BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000922
(1223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 94/144 (65%), Gaps = 3/144 (2%)
Query: 64 CKYDVFVSFRGEDTRDNFTSHLVAALCRKKIKTFIDE-QLDRGDDISPALLDAIERSKIS 122
KYDVF+SFRG DTR NF S L L R+ I+TF D+ +L+ G SP L IE S+ +
Sbjct: 7 TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 123 VIIFSENYASSKWCLDELVKILECKNKNAQMVVPVFYHVDPSDVRKQTGSFGDAFVKHEK 182
V++ SENYA+S WCLDELV I++ + K + V+P+FY V+P+ VR QTG + F KH
Sbjct: 67 VVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS 126
Query: 183 QFKGIPEKVQKWRVVLTEASNLSG 206
+ PEKV KWR LT + LSG
Sbjct: 127 --REDPEKVLKWRQALTNFAQLSG 148
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 96/146 (65%), Gaps = 4/146 (2%)
Query: 64 CKYDVFVSFRGEDTRDNFTSHLVAALCRKKIKTFIDE-QLDRGDDISPALLDAIERSKIS 122
+Y+VF+SFRG DTR+ FT L +L R KI TF D+ +L +G +I P LL AI++SKI
Sbjct: 34 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIY 93
Query: 123 VIIFSENYASSKWCLDELVKILECKNKNAQMVV-PVFYHVDPSDVRKQTGSFGDAFVKHE 181
V I S YA SKWCL EL +I+ + ++ + ++ P+FY VDPSDVR QTG + AF KH
Sbjct: 94 VPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHA 153
Query: 182 KQFKGIPEKVQKWRVVLTEASNLSGW 207
+F G + +Q W+ L + +L GW
Sbjct: 154 NKFDG--QTIQNWKDALKKVGDLKGW 177
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 82.0 bits (201), Expect = 2e-15, Method: Composition-based stats.
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 42/196 (21%)
Query: 790 FPEILEKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPE---------- 839
P+ ++ LE + L ++ LP+S+ L LREL + C EL++LPE
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 840 ----------------------NLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHG 877
++ NL++LK L + S +S L +I +L ++ EL G
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Query: 878 CRGLV-LPPILSGLSSLTKLDLSDC-DVMEIPQDIGRASSLEILDISGN-DFDSLPASIK 934
C L PPI G + L +L L DC +++ +P DI R + LE LD+ G + LP+ I
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Query: 935 QLSRLRELYLSNCSML 950
QL +NC +L
Sbjct: 299 QLP-------ANCIIL 307
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 803 IDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPS 862
++L S + + P +L L+ + D + L +LP+ L+ L R+ + LP+
Sbjct: 86 LELRSVPLPQFPDQAFRLSHLQHXTI-DAAGLXELPDTXQQFAGLETLTLARNPLRALPA 144
Query: 863 SIAYLDEVIELSFHGCRGLV-LPPILS---------GLSSLTKLDLSDCDVMEIPQDIGR 912
SIA L+ + ELS C L LP L+ GL +L L L + +P I
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204
Query: 913 ASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPEL-----PL-RVKLLDAS 966
+L+ L I + +L +I L +L EL L C+ L++ P + PL R+ L D S
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264
Query: 967 N 967
N
Sbjct: 265 N 265
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 59/214 (27%), Positives = 86/214 (40%), Gaps = 44/214 (20%)
Query: 650 LKALPFDFSPENLIELN-LPHSKVE-----QIWEGKKHFNNLVMLCLSHCESLRCFPQNI 703
L+++P P+ L+ L H ++ ++ + + F L L L+ LR P +I
Sbjct: 88 LRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASI 146
Query: 704 -HFRTLIEIDFSYCINLTEFPE------ISG------NVIELDLKGTAIEEIPSSI---- 746
L E+ C LTE PE SG N+ L L+ T I +P+SI
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ 206
Query: 747 -------------------ECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNF 787
L KLEELDL C L++ P L L L +CSN
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266
Query: 788 EIFPEILEKMECLEYIDLESTA-VKELPSSVEQL 820
P + ++ LE +DL + LPS + QL
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 749 LTKLEELDLAYCRRLKSL-PSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLES 807
L LE+LDL+ +L+S+ P++ L LH L L C E+ P + + L+Y+ L+
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 808 TAVKELP-SSVEQLKGLRELILEDCSELSKLPEN-LGNLKSLKRLFAKRSAISKL-PSSI 864
A++ LP + L L L L + +S +PE L SL RL ++ ++ + P +
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 196
Query: 865 AYLDEVIELSFHGCRGLVLPP-ILSGLSSLTKLDLSD----CDVMEIP 907
L ++ L LP L+ L +L L L+D CD P
Sbjct: 197 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 244
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 749 LTKLEELDLAYCRRLKSL-PSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLES 807
L LE+LDL+ +L+S+ P++ L LH L L C E+ P + + L+Y+ L+
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 808 TAVKELP-SSVEQLKGLRELILEDCSELSKLPEN-LGNLKSLKRLFAKRSAISKL-PSSI 864
A++ LP + L L L L + +S +PE L SL RL ++ ++ + P +
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 865 AYLDEVIELSFHGCRGLVLPP-ILSGLSSLTKLDLSD----CDVMEIP 907
L ++ L LP L+ L +L L L+D CD P
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 21/203 (10%)
Query: 749 LTKLEELDLAYCRRLKSL-PSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLES 807
LT LE+LDL+ +L+ + P++ L LH L L C E+ P + + L+Y+ L+
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 808 TAVKELP-SSVEQLKGLRELILEDCSELSKLPEN-LGNLKSLKRLFAKRSAISKL-PSSI 864
++ LP ++ L L L L + + +PE+ L SL RL ++ ++++ P +
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHG-NRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAF 196
Query: 865 AYLDEVIELSFHGCRGLVLPP-ILSGLSSLTKLDLSD----CDVMEIP-----QDIGRAS 914
L ++ L +LP +L L SL L L+D CD P Q R S
Sbjct: 197 RDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKF-RGS 255
Query: 915 SLEI-----LDISGNDFDSLPAS 932
S E+ ++G D L AS
Sbjct: 256 SSEVPCNLPQRLAGRDLKRLAAS 278
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 124/255 (48%), Gaps = 30/255 (11%)
Query: 719 LTEFP-EISGNVIELDLKGTAIEEI-PSSIECLTKLEELDLAYCRRLKSLPSSI-CKLKS 775
+TE P ++ N IEL T + I + LE+++++ L+ + + + L
Sbjct: 21 VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80
Query: 776 LHLLCLYNCSNF-EIFPEILEKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSEL 834
LH + + +N I PE + + L+Y+ + +T +K LP V ++ L++++L+
Sbjct: 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLD----- 134
Query: 835 SKLPENLGNLKSLKR-LFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSL 893
+ +N+ N+ +++R F S S I +L++ H C +G + L
Sbjct: 135 --IQDNI-NIHTIERNSFVGLS----FESVILWLNKNGIQEIHNCA-------FNG-TQL 179
Query: 894 TKLDLSDCDVM-EIPQDIGR-ASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQ 951
+L+LSD + + E+P D+ AS ILDIS SLP+ L L++L + L+
Sbjct: 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLK 237
Query: 952 SLPELPLRVKLLDAS 966
LP L V L++AS
Sbjct: 238 KLPTLEKLVALMEAS 252
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 76/150 (50%), Gaps = 21/150 (14%)
Query: 797 MECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSA 856
+E LE++D + + +K++ S LR LI D S R A
Sbjct: 395 LEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHT-----------------RVA 436
Query: 857 ISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEI-PQDIGRASS 915
+ + + ++ L EV++++ + + LP I + L +LT LDLS C + ++ P SS
Sbjct: 437 FNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 916 LEILDISGNDFDSLPASI-KQLSRLRELYL 944
L++L+++ N S+P I +L+ L++++L
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 112/253 (44%), Gaps = 35/253 (13%)
Query: 733 DLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPE 792
DL G EIPS + T L + L+ R +P I +L++L +L L N S P
Sbjct: 474 DLTG----EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 793 ILEKMECLEYIDLESTAVK-ELPSSVEQ---------LKGLRELILEDCSELSKLPENLG 842
L L ++DL + +P+++ + + G R + +++ + K G
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-DGMKKECHGAG 588
Query: 843 NL--------KSLKRLFAKR-----SAISKLPSSIAYLDE----VIELSFHGCRGLVLPP 885
NL + L RL + S + +S + + +++S++ G + P
Sbjct: 589 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI-PK 647
Query: 886 ILSGLSSLTKLDLSDCDVM-EIPQDIGRASSLEILDISGNDFDS-LPASIKQLSRLRELY 943
+ + L L+L D+ IP ++G L ILD+S N D +P ++ L+ L E+
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 944 LSNCSMLQSLPEL 956
LSN ++ +PE+
Sbjct: 708 LSNNNLSGPIPEM 720
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 752 LEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFE--IFPEILEKME-CLEYIDLEST 808
L+ LDL++ LP S+ L + L + +NF I P + + + L+ + L++
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 809 A-VKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAI-SKLPSSIAY 866
++P ++ L L L +P +LG+L L+ L + + ++P + Y
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 867 LD--EVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVM-EIPQDIGRASSLEILDISG 923
+ E + L F+ G + P LS ++L + LS+ + EIP+ IGR +L IL +S
Sbjct: 462 VKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 924 NDFD-SLPASI 933
N F ++PA +
Sbjct: 521 NSFSGNIPAEL 531
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 742 IPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCL-YNCSNFEIFPEILEKMECL 800
IPSS+ L+KL +L L +P + +K+L L L +N EI P L L
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNL 489
Query: 801 EYIDLESTAVK-ELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSL 847
+I L + + E+P + +L+ L L L + S +P LG+ +SL
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 126/261 (48%), Gaps = 42/261 (16%)
Query: 719 LTEFP-EISGNVIELDLKGTAIEEI-PSSIECLTKLEELDLAYCRRLKSLPSSI-CKLKS 775
+TE P ++ N IEL T + I + LE+++++ L+ + + + L
Sbjct: 21 VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80
Query: 776 LHLLCLYNCSNF-EIFPEILEKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSEL 834
LH + + +N I PE + + L+Y+ + +T +K LP V ++ L++++L+
Sbjct: 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLD----- 134
Query: 835 SKLPENLGNLKSLKR-LFAKRSAISKLPSSIAYLD-----EVIELSFHGCRGLVLPPILS 888
+ +N+ N+ +++R F S S I +L+ E+ +F+G
Sbjct: 135 --IQDNI-NIHTIERNSFVGLS----FESVILWLNKNGIQEIHNSAFNG----------- 176
Query: 889 GLSSLTKLDLSDCDVM-EIPQDIGR-ASSLEILDISGNDFDSLPA-SIKQLSRLRELYLS 945
+ L +L+LSD + + E+P D+ AS ILDIS SLP+ ++ L +LR
Sbjct: 177 --TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234
Query: 946 NCSMLQSLPELPLRVKLLDAS 966
N L+ LP L V L++AS
Sbjct: 235 N---LKKLPTLEKLVALMEAS 252
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 112/253 (44%), Gaps = 35/253 (13%)
Query: 733 DLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPE 792
DL G EIPS + T L + L+ R +P I +L++L +L L N S P
Sbjct: 477 DLTG----EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 793 ILEKMECLEYIDLESTAVK-ELPSSVEQ---------LKGLRELILEDCSELSKLPENLG 842
L L ++DL + +P+++ + + G R + +++ + K G
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN-DGMKKECHGAG 591
Query: 843 NL--------KSLKRLFAKR-----SAISKLPSSIAYLDE----VIELSFHGCRGLVLPP 885
NL + L RL + S + +S + + +++S++ G + P
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI-PK 650
Query: 886 ILSGLSSLTKLDLSDCDVM-EIPQDIGRASSLEILDISGNDFDS-LPASIKQLSRLRELY 943
+ + L L+L D+ IP ++G L ILD+S N D +P ++ L+ L E+
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 944 LSNCSMLQSLPEL 956
LSN ++ +PE+
Sbjct: 711 LSNNNLSGPIPEM 723
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 752 LEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFE--IFPEILEKME-CLEYIDLEST 808
L+ LDL++ LP S+ L + L + +NF I P + + + L+ + L++
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 809 A-VKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAI-SKLPSSIAY 866
++P ++ L L L +P +LG+L L+ L + + ++P + Y
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 867 LD--EVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVM-EIPQDIGRASSLEILDISG 923
+ E + L F+ G + P LS ++L + LS+ + EIP+ IGR +L IL +S
Sbjct: 465 VKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 924 NDFD-SLPASI 933
N F ++PA +
Sbjct: 524 NSFSGNIPAEL 534
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 742 IPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCL-YNCSNFEIFPEILEKMECL 800
IPSS+ L+KL +L L +P + +K+L L L +N EI P L L
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNL 492
Query: 801 EYIDLESTAVK-ELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSL 847
+I L + + E+P + +L+ L L L + S +P LG+ +SL
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 127/300 (42%), Gaps = 86/300 (28%)
Query: 733 DLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSL--------------HL 778
+L +++ E+P +E L +A C L LP LKSL L
Sbjct: 80 NLGLSSLPELPPHLESL-------VASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL 132
Query: 779 LCLYNCSN--FEIFPEILEKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSK 836
L SN E PE L+ L+ ID+++ ++K+LP L E I ++L +
Sbjct: 133 LEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEE 187
Query: 837 LPENLGNLKSLKRLFAKRSAISKLP-------SSIA---YLDEVIEL-------SFHGCR 879
LPE L NL L ++A +++ KLP S +A L+E+ EL + +
Sbjct: 188 LPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 246
Query: 880 GLV-----LPPILSGLS--------------SLTKLDLSD---CDVMEIPQDI------- 910
L+ LPP L L+ SLT LD+S+ + E+P ++
Sbjct: 247 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 306
Query: 911 -------GRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPELPLRVKLL 963
SLE L++S N LPA +L RL +++ + L +PELP +K L
Sbjct: 307 NEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL----IASFNHLAEVPELPQNLKQL 362
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 800 LEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISK 859
LE +L +++ ELP +E L C+ L++LPE +LKSL A+S
Sbjct: 76 LELNNLGLSSLPELPPHLESLVA-------SCNSLTELPELPQSLKSLLVDNNNLKALSD 128
Query: 860 LPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEIL 919
LP + YL +S + L P L S L +D+ + + ++P SLE +
Sbjct: 129 LPPLLEYLG----VSNNQLEKL---PELQNSSFLKIIDVDNNSLKKLP---DLPPSLEFI 178
Query: 920 DISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPELPLRVKLLDASN 967
N + LP ++ L L +Y N S L+ LP+LPL ++ + A N
Sbjct: 179 AAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGN 224
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 21/152 (13%)
Query: 614 VPGQITGSDMCTKVHLQQGLQYLPDELRYFHWYGYPLKALPFDFSPENLIELNLPHSKVE 673
+P +T D+ + GL LP L Y + +++L D P +L ELN+ ++K+
Sbjct: 275 LPQSLTFLDVSENIF--SGLSELPPNLYYLNASSNEIRSL-CDLPP-SLEELNVSNNKLI 330
Query: 674 QIWEGKKHFNNLVMLCLSHCESLRCFPQN-----IHFRTLIEI--------DFSYCINLT 720
++ L+ +H + PQN + + L E D +L
Sbjct: 331 ELPALPPRLERLIA-SFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389
Query: 721 EFPEISGNVIELDLKGTAIEE---IPSSIECL 749
E PE+ N+ +L ++ + E IP S+E L
Sbjct: 390 EVPELPQNLKQLHVETNPLREFPDIPESVEDL 421
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Query: 797 MECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSA 856
+E LE++D + + +K++ S LR LI D S R A
Sbjct: 395 LEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHT-----------------RVA 436
Query: 857 ISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEI-PQDIGRASS 915
+ + + ++ L EV++++ + + LP I + L +LT LDLS C + ++ P SS
Sbjct: 437 FNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 916 LEILDISGNDFDSL 929
L++L++S N+F SL
Sbjct: 496 LQVLNMSHNNFFSL 509
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Query: 797 MECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSA 856
+E LE++D + + +K++ S LR LI D S R A
Sbjct: 419 LEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHT-----------------RVA 460
Query: 857 ISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEI-PQDIGRASS 915
+ + + ++ L EV++++ + + LP I + L +LT LDLS C + ++ P SS
Sbjct: 461 FNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519
Query: 916 LEILDISGNDFDSL 929
L++L++S N+F SL
Sbjct: 520 LQVLNMSHNNFFSL 533
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 728 NVIELDLKGTAIEEIPSSI-ECLTKLEELDLAYCRRLKSLPSSIC-KLKSLHLLCLYNCS 785
N+ L L G ++ +P+ + + LT L+EL L +L+SLP + KL +L L LY+ +
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLYLYH-N 143
Query: 786 NFEIFPE-ILEKMECLEYIDLESTAVKELPSSV-EQLKGLRELILEDCSELSKLPENL-G 842
+ P+ + +K+ L +DL++ ++ LP V ++L L++L L D ++L +P+ +
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND-NQLKSVPDGVFD 202
Query: 843 NLKSLKRLFAKRSAISKLPSSIAYLDEVI 871
L SL ++ + S I YL I
Sbjct: 203 RLTSLTHIWLLNNPWDCACSDILYLSRWI 231
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 27/157 (17%)
Query: 794 LEKMECLEYIDLESTAVKELPSSV-EQLKGLRELILEDCSELSKLPENL-GNLKSLKRLF 851
L+++ L Y+ L ++ LP+ V ++L L+EL+L + ++L LP+ + L +L L+
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLY 139
Query: 852 AKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDI- 910
+ + LP + L++LT+LDL + + +P+ +
Sbjct: 140 LYHNQLQSLPKGV----------------------FDKLTNLTRLDLDNNQLQSLPEGVF 177
Query: 911 GRASSLEILDISGNDFDSLPASI-KQLSRLRELYLSN 946
+ + L+ L ++ N S+P + +L+ L ++L N
Sbjct: 178 DKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLN 214
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 726 SGNVIELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSIC-KLKSLHLLCLYNC 784
SG I + KG + +P+ I EL+ +L+SLP + KL L L L
Sbjct: 8 SGTEIRCNSKG--LTSVPTGIPSSATRLELE---SNKLQSLPHGVFDKLTQLTKLSLS-- 60
Query: 785 SNFEIFPEILEKME----CLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPEN 840
SN F + + L+Y+DL V + S+ L+ L L + S L ++ E
Sbjct: 61 SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSE- 118
Query: 841 LGNLKSLKRLF-------AKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSL 893
SL+ L R A + + + ++ L EV++++ + + LP I + L +L
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNL 177
Query: 894 TKLDLSDCDVMEI-PQDIGRASSLEILDISGNDFDSL 929
T LDLS C + ++ P SSL++L++S N+F SL
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 27/209 (12%)
Query: 738 AIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKM 797
+E++P + T L LDL + + LK+LH L L N +I P +
Sbjct: 42 GLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99
Query: 798 ECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAI 857
LE + L +KELP + K L+EL + + +E++K+ +++ N L ++
Sbjct: 100 VKLERLYLSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFN--GLNQMIVVELGT 154
Query: 858 SKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLE 917
+ L SS IE +G G+ L+ + ++D ++ IPQ G SL
Sbjct: 155 NPLKSS------GIE---NGA--------FQGMKKLSYIRIADTNITTIPQ--GLPPSLT 195
Query: 918 ILDISGNDFDSL-PASIKQLSRLRELYLS 945
L + GN + AS+K L+ L +L LS
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLS 224
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 27/209 (12%)
Query: 738 AIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKM 797
+E++P + T L LDL + + LK+LH L L N +I P +
Sbjct: 42 GLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99
Query: 798 ECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAI 857
LE + L +KELP + K L+EL + + +E++K+ +++ N L ++
Sbjct: 100 VKLERLYLSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFN--GLNQMIVVELGT 154
Query: 858 SKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLE 917
+ L SS IE +G G+ L+ + ++D ++ IPQ G SL
Sbjct: 155 NPLKSS------GIE---NGA--------FQGMKKLSYIRIADTNITTIPQ--GLPPSLT 195
Query: 918 ILDISGNDFDSL-PASIKQLSRLRELYLS 945
L + GN + AS+K L+ L +L LS
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLS 224
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 896 LDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLP 954
LDLS+ + I +I + L L ++GN LPA IK LS LR L LS+ + L SLP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLP 286
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 893 LTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQS 952
LT+L L+ + E+P +I S+L +LD+S N SLPA + +L+ Y + +M+ +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTT 307
Query: 953 LP 954
LP
Sbjct: 308 LP 309
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 725 ISGNVIELD------LKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSI 770
IS N+ + D L G ++ E+P+ I+ L+ L LDL++ RL SLP+ +
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAEL 289
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 847 LKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEI 906
L RL+ +++++LP+ I L + L R LP L L D V +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 907 PQDIGRASSLEILDISGN 924
P + G +L+ L + GN
Sbjct: 309 PWEFGNLCNLQFLGVEGN 326
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 17/111 (15%)
Query: 844 LKSLKRLFAKRSAISKLPS-------SIAYLD--EVIELSFHGCRGLVLPPILSGLSSLT 894
L LK L+ + + I +PS S+ LD E+ LS+ + GLS+L
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY------ISEGAFEGLSNLR 188
Query: 895 KLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSL-PASIKQLSRLRELYL 944
L+L+ C++ EIP ++ L+ LD+SGN ++ P S + L L++L++
Sbjct: 189 YLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 802 YIDLESTAVKELPSSV-EQLKGLRELILEDCSELSKLPENLGN-LKSLKRLFAKRSAISK 859
Y+DLE+ ++K LP+ V ++L L +L L ++L LP + N L SL L + +
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 860 LPSSI-AYLDEVIELSFHGCRGLVLP-PILSGLSSLTKLDLSDCDVMEIPQDI-GRASSL 916
LP+ + L ++ EL+ + + LP + L+ L L L + +P + R +SL
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 917 EILDISGNDFDSLPASIKQLS 937
+ + + N +D I+ LS
Sbjct: 151 QYIWLHDNPWDCTCPGIRYLS 171
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 27/182 (14%)
Query: 732 LDLKGTAIEEIPS-SIECLTKLEELDLAYCRRLKSLPS-SICKLKSLHLLCLYNCSNFEI 789
L+L + IPS + E L+KL EL L ++S+PS + ++ SL L L E
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEY 186
Query: 790 FPE-ILEKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLK 848
E E + L+Y++L +K++P+ + L GL EL + P + L SLK
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245
Query: 849 RLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQ 908
+L+ S +S L+ GL+SL +L+L+ ++ +P
Sbjct: 246 KLWVMNSQVS----------------------LIERNAFDGLASLVELNLAHNNLSSLPH 283
Query: 909 DI 910
D+
Sbjct: 284 DL 285
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 37.4 bits (85), Expect = 0.046, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 60 LAAQCKYDVFVSFRGEDTRDNFTSHLVAALCRKKIKTFIDE-QLDRGDDISPALLDAIER 118
L + +D+F+S ED D F L L + + D+ L GD + ++ +
Sbjct: 15 LTSAPPHDIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGS 73
Query: 119 SKISVIIFSENYASSKWCLDELVKILECKNKNAQMVVPVFYHVDPSDVRKQTGSFGD 175
S+ +++ S ++ +W EL + + ++ ++P+++ V +V + + D
Sbjct: 74 SRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 761 RRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPSSV-EQ 819
+ L S+P+ I + +L LY+ ++ P + +++ L +DL++ + LP+ V ++
Sbjct: 27 KSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 84
Query: 820 LKGLRELILEDCSELSKLPEN-LGNLKSLKRLFAKRSAISKLPSSIAYLDEVI 871
L L +L L D ++L +P NLKSL ++ + S I YL I
Sbjct: 85 LTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 136
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 761 RRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPSSV-EQ 819
+ L S+P+ I + +L LY+ ++ P + +++ L +DL++ + LP+ V ++
Sbjct: 19 KSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76
Query: 820 LKGLRELILEDCSELSKLPEN-LGNLKSLKRLFAKRSAISKLPSSIAYLDEVI 871
L L +L L D ++L +P NLKSL ++ + S I YL I
Sbjct: 77 LTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128
>pdb|1TE6|A Chain A, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|1TE6|B Chain B, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|2AKM|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKM|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
Length = 439
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 51 SFMAASSSC-LAAQCKYDVFVSFRGEDTRDNFTSHLVAALCRKKIKT 96
S A +C LA + + V VS R +T D F + LV LC +IKT
Sbjct: 348 SVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|3UJE|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJE|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJF|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJF|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJR|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJR|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJS|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
pdb|3UJS|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
Length = 443
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 51 SFMAASSSC-LAAQCKYDVFVSFRGEDTRDNFTSHLVAALCRKKIKT 96
S A +C LA + + V VS R +T D F + LV LC +IKT
Sbjct: 348 SVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|3UCC|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCC|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCD|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
pdb|3UCD|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
Length = 439
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 51 SFMAASSSC-LAAQCKYDVFVSFRGEDTRDNFTSHLVAALCRKKIKT 96
S A +C LA + + V VS R +T D F + LV LC +IKT
Sbjct: 348 SVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 44 GNKVLKISFMAASSSCLAAQCKYDVFVSFRGEDTRDNFTSHLVAALCRKKIKTFI---DE 100
G + L M + L ++ F+S+ D+ + L+ L ++ I +
Sbjct: 14 GTENLYFQSMKTTQEQLKRNVRFHAFISYSEHDSLW-VKNELIPNLEKEDGSILICLYES 72
Query: 101 QLDRGDDISPALLDAIERSKISVIIFSENYASSKWCLDEL 140
D G IS ++ IE+S S+ + S N+ ++WC E
Sbjct: 73 YFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 33/163 (20%)
Query: 828 LEDCSELSKL-PENLGNL-------KSLKRLFAKRSAISKL-------PSSIAYLDE--- 869
LE C EL +L PEN L ++L L ++ + P AYLD+
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427
Query: 870 -------VIELSFHGCRGLVLP----PILSGLSSL---TKLDLSDCDVMEIPQDIGRASS 915
V+++ + R L L +L L L T LDLS + +P +
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC 487
Query: 916 LEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPELPL 958
LE+L S N +++ + L RL+EL L N + QS PL
Sbjct: 488 LEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPL 529
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 33/163 (20%)
Query: 828 LEDCSELSKL-PENLGNL-------KSLKRLFAKRSAISKL-------PSSIAYLDE--- 869
LE C EL +L PEN L ++L L ++ + P AYLD+
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427
Query: 870 -------VIELSFHGCRGLVLP----PILSGLSSL---TKLDLSDCDVMEIPQDIGRASS 915
V+++ + R L L +L L L T LDLS + +P +
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC 487
Query: 916 LEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPELPL 958
LE+L S N +++ + L RL+EL L N + QS PL
Sbjct: 488 LEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPL 529
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 890 LSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLP-ASIKQLSRLRELYLSNCS 948
L L LDLS + +P +L +LD+S N SLP +++ L L+ELYL +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-N 134
Query: 949 MLQSLP 954
L++LP
Sbjct: 135 ELKTLP 140
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 890 LSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLP-ASIKQLSRLRELYLSNCS 948
L L LDLS + +P +L +LD+S N SLP +++ L L+ELYL +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-N 134
Query: 949 MLQSLP 954
L++LP
Sbjct: 135 ELKTLP 140
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 36/187 (19%)
Query: 787 FEIFPEILEKMECLEYIDLESTAVKELPSSVEQLKGLREL----ILEDCSELSKLPENLG 842
+ +F E+ KM + PSS L + + + + CS L +L +
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384
Query: 843 NLKSLKRLFAKRSAISKLPSSIAYLDE---------------------VIELSFHGCRGL 881
LK F K + ++K SS+ LD V+ LS + G
Sbjct: 385 QRNGLKNFF-KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443
Query: 882 V---LPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASI-KQLS 937
V LPP + LDL + +M IP+D+ +L+ L+++ N S+P + +L+
Sbjct: 444 VFRCLPP------KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497
Query: 938 RLRELYL 944
L+ ++L
Sbjct: 498 SLQYIWL 504
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 890 LSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLP-ASIKQLSRLRELYLSNCS 948
L L LDLS + +P +L +LD+S N SLP +++ L L+ELYL +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-N 134
Query: 949 MLQSLP 954
L++LP
Sbjct: 135 ELKTLP 140
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.3 bits (77), Expect = 0.44, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 890 LSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLP-ASIKQLSRLRELYLSNCS 948
L L LDLS + +P +L +LD+S N SLP +++ L L+ELYL +
Sbjct: 77 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-N 135
Query: 949 MLQSLP 954
L++LP
Sbjct: 136 ELKTLP 141
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.3 bits (77), Expect = 0.44, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 890 LSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLP-ASIKQLSRLRELYLSNCS 948
L L LDLS + +P +L +LD+S N SLP +++ L L+ELYL +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-N 134
Query: 949 MLQSLP 954
L++LP
Sbjct: 135 ELKTLP 140
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 819 QLKGLRELILE--DCSELSKLPENLGNLKSLKRLFAKRSAIS--KLPSSIAYLDEVIELS 874
L L LIL+ ELSK+ E +KSL++L ++++S + ++ + LS
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL--LS 403
Query: 875 FHGCRGLVLPPILSGLSSLTK-LDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASI 933
+ ++ I L K LDL + IP+ + + +L+ L+++ N S+P I
Sbjct: 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
Query: 934 -KQLSRLRELYL 944
+L+ L++++L
Sbjct: 464 FDRLTSLQKIWL 475
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 28/109 (25%)
Query: 744 SSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFE--------IFPEI-- 793
S+ C T+++ELDL L LPS I + SL L L N ++F+ FP +
Sbjct: 271 STFRCFTRVQELDLT-AAHLNGLPSGIEGMNSLKKLVL-NANSFDQLCQINAASFPSLRD 328
Query: 794 ----------------LEKMECLEYIDLESTAVKELPSSVEQLKGLREL 826
LEK+E L+ +DL + ++ QLK LR L
Sbjct: 329 LYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHL 377
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 761 RRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPSSV-EQ 819
+ L S+P+ I + +L LY+ ++ P + +++ L +DL++ + LP+ V ++
Sbjct: 19 KSLASVPTGIPT--TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76
Query: 820 LKGLRELILEDCSELSKLPEN-LGNLKSLKRLFAKRSAISKLPSSIAYLDEVI 871
L L +L L D ++L +P NL+SL ++ + S I YL I
Sbjct: 77 LTQLTQLSLND-NQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWI 128
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 890 LSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLP-ASIKQLSRLRELYLSNCS 948
L L LDLS + +P +L +LD+S N SLP +++ L L+ELYL +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-N 134
Query: 949 MLQSLP 954
L++LP
Sbjct: 135 ELKTLP 140
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 890 LSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLP-ASIKQLSRLRELYLSNCS 948
L L LDLS + +P +L +LD+S N SLP +++ L L+ELYL +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-N 134
Query: 949 MLQSLP 954
L++LP
Sbjct: 135 ELKTLP 140
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 98/266 (36%), Gaps = 69/266 (25%)
Query: 698 CFPQNIHFRTLIEIDFSYCINLTEFPEISGNVIELDLKGTAIEEIPSSIECLTKLEELDL 757
C P H TL+ D NLT P + + L++ G + +P L +L
Sbjct: 58 CLPA--HITTLVIPDN----NLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSN 111
Query: 758 AYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPSSV 817
L +LPS +CKL IF L + L ++EL S
Sbjct: 112 PLTH-LPALPSGLCKLW--------------IFGNQLTSLPVL------PPGLQELSVSD 150
Query: 818 EQLKGLRELILEDC------SELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVI 871
QL L L E C ++L+ LP L+ L + +++ LPS E+
Sbjct: 151 NQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPS------ELY 204
Query: 872 ELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPA 931
+L + R LP + SGL L +SGN SLP
Sbjct: 205 KLWAYNNRLTSLPALPSGLKELI--------------------------VSGNRLTSLPV 238
Query: 932 SIKQLSRLRELYLSNCSMLQSLPELP 957
S L+EL +S + L SLP LP
Sbjct: 239 LP---SELKELMVSG-NRLTSLPMLP 260
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 74/155 (47%), Gaps = 27/155 (17%)
Query: 794 LEKMECLEYIDLESTAVKELPSSV-EQLKGLRELILEDCSELSKLPENL-GNLKSLKRLF 851
L+++ L Y+ L ++ LP+ V ++L L+EL+L + ++L LP+ + L +L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLN 139
Query: 852 AKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDI- 910
+ + LP + L++LT+LDLS + +P+ +
Sbjct: 140 LAHNQLQSLPKGV----------------------FDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 911 GRASSLEILDISGNDFDSLPASI-KQLSRLRELYL 944
+ + L+ L + N S+P + +L+ L+ ++L
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 890 LSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLP-ASIKQLSRLRELYLSNCS 948
L L LDLS + +P +L +LD+S N SLP +++ L L+ELYL +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-N 134
Query: 949 MLQSLP 954
L++LP
Sbjct: 135 ELKTLP 140
>pdb|4FD0|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Baccac_03700) From Bacteroides Caccae Atcc 43185 At
2.07 A Resolution
Length = 404
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 832 SELSKLPENLGNL-KSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGL 890
+ L +L EN+ ++LK+ R+ ++KLP+S + G ++LP L +
Sbjct: 169 TTLEQLEENIFYYCRNLKKADLSRTKLTKLPAST--------FVYAGVEEVLLPATLKEI 220
Query: 891 SSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELY 943
+ L S +EIP+++ R LE SG LP + +++ R Y
Sbjct: 221 GAQAFLKTSQLKTIEIPENV-RTIGLEAFRESGITTVKLPNGVTTIAQ-RAFY 271
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 17/166 (10%)
Query: 737 TAIEEI--PSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEI-FPEI 793
+ ++E+ P+++E +LEE YCR LK S KL L E+ P
Sbjct: 160 STVQEVVFPTTLE---QLEENIFYYCRNLKKADLSRTKLTKLPASTFVYAGVEEVLLPAT 216
Query: 794 LEKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAK 853
L+++ ++ E+P +V + GL E E KLP + + +R F
Sbjct: 217 LKEIGAQAFLKTSQLKTIEIPENVRTI-GL-EAFRESGITTVKLPNGVTTIA--QRAFYY 272
Query: 854 RSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLS 899
++++ + ++E E H P L G LT+ D+S
Sbjct: 273 CPELTEVTTYGTVINENPEAXIH-------PYCLEGCPKLTRFDIS 311
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 890 LSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLP-ASIKQLSRLRELYLSNCS 948
L L LDLS + +P +L +LD+S N SLP +++ L L+ELYL +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-N 134
Query: 949 MLQSLP 954
L++LP
Sbjct: 135 ELKTLP 140
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 60 LAAQCKYDVFVSFRGEDTRDNFTSHLVAALCRKKIKTFIDEQ-LDRGDDISPALLDAIER 118
L ++ F+S+ G D+ + L+ L ++ + + E+ G I ++ IE+
Sbjct: 7 LQRNLQFHAFISYSGHDSFW-VKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEK 65
Query: 119 SKISVIIFSENYASSKWCLDEL 140
S S+ + S N+ S+WC EL
Sbjct: 66 SYKSIFVLSPNFVQSEWCHYEL 87
>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
Length = 434
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 38 KNLCCFGNKVLKISFMAAS-SSCLAAQCK-YDVFVSFRGEDTRDNFTSHLVAALCRKKIK 95
K+ C KV +I + S +C AQ + V VS R +T D F + LV LC +IK
Sbjct: 335 KSCNCLLLKVNQIGSVTESLQACKLAQANGWGVMVSHRSGETEDTFIADLVVGLCTGQIK 394
Query: 96 T 96
T
Sbjct: 395 T 395
>pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1
pdb|3B97|B Chain B, Crystal Structure Of Human Enolase 1
pdb|3B97|C Chain C, Crystal Structure Of Human Enolase 1
pdb|3B97|D Chain D, Crystal Structure Of Human Enolase 1
Length = 433
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 38 KNLCCFGNKVLKISFMAAS-SSCLAAQCK-YDVFVSFRGEDTRDNFTSHLVAALCRKKIK 95
K+ C KV +I + S +C AQ + V VS R +T D F + LV LC +IK
Sbjct: 334 KSCNCLLLKVNQIGSVTESLQACKLAQANGWGVMVSHRSGETEDTFIADLVVGLCTGQIK 393
Query: 96 T 96
T
Sbjct: 394 T 394
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 890 LSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLP-ASIKQLSRLRELYLSNCS 948
L L LDLS + +P +L +LD+S N SLP +++ L L+ELYL +
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-N 134
Query: 949 MLQSLP 954
L++LP
Sbjct: 135 ELKTLP 140
>pdb|2XSX|A Chain A, Crystal Structure Of Human Beta Enolase Enob
pdb|2XSX|B Chain B, Crystal Structure Of Human Beta Enolase Enob
Length = 435
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 60 LAAQCKYDVFVSFRGEDTRDNFTSHLVAALCRKKIKT 96
LA + V VS R +T D F + LV LC +IKT
Sbjct: 360 LAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 396
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 47/232 (20%)
Query: 743 PSSIECLTKLEELDLAYCRRLK--------SLPSSICKLKSLHLLCLYNCSNFEIFPEIL 794
PS + +++L +++ RRL L + L+ + + + N F +
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330
Query: 795 EKMECLEYIDLESTAVKELPSSVEQLKG----LRELILED--CSELSKLPENLGNLKSLK 848
+ ++ LE++DL + E KG L+ L+L + K E L LK+L
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390
Query: 849 RLFAKRSAISKLPSSIAYLDEV--IELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEI 906
L R+ +P S + +++ + LS G R + C I
Sbjct: 391 SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV-----------------KTC----I 429
Query: 907 PQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPELPL 958
PQ +LE+LD+S N+ DS L RL+ELY+S + L++LP+ L
Sbjct: 430 PQ------TLEVLDVSNNNLDSFSLF---LPRLQELYISR-NKLKTLPDASL 471
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 47/232 (20%)
Query: 743 PSSIECLTKLEELDLAYCRRLK--------SLPSSICKLKSLHLLCLYNCSNFEIFPEIL 794
PS + +++L +++ RRL L + L+ + + + N F +
Sbjct: 297 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 356
Query: 795 EKMECLEYIDLESTAVKELPSSVEQLKG----LRELILED--CSELSKLPENLGNLKSLK 848
+ ++ LE++DL + E KG L+ L+L + K E L LK+L
Sbjct: 357 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 416
Query: 849 RLFAKRSAISKLPSSIAYLDEV--IELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEI 906
L R+ +P S + +++ + LS G R + C I
Sbjct: 417 SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV-----------------KTC----I 455
Query: 907 PQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPELPL 958
PQ +LE+LD+S N+ DS L RL+ELY+S + L++LP+ L
Sbjct: 456 PQ------TLEVLDVSNNNLDSFSLF---LPRLQELYISR-NKLKTLPDASL 497
>pdb|3BZ4|A Chain A, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|C Chain C, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|E Chain E, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|G Chain G, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3C5S|A Chain A, Crystal Structure Of Monoclonal Fab F22-4 Specific For
Shigella Flexneri 2a O-Ag
pdb|3C5S|C Chain C, Crystal Structure Of Monoclonal Fab F22-4 Specific For
Shigella Flexneri 2a O-Ag
pdb|3C6S|A Chain A, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|C Chain C, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|E Chain E, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|G Chain G, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3GGW|A Chain A, Crystal Structure Of Fab F22-4 In Complex With A
Carbohydrate-Mimetic Peptide
pdb|3GGW|C Chain C, Crystal Structure Of Fab F22-4 In Complex With A
Carbohydrate-Mimetic Peptide
Length = 219
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 1035 ILHM-AIASLRLFSEKEFKKPHGISIFLP--GSGIPDWFSNQGSGSSITIQLSQHCCSTN 1091
+LH I L + +K + PH + L SG+PD FS+ GSG+ T+++S+
Sbjct: 29 LLHSDGITYLYWYLQKPGQSPHLLIYHLSNLASGVPDRFSSSGSGTDFTLRISR--VEAE 86
Query: 1092 LIGFSVCA-VIEYEDDFPNGGG 1112
+G CA +E F GGG
Sbjct: 87 DVGIYYCAHNVELPRTF--GGG 106
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 40/220 (18%)
Query: 731 ELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIF 790
E+D +G +++ +PS I T E+LD L+S L L + +
Sbjct: 18 EVDCQGKSLDSVPSGIPADT--EKLD----------------LQSTGLATLSDAT----- 54
Query: 791 PEILEKMECLEYIDLESTAVKELPSSV-EQLKGLRELILEDCSELSKLPENL-GNLKSLK 848
+ L +++L+ ++ L + V + L L L L + ++L+ LP + +L L
Sbjct: 55 ---FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHLTQLD 110
Query: 849 RLFAKRSAISKLPSSI-AYLDEVIELSFHGCRGLVLPP-ILSGLSSLTKLDLSDCDVMEI 906
+L+ + + LPS + L ++ EL + + +P L++L L LS + +
Sbjct: 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Query: 907 PQD-IGRASSLEILDISGNDFDSLPASIKQLSRLRELYLS 945
P R L+ + + GN FD SR LYLS
Sbjct: 171 PHGAFDRLGKLQTITLFGNQFDC--------SRCETLYLS 202
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 49/231 (21%)
Query: 731 ELDLKGTAIEEIPSSIEC----------------------LTKLEELDLAYCRRLKSLPS 768
E+D +G +++ +PS I LTKL L+L Y +L++L +
Sbjct: 18 EVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSA 76
Query: 769 SIC-KLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPSSV-EQLKGLREL 826
+ L L L L N + + + + L+ + L +K LPS V ++L L+EL
Sbjct: 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 827 ILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPI 886
L + ++L +P F K + + L S L V +F
Sbjct: 137 RL-NTNQLQSIPAG---------AFDKLTNLQTLSLSTNQLQSVPHGAFD---------R 177
Query: 887 LSGLSSLT----KLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASI 933
L L ++T + D S C+++ + Q I R +S ++ D +G + P +
Sbjct: 178 LGKLQTITLFGNQFDCSRCEILYLSQWI-RENSNKVKDGTGQNLHESPDGV 227
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 21/124 (16%)
Query: 809 AVKELPSSVEQLKGLRELILEDC-SELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYL 867
++ ELP+S+E L C + LS LPE +LK L + + + +LP+ + Y+
Sbjct: 94 SLPELPASLEYLDA--------CDNRLSTLPELPASLKHLDVDNNQLTXLPELPALLEYI 145
Query: 868 DEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFD 927
+ + LP + + L L+ + + E+P+ SLE LD+S N +
Sbjct: 146 NA------DNNQLTXLPELPTSLEVLSVRNNQLTFLPELPE------SLEALDVSTNLLE 193
Query: 928 SLPA 931
SLPA
Sbjct: 194 SLPA 197
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 890 LSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNC-S 948
++ ++L L+ ++ +P ++ + +L+I+ N SLP L YL C +
Sbjct: 58 INQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPELPASLE-----YLDACDN 110
Query: 949 MLQSLPELPLRVKLLDASNCK 969
L +LPELP +K LD N +
Sbjct: 111 RLSTLPELPASLKHLDVDNNQ 131
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 695 SLRCFPQNIHFR-TLIEIDFSYCINLTEFPEISGNVIELDLKGTAIEEIPSSIECLTKLE 753
+L P N+ + T++EI + I+L E P + D + + + E+P+S++ L
Sbjct: 70 NLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHL---- 125
Query: 754 ELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEI--FPEILEKMECLEYIDLESTAVK 811
++D L LP+ LL N N ++ PE+ +E L + + T +
Sbjct: 126 DVDNNQLTXLPELPA---------LLEYINADNNQLTXLPELPTSLEVLSVRNNQLTFLP 176
Query: 812 ELPSSVEQL 820
ELP S+E L
Sbjct: 177 ELPESLEAL 185
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 66 YDVFVSFRGEDTRDNFTSHLVAALCRKKIKTF--------IDEQLDRGDDISPALLDAIE 117
YD FVS+ D ++ V L ++++ F G I ++D+IE
Sbjct: 6 YDAFVSYSERD------AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIE 59
Query: 118 RSKISVIIFSENYASSKWCLDEL 140
+S +V + SEN+ S+W EL
Sbjct: 60 KSHKTVFVLSENFVKSEWXKYEL 82
>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|B Chain B, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|C Chain C, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|D Chain D, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
pdb|1O77|E Chain E, Crystal Structure Of The C713s Mutant Of The Tir Domain Of
Human Tlr2
Length = 146
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 66 YDVFVSFRGEDTR----------DNFTSHLVAALCRKKIKTFIDEQLDRGDDISPALLDA 115
YD FVS+ D +NF LC K + FI G I ++D+
Sbjct: 3 YDAFVSYSERDAYWVENLMVQELENFNPPF--KLCLHK-RDFIP-----GKWIIDNIIDS 54
Query: 116 IERSKISVIIFSENYASSKWCLDEL 140
IE+S +V + SEN+ S+W EL
Sbjct: 55 IEKSHKTVFVLSENFVKSEWSKYEL 79
>pdb|1WT5|C Chain C, The Crystal Structure Of A Humanized Antibody Fv 528
pdb|1WT5|D Chain D, The Crystal Structure Of A Humanized Antibody Fv 528
Length = 122
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 25/67 (37%)
Query: 1064 SGIPDWFSNQGSGSSITIQLSQHCCSTNLIGFSVCAVIEYEDDFPNGGGYFNVGCSYCFE 1123
SG+PD FS GSG+ T+++S+ +E ED VG YCF+
Sbjct: 61 SGVPDRFSGSGSGTDFTLKISR---------------VEAED----------VGVYYCFQ 95
Query: 1124 ITALSET 1130
+ + T
Sbjct: 96 GSHIPPT 102
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin, Cys To Ala Mutant
Length = 235
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 144 LECKNKNAQMVVPVFYHVDPSDVRKQTGSFGDAFVKHEKQFKGIPEKVQKWRVVLTEASN 203
LE + Q+ VP YH P DV K+ G A ++ EKQ + E+++ + ++T+
Sbjct: 78 LEGAVQAGQLKVPPGYH--PLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQM 135
Query: 204 LSG 206
+G
Sbjct: 136 EAG 138
>pdb|3QRG|L Chain L, Crystal Structure Of Antirsvf Fab B21m
Length = 218
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1062 PGSGIPDWFSNQGSGSSITIQLS 1084
P SG+PD FS GSG+ T+ +S
Sbjct: 58 PESGVPDRFSGSGSGTDFTLTIS 80
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 800 LEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISK 859
L+ + L A+K + SS + LR L + D S + N L+ L++L I
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-----EILD 510
Query: 860 LPSSIAYLDEVIELSFHGCRGLVLPPI--LSGLSSLTKLDLSDCDVMEIPQDIGR-ASSL 916
L + + L H G PI L GLS L L+L EIP ++ + L
Sbjct: 511 LQH-----NNLARLWKHANPG---GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562
Query: 917 EILDISGNDFDSLPASI 933
+I+D+ N+ ++LPAS+
Sbjct: 563 KIIDLGLNNLNTLPASV 579
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 793 ILEKMECLEYIDLESTAVKELPSSV-EQLKGLRELILEDCSELSKLPENLGNLKSLKRLF 851
+ + + L +DL + + LPS+V ++L L+EL + C++L++LP + L L L
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLA 141
Query: 852 AKRSAISKLP 861
++ + +P
Sbjct: 142 LDQNQLKSIP 151
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 800 LEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISK 859
L+ + L A+K + SS + LR L + D S + N L+ L++L I
Sbjct: 461 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-----EILD 515
Query: 860 LPSSIAYLDEVIELSFHGCRGLVLPPI--LSGLSSLTKLDLSDCDVMEIPQDIGR-ASSL 916
L + + L H G PI L GLS L L+L EIP ++ + L
Sbjct: 516 LQH-----NNLARLWKHANPG---GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 567
Query: 917 EILDISGNDFDSLPASI 933
+I+D+ N+ ++LPAS+
Sbjct: 568 KIIDLGLNNLNTLPASV 584
>pdb|1UZ6|E Chain E, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|L Chain L, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|M Chain M, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|V Chain V, Anti-Lewis X Fab Fragment Uncomplexed
Length = 218
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 8/38 (21%)
Query: 1063 GSGIPDWFSNQGSGSSITIQLSQ--------HCCSTNL 1092
SG+PD FS+ GSG+ T+++S+ + C+ NL
Sbjct: 60 ASGVPDRFSSSGSGTDFTLRISRVEAEDVGVYYCAQNL 97
>pdb|4DTG|L Chain L, Hemostatic Effect Of A Monoclonal Antibody Mab 2021 Blocking
The Interaction Between Fxa And Tfpi In A Rabbit
Hemophilia Model
Length = 219
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 25/67 (37%)
Query: 1064 SGIPDWFSNQGSGSSITIQLSQHCCSTNLIGFSVCAVIEYEDDFPNGGGYFNVGCSYCFE 1123
SG+PD FS GSG+ T+++S+ +E ED VG YC +
Sbjct: 61 SGVPDRFSGSGSGTDFTLKISR---------------VEAED----------VGVYYCLQ 95
Query: 1124 ITALSET 1130
T +T
Sbjct: 96 ATHFPQT 102
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 800 LEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISK 859
L+ + L A+K + SS + LR L + D S + N L+ L++L I
Sbjct: 466 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-----EILD 520
Query: 860 LPSSIAYLDEVIELSFHGCRGLVLPPI--LSGLSSLTKLDLSDCDVMEIPQDIGR-ASSL 916
L + + L H G PI L GLS L L+L EIP ++ + L
Sbjct: 521 LQH-----NNLARLWKHANPG---GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 572
Query: 917 EILDISGNDFDSLPASI 933
+I+D+ N+ ++LPAS+
Sbjct: 573 KIIDLGLNNLNTLPASV 589
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 66 YDVFVSFRGEDTRDNFTSHLVAALCRKKIKTF--------IDEQLDRGDDISPALLDAIE 117
YD FVS+ D ++ V L ++++ F G I ++D+IE
Sbjct: 6 YDAFVSYSERD------AYWVENLXVQELENFNPPFKLXLHKRDFIPGKWIIDNIIDSIE 59
Query: 118 RSKISVIIFSENYASSKWCLDEL 140
+S +V + SEN+ S+W EL
Sbjct: 60 KSHKTVFVLSENFVKSEWXKYEL 82
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 99/252 (39%), Gaps = 41/252 (16%)
Query: 731 ELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSL-HLLCLYNCSNFEI 789
ELDL T + E+PS + L+ L++L L+ + S SL HL N E+
Sbjct: 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341
Query: 790 FPEILEKMECLEYIDLESTAVKELPSSVEQLKGLREL----------------ILEDCSE 833
LE +E L +DL ++ QL+ L L ++C +
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 834 LSKLPENLGNL--KSLKRLFAKRSAISKLPSSIAYLDEVIELSFHG--------CRGLVL 883
L L L K + F + L S + LD E F G +G
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 884 PP-------ILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEIL---DISGNDFDSLPASI 933
P L L L L LS CD+ I Q +SL+++ D+S N S +SI
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH--AFTSLKMMNHVDLSHNRLTS--SSI 517
Query: 934 KQLSRLRELYLS 945
+ LS L+ +YL+
Sbjct: 518 EALSHLKGIYLN 529
>pdb|3AAZ|B Chain B, Crystal Structure Of The Humanized Recombinant Fab Fragment
Of A Murine; Antibody
pdb|3AAZ|L Chain L, Crystal Structure Of The Humanized Recombinant Fab Fragment
Of A Murine; Antibody
Length = 229
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 25/62 (40%)
Query: 1064 SGIPDWFSNQGSGSSITIQLSQHCCSTNLIGFSVCAVIEYEDDFPNGGGYFNVGCSYCFE 1123
SG+PD FS GSG+ T+++S+ +E ED VG YCF+
Sbjct: 61 SGVPDRFSGSGSGTDFTLKISR---------------VEAED----------VGVYYCFQ 95
Query: 1124 IT 1125
+
Sbjct: 96 AS 97
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 518 NVLVDKSLVALSCNNKLQIHDLLQEFGREIVRQQSVKEPGKRSRLWYYEDVYQVLKKNKG 577
++L V+L CN H L+ +F + +RQ + R L + + Q LK+ +
Sbjct: 203 DLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGR- 261
Query: 578 TESIEGMFLDVSQIEDLHLTSRAFVKMPNL 607
I G LDV + E PNL
Sbjct: 262 ---IRGAALDVHESEPFSFAQGPLKDAPNL 288
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 878 CRGLVLPPILSGLSSLTK-LDLSDCDVMEIP-QDIGRASSLEILDISGNDFDSLPASI-K 934
C L I S + + TK LDL + +P + R + L +L ++ N +LPA I K
Sbjct: 23 CSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82
Query: 935 QLSRLRELYLSNCSMLQSLP 954
+L L L++++ + LQ+LP
Sbjct: 83 ELKNLETLWVTD-NKLQALP 101
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 21/81 (25%)
Query: 869 EVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDS 928
E++ ++F G L + +LSG SL KL++ DC + +
Sbjct: 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD---------------------KA 497
Query: 929 LPASIKQLSRLRELYLSNCSM 949
L A+ +L +R L++S+CS+
Sbjct: 498 LLANASKLETMRSLWMSSCSV 518
>pdb|2IWC|A Chain A, Benzylpenicilloyl-Acylated Mecr1 Extracellular Antibiotic-
Sensor Domain
Length = 255
Score = 30.0 bits (66), Expect = 7.7, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 56/183 (30%)
Query: 475 ISYNELKQEEKSIFLDIACFFKGDDKDFMT--------RIQDDPESVH-YGLN------- 518
+SY +L Q +A +FKG D F+ I ++PES Y N
Sbjct: 16 VSYKKLNQ--------LAPYFKGFDGSFVLYNEREQAYSIYNEPESKQRYSPNXTYKIYL 67
Query: 519 --VLVDKSLVALSCNNKLQIHDLLQEFGREIVRQQSVKEPGKRSRLWYYEDVYQVLKKNK 576
+ D++L LS N+ Q D Q +E + Q++ K S WYYE++ + L++++
Sbjct: 68 ALMAFDQNL--LSLNHTEQQWDKHQYPFKEWNQDQNLNSSMKYSVNWYYENLNKHLRQDE 125
Query: 577 ----------GTESIEG-------MFLDVSQIE-----------DLHLTSRAFVKMPNLR 608
G E I G L +S IE ++H ++A K+ N
Sbjct: 126 VKSYLDLIEYGNEEISGNENYWNESSLKISAIEQVNLLKNMKQHNMHFDNKAIEKVENSM 185
Query: 609 LLK 611
LK
Sbjct: 186 TLK 188
>pdb|1MJ8|L Chain L, High Resolution Crystal Structure Of The Fab Fragment Of The
Esterolytic Antibody Ms6-126
Length = 219
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 1063 GSGIPDWFSNQGSGSSITIQLSQ 1085
SG+PD FS GSG++ T+++S+
Sbjct: 60 ASGVPDRFSGSGSGTAFTLRISR 82
>pdb|3VI3|L Chain L, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|E Chain E, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|L Chain L, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|E Chain E, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 219
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 1063 GSGIPDWFSNQGSGSSITIQLSQ 1085
SG+PD FS GSG++ T+++S+
Sbjct: 60 ASGVPDRFSGSGSGTAFTLRISR 82
>pdb|2IWB|A Chain A, Mecr1 Unbound Extracellular Antibiotic-Sensor Domain
Length = 246
Score = 30.0 bits (66), Expect = 9.3, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 56/183 (30%)
Query: 475 ISYNELKQEEKSIFLDIACFFKGDDKDFMT--------RIQDDPESVH-YGLN------- 518
+SY +L Q +A +FKG D F+ I ++PES Y N
Sbjct: 7 VSYKKLNQ--------LAPYFKGFDGSFVLYNEREQAYSIYNEPESKQRYSPNSTYKIYL 58
Query: 519 --VLVDKSLVALSCNNKLQIHDLLQEFGREIVRQQSVKEPGKRSRLWYYEDVYQVLKKNK 576
+ D++L LS N+ Q D Q +E + Q++ K S WYYE++ + L++++
Sbjct: 59 ALMAFDQNL--LSLNHTEQQWDKHQYPFKEWNQDQNLNSSMKYSVNWYYENLNKHLRQDE 116
Query: 577 ----------GTESIEG-------MFLDVSQIE-----------DLHLTSRAFVKMPNLR 608
G E I G L +S IE ++H ++A K+ N
Sbjct: 117 VKSYLDLIEYGNEEISGNENYWNESSLKISAIEQVNLLKNMKQHNMHFDNKAIEKVENSM 176
Query: 609 LLK 611
LK
Sbjct: 177 TLK 179
>pdb|2IWD|A Chain A, Oxacilloyl-Acylated Mecr1 Extracellular Antibiotic-Sensor
Domain
Length = 246
Score = 30.0 bits (66), Expect = 9.3, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 56/183 (30%)
Query: 475 ISYNELKQEEKSIFLDIACFFKGDDKDFMT--------RIQDDPESVH-YGLN------- 518
+SY +L Q +A +FKG D F+ I ++PES Y N
Sbjct: 7 VSYKKLNQ--------LAPYFKGFDGSFVLYNEREQAYSIYNEPESKQRYSPNXTYKIYL 58
Query: 519 --VLVDKSLVALSCNNKLQIHDLLQEFGREIVRQQSVKEPGKRSRLWYYEDVYQVLKKNK 576
+ D++L LS N+ Q D Q +E + Q++ K S WYYE++ + L++++
Sbjct: 59 ALMAFDQNL--LSLNHTEQQWDKHQYPFKEWNQDQNLNSSMKYSVNWYYENLNKHLRQDE 116
Query: 577 ----------GTESIEG-------MFLDVSQIE-----------DLHLTSRAFVKMPNLR 608
G E I G L +S IE ++H ++A K+ N
Sbjct: 117 VKSYLDLIEYGNEEISGNENYWNESSLKISAIEQVNLLKNMKQHNMHFDNKAIEKVENSM 176
Query: 609 LLK 611
LK
Sbjct: 177 TLK 179
>pdb|1MH5|A Chain A, The Structure Of The Complex Of The Fab Fragment Of The
Esterolytic Antibody Ms6-164 And A Transition-State
Analog
pdb|1MH5|L Chain L, The Structure Of The Complex Of The Fab Fragment Of The
Esterolytic Antibody Ms6-164 And A Transition-State
Analog
Length = 219
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 1063 GSGIPDWFSNQGSGSSITIQLSQ 1085
SG+PD FS GSG++ T+++S+
Sbjct: 60 ASGVPDRFSGSGSGTAFTLRISR 82
>pdb|1MJJ|A Chain A, High Resolution Crystal Structure Of The Complex Of The Fab
Fragment Of Esterolytic Antibody Ms6-12 And A Transition-
State Analog
pdb|1MJJ|L Chain L, High Resolution Crystal Structure Of The Complex Of The Fab
Fragment Of Esterolytic Antibody Ms6-12 And A Transition-
State Analog
pdb|1MJU|L Chain L, 1.22 Angstrom Resolution Crystal Structure Of The Fab
Fragment Of Esterolytic Antibody Ms6-12
Length = 219
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 1063 GSGIPDWFSNQGSGSSITIQLSQ 1085
SG+PD FS GSG++ T+++S+
Sbjct: 60 ASGVPDRFSGSGSGTAFTLRISR 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,396,236
Number of Sequences: 62578
Number of extensions: 1414893
Number of successful extensions: 4002
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 3822
Number of HSP's gapped (non-prelim): 196
length of query: 1223
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1113
effective length of database: 8,089,757
effective search space: 9003899541
effective search space used: 9003899541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)