Query 000921
Match_columns 1223
No_of_seqs 441 out of 3017
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 16:47:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000921.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_690-693//hhsearch_pdb/000921hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 473.3 17.9 518 450-1210 200-764 (806)
2 3cf2_A TER ATPase, transitiona 1.0 1 1 367.7 10.3 261 943-1216 198-488 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 358.8 23.2 223 942-1193 141-395 (405)
4 4b4t_M 26S protease regulatory 1.0 1 1 355.2 23.4 225 942-1195 174-430 (434)
5 4b4t_H 26S protease regulatory 1.0 1 1 354.6 23.4 234 942-1205 202-467 (467)
6 4b4t_I 26S protease regulatory 1.0 1 1 353.8 20.9 224 942-1194 175-430 (437)
7 4b4t_L 26S protease subunit RP 1.0 1 1 353.6 21.6 231 942-1206 174-436 (437)
8 4b4t_K 26S protease regulatory 1.0 1 1 340.9 24.2 222 942-1192 165-420 (428)
9 1ypw_A Transitional endoplasmi 1.0 1 1 315.6 5.2 370 799-1209 361-763 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 1.0 1 1 293.9 25.5 260 943-1212 6-322 (322)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=473.33 Aligned_cols=518 Identities=26% Similarity=0.399 Sum_probs=361.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 333345553310345788875534430244422-3257899888921303899706889999999984316809898456
Q 000921 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1223)
Q Consensus 450 ~vsfd~FPYylse~Tk~~L~~aa~vHLk~~~~~-ky~~~L~~~s~rILLsgpagsEiYqe~LaKALA~~f~akLLilDs~ 528 (1223)
+|+|+..-=+ +..|..|.+.....|+|.+.- +++. ...+-|||.||+|| =--+||||+|+.++++++.++..
T Consensus 200 ~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~~~g~---~~p~GILL~GPPGT--GKT~LAraiA~elg~~~~~v~~~ 272 (806)
T 3cf2_A 200 EVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIGV---KPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGTSCCC---CCCCEEEEECCTTS--CHHHHHHHHHTTTTCEEEEEEHH
T ss_pred CCCHHHHCCH--HHHHHHHHHHHHHHCCCHHHHHHCCC---CCCCEEEEECCCCC--CHHHHHHHHHHHHCCEEEEEEHH
T ss_conf 9990351499--99999999999987519898863589---99975897798999--88999999999719839999737
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 79999986420001211466667899998865226889732223445543456789998666233476444579801243
Q 000921 529 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 608 (1223)
Q Consensus 529 ~l~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~ 608 (1223)
++.+....+. |
T Consensus 273 ~l~sk~~ges---------e------------------------------------------------------------ 283 (806)
T 3cf2_A 273 EIMSKLAGES---------E------------------------------------------------------------ 283 (806)
T ss_dssp HHHSSCTTHH---------H------------------------------------------------------------
T ss_pred HHHCCCCHHH---------H------------------------------------------------------------
T ss_conf 9543331678---------9------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 15787864587889998865660663012478875023104688877889997778887510236533479986035688
Q 000921 609 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 688 (1223)
Q Consensus 609 g~~~~~~~~~~~~~~p~~g~~G~V~l~~e~n~s~kvgV~fd~~~~~~~dl~~~~e~~~~~~~~~~~~~~d~~~~~~~~k~ 688 (1223)
.
T Consensus 284 -------------------------------------------------------------------------------~ 284 (806)
T 3cf2_A 284 -------------------------------------------------------------------------------S 284 (806)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
T ss_conf -------------------------------------------------------------------------------9
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCHHHHHCC--------CHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 7999999965024788879997441444116--------845899999975039--998799972147786323489997
Q 000921 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGG 758 (1223)
Q Consensus 689 ~i~~L~evl~s~s~~~plIlyi~Dvek~l~~--------~~~~~~~~~~~l~~~--~~~~~ii~s~~~~~~~~~~~~~~~ 758 (1223)
.+..+|+... +..|-||||.+++.+... ..+..+.|...++.+ .++|+||++.+..+.
T Consensus 285 ~lr~lF~~A~---~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~--------- 352 (806)
T 3cf2_A 285 NLRKAFEEAE---KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS--------- 352 (806)
T ss_dssp HHHHHHHHHT---TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT---------
T ss_pred HHHHHHHHHH---HCCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH---------
T ss_conf 9999999999---7299299985100233445778873999999999999746666698799996698032---------
Q ss_pred CEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 50303576022210236899744211012450799999985--2798189819862448999999999999785115403
Q 000921 759 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 836 (1223)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~--rfe~~IeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ 836 (1223)
++ .+|-+ ||...|+|.+|++++|.+||+
T Consensus 353 ---------------------LD-------------~ALrR~GRFd~~I~i~~Pd~~~R~~IL~---------------- 382 (806)
T 3cf2_A 353 ---------------------ID-------------PALRRFGRFDREVDIGIPDATGRLEILQ---------------- 382 (806)
T ss_dssp ---------------------SC-------------TTTTSTTSSCEEEECCCCCHHHHHHHHH----------------
T ss_pred ---------------------CC-------------HHHHCCCCCCEEEECCCCCHHHHHHHHH----------------
T ss_conf ---------------------69-------------8885786361688668979899999999----------------
Q ss_pred HHHHHHHHHCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC-CCCCEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 668988540888887-7411010234688588989986665646410378999-89841323113799999876432101
Q 000921 837 ISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPG-KDAKLKISTESIMYGLNILQGIQSES 914 (1223)
Q Consensus 837 ihl~kml~~~~L~cd-dL~~la~~tk~~sgaeIe~LV~sA~S~al~~~~~~~~-~~~kl~Is~esl~~~l~~lq~l~~~~ 914 (1223)
+|+.++ .+..+ |+..++..|..|+++++..++..|...++.+...... .+.. +. .+.+..+....
T Consensus 383 ~~l~~~----~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~--~~-------~e~~~~~~v~~ 449 (806)
T 3cf2_A 383 IHTKNM----KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET--ID-------AEVMNSLAVTM 449 (806)
T ss_dssp HTCSSS----EECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCC--CS-------HHHHHHCEECT
T ss_pred HHHCCC----CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CC-------HHHHCCCEEEH
T ss_conf 985689----988643899999756899899999999999999998414512000133--20-------45522556519
Q ss_pred HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 23332110025736999988159899999887852234709999999999882125937662188778981599985899
Q 000921 915 KSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPG 994 (1223)
Q Consensus 915 ~~~~~sL~evv~~~e~e~~ll~~vI~~~e~~vtldDIgGle~vke~Lke~I~lpL~~pelf~k~gl~~PprgILL~GPPG 994 (1223)
.+|..++.++.+.. ..-+....+.++|++|+|++++++.|++.+.+|+.+|++|.+.+ ..|++|+|||||||
T Consensus 450 ~Df~~Al~~~~ps~-------~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPG 521 (806)
T 3cf2_A 450 DDFRWALSQSNPSA-------LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPG 521 (806)
T ss_dssp THHHHHHSSSSCCC-------CCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTT
T ss_pred HHHHHHHHHCCCCC-------CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCC
T ss_conf 99999997287831-------12344457887888817889999999999975666899997148-88886079866877
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCCH----------------------------HHHCCCCCCCC--CHHHHHHHHH
Q ss_conf 90799999999970992368624631100----------------------------11001455799--7059999999
Q 000921 995 TGKTMLAKAVATEAGANFINISMSSITSK----------------------------VDSMLGRRENP--GEHEAMRKMK 1044 (1223)
Q Consensus 995 TGKT~LAkAIA~elg~pfI~Is~SeL~sk----------------------------IDsL~g~R~s~--~e~e~~rrIl 1044 (1223)
||||++|+++|.+++.+|+.+++++++++ ||++++.|... ..+...++++
T Consensus 522 tGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~ 601 (806)
T 3cf2_A 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI 601 (806)
T ss_dssp SSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHH
T ss_pred CCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 89639999999983896687424112103343689999999999997299635204256776315888889866999999
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHC--CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHC
Q ss_conf 999998316777788628999603899999978770--367225406999889999999997210247901299999984
Q 000921 1045 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA 1122 (1223)
Q Consensus 1045 ~eLL~~LDgl~~~~~~rVLVIATTNrpd~LD~ALlR--RFd~~I~VplPd~eeR~~ILk~lL~k~~l~~dvDL~~LA~~T 1122 (1223)
++||++||++... .+|+||||||+|+.||+|++| ||++.|+|++|+.++|.+||+.++++.++..++|++.||++|
T Consensus 602 ~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t 679 (806)
T 3cf2_A 602 NQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT 679 (806)
T ss_dssp HHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------
T ss_pred HHHHHHHHCCCCC--CCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC
T ss_conf 9999997487877--99899993798043898471778550799979969999999999985679998778999999768
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 69909999999999999899999999999999998511699998888887787999999999862865344433322200
Q 000921 1123 DGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELL 1202 (1223)
Q Consensus 1123 ~GySGaDL~~Lv~~Aa~~airellek~k~~~~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Alekv~pS~s~~~~~~~p~v 1202 (1223)
+||||+||.++|++|++.|+|+.++............ ............++|+++||..|+++++||++.+. +....
T Consensus 680 ~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~--l~~y~ 756 (806)
T 3cf2_A 680 NGFSGADLTEICQRACKLAIRESIESEIRRERERQTN-PSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND--IRKYE 756 (806)
T ss_dssp ------CHHHHHHHHHHHHHHHHHC------------------------CCC----CCTTTC-----------------C
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH--HHHHH
T ss_conf 9999999999999999999999998564443330157-41001233456686479999999986799999999--99999
Q ss_pred HHHHHCCC
Q ss_conf 57651079
Q 000921 1203 QWNELYGE 1210 (1223)
Q Consensus 1203 ~WnDIGGl 1210 (1223)
+|.+.++.
T Consensus 757 ~~~~~f~~ 764 (806)
T 3cf2_A 757 MFAQTLQQ 764 (806)
T ss_dssp CCC-----
T ss_pred HHHHHHHC
T ss_conf 99999725
No 2
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=367.71 Aligned_cols=261 Identities=37% Similarity=0.568 Sum_probs=226.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98878522347099999999998821259376621887789815999858999079999999997099236862463110
Q 000921 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1223)
Q Consensus 943 e~~vtldDIgGle~vke~Lke~I~lpL~~pelf~k~gl~~PprgILL~GPPGTGKT~LAkAIA~elg~pfI~Is~SeL~s 1022 (1223)
-+.++|+||+|+++++++|++++.+|+++|++|...+ ..||+|||||||||||||++|+++|.+++.+|+.|+++++.+
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf 8999903514999999999999998751989886358-999975897798999889999999997198399997379543
Q ss_pred H----------------------------HHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 0----------------------------110014557997059999999999998316777788628999603899999
Q 000921 1023 K----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1074 (1223)
Q Consensus 1023 k----------------------------IDsL~g~R~s~~e~e~~rrIl~eLL~~LDgl~~~~~~rVLVIATTNrpd~L 1074 (1223)
+ +|.|++.|.... ++..++++++|+.+||++.. +.+|+||+|||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCHHHC
T ss_conf 33167899999999999972992999851002334457788-73999999999999746666--6987999966980326
Q ss_pred CHHHHC--CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 978770--367225406999889999999997210247901299999984699099999999999998999999999999
Q 000921 1075 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1152 (1223)
Q Consensus 1075 D~ALlR--RFd~~I~VplPd~eeR~~ILk~lL~k~~l~~dvDL~~LA~~T~GySGaDL~~Lv~~Aa~~airellek~k~~ 1152 (1223)
|++++| ||+++|+|++|+.++|.+||+.++.+..+..++++..||.+|+||+|+||.++|.+|++.++++........
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98885786361688668979899999999985689988643899999756899899999999999999998414512000
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 9999851169999888888778799999999986286534443332220057651079876764
Q 000921 1153 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKR 1216 (1223)
Q Consensus 1153 ~~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Alekv~pS~s~~~~~~~p~v~WnDIGGl~~~KKk 1216 (1223)
. ............++++||..|++.++|+..++.....|.+.|+||||++.+|+.
T Consensus 434 ~---------~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~ 488 (806)
T 3cf2_A 434 D---------ETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488 (806)
T ss_dssp C---------CCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHH
T ss_pred C---------CCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHH
T ss_conf 1---------332045522556519999999972878311234445788788881788999999
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=358.79 Aligned_cols=223 Identities=31% Similarity=0.521 Sum_probs=201.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99887852234709999999999882125937662188778981599985899907999999999709923686246311
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtldDIgGle~vke~Lke~I~lpL~~pelf~k~gl~~PprgILL~GPPGTGKT~LAkAIA~elg~pfI~Is~SeL~ 1021 (1223)
..|+++|+||||+++++++|++.|.+|+++|++|.+.| ..||+|+|||||||||||++|+|+|.+++++|+.++++++.
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g-i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG-IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 79999888828889999999999999874999998679-99888258858999987899999998518885288868951
Q ss_pred CH----------------------------HHHCCCCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 00----------------------------110014557997--059999999999998316777788628999603899
Q 000921 1022 SK----------------------------VDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 sk----------------------------IDsL~g~R~s~~--e~e~~rrIl~eLL~~LDgl~~~~~~rVLVIATTNrp 1071 (1223)
++ +|++++.|.... .+...++++++||++||++.. ..+|+||||||+|
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrp 297 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRL 297 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCH
T ss_conf 13354689999999999987099467653341111577888999768999999999996043388--8875788126981
Q ss_pred CCCCHHHHC--CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999978770--367225406999889999999997210247901299999984699099999999999998999999999
Q 000921 1072 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1072 d~LD~ALlR--RFd~~I~VplPd~eeR~~ILk~lL~k~~l~~dvDL~~LA~~T~GySGaDL~~Lv~~Aa~~airellek~ 1149 (1223)
+.||+|++| |||+.|+|++|+.++|.+||+.++.+.++..++|++.||..|+||||+||.++|++|++.|+++
T Consensus 298 d~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~----- 372 (405)
T 4b4t_J 298 DILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE----- 372 (405)
T ss_dssp SSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT-----
T ss_pred HHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 448996728776766997699699999999999855999996579999998779999999999999999999986-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99999998511699998888887787999999999862865344
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1193 (1223)
Q Consensus 1150 k~~~~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Alekv~pS~s~ 1193 (1223)
....|+++||..|++++.+....
T Consensus 373 ---------------------~~~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 373 ---------------------RRIHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp ---------------------TCSBCCHHHHHHHHHHHHHHHTC
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf ---------------------99875999999999998572655
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=355.24 Aligned_cols=225 Identities=30% Similarity=0.515 Sum_probs=204.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99887852234709999999999882125937662188778981599985899907999999999709923686246311
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtldDIgGle~vke~Lke~I~lpL~~pelf~k~gl~~PprgILL~GPPGTGKT~LAkAIA~elg~pfI~Is~SeL~ 1021 (1223)
..+.++|+||+|+++++++|++.|.+|+.+|++|.+.|+ .||+|||||||||||||++|+|+|.+++++|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 897998676095799999999999999749999986799-9887268779499988999999999959988998644643
Q ss_pred CH----------------------------HHHCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 00----------------------------1100145579970--59999999999998316777788628999603899
Q 000921 1022 SK----------------------------VDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 sk----------------------------IDsL~g~R~s~~e--~e~~rrIl~eLL~~LDgl~~~~~~rVLVIATTNrp 1071 (1223)
++ +|++++.|..... .....+++++||+.||++... .+|+||||||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSC
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCC
T ss_conf 134563899999999999861990896033256652257788887469999999999971366888--998999948992
Q ss_pred CCCCHHHHC--CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999978770--367225406999889999999997210247901299999984699099999999999998999999999
Q 000921 1072 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1072 d~LD~ALlR--RFd~~I~VplPd~eeR~~ILk~lL~k~~l~~dvDL~~LA~~T~GySGaDL~~Lv~~Aa~~airellek~ 1149 (1223)
+.||+|++| |||+.|+|++|+.++|.+||+.++++..+..+++++.||+.|+||||+||.++|++|++.|+++
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~----- 405 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN----- 405 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH-----
T ss_pred HHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 233996715774038998089599999999999856899987679999998689989999999999999999986-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999851169999888888778799999999986286534443
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1195 (1223)
Q Consensus 1150 k~~~~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Alekv~pS~s~~~ 1195 (1223)
....|+++||..|+++++|+.++..
T Consensus 406 ---------------------~~~~i~~~Df~~Al~~v~~~~~~~i 430 (434)
T 4b4t_M 406 ---------------------GQSSVKHEDFVEGISEVQARKSKSV 430 (434)
T ss_dssp ---------------------TCSSBCHHHHHHHHHSCSSSCCCCC
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf ---------------------9987699999999999737777573
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=354.56 Aligned_cols=234 Identities=32% Similarity=0.543 Sum_probs=207.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99887852234709999999999882125937662188778981599985899907999999999709923686246311
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtldDIgGle~vke~Lke~I~lpL~~pelf~k~gl~~PprgILL~GPPGTGKT~LAkAIA~elg~pfI~Is~SeL~ 1021 (1223)
..|+|+|+||||+++++++|++.|.+|+.+|++|.+.| ..||+|||||||||||||++|+|+|.+++++|+.++++++.
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHH
T ss_conf 79999878854599999999999998842999998779-99998147648999809999999984468986998869950
Q ss_pred CH----------------------------HHHCCCCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 00----------------------------110014557997--059999999999998316777788628999603899
Q 000921 1022 SK----------------------------VDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 sk----------------------------IDsL~g~R~s~~--e~e~~rrIl~eLL~~LDgl~~~~~~rVLVIATTNrp 1071 (1223)
++ +|.+++.|...+ .....++++++||++||++.. ..+|+||+|||+|
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrp 358 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRP 358 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCT
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCC
T ss_conf 26677899999999999876178467522321101355676778627899999999998655578--8837988287893
Q ss_pred CCCCHHHHC--CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999978770--367225406999889999999997210247901299999984699099999999999998999999999
Q 000921 1072 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1072 d~LD~ALlR--RFd~~I~VplPd~eeR~~ILk~lL~k~~l~~dvDL~~LA~~T~GySGaDL~~Lv~~Aa~~airellek~ 1149 (1223)
+.||+|++| |||+.|+|++|+.++|.+||+.++.+..+..+++++.||++|+||||+||.++|++|++.|+++
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~----- 433 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA----- 433 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH-----
T ss_pred CCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 117954636665507998389699999999999854899987779999997779999999999999999999983-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 99999998511699998888887787999999999862865344433322200576
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1205 (1223)
Q Consensus 1150 k~~~~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Alekv~pS~s~~~~~~~p~v~Wn 1205 (1223)
....++++||..|++++.++.... ......++||
T Consensus 434 ---------------------~~~~it~~Df~~Al~kV~~g~~k~-s~~~~y~~~n 467 (467)
T 4b4t_H 434 ---------------------RRKVATEKDFLKAVDKVISGYKKF-SSTSRYMQYN 467 (467)
T ss_dssp ---------------------TCSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHC
T ss_conf ---------------------887669999999999996474561-2578998619
No 6
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=353.75 Aligned_cols=224 Identities=35% Similarity=0.576 Sum_probs=202.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99887852234709999999999882125937662188778981599985899907999999999709923686246311
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtldDIgGle~vke~Lke~I~lpL~~pelf~k~gl~~PprgILL~GPPGTGKT~LAkAIA~elg~pfI~Is~SeL~ 1021 (1223)
..++++|+||||+++++++|++.|.+|+.+|++|...| ..||+|||||||||||||++|+|+|.+++++|+.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G-i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG-IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT-CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred CCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 68998600557699999999999999876999998679-99777884488999639999999999859987998879953
Q ss_pred CH----------------------------HHHCCCCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 00----------------------------110014557997--059999999999998316777788628999603899
Q 000921 1022 SK----------------------------VDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 sk----------------------------IDsL~g~R~s~~--e~e~~rrIl~eLL~~LDgl~~~~~~rVLVIATTNrp 1071 (1223)
++ +|++++.|...+ ......+++++||++||++.. ..+|+||||||+|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrp 331 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKI 331 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCS
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCH
T ss_conf 14476699999999999986599189876122203667788877658999999999997247678--8997999957980
Q ss_pred CCCCHHHHC--CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999978770--367225406999889999999997210247901299999984699099999999999998999999999
Q 000921 1072 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1072 d~LD~ALlR--RFd~~I~VplPd~eeR~~ILk~lL~k~~l~~dvDL~~LA~~T~GySGaDL~~Lv~~Aa~~airellek~ 1149 (1223)
+.||+|++| |||+.|+|++|+.++|.+||+.++.+..+..++|++.||..|+||||+||.++|++|++.|+++
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~----- 406 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE----- 406 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT-----
T ss_pred HHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 555998864886027998089699999999999964899997679999997679998999999999999999984-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 999999985116999988888877879999999998628653444
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1194 (1223)
Q Consensus 1150 k~~~~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Alekv~pS~s~~ 1194 (1223)
....|+++||..|++++.++...+
T Consensus 407 ---------------------~~~~It~eDf~~Al~rv~~~~~~e 430 (437)
T 4b4t_I 407 ---------------------RRMQVTAEDFKQAKERVMKNKVEE 430 (437)
T ss_dssp ---------------------TCSCBCHHHHHHHHHHHHHHHCCC
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf ---------------------899669999999999870798733
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=353.65 Aligned_cols=231 Identities=37% Similarity=0.616 Sum_probs=205.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99887852234709999999999882125937662188778981599985899907999999999709923686246311
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtldDIgGle~vke~Lke~I~lpL~~pelf~k~gl~~PprgILL~GPPGTGKT~LAkAIA~elg~pfI~Is~SeL~ 1021 (1223)
..+.++|+||||+++++++|++.|.+|+.+|++|...| ..||+|||||||||||||++|+|+|.+++++|+.+++++++
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g-~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG-IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHC
T ss_conf 59998966717859999999999999874999998679-89787699989999849999999999859998998414620
Q ss_pred CH----------------------------HHHCCCCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 00----------------------------110014557997--059999999999998316777788628999603899
Q 000921 1022 SK----------------------------VDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 sk----------------------------IDsL~g~R~s~~--e~e~~rrIl~eLL~~LDgl~~~~~~rVLVIATTNrp 1071 (1223)
++ +|.+++.|...+ ......+++++||++||++... .+|+||+|||+|
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp 330 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRP 330 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESST
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCC
T ss_conf 552017899999999999863896464204433333334478875368999999999983466677--986999933990
Q ss_pred CCCCHHHHC--CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999978770--367225406999889999999997210247901299999984699099999999999998999999999
Q 000921 1072 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1149 (1223)
Q Consensus 1072 d~LD~ALlR--RFd~~I~VplPd~eeR~~ILk~lL~k~~l~~dvDL~~LA~~T~GySGaDL~~Lv~~Aa~~airellek~ 1149 (1223)
+.||+|++| |||+.|+|++|+.++|.+||+.++.+..+..++|+..||..|+||||+||.++|.+|++.|+++
T Consensus 331 ~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~----- 405 (437)
T 4b4t_L 331 DTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD----- 405 (437)
T ss_dssp TSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 331897827771020013599699999999999865899986458999997689999999999999999999986-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 999999985116999988888877879999999998628653444333222005765
Q 000921 1150 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNE 1206 (1223)
Q Consensus 1150 k~~~~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Alekv~pS~s~~~~~~~p~v~WnD 1206 (1223)
....|+++||..|++++.++...+ ....|..
T Consensus 406 ---------------------~~~~i~~~d~~~Al~~v~~~~k~e-----~~~e~~K 436 (437)
T 4b4t_L 406 ---------------------DRDHINPDDLMKAVRKVAEVKKLE-----GTIEYQK 436 (437)
T ss_dssp ---------------------TCSSBCHHHHHHHHHHHHHTCC--------------
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHHCCCCC-----CCHHHHC
T ss_conf ---------------------998779999999999987503701-----2356425
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=340.89 Aligned_cols=222 Identities=33% Similarity=0.501 Sum_probs=198.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99887852234709999999999882125937662188778981599985899907999999999709923686246311
Q 000921 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1223)
Q Consensus 942 ~e~~vtldDIgGle~vke~Lke~I~lpL~~pelf~k~gl~~PprgILL~GPPGTGKT~LAkAIA~elg~pfI~Is~SeL~ 1021 (1223)
..++++|+||||++++++.|++.+.+|+.+|++|...|+ .||+|+|||||||||||++|+|+|.+++++|+.++++++.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 899998888516999999999999998739999986799-9886588889899888999999999867996999330443
Q ss_pred CH----------------------------HHHCCCCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 00----------------------------110014557997--059999999999998316777788628999603899
Q 000921 1022 SK----------------------------VDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1071 (1223)
Q Consensus 1022 sk----------------------------IDsL~g~R~s~~--e~e~~rrIl~eLL~~LDgl~~~~~~rVLVIATTNrp 1071 (1223)
++ +|++++.|.... .+...++++++||++|||+... .+|+||||||+|
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~ 321 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRA 321 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCH
T ss_conf 145460599999999999973997463002243303556787888718999999999984387877--997999961981
Q ss_pred CCCCHHHHC--CCCCEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999978770--367225406-99988999999999721024790129999998469909999999999999899999999
Q 000921 1072 FDLDEAVVR--RLPRRLMVN-LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1148 (1223)
Q Consensus 1072 d~LD~ALlR--RFd~~I~Vp-lPd~eeR~~ILk~lL~k~~l~~dvDL~~LA~~T~GySGaDL~~Lv~~Aa~~airellek 1148 (1223)
+.||+|++| |||+.|+|| +|+.++|..||+.++.+.++..++|++.||.+|+||||+||.++|++|++.|+++
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~---- 397 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK---- 397 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT----
T ss_pred HHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----
T ss_conf 5569666368751599981999999999999999855799996358999997779988999999999999999987----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCC
Q ss_conf 99999999851169999888888778799999999986-286534
Q 000921 1149 EKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ-VCASVS 1192 (1223)
Q Consensus 1149 ~k~~~~~a~~e~~~~~~~~~~~~~r~LtmeDF~~Alek-v~pS~s 1192 (1223)
....|+++||..|+.+ ++++..
T Consensus 398 ----------------------~~~~i~~~d~~~A~~~~~~~~~~ 420 (428)
T 4b4t_K 398 ----------------------NRYVILQSDLEEAYATQVKTDNT 420 (428)
T ss_dssp ----------------------TCSSBCHHHHHHHHHHHSCSCCC
T ss_pred ----------------------CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf ----------------------99877999999999976176689
No 9
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=315.61 Aligned_cols=370 Identities=29% Similarity=0.444 Sum_probs=264.8
Q ss_pred HHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 52798189819862448999999999999785115403668988540888887-74110102346885889899866656
Q 000921 799 RLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCV-DLESLCIKDQTLTTEGVEKIVGWALS 877 (1223)
Q Consensus 799 ~rfe~~IeI~lPdeegrl~iwk~ql~~d~~~l~~~~n~ihl~kml~~~~L~cd-dL~~la~~tk~~sgaeIe~LV~sA~S 877 (1223)
.||...++|.+|+.+.|+.+|. .+...+ .+..+ ++..++..+..++++.+..++..+..
T Consensus 361 gRf~~~i~i~~p~~~~r~~il~----------------~~~~~~----~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~ 420 (806)
T 1ypw_A 361 GRFDREVDIGIPDATGRLEILQ----------------IHTKNM----KLADDVDLEQVANETHGHVGADLAALCSEAAL 420 (806)
T ss_dssp TSSCEEECCCCCCHHHHHHHHH----------------HTTTTS----CCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHH----------------HHHHCC----CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 5544435569999999999999----------------987338----77622006777776147536899999999999
Q ss_pred HHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 46410378999898413231137999998764321012333211002573699998815989999988785223470999
Q 000921 878 HHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENV 957 (1223)
Q Consensus 878 ~al~~~~~~~~~~~kl~Is~esl~~~l~~lq~l~~~~~~~~~sL~evv~~~e~e~~ll~~vI~~~e~~vtldDIgGle~v 957 (1223)
.++.+...... .....+. ............++..++....+.. ........+.++|++++|++.+
T Consensus 421 ~a~r~~~~~i~------~~~~~~~--~~~~~~~~v~~~d~~~al~~~~~s~-------~~~~~~~~~~v~~~di~gl~~v 485 (806)
T 1ypw_A 421 QAIRKKMDLID------LEDETID--AEVMNSLAVTMDDFRWALSQSNPSA-------LRETVVEVPQVTWEDIGGLEDV 485 (806)
T ss_dssp HHHHHTTTTTS------CHHHHCC--HHHHTTCCCCTTHHHHHHHHSCCCC-------CCCCCCCCCCCSSCSSSCCCCH
T ss_pred HHHHHHCCCCC------HHHHCCC--HHHHHHHHHHHHHHHCCCCCCCCHH-------HHHHCCCCCCCCCCCCCCCHHH
T ss_conf 98764201011------5542010--1244455555665311112357144-------4200025754211112443022
Q ss_pred HHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCH--------------
Q ss_conf 999999988212593766218877898159998589990799999999970992368624631100--------------
Q 000921 958 KDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-------------- 1023 (1223)
Q Consensus 958 ke~Lke~I~lpL~~pelf~k~gl~~PprgILL~GPPGTGKT~LAkAIA~elg~pfI~Is~SeL~sk-------------- 1023 (1223)
++.|.+++.+|+.+++.|...++ .++.++||+||||||||++|+++|.+++.+|+.++++++.++
T Consensus 486 k~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~ 564 (806)
T 1ypw_A 486 KRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFD 564 (806)
T ss_dssp HHHHHTTTTSSSSSCTTTTCCCC-CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHHHH
T ss_conf 22189999755536398975488-87753689779998789999999998489879986167655305754788999999
Q ss_pred --------------HHHCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHC--CCCCE
Q ss_conf --------------11001455799--7059999999999998316777788628999603899999978770--36722
Q 000921 1024 --------------VDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRR 1085 (1223)
Q Consensus 1024 --------------IDsL~g~R~s~--~e~e~~rrIl~eLL~~LDgl~~~~~~rVLVIATTNrpd~LD~ALlR--RFd~~ 1085 (1223)
||.++..|... ......++++++||..||++.. ..+++||+|||+++.||++++| ||++.
T Consensus 565 ~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~allrpgRf~~~ 642 (806)
T 1ypw_A 565 KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQL 642 (806)
T ss_dssp HHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSC
T ss_pred HHHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCCCCCHHHHCCCCCCCE
T ss_conf 9870698599998744542112687777641689999999998754566--68769998438712279878376556730
Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 54069998899999999972102479012999999846990999999999999989999999999999999851169999
Q 000921 1086 LMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPP 1165 (1223)
Q Consensus 1086 I~VplPd~eeR~~ILk~lL~k~~l~~dvDL~~LA~~T~GySGaDL~~Lv~~Aa~~airellek~k~~~~~a~~e~~~~~~ 1165 (1223)
|+|++|+.++|..||+.++.+..+..++++..|++.+.||+|+||.++|+.|++.++++.++........... ......
T Consensus 643 i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~-~~~~~~ 721 (806)
T 1ypw_A 643 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSAME 721 (806)
T ss_dssp CCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC--------------------
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCC
T ss_conf 5559979999999999986459997522799999735005999999999999999999999987766543014-643123
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 88888877879999999998628653444333222005765107
Q 000921 1166 LYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1209 (1223)
Q Consensus 1166 ~~~~~~~r~LtmeDF~~Alekv~pS~s~~~~~~~p~v~WnDIGG 1209 (1223)
.........|+++||..|++.++||++.+ .+.....|.+.++
T Consensus 722 ~~~~~~~~~i~~~~f~~a~~~~~~svs~~--~~~~ye~~~~~~~ 763 (806)
T 1ypw_A 722 VEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTLQ 763 (806)
T ss_dssp -----CCTTTTTTSSCCCCCC-----------------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHH
T ss_conf 34346667607999999998678999999--9999999999997
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=293.92 Aligned_cols=260 Identities=35% Similarity=0.588 Sum_probs=212.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEEEECCCCC
Q ss_conf 988785223470999999999988212593766218877898159998589990799999999970-9923686246311
Q 000921 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSIT 1021 (1223)
Q Consensus 943 e~~vtldDIgGle~vke~Lke~I~lpL~~pelf~k~gl~~PprgILL~GPPGTGKT~LAkAIA~el-g~pfI~Is~SeL~ 1021 (1223)
.+.++|+||+|++.+++.|++.+.+|+.+|++|... ..|++++|||||||||||++|+++|.++ +.+|+.++++++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHH
T ss_conf 999998873498999999999999987698977178--899954999899996099999999998089967998749977
Q ss_pred CH----------------------------HHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 00----------------------------11001455799705999999999999831677778862899960389999
Q 000921 1022 SK----------------------------VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1073 (1223)
Q Consensus 1022 sk----------------------------IDsL~g~R~s~~e~e~~rrIl~eLL~~LDgl~~~~~~rVLVIATTNrpd~ 1073 (1223)
.+ +|.+.+.+... .....++++++|+..|+++.. ...+++||+|||+++.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWV 161 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCC-CCHHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCC
T ss_conf 64311999999999999986299589960478753556665-335899999999999743456-6888799996698565
Q ss_pred CCHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9978770367225406999889999999997210247-901299999984699099999999999998999999999999
Q 000921 1074 LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1152 (1223)
Q Consensus 1074 LD~ALlRRFd~~I~VplPd~eeR~~ILk~lL~k~~l~-~dvDL~~LA~~T~GySGaDL~~Lv~~Aa~~airellek~k~~ 1152 (1223)
+|++++|||++.+++++|+.++|..||+.++.+.... .+.++..||+.|+||+|+||.++|++|++.+++++......
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~- 240 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF- 240 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEE-
T ss_pred CCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 8999993167689957969999999999997217888999999999997699999999999999999999999864555-
Q ss_pred HHHHHHHCC--------------CC-------------CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 999985116--------------99-------------998888887787999999999862865344433322200576
Q 000921 1153 RALALAENR--------------AS-------------PPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1205 (1223)
Q Consensus 1153 ~~~a~~e~~--------------~~-------------~~~~~~~~~r~LtmeDF~~Alekv~pS~s~~~~~~~p~v~Wn 1205 (1223)
....+. +. ..........+|+++||..|+++++||++.+ .+....+|+
T Consensus 241 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~--~~~~~~~~~ 315 (322)
T 1xwi_A 241 ---KKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH--DLLKLKKFT 315 (322)
T ss_dssp ---EEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH--HHHHHHHHH
T ss_pred ---HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHH
T ss_conf ---542144333310000000255654441000012123650003578708999999998679999999--999999999
Q ss_pred HHCCCCC
Q ss_conf 5107987
Q 000921 1206 ELYGEGG 1212 (1223)
Q Consensus 1206 DIGGl~~ 1212 (1223)
+.||.+|
T Consensus 316 ~~~~~~~ 322 (322)
T 1xwi_A 316 EDFGQEG 322 (322)
T ss_dssp HTTCSCC
T ss_pred HHHCCCC
T ss_conf 9974699
Done!