVDLEGIANMADGY 1125 (1223)
Q Consensus 1109 ---l~~dvDL~~LA~~TeGy 1125 (1223)
-..+.....|++.+.|+
T Consensus 176 ~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 176 ESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp ---TTSCTHHHHHHHHTTT-
T ss_pred cccccccccccccccccccc
Confidence 11122357889999874
No 283
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.97 E-value=0.011 Score=73.85 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=73.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CceeEeecc----cccchhh--hcc--ccc-CC--------------CChhHH
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS----SITSKVD--SML--GRR-EN--------------PGEHEA 1039 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg--~pfI~Vs~s----eL~skID--sI~--g~R-~s--------------~~e~e~ 1039 (1223)
.||||-|++||||++++++++.-+. .||+.+..+ .|++.+| .-+ |.. .. ..-...
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 6899999999999999999999874 588865443 2444433 100 000 00 011223
Q ss_pred HHHHHHHHHHHhcc---------CCCCCCccEEEEeecCCC---CCCCHHHHcccCceeeecCCCHHH
Q 000921 1040 MRKMKNEFMVNWDG---------LRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPN 1095 (1223)
Q Consensus 1040 ~~rIl~~LL~~LDg---------l~~k~~~rVLVIATTNrp---~~LD~ALlRRFd~~I~VplPd~ee 1095 (1223)
..+++..|+.-|+. ..-.-..++++|||-|.. ..|.++++.||+..|.++.|+..+
T Consensus 106 ~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 106 EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 35677788877753 222234568888874322 448899999999999999887654
No 284
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.93 E-value=0.0032 Score=64.96 Aligned_cols=32 Identities=38% Similarity=0.671 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEeecccc
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL 1020 (1223)
|+|.||+|+|||++|+.|+..++..++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999987765 44444
No 285
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.90 E-value=0.0034 Score=73.94 Aligned_cols=30 Identities=40% Similarity=0.630 Sum_probs=26.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 000921 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGA 1010 (1223)
Q Consensus 981 ~~PprGILL~GPPGTGKT~LAkAIA~elg~ 1010 (1223)
..+++|+.||||+|+|||+|.-.....+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 346799999999999999999999888754
No 286
>PF05729 NACHT: NACHT domain
Probab=96.89 E-value=0.0041 Score=62.94 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000921 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~el 1008 (1223)
-++|+|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999999887
No 287
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.89 E-value=0.0032 Score=72.54 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=31.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 981 ~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
..+...|.|.|+||||||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 345578999999999999999999999999999543
No 288
>PRK13948 shikimate kinase; Provisional
Probab=96.87 E-value=0.0018 Score=69.37 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 981 ~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
..++..|+|.|++|+|||++++.+|..++++|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456789999999999999999999999999998655
No 289
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.86 E-value=0.0041 Score=63.22 Aligned_cols=33 Identities=36% Similarity=0.647 Sum_probs=27.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
++|.|+||+|||++|+.++..+++.++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887765 444444
No 290
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.83 E-value=0.00099 Score=67.43 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
.|+|+|+||+|||++|+.||..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988544
No 291
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0018 Score=73.05 Aligned_cols=149 Identities=22% Similarity=0.310 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhhcccCCCCEEEEEcchhhhhc--------cChhHHHHHHHHhccCCC-----CEEEEEeccCCCccccc
Q 000921 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEK 753 (1223)
Q Consensus 687 k~~i~~L~eVl~s~s~~~plIlyi~Dvek~l~--------~~~~~~~~~~~~l~~~~~-----~~~ii~s~~~~~~~~~~ 753 (1223)
-.++..||.|..+ ..|-|+||++|+-.=. |..|.-..+-+.|+.|.| .|.||-+.+..+.
T Consensus 264 pklvRqlF~vA~e---~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~---- 336 (440)
T KOG0726|consen 264 PKLVRELFRVAEE---HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET---- 336 (440)
T ss_pred hHHHHHHHHHHHh---cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc----
Confidence 3458899999988 8999999999997422 556666556677777765 7888888875322
Q ss_pred CCCCCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhcc
Q 000921 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQ 833 (1223)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~ 833 (1223)
||.+.-- -+ |..-+||..+||+..+..||.
T Consensus 337 ------------------LDPaLiR-PG------------------rIDrKIef~~pDe~TkkkIf~------------- 366 (440)
T KOG0726|consen 337 ------------------LDPALIR-PG------------------RIDRKIEFPLPDEKTKKKIFQ------------- 366 (440)
T ss_pred ------------------cCHhhcC-CC------------------ccccccccCCCchhhhceeEE-------------
Confidence 2211000 01 234578999999999999999
Q ss_pred chhhhHHHHhhhCCCCCCCccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHH
Q 000921 834 SNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNI 906 (1223)
Q Consensus 834 ~n~ih~~kml~~~~L~cddL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~ 906 (1223)
||+.+|.-.+ ..+|+++......+|||+|..++--|--.++- ..++.++.++|..+...
T Consensus 367 ---IHTs~Mtl~~---dVnle~li~~kddlSGAdIkAictEaGllAlR--------erRm~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 367 ---IHTSRMTLAE---DVNLEELIMTKDDLSGADIKAICTEAGLLALR--------ERRMKVTMEDFKKAKEK 425 (440)
T ss_pred ---Eeecccchhc---cccHHHHhhcccccccccHHHHHHHHhHHHHH--------HHHhhccHHHHHHHHHH
Confidence 8887664333 23788888888899999999998777666663 22455677777665544
No 292
>PRK03839 putative kinase; Provisional
Probab=96.80 E-value=0.001 Score=69.88 Aligned_cols=30 Identities=33% Similarity=0.722 Sum_probs=27.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
|+|.|+||+|||++++.||+.++++|+.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 899999999999999999999999997654
No 293
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0028 Score=67.35 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=29.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
..|.|.|++|+|||++.+++|+.++++|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998643
No 294
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=96.78 E-value=0.0097 Score=73.58 Aligned_cols=147 Identities=22% Similarity=0.218 Sum_probs=84.3
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------ceeEe
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------NFINI 1015 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~--------------pfI~V 1015 (1223)
.|.|++++|.-|.-.+-- ....-|.++|-.+---+|||+|-||||||-|.+.+++-+-. ..+..
T Consensus 430 sIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 689999999998544322 22222333331222257999999999999999999987622 11111
Q ss_pred ecc---cc--------cch-----hhhcccccCCCChhHHHHHHHHHHHHH------hccCCCCCCccEEEEeecCCCC-
Q 000921 1016 SMS---SI--------TSK-----VDSMLGRRENPGEHEAMRKMKNEFMVN------WDGLRTKDKERVLVLAATNRPF- 1072 (1223)
Q Consensus 1016 s~s---eL--------~sk-----IDsI~g~R~s~~e~e~~~rIl~~LL~~------LDgl~~k~~~rVLVIATTNrp~- 1072 (1223)
... .+ ++. ||++-... +..+.++.+.|.+ .-|+-..-|.+.-|||++|...
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~s 581 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMS------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRS 581 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhh------HHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccc
Confidence 100 01 111 55442211 1223444444332 2233333467788999999332
Q ss_pred ------------CCCHHHHcccCceee-ecCCCHHHHHHHHHHHH
Q 000921 1073 ------------DLDEAVVRRLPRRLM-VNLPDAPNREKIIRVIL 1104 (1223)
Q Consensus 1073 ------------~LD~ALlRRFd~~I~-VplPd~eeR~~ILr~~L 1104 (1223)
.|++.|++|||.++- +..||+..=+.|-.++.
T Consensus 582 kynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 582 KYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred cCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 278999999987754 56777764455555544
No 295
>PRK06547 hypothetical protein; Provisional
Probab=96.77 E-value=0.0075 Score=64.00 Aligned_cols=32 Identities=34% Similarity=0.526 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
++.-|++.|++|+|||++|+.||..++.+++.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~ 45 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVH 45 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeec
Confidence 34678999999999999999999999888764
No 296
>PRK06762 hypothetical protein; Provisional
Probab=96.76 E-value=0.0048 Score=63.84 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
.-|+|.|+||+|||++|+.++..++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 5689999999999999999999997666666654444
No 297
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.72 E-value=0.026 Score=68.18 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL 1020 (1223)
+|.-|+|+|++|+|||+++..+|..+ |..+..+++...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 46789999999999999999999877 556666666543
No 298
>PRK08233 hypothetical protein; Provisional
Probab=96.72 E-value=0.01 Score=61.68 Aligned_cols=111 Identities=12% Similarity=0.130 Sum_probs=57.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CceeEeeccccc---chhhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAG-ANFINISMSSIT---SKVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1060 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg-~pfI~Vs~seL~---skIDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~ 1060 (1223)
.-|.+.|+||+|||++|+.||..++ ..++..+.-..- ..+......... -.......+ ...+..+....+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~l~~~~~~~~~ 78 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGAN-YSEWVLTPL----IKDIQELIAKSNV 78 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCC-hhhhhhHHH----HHHHHHHHcCCCc
Confidence 4577889999999999999999985 444433322110 011111111111 011112222 2233222211112
Q ss_pred cEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHH
Q 000921 1061 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1102 (1223)
Q Consensus 1061 rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~ 1102 (1223)
.++|+- ... ....+.+...++..|++..|......++++.
T Consensus 79 ~~vivd-~~~-~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R 118 (182)
T PRK08233 79 DYIIVD-YPF-AYLNSEMRQFIDVTIFIDTPLDIAMARRILR 118 (182)
T ss_pred eEEEEe-eeh-hhccHHHHHHcCEEEEEcCCHHHHHHHHHHH
Confidence 344432 222 2344556668999999999988766665544
No 299
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.016 Score=66.46 Aligned_cols=104 Identities=12% Similarity=0.119 Sum_probs=66.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc----------------eeEeecccc--cchhhhc---c---cccC--CC--
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAGAN----------------FINISMSSI--TSKVDSM---L---GRRE--NP-- 1034 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg~p----------------fI~Vs~seL--~skIDsI---~---g~R~--s~-- 1034 (1223)
-+.++||+||+|+||+.+|.++|..+-+. |+.+.+..- .-+||.+ . ..+. ..
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 45799999999999999999999987431 333322110 0113332 1 0111 10
Q ss_pred ----ChhH-HHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCC
Q 000921 1035 ----GEHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1091 (1223)
Q Consensus 1035 ----~e~e-~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplP 1091 (1223)
...+ ......|.||..|+.-+ .++++|..|+.++.|.+.+++|+ ..+.|+.+
T Consensus 98 v~ii~~ad~mt~~AaNaLLK~LEEPp----~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 98 IYIIHEADRMTLDAISAFLKVLEDPP----QHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred EEEEechhhcCHHHHHHHHHHhhcCC----CCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 1112 22356778888888733 56888888889999999999998 56667654
No 300
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.017 Score=71.69 Aligned_cols=144 Identities=20% Similarity=0.319 Sum_probs=106.8
Q ss_pred HHHHHHHhhcccCCCCEEEEEcchhhhhc---------cChhHHHHHHHHhccCCC-----CEEEEEeccCCCcccccCC
Q 000921 690 INELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 755 (1223)
Q Consensus 690 i~~L~eVl~s~s~~~plIlyi~Dvek~l~---------~~~~~~~~~~~~l~~~~~-----~~~ii~s~~~~~~~~~~~~ 755 (1223)
+..||+=... +.|-|+||+.++. ++ |+.+.-..|-..|-...| +|+||++.+.+|.
T Consensus 231 VRdLF~qAkk---~aP~IIFIDEiDA-vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdV------ 300 (596)
T COG0465 231 VRDLFEQAKK---NAPCIIFIDEIDA-VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDV------ 300 (596)
T ss_pred HHHHHHHhhc---cCCCeEEEehhhh-cccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCccc------
Confidence 5667766655 7899999999988 33 444444444444444443 7899999886443
Q ss_pred CCCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHH--hhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhcc
Q 000921 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQIS--RLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQ 833 (1223)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~--~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~ 833 (1223)
||- +|. -||--+|.|.+||-.+|.+|++
T Consensus 301 ----------------lD~---------------------ALlRpgRFDRqI~V~~PDi~gRe~Ilk------------- 330 (596)
T COG0465 301 ----------------LDP---------------------ALLRPGRFDRQILVELPDIKGREQILK------------- 330 (596)
T ss_pred ----------------chH---------------------hhcCCCCcceeeecCCcchhhHHHHHH-------------
Confidence 111 121 3678899999999999999999
Q ss_pred chhhhHHHHhhhCCCCCC-CccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHHh
Q 000921 834 SNIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 908 (1223)
Q Consensus 834 ~n~ih~~kml~~~~L~cd-dL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~lq 908 (1223)
.|++ +-.+..+ ||..+|..|..|+|++++.++..|.-+++.+ ++..|++.++..+.+.+-
T Consensus 331 ---vH~~----~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~--------n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 331 ---VHAK----NKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR--------NKKEITMRDIEEAIDRVI 391 (596)
T ss_pred ---HHhh----cCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh--------cCeeEeccchHHHHHHHh
Confidence 7775 3455555 8888999999999999999999998888853 356688889988887763
No 301
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.66 E-value=0.002 Score=63.35 Aligned_cols=37 Identities=32% Similarity=0.561 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCceeEeeccccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSIT 1021 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el--------g~pfI~Vs~seL~ 1021 (1223)
+.++++||||+|||++++.++.+. ..+++.+.+....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 578999999999999999999998 7888888776544
No 302
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.65 E-value=0.0026 Score=64.51 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=39.3
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
.|.|+.-+.+.+...|...+..+ . ...|.-+-||||||||||.+++-||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~-p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------N-PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------C-CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 56788888888887777655332 1 2234567799999999999999999985
No 303
>PHA00729 NTP-binding motif containing protein
Probab=96.65 E-value=0.0049 Score=68.25 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=25.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcee
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI 1013 (1223)
..|+|+|+||||||+||.+||..++..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~ 46 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLN 46 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcc
Confidence 47999999999999999999999874443
No 304
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.64 E-value=0.0055 Score=64.70 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeec
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~ 1017 (1223)
..|+|.||+|+|||++++.||..++++|+..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 569999999999999999999999999887654
No 305
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.052 Score=62.41 Aligned_cols=111 Identities=10% Similarity=0.075 Sum_probs=67.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------eeEeecccccchhhhcc------ccc
Q 000921 982 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKVDSML------GRR 1031 (1223)
Q Consensus 982 ~PprGILL~GPPGTGKT~LAkAIA~elg~p------------------------fI~Vs~seL~skIDsI~------g~R 1031 (1223)
+.+.++||+|| +||+.+|+++|..+-+. |+.+.+..-.-+||.|- ...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34579999996 68999999999876321 22222211111133321 111
Q ss_pred C--CC------ChhH-HHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHH
Q 000921 1032 E--NP------GEHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 1100 (1223)
Q Consensus 1032 ~--s~------~e~e-~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~IL 1100 (1223)
. +. .+.+ .....-|.||..|+.-+ .++++|.+|+.++.|-|.+++|+ ..|.|+. +.++-.+++
T Consensus 100 p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp----~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ----SEIYIFLLTNDENKVLPTIKSRT-QIFHFPK-NEAYLIQLL 171 (290)
T ss_pred cccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC----CCeEEEEEECChhhCchHHHHcc-eeeeCCC-cHHHHHHHH
Confidence 0 00 0112 22356778888888733 45788888888999999999999 6788865 444433443
No 306
>PRK04040 adenylate kinase; Provisional
Probab=96.62 E-value=0.018 Score=62.01 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=29.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCceeEeeccccc
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSIT 1021 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el--g~pfI~Vs~seL~ 1021 (1223)
++-|+++|+||||||++++.++..+ ++.++ +..+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~--~~g~~~ 39 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV--NFGDVM 39 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE--ecchHH
Confidence 3578999999999999999999999 66654 445543
No 307
>PRK00625 shikimate kinase; Provisional
Probab=96.61 E-value=0.0018 Score=68.69 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
.|+|.|+||+|||++++.+|..++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998765
No 308
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.60 E-value=0.0018 Score=67.90 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=27.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
|+++||||+|||++|+.||..+|++. +++.+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHH
Confidence 78999999999999999999998654 5555544
No 309
>PRK14532 adenylate kinase; Provisional
Probab=96.59 E-value=0.0018 Score=68.48 Aligned_cols=29 Identities=38% Similarity=0.701 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
.|+|.||||+|||++|+.||..+|++++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 48999999999999999999999877654
No 310
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.025 Score=65.21 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=73.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-------------ceeEee--cccccchhhhc------ccccC---CC-----
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINIS--MSSITSKVDSM------LGRRE---NP----- 1034 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~elg~-------------pfI~Vs--~seL~skIDsI------~g~R~---s~----- 1034 (1223)
...+||+|+.|.||+.+|+++|+.+-+ .++.++ ...+. +|.+ +.... +.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~--vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLS--KSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCC--HHHHHHHHHHhccCCcccCCceEEE
Confidence 468999999999999999999998711 233444 22211 2322 11111 00
Q ss_pred --ChhHHHHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCCCHHHHHHHHHH
Q 000921 1035 --GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1102 (1223)
Q Consensus 1035 --~e~e~~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~ 1102 (1223)
..+.......+.||..|+..+ ..+++|.+|+.+..|-+.+++|+ ..++|..|+.++-.+.|..
T Consensus 96 I~~~e~m~~~a~NaLLK~LEEPp----~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 96 IKNIEKTSNSLLNALLKTIEEPP----KDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred EecccccCHHHHHHHHHHhhCCC----CCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHHHHHHH
Confidence 011122346678888888843 44566666668899999999998 7799999988877666553
No 311
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=96.56 E-value=0.0011 Score=77.03 Aligned_cols=146 Identities=25% Similarity=0.312 Sum_probs=73.1
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccc-----ccch-
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-----ITSK- 1023 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~se-----L~sk- 1023 (1223)
+|.|.+.+|..|.-.+....... ...++..+-..+|||.|.||||||.|.+.++.-+...+ .+++.. |+..
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~--~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKN--DPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCC--CCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhccccc--cccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 67898888877733222111110 00001112235799999999999999998875543322 222211 1100
Q ss_pred -------------------------hhhcccccCCCChhHHHHHHHHHHHHHhccC---------CCCCCccEEEEeecC
Q 000921 1024 -------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGL---------RTKDKERVLVLAATN 1069 (1223)
Q Consensus 1024 -------------------------IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl---------~~k~~~rVLVIATTN 1069 (1223)
||.+-.... .....|+..|+.. ...-+-+.-|+||+|
T Consensus 102 ~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~---------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~N 172 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE---------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAAN 172 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C---------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE-
T ss_pred ccccccceeEEeCCchhcccCceeeecccccccc---------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHh
Confidence 444422111 1234445555432 111245678999998
Q ss_pred CCC-------------CCCHHHHcccCceeee-cCCCHHHHHHHHHHHHhhc
Q 000921 1070 RPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1107 (1223)
Q Consensus 1070 rp~-------------~LD~ALlRRFd~~I~V-plPd~eeR~~ILr~~L~k~ 1107 (1223)
... .+++.+++|||..+.+ ..|+.+.-..|.++++...
T Consensus 173 P~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 173 PKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp -TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 665 4788999999988765 6778777777888777553
No 312
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0095 Score=66.55 Aligned_cols=150 Identities=21% Similarity=0.287 Sum_probs=106.1
Q ss_pred HHHHHHHHhhcccCCCCEEEEEcchhhhhc--------cChhHHHHHHHHhccCCC-----CEEEEEeccCCCcccccCC
Q 000921 689 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 755 (1223)
Q Consensus 689 ~i~~L~eVl~s~s~~~plIlyi~Dvek~l~--------~~~~~~~~~~~~l~~~~~-----~~~ii~s~~~~~~~~~~~~ 755 (1223)
++..-|....+ ..|-|+||.+++-.=. |..|.-...-+.|+.|.| .|.||.+.+-.|.
T Consensus 252 LVRDAFaLAKE---kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi------ 322 (424)
T KOG0652|consen 252 LVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI------ 322 (424)
T ss_pred HHHHHHHHhhc---cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc------
Confidence 34445566665 8999999999876421 556666555566666665 7999998885332
Q ss_pred CCCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccch
Q 000921 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSN 835 (1223)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n 835 (1223)
||. .++ =+-|+.-+||..+|.+++|.+|+.
T Consensus 323 ----------------LDP-----------------ALl--RSGRLDRKIEfP~Pne~aRarIlQ--------------- 352 (424)
T KOG0652|consen 323 ----------------LDP-----------------ALL--RSGRLDRKIEFPHPNEEARARILQ--------------- 352 (424)
T ss_pred ----------------cCH-----------------HHh--hcccccccccCCCCChHHHHHHHH---------------
Confidence 221 111 123667889999999999999999
Q ss_pred hhhHHHHhhhCCCCCCCccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHHHhh
Q 000921 836 IISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1223)
Q Consensus 836 ~ih~~kml~~~~L~cddL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~lq~ 909 (1223)
||.+||-.+. ..+.++||..|..|.|+....+.--|--.++- .+.-.|+.++|..++..++.
T Consensus 353 -IHsRKMnv~~---DvNfeELaRsTddFNGAQcKAVcVEAGMiALR--------r~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 353 -IHSRKMNVSD---DVNFEELARSTDDFNGAQCKAVCVEAGMIALR--------RGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred -HhhhhcCCCC---CCCHHHHhhcccccCchhheeeehhhhHHHHh--------cccccccHHHHHHHHHHHHH
Confidence 9999886544 23889999999999999887765555444552 23345788999888877764
No 313
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=96.51 E-value=0.027 Score=67.10 Aligned_cols=39 Identities=21% Similarity=0.529 Sum_probs=33.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 1023 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk 1023 (1223)
..++++|.+||||+++|+++.... +.||+.++|..+...
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~ 204 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES 204 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHH
Confidence 679999999999999999998765 579999999876543
No 314
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.50 E-value=0.0022 Score=67.47 Aligned_cols=28 Identities=46% Similarity=0.786 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
|+|.||||+|||++|+.||..+|++++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7999999999999999999999877654
No 315
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.49 E-value=0.0023 Score=64.02 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
|.+.|+||||||++|+.||..++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998765
No 316
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.42 E-value=0.0068 Score=65.14 Aligned_cols=121 Identities=15% Similarity=0.232 Sum_probs=64.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh-CCceeEeecccccch---hhhcccccCCC---ChhHHHHHHHHHHHHHhccC
Q 000921 982 KPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSK---VDSMLGRRENP---GEHEAMRKMKNEFMVNWDGL 1054 (1223)
Q Consensus 982 ~PprGILL~GPPGTGKT~LAkAIA~el-g~pfI~Vs~seL~sk---IDsI~g~R~s~---~e~e~~~rIl~~LL~~LDgl 1054 (1223)
..|.-+++.|+||+|||+++..+..++ +-.++.|+..++... .+.+....... ..+.....+...++...-.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~- 91 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIE- 91 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-
Confidence 345889999999999999999999998 888999999887766 23333221110 1122233344444433222
Q ss_pred CCCCCccEEEEeecCCCCCCCH---HHHc-ccC-ceeeecCCCHHHHHHHHHHHHhh
Q 000921 1055 RTKDKERVLVLAATNRPFDLDE---AVVR-RLP-RRLMVNLPDAPNREKIIRVILAK 1106 (1223)
Q Consensus 1055 ~~k~~~rVLVIATTNrp~~LD~---ALlR-RFd-~~I~VplPd~eeR~~ILr~~L~k 1106 (1223)
.+..+++=+|-..++.+.. .+.. -|. ..+.+..|....+..+...+...
T Consensus 92 ---~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~ 145 (199)
T PF06414_consen 92 ---NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEG 145 (199)
T ss_dssp ---CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHH
T ss_pred ---cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHcc
Confidence 2234555455555555443 2222 222 33456677777778888877765
No 317
>PRK14531 adenylate kinase; Provisional
Probab=96.40 E-value=0.0028 Score=67.17 Aligned_cols=30 Identities=30% Similarity=0.662 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
.-|+++||||+|||++++.||..+|++++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 359999999999999999999999987654
No 318
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.40 E-value=0.0027 Score=65.77 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=35.9
Q ss_pred ccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---eeEeecccc
Q 000921 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 1020 (1223)
Q Consensus 951 IgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p---fI~Vs~seL 1020 (1223)
+.|-++..+.|..++.. . . ...++.++|+|++|+|||+|+++++..+..+ ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~~-~-------~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A-------Q---SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T-------S---S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H-------H---cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 45677777777776631 1 1 2234789999999999999999998887444 666655444
No 319
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.021 Score=65.81 Aligned_cols=74 Identities=31% Similarity=0.387 Sum_probs=56.9
Q ss_pred ccCCCccccccccccccchhhhHHHHHhhhhhhhcccccccccCCCCCCCCceeccCCCChhHHHHHHHHHHHhhccCc
Q 000921 443 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1223)
Q Consensus 443 i~~~~~~~vsfd~FPYylse~Tk~~L~~~~~vHLk~~~~~ky~~~L~~~s~rILLsgpagsEiYqe~LaKALA~~f~ak 521 (1223)
++|+.+..==||+-=| .-+-|+-|++-|.+-|+-.++ +-..+|=+-+|=|||.|||||- .-.|.||||+++.+|
T Consensus 131 ~LPa~eF~glWEsLiy--ds~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPGTG--KTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIY--DSNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPGTG--KTSLCKALAQKLSIR 204 (423)
T ss_pred eccchhhhhhHHHHhh--cccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCCCC--hhHHHHHHHHhheee
Confidence 5566666666777533 345677777777777776665 5668999999999999999964 568999999999888
No 320
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.34 E-value=0.055 Score=72.79 Aligned_cols=54 Identities=22% Similarity=0.437 Sum_probs=42.1
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p 1011 (1223)
..++++.|++...++|..++.. + ....+-|-++||+|+|||+||++++..+...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l-----------~-~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL-----------E-SEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc-----------c-cCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 3567899999999999887643 1 1123678899999999999999999887544
No 321
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.011 Score=74.50 Aligned_cols=150 Identities=28% Similarity=0.286 Sum_probs=84.2
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcee-Eeeccccc-------
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-NISMSSIT------- 1021 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI-~Vs~seL~------- 1021 (1223)
.|.|.+.+|+.|.-.+.... ......+...+---+|||.|-|||||+.|.+.+++-+-..++ ...+++-.
T Consensus 287 sIyG~e~VKkAilLqLfgGv--~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGV--KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCCC--cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 68999999999865443211 111111110111146999999999999999999987733322 22111110
Q ss_pred ------------------ch----hhhcccccCCCChhHHHHHHHHHHHHH----h--ccCCCCCCccEEEEeecCCCC-
Q 000921 1022 ------------------SK----VDSMLGRRENPGEHEAMRKMKNEFMVN----W--DGLRTKDKERVLVLAATNRPF- 1072 (1223)
Q Consensus 1022 ------------------sk----IDsI~g~R~s~~e~e~~~rIl~~LL~~----L--Dgl~~k~~~rVLVIATTNrp~- 1072 (1223)
+. ||.+-..... .+..+.+.|.+ + -|+...-+.+.-|+||+|..+
T Consensus 365 rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~------dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~G 438 (682)
T COG1241 365 RDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE------DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFG 438 (682)
T ss_pred EccCCCeEEEeCCEEEEecCCEEEEEeccCCChH------HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCC
Confidence 01 4544322211 11122222211 1 122222346778999999766
Q ss_pred ------------CCCHHHHcccCceeeec-CCCHHHHHHHHHHHHhhc
Q 000921 1073 ------------DLDEAVVRRLPRRLMVN-LPDAPNREKIIRVILAKE 1107 (1223)
Q Consensus 1073 ------------~LD~ALlRRFd~~I~Vp-lPd~eeR~~ILr~~L~k~ 1107 (1223)
.|++.|++|||..+.+. .|+.+.=..|.++++...
T Consensus 439 ryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 439 RYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred cCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 37889999999887764 577765566666665443
No 322
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.013 Score=69.85 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
+.-|+|+||+|+|||+.+..+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999765
No 323
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.0031 Score=65.49 Aligned_cols=31 Identities=48% Similarity=0.833 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
.||+.|-||||||+++..||...++++|.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 7999999999999999999999999998764
No 324
>PRK14530 adenylate kinase; Provisional
Probab=96.20 E-value=0.0041 Score=67.52 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEe
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~V 1015 (1223)
.|+|.||||+|||++|+.||..++++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999999887743
No 325
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.03 Score=63.33 Aligned_cols=105 Identities=14% Similarity=0.080 Sum_probs=67.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------eeEeeccc--c-cchhhhc----cccc-
Q 000921 982 KPCKGILLFGPPGTGKTMLAKAVATEAGAN----------------------FINISMSS--I-TSKVDSM----LGRR- 1031 (1223)
Q Consensus 982 ~PprGILL~GPPGTGKT~LAkAIA~elg~p----------------------fI~Vs~se--L-~skIDsI----~g~R- 1031 (1223)
.++.++||+||.|+||..+|.++|..+-+. |+.+.... + .+.+..+ ....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 456899999999999999999999887221 22221111 0 0112222 1111
Q ss_pred CCCC-------hhHH-HHHHHHHHHHHhccCCCCCCccEEEEeecCCCCCCCHHHHcccCceeeecCC
Q 000921 1032 ENPG-------EHEA-MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1091 (1223)
Q Consensus 1032 ~s~~-------e~e~-~~rIl~~LL~~LDgl~~k~~~rVLVIATTNrp~~LD~ALlRRFd~~I~VplP 1091 (1223)
..++ ..+. .....|.||..++.-+ .++++|.+|+.++.|-+.+++|+ ..+.|+.+
T Consensus 85 e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp----~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQSANSLLKLIEEPP----KNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhCHHHHHHHHHhhcCCC----CCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 1111 1222 2357788898888732 56888999999999999999998 44667666
No 326
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.18 E-value=0.024 Score=66.90 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=46.2
Q ss_pred HHHHHHHHHhccCCCCCCccEEEEeecCC-CCCCCHHHHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHH
Q 000921 1042 KMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIAN 1120 (1223)
Q Consensus 1042 rIl~~LL~~LDgl~~k~~~rVLVIATTNr-p~~LD~ALlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~ 1120 (1223)
-+++.|+..|-. ..|+++||+|| |++|-..- ..+...+| -..+|+..+.-..+...+|+...+.
T Consensus 211 miL~rLf~~Lf~------~GvVlvATSNR~P~dLYknG---lQR~~F~P------fI~~L~~rc~vi~ldS~vDYR~~~~ 275 (467)
T KOG2383|consen 211 MILKRLFEHLFK------NGVVLVATSNRAPEDLYKNG---LQRENFIP------FIALLEERCKVIQLDSGVDYRRKAK 275 (467)
T ss_pred HHHHHHHHHHHh------CCeEEEEeCCCChHHHhhcc---hhhhhhhh------HHHHHHHhheEEecCCccchhhccC
Confidence 445555544422 57899999998 44443322 22333344 4667888888788888899983333
Q ss_pred Hcc-C--CcHH-HHHHHHHH
Q 000921 1121 MAD-G--YSGS-DLKNLCVT 1136 (1223)
Q Consensus 1121 ~Te-G--ySGa-DL~~L~~~ 1136 (1223)
-.+ + |.+. |...++.+
T Consensus 276 ~~~~~~yf~~~~d~~~~l~~ 295 (467)
T KOG2383|consen 276 SAGENYYFISETDVETVLKE 295 (467)
T ss_pred CCCceeEecChhhHHHHHHH
Confidence 222 2 3444 66655543
No 327
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.16 E-value=0.045 Score=72.70 Aligned_cols=116 Identities=27% Similarity=0.296 Sum_probs=72.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccchhhhccccc---CCC---------------C-------hhHH
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRR---ENP---------------G-------EHEA 1039 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~skIDsI~g~R---~s~---------------~-------e~e~ 1039 (1223)
+++||.|-||+|||.|..|+|++.|-.+++|+.++-.+-+|-+...- ..+ | -.-+
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 67999999999999999999999999999999998666655432110 000 0 0112
Q ss_pred HHHHHHHHHHHhccCCC----------CCCccEEEEeecCCC------CCCCHHHHcccCceeeecCCCHHHHHHHHH
Q 000921 1040 MRKMKNEFMVNWDGLRT----------KDKERVLVLAATNRP------FDLDEAVVRRLPRRLMVNLPDAPNREKIIR 1101 (1223)
Q Consensus 1040 ~~rIl~~LL~~LDgl~~----------k~~~rVLVIATTNrp------~~LD~ALlRRFd~~I~VplPd~eeR~~ILr 1101 (1223)
.+.++.-|-..+|--.. +-..+..|+||-|.- ..|+..++.|| .+|++...+.+....|..
T Consensus 1624 SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~dDi~~Ia~ 1700 (4600)
T COG5271 1624 SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTTDDITHIAN 1700 (4600)
T ss_pred HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecccccchHHHHHH
Confidence 23344444444442110 012456788887754 34999999999 456665444444444433
No 328
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.16 E-value=0.0051 Score=63.98 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
..|+|.|++|+|||++++.||..+|++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 45899999999999999999999999998643
No 329
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.15 E-value=0.0062 Score=67.22 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 000921 984 CKGILLFGPPGTGKTMLAKAVAT 1006 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~ 1006 (1223)
+.-+||||+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 45699999999999999999984
No 330
>PRK13808 adenylate kinase; Provisional
Probab=96.14 E-value=0.016 Score=67.52 Aligned_cols=33 Identities=30% Similarity=0.599 Sum_probs=27.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
|+|+||||+|||++++.||..++++++ +..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQL--STGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--cccHHH
Confidence 899999999999999999999987555 444444
No 331
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.13 E-value=0.0079 Score=63.14 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=34.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccchhh
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKVD 1025 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~skID 1025 (1223)
..|.|.|.||+|||+||++|...+ |.+.+.+++..+...+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~ 46 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN 46 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC
Confidence 568899999999999999999887 78899999988776643
No 332
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.09 E-value=0.015 Score=65.94 Aligned_cols=36 Identities=31% Similarity=0.508 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
.-|+|.||||||||++|+.|+..+. +++.++...+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r 38 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLR 38 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHH
Confidence 4588999999999999999999983 33444544443
No 333
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.09 E-value=0.025 Score=62.24 Aligned_cols=38 Identities=39% Similarity=0.547 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk 1023 (1223)
-+||+||+|||||.+|-++|+..|.|+|..+.-.....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence 47899999999999999999999999999887665544
No 334
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.09 E-value=0.005 Score=68.28 Aligned_cols=31 Identities=35% Similarity=0.667 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEe
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~V 1015 (1223)
.-|+|.||||+|||++|+.||..+|++++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 3499999999999999999999999877653
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.08 E-value=0.0054 Score=64.18 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
.-|++.||||+|||++|+.||..+|+..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 368899999999999999999999876553
No 336
>PRK13946 shikimate kinase; Provisional
Probab=96.07 E-value=0.0051 Score=65.35 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
+.|+|.|+||||||++++.||..+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999998755
No 337
>PRK02496 adk adenylate kinase; Provisional
Probab=96.04 E-value=0.0052 Score=64.82 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
-+++.||||+|||++|+.||..++++.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 38999999999999999999999887664
No 338
>PRK14528 adenylate kinase; Provisional
Probab=96.00 E-value=0.0062 Score=65.01 Aligned_cols=30 Identities=37% Similarity=0.630 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
+.|++.||||+|||++|+.||..++++++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 358999999999999999999999988764
No 339
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.00 E-value=0.024 Score=58.40 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=29.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
++|.|+||+|||++|+.|+..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999998 66667666555443
No 340
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.99 E-value=0.0057 Score=66.20 Aligned_cols=28 Identities=43% Similarity=0.782 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
|+++||||+|||++|+.||..+|++.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999877664
No 341
>PHA02774 E1; Provisional
Probab=95.98 E-value=0.045 Score=67.72 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeE-eec
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISM 1017 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~-Vs~ 1017 (1223)
+.++||||||||||++|-+|++.++...+. ++.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 689999999999999999999998655443 444
No 342
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.96 E-value=0.0063 Score=66.10 Aligned_cols=28 Identities=43% Similarity=0.768 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
|+++||||+|||++|+.||..++++.+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 8999999999999999999999876665
No 343
>PLN02200 adenylate kinase family protein
Probab=95.94 E-value=0.0078 Score=66.83 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~s 1022 (1223)
.+.-|++.||||+|||++|+.||..+|++ .+++.+++.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 44678999999999999999999999865 466666654
No 344
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.92 E-value=0.02 Score=60.03 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg 1009 (1223)
++.-|+|.|+||+|||++|++|+..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999985
No 345
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.89 E-value=0.018 Score=61.55 Aligned_cols=99 Identities=20% Similarity=0.310 Sum_probs=62.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccchhhh-cccccCCCChhHHHHHHHHHHHHHhccCCCCCC
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKVDS-MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1059 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~skIDs-I~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~ 1059 (1223)
+..|.|.|.+|+|||++|.+++..+ |...+.+++..+...+-. +.-.+.+ -.+..+++ .++-.+|- .
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~ed--R~eniRRv-aevAkll~------d 93 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSRED--RIENIRRV-AEVAKLLA------D 93 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHH--HHHHHHHH-HHHHHHHH------H
Confidence 4678899999999999999999987 889999999887765332 2111111 11122222 23333332 2
Q ss_pred ccEEEEeecCCCCCCCHHHHc------ccCceeeecCCC
Q 000921 1060 ERVLVLAATNRPFDLDEAVVR------RLPRRLMVNLPD 1092 (1223)
Q Consensus 1060 ~rVLVIATTNrp~~LD~ALlR------RFd~~I~VplPd 1092 (1223)
..++||.+.=.|..-+-.+.| +| .+|+|..|=
T Consensus 94 aG~iviva~ISP~r~~R~~aR~~~~~~~F-iEVyV~~pl 131 (197)
T COG0529 94 AGLIVIVAFISPYREDRQMARELLGEGEF-IEVYVDTPL 131 (197)
T ss_pred CCeEEEEEeeCccHHHHHHHHHHhCcCce-EEEEeCCCH
Confidence 467888888777765554444 35 567777663
No 346
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=0.027 Score=65.07 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=32.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccc
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL 1020 (1223)
+.-++|.||.++|||.||-+||+.++.++|.++.-.+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 3679999999999999999999999999998876543
No 347
>PRK14527 adenylate kinase; Provisional
Probab=95.87 E-value=0.0075 Score=64.26 Aligned_cols=31 Identities=35% Similarity=0.642 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
+.-|+++||||+|||++|+.||..+++..+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4679999999999999999999999876553
No 348
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.049 Score=57.59 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
..-|++.|+||+|||+++..||..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3578999999999999999999887
No 349
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.83 E-value=0.09 Score=56.74 Aligned_cols=37 Identities=30% Similarity=0.313 Sum_probs=28.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC-CceeEeecccc
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEAG-ANFINISMSSI 1020 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~elg-~pfI~Vs~seL 1020 (1223)
+.-|.|.||+|+|||+|+++|+..++ ..+..++...+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 46789999999999999999999984 33444555443
No 350
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.033 Score=66.08 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
...++|.||+|+|||+++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999864
No 351
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.0078 Score=63.41 Aligned_cols=28 Identities=36% Similarity=0.676 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
|-+.||||||||++|+.||..+|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999975
No 352
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.77 E-value=0.011 Score=59.21 Aligned_cols=32 Identities=41% Similarity=0.771 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCceeEeecc
Q 000921 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~s 1018 (1223)
++|+||||+|||+++..++..+ +.+++.++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6899999999999999999887 4566665553
No 353
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.72 E-value=0.0073 Score=61.79 Aligned_cols=32 Identities=38% Similarity=0.658 Sum_probs=25.8
Q ss_pred EEcCCCChHHHHHHHHHHHhCCceeEeecccccc
Q 000921 989 LFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 989 L~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~s 1022 (1223)
|.||||+|||++|+.||..+|+. .|+..+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHH
Confidence 68999999999999999999765 455555543
No 354
>PRK07667 uridine kinase; Provisional
Probab=95.69 E-value=0.076 Score=57.04 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~ 1021 (1223)
.-|.+.|+||+|||++|+.|+..+ |.++..++..++.
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYI 57 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCccc
Confidence 457799999999999999999987 4566666666644
No 355
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.65 E-value=0.0085 Score=58.24 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 000921 987 ILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~el 1008 (1223)
|+|.|+||+|||++|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 356
>PRK04182 cytidylate kinase; Provisional
Probab=95.64 E-value=0.01 Score=61.55 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
-|+|.|++|+|||++|+.||..+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999999875
No 357
>PRK10867 signal recognition particle protein; Provisional
Probab=95.63 E-value=0.18 Score=61.04 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCceeEeecccc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSI 1020 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~el----g~pfI~Vs~seL 1020 (1223)
++.-|+|.||+|+|||+++..+|..+ |..+..|++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 46789999999999999888888755 566667766543
No 358
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.63 E-value=0.077 Score=56.52 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=28.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC---CceeEeeccccc
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSIT 1021 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg---~pfI~Vs~seL~ 1021 (1223)
|.+.|+||+|||+||+.|+..++ .+...++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 67899999999999999999973 566666665554
No 359
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.62 E-value=0.15 Score=61.64 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~se 1019 (1223)
++.-|+|.||+|+|||+++..||..+ |..+..|++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 45788999999999999999999877 66666666643
No 360
>PLN02199 shikimate kinase
Probab=95.62 E-value=0.042 Score=63.20 Aligned_cols=101 Identities=13% Similarity=0.202 Sum_probs=57.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceeEeec--ccc-cch-hhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCC
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISM--SSI-TSK-VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1059 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~--seL-~sk-IDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~ 1059 (1223)
.+.|+|.|.+|+|||++++.+|..+|++|+..+. ... .+. |..|+...+. ..++..-.+.|..+...
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE----~~FR~~E~e~L~~L~~~----- 172 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGE----NFFRGKETDALKKLSSR----- 172 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCH----HHHHHHHHHHHHHHHhc-----
Confidence 3689999999999999999999999999987543 111 111 4444433221 23344444555544322
Q ss_pred ccEEEEeecCCCCCCCHHHHc--ccCceeeecCCCHHH
Q 000921 1060 ERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 1095 (1223)
Q Consensus 1060 ~rVLVIATTNrp~~LD~ALlR--RFd~~I~VplPd~ee 1095 (1223)
.+ +||+|--- -.+.+..+. +-...|++..|-..-
T Consensus 173 ~~-~VIStGGG-~V~~~~n~~~L~~G~vV~Ldas~E~l 208 (303)
T PLN02199 173 YQ-VVVSTGGG-AVIRPINWKYMHKGISIWLDVPLEAL 208 (303)
T ss_pred CC-EEEECCCc-ccCCHHHHHHHhCCeEEEEECCHHHH
Confidence 12 45554432 244443332 225677777764433
No 361
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.029 Score=72.91 Aligned_cols=352 Identities=16% Similarity=0.188 Sum_probs=179.5
Q ss_pred HHHHHHhhcccCCCCEEEEEcchhhh-------hc-cChhHHHHHHHHhccCC--CCEEEEEeccCCCcccccCCCCCce
Q 000921 691 NELFEVALNESKSSPLIVFVKDIEKS-------LT-GNNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLL 760 (1223)
Q Consensus 691 ~~L~eVl~s~s~~~plIlyi~Dvek~-------l~-~~~~~~~~~~~~l~~~~--~~~~ii~s~~~~~~~~~~~~~~~~~ 760 (1223)
.-|||... +++|.|+||..|.=+ .. -+.-.+..|=..++-++ |+|++||+.+..|
T Consensus 353 rllFeeA~---k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd------------ 417 (1080)
T KOG0732|consen 353 RLLFEEAQ---KTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD------------ 417 (1080)
T ss_pred HHHHHHHh---ccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc------------
Confidence 33455443 389999999999821 11 12334444555555554 4999999998533
Q ss_pred eeccCcchhhhccccCCCCcccccccccccHHHHHHH--HhhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccchhhh
Q 000921 761 FTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQI--SRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIIS 838 (1223)
Q Consensus 761 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l--~~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ih 838 (1223)
+++. +| --||---...+||+-+.|.+|+. ||
T Consensus 418 ------------------a~dp-------------aLRRPgrfdref~f~lp~~~ar~~Il~----------------Ih 450 (1080)
T KOG0732|consen 418 ------------------AIDP-------------ALRRPGRFDREFYFPLPDVDARAKILD----------------IH 450 (1080)
T ss_pred ------------------ccch-------------hhcCCcccceeEeeeCCchHHHHHHHH----------------Hh
Confidence 2221 12 23566677889999999999999 88
Q ss_pred HHHHhhhCCCCCCCccccccccccCChHHHHHHHhhhhhhhhhccCCCCCC-CCceeecchhHHHHHHHHhhhhhhhhhh
Q 000921 839 IRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQGIQSESKSL 917 (1223)
Q Consensus 839 ~~kml~~~~L~cddL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~-~~kl~Is~esl~~~l~~lq~i~~~~~~~ 917 (1223)
+++.- ..+.---+..+|..+..|-|+.|..|.--|.--++.+.....+. ..++.+...-+. +...+|
T Consensus 451 trkw~--~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ik----------V~~~~f 518 (1080)
T KOG0732|consen 451 TRKWE--PPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIK----------VEVRDF 518 (1080)
T ss_pred ccCCC--CCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhh----------hhhHhh
Confidence 87654 44444466778999999999999998877766565443222221 222222222111 111112
Q ss_pred hhhhhcccChhHHHHHHhcCCCCCCCCC-------------CCcccccCcHHHHHHHHHHHHccccChHh-hhcCCCCCC
Q 000921 918 KKSLKDVVTENEFEKKLLADVIPPSDIG-------------VTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKP 983 (1223)
Q Consensus 918 ~~al~evv~~~e~e~~ll~~vI~~~e~~-------------vtfdDIgGle~vk~~L~e~V~lpL~~pel-f~k~gl~~P 983 (1223)
..++....+...- ..+++..-.. .....+.-+......+.+...+-++..+. |.-.-+-+
T Consensus 519 ~~A~~~i~ps~~R-----~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~- 592 (1080)
T KOG0732|consen 519 VEAMSRITPSSRR-----SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICR- 592 (1080)
T ss_pred hhhhhccCCCCCc-----cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcC-
Confidence 2111111111000 0111110000 00001111222222222222221111111 01011111
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCceeEeecccccchhhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccE
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1062 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el-g~pfI~Vs~seL~skIDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rV 1062 (1223)
..+|+.|..|.|=+.+..||-+.+ +++......+.++.. .+. ......++..|+..=... ..|
T Consensus 593 -~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d-------~~~---~~~~~~iv~i~~eaR~~~-----psi 656 (1080)
T KOG0732|consen 593 -PRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSD-------EGT---EDLEEEIVHIFMEARKTT-----PSI 656 (1080)
T ss_pred -cHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhc-------ccc---ccHHHHHHHHHHHHhccC-----Cce
Confidence 247888999999999999999887 555544443333221 100 111123444444221111 123
Q ss_pred EEEeecCCCCCCCHHHHc---ccCceeeecCCCHHHHHHHHHHHHhhcccC----Cccc-HHHHHHHccCCcHHHHHHHH
Q 000921 1063 LVLAATNRPFDLDEAVVR---RLPRRLMVNLPDAPNREKIIRVILAKEELA----SDVD-LEGIANMADGYSGSDLKNLC 1134 (1223)
Q Consensus 1063 LVIATTNrp~~LD~ALlR---RFd~~I~VplPd~eeR~~ILr~~L~k~~l~----~dvD-L~~LA~~TeGySGaDL~~L~ 1134 (1223)
+.|= .+|.-++. +|...+..-++....+..|...+....... .-+. ....+.-+-+|...+|+.+|
T Consensus 657 ~~ip------~~d~w~~~~p~s~~~~~~~~l~~~~~~t~i~e~~t~~~~~~~~~~~~~t~~~p~~~s~~~ff~r~I~~~~ 730 (1080)
T KOG0732|consen 657 VFIP------NVDEWARVIPVSFLEEFLSSLDEKALSTPILELHTWDTSFESVNKSVVTLSKPSAESTGAFFKRLIRKIS 730 (1080)
T ss_pred eecc------chhhhhhcCcchhhhcchhcchhhhhccchhhhccccccccccCccccccccchhhhhHHHHHHHHHHHh
Confidence 3322 33433333 677777777777777777776655443211 1111 23455556678999999999
Q ss_pred HHHHHHHHHH
Q 000921 1135 VTAAHCPIRE 1144 (1223)
Q Consensus 1135 ~~Aa~~aire 1144 (1223)
...+..+.++
T Consensus 731 ~~~~~~~~k~ 740 (1080)
T KOG0732|consen 731 QEPSGEAGKR 740 (1080)
T ss_pred hhhhccccCC
Confidence 9888877765
No 362
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.60 E-value=0.029 Score=62.30 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCceeEeecccc
Q 000921 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL 1020 (1223)
|+|.|+||+|||++|+++|..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 466666655444
No 363
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=95.58 E-value=0.07 Score=64.40 Aligned_cols=186 Identities=22% Similarity=0.248 Sum_probs=106.7
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEe-eccc--------
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI-SMSS-------- 1019 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl-~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~V-s~se-------- 1019 (1223)
+|.|.+++|+.|.-++.-. ++.....|. .+-.-.|+|.|-||+-|+-|.+.|.+-+-.-.+.. .+++
T Consensus 343 EIyGheDVKKaLLLlLVGg---vd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGG---VDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCC---CCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 7899999999987665432 221111111 12224689999999999999999998763333321 1111
Q ss_pred ccc----h-----------------hhhcccccCCCChhHHHHHHHHHHHH--HhccCCCCCCccEEEEeecCCCC----
Q 000921 1020 ITS----K-----------------VDSMLGRRENPGEHEAMRKMKNEFMV--NWDGLRTKDKERVLVLAATNRPF---- 1072 (1223)
Q Consensus 1020 L~s----k-----------------IDsI~g~R~s~~e~e~~~rIl~~LL~--~LDgl~~k~~~rVLVIATTNrp~---- 1072 (1223)
+.+ . ||.+-...+. +..++..++.+--. .--|+.+.-|.|.-|+||+|..+
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~--DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYn 497 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES--DRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYN 497 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--hhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccC
Confidence 000 0 4544322221 11111222222111 12355555577889999998443
Q ss_pred ---------CCCHHHHcccCceeee-cCCCHHHHHHHHHHHHhh----cccCCc---cc------HHHHHHHccCCcHHH
Q 000921 1073 ---------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAK----EELASD---VD------LEGIANMADGYSGSD 1129 (1223)
Q Consensus 1073 ---------~LD~ALlRRFd~~I~V-plPd~eeR~~ILr~~L~k----~~l~~d---vD------L~~LA~~TeGySGaD 1129 (1223)
.|+.||++|||..+.+ ..|+.+.-..+.++++-- .....+ ++ +-.+|+....+.+.+
T Consensus 498 prrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~ 577 (721)
T KOG0482|consen 498 PRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEA 577 (721)
T ss_pred cccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHH
Confidence 3788999999987654 578887777777765522 111111 22 334566666788888
Q ss_pred HHHHHHHHHHH
Q 000921 1130 LKNLCVTAAHC 1140 (1223)
Q Consensus 1130 L~~L~~~Aa~~ 1140 (1223)
|..-+..|-..
T Consensus 578 l~dyi~~AYv~ 588 (721)
T KOG0482|consen 578 LADYITGAYVE 588 (721)
T ss_pred HHHHHHHHHHH
Confidence 88877766543
No 364
>PRK06696 uridine kinase; Validated
Probab=95.57 E-value=0.027 Score=61.65 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=33.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
+.-|.+.|++|+|||+||+.||..+ |.+++.+++.++..
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 4678899999999999999999998 77888877776653
No 365
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.54 E-value=0.038 Score=59.68 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
-|.+.|++|+|||++++.++..+|++++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 47899999999999999999988998874
No 366
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.51 E-value=0.074 Score=57.44 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=22.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHh-CCcee
Q 000921 987 ILLFGPPGTGKTMLAKAVATEA-GANFI 1013 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~el-g~pfI 1013 (1223)
|.+.|+||+|||++|+.|+..+ ++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i 29 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVI 29 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence 5788999999999999999998 44443
No 367
>PF13173 AAA_14: AAA domain
Probab=95.51 E-value=0.015 Score=58.17 Aligned_cols=37 Identities=38% Similarity=0.514 Sum_probs=31.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CceeEeeccccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSIT 1021 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg--~pfI~Vs~seL~ 1021 (1223)
+.++|+||+|||||++++.++..+. -+++.+++.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPR 41 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHH
Confidence 4689999999999999999999886 777777776543
No 368
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=95.50 E-value=0.26 Score=61.18 Aligned_cols=240 Identities=17% Similarity=0.140 Sum_probs=131.0
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCC---ceEEEEcCCCChHHHHHHH
Q 000921 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPC---KGILLFGPPGTGKTMLAKA 1003 (1223)
Q Consensus 927 ~~e~e~~ll~~vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~Pp---rGILL~GPPGTGKT~LAkA 1003 (1223)
.......+.+.+.| .|.|.+.+|.-|.-.+.-.. ......| .+. -+|++.|-|||||+-+.++
T Consensus 332 ~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv---~K~a~eg--~~lRGDinv~iVGDPgt~KSQfLk~ 397 (764)
T KOG0480|consen 332 DENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGV---HKSAGEG--TSLRGDINVCIVGDPGTGKSQFLKA 397 (764)
T ss_pred CchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCc---cccCCCC--ccccCCceEEEeCCCCccHHHHHHH
Confidence 34455555566655 68999999998865543322 1111111 222 3599999999999999999
Q ss_pred HHHHhCCceeE-eeccc---cc----------------------ch----hhhcccccCCCChhHHHHHHHHHHHHHhcc
Q 000921 1004 VATEAGANFIN-ISMSS---IT----------------------SK----VDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1053 (1223)
Q Consensus 1004 IA~elg~pfI~-Vs~se---L~----------------------sk----IDsI~g~R~s~~e~e~~~rIl~~LL~~LDg 1053 (1223)
++.-+-.-++. =++++ |. +. ||.+-.... .++. .++..|+.
T Consensus 398 v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~--~dqv-------AihEAMEQ 468 (764)
T KOG0480|consen 398 VCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV--KDQV-------AIHEAMEQ 468 (764)
T ss_pred HhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccCh--HhHH-------HHHHHHHh
Confidence 99866333221 11111 11 00 444321111 1121 22223322
Q ss_pred ---------CCCCCCccEEEEeecCCCC-------------CCCHHHHcccCceee-ecCCCHHHHHHHHHHHHhhcccC
Q 000921 1054 ---------LRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRLM-VNLPDAPNREKIIRVILAKEELA 1110 (1223)
Q Consensus 1054 ---------l~~k~~~rVLVIATTNrp~-------------~LD~ALlRRFd~~I~-VplPd~eeR~~ILr~~L~k~~l~ 1110 (1223)
+...-+.|--||||+|... .+..++++|||..+- +.-|++..=..|-++++.....-
T Consensus 469 QtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i 548 (764)
T KOG0480|consen 469 QTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGI 548 (764)
T ss_pred heehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccc
Confidence 2222245667899998543 267899999997654 67899988888888888764321
Q ss_pred CcccHHHHHHHccCCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccCCC---C---------------
Q 000921 1111 SDVDLEGIANMADGYSGSDLKNLCVTAAH-------CPIREILEKEKKERALALAENRASP---P--------------- 1165 (1223)
Q Consensus 1111 ~dvDL~~LA~~TeGySGaDL~~L~~~Aa~-------~aireilek~kk~~~~~~~e~~~~~---~--------------- 1165 (1223)
.+ -...-.+|+-.+++..+.-|.. .|.+.+.+.. ............ .
T Consensus 549 ~~-----~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y---~~lR~~~~~~~~~~s~~ITvRqLESlIRLsE 620 (764)
T KOG0480|consen 549 DD-----ATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKY---KGLRQRDAQGNNRSSYRITVRQLESLIRLSE 620 (764)
T ss_pred cc-----cccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHH---HHHHHhhccccCcccccccHHHHHHHHHHHH
Confidence 11 1111146888888877766641 1111111111 111111100000 0
Q ss_pred -CCCCCCCCCCCHHHHHHHHHhcCccccccccc
Q 000921 1166 -LYSSVDVRPLKMDDFKYAHEQVCASVSSESTN 1197 (1223)
Q Consensus 1166 -~~~~~~~rpLT~eDF~~ALe~v~PS~s~e~~~ 1197 (1223)
.+.......+|.+|.+.|.+-++.|+.+-...
T Consensus 621 A~Ar~~~~devt~~~v~ea~eLlk~Siv~ve~d 653 (764)
T KOG0480|consen 621 ARARVECRDEVTKEDVEEAVELLKKSIVRVEGD 653 (764)
T ss_pred HHHhhhhhhhccHHHHHHHHHHHHhhheeeccc
Confidence 01123345799999999999999988765333
No 369
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.48 E-value=0.032 Score=71.37 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=66.2
Q ss_pred cceeEEcc---CCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCceEEeeCCCEEEEccCC
Q 000921 151 GAVFTVGH---NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG 227 (1223)
Q Consensus 151 ~~~~tvG~---~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~LE~~~~~G~v~vNg~~~~k~~~~~L~~GDEv~f~~~~ 227 (1223)
.-+=+||| +..-|+.|.++.|---||.|++. +|.-|+.|+-...--| |||||.|.- ...|+.||.|+|+ +
T Consensus 476 eG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~--~g~~~vtl~p~e~aet-yVNGk~v~e--p~qL~~GdRiilG--~ 548 (1221)
T KOG0245|consen 476 EGETRVGREDASSRQDIVLSGQLIREQHCSIRNE--GGNDVVTLEPCEDAET-YVNGKLVTE--PTQLRSGDRIILG--G 548 (1221)
T ss_pred cCceecCCCCcccCCceEecchhhhhhceEEEec--CCCceEEeccCCccce-eEccEEcCC--cceeccCCEEEEc--C
Confidence 45668995 34569999999999999999986 4444888988877766 899999976 6789999999995 6
Q ss_pred CeeEEeeecC
Q 000921 228 KHSYIFQQLS 237 (1223)
Q Consensus 228 ~~ayifq~l~ 237 (1223)
+|.|.|-+..
T Consensus 549 ~H~frfn~P~ 558 (1221)
T KOG0245|consen 549 NHVFRFNHPE 558 (1221)
T ss_pred ceeEEecCHH
Confidence 8999998873
No 370
>PRK01184 hypothetical protein; Provisional
Probab=95.47 E-value=0.012 Score=62.00 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEe
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~V 1015 (1223)
-|+|.||||+|||++++ ++.++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 57899999999999987 889999888654
No 371
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.45 E-value=0.013 Score=60.35 Aligned_cols=29 Identities=41% Similarity=0.702 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEe
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~V 1015 (1223)
|.+.|++|+|||++|+.+|..+|++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999997653
No 372
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.44 E-value=0.017 Score=60.42 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCceeEeecccc
Q 000921 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL 1020 (1223)
+|++||||||||+|+..++.+. |.+++.++..+-
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 7999999999999999988764 667777776543
No 373
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.011 Score=63.13 Aligned_cols=30 Identities=43% Similarity=0.832 Sum_probs=24.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeec
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~ 1017 (1223)
-|+|.||||+||||+|+.||+.++ +..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlst 31 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDT 31 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcH
Confidence 489999999999999999999944 444444
No 374
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.37 E-value=0.013 Score=60.56 Aligned_cols=26 Identities=42% Similarity=0.671 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcee
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI 1013 (1223)
|.|.|+||||||+|+++||.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 88876
No 375
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.34 E-value=0.012 Score=62.64 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 000921 987 ILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~el 1008 (1223)
.|++||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998777777665
No 376
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.32 E-value=0.021 Score=66.03 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=32.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~s 1022 (1223)
.-|++.||+|+|||+||..||.+++.+++..+.-.+..
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~ 42 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYR 42 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceee
Confidence 56899999999999999999999998887776654443
No 377
>PLN02674 adenylate kinase
Probab=95.30 E-value=0.017 Score=64.87 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
...|+|.||||+|||++|+.||..++++.+ ++.+++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~Gdll 66 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDML 66 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHH
Confidence 356999999999999999999999986554 455544
No 378
>PRK14526 adenylate kinase; Provisional
Probab=95.28 E-value=0.016 Score=63.55 Aligned_cols=33 Identities=33% Similarity=0.656 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeecccc
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL 1020 (1223)
.|+|.||||+|||++++.||..++++++ ++.++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChH
Confidence 3789999999999999999999987664 44444
No 379
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.27 E-value=0.088 Score=55.15 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccccc
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~ 1021 (1223)
+.-|.|.|+||+|||++|++||..+ +..++.++...+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 3578999999999999999999987 4456666665443
No 380
>PF13245 AAA_19: Part of AAA domain
Probab=95.25 E-value=0.026 Score=52.26 Aligned_cols=23 Identities=48% Similarity=0.681 Sum_probs=17.1
Q ss_pred eEEEEcCCCChHH-HHHHHHHHHh
Q 000921 986 GILLFGPPGTGKT-MLAKAVATEA 1008 (1223)
Q Consensus 986 GILL~GPPGTGKT-~LAkAIA~el 1008 (1223)
-+++.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566999999999 5556665554
No 381
>PTZ00202 tuzin; Provisional
Probab=95.22 E-value=0.12 Score=62.30 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=47.6
Q ss_pred cccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccc
Q 000921 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1223)
Q Consensus 948 fdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~se 1019 (1223)
..++.|-+....+|.+.+.. .... .++-++|.||+|||||+|++.++..++.+.+.++...
T Consensus 261 ~~~FVGReaEla~Lr~VL~~----------~d~~-~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRR----------LDTA-HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhc----------cCCC-CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 34788999999999887753 1112 2357789999999999999999999998877777664
No 382
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.014 Score=62.15 Aligned_cols=35 Identities=31% Similarity=0.556 Sum_probs=29.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk 1023 (1223)
-|++.|.||||||++++.|+ ++|.+.+.++ ++..+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~~e 36 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELAKE 36 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHHHh
Confidence 37899999999999999999 9999988766 55443
No 383
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.15 E-value=0.039 Score=60.01 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=55.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceeE-eecccccc--------hhhhcccccCCCChhHHHHHHHHHHHHHhccC
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSITS--------KVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1054 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~elg~pfI~-Vs~seL~s--------kIDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl 1054 (1223)
...++|.|+.|+|||++.+.|+.+.-...+. ....+... .+|+|.+.... + ...+++.+-...+.+
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~~~~d~~~~~~~kd~~~~l~~~~iveldEl~~~~k~--~---~~~lK~~iT~~~~~~ 126 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPEYFSDSINDFDDKDFLEQLQGKWIVELDELDGLSKK--D---VEALKSFITRRTDTY 126 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHHhccCccccCCCcHHHHHHHHhHheeHHHHhhcchh--h---HHHHHHHhcccceee
Confidence 3567899999999999999997763221111 11111111 15666543311 1 123333332333333
Q ss_pred CCC-------CCccEEEEeecCCCCCCC-HHHHcccCceeeecC
Q 000921 1055 RTK-------DKERVLVLAATNRPFDLD-EAVVRRLPRRLMVNL 1090 (1223)
Q Consensus 1055 ~~k-------~~~rVLVIATTNrp~~LD-~ALlRRFd~~I~Vpl 1090 (1223)
... -.++.++|||||..+-|. +.--||| ..|.+..
T Consensus 127 R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~~ 169 (198)
T PF05272_consen 127 RPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVSK 169 (198)
T ss_pred ecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEcC
Confidence 221 235678899999988664 4566788 5555554
No 384
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.14 E-value=0.062 Score=62.81 Aligned_cols=29 Identities=34% Similarity=0.583 Sum_probs=25.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 000921 982 KPCKGILLFGPPGTGKTMLAKAVATEAGA 1010 (1223)
Q Consensus 982 ~PprGILL~GPPGTGKT~LAkAIA~elg~ 1010 (1223)
.+++|+.|||+-|+|||+|.-..-..+-.
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 46799999999999999999988887744
No 385
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.12 E-value=0.14 Score=64.02 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=49.7
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000921 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1223)
Q Consensus 927 ~~e~e~~ll~~vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~ 1006 (1223)
..++.+.+..+..||.. ..-.++.+.|.++. |..| +.+..|+|.|+||+|||++|++||.
T Consensus 355 gt~ir~~l~~G~~pP~~--------f~rpeV~~iL~~~~------~~r~------~~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 355 GTELRRRLREGLEIPEW--------FSFPEVVAELRRTY------PPRH------KQGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred HHHHHHHHHCCCCCChh--------hcHHHHHHHHHHHh------cccc------CCCeEEEEECCCCChHHHHHHHHHH
Confidence 44566666677777642 34566666666643 2222 2235789999999999999999999
Q ss_pred HhCC----ceeEeecccc
Q 000921 1007 EAGA----NFINISMSSI 1020 (1223)
Q Consensus 1007 elg~----pfI~Vs~seL 1020 (1223)
.++. +++.++...+
T Consensus 415 ~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 415 KLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred HhhhccCceEEEeCCcHH
Confidence 9875 4566666544
No 386
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.96 E-value=0.26 Score=54.39 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=32.1
Q ss_pred HHcccCceeeecCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHccCCcHHHHHH
Q 000921 1078 VVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKN 1132 (1223)
Q Consensus 1078 LlRRFd~~I~VplPd~eeR~~ILr~~L~k~~l~~dvDL~~LA~~TeGySGaDL~~ 1132 (1223)
+...||..|+|..|...-+..+++.+++-.. ...-|...+..+..|++..+...
T Consensus 125 l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~-~~~r~~~~~~~~~~g~~~~~~~~ 178 (220)
T cd02025 125 VSDFFDFSIYVDADEDDIEKWYIKRFLKLRE-TAFSDPDSYFHRYAKMSEEEAIA 178 (220)
T ss_pred HHHhCCeEEEEECCHHHHHHHHHHHHHHHHH-HHHhCchhhhhcccCCCHHHHHH
Confidence 6668999999999987665667776664211 01123344444445666655433
No 387
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.95 E-value=0.24 Score=53.60 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGA 1010 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~ 1010 (1223)
.-|.|.||+|+|||+|+++|+..+..
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34668999999999999999998763
No 388
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=94.93 E-value=0.03 Score=59.51 Aligned_cols=29 Identities=31% Similarity=0.340 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEe
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~V 1015 (1223)
|.|.|.+|+|||++++.++...+++++..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~ 30 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDA 30 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 67999999999999999999877887654
No 389
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.92 E-value=1.2 Score=54.07 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCceeEeecccc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSI 1020 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~el----g~pfI~Vs~seL 1020 (1223)
+|.-+++.||+|+|||++|..+|..+ |..+..|++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 45789999999999999998888764 566777776543
No 390
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.89 E-value=0.1 Score=55.17 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccccc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~ 1021 (1223)
++.-++|.|+||+|||++|++|+..+ +...+.++...+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 34678999999999999999999987 4455666665544
No 391
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.87 E-value=0.057 Score=55.42 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg~p 1011 (1223)
+..-|+|.|+.|+|||++++++++.++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34578999999999999999999999864
No 392
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.83 E-value=0.043 Score=64.38 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=45.5
Q ss_pred cc-cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-CceeEee
Q 000921 948 FD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-ANFINIS 1016 (1223)
Q Consensus 948 fd-DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg-~pfI~Vs 1016 (1223)
|+ ++.|+++.+.+|.+++...- .|+....+-+||.||+|+|||+|++.|.+-+. ++++.+.
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA--------~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~ 121 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAA--------QGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLK 121 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHH--------hccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEec
Confidence 44 89999999999988775411 22233346789999999999999999998873 4555543
No 393
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.83 E-value=0.2 Score=53.53 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC-CceeEeeccccc
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAG-ANFINISMSSIT 1021 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg-~pfI~Vs~seL~ 1021 (1223)
|.|.||+|+|||+|+++|+..++ .....++...+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 57899999999999999999873 334445554443
No 394
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.78 E-value=0.031 Score=50.36 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 000921 987 ILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~el 1008 (1223)
|.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 395
>PRK14529 adenylate kinase; Provisional
Probab=94.75 E-value=0.023 Score=62.87 Aligned_cols=28 Identities=36% Similarity=0.591 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcee
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI 1013 (1223)
-|+|.||||+|||++++.||..++++++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 3889999999999999999999998775
No 396
>PLN02165 adenylate isopentenyltransferase
Probab=94.70 E-value=0.082 Score=61.82 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=30.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL 1020 (1223)
.-++|.||+|+|||+||..||..++..++..+.-.+
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~Qv 79 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQV 79 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChhee
Confidence 468999999999999999999999987776554433
No 397
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.67 E-value=0.063 Score=62.36 Aligned_cols=144 Identities=19% Similarity=0.326 Sum_probs=80.9
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH---HHhCCceeEeeccc--ccch-
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA---TEAGANFINISMSS--ITSK- 1023 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA---~elg~pfI~Vs~se--L~sk- 1023 (1223)
.+.|..+..+.|.+++.+-.. ..-..++++.||.|+|||++....- ++.|-+|+.|...- ..++
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~----------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL----------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH----------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 356777777888777755221 1124789999999999998765443 35677777554432 1222
Q ss_pred ---------------hhhcccc----------------cCCCC-------h-hHHHHHHHHHH-HHHhccCCCCCCccEE
Q 000921 1024 ---------------VDSMLGR----------------RENPG-------E-HEAMRKMKNEF-MVNWDGLRTKDKERVL 1063 (1223)
Q Consensus 1024 ---------------IDsI~g~----------------R~s~~-------e-~e~~~rIl~~L-L~~LDgl~~k~~~rVL 1063 (1223)
++.-++. ....+ + +-+....-+.+ .+.+|-.. ....++.
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisq-s~r~Pic 173 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQ-SARAPIC 173 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHh-hcCCCeE
Confidence 0000000 00000 0 00001111122 22333222 2357899
Q ss_pred EEeecCCCCCCCH---HHHcccCce-eeecC-CCHHHHHHHHHHHH
Q 000921 1064 VLAATNRPFDLDE---AVVRRLPRR-LMVNL-PDAPNREKIIRVIL 1104 (1223)
Q Consensus 1064 VIATTNrp~~LD~---ALlRRFd~~-I~Vpl-Pd~eeR~~ILr~~L 1104 (1223)
||+.|.+.+.++- .+.+||.++ |+++. ....+-..|++..+
T Consensus 174 iig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 174 IIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9999999887664 555599877 55544 36788888888877
No 398
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.64 E-value=0.14 Score=61.40 Aligned_cols=60 Identities=25% Similarity=0.290 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccc
Q 000921 955 ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1223)
Q Consensus 955 e~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~se 1019 (1223)
..+++.+.+.+...+..+..+ ...++-|+|.||+|+|||+++..||..+ |..+..+++..
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~-----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF-----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc-----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 445555555544333322222 1124679999999999999999999877 44555555543
No 399
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.61 E-value=0.076 Score=65.19 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
.|.|.|+||||||++++.+|..++++|+..+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D 32 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMD 32 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECc
Confidence 4899999999999999999999999998544
No 400
>PLN02840 tRNA dimethylallyltransferase
Probab=94.58 E-value=0.056 Score=64.92 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=32.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk 1023 (1223)
.-|++.||+|+|||+||..||..++.++|.++.-.+...
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~ 60 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRG 60 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecc
Confidence 458899999999999999999999999888776554443
No 401
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.56 E-value=0.037 Score=60.15 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL 1020 (1223)
.-|++.|+||+|||++|+.+|..+++.+ +..+++
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~ 37 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDY 37 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHH
Confidence 5689999999999999999999998765 344443
No 402
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.50 E-value=0.2 Score=60.30 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=26.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCceeEeeccc
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 1019 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el----g~pfI~Vs~se 1019 (1223)
+.-++|.||+|+|||+++..||..+ |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3568899999999999999999754 44454454443
No 403
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.49 E-value=0.041 Score=65.71 Aligned_cols=45 Identities=36% Similarity=0.647 Sum_probs=38.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
.++++|.+.-+.+++.|.+- ..|||+.||||.|||++|.|+|.-+
T Consensus 243 k~~ledY~L~dkl~eRL~er-------------------aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEER-------------------AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EechhhcCCCHHHHHHHHhh-------------------hcceEEecCCCCChhHHHHHHHHHH
Confidence 46788888888888888652 2699999999999999999999876
No 404
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.47 E-value=0.077 Score=61.84 Aligned_cols=44 Identities=32% Similarity=0.408 Sum_probs=33.0
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 978 ~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
+|+ .+.+.++++||||||||+||-.++.+. |.+.+.|+...-.+
T Consensus 50 GGl-p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 50 GGL-PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 96 (321)
T ss_pred CCC-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhH
Confidence 443 344678999999999999998877665 67788887766443
No 405
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.45 E-value=0.061 Score=57.81 Aligned_cols=41 Identities=29% Similarity=0.561 Sum_probs=31.3
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccc
Q 000921 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1223)
Q Consensus 978 ~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~se 1019 (1223)
+|+ .+..-++++||||+|||+++..+|.+. +...+.++...
T Consensus 7 GGi-~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 7 GGV-ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 453 344678999999999999999998764 55677777654
No 406
>PLN02459 probable adenylate kinase
Probab=94.43 E-value=0.036 Score=62.78 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
.|+|.||||+|||++|+.||..++++.+ ++.+++
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~i--s~gdll 64 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHI--ATGDLV 64 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--eCcHHH
Confidence 4888999999999999999999986654 444443
No 407
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.39 E-value=0.033 Score=59.19 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=25.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
.-++|.||+|+|||+|++.||...+.+|+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 358899999999999999999988766543
No 408
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.38 E-value=0.64 Score=52.62 Aligned_cols=65 Identities=20% Similarity=0.152 Sum_probs=47.9
Q ss_pred HHcccCceeeecCCCHHHHHHHHHHHHhhc----ccCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 000921 1078 VVRRLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1143 (1223)
Q Consensus 1078 LlRRFd~~I~VplPd~eeR~~ILr~~L~k~----~l~~dvDL~~LA~~TeGySGaDL~~L~~~Aa~~air 1143 (1223)
+..|++.+|++++.+.++-...++..+..- .+.++.-+..++..+.| .+.-|.++|..|...+..
T Consensus 187 ~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 187 LEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 334898889999999998888888887663 33345557888888888 566788888777665544
No 409
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.33 E-value=0.053 Score=62.28 Aligned_cols=37 Identities=30% Similarity=0.502 Sum_probs=31.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk 1023 (1223)
|++.||+|+|||+||..||.+.+..+|.++.-.+...
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~ 38 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKG 38 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeee
Confidence 6899999999999999999999999888776555443
No 410
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.29 E-value=0.062 Score=62.02 Aligned_cols=30 Identities=27% Similarity=0.301 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCce
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAGANF 1012 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg~pf 1012 (1223)
.|..||+.|++|||||++|..||..++.+.
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 457899999999999999999999999884
No 411
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.25 E-value=0.11 Score=54.59 Aligned_cols=30 Identities=37% Similarity=0.681 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
-.|++.|+.|||||+++++++.+++++|+.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~d 42 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFID 42 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccc
Confidence 367889999999999999999999999975
No 412
>PRK05439 pantothenate kinase; Provisional
Probab=94.22 E-value=0.82 Score=53.30 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC-----CceeEeeccccc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSIT 1021 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg-----~pfI~Vs~seL~ 1021 (1223)
.+.-|.+.|+||+|||++|+.|+..++ .....|+..++.
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 346688999999999999999998764 234455555544
No 413
>PRK12338 hypothetical protein; Provisional
Probab=94.18 E-value=0.048 Score=63.38 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=26.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcee
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~elg~pfI 1013 (1223)
|.-|++.|+||+|||++|++||..+|+..+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 467899999999999999999999998653
No 414
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.10 E-value=0.37 Score=53.39 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEe
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~V 1015 (1223)
.-|.+.|++|+|||++|+.|+..++.+.+.+
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~ 39 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVV 39 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceE
Confidence 4567899999999999999999999774433
No 415
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.11 Score=58.45 Aligned_cols=147 Identities=21% Similarity=0.263 Sum_probs=97.4
Q ss_pred HHHHHHHHhhcccCCCCEEEEEcchhhhh--------ccChhHHHHHHHHhccCCC-----CEEEEEeccCCCcccccCC
Q 000921 689 AINELFEVALNESKSSPLIVFVKDIEKSL--------TGNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 755 (1223)
Q Consensus 689 ~i~~L~eVl~s~s~~~plIlyi~Dvek~l--------~~~~~~~~~~~~~l~~~~~-----~~~ii~s~~~~~~~~~~~~ 755 (1223)
.+.+||++..+ +..-|+||.+|+-.= .|.+|.-...-+.+.+|.| |+.++-+.+-+|.
T Consensus 258 mvrelf~mart---kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt------ 328 (435)
T KOG0729|consen 258 MVRELFEMART---KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT------ 328 (435)
T ss_pred HHHHHHHHhcc---cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC------
Confidence 48899999988 888999999999842 2455555444455555544 8888877774332
Q ss_pred CCCceeeccCcchhhhccccCCCCcccccccccccHHHHHHHHhhCCCeEEEcCCchhhHHHHHHHHHHHHHHHhhccch
Q 000921 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSN 835 (1223)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~rfe~~VeI~lPdeegrl~iwk~ql~~d~~~l~~~~n 835 (1223)
||.+ +|+ --|+.-+||.+|||-+||-.||+
T Consensus 329 ----------------ldpa-----------------llr--pgrldrkvef~lpdlegrt~i~k--------------- 358 (435)
T KOG0729|consen 329 ----------------LDPA-----------------LLR--PGRLDRKVEFGLPDLEGRTHIFK--------------- 358 (435)
T ss_pred ----------------cCHh-----------------hcC--CcccccceeccCCcccccceeEE---------------
Confidence 2210 000 01455789999999999999999
Q ss_pred hhhHHHHhhhCCCCCCCccccccccccCChHHHHHHHhhhhhhhhhccCCCCCCCCceeecchhHHHHHHH
Q 000921 836 IISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNI 906 (1223)
Q Consensus 836 ~ih~~kml~~~~L~cddL~~La~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~~~~kl~Is~esl~~~l~~ 906 (1223)
||.+.|.-...+ ..+-||.+--|-+|+||..+.--|--|++- ..+.+.+.++|..+++.
T Consensus 359 -ihaksmsverdi---r~ellarlcpnstgaeirsvcteagmfair--------arrk~atekdfl~av~k 417 (435)
T KOG0729|consen 359 -IHAKSMSVERDI---RFELLARLCPNSTGAEIRSVCTEAGMFAIR--------ARRKVATEKDFLDAVNK 417 (435)
T ss_pred -Eeccccccccch---hHHHHHhhCCCCcchHHHHHHHHhhHHHHH--------HHhhhhhHHHHHHHHHH
Confidence 888754322211 344577777899999999998877777763 11233455666555544
No 416
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=94.03 E-value=0.022 Score=51.08 Aligned_cols=35 Identities=34% Similarity=0.697 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHhcCccccccccccccchhHhhhcC
Q 000921 1173 RPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1209 (1223)
Q Consensus 1173 rpLT~eDF~~ALe~v~PS~s~e~~~~~p~v~WnDIGG 1209 (1223)
.+|+++||..||++++||++.+ -+..+.+|++.||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~--dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQE--DLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HH--HHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Confidence 4799999999999999999977 4567889999998
No 417
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=93.90 E-value=0.088 Score=64.87 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=48.5
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChHhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHH
Q 000921 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVA 1005 (1223)
Q Consensus 927 ~~e~e~~ll~~vI~~~e~~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl-~~PprGILL~GPPGTGKT~LAkAIA 1005 (1223)
...+..+++..+.| .|.|++.+|..+.-.+--...+.. .++. .+---.+||.|-|||||+-+.|.++
T Consensus 436 d~~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~kn~---~~khkvRGDinvLL~GDPGTaKSQFLKY~e 503 (854)
T KOG0477|consen 436 DPPIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPKNP---GGKHKVRGDINVLLLGDPGTAKSQFLKYAE 503 (854)
T ss_pred CccHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCccCC---CCCceeccceeEEEecCCCccHHHHHHHHH
Confidence 34455566676666 789999999998665533221110 0000 0111359999999999999999999
Q ss_pred HHhCCcee
Q 000921 1006 TEAGANFI 1013 (1223)
Q Consensus 1006 ~elg~pfI 1013 (1223)
+-...-++
T Consensus 504 K~s~RAV~ 511 (854)
T KOG0477|consen 504 KTSPRAVF 511 (854)
T ss_pred hcCcceeE
Confidence 88744433
No 418
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.90 E-value=0.089 Score=56.99 Aligned_cols=40 Identities=35% Similarity=0.572 Sum_probs=30.2
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecc
Q 000921 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1223)
Q Consensus 978 ~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~s 1018 (1223)
+|+ .+..-++++|+||+|||++|..+|.+. +.+.+.++..
T Consensus 14 GGi-~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 14 GGV-ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 453 334668999999999999999999876 4566666543
No 419
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=93.85 E-value=0.053 Score=67.35 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=30.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeec
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~ 1017 (1223)
.-|+|.|.||+|||++++.+|+.++++|+.++.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 458999999999999999999999999998764
No 420
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.83 E-value=0.046 Score=63.55 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeec
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~ 1017 (1223)
++.-++|.||+|+|||+++..||..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45678899999999999999999876 444444444
No 421
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.82 E-value=0.061 Score=57.10 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=30.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
-+|+.||||+|||++|..+|..++.+++.+......
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~ 38 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPF 38 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCC
Confidence 489999999999999999999988887776665433
No 422
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.75 E-value=0.088 Score=58.94 Aligned_cols=43 Identities=35% Similarity=0.544 Sum_probs=33.5
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccccc
Q 000921 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1223)
Q Consensus 978 ~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~ 1021 (1223)
+|+ ...+.+|++|+||||||+++..++.+. |-+.+.|+..+-.
T Consensus 18 GG~-p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 18 GGL-PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESP 63 (260)
T ss_pred CCC-cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCH
Confidence 443 345779999999999999999998775 7788888775543
No 423
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.74 E-value=0.13 Score=60.12 Aligned_cols=44 Identities=30% Similarity=0.398 Sum_probs=33.0
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 978 ~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
+|+ .+.+-+++|||||||||+||-.+|.+. |...+.|+...-.+
T Consensus 50 GGl-p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~ 96 (325)
T cd00983 50 GGY-PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALD 96 (325)
T ss_pred CCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHH
Confidence 443 334567899999999999999988654 67788888765433
No 424
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.74 E-value=0.092 Score=58.14 Aligned_cols=41 Identities=27% Similarity=0.473 Sum_probs=31.6
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccc
Q 000921 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1223)
Q Consensus 978 ~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~se 1019 (1223)
+|+ .+...+|++||||||||+||-.++.+. |-+.+.++..+
T Consensus 16 GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 16 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 554 456789999999999999998877653 67777777654
No 425
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.74 E-value=0.54 Score=51.83 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg 1009 (1223)
++.-+.|.||+|+|||+|++.|+..+.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346678899999999999999999874
No 426
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.72 E-value=0.08 Score=57.74 Aligned_cols=41 Identities=32% Similarity=0.565 Sum_probs=30.4
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCceeEeeccc
Q 000921 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 1019 (1223)
Q Consensus 978 ~gl~~PprGILL~GPPGTGKT~LAkAIA~el----g~pfI~Vs~se 1019 (1223)
+|+ .+...+|+.||||||||+|+..++.+. |-+.+.++..+
T Consensus 14 GGi-p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 14 GGI-PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCC-CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 554 345789999999999999999887554 78888777644
No 427
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.72 E-value=0.052 Score=56.92 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGA 1010 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~ 1010 (1223)
-++|.||+|+|||+++++||..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998753
No 428
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.71 E-value=0.045 Score=59.90 Aligned_cols=24 Identities=50% Similarity=0.672 Sum_probs=22.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAG 1009 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg 1009 (1223)
-|+|.|+||+|||++|+.+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 478999999999999999999984
No 429
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=93.70 E-value=0.062 Score=56.91 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEe
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~V 1015 (1223)
|.|.|++|+|||++++.++. +|++++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec
Confidence 68999999999999999999 88877654
No 430
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.70 E-value=0.1 Score=56.92 Aligned_cols=40 Identities=35% Similarity=0.602 Sum_probs=31.0
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecc
Q 000921 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1223)
Q Consensus 978 ~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~s 1018 (1223)
+|+ .+..-++++||||+|||++|..+|.+. +.+.+.++..
T Consensus 18 GGi-~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGF-ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 443 344668999999999999999999755 6677777664
No 431
>PRK13975 thymidylate kinase; Provisional
Probab=93.69 E-value=0.063 Score=56.94 Aligned_cols=29 Identities=38% Similarity=0.399 Sum_probs=25.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcee
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI 1013 (1223)
.-|.|.|++|+|||++++.||..++..+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~~ 31 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFWT 31 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 45889999999999999999999986543
No 432
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=93.69 E-value=0.078 Score=56.71 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=32.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk 1023 (1223)
+-|+|.|++-+|||++|++|...+..||+.+....+...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 358999999999999999999999999999998777663
No 433
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.67 E-value=0.13 Score=61.35 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=44.1
Q ss_pred cCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccc
Q 000921 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1223)
Q Consensus 952 gGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~se 1019 (1223)
.+++++...+.+.+..-+..+..+. ..+++-++|.||.|+|||+++..||..+ +..+..+++..
T Consensus 178 ~~~~~v~~~~~~~L~~~l~~~~~~~----~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 178 AHLDDITDWFVPYLSGKLAVEDSFD----LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred ccHHHHHHHHHHHhcCcEeeCCCce----ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 4567778888877766554443332 2345778999999999999999999866 44555555433
No 434
>PLN02348 phosphoribulokinase
Probab=93.59 E-value=0.47 Score=56.72 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGA 1010 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~ 1010 (1223)
.-|-+.|++|+|||++|+.|+..++.
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45679999999999999999999864
No 435
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.56 E-value=0.073 Score=53.97 Aligned_cols=30 Identities=37% Similarity=0.520 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCce
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAGANF 1012 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg~pf 1012 (1223)
+..-|+|+|+=|+|||+++|++|+.+|..-
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~ 43 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGIDE 43 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--S
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 346799999999999999999999998764
No 436
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.50 E-value=0.12 Score=58.67 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=38.4
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000921 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1223)
Q Consensus 946 vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg 1009 (1223)
.+++++|-.+...+.|++++.. +...+|+.||+|+|||++++++...+.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 5678888888888888776532 123589999999999999999987764
No 437
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.45 E-value=0.082 Score=56.26 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL 1020 (1223)
.-++|.||+|+|||+++++|+..++..+ ++...+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~--i~gd~~ 37 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKF--IDGDDL 37 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEE--ECCccc
Confidence 4588999999999999999999988754 444443
No 438
>PRK05973 replicative DNA helicase; Provisional
Probab=93.43 E-value=0.11 Score=58.33 Aligned_cols=38 Identities=37% Similarity=0.500 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccc
Q 000921 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1223)
Q Consensus 982 ~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~se 1019 (1223)
.+...+|+.|+||+|||+++-.+|.+. |.+.+.++..+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 455678999999999999999888765 77777666543
No 439
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.42 E-value=0.078 Score=56.71 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg 1009 (1223)
+..-|.|.||+|+|||+|++.|+..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 446799999999999999999999875
No 440
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.42 E-value=0.2 Score=57.16 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~s 1018 (1223)
+++-++|.||+|+|||+++..+|..+ |..+..+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45788899999999999999999876 5555555544
No 441
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.37 E-value=0.097 Score=54.66 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccc
Q 000921 986 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~se 1019 (1223)
-+++.||||+|||++++.+|..+ +..++.+++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 36899999999999999999876 56666666543
No 442
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.36 E-value=0.1 Score=58.80 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecc
Q 000921 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1223)
Q Consensus 982 ~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~s 1018 (1223)
.+...+|++||||||||+||-.+|.+. |-+.+.++..
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 345678999999999999999987753 5566666654
No 443
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.35 E-value=0.055 Score=56.59 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGA 1010 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~ 1010 (1223)
-|+|.||+|+|||+|++.|+.....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4889999999999999999997644
No 444
>PTZ00301 uridine kinase; Provisional
Probab=93.31 E-value=0.89 Score=50.05 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
+.-|-+.||||+|||+||+.|+.++
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 3457799999999999999999876
No 445
>PRK09354 recA recombinase A; Provisional
Probab=93.30 E-value=0.18 Score=59.50 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~s 1022 (1223)
..+-+++|||||||||+||-.++.+. |...+.|+...-.+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 101 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH
Confidence 34567899999999999999887654 77888888776443
No 446
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.28 E-value=0.13 Score=56.60 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=30.9
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecc
Q 000921 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1223)
Q Consensus 978 ~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~s 1018 (1223)
+|+ .+...++++|+||+|||+|+.+++.+. |.+.+.++..
T Consensus 20 gG~-~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 20 GGI-PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCC-cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 453 345778999999999999999998664 6677776663
No 447
>PRK08356 hypothetical protein; Provisional
Probab=93.22 E-value=0.082 Score=56.73 Aligned_cols=32 Identities=31% Similarity=0.306 Sum_probs=25.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~se 1019 (1223)
.-|+|.||||+|||++|+.|+ +.|++ .+++.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCC
Confidence 458899999999999999996 46766 445544
No 448
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.19 E-value=0.22 Score=53.90 Aligned_cols=34 Identities=41% Similarity=0.602 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~s 1018 (1223)
+.+++.||||||||+++++++..+ |..++.+.+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 468899999999999999987665 6666666554
No 449
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.12 E-value=0.1 Score=55.36 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=23.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCce
Q 000921 986 GILLFGPPGTGKTMLAKAVATEA---GANF 1012 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~el---g~pf 1012 (1223)
.|+|.|+||+|||++++.++..+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 38999999999999999999998 6664
No 450
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.12 E-value=0.11 Score=54.39 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCceeEeec
Q 000921 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~ 1017 (1223)
|.|.||+|+|||++++.||..+ |..++.+..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 6789999999999999999988 666665543
No 451
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=93.06 E-value=0.071 Score=55.89 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=22.1
Q ss_pred EcCCCChHHHHHHHHHHHhCCceeE
Q 000921 990 FGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 990 ~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
.||+|||||++++++|..++..++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~ 25 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLD 25 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEe
Confidence 3999999999999999999876654
No 452
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.04 E-value=0.075 Score=56.91 Aligned_cols=23 Identities=48% Similarity=0.641 Sum_probs=21.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAG 1009 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg 1009 (1223)
|-+.||+|+|||++|++|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999996
No 453
>PLN02748 tRNA dimethylallyltransferase
Probab=93.04 E-value=0.15 Score=62.27 Aligned_cols=39 Identities=31% Similarity=0.482 Sum_probs=32.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk 1023 (1223)
.-|++.||+|+|||.||..||..++..+|..+.-.+...
T Consensus 23 ~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrg 61 (468)
T PLN02748 23 KVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSG 61 (468)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCC
Confidence 468999999999999999999999988887766555554
No 454
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=93.03 E-value=0.56 Score=56.47 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHH--HHHHHHhCCceeEeecccccc
Q 000921 985 KGILLFGPPGTGKTMLA--KAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LA--kAIA~elg~pfI~Vs~seL~s 1022 (1223)
.-|+++||.|+||+.|+ ++|.. .-+.+.|+|..+..
T Consensus 18 TFIvV~GPrGSGK~elV~d~~L~~--r~~vL~IDC~~i~~ 55 (431)
T PF10443_consen 18 TFIVVQGPRGSGKRELVMDHVLKD--RKNVLVIDCDQIVK 55 (431)
T ss_pred eEEEEECCCCCCccHHHHHHHHhC--CCCEEEEEChHhhh
Confidence 45889999999999999 55554 44478888877665
No 455
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=93.01 E-value=0.28 Score=65.87 Aligned_cols=114 Identities=21% Similarity=0.251 Sum_probs=71.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch----------------------hhhcccccCC-------CCh
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----------------------VDSMLGRREN-------PGE 1036 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk----------------------IDsI~g~R~s-------~~e 1036 (1223)
-+|+.||..+|||.+...+|.+.|-.|++|+-.+-.+. ++++- ++. +-.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR--~GyWIVLDELNLA 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR--RGYWIVLDELNLA 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh--cCcEEEeeccccC
Confidence 49999999999999999999999999999988664433 11110 000 000
Q ss_pred hHHHHHHHHHHHHHhccCCCC-------CCccEEEEeecCCCCC------CCHHHHcccCceeeecCCCHHHHHHHHHH
Q 000921 1037 HEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRPFD------LDEAVVRRLPRRLMVNLPDAPNREKIIRV 1102 (1223)
Q Consensus 1037 ~e~~~rIl~~LL~~LDgl~~k-------~~~rVLVIATTNrp~~------LD~ALlRRFd~~I~VplPd~eeR~~ILr~ 1102 (1223)
....-..+|.||.--..+-.. ....++++||-|.|-. |..|++.|| .+++|.--.+++...||+.
T Consensus 968 pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedEle~ILh~ 1045 (4600)
T COG5271 968 PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDELEEILHG 1045 (4600)
T ss_pred cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHHHHHHHhc
Confidence 111223444444322222111 1234677788887754 777999999 6677776667777777765
No 456
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.89 E-value=0.086 Score=57.27 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCce
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAGANF 1012 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg~pf 1012 (1223)
.++-|+|.||+|+|||+|+++|+.. +.+|
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~-~~~~ 40 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER-KLPF 40 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc-CCcc
Confidence 3467889999999999999999754 3344
No 457
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.86 E-value=0.23 Score=55.94 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGA 1010 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~ 1010 (1223)
.-++|.||+|||||+|++.|++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46899999999999999999998854
No 458
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.86 E-value=0.16 Score=55.49 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=28.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecc
Q 000921 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1223)
Q Consensus 982 ~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~s 1018 (1223)
.+...++++||||+|||+|+..+|.+. |-+.+.++..
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 345789999999999999999887543 5566666653
No 459
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.86 E-value=0.11 Score=58.26 Aligned_cols=55 Identities=25% Similarity=0.481 Sum_probs=39.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000921 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1223)
Q Consensus 945 ~vtfdDIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~p 1011 (1223)
..++++++-.....+.+.+++...+ .....||+.||+|+|||++++++..+..-.
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhcccc
Confidence 4567777777666677766665411 113689999999999999999999887444
No 460
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.82 E-value=0.24 Score=52.64 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=34.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEeecccccch-----hhhccccc
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-----VDSMLGRR 1031 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~sk-----IDsI~g~R 1031 (1223)
+|+.|++|+|||++|..+|...+.+.+.+....-.+. |+..-..|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R 51 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRR 51 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhC
Confidence 6899999999999999999988878888766554332 55544444
No 461
>PRK06761 hypothetical protein; Provisional
Probab=92.82 E-value=0.1 Score=59.83 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEee
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs 1016 (1223)
+-|++.||||+|||++++.++..+....+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 45899999999999999999999976555444
No 462
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.79 E-value=0.18 Score=56.90 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=26.3
Q ss_pred ceE-EEEcCCCChHHHHHHHHHHHhCC---------ceeEeeccc
Q 000921 985 KGI-LLFGPPGTGKTMLAKAVATEAGA---------NFINISMSS 1019 (1223)
Q Consensus 985 rGI-LL~GPPGTGKT~LAkAIA~elg~---------pfI~Vs~se 1019 (1223)
..| =|+||||+|||.|+-.+|-.... ..++|+...
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEG 82 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSS
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCC
Confidence 344 39999999999999999876533 367776644
No 463
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=92.79 E-value=0.099 Score=57.60 Aligned_cols=29 Identities=41% Similarity=0.676 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
-|-|.||+|+|||++++.||..++++++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 57899999999999999999999988773
No 464
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.78 E-value=0.41 Score=49.88 Aligned_cols=112 Identities=23% Similarity=0.339 Sum_probs=59.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccchhhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCccEEE
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1064 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~skIDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~rVLV 1064 (1223)
+-|+|.||.|+|||+|+++|-.+-. ++-+-..-.+ .|.+.. .+++.-..++....|+..-... +-|++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~---~~~~ID---TPGEyiE~~~~y~aLi~ta~da-----d~V~l 69 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEY---YDNTID---TPGEYIENPRFYHALIVTAQDA-----DVVLL 69 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEe---cccEEE---CChhheeCHHHHHHHHHHHhhC-----CEEEE
Confidence 3489999999999999999976431 1111111111 111111 1122222234555555443321 33444
Q ss_pred Ee-ecCCCCCCCHHHHcccCcee-----eecCCCHHHHHHHHHHHHhhcc
Q 000921 1065 LA-ATNRPFDLDEAVVRRLPRRL-----MVNLPDAPNREKIIRVILAKEE 1108 (1223)
Q Consensus 1065 IA-TTNrp~~LD~ALlRRFd~~I-----~VplPd~eeR~~ILr~~L~k~~ 1108 (1223)
+. +|......+|.+.+-|.+.+ .+.++..++..+..+.+|...+
T Consensus 70 l~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG 119 (143)
T PF10662_consen 70 LQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAG 119 (143)
T ss_pred EecCCCCCccCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcC
Confidence 44 55555678899988775543 2456644456666666665544
No 465
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.75 E-value=0.14 Score=55.08 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccccc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~ 1021 (1223)
.+.-|.|.|++|+|||+||++|+..+ |...+.++...+.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 34678899999999999999999987 4556777665544
No 466
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.69 E-value=0.24 Score=56.64 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CceeEeeccc
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 1019 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el----g-~pfI~Vs~se 1019 (1223)
+..++|.||+|+|||+++..||..+ | ..+..|+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4678999999999999999999876 3 4555555443
No 467
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=92.67 E-value=0.38 Score=52.24 Aligned_cols=30 Identities=33% Similarity=0.279 Sum_probs=23.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceeEeeccc
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~se 1019 (1223)
|-|.|++|+|||++++.++. .|++++ ++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~ 31 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGI--SADR 31 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEE--ecch
Confidence 56899999999999998875 565554 4444
No 468
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.65 E-value=0.1 Score=53.16 Aligned_cols=26 Identities=46% Similarity=0.735 Sum_probs=22.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCce
Q 000921 987 ILLFGPPGTGKTMLAKAVATEAGANF 1012 (1223)
Q Consensus 987 ILL~GPPGTGKT~LAkAIA~elg~pf 1012 (1223)
|+|.||+|+|||+|++.|+......|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 67899999999999999999865443
No 469
>PRK00023 cmk cytidylate kinase; Provisional
Probab=92.64 E-value=0.096 Score=57.89 Aligned_cols=30 Identities=33% Similarity=0.588 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
.-|.+.||+|+|||++|+.||..+|++++.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468899999999999999999999988864
No 470
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.54 E-value=0.69 Score=56.01 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCceeEeeccc
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 1019 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el-----g~pfI~Vs~se 1019 (1223)
.+.++|.||+|+|||+++..||..+ +..+..|++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 3578999999999999999988754 34555666544
No 471
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.51 E-value=0.19 Score=55.66 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeec
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~ 1017 (1223)
+..-+++.||||||||++|..++... |...+.++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 34678999999999999987666544 555655554
No 472
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=92.50 E-value=0.38 Score=59.65 Aligned_cols=96 Identities=21% Similarity=0.316 Sum_probs=0.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeecccccchhhhcccccCCCChhHHHHHHHHHHHHHhccCCCCCCc
Q 000921 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1060 (1223)
Q Consensus 981 ~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~skIDsI~g~R~s~~e~e~~~rIl~~LL~~LDgl~~k~~~ 1060 (1223)
..++.-|+|+|+||+|||++|+.++...++..+. .|.+ ......+......|.. +
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn---------~D~l----------g~~~~~~~~a~~~L~~------G 420 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVN---------ADTL----------GSTQNCLTACERALDQ------G 420 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEEC---------cHHH----------HHHHHHHHHHHHHHhC------C
Q ss_pred cEEEEeecCCCCCCCHHHHc-------ccCceeeecCCCHHHHHHHHHH
Q 000921 1061 RVLVLAATNRPFDLDEAVVR-------RLPRRLMVNLPDAPNREKIIRV 1102 (1223)
Q Consensus 1061 rVLVIATTNrp~~LD~ALlR-------RFd~~I~VplPd~eeR~~ILr~ 1102 (1223)
+-+||=+||.-..--..++. .+ +.+++..|...-+.++-.+
T Consensus 421 ~sVVIDaTn~~~~~R~~~i~lAk~~gv~v-~~i~~~~p~e~~~~Rn~~R 468 (526)
T TIGR01663 421 KRCAIDNTNPDAASRAKFLQCARAAGIPC-RCFLFNAPLAQAKHNIAFR 468 (526)
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHcCCeE-EEEEeCCCHHHHHHHHHhh
No 473
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.48 E-value=3.2 Score=47.47 Aligned_cols=58 Identities=21% Similarity=0.398 Sum_probs=41.3
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccc
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~se 1019 (1223)
+|.-.+++.+.|-.+.+- + ..|..++||.|.+|+||+++++-.|.-.++.++.+....
T Consensus 9 ~lVlf~~ai~hi~ri~Rv-L-----------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~ 66 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV-L-----------SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK 66 (268)
T ss_dssp -----HHHHHHHHHHHHH-H-----------CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST
T ss_pred ceeeHHHHHHHHHHHHHH-H-----------cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC
Confidence 567778888888776543 2 234568999999999999999999998999988876543
No 474
>PF13479 AAA_24: AAA domain
Probab=92.48 E-value=0.096 Score=57.19 Aligned_cols=20 Identities=55% Similarity=1.052 Sum_probs=18.5
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 000921 985 KGILLFGPPGTGKTMLAKAV 1004 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAI 1004 (1223)
..+|||||||+|||++|+.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 56999999999999999888
No 475
>PRK14974 cell division protein FtsY; Provisional
Probab=92.47 E-value=0.27 Score=57.77 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccc
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~se 1019 (1223)
.+.-|+|.||||+|||++++.+|..+ |..+..+.+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt 178 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 35789999999999999999998776 55555555543
No 476
>PRK12608 transcription termination factor Rho; Provisional
Probab=92.46 E-value=0.25 Score=58.81 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGA 1010 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~ 1010 (1223)
-+|++||||||||+|++.+|+.+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4799999999999999999998743
No 477
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=92.39 E-value=0.11 Score=66.69 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceeEe
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg~pfI~V 1015 (1223)
-|.|-||||||||++|+.||..+|+.|+..
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~ 32 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDT 32 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeec
Confidence 478999999999999999999999877643
No 478
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=92.38 E-value=0.18 Score=58.00 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcee
Q 000921 955 ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1223)
Q Consensus 955 e~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI 1013 (1223)
.++++.|++++-..|... ....+.++|+|+.|+|||++...|..-+|-..+
T Consensus 55 ~~~~~~l~~~lg~~L~~~--------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~ 105 (304)
T TIGR01613 55 NELIEYLQRVIGYSLTGN--------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYAT 105 (304)
T ss_pred HHHHHHHHHHHhHHhcCC--------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhc
Confidence 456667777665544321 223467899999999999999999888876553
No 479
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=92.38 E-value=0.79 Score=54.39 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=45.8
Q ss_pred cccCcHHHHHHHHHHHHccccChHhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceeEeeccccc
Q 000921 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 950 DIgGle~vk~~L~e~V~lpL~~pelf~k~gl~~PprGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~seL~ 1021 (1223)
.+.+-+.++..+..++-. .+ ..-|..|.|||-.|||||.+.+++-+.++.+.+.+++-+.+
T Consensus 7 ~v~~Re~qi~~L~~Llg~---~~--------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecf 67 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---NS--------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECF 67 (438)
T ss_pred CccchHHHHHHHHHHhCC---CC--------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhc
Confidence 455667777777665521 11 12346789999999999999999999999999999886643
No 480
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=92.35 E-value=0.73 Score=54.88 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=26.2
Q ss_pred Cc-eeccCCCChhHHHHHHHHHHHhhccCcEEEEec
Q 000921 493 PR-ILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1223)
Q Consensus 493 ~r-ILLsgpagsEiYqe~LaKALA~~f~akLLilDs 527 (1223)
|+ +||.||+|+ =-=+||||+|+.+|+.+++++.
T Consensus 148 PlgllL~GPPGc--GKTllAraiA~elg~~~i~vsa 181 (413)
T PLN00020 148 PLILGIWGGKGQ--GKSFQCELVFKKMGIEPIVMSA 181 (413)
T ss_pred CeEEEeeCCCCC--CHHHHHHHHHHHcCCCeEEEEH
Confidence 44 567899994 3458999999999999888774
No 481
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.35 E-value=1.7 Score=54.56 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
+.-|.+.||+|+|||+||++|+..+
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3567789999999999999999886
No 482
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.34 E-value=0.36 Score=56.98 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=25.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcee
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI 1013 (1223)
.-+++.||+|||||.|+..||+..+..++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~~~dvv 186 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYSNSDIV 186 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCCCCCEE
Confidence 45899999999999999999998776543
No 483
>PRK04328 hypothetical protein; Provisional
Probab=92.31 E-value=0.2 Score=56.19 Aligned_cols=41 Identities=24% Similarity=0.466 Sum_probs=30.3
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccc
Q 000921 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1223)
Q Consensus 978 ~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~se 1019 (1223)
+|+ .+...+|++||||||||+|+..++.+. |-+.+.++..+
T Consensus 18 GGi-p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 18 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCC-cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 453 345778999999999999999877652 56666666544
No 484
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.30 E-value=0.11 Score=56.24 Aligned_cols=25 Identities=40% Similarity=0.499 Sum_probs=22.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
|+-++|.||+|+|||+.+..||..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4678999999999999999999876
No 485
>PRK06851 hypothetical protein; Provisional
Probab=92.29 E-value=0.16 Score=60.36 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=38.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccchhhhcc
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKVDSML 1028 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~skIDsI~ 1028 (1223)
+-++|.|+||||||+|++.++.++ |..+....|+.--+.||.++
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdslD~vi 261 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSLDMVI 261 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCcceEE
Confidence 569999999999999999999988 88888888887777777764
No 486
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=92.29 E-value=0.2 Score=54.65 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=23.7
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000921 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 978 ~gl~~PprGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
+|+ .+..-++|+||||||||+|+..+|...
T Consensus 14 GGi-~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 14 GGI-ETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCC-CCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 443 344667999999999999999998653
No 487
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.21 E-value=0.13 Score=55.37 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~el 1008 (1223)
++-|+|.||+|+|||+|+++|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4678999999999999999998875
No 488
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=92.19 E-value=0.67 Score=62.09 Aligned_cols=119 Identities=20% Similarity=0.325 Sum_probs=72.3
Q ss_pred CCceEEEEcCCCChHHHH-HHHHHHHhCCceeEeeccc--ccc----h----------------------------hhhc
Q 000921 983 PCKGILLFGPPGTGKTML-AKAVATEAGANFINISMSS--ITS----K----------------------------VDSM 1027 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~L-AkAIA~elg~pfI~Vs~se--L~s----k----------------------------IDsI 1027 (1223)
..++++++||||+|||+| .-+|-.++-..++.++.+. ... . .|+|
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeI 1572 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEI 1572 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeecc
Confidence 348999999999999985 6677777777777665543 111 0 3443
Q ss_pred ccccCCC-C-hh--HHHHHHHH------HHHHHhccCCCCCCccEEEEeecCCCCCCC-----HHHHcccCceeeecCCC
Q 000921 1028 LGRRENP-G-EH--EAMRKMKN------EFMVNWDGLRTKDKERVLVLAATNRPFDLD-----EAVVRRLPRRLMVNLPD 1092 (1223)
Q Consensus 1028 ~g~R~s~-~-e~--e~~~rIl~------~LL~~LDgl~~k~~~rVLVIATTNrp~~LD-----~ALlRRFd~~I~VplPd 1092 (1223)
--++... . +. -..+.++. .+-+.|-.+ .+++|.|++|.+.+.- +.++|+ ...+++..|.
T Consensus 1573 nLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-----~~i~l~Gacnp~td~gRv~~~eRf~r~-~v~vf~~ype 1646 (3164)
T COG5245 1573 NLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-----CGIILYGACNPGTDEGRVKYYERFIRK-PVFVFCCYPE 1646 (3164)
T ss_pred CCccccccCCCceEEeeHHHHHhcccccchhhhHhhh-----cceEEEccCCCCCCcccCccHHHHhcC-ceEEEecCcc
Confidence 2111110 0 00 01111111 122333333 5689999999887754 344443 3668889999
Q ss_pred HHHHHHHHHHHHhhc
Q 000921 1093 APNREKIIRVILAKE 1107 (1223)
Q Consensus 1093 ~eeR~~ILr~~L~k~ 1107 (1223)
.....+|.++++...
T Consensus 1647 ~~SL~~Iyea~l~~s 1661 (3164)
T COG5245 1647 LASLRNIYEAVLMGS 1661 (3164)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999999887653
No 489
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=92.13 E-value=1 Score=53.06 Aligned_cols=38 Identities=32% Similarity=0.553 Sum_probs=33.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCceeEeecccccch
Q 000921 986 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 1023 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~seL~sk 1023 (1223)
-+|++|..||||-++|++--..+ ..||+-++|..+-+.
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~ 269 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED 269 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh
Confidence 38999999999999999987665 689999999887665
No 490
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.10 E-value=1.2 Score=57.91 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceeEeec
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~ 1017 (1223)
.+-++++||+|.|||+++...+...+ ++..++.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 35689999999999999999988777 7666655
No 491
>PRK10536 hypothetical protein; Provisional
Probab=92.07 E-value=0.11 Score=58.73 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 000921 986 GILLFGPPGTGKTMLAKAVATE 1007 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~e 1007 (1223)
-+++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999985
No 492
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=92.06 E-value=0.092 Score=54.54 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHHhCCceeEeec
Q 000921 993 PGTGKTMLAKAVATEAGANFINISM 1017 (1223)
Q Consensus 993 PGTGKT~LAkAIA~elg~pfI~Vs~ 1017 (1223)
||+|||++++.||..++++|+.++-
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~ 25 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDD 25 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCH
Confidence 7999999999999999999997544
No 493
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.06 E-value=0.13 Score=49.35 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 000921 986 GILLFGPPGTGKTMLAKAVATEAG 1009 (1223)
Q Consensus 986 GILL~GPPGTGKT~LAkAIA~elg 1009 (1223)
+++++||+|+|||+++.+++.++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 689999999999999999888764
No 494
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=92.05 E-value=0.31 Score=49.99 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceeEeec
Q 000921 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1223)
Q Consensus 984 prGILL~GPPGTGKT~LAkAIA~elg~pfI~Vs~ 1017 (1223)
.+.+||.+|+|+|||.++-.++.++..+++.+.+
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p 58 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELARKVLIVAP 58 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEES
T ss_pred CCCEEEEECCCCCcChhhhhhhhccccceeEecC
Confidence 3689999999999999999988887667776554
No 495
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.92 E-value=0.21 Score=54.71 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=30.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCceeEeeccc
Q 000921 982 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 1019 (1223)
Q Consensus 982 ~PprGILL~GPPGTGKT~LAkAIA~el----g~pfI~Vs~se 1019 (1223)
.+..-++|.|+||+|||+++..+|... +.+++.++...
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 344678999999999999999887765 78888877654
No 496
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.87 E-value=0.26 Score=53.80 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=31.3
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceeEeeccc
Q 000921 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1223)
Q Consensus 978 ~gl~~PprGILL~GPPGTGKT~LAkAIA~el---g~pfI~Vs~se 1019 (1223)
+|+ .+...+|+.|+||+|||+++..+|.+. |-+.+.++..+
T Consensus 11 gGi-~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 11 GGF-PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 443 345678999999999999999998653 66777776654
No 497
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=91.86 E-value=0.16 Score=61.73 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc-eeEeec
Q 000921 983 PCKGILLFGPPGTGKTMLAKAVATEAGAN-FINISM 1017 (1223)
Q Consensus 983 PprGILL~GPPGTGKT~LAkAIA~elg~p-fI~Vs~ 1017 (1223)
.|.-||+.|+||+|||++|..+|..+++. ++..+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~ 289 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDA 289 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhH
Confidence 46889999999999999999999999986 434433
No 498
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=91.85 E-value=0.17 Score=54.58 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeEe
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~V 1015 (1223)
.-|.|.|++|+|||++++.++. +|++++..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~ 32 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDA 32 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEe
Confidence 3588999999999999999998 88877654
No 499
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.84 E-value=0.15 Score=61.07 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceeE
Q 000921 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1223)
Q Consensus 985 rGILL~GPPGTGKT~LAkAIA~elg~pfI~ 1014 (1223)
+-|.|.|++|||||+|+++||..+|.+++.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 679999999999999999999999988764
No 500
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=91.78 E-value=3.2 Score=48.26 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=29.6
Q ss_pred eeeecCCCHHHHHHHHHHHHhhcccCC----cccHHHHHHHccCCcHHHHH
Q 000921 1085 RLMVNLPDAPNREKIIRVILAKEELAS----DVDLEGIANMADGYSGSDLK 1131 (1223)
Q Consensus 1085 ~I~VplPd~eeR~~ILr~~L~k~~l~~----dvDL~~LA~~TeGySGaDL~ 1131 (1223)
.|.|+..+.+|-..+++.|....-+.. ..-.+.+.-.+. -++++|.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~-GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN-GNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-CCHHHhc
Confidence 688999999999999999987754432 222333443333 3555554
Done!