Query 000922
Match_columns 1223
No_of_seqs 1031 out of 6474
Neff 8.9
Searched_HMMs 46136
Date Tue Apr 2 00:47:26 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 6E-150 1E-154 1475.0 93.9 1075 53-1220 1-1112(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 4E-58 8.6E-63 571.5 31.2 632 243-976 161-847 (889)
3 PLN03194 putative disease resi 100.0 2.9E-43 6.3E-48 346.5 15.8 155 59-230 20-177 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 3.3E-35 7.1E-40 333.3 14.6 262 245-510 1-279 (287)
5 PLN00113 leucine-rich repeat r 100.0 3.3E-31 7.2E-36 350.9 27.3 408 554-969 42-486 (968)
6 PLN00113 leucine-rich repeat r 100.0 3.5E-29 7.6E-34 331.7 24.6 378 586-975 98-516 (968)
7 KOG0444 Cytoskeletal regulator 100.0 2.1E-30 4.5E-35 288.7 -4.7 330 639-972 33-376 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 1.6E-29 3.4E-34 281.7 -4.6 341 598-955 25-380 (1255)
9 KOG4194 Membrane glycoprotein 99.9 4.1E-27 9E-32 262.0 5.3 316 636-954 76-408 (873)
10 KOG4194 Membrane glycoprotein 99.9 3E-26 6.6E-31 255.1 5.3 372 583-965 54-446 (873)
11 KOG0472 Leucine-rich repeat pr 99.9 3.9E-27 8.5E-32 251.9 -5.8 213 639-857 69-309 (565)
12 KOG0472 Leucine-rich repeat pr 99.9 5.3E-27 1.1E-31 250.9 -7.9 325 639-969 115-539 (565)
13 PLN03210 Resistant to P. syrin 99.9 4.4E-22 9.5E-27 263.7 24.4 334 678-1023 553-909 (1153)
14 KOG0618 Serine/threonine phosp 99.9 7.4E-24 1.6E-28 249.1 -3.5 218 751-971 242-489 (1081)
15 PRK15387 E3 ubiquitin-protein 99.8 1.5E-19 3.2E-24 221.7 16.9 262 638-954 201-462 (788)
16 PF01582 TIR: TIR domain; Int 99.8 9.1E-21 2E-25 189.2 3.9 132 68-199 1-140 (141)
17 PRK15387 E3 ubiquitin-protein 99.8 5.3E-19 1.2E-23 216.8 17.8 251 662-969 203-456 (788)
18 KOG0618 Serine/threonine phosp 99.8 8.2E-21 1.8E-25 223.7 -0.9 359 598-974 38-467 (1081)
19 smart00255 TIR Toll - interleu 99.8 3.9E-18 8.4E-23 170.8 11.9 137 65-203 1-139 (140)
20 PRK15370 E3 ubiquitin-protein 99.7 1.2E-17 2.7E-22 206.5 13.3 247 637-949 177-427 (754)
21 PRK15370 E3 ubiquitin-protein 99.7 1.4E-17 3E-22 206.2 13.0 220 728-969 200-426 (754)
22 KOG0617 Ras suppressor protein 99.6 2.8E-17 6E-22 157.2 -3.0 172 650-867 23-195 (264)
23 KOG4237 Extracellular matrix p 99.6 1.8E-16 4E-21 170.8 -1.0 136 626-761 55-199 (498)
24 KOG0617 Ras suppressor protein 99.6 1.6E-16 3.5E-21 152.0 -3.1 150 773-947 32-183 (264)
25 KOG4237 Extracellular matrix p 99.5 2.2E-15 4.9E-20 162.5 -0.8 144 644-831 52-198 (498)
26 cd00116 LRR_RI Leucine-rich re 99.5 2E-14 4.3E-19 165.9 3.5 209 742-950 43-291 (319)
27 cd00116 LRR_RI Leucine-rich re 99.5 2.2E-14 4.8E-19 165.5 3.9 271 664-948 2-318 (319)
28 PF13676 TIR_2: TIR domain; PD 99.4 3.5E-13 7.5E-18 126.6 3.8 87 68-160 1-87 (102)
29 PRK04841 transcriptional regul 99.3 1.3E-10 2.9E-15 153.7 26.9 294 235-551 9-335 (903)
30 KOG0532 Leucine-rich repeat (L 99.2 4.1E-12 8.9E-17 143.5 -0.8 181 764-948 88-271 (722)
31 PRK00411 cdc6 cell division co 99.1 1.4E-08 3E-13 120.7 26.1 282 236-529 26-358 (394)
32 KOG4658 Apoptotic ATPase [Sign 99.1 3.9E-11 8.4E-16 151.5 3.9 247 728-976 524-788 (889)
33 COG4886 Leucine-rich repeat (L 99.1 2.4E-10 5.3E-15 135.8 8.4 181 728-935 117-298 (394)
34 KOG0532 Leucine-rich repeat (L 99.1 1.4E-11 3E-16 139.4 -2.4 190 774-968 75-270 (722)
35 TIGR00635 ruvB Holliday juncti 99.1 2.3E-09 4.9E-14 122.6 15.8 271 240-533 4-293 (305)
36 COG4886 Leucine-rich repeat (L 99.0 2.2E-10 4.8E-15 136.2 7.5 198 754-955 97-295 (394)
37 PRK00080 ruvB Holliday junctio 99.0 1.5E-09 3.3E-14 124.8 11.9 275 236-532 21-313 (328)
38 PF01637 Arch_ATPase: Archaeal 99.0 1.7E-09 3.6E-14 118.6 10.8 195 242-441 1-233 (234)
39 PF05729 NACHT: NACHT domain 99.0 4E-09 8.6E-14 108.8 12.1 143 264-411 1-163 (166)
40 TIGR02928 orc1/cdc6 family rep 99.0 1.2E-07 2.5E-12 111.6 26.0 283 236-529 11-350 (365)
41 KOG1259 Nischarin, modulator o 98.9 2.6E-10 5.7E-15 119.1 2.5 132 793-950 279-412 (490)
42 KOG3207 Beta-tubulin folding c 98.9 2.3E-10 5E-15 126.1 1.4 202 747-949 118-338 (505)
43 KOG1259 Nischarin, modulator o 98.9 4.2E-10 9E-15 117.6 0.5 176 770-949 210-386 (490)
44 TIGR03015 pepcterm_ATPase puta 98.9 6.1E-08 1.3E-12 108.8 17.8 178 263-446 43-242 (269)
45 COG3899 Predicted ATPase [Gene 98.8 1.3E-07 2.9E-12 120.4 17.7 305 242-549 2-387 (849)
46 KOG1909 Ran GTPase-activating 98.7 1.8E-09 3.9E-14 116.4 0.5 221 728-949 31-310 (382)
47 KOG3207 Beta-tubulin folding c 98.7 2.2E-09 4.8E-14 118.5 0.7 179 771-949 118-313 (505)
48 PF14580 LRR_9: Leucine-rich r 98.7 1.3E-08 2.8E-13 103.8 4.7 84 867-951 41-127 (175)
49 PF14580 LRR_9: Leucine-rich r 98.7 2E-08 4.4E-13 102.3 5.7 136 807-946 6-149 (175)
50 COG2909 MalT ATP-dependent tra 98.7 8E-07 1.7E-11 107.0 19.0 294 235-551 14-341 (894)
51 PRK06893 DNA replication initi 98.7 2.4E-07 5.2E-12 100.5 13.5 151 263-443 39-204 (229)
52 COG2256 MGS1 ATPase related to 98.6 3.4E-07 7.4E-12 101.3 13.5 173 236-437 20-207 (436)
53 KOG1909 Ran GTPase-activating 98.6 5.8E-09 1.3E-13 112.5 -0.4 132 796-927 155-311 (382)
54 PRK13342 recombination factor 98.5 1.6E-06 3.4E-11 103.0 15.4 178 236-442 8-196 (413)
55 TIGR03420 DnaA_homol_Hda DnaA 98.4 3.9E-06 8.4E-11 91.5 15.6 174 239-444 14-203 (226)
56 PTZ00112 origin recognition co 98.4 5.6E-06 1.2E-10 100.4 17.5 246 235-492 750-1030(1164)
57 PLN03150 hypothetical protein; 98.4 6.1E-07 1.3E-11 111.8 8.1 103 729-831 420-525 (623)
58 KOG0531 Protein phosphatase 1, 98.4 4.8E-08 1E-12 116.4 -1.7 37 893-929 234-270 (414)
59 PRK15386 type III secretion pr 98.3 1.9E-06 4.2E-11 98.1 10.8 153 797-968 51-210 (426)
60 COG3903 Predicted ATPase [Gene 98.3 5.2E-07 1.1E-11 100.8 5.8 279 261-548 12-314 (414)
61 TIGR01242 26Sp45 26S proteasom 98.3 2E-06 4.3E-11 100.5 10.8 173 238-436 120-328 (364)
62 KOG3678 SARM protein (with ste 98.3 2.9E-06 6.3E-11 93.7 10.5 139 62-230 609-756 (832)
63 PRK15386 type III secretion pr 98.3 1.3E-06 2.7E-11 99.7 7.9 59 682-743 51-111 (426)
64 PRK12402 replication factor C 98.3 1.2E-05 2.7E-10 93.4 16.5 197 236-439 11-223 (337)
65 PRK07003 DNA polymerase III su 98.3 1.4E-05 3E-10 97.0 16.9 193 235-441 11-220 (830)
66 PRK14961 DNA polymerase III su 98.3 1.8E-05 4E-10 92.1 17.3 191 236-438 12-216 (363)
67 PLN03150 hypothetical protein; 98.3 1.2E-06 2.6E-11 109.2 7.4 91 752-842 420-511 (623)
68 PRK14963 DNA polymerase III su 98.3 3.3E-05 7.1E-10 92.9 19.3 191 235-438 9-213 (504)
69 KOG0531 Protein phosphatase 1, 98.2 1.9E-07 4.2E-12 111.2 -0.5 217 729-953 97-321 (414)
70 PRK00440 rfc replication facto 98.2 4.8E-05 1E-09 87.7 19.4 183 236-438 13-199 (319)
71 PRK04195 replication factor C 98.2 3.1E-05 6.8E-10 93.9 18.2 179 235-439 9-199 (482)
72 PRK14960 DNA polymerase III su 98.2 5.6E-05 1.2E-09 90.9 19.3 190 236-437 11-214 (702)
73 PF13173 AAA_14: AAA domain 98.2 6.7E-06 1.5E-10 80.5 9.8 119 264-403 3-127 (128)
74 PLN03025 replication factor C 98.2 1.4E-05 3.1E-10 91.6 13.4 183 235-437 8-195 (319)
75 cd00009 AAA The AAA+ (ATPases 98.2 1.3E-05 2.8E-10 80.5 11.5 123 243-382 1-131 (151)
76 PF05496 RuvB_N: Holliday junc 98.2 1.6E-05 3.4E-10 82.9 11.9 173 235-438 19-217 (233)
77 PRK08727 hypothetical protein; 98.2 4.9E-05 1.1E-09 82.7 16.3 168 239-438 18-200 (233)
78 PRK12323 DNA polymerase III su 98.1 4.1E-05 8.9E-10 91.8 16.2 196 235-438 11-221 (700)
79 PRK14949 DNA polymerase III su 98.1 5.9E-05 1.3E-09 93.5 17.7 188 236-442 12-221 (944)
80 PRK05564 DNA polymerase III su 98.1 6E-05 1.3E-09 86.3 16.7 176 240-441 4-189 (313)
81 PTZ00202 tuzin; Provisional 98.1 1.6E-05 3.4E-10 89.9 11.4 193 203-410 218-433 (550)
82 PF13191 AAA_16: AAA ATPase do 98.1 4.1E-06 8.8E-11 88.1 6.6 50 241-290 1-51 (185)
83 PRK07471 DNA polymerase III su 98.1 0.00011 2.5E-09 84.8 18.8 200 235-442 14-238 (365)
84 KOG2120 SCF ubiquitin ligase, 98.1 1.4E-07 3.1E-12 99.2 -4.6 174 728-924 186-373 (419)
85 PRK08903 DnaA regulatory inact 98.1 3.8E-05 8.1E-10 83.7 13.9 174 238-446 16-203 (227)
86 PF13401 AAA_22: AAA domain; P 98.1 9.6E-06 2.1E-10 79.9 8.3 112 263-380 4-125 (131)
87 PRK13341 recombination factor 98.1 3.3E-05 7.1E-10 96.4 14.6 172 236-437 24-212 (725)
88 PRK14957 DNA polymerase III su 98.1 9.3E-05 2E-09 89.1 17.8 183 236-442 12-221 (546)
89 PF00308 Bac_DnaA: Bacterial d 98.1 0.00015 3.3E-09 77.9 17.5 158 262-440 33-206 (219)
90 PRK14956 DNA polymerase III su 98.1 9.4E-05 2E-09 86.7 16.9 192 235-437 13-217 (484)
91 PRK03992 proteasome-activating 98.1 3.4E-05 7.5E-10 90.5 13.4 172 238-435 129-336 (389)
92 PRK09087 hypothetical protein; 98.0 7.2E-05 1.6E-09 80.7 14.5 138 263-441 44-194 (226)
93 PRK08691 DNA polymerase III su 98.0 7.3E-05 1.6E-09 90.9 16.0 192 235-438 11-216 (709)
94 KOG2120 SCF ubiquitin ligase, 98.0 2.4E-07 5.2E-12 97.6 -4.6 172 775-970 186-375 (419)
95 PRK05642 DNA replication initi 98.0 0.00015 3.2E-09 79.0 16.5 149 263-441 45-207 (234)
96 PRK08084 DNA replication initi 98.0 0.00013 2.9E-09 79.5 15.9 170 240-441 22-208 (235)
97 PRK06645 DNA polymerase III su 98.0 0.00011 2.3E-09 88.1 16.4 188 235-437 16-224 (507)
98 COG1474 CDC6 Cdc6-related prot 98.0 0.00017 3.8E-09 83.1 17.1 246 235-494 12-291 (366)
99 PRK07994 DNA polymerase III su 98.0 9.4E-05 2E-09 90.4 15.5 195 236-442 12-221 (647)
100 KOG2028 ATPase related to the 98.0 3.5E-05 7.7E-10 83.6 10.2 150 236-410 134-293 (554)
101 PRK14962 DNA polymerase III su 98.0 0.00016 3.4E-09 86.4 16.6 182 235-444 9-221 (472)
102 TIGR02397 dnaX_nterm DNA polym 97.9 0.00023 4.9E-09 83.5 17.4 184 236-442 10-218 (355)
103 PF13855 LRR_8: Leucine rich r 97.9 1E-05 2.3E-10 67.6 4.3 58 728-785 2-60 (61)
104 KOG4341 F-box protein containi 97.9 8.2E-07 1.8E-11 98.2 -3.2 65 888-952 369-441 (483)
105 PRK07940 DNA polymerase III su 97.9 0.00013 2.8E-09 85.0 14.7 173 239-442 4-213 (394)
106 PRK14951 DNA polymerase III su 97.9 0.00027 5.8E-09 86.4 17.9 192 236-438 12-221 (618)
107 PRK14964 DNA polymerase III su 97.9 0.00021 4.6E-09 84.8 16.6 174 236-437 9-212 (491)
108 PRK14087 dnaA chromosomal repl 97.9 0.00019 4.1E-09 85.6 16.0 164 263-443 141-320 (450)
109 TIGR02903 spore_lon_C ATP-depe 97.9 0.00016 3.6E-09 89.5 15.7 205 236-445 150-398 (615)
110 KOG1859 Leucine-rich repeat pr 97.9 6.1E-07 1.3E-11 104.8 -5.1 126 728-858 165-292 (1096)
111 PRK14958 DNA polymerase III su 97.9 0.00026 5.6E-09 85.5 16.7 180 235-437 11-215 (509)
112 PRK05896 DNA polymerase III su 97.9 0.0002 4.4E-09 86.2 15.4 197 235-443 11-222 (605)
113 PRK09112 DNA polymerase III su 97.9 0.00024 5.3E-09 81.6 15.3 196 235-442 18-240 (351)
114 PF14516 AAA_35: AAA-like doma 97.8 0.0039 8.5E-08 71.7 24.9 205 235-449 6-246 (331)
115 TIGR03689 pup_AAA proteasome A 97.8 0.00039 8.4E-09 83.0 16.8 157 238-411 180-378 (512)
116 PF13855 LRR_8: Leucine rich r 97.8 1.8E-05 3.8E-10 66.2 3.9 57 775-831 2-59 (61)
117 PRK14955 DNA polymerase III su 97.8 0.0004 8.7E-09 82.0 16.8 197 235-437 11-223 (397)
118 KOG1859 Leucine-rich repeat pr 97.8 7.8E-07 1.7E-11 104.0 -6.0 129 799-930 165-295 (1096)
119 PRK14969 DNA polymerase III su 97.8 0.00027 6E-09 85.9 15.4 184 236-442 12-221 (527)
120 PRK14970 DNA polymerase III su 97.8 0.00048 1E-08 80.9 16.6 181 235-437 12-204 (367)
121 PTZ00361 26 proteosome regulat 97.8 8.2E-05 1.8E-09 87.4 9.9 156 236-413 179-369 (438)
122 KOG2982 Uncharacterized conser 97.8 2.4E-05 5.3E-10 82.8 4.7 183 773-955 70-267 (418)
123 PRK14088 dnaA chromosomal repl 97.8 0.0006 1.3E-08 81.3 17.2 158 263-440 130-303 (440)
124 KOG0989 Replication factor C, 97.8 0.00047 1E-08 74.2 14.3 193 235-444 31-233 (346)
125 PRK14954 DNA polymerase III su 97.8 0.00095 2.1E-08 82.0 19.1 197 235-437 11-223 (620)
126 PRK14952 DNA polymerase III su 97.8 0.00096 2.1E-08 81.3 18.9 197 236-444 9-222 (584)
127 KOG4341 F-box protein containi 97.7 2.2E-06 4.7E-11 94.9 -3.4 272 661-971 139-439 (483)
128 PHA02544 44 clamp loader, smal 97.7 0.0003 6.5E-09 80.9 13.9 151 235-409 16-171 (316)
129 PRK09376 rho transcription ter 97.7 3.2E-05 6.9E-10 87.4 5.6 93 263-357 169-270 (416)
130 PRK14959 DNA polymerase III su 97.7 0.00045 9.7E-09 83.8 15.5 199 236-446 12-225 (624)
131 PRK09111 DNA polymerase III su 97.7 0.00077 1.7E-08 82.6 17.7 195 235-440 19-231 (598)
132 PTZ00454 26S protease regulato 97.7 0.00025 5.5E-09 82.8 12.9 175 236-436 141-351 (398)
133 TIGR00678 holB DNA polymerase 97.7 0.00025 5.4E-09 74.7 11.7 88 342-437 95-186 (188)
134 PRK06620 hypothetical protein; 97.7 0.00046 1E-08 73.8 13.4 131 264-437 45-184 (214)
135 PRK00149 dnaA chromosomal repl 97.7 0.0008 1.7E-08 81.1 16.8 178 263-461 148-349 (450)
136 TIGR02881 spore_V_K stage V sp 97.7 0.00045 9.7E-09 76.8 13.6 132 262-413 41-193 (261)
137 PRK07764 DNA polymerase III su 97.7 0.0012 2.5E-08 83.9 18.7 187 236-437 11-216 (824)
138 TIGR00362 DnaA chromosomal rep 97.7 0.001 2.2E-08 79.2 17.1 157 263-440 136-308 (405)
139 PF12799 LRR_4: Leucine Rich r 97.7 4.6E-05 1E-09 58.5 3.6 39 892-930 2-40 (44)
140 TIGR02639 ClpA ATP-dependent C 97.6 0.00047 1E-08 87.9 14.8 169 218-411 164-358 (731)
141 PRK06305 DNA polymerase III su 97.6 0.002 4.3E-08 77.0 18.9 195 236-441 13-222 (451)
142 PRK14950 DNA polymerase III su 97.6 0.00092 2E-08 82.8 16.2 195 236-441 12-220 (585)
143 PRK07133 DNA polymerase III su 97.6 0.00088 1.9E-08 82.6 15.5 196 235-443 13-221 (725)
144 PRK08451 DNA polymerase III su 97.6 0.0018 3.8E-08 77.9 17.7 184 236-438 10-214 (535)
145 PRK12422 chromosomal replicati 97.5 0.0016 3.4E-08 77.5 16.4 152 263-435 141-306 (445)
146 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0013 2.9E-08 84.4 16.7 170 218-411 169-363 (852)
147 cd01128 rho_factor Transcripti 97.5 8.3E-05 1.8E-09 80.9 5.0 92 263-356 16-116 (249)
148 COG5238 RNA1 Ran GTPase-activa 97.5 3.5E-05 7.6E-10 80.6 1.7 87 843-947 155-252 (388)
149 PRK14953 DNA polymerase III su 97.5 0.0026 5.7E-08 76.5 17.2 191 236-440 12-218 (486)
150 TIGR02880 cbbX_cfxQ probable R 97.5 0.0032 6.9E-08 70.7 16.8 128 265-412 60-209 (284)
151 COG2255 RuvB Holliday junction 97.5 0.0012 2.6E-08 70.4 12.3 264 235-534 21-316 (332)
152 KOG2982 Uncharacterized conser 97.5 4.5E-05 9.8E-10 80.9 1.8 178 728-927 72-262 (418)
153 PRK10865 protein disaggregatio 97.5 0.0024 5.2E-08 82.4 17.8 170 218-411 160-354 (857)
154 PRK14948 DNA polymerase III su 97.5 0.0032 6.9E-08 77.9 18.0 194 236-440 12-220 (620)
155 PRK14086 dnaA chromosomal repl 97.5 0.0026 5.6E-08 77.0 16.7 153 264-437 315-483 (617)
156 CHL00195 ycf46 Ycf46; Provisio 97.5 0.0059 1.3E-07 73.2 19.6 154 239-413 227-407 (489)
157 KOG4579 Leucine-rich repeat (L 97.5 1.1E-05 2.5E-10 75.8 -2.5 76 873-948 58-134 (177)
158 PRK06647 DNA polymerase III su 97.4 0.0046 9.9E-08 75.6 18.8 190 235-438 11-216 (563)
159 TIGR00767 rho transcription te 97.4 0.0002 4.3E-09 81.7 6.4 93 263-357 168-269 (415)
160 PF08937 DUF1863: MTH538 TIR-l 97.4 0.00026 5.6E-09 69.4 6.3 87 66-157 1-105 (130)
161 PRK14971 DNA polymerase III su 97.4 0.0036 7.9E-08 77.4 17.7 178 236-437 13-217 (614)
162 KOG3665 ZYG-1-like serine/thre 97.4 7.7E-05 1.7E-09 92.8 2.6 127 820-947 147-285 (699)
163 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0032 6.9E-08 81.7 17.4 169 218-411 155-349 (852)
164 CHL00176 ftsH cell division pr 97.4 0.0015 3.3E-08 80.7 13.6 173 238-434 181-386 (638)
165 TIGR01241 FtsH_fam ATP-depende 97.3 0.0015 3.3E-08 79.7 13.0 175 237-436 52-260 (495)
166 KOG2543 Origin recognition com 97.3 0.0076 1.6E-07 67.0 16.8 165 239-410 5-192 (438)
167 PRK08116 hypothetical protein; 97.3 0.00066 1.4E-08 75.3 8.9 101 264-380 115-220 (268)
168 PF12799 LRR_4: Leucine Rich r 97.3 0.00018 4E-09 55.1 3.1 41 914-955 1-41 (44)
169 PRK07399 DNA polymerase III su 97.3 0.0079 1.7E-07 68.3 17.4 191 240-441 4-220 (314)
170 CHL00181 cbbX CbbX; Provisiona 97.3 0.0059 1.3E-07 68.5 15.8 130 264-413 60-211 (287)
171 COG1222 RPT1 ATP-dependent 26S 97.3 0.0057 1.2E-07 67.5 14.9 194 240-462 151-393 (406)
172 CHL00095 clpC Clp protease ATP 97.3 0.0016 3.5E-08 84.1 12.7 168 218-410 161-353 (821)
173 PRK05563 DNA polymerase III su 97.3 0.0062 1.3E-07 74.8 17.0 190 235-437 11-215 (559)
174 KOG0991 Replication factor C, 97.2 0.002 4.3E-08 66.3 10.4 51 236-288 23-73 (333)
175 KOG4579 Leucine-rich repeat (L 97.2 2E-05 4.4E-10 74.2 -3.7 92 842-933 50-142 (177)
176 COG0593 DnaA ATPase involved i 97.2 0.0038 8.2E-08 71.9 13.6 136 262-415 112-261 (408)
177 PRK12377 putative replication 97.2 0.0071 1.5E-07 65.9 14.8 35 263-297 101-135 (248)
178 PF00004 AAA: ATPase family as 97.2 0.0032 6.8E-08 61.8 11.2 23 266-288 1-23 (132)
179 KOG2227 Pre-initiation complex 97.1 0.0067 1.5E-07 69.2 14.3 205 237-445 147-375 (529)
180 KOG3665 ZYG-1-like serine/thre 97.1 0.00016 3.4E-09 90.1 1.7 106 704-811 146-263 (699)
181 PRK11034 clpA ATP-dependent Cl 97.1 0.0026 5.7E-08 80.1 12.3 151 239-411 185-362 (758)
182 PF05673 DUF815: Protein of un 97.1 0.033 7.1E-07 59.5 18.1 55 236-291 23-80 (249)
183 PRK14965 DNA polymerase III su 97.1 0.005 1.1E-07 76.0 14.1 192 236-442 12-221 (576)
184 COG1373 Predicted ATPase (AAA+ 97.1 0.0049 1.1E-07 72.5 13.3 119 265-407 39-163 (398)
185 PRK05707 DNA polymerase III su 97.1 0.013 2.8E-07 67.0 16.1 93 343-442 107-203 (328)
186 PRK07952 DNA replication prote 97.1 0.013 2.7E-07 63.8 15.1 35 263-297 99-133 (244)
187 TIGR00602 rad24 checkpoint pro 97.0 0.003 6.5E-08 77.6 10.7 54 235-288 79-135 (637)
188 KOG1644 U2-associated snRNP A' 97.0 0.0013 2.8E-08 66.7 6.1 99 870-969 44-151 (233)
189 PF05621 TniB: Bacterial TniB 97.0 0.012 2.7E-07 64.6 14.1 184 248-438 45-257 (302)
190 PRK10536 hypothetical protein; 97.0 0.0032 6.9E-08 67.8 9.3 52 239-294 54-107 (262)
191 PRK08181 transposase; Validate 97.0 0.0016 3.4E-08 71.9 7.1 34 264-297 107-140 (269)
192 TIGR01243 CDC48 AAA family ATP 96.9 0.0059 1.3E-07 78.3 13.4 173 238-436 176-381 (733)
193 smart00382 AAA ATPases associa 96.9 0.0017 3.7E-08 64.3 6.6 34 264-297 3-36 (148)
194 PLN00020 ribulose bisphosphate 96.9 0.022 4.8E-07 64.2 15.6 152 262-437 147-333 (413)
195 PRK09183 transposase/IS protei 96.8 0.002 4.3E-08 71.2 6.7 35 263-297 102-136 (259)
196 KOG0744 AAA+-type ATPase [Post 96.8 0.0082 1.8E-07 65.1 10.7 35 263-297 177-215 (423)
197 TIGR01243 CDC48 AAA family ATP 96.8 0.012 2.5E-07 75.6 14.3 172 239-436 452-657 (733)
198 TIGR02640 gas_vesic_GvpN gas v 96.8 0.012 2.5E-07 65.5 12.5 24 265-288 23-46 (262)
199 PF10443 RNA12: RNA12 protein; 96.8 0.25 5.5E-06 57.0 23.0 102 343-448 148-284 (431)
200 COG5238 RNA1 Ran GTPase-activa 96.7 0.00063 1.4E-08 71.5 1.5 179 770-968 26-252 (388)
201 KOG1644 U2-associated snRNP A' 96.7 0.0023 5E-08 64.9 5.4 81 750-832 42-124 (233)
202 PRK00771 signal recognition pa 96.7 0.043 9.4E-07 64.8 16.9 87 190-290 26-122 (437)
203 PRK06526 transposase; Provisio 96.7 0.0023 5E-08 70.2 5.9 34 263-296 98-131 (254)
204 TIGR02639 ClpA ATP-dependent C 96.6 0.065 1.4E-06 68.7 19.2 115 239-365 453-577 (731)
205 PF01695 IstB_IS21: IstB-like 96.6 0.0023 5E-08 66.3 5.1 35 263-297 47-81 (178)
206 PRK10865 protein disaggregatio 96.6 0.019 4.1E-07 74.3 14.5 117 239-364 567-693 (857)
207 COG0466 Lon ATP-dependent Lon 96.6 0.054 1.2E-06 65.4 16.7 157 239-412 322-509 (782)
208 PRK06921 hypothetical protein; 96.6 0.0058 1.2E-07 67.7 8.3 36 263-298 117-153 (266)
209 PRK08769 DNA polymerase III su 96.6 0.037 8.1E-07 62.6 14.9 94 342-443 112-209 (319)
210 PRK08118 topology modulation p 96.6 0.0039 8.4E-08 64.0 6.4 33 264-296 2-37 (167)
211 COG1223 Predicted ATPase (AAA+ 96.6 0.017 3.7E-07 60.7 10.8 172 239-435 120-318 (368)
212 TIGR00763 lon ATP-dependent pr 96.6 0.059 1.3E-06 69.4 18.4 51 241-291 321-375 (775)
213 COG3267 ExeA Type II secretory 96.6 0.062 1.3E-06 57.1 14.9 178 260-444 48-247 (269)
214 PRK11331 5-methylcytosine-spec 96.5 0.0041 8.9E-08 72.4 6.8 54 240-297 175-230 (459)
215 PRK10787 DNA-binding ATP-depen 96.5 0.092 2E-06 67.1 18.7 78 213-291 285-377 (784)
216 KOG0735 AAA+-type ATPase [Post 96.5 0.024 5.2E-07 67.7 12.2 160 263-442 431-616 (952)
217 TIGR03346 chaperone_ClpB ATP-d 96.4 0.017 3.8E-07 75.0 12.2 117 239-364 564-690 (852)
218 PRK11889 flhF flagellar biosyn 96.4 0.072 1.6E-06 61.0 15.0 29 262-290 240-268 (436)
219 KOG0741 AAA+-type ATPase [Post 96.4 0.043 9.3E-07 63.4 13.1 130 261-410 536-685 (744)
220 PF04665 Pox_A32: Poxvirus A32 96.3 0.0037 8E-08 67.1 4.1 34 264-297 14-47 (241)
221 TIGR03345 VI_ClpV1 type VI sec 96.3 0.021 4.6E-07 73.6 11.7 52 239-290 565-623 (852)
222 PRK06090 DNA polymerase III su 96.3 0.13 2.7E-06 58.3 16.5 91 342-442 107-201 (319)
223 COG0542 clpA ATP-binding subun 96.3 0.03 6.4E-07 69.5 12.2 118 240-366 491-618 (786)
224 PRK14974 cell division protein 96.3 0.026 5.7E-07 64.3 11.1 29 262-290 139-167 (336)
225 CHL00095 clpC Clp protease ATP 96.3 0.035 7.6E-07 71.9 13.7 118 239-365 508-635 (821)
226 cd01133 F1-ATPase_beta F1 ATP 96.2 0.014 3E-07 64.0 8.1 93 263-357 69-177 (274)
227 PF02562 PhoH: PhoH-like prote 96.2 0.01 2.2E-07 62.2 6.9 117 262-381 18-156 (205)
228 smart00763 AAA_PrkA PrkA AAA d 96.2 0.011 2.4E-07 67.0 7.6 49 240-288 51-103 (361)
229 cd01131 PilT Pilus retraction 96.2 0.011 2.4E-07 62.6 7.3 110 264-383 2-111 (198)
230 PF13207 AAA_17: AAA domain; P 96.2 0.0042 9.1E-08 60.0 3.7 23 265-287 1-23 (121)
231 PRK06835 DNA replication prote 96.2 0.017 3.7E-07 65.8 9.1 35 264-298 184-218 (329)
232 PRK07261 topology modulation p 96.2 0.016 3.4E-07 59.9 8.0 23 265-287 2-24 (171)
233 PRK10416 signal recognition pa 96.1 0.015 3.3E-07 66.0 8.4 29 262-290 113-141 (318)
234 KOG2739 Leucine-rich acidic nu 96.1 0.0023 4.9E-08 67.9 1.4 103 869-972 44-157 (260)
235 PRK08058 DNA polymerase III su 96.1 0.044 9.5E-07 63.0 12.0 158 241-410 6-181 (329)
236 KOG0731 AAA+-type ATPase conta 96.0 0.16 3.5E-06 62.7 16.6 178 238-438 309-520 (774)
237 COG1618 Predicted nucleotide k 96.0 0.0065 1.4E-07 59.5 3.8 38 264-301 6-45 (179)
238 COG0470 HolB ATPase involved i 96.0 0.042 9.1E-07 63.4 11.5 139 241-398 2-168 (325)
239 COG0488 Uup ATPase components 96.0 0.066 1.4E-06 64.8 13.3 56 336-397 450-511 (530)
240 TIGR00064 ftsY signal recognit 96.0 0.033 7.1E-07 62.0 10.0 30 261-290 70-99 (272)
241 PF08357 SEFIR: SEFIR domain; 96.0 0.0079 1.7E-07 60.7 4.7 64 67-130 2-70 (150)
242 PRK10733 hflB ATP-dependent me 96.0 0.051 1.1E-06 68.3 12.8 129 264-413 186-337 (644)
243 PRK06964 DNA polymerase III su 96.0 0.16 3.4E-06 58.2 15.4 90 342-441 131-224 (342)
244 PRK07993 DNA polymerase III su 95.9 0.11 2.3E-06 59.7 14.0 90 342-438 107-200 (334)
245 PRK04132 replication factor C 95.9 0.091 2E-06 66.7 14.4 150 269-437 570-726 (846)
246 PRK05541 adenylylsulfate kinas 95.9 0.033 7.1E-07 57.9 9.1 35 263-297 7-41 (176)
247 PRK12608 transcription termina 95.9 0.022 4.8E-07 64.9 8.2 92 264-357 134-234 (380)
248 KOG2228 Origin recognition com 95.9 0.065 1.4E-06 58.9 11.2 143 238-381 22-182 (408)
249 TIGR00959 ffh signal recogniti 95.9 0.22 4.8E-06 58.8 16.7 26 263-288 99-124 (428)
250 PRK06871 DNA polymerase III su 95.9 0.11 2.3E-06 59.1 13.6 89 342-437 106-198 (325)
251 PRK11034 clpA ATP-dependent Cl 95.9 0.052 1.1E-06 68.7 12.2 112 240-363 458-579 (758)
252 KOG0730 AAA+-type ATPase [Post 95.8 0.12 2.6E-06 61.9 14.0 163 241-425 435-630 (693)
253 PRK12724 flagellar biosynthesi 95.8 0.23 5E-06 57.7 16.1 25 263-287 223-247 (432)
254 PRK08939 primosomal protein Dn 95.8 0.038 8.2E-07 62.5 9.6 35 263-297 156-190 (306)
255 PRK05703 flhF flagellar biosyn 95.8 0.23 4.9E-06 59.0 16.5 26 263-288 221-246 (424)
256 PRK06696 uridine kinase; Valid 95.8 0.014 3E-07 63.2 5.8 46 245-290 3-49 (223)
257 KOG0733 Nuclear AAA ATPase (VC 95.8 0.12 2.6E-06 61.0 13.3 152 239-412 189-375 (802)
258 cd01120 RecA-like_NTPases RecA 95.7 0.021 4.6E-07 58.1 6.7 34 265-298 1-34 (165)
259 COG1484 DnaC DNA replication p 95.7 0.031 6.8E-07 61.4 8.3 36 262-297 104-139 (254)
260 PRK07667 uridine kinase; Provi 95.7 0.019 4.2E-07 60.6 6.3 42 249-290 3-44 (193)
261 KOG1947 Leucine rich repeat pr 95.7 0.0027 5.9E-08 77.7 -0.3 77 887-972 358-441 (482)
262 TIGR01425 SRP54_euk signal rec 95.6 0.14 3E-06 60.1 13.6 29 262-290 99-127 (429)
263 PRK09361 radB DNA repair and r 95.6 0.043 9.3E-07 59.6 9.0 48 251-298 11-58 (225)
264 TIGR02902 spore_lonB ATP-depen 95.6 0.14 3E-06 62.9 14.1 50 236-287 61-110 (531)
265 PHA00729 NTP-binding motif con 95.6 0.038 8.3E-07 58.7 8.1 27 262-288 16-42 (226)
266 PF00448 SRP54: SRP54-type pro 95.6 0.03 6.5E-07 59.0 7.1 27 264-290 2-28 (196)
267 KOG2739 Leucine-rich acidic nu 95.5 0.0083 1.8E-07 63.7 2.8 81 772-853 63-151 (260)
268 PRK04296 thymidine kinase; Pro 95.5 0.016 3.4E-07 61.0 4.9 110 264-382 3-117 (190)
269 cd01394 radB RadB. The archaea 95.5 0.052 1.1E-06 58.6 9.0 49 250-298 6-54 (218)
270 PRK11608 pspF phage shock prot 95.5 0.19 4E-06 57.8 13.9 48 239-286 5-52 (326)
271 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.032 6.9E-07 55.8 6.6 111 263-395 26-140 (144)
272 PF13177 DNA_pol3_delta2: DNA 95.4 0.14 3E-06 52.3 11.3 133 244-399 1-162 (162)
273 PF07693 KAP_NTPase: KAP famil 95.4 0.67 1.5E-05 53.4 18.6 43 248-290 4-47 (325)
274 PRK12337 2-phosphoglycerate ki 95.4 0.019 4.1E-07 67.0 5.5 26 262-287 254-279 (475)
275 KOG2123 Uncharacterized conser 95.4 0.0019 4.1E-08 68.3 -2.4 99 749-851 18-123 (388)
276 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.05 1.1E-06 56.9 8.2 23 265-287 1-23 (183)
277 COG2607 Predicted ATPase (AAA+ 95.4 0.25 5.4E-06 52.0 12.7 56 238-293 58-115 (287)
278 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.082 1.8E-06 53.2 9.1 117 264-382 3-139 (159)
279 cd01121 Sms Sms (bacterial rad 95.4 0.054 1.2E-06 62.9 9.0 49 250-298 69-117 (372)
280 KOG0728 26S proteasome regulat 95.4 0.29 6.4E-06 51.2 13.1 176 261-461 179-388 (404)
281 COG2812 DnaX DNA polymerase II 95.4 0.1 2.2E-06 62.2 11.3 188 236-436 12-214 (515)
282 PRK10867 signal recognition pa 95.3 0.35 7.6E-06 57.1 15.7 29 262-290 99-127 (433)
283 KOG0733 Nuclear AAA ATPase (VC 95.3 0.085 1.8E-06 62.2 10.1 128 263-412 545-693 (802)
284 TIGR02237 recomb_radB DNA repa 95.3 0.05 1.1E-06 58.3 7.9 43 256-298 5-47 (209)
285 COG0464 SpoVK ATPases of the A 95.2 0.062 1.4E-06 65.8 9.5 152 240-413 242-425 (494)
286 TIGR01817 nifA Nif-specific re 95.2 0.31 6.7E-06 60.3 15.6 51 237-287 193-243 (534)
287 KOG1514 Origin recognition com 95.2 0.45 9.8E-06 57.5 15.8 199 238-444 394-623 (767)
288 KOG1947 Leucine rich repeat pr 95.2 0.0025 5.4E-08 78.1 -3.0 107 749-855 187-305 (482)
289 PF01583 APS_kinase: Adenylyls 95.1 0.029 6.3E-07 56.1 4.8 34 264-297 3-36 (156)
290 cd03214 ABC_Iron-Siderophores_ 95.1 0.068 1.5E-06 55.7 7.9 129 263-395 25-171 (180)
291 PF13238 AAA_18: AAA domain; P 95.0 0.019 4.1E-07 56.0 3.4 22 266-287 1-22 (129)
292 PRK00625 shikimate kinase; Pro 95.0 0.044 9.6E-07 56.4 6.2 24 265-288 2-25 (173)
293 cd01393 recA_like RecA is a b 95.0 0.088 1.9E-06 57.2 8.8 48 251-298 7-60 (226)
294 PRK15455 PrkA family serine pr 95.0 0.029 6.3E-07 66.8 5.2 51 239-289 75-129 (644)
295 PRK12723 flagellar biosynthesi 94.9 0.29 6.3E-06 57.0 13.3 27 262-288 173-199 (388)
296 PRK15429 formate hydrogenlyase 94.9 0.45 9.8E-06 60.8 16.3 50 238-287 374-423 (686)
297 PF00406 ADK: Adenylate kinase 94.9 0.061 1.3E-06 54.2 6.8 91 268-363 1-94 (151)
298 KOG2035 Replication factor C, 94.9 0.16 3.5E-06 54.3 9.7 228 238-480 11-282 (351)
299 PF00485 PRK: Phosphoribulokin 94.8 0.024 5.2E-07 59.9 3.8 26 265-290 1-26 (194)
300 KOG1969 DNA replication checkp 94.8 0.068 1.5E-06 64.4 7.7 76 261-355 324-399 (877)
301 PRK14722 flhF flagellar biosyn 94.8 0.18 3.9E-06 58.2 10.9 29 263-291 137-165 (374)
302 KOG0743 AAA+-type ATPase [Post 94.8 0.23 4.9E-06 57.3 11.4 153 263-449 235-417 (457)
303 TIGR01420 pilT_fam pilus retra 94.8 0.052 1.1E-06 62.8 6.7 105 263-378 122-227 (343)
304 PRK12727 flagellar biosynthesi 94.8 0.17 3.7E-06 60.3 10.8 29 262-290 349-377 (559)
305 PRK08699 DNA polymerase III su 94.7 0.26 5.6E-06 56.3 12.1 85 343-438 114-202 (325)
306 PRK06067 flagellar accessory p 94.7 0.078 1.7E-06 57.9 7.6 49 250-298 12-60 (234)
307 cd03223 ABCD_peroxisomal_ALDP 94.7 0.081 1.7E-06 54.3 7.3 123 263-396 27-161 (166)
308 PF14532 Sigma54_activ_2: Sigm 94.6 0.031 6.7E-07 55.4 3.8 46 243-288 1-46 (138)
309 TIGR02974 phageshock_pspF psp 94.6 0.35 7.5E-06 55.6 12.9 45 242-286 1-45 (329)
310 TIGR03499 FlhF flagellar biosy 94.6 0.32 7E-06 54.6 12.3 29 262-290 193-221 (282)
311 PRK05022 anaerobic nitric oxid 94.6 0.56 1.2E-05 57.6 15.2 50 238-287 185-234 (509)
312 PRK11823 DNA repair protein Ra 94.5 0.13 2.8E-06 61.5 9.3 50 249-298 66-115 (446)
313 PF07726 AAA_3: ATPase family 94.5 0.019 4.2E-07 54.8 1.7 28 266-293 2-29 (131)
314 COG0542 clpA ATP-binding subun 94.5 0.17 3.6E-06 63.0 10.2 155 238-411 168-346 (786)
315 PTZ00301 uridine kinase; Provi 94.5 0.037 7.9E-07 58.9 4.1 29 263-291 3-31 (210)
316 PRK12726 flagellar biosynthesi 94.4 0.6 1.3E-05 53.5 13.7 36 262-297 205-240 (407)
317 PF08433 KTI12: Chromatin asso 94.4 0.087 1.9E-06 58.3 7.0 26 264-289 2-27 (270)
318 TIGR03574 selen_PSTK L-seryl-t 94.4 0.12 2.7E-06 57.0 8.2 26 265-290 1-26 (249)
319 cd02019 NK Nucleoside/nucleoti 94.3 0.036 7.8E-07 47.4 3.0 23 265-287 1-23 (69)
320 PRK03839 putative kinase; Prov 94.3 0.033 7.1E-07 58.1 3.3 24 265-288 2-25 (180)
321 PRK13531 regulatory ATPase Rav 94.3 0.077 1.7E-06 62.6 6.5 46 240-289 20-65 (498)
322 cd01129 PulE-GspE PulE/GspE Th 94.3 0.16 3.6E-06 56.2 8.9 100 248-362 68-168 (264)
323 PRK08356 hypothetical protein; 94.3 0.2 4.4E-06 52.9 9.3 21 264-284 6-26 (195)
324 cd03222 ABC_RNaseL_inhibitor T 94.3 0.094 2E-06 54.2 6.5 112 264-396 26-146 (177)
325 cd03216 ABC_Carb_Monos_I This 94.2 0.07 1.5E-06 54.6 5.5 125 263-395 26-155 (163)
326 TIGR00416 sms DNA repair prote 94.2 0.17 3.7E-06 60.6 9.5 50 249-298 80-129 (454)
327 COG4608 AppF ABC-type oligopep 94.2 0.1 2.2E-06 56.4 6.8 123 262-387 38-176 (268)
328 cd03228 ABCC_MRP_Like The MRP 94.2 0.13 2.9E-06 53.1 7.5 123 263-395 28-167 (171)
329 KOG2123 Uncharacterized conser 94.2 0.0042 9.1E-08 65.8 -3.6 84 869-954 20-105 (388)
330 PRK06762 hypothetical protein; 94.2 0.041 9E-07 56.5 3.7 24 264-287 3-26 (166)
331 cd01122 GP4d_helicase GP4d_hel 94.2 0.22 4.7E-06 55.8 9.8 52 262-319 29-81 (271)
332 PF13604 AAA_30: AAA domain; P 94.2 0.22 4.8E-06 52.6 9.2 108 263-383 18-133 (196)
333 PRK08233 hypothetical protein; 94.2 0.038 8.3E-07 57.6 3.5 26 263-288 3-28 (182)
334 COG4088 Predicted nucleotide k 94.2 0.034 7.3E-07 56.7 2.8 30 264-293 2-31 (261)
335 KOG0727 26S proteasome regulat 94.2 0.64 1.4E-05 48.9 12.0 149 240-413 155-341 (408)
336 cd00544 CobU Adenosylcobinamid 94.1 0.28 6.1E-06 50.3 9.6 79 266-352 2-82 (169)
337 cd03115 SRP The signal recogni 94.1 0.25 5.5E-06 51.0 9.5 26 265-290 2-27 (173)
338 PF00910 RNA_helicase: RNA hel 94.1 0.035 7.7E-07 52.2 2.8 26 266-291 1-26 (107)
339 COG0563 Adk Adenylate kinase a 94.1 0.14 3.1E-06 52.9 7.3 91 265-363 2-98 (178)
340 KOG0651 26S proteasome regulat 94.1 0.15 3.2E-06 55.5 7.4 30 263-292 166-195 (388)
341 PRK05480 uridine/cytidine kina 94.1 0.049 1.1E-06 58.4 4.1 27 261-287 4-30 (209)
342 COG0572 Udk Uridine kinase [Nu 94.0 0.055 1.2E-06 56.8 4.1 30 261-290 6-35 (218)
343 PF00560 LRR_1: Leucine Rich R 94.0 0.027 5.8E-07 36.0 1.2 21 728-748 1-21 (22)
344 PTZ00088 adenylate kinase 1; P 94.0 0.14 3E-06 55.3 7.4 22 266-287 9-30 (229)
345 PRK04040 adenylate kinase; Pro 94.0 0.048 1E-06 57.1 3.7 25 264-288 3-27 (188)
346 KOG0734 AAA+-type ATPase conta 93.9 0.36 7.9E-06 56.2 10.7 148 239-411 303-484 (752)
347 PF13671 AAA_33: AAA domain; P 93.9 0.05 1.1E-06 54.2 3.5 24 265-288 1-24 (143)
348 KOG1051 Chaperone HSP104 and r 93.9 0.56 1.2E-05 59.4 13.2 105 240-356 562-673 (898)
349 TIGR03600 phage_DnaB phage rep 93.9 0.79 1.7E-05 54.9 14.3 72 242-320 174-246 (421)
350 TIGR00235 udk uridine kinase. 93.9 0.059 1.3E-06 57.6 4.2 28 261-288 4-31 (207)
351 cd02027 APSK Adenosine 5'-phos 93.8 0.2 4.3E-06 50.4 7.8 24 265-288 1-24 (149)
352 KOG1970 Checkpoint RAD17-RFC c 93.8 0.23 5E-06 58.2 9.0 41 247-287 89-134 (634)
353 cd03247 ABCC_cytochrome_bd The 93.8 0.22 4.9E-06 51.7 8.4 122 263-396 28-170 (178)
354 PRK06995 flhF flagellar biosyn 93.7 0.52 1.1E-05 56.3 12.1 28 263-290 256-283 (484)
355 TIGR01360 aden_kin_iso1 adenyl 93.7 0.059 1.3E-06 56.6 3.7 26 262-287 2-27 (188)
356 PRK09270 nucleoside triphospha 93.7 0.098 2.1E-06 56.9 5.6 31 260-290 30-60 (229)
357 cd03230 ABC_DR_subfamily_A Thi 93.6 0.16 3.5E-06 52.5 6.9 124 263-395 26-168 (173)
358 PF03308 ArgK: ArgK protein; 93.6 0.19 4.1E-06 54.1 7.3 41 250-290 16-56 (266)
359 COG1121 ZnuC ABC-type Mn/Zn tr 93.6 0.19 4.2E-06 54.2 7.5 52 333-386 147-204 (254)
360 KOG0652 26S proteasome regulat 93.6 1.5 3.2E-05 46.5 13.5 159 263-446 205-391 (424)
361 KOG2004 Mitochondrial ATP-depe 93.6 0.079 1.7E-06 63.6 4.9 53 240-292 411-467 (906)
362 TIGR01351 adk adenylate kinase 93.6 0.18 3.8E-06 54.1 7.3 22 266-287 2-23 (210)
363 PRK00131 aroK shikimate kinase 93.6 0.056 1.2E-06 55.9 3.3 25 263-287 4-28 (175)
364 PF00560 LRR_1: Leucine Rich R 93.5 0.026 5.6E-07 36.1 0.5 20 915-934 1-20 (22)
365 COG0703 AroK Shikimate kinase 93.5 0.12 2.6E-06 52.3 5.4 28 264-291 3-30 (172)
366 PRK06217 hypothetical protein; 93.5 0.22 4.7E-06 52.1 7.6 23 265-287 3-25 (183)
367 TIGR02858 spore_III_AA stage I 93.5 0.25 5.3E-06 54.8 8.3 117 262-384 110-232 (270)
368 cd03238 ABC_UvrA The excision 93.4 0.31 6.7E-06 50.4 8.5 23 263-285 21-43 (176)
369 TIGR00150 HI0065_YjeE ATPase, 93.4 0.1 2.3E-06 50.7 4.7 26 262-287 21-46 (133)
370 TIGR02788 VirB11 P-type DNA tr 93.4 0.079 1.7E-06 60.4 4.5 94 262-362 143-237 (308)
371 cd00267 ABC_ATPase ABC (ATP-bi 93.4 0.11 2.4E-06 52.7 5.2 123 264-395 26-153 (157)
372 PRK13947 shikimate kinase; Pro 93.4 0.056 1.2E-06 55.8 3.1 25 265-289 3-27 (171)
373 cd01123 Rad51_DMC1_radA Rad51_ 93.4 0.17 3.6E-06 55.4 6.8 47 252-298 8-60 (235)
374 cd03232 ABC_PDR_domain2 The pl 93.2 0.27 5.8E-06 51.9 7.8 24 263-286 33-56 (192)
375 PRK10820 DNA-binding transcrip 93.2 1.3 2.9E-05 54.3 15.0 50 237-286 201-250 (520)
376 PRK06547 hypothetical protein; 93.2 0.084 1.8E-06 54.3 3.9 27 261-287 13-39 (172)
377 PRK14526 adenylate kinase; Pro 93.2 0.24 5.3E-06 52.8 7.5 22 266-287 3-24 (211)
378 PF07728 AAA_5: AAA domain (dy 93.1 0.07 1.5E-06 52.9 3.1 22 266-287 2-23 (139)
379 cd03240 ABC_Rad50 The catalyti 93.1 0.35 7.7E-06 51.4 8.7 59 336-396 132-196 (204)
380 COG1066 Sms Predicted ATP-depe 93.1 0.22 4.7E-06 56.6 7.2 98 249-354 79-179 (456)
381 KOG0729 26S proteasome regulat 93.1 0.33 7.2E-06 51.3 8.0 35 261-300 209-243 (435)
382 cd03246 ABCC_Protease_Secretio 93.1 0.25 5.5E-06 51.0 7.4 124 263-395 28-168 (173)
383 PRK14528 adenylate kinase; Pro 93.1 0.23 5E-06 52.0 7.0 24 264-287 2-25 (186)
384 COG2884 FtsE Predicted ATPase 93.0 0.35 7.7E-06 49.1 7.7 53 333-387 145-203 (223)
385 PRK00889 adenylylsulfate kinas 93.0 0.12 2.5E-06 53.7 4.7 27 263-289 4-30 (175)
386 cd00227 CPT Chloramphenicol (C 93.0 0.077 1.7E-06 55.0 3.3 25 264-288 3-27 (175)
387 COG1120 FepC ABC-type cobalami 93.0 0.28 6.1E-06 53.3 7.6 24 262-285 27-50 (258)
388 PRK00279 adk adenylate kinase; 93.0 0.19 4.2E-06 54.0 6.5 23 265-287 2-24 (215)
389 PRK01184 hypothetical protein; 92.9 0.25 5.5E-06 51.6 7.1 21 264-285 2-22 (184)
390 COG5635 Predicted NTPase (NACH 92.9 0.87 1.9E-05 59.3 13.4 195 265-463 224-449 (824)
391 PRK09354 recA recombinase A; P 92.8 0.31 6.8E-06 55.6 8.0 49 250-298 46-95 (349)
392 COG2019 AdkA Archaeal adenylat 92.8 0.067 1.5E-06 52.9 2.3 25 263-287 4-28 (189)
393 PRK10463 hydrogenase nickel in 92.8 0.23 4.9E-06 55.1 6.7 36 260-295 101-136 (290)
394 TIGR00708 cobA cob(I)alamin ad 92.8 0.92 2E-05 46.3 10.5 29 263-291 5-33 (173)
395 cd02028 UMPK_like Uridine mono 92.8 0.11 2.4E-06 53.9 4.1 26 265-290 1-26 (179)
396 COG0467 RAD55 RecA-superfamily 92.7 0.26 5.7E-06 54.7 7.3 45 254-298 14-58 (260)
397 COG0541 Ffh Signal recognition 92.7 3.4 7.4E-05 47.8 15.9 41 249-289 79-126 (451)
398 PRK06731 flhF flagellar biosyn 92.7 1 2.3E-05 49.8 11.7 28 263-290 75-102 (270)
399 PRK03846 adenylylsulfate kinas 92.7 0.15 3.3E-06 54.1 5.0 37 261-297 22-58 (198)
400 PRK14531 adenylate kinase; Pro 92.7 0.28 6E-06 51.3 7.0 24 264-287 3-26 (183)
401 PRK11388 DNA-binding transcrip 92.7 1.5 3.2E-05 55.7 14.8 49 238-286 323-371 (638)
402 COG1875 NYN ribonuclease and A 92.7 0.82 1.8E-05 51.2 10.6 25 260-284 242-266 (436)
403 cd01130 VirB11-like_ATPase Typ 92.7 0.12 2.6E-06 54.2 4.2 92 263-362 25-119 (186)
404 TIGR01069 mutS2 MutS2 family p 92.7 0.41 9E-06 61.2 9.7 181 262-463 321-522 (771)
405 cd03233 ABC_PDR_domain1 The pl 92.6 0.31 6.7E-06 51.8 7.4 26 263-288 33-58 (202)
406 TIGR00390 hslU ATP-dependent p 92.6 0.14 3.1E-06 59.1 5.0 52 240-291 12-75 (441)
407 PF03266 NTPase_1: NTPase; In 92.6 0.11 2.3E-06 53.4 3.5 24 266-289 2-25 (168)
408 cd02025 PanK Pantothenate kina 92.6 0.085 1.8E-06 56.8 3.0 25 265-289 1-25 (220)
409 cd02024 NRK1 Nicotinamide ribo 92.6 0.085 1.8E-06 54.9 2.8 23 265-287 1-23 (187)
410 PF07724 AAA_2: AAA domain (Cd 92.6 0.17 3.7E-06 52.0 5.1 34 263-296 3-37 (171)
411 cd01428 ADK Adenylate kinase ( 92.5 0.48 1E-05 49.9 8.7 22 266-287 2-23 (194)
412 PRK13949 shikimate kinase; Pro 92.5 0.094 2E-06 53.9 3.1 24 265-288 3-26 (169)
413 PRK14529 adenylate kinase; Pro 92.5 0.34 7.5E-06 51.9 7.4 89 266-361 3-95 (223)
414 TIGR02655 circ_KaiC circadian 92.5 0.19 4.2E-06 61.0 6.3 50 249-298 249-298 (484)
415 COG1428 Deoxynucleoside kinase 92.5 0.099 2.2E-06 54.2 3.1 26 263-288 4-29 (216)
416 cd01858 NGP_1 NGP-1. Autoanti 92.4 1 2.2E-05 45.6 10.6 23 263-285 102-124 (157)
417 cd01125 repA Hexameric Replica 92.4 0.92 2E-05 49.7 11.0 24 265-288 3-26 (239)
418 PRK05201 hslU ATP-dependent pr 92.4 0.2 4.4E-06 58.0 5.8 51 240-290 15-77 (443)
419 COG0468 RecA RecA/RadA recombi 92.4 0.21 4.5E-06 55.1 5.7 47 252-298 49-95 (279)
420 cd03281 ABC_MSH5_euk MutS5 hom 92.4 0.13 2.7E-06 55.2 4.0 23 263-285 29-51 (213)
421 KOG3928 Mitochondrial ribosome 92.4 1.3 2.8E-05 50.5 11.8 53 391-446 404-460 (461)
422 KOG4308 LRR-containing protein 92.4 0.0024 5.1E-08 76.4 -10.2 128 821-948 144-301 (478)
423 cd02023 UMPK Uridine monophosp 92.4 0.088 1.9E-06 55.9 2.8 23 265-287 1-23 (198)
424 KOG0739 AAA+-type ATPase [Post 92.3 1.5 3.2E-05 47.6 11.6 48 240-287 133-190 (439)
425 PF00437 T2SE: Type II/IV secr 92.3 0.088 1.9E-06 58.9 2.9 123 240-378 104-228 (270)
426 COG0488 Uup ATPase components 92.3 0.28 6.1E-06 59.6 7.1 58 334-397 162-225 (530)
427 PRK10923 glnG nitrogen regulat 92.2 1.5 3.2E-05 53.5 13.7 47 240-286 138-184 (469)
428 cd00464 SK Shikimate kinase (S 92.2 0.11 2.3E-06 52.5 3.1 22 266-287 2-23 (154)
429 TIGR03877 thermo_KaiC_1 KaiC d 92.2 0.38 8.3E-06 52.6 7.6 48 251-298 9-56 (237)
430 PRK05439 pantothenate kinase; 92.2 0.2 4.3E-06 56.4 5.4 29 261-289 84-112 (311)
431 cd02020 CMPK Cytidine monophos 92.2 0.1 2.2E-06 52.2 2.8 23 265-287 1-23 (147)
432 PF03205 MobB: Molybdopterin g 92.2 0.18 3.8E-06 50.0 4.5 34 264-297 1-34 (140)
433 COG1936 Predicted nucleotide k 92.2 0.1 2.2E-06 52.2 2.7 20 265-284 2-21 (180)
434 TIGR02782 TrbB_P P-type conjug 92.2 0.36 7.8E-06 54.6 7.5 88 264-362 133-223 (299)
435 TIGR02322 phosphon_PhnN phosph 92.2 0.11 2.4E-06 54.0 3.3 25 264-288 2-26 (179)
436 PF10236 DAP3: Mitochondrial r 92.2 4.9 0.00011 45.7 16.7 48 392-439 258-306 (309)
437 COG0396 sufC Cysteine desulfur 92.1 0.46 9.9E-06 50.0 7.4 61 333-393 152-216 (251)
438 cd02021 GntK Gluconate kinase 92.1 0.1 2.2E-06 52.5 2.8 22 265-286 1-22 (150)
439 PRK13948 shikimate kinase; Pro 92.0 0.11 2.4E-06 53.9 2.9 27 262-288 9-35 (182)
440 COG1703 ArgK Putative periplas 92.0 0.2 4.3E-06 54.6 4.8 42 251-292 39-80 (323)
441 PRK13765 ATP-dependent proteas 92.0 0.22 4.7E-06 61.8 5.9 61 235-299 26-87 (637)
442 PRK13946 shikimate kinase; Pro 92.0 0.11 2.4E-06 54.4 2.9 25 263-287 10-34 (184)
443 KOG1532 GTPase XAB1, interacts 92.0 0.14 3E-06 54.6 3.5 38 262-300 18-55 (366)
444 TIGR02524 dot_icm_DotB Dot/Icm 92.0 0.21 4.4E-06 57.9 5.4 95 263-362 134-231 (358)
445 KOG0736 Peroxisome assembly fa 92.0 2 4.4E-05 52.7 13.5 149 235-404 666-849 (953)
446 PF03969 AFG1_ATPase: AFG1-lik 91.9 0.34 7.4E-06 56.0 7.1 98 262-381 61-167 (362)
447 cd00071 GMPK Guanosine monopho 91.9 0.1 2.2E-06 51.6 2.4 27 265-291 1-27 (137)
448 PRK10751 molybdopterin-guanine 91.9 0.17 3.6E-06 51.8 3.9 29 262-290 5-33 (173)
449 TIGR00455 apsK adenylylsulfate 91.8 0.48 1E-05 49.5 7.5 27 263-289 18-44 (184)
450 TIGR03878 thermo_KaiC_2 KaiC d 91.7 0.23 5E-06 55.0 5.2 38 261-298 34-71 (259)
451 PRK07132 DNA polymerase III su 91.7 3.2 6.9E-05 46.8 14.2 153 263-441 18-184 (299)
452 PF06068 TIP49: TIP49 C-termin 91.7 0.26 5.6E-06 55.7 5.4 58 237-294 21-81 (398)
453 COG0003 ArsA Predicted ATPase 91.6 0.22 4.7E-06 56.4 4.9 35 263-297 2-36 (322)
454 PRK14723 flhF flagellar biosyn 91.6 0.71 1.5E-05 57.9 9.8 26 263-288 185-210 (767)
455 PF13481 AAA_25: AAA domain; P 91.6 0.45 9.8E-06 50.1 7.2 26 264-289 33-58 (193)
456 COG0465 HflB ATP-dependent Zn 91.6 1.1 2.3E-05 54.6 10.9 127 263-413 183-335 (596)
457 PRK13975 thymidylate kinase; P 91.6 0.15 3.3E-06 53.9 3.6 26 264-289 3-28 (196)
458 PRK05057 aroK shikimate kinase 91.6 0.14 3E-06 52.9 3.0 24 264-287 5-28 (172)
459 COG1102 Cmk Cytidylate kinase 91.5 0.15 3.3E-06 50.3 3.0 24 265-288 2-25 (179)
460 TIGR00176 mobB molybdopterin-g 91.5 0.15 3.3E-06 51.5 3.2 26 265-290 1-26 (155)
461 PRK14530 adenylate kinase; Pro 91.5 0.15 3.2E-06 54.9 3.3 23 265-287 5-27 (215)
462 COG1136 SalX ABC-type antimicr 91.5 0.54 1.2E-05 50.1 7.4 61 333-396 150-216 (226)
463 PHA02244 ATPase-like protein 91.5 0.47 1E-05 54.2 7.3 46 240-289 96-145 (383)
464 cd03217 ABC_FeS_Assembly ABC-t 91.5 0.5 1.1E-05 50.2 7.3 24 263-286 26-49 (200)
465 PRK12339 2-phosphoglycerate ki 91.5 0.17 3.7E-06 53.3 3.7 25 263-287 3-27 (197)
466 KOG0726 26S proteasome regulat 91.5 0.22 4.8E-06 53.4 4.4 54 239-292 184-248 (440)
467 PRK05986 cob(I)alamin adenolsy 91.5 0.33 7.1E-06 50.3 5.6 118 262-381 21-158 (191)
468 PF08423 Rad51: Rad51; InterP 91.4 0.2 4.2E-06 55.3 4.2 36 251-286 26-61 (256)
469 PLN02674 adenylate kinase 91.4 0.73 1.6E-05 50.1 8.5 24 264-287 32-55 (244)
470 PRK09435 membrane ATPase/prote 91.4 0.41 9E-06 54.5 6.8 31 260-290 53-83 (332)
471 cd01124 KaiC KaiC is a circadi 91.3 0.34 7.3E-06 50.7 5.8 33 265-297 1-33 (187)
472 PRK05800 cobU adenosylcobinami 91.3 0.52 1.1E-05 48.4 6.9 79 265-352 3-85 (170)
473 PRK12678 transcription termina 91.3 0.24 5.2E-06 59.1 4.9 92 264-357 417-517 (672)
474 CHL00206 ycf2 Ycf2; Provisiona 91.3 2 4.3E-05 58.4 13.5 25 263-287 1630-1654(2281)
475 PLN02318 phosphoribulokinase/u 91.3 0.23 5E-06 59.8 4.8 32 256-287 58-89 (656)
476 PF01078 Mg_chelatase: Magnesi 91.3 0.23 4.9E-06 52.0 4.2 43 239-285 2-44 (206)
477 COG1224 TIP49 DNA helicase TIP 91.3 0.4 8.6E-06 53.3 6.2 58 235-292 34-94 (450)
478 cd03243 ABC_MutS_homologs The 91.2 0.16 3.6E-06 53.9 3.3 22 264-285 30-51 (202)
479 KOG0738 AAA+-type ATPase [Post 91.2 0.51 1.1E-05 53.0 7.0 73 213-289 189-271 (491)
480 TIGR00764 lon_rel lon-related 91.2 0.35 7.7E-06 60.1 6.7 59 238-300 16-75 (608)
481 PLN02459 probable adenylate ki 91.2 0.56 1.2E-05 51.3 7.3 90 265-363 31-129 (261)
482 COG2274 SunT ABC-type bacterio 91.2 0.56 1.2E-05 59.1 8.4 22 264-285 500-521 (709)
483 COG2401 ABC-type ATPase fused 91.2 0.41 8.9E-06 54.2 6.3 61 333-393 515-580 (593)
484 PRK05973 replicative DNA helic 91.2 0.51 1.1E-05 51.0 7.0 37 261-297 62-98 (237)
485 KOG0927 Predicted transporter 91.2 0.47 1E-05 55.7 7.0 24 263-286 101-124 (614)
486 TIGR03263 guanyl_kin guanylate 91.1 0.14 3.1E-06 53.2 2.7 24 264-287 2-25 (180)
487 COG0529 CysC Adenylylsulfate k 91.1 0.28 6.1E-06 49.2 4.5 36 262-298 22-57 (197)
488 PF13306 LRR_5: Leucine rich r 91.1 0.49 1.1E-05 46.0 6.3 37 745-783 7-44 (129)
489 PF00158 Sigma54_activat: Sigm 91.0 0.2 4.3E-06 51.4 3.5 45 242-286 1-45 (168)
490 COG2842 Uncharacterized ATPase 90.9 3.1 6.6E-05 45.8 12.5 159 235-415 67-227 (297)
491 cd03213 ABCG_EPDR ABCG transpo 90.9 0.67 1.4E-05 48.9 7.6 25 263-287 35-59 (194)
492 PF13306 LRR_5: Leucine rich r 90.9 0.54 1.2E-05 45.6 6.4 96 728-829 13-111 (129)
493 smart00534 MUTSac ATPase domai 90.9 0.14 3E-06 53.6 2.3 21 265-285 1-21 (185)
494 PRK05342 clpX ATP-dependent pr 90.9 0.28 6.1E-06 57.8 5.1 26 264-289 109-134 (412)
495 PF13504 LRR_7: Leucine rich r 90.9 0.12 2.6E-06 30.7 1.0 13 916-928 3-15 (17)
496 PRK14493 putative bifunctional 90.8 0.26 5.7E-06 54.7 4.5 34 264-298 2-35 (274)
497 PRK03731 aroL shikimate kinase 90.8 0.18 3.9E-06 52.0 3.1 24 264-287 3-26 (171)
498 TIGR00554 panK_bact pantothena 90.8 0.37 8E-06 53.9 5.7 28 261-288 60-87 (290)
499 TIGR01313 therm_gnt_kin carboh 90.8 0.16 3.5E-06 51.9 2.6 22 266-287 1-22 (163)
500 PF00625 Guanylate_kin: Guanyl 90.7 0.17 3.6E-06 53.0 2.7 34 263-296 2-35 (183)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.1e-150 Score=1475.02 Aligned_cols=1075 Identities=35% Similarity=0.585 Sum_probs=898.8
Q ss_pred ccccCCCCCCCCcccEEEcCcccccccchHHHHHHHHhhCCCcccccCCCCCCCCccHHHHHHHhhcceEEEEeccCccc
Q 000922 53 MAASSSCLAAQCKYDVFVSFRGEDTRDNFTSHLVAALCRKKIKTFIDEQLDRGDDISPALLDAIERSKISVIIFSENYAS 132 (1223)
Q Consensus 53 m~~~~~~~~~~~~~dvFis~~g~d~~~~f~~~l~~~L~~~gi~~f~d~~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~ 132 (1223)
||+|| |+++.|+|||||||||+|||++|++|||++|.++||++|+|+++++|+.|++++++||++||++|||||++||+
T Consensus 1 ~~~~~-~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~ 79 (1153)
T PLN03210 1 MASSS-SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYAS 79 (1153)
T ss_pred CCCCC-CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence 56554 45578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhcCCCEEEEEEeeeCCccccccccchhhHHHHHHhhhcCChhHHHHHHHHHHHHhccCCCCCCCC
Q 000922 133 SKWCLDELVKILECKNKNAQMVVPVFYHVDPSDVRKQTGSFGDAFVKHEKQFKGIPEKVQKWRVVLTEASNLSGWDSMNI 212 (1223)
Q Consensus 133 S~wcl~El~~i~~~~~~~~~~v~Pvfy~v~ps~vr~q~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~~a~~~g~~~~~~ 212 (1223)
|+|||+||++|++|+++.+++|+||||+|||+|||+|+|+||+||.+|+++ ...+++++||+||++||+++||++.++
T Consensus 80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~~~~~~ 157 (1153)
T PLN03210 80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGYHSQNW 157 (1153)
T ss_pred chHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCceecCCC
Confidence 999999999999999999999999999999999999999999999999876 467899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhccCCCCCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccC
Q 000922 213 RPEAKLVDEIIEDILKKLKDKSFSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFE 292 (1223)
Q Consensus 213 ~~e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 292 (1223)
.+|+++|++||++|++++ ..+++.+.+++|||++++++|..+|..+.+++++|+||||||+||||||+++|+++..+|+
T Consensus 158 ~~E~~~i~~Iv~~v~~~l-~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~ 236 (1153)
T PLN03210 158 PNEAKMIEEIANDVLGKL-NLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ 236 (1153)
T ss_pred CCHHHHHHHHHHHHHHhh-ccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence 999999999999999999 7788888899999999999999999888889999999999999999999999999999999
Q ss_pred cceeeeec--hhhh---c-----cC-CHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCHHHHHHH
Q 000922 293 GRCFMANV--REES---E-----RG-GLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKPEQLDYL 361 (1223)
Q Consensus 293 ~~~~~~~~--~~~~---~-----~~-~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l 361 (1223)
+.+|+.+. +... . .. ....++++++.++...... .......+++++++||+||||||||+.++|+.+
T Consensus 237 g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~--~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L 314 (1153)
T PLN03210 237 SSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI--KIYHLGAMEERLKHRKVLIFIDDLDDQDVLDAL 314 (1153)
T ss_pred eEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc--ccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHH
Confidence 99998542 1111 0 01 1235667777766543321 111256789999999999999999999999999
Q ss_pred hcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 000922 362 AGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKV 441 (1223)
Q Consensus 362 ~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 441 (1223)
.+...|+++||+||||||+++++..++++.+|+|+.|+++||++||+++||++..+++++++++++|+++|+|+||||++
T Consensus 315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~v 394 (1153)
T PLN03210 315 AGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNV 394 (1153)
T ss_pred HhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99889999999999999999999888888999999999999999999999998888888999999999999999999999
Q ss_pred HHhhhccCCHHHHHHHHhhhccCCCCcHHhHHHHhHhcccH-hHHhHhheeecccCCCCHHHHHHHhcCCC-CHHhhHHH
Q 000922 442 LGSFLQRKCKLQWENALKNLTRISDPDIYDMLKISYNELKQ-EEKSIFLDIACFFKGDDKDFMTRIQDDPE-SVHYGLNV 519 (1223)
Q Consensus 442 lg~~L~~~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~~~~~l~~~~-~~~~~l~~ 519 (1223)
+|++|++++..+|+.++++++..++.+|.++|++||++|++ .+|.||++|||||++.+++.+..+++.++ .+..+++.
T Consensus 395 lgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~ 474 (1153)
T PLN03210 395 LGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKN 474 (1153)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHH
Confidence 99999999999999999999988888999999999999976 58999999999999999999999999888 88889999
Q ss_pred HHhccceEEecCCeEEecHHHHHHHHHHHhhcccCCCCCceeecccccceeeeecCCCcccccccccccccccccccChh
Q 000922 520 LVDKSLVALSCNNKLQIHDLLQEFGREIVRQQSVKEPGKRSRLWYYEDVYQVLKKNKGTESIEGMFLDVSQIEDLHLTSR 599 (1223)
Q Consensus 520 L~~~sLi~~~~~~~~~mHdll~~~~~~i~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~v~~i~ldl~~~~~~~l~~~ 599 (1223)
|+++|||++. .+++.|||++|+||++++++++ .+|++|+|+|+++|+++++.+++|+..+++|++|++..+++.+...
T Consensus 475 L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 475 LVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred HHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 9999999987 6899999999999999999987 7899999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcceEEEecCCCCCCCCCccceeecCCccCCCCCeEEEEEcCCCCCCCCCCCCCCCCceEecCCCCCccccccc
Q 000922 600 AFVKMPNLRLLKFYVPGQITGSDMCTKVHLQQGLQYLPDELRYFHWYGYPLKALPFDFSPENLIELNLPHSKVEQIWEGK 679 (1223)
Q Consensus 600 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~ 679 (1223)
+|.+|.+|++|+++.+.+.. ......++++++..+|.+||+|+|.+|+++.+|..|.+++|++|+|++|+++.+|.++
T Consensus 553 aF~~m~~L~~L~~~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHhcCccccEEEEecccccc--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccccc
Confidence 99999999999998654211 1122567899999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEecCCCCCCcccCcccccccceeecccCCcCCccCCCCCCCccEEEccCCCcccccccccccCccceeeecc
Q 000922 680 KHFNNLVMLCLSHCESLRCFPQNIHFRTLIEIDFSYCINLTEFPEISGNVIELDLKGTAIEEIPSSIECLTKLEELDLAY 759 (1223)
Q Consensus 680 ~~l~~L~~L~Ls~~~~l~~~p~~~~~~~L~~L~Ls~c~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 759 (1223)
..+++|+.|+|++|..++.+|+...+++|+.|+|++|..+. ++|.+++++++|+.|++++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~--------------------~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV--------------------ELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc--------------------ccchhhhccCCCCEEeCCC
Confidence 99999999999999999999988888888888888886554 6778889999999999999
Q ss_pred ccccccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecCCCCccccccccccCCCCcEEEccCCCCCC----
Q 000922 760 CRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELS---- 835 (1223)
Q Consensus 760 c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~~l~---- 835 (1223)
|+.++.+|..+ ++++|+.|++++|..+..+|.. ..+|++|++++|.+..+|..+ .+++|+.|.+.++....
T Consensus 691 c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 691 CENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhcccc
Confidence 99999999877 6999999999999998888865 467899999999999999876 68899999988754321
Q ss_pred --CC-ccccCCCCCCceeecCCcc-cccCCccccccccccEEEccCCCC-CCCCccccCCCCCCEEEcCCCCCC-CCchh
Q 000922 836 --KL-PENLGNLKSLKRLFAKRSA-ISKLPSSIAYLDEVIELSFHGCRG-LVLPPILSGLSSLTKLDLSDCDVM-EIPQD 909 (1223)
Q Consensus 836 --~l-p~~l~~l~~L~~L~l~~n~-i~~lp~~~~~l~~L~~L~l~~~~~-~~~p~~~~~l~~L~~L~L~~~~l~-~lp~~ 909 (1223)
.+ +......++|+.|++++|. +..+|.+++++++|+.|++++|.. ..+|... ++++|+.|+|++|... .+|..
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 11 1122335789999999984 558999999999999999999874 4466654 7899999999998544 45542
Q ss_pred hcCCCCCcEEeCCCCCCcccchhhcCCCCCCEEeccCCCCCCCCCCcc---CCCcEEeccCCcCcCccCCCCccccccch
Q 000922 910 IGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPELP---LRVKLLDASNCKQLQSLPELPSCLEELPI 986 (1223)
Q Consensus 910 l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l~---~~L~~L~~~~c~~L~~l~~~~~~l~~l~~ 986 (1223)
.++|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+|..+ ++|+.|++++|++|..++.. ..|.
T Consensus 845 ---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~-----~~~~ 916 (1153)
T PLN03210 845 ---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN-----GSPS 916 (1153)
T ss_pred ---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC-----CCch
Confidence 478999999999999999999999999999999999999998644 56788899999999876531 1222
Q ss_pred hhhhccccCCCCCcccccccCCcccccccccccchhhhcchHHHHHHHHHHHHHHHHHHhhhcccCCCCeeEEecCCCCC
Q 000922 987 SILEMTSKHSLGSTQFKILADPCMELTFTDCLKLNEKGNNILADLRLIILHMAIASLRLFSEKEFKKPHGISIFLPGSGI 1066 (1223)
Q Consensus 987 ~~~~l~~~~~l~~~~~~~~~~~~~~l~~~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~i 1066 (1223)
....+..+. ... ++ +-..+.|.||++|++.+. ++. ......+++||.++
T Consensus 917 ~~~~~~~n~-~~~--~p----~~~~l~f~nC~~L~~~a~---------l~~---------------~~~~~~~~l~g~ev 965 (1153)
T PLN03210 917 EVAMATDNI-HSK--LP----STVCINFINCFNLDQEAL---------LQQ---------------QSIFKQLILSGEEV 965 (1153)
T ss_pred hhhhhcccc-ccc--CC----chhccccccccCCCchhh---------hcc---------------cccceEEECCCccC
Confidence 221111110 000 00 112367899999975431 111 01123478999999
Q ss_pred CCCcccccCCceEE-EEcCCCcCCCcccceEEEEEEecCCCCCCCCCeeEEEEEEEeeeccccccc---ccceeecCCCc
Q 000922 1067 PDWFSNQGSGSSIT-IQLSQHCCSTNLIGFSVCAVIEYEDDFPNGGGYFNVGCSYCFEITALSETK---HDDFWYLGNQV 1142 (1223)
Q Consensus 1067 P~wf~~~~~g~s~~-i~l~~~~~~~~~~gf~~c~v~~~~~~~~~~~~~~~v~c~~~~~~~~~~~~~---~~~~~~~~~~~ 1142 (1223)
|+||.||+.|++++ |++|+.|++..|.||++|+|+++.+... ....+.+.|.|+++...++... +.+.|..
T Consensus 966 p~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~-~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~---- 1040 (1153)
T PLN03210 966 PSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFI-ISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSV---- 1040 (1153)
T ss_pred chhccCCcccceeeeeccCCcccCCCccceEEEEEEecCcccc-CCCceeEEEEEEEECCCCCccccCCCceeEee----
Confidence 99999999999999 9999999988899999999998876443 2345778888887554433221 1112211
Q ss_pred cCCCCcEEEEEEeccCcC-----CC--CCceEEEEEEEeeeecCCCCCcEEEEeceeEEecCCCccccccccccCCCCCh
Q 000922 1143 STCSDHIYIGFRPCINFG-----LP--DGISVSFHFFTYNLFTNNENGHKVKSCGVCPVYAHPNQTKLNTFTINMLPPSE 1215 (1223)
Q Consensus 1143 ~~~sDHl~l~y~~~~~~~-----~~--~~~~~~f~~~~~~~~~~~~~~~~Vk~CGv~lvy~~~~~~~~~~~~~~~~~~~~ 1215 (1223)
....+|+++|.. +.... .. .-.+++++|.... ....++||+|||+++|+.+.. +-.|||+
T Consensus 1041 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~~~~~cg~~~~~~~~~~--------~~~~~~~ 1107 (1153)
T PLN03210 1041 TKKGSHLVIFDC-CFPLNEDNAPLAELNYDHVDIQFRLTN----KNSQLKLKGCGIRLSEDDSSL--------NNTLPNV 1107 (1153)
T ss_pred eccccceEEecc-cccccccccchhccCCceeeEEEEEec----CCCCeEEEeeeEEEeccCCCc--------ccCCCcc
Confidence 123455554421 11110 00 0134445554222 233489999999999965533 3355998
Q ss_pred hhhhh
Q 000922 1216 EECDE 1220 (1223)
Q Consensus 1216 ~~~~~ 1220 (1223)
.||||
T Consensus 1108 ~~~~~ 1112 (1153)
T PLN03210 1108 EEADD 1112 (1153)
T ss_pred ccccc
Confidence 88876
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4e-58 Score=571.52 Aligned_cols=632 Identities=26% Similarity=0.319 Sum_probs=448.9
Q ss_pred eehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHH---HhhccCcceeeeechhhhccCCHHHHHHHHHHH
Q 000922 243 VGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQ---ISNDFEGRCFMANVREESERGGLVYLRERLYSE 319 (1223)
Q Consensus 243 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 319 (1223)
||.+..++++...|..++. .+|||+||||+||||||+.++|+ +..+|+.++|+. +++.+....++++++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999999976554 99999999999999999999993 789999999995 56688889999999998
Q ss_pred HhhhccCcCCC--Cc-hHHHHHHHhcCeEEEEecCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh-cCCCceEEe
Q 000922 320 ILEETLKIRTP--SV-PKCIKERLQQMKVFVVLDDVNKPEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDK-CRVDKIYEV 395 (1223)
Q Consensus 320 l~~~~~~~~~~--~~-~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~-~~~~~~~~l 395 (1223)
+.......... +. ...+.+.|++||+||||||||+...|+.+..+++....||+|++|||++.|+.. +++...+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 87644432221 23 788899999999999999999999999999999988889999999999999998 888899999
Q ss_pred cCCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHhCCCchHHHHHHhhhccC-CHHHHHHHHhhhccC-----C--C
Q 000922 396 EGLNQNEALEHFSNYAFRQN-ICPKDFLVLSERIVFYANGNPLALKVLGSFLQRK-CKLQWENALKNLTRI-----S--D 466 (1223)
Q Consensus 396 ~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~-~~~~w~~~l~~l~~~-----~--~ 466 (1223)
+.|+.+|||.||++.||... ...+...++|++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+... + .
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999998763 3335588999999999999999999999999987 667999999988664 1 4
Q ss_pred CcHHhHHHHhHhcccHhHHhHhheeecccCCCCHHH--HHHHhcCCC-------------CHHhhHHHHHhccceEEecC
Q 000922 467 PDIYDMLKISYNELKQEEKSIFLDIACFFKGDDKDF--MTRIQDDPE-------------SVHYGLNVLVDKSLVALSCN 531 (1223)
Q Consensus 467 ~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~~~~--~~~~l~~~~-------------~~~~~l~~L~~~sLi~~~~~ 531 (1223)
+.|..+|++|||.||++.|.||+|||+||+++.++. +...|.+.| .+...+..|++++|+.....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 568899999999999999999999999999997643 444443222 35567999999999987642
Q ss_pred ----CeEEecHHHHHHHHHHHhhcccCCCCCceeecccccceeeeecCCCcccccccccccccccccccChhhhcCCCCc
Q 000922 532 ----NKLQIHDLLQEFGREIVRQQSVKEPGKRSRLWYYEDVYQVLKKNKGTESIEGMFLDVSQIEDLHLTSRAFVKMPNL 607 (1223)
Q Consensus 532 ----~~~~mHdll~~~~~~i~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~v~~i~ldl~~~~~~~l~~~~f~~m~~L 607 (1223)
..+.|||++|+||..++.+....... .+.....+.
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~------------~iv~~~~~~----------------------------- 513 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEEN------------QIVSDGVGL----------------------------- 513 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccc------------eEEECCcCc-----------------------------
Confidence 57899999999999998754321110 000000000
Q ss_pred ceEEEecCCCCCCCCCccceeecCCccCCCCCeEEEEEcCCCCCCCCCCCCCCCCceEecCCCC--Ccccccc-cccccc
Q 000922 608 RLLKFYVPGQITGSDMCTKVHLQQGLQYLPDELRYFHWYGYPLKALPFDFSPENLIELNLPHSK--VEQIWEG-KKHFNN 684 (1223)
Q Consensus 608 r~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~~~--i~~l~~~-~~~l~~ 684 (1223)
.+.++.. -+...|...+.++.+..++.....++|+.|-+..|. +..++.+ +..++.
T Consensus 514 -------------------~~~~~~~--~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~ 572 (889)
T KOG4658|consen 514 -------------------SEIPQVK--SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPL 572 (889)
T ss_pred -------------------ccccccc--chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcc
Confidence 0000000 013566777777777777777666677777777765 4444322 455666
Q ss_pred ceEEecCCCCCCcccCcccccccceeecccCCcCCccCCCCCC---CccEEEccCCCcccccccccccCccceeeecccc
Q 000922 685 LVMLCLSHCESLRCFPQNIHFRTLIEIDFSYCINLTEFPEISG---NVIELDLKGTAIEEIPSSIECLTKLEELDLAYCR 761 (1223)
Q Consensus 685 L~~L~Ls~~~~l~~~p~~~~~~~L~~L~Ls~c~~l~~~p~~~~---~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~ 761 (1223)
|++|||++| ..+..+|..++ +|++|+|+++.|+.+|.++++|.+|.+||+..+.
T Consensus 573 LrVLDLs~~-----------------------~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 573 LRVLDLSGN-----------------------SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred eEEEECCCC-----------------------CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccc
Confidence 666666554 44555566666 8888999999999999999999999999999988
Q ss_pred ccccCccccccCCcccEEeecCCc--CcccchhhhcccccceeeecCCCCccccccccccCCCCc----EEEccCCCCCC
Q 000922 762 RLKSLPSSICKLKSLHLLCLYNCS--NFEIFPEILEKMECLEYIDLESTAVKELPSSVEQLKGLR----ELILEDCSELS 835 (1223)
Q Consensus 762 ~l~~lp~~i~~L~~L~~L~L~~c~--~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~----~L~L~~~~~l~ 835 (1223)
.+..+|..+..|++|++|.+..-. .....-..+.++++|+.|....... .+-..+..++.|. .+.+.+ ....
T Consensus 630 ~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~ 707 (889)
T KOG4658|consen 630 RLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKR 707 (889)
T ss_pred ccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccc
Confidence 888888877779999999987643 1122223344555555555543333 1111222333333 222222 2334
Q ss_pred CCccccCCCCCCceeecCCcccccCCc-c-----ccc-cccccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCCC-Cc
Q 000922 836 KLPENLGNLKSLKRLFAKRSAISKLPS-S-----IAY-LDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVME-IP 907 (1223)
Q Consensus 836 ~lp~~l~~l~~L~~L~l~~n~i~~lp~-~-----~~~-l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~-lp 907 (1223)
..+..+..+.+|+.|.+.++.+.+... + ... ++++..+.+.+|.....+.+....++|+.|.+..|...+ +.
T Consensus 708 ~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 708 TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 455667778888888888877754321 1 111 345666666667666666666677888888888877664 33
Q ss_pred hhhcCCCCCcEEeCCCCCCcccchhhcCCCCCCEEeccCCCCCCCCCCccCCCcEEeccCCcCcCccCC
Q 000922 908 QDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPELPLRVKLLDASNCKQLQSLPE 976 (1223)
Q Consensus 908 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l~~~L~~L~~~~c~~L~~l~~ 976 (1223)
+....+..+..+.+..+.+..++ ...++.+.+.+..+|-..+.++.+.+..|+++..+|.
T Consensus 788 ~~~k~~~~l~~~i~~f~~~~~l~---------~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 788 PKLKALLELKELILPFNKLEGLR---------MLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred CHHHHhhhcccEEecccccccce---------eeecCCCCceeEecccCccchhheehhcCcccccCcc
Confidence 34444555555444444333332 1222222333333332334477788888888887774
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.9e-43 Score=346.47 Aligned_cols=155 Identities=29% Similarity=0.500 Sum_probs=142.5
Q ss_pred CCCCCCcccEEEcCcccccccchHHHHHHHHhhCCCcccccC-CCCCCCCccHHHHHHHhhcceEEEEeccCcccchhhH
Q 000922 59 CLAAQCKYDVFVSFRGEDTRDNFTSHLVAALCRKKIKTFIDE-QLDRGDDISPALLDAIERSKISVIIFSENYASSKWCL 137 (1223)
Q Consensus 59 ~~~~~~~~dvFis~~g~d~~~~f~~~l~~~L~~~gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl 137 (1223)
|++...+|||||||||+|||++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++||+|+|||
T Consensus 20 ~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCL 99 (187)
T PLN03194 20 SSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCL 99 (187)
T ss_pred CCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHH
Confidence 344567999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEEEeeeCCcccccc-ccchhhHHHHHHhhhcCChhHHHHHHHHHHHHhccCCCCCCC-Cchh
Q 000922 138 DELVKILECKNKNAQMVVPVFYHVDPSDVRKQ-TGSFGDAFVKHEKQFKGIPEKVQKWRVVLTEASNLSGWDSMN-IRPE 215 (1223)
Q Consensus 138 ~El~~i~~~~~~~~~~v~Pvfy~v~ps~vr~q-~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~~a~~~g~~~~~-~~~e 215 (1223)
+||++|++|+ +.|+||||+|+|+|||+| .|. ...+++++||+||+++|++.|+++.. .++|
T Consensus 100 dEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e 162 (187)
T PLN03194 100 HELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNW 162 (187)
T ss_pred HHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCCH
Confidence 9999999974 469999999999999997 443 23588999999999999999997754 4789
Q ss_pred HHHHHHHHHHHHhhc
Q 000922 216 AKLVDEIIEDILKKL 230 (1223)
Q Consensus 216 ~~~i~~i~~~v~~~l 230 (1223)
+++|++|++.|.++|
T Consensus 163 ~e~i~~iv~~v~k~l 177 (187)
T PLN03194 163 SEVVTMASDAVIKNL 177 (187)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999988
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.3e-35 Score=333.27 Aligned_cols=262 Identities=33% Similarity=0.492 Sum_probs=203.9
Q ss_pred hhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHH--HhhccCcceeeeechhhhccCCHHHHHHHHHHHHhh
Q 000922 245 IYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQ--ISNDFEGRCFMANVREESERGGLVYLRERLYSEILE 322 (1223)
Q Consensus 245 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~ 322 (1223)
||.++++|.+.|....++.++|+|+||||+||||||+++|++ ++.+|+.++|+... .......+.++++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~----~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLS----KNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEE----S-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccc----cccccccccccccccccc
Confidence 688999999999886788999999999999999999999987 88999999998543 334457788888888766
Q ss_pred hccCc-C--CCC-chHHHHHHHhcCeEEEEecCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCC-CceEEecC
Q 000922 323 ETLKI-R--TPS-VPKCIKERLQQMKVFVVLDDVNKPEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRV-DKIYEVEG 397 (1223)
Q Consensus 323 ~~~~~-~--~~~-~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~-~~~~~l~~ 397 (1223)
..... . +.. ....+++.|+++++||||||||+...|+.+...++.+..|++||||||+..++..++. ...|+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 54332 1 111 2788889999999999999999999999988887777889999999999998877654 67999999
Q ss_pred CCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHhCCCchHHHHHHhhhccC-CHHHHHHHHhhhccCC------CCcH
Q 000922 398 LNQNEALEHFSNYAFRQN-ICPKDFLVLSERIVFYANGNPLALKVLGSFLQRK-CKLQWENALKNLTRIS------DPDI 469 (1223)
Q Consensus 398 L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~-~~~~w~~~l~~l~~~~------~~~i 469 (1223)
|+.+||++||.+.++... ...+...+.+++|+++|+|+||||+++|++|+.+ +..+|+..++++.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999998655 3344556789999999999999999999999644 6778999988765432 4568
Q ss_pred HhHHHHhHhcccHhHHhHhheeecccCCCC--HHHHHHHhcCC
Q 000922 470 YDMLKISYNELKQEEKSIFLDIACFFKGDD--KDFMTRIQDDP 510 (1223)
Q Consensus 470 ~~~L~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~~~~~l~~~ 510 (1223)
..++.+||+.|+++.|.||++||+||.++. .+.+..+|...
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e 279 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAE 279 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHC
Confidence 999999999999999999999999999876 45566666543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=3.3e-31 Score=350.94 Aligned_cols=408 Identities=23% Similarity=0.267 Sum_probs=278.5
Q ss_pred CCCCCceeecccccceeeeecCCCcccccccccccccccccccChhhhcCCCCcceEEEecCCCCCCCCCccceeecCCc
Q 000922 554 KEPGKRSRLWYYEDVYQVLKKNKGTESIEGMFLDVSQIEDLHLTSRAFVKMPNLRLLKFYVPGQITGSDMCTKVHLQQGL 633 (1223)
Q Consensus 554 ~~~~~~~rl~~~~~~~~~l~~~~~~~~v~~i~ldl~~~~~~~l~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l 633 (1223)
.+|.++.+.|...+.+......+.....+-..+|++........+.+|..+++|+.|++..+.. ...++.++
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~--------~~~ip~~~ 113 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL--------SGPIPDDI 113 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc--------CCcCChHH
Confidence 3455666778654433333222222222334456655433333467899999999999986541 12345555
Q ss_pred cCCCCCeEEEEEcCCCCCCCCCCCCCCCCceEecCCCCCc-cccccccccccceEEecCCCCCCcccCccc-ccccceee
Q 000922 634 QYLPDELRYFHWYGYPLKALPFDFSPENLIELNLPHSKVE-QIWEGKKHFNNLVMLCLSHCESLRCFPQNI-HFRTLIEI 711 (1223)
Q Consensus 634 ~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~-~~~~L~~L 711 (1223)
.....+|++|++++|.+....+...+.+|++|+|++|.+. .+|..+..+++|++|+|++|.....+|..+ ++++|++|
T Consensus 114 ~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 4445689999999998865444456788999999999887 567778888999999999887766676654 78888999
Q ss_pred cccCCcCCccCCCCCC---CccEEEccCCCcc-cccccccccCccceeeeccccccccCccccccCCcccEEeecCCcCc
Q 000922 712 DFSYCINLTEFPEISG---NVIELDLKGTAIE-EIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNF 787 (1223)
Q Consensus 712 ~Ls~c~~l~~~p~~~~---~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~ 787 (1223)
+|++|.....+|..++ +|++|+|++|.+. .+|..++.+++|++|++++|...+.+|..++++++|++|++++|...
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 9988887777776554 7888888888877 67778888888888888888777788888888888888888888887
Q ss_pred ccchhhhcccccceeeecCCCCcc-ccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccc-cCCcccc
Q 000922 788 EIFPEILEKMECLEYIDLESTAVK-ELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAIS-KLPSSIA 865 (1223)
Q Consensus 788 ~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~-~lp~~~~ 865 (1223)
+.+|..+.++++|++|++++|.+. .+|..+.++++|+.|++++|...+.+|..+..+++|+.|++++|.+. .+|..+.
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 788888888888888888888876 56777778888888888888777777777778888888888887776 5677777
Q ss_pred ccccccEEEccCCCCC-CCCccccCCCCCCEEEcCCCCCC-CCchhhcCCCCCcEEeCCCCCCc-ccchh----------
Q 000922 866 YLDEVIELSFHGCRGL-VLPPILSGLSSLTKLDLSDCDVM-EIPQDIGRASSLEILDISGNDFD-SLPAS---------- 932 (1223)
Q Consensus 866 ~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~---------- 932 (1223)
.+++|+.|++++|... .+|..+..+++|+.|++++|++. .+|..++.+++|+.|+|++|+++ .+|..
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 7777777777776642 34444444555555555555444 24444444444444444444444 33444
Q ss_pred --------------hcCCCCCCEEeccCCCCCCCCCCcc--CCCcEEeccCCc
Q 000922 933 --------------IKQLSRLRELYLSNCSMLQSLPELP--LRVKLLDASNCK 969 (1223)
Q Consensus 933 --------------l~~l~~L~~L~L~~~~~l~~lp~l~--~~L~~L~~~~c~ 969 (1223)
+..+++|+.|+|++|...+.+|... .+|+.|++++|.
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence 4445555555555555554444322 345666666554
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3.5e-29 Score=331.66 Aligned_cols=378 Identities=23% Similarity=0.264 Sum_probs=238.6
Q ss_pred ccccccccc-ccChhhhcCCCCcceEEEecCCCCCCCCCccceeecCCccCCCCCeEEEEEcCCCCC-CCCCCC-CCCCC
Q 000922 586 LDVSQIEDL-HLTSRAFVKMPNLRLLKFYVPGQITGSDMCTKVHLQQGLQYLPDELRYFHWYGYPLK-ALPFDF-SPENL 662 (1223)
Q Consensus 586 ldl~~~~~~-~l~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~~~~~~l~-~lp~~~-~~~~L 662 (1223)
+|++.+... .+....|.++.+||+|++..+.... .++. ....+|++|++++|.+. .+|..+ .+.+|
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~--------~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG--------SIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCcccc--------ccCc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 344444321 4555667788889988887653210 1111 11246777777777665 344443 56677
Q ss_pred ceEecCCCCCc-cccccccccccceEEecCCCCCCcccCccc-ccccceeecccCCcCCccCCCCCC---CccEEEccCC
Q 000922 663 IELNLPHSKVE-QIWEGKKHFNNLVMLCLSHCESLRCFPQNI-HFRTLIEIDFSYCINLTEFPEISG---NVIELDLKGT 737 (1223)
Q Consensus 663 ~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~-~~~~L~~L~Ls~c~~l~~~p~~~~---~L~~L~L~~~ 737 (1223)
++|+|++|.+. .+|..+..+++|++|+|++|.....+|... ++++|+.|+|++|.....+|..++ +|++|+|++|
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 77777777664 455666667777777777666555555433 566666666666665555554433 5666666666
Q ss_pred Ccc-cccccccccCccceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecCCCCcc-cccc
Q 000922 738 AIE-EIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVK-ELPS 815 (1223)
Q Consensus 738 ~i~-~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~ 815 (1223)
.+. .+|.+++++++|++|++++|...+.+|..+.++++|++|++++|...+.+|..+.++++|++|++++|.+. .+|.
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 665 45556666666666666666655566666666666666666666666666666666666666666666654 4455
Q ss_pred ccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccc-------------------------cCCccccccccc
Q 000922 816 SVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAIS-------------------------KLPSSIAYLDEV 870 (1223)
Q Consensus 816 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~-------------------------~lp~~~~~l~~L 870 (1223)
.+..+++|+.|++++|...+.+|..++.+++|+.|++++|.+. .+|..+..+++|
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 5566666666666666555555555555555555555555544 334445555666
Q ss_pred cEEEccCCCCC-CCCccccCCCCCCEEEcCCCCCCC-CchhhcCCCCCcEEeCCCCCCc-ccchhhcCCCCCCEEeccCC
Q 000922 871 IELSFHGCRGL-VLPPILSGLSSLTKLDLSDCDVME-IPQDIGRASSLEILDISGNDFD-SLPASIKQLSRLRELYLSNC 947 (1223)
Q Consensus 871 ~~L~l~~~~~~-~~p~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~ 947 (1223)
+.|++++|... .+|..+..+++|+.|+|++|.++. +|..+..+++|+.|+|++|++. .+|.. ...++|+.|++++|
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n 485 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRN 485 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCC
Confidence 66666666533 355566677777777777777764 5555677888888888888877 45543 45689999999999
Q ss_pred CCCCCCCCc---cCCCcEEeccCCcCcCccC
Q 000922 948 SMLQSLPEL---PLRVKLLDASNCKQLQSLP 975 (1223)
Q Consensus 948 ~~l~~lp~l---~~~L~~L~~~~c~~L~~l~ 975 (1223)
+..+.+|.. .++|+.|++++|.-...+|
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence 988888853 3578999999886544444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2.1e-30 Score=288.69 Aligned_cols=330 Identities=26% Similarity=0.362 Sum_probs=213.9
Q ss_pred CeEEEEEcCCCCCCCCCCC-CCCCCceEecCCCCCccccccccccccceEEecCCCCCC--cccCcccccccceeecccC
Q 000922 639 ELRYFHWYGYPLKALPFDF-SPENLIELNLPHSKVEQIWEGKKHFNNLVMLCLSHCESL--RCFPQNIHFRTLIEIDFSY 715 (1223)
Q Consensus 639 ~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l--~~~p~~~~~~~L~~L~Ls~ 715 (1223)
.++||.+....+..+|... .+.+|++|.+.+|++.++...+..++.||.+.+.+|+.- ...++.+++..|.+||||+
T Consensus 33 ~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH 112 (1255)
T ss_pred heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecch
Confidence 3455555555555555443 456677777777777777666677777777777665422 2223444677777777776
Q ss_pred CcCCccCCCCCC---CccEEEccCCCccccccc-ccccCccceeeeccccccccCccccccCCcccEEeecCCcCcccch
Q 000922 716 CINLTEFPEISG---NVIELDLKGTAIEEIPSS-IECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFP 791 (1223)
Q Consensus 716 c~~l~~~p~~~~---~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p 791 (1223)
| .+++.|.... |+-.|+|++|+|..||.+ +-+|+.|-+|||++ +.+..+|+.+..|..|++|.|++|.....--
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 4 3555565544 666777777777777764 35667777777776 4566677767777777777777766543333
Q ss_pred hhhcccccceeeecCCCCcc--ccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCcccccccc
Q 000922 792 EILEKMECLEYIDLESTAVK--ELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDE 869 (1223)
Q Consensus 792 ~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~ 869 (1223)
..+..|++|++|.++++.-+ .+|.++..+.+|..++++.| .+..+|+.+-++.+|+.|+|++|.|+++....+...+
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~ 269 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWEN 269 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhh
Confidence 33445666677777766543 66777777777777777654 3456667777777777777777777766666666667
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCC--CCchhhcCCCCCcEEeCCCCCCcccchhhcCCCCCCEEeccCC
Q 000922 870 VIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVM--EIPQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNC 947 (1223)
Q Consensus 870 L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 947 (1223)
|++|+++.|+...+|..++.++.|+.|.+.+|.++ .+|.++|.+.+|+.+..++|.++-+|+++..|+.|+.|.|++|
T Consensus 270 lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 270 LETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc
Confidence 77777777777777777777777777777776655 4777777777777777777777777777777777777777666
Q ss_pred CCCCCCCC---ccCCCcEEeccCCcCcC
Q 000922 948 SMLQSLPE---LPLRVKLLDASNCKQLQ 972 (1223)
Q Consensus 948 ~~l~~lp~---l~~~L~~L~~~~c~~L~ 972 (1223)
.+..+|+ +.+.|+.||+.++++|.
T Consensus 350 -rLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 350 -RLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred -ceeechhhhhhcCCcceeeccCCcCcc
Confidence 3445564 34566666777666665
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.6e-29 Score=281.74 Aligned_cols=341 Identities=23% Similarity=0.332 Sum_probs=284.4
Q ss_pred hhhhcCCCCcceEEEecCCCCCCCCCccceeecCCccCCCCCeEEEEEcCCCCCCCCCCC-CCCCCceEecCCCCCc--c
Q 000922 598 SRAFVKMPNLRLLKFYVPGQITGSDMCTKVHLQQGLQYLPDELRYFHWYGYPLKALPFDF-SPENLIELNLPHSKVE--Q 674 (1223)
Q Consensus 598 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~L~~~~i~--~ 674 (1223)
+.....|..++-|++.... ...+|+.+..+ .+|++|.+.+|++.++-... .++.|+.+.+.+|+++ .
T Consensus 25 P~~v~qMt~~~WLkLnrt~---------L~~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG 94 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTK---------LEQVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG 94 (1255)
T ss_pred chhHHHhhheeEEEechhh---------hhhChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC
Confidence 3445678888888886432 23344444443 36788888888877765443 6778888888888886 5
Q ss_pred ccccccccccceEEecCCCCCCcccCccc-ccccceeecccCCcCCccCCCCCC----CccEEEccCCCccccccccccc
Q 000922 675 IWEGKKHFNNLVMLCLSHCESLRCFPQNI-HFRTLIEIDFSYCINLTEFPEISG----NVIELDLKGTAIEEIPSSIECL 749 (1223)
Q Consensus 675 l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~-~~~~L~~L~Ls~c~~l~~~p~~~~----~L~~L~L~~~~i~~lp~~i~~L 749 (1223)
+|..+.++..|..||||+|+ +++.|... ..+++-+|+||+|+ +..+|.... .|-+|||++|.+..+|+-+..|
T Consensus 95 iP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence 77888888888888888864 55555544 77888888888764 556776655 4668999999999999999999
Q ss_pred Cccceeeeccccc----cccCccccccCCcccEEeecCCcC-cccchhhhcccccceeeecCCCCccccccccccCCCCc
Q 000922 750 TKLEELDLAYCRR----LKSLPSSICKLKSLHLLCLYNCSN-FEIFPEILEKMECLEYIDLESTAVKELPSSVEQLKGLR 824 (1223)
Q Consensus 750 ~~L~~L~L~~c~~----l~~lp~~i~~L~~L~~L~L~~c~~-~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~ 824 (1223)
.+|++|.|++|.. +..+|. +++|++|.+++.+. +..+|.++..|.+|..++++.|.+..+|..+.++.+|+
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPs----mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~Lr 248 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPS----MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLR 248 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCcc----chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhh
Confidence 9999999999864 345554 88999999998654 35689999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCccccCCCCCCceeecCCcccccCCccccccccccEEEccCCCCC--CCCccccCCCCCCEEEcCCCC
Q 000922 825 ELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGL--VLPPILSGLSSLTKLDLSDCD 902 (1223)
Q Consensus 825 ~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~--~~p~~~~~l~~L~~L~L~~~~ 902 (1223)
.|+|++|.. +.+....+...+|++|+++.|+++.+|+.+..|++|+.|.+.+|+.. -+|+.++.+.+|+.+...+|.
T Consensus 249 rLNLS~N~i-teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 249 RLNLSGNKI-TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred eeccCcCce-eeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 999999865 44555667788999999999999999999999999999999988843 489999999999999999999
Q ss_pred CCCCchhhcCCCCCcEEeCCCCCCcccchhhcCCCCCCEEeccCCCCCCCCCC
Q 000922 903 VMEIPQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPE 955 (1223)
Q Consensus 903 l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 955 (1223)
+.-+|.++..++.|+.|.|+.|++.++|+.|.-|+-|+.|++..|+++..-|.
T Consensus 328 LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 328 LELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 99999999999999999999999999999999999999999999999976653
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=4.1e-27 Score=262.00 Aligned_cols=316 Identities=24% Similarity=0.285 Sum_probs=161.2
Q ss_pred CCCCeEEEEEcCCCCCCCCCCC--CCCCCceEecCCCCCccccccccccccceEEecCCCCCCcccC-cccccccceeec
Q 000922 636 LPDELRYFHWYGYPLKALPFDF--SPENLIELNLPHSKVEQIWEGKKHFNNLVMLCLSHCESLRCFP-QNIHFRTLIEID 712 (1223)
Q Consensus 636 l~~~Lr~L~~~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~~~~~~~L~~L~ 712 (1223)
+|...+.|++++|.+..+...+ ++++|++++|.+|.++.+|.......+|+.|+|.+|..-.... .+.-++.|+.||
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 4445555666666655554432 5566666666666666666555555556666666554322211 122445566666
Q ss_pred ccCCcCCccCCCCC--C--CccEEEccCCCcccccc-cccccCccceeeeccccccccCc-cccccCCcccEEeecCCcC
Q 000922 713 FSYCINLTEFPEIS--G--NVIELDLKGTAIEEIPS-SIECLTKLEELDLAYCRRLKSLP-SSICKLKSLHLLCLYNCSN 786 (1223)
Q Consensus 713 Ls~c~~l~~~p~~~--~--~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~L~~c~~ 786 (1223)
||.|.. ..+|... . ++++|+|++|.|+.+-. .|..|.+|.+|.|+.|.. ..+| ..|.+|++|+.|+|..|.+
T Consensus 156 LSrN~i-s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 156 LSRNLI-SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhchh-hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhccccce
Confidence 665432 2222111 1 56666666666665543 455555666666665433 3333 2344466666666655543
Q ss_pred cccchhhhcccccceeeecCCCCccccccc-cccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccC-Cccc
Q 000922 787 FEIFPEILEKMECLEYIDLESTAVKELPSS-VEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKL-PSSI 864 (1223)
Q Consensus 787 ~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~l-p~~~ 864 (1223)
-..---.|..+++|+.|.|..|.|..+.++ |..+.++++|+|..|+....-..++-+|+.|+.|+++.|.|..+ +++.
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 322233455555555555555555555544 45555555555555554444444455555555555555555543 3444
Q ss_pred cccccccEEEccCCCCCCCCc-cccCCCCCCEEEcCCCCCCCCchh-hcCCCCCcEEeCCCCCCcc-c---chhhcCCCC
Q 000922 865 AYLDEVIELSFHGCRGLVLPP-ILSGLSSLTKLDLSDCDVMEIPQD-IGRASSLEILDISGNDFDS-L---PASIKQLSR 938 (1223)
Q Consensus 865 ~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~-l---p~~l~~l~~ 938 (1223)
...++|+.|+++.|....+++ .+..+..|++|+|++|.+..+.+. +..+++|+.|||++|.+.- + ...+..+++
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 555555555555555555443 344555555555555555544332 3445555555555555441 1 112344555
Q ss_pred CCEEeccCCCCCCCCC
Q 000922 939 LRELYLSNCSMLQSLP 954 (1223)
Q Consensus 939 L~~L~L~~~~~l~~lp 954 (1223)
|+.|.+.+| .++++|
T Consensus 394 LrkL~l~gN-qlk~I~ 408 (873)
T KOG4194|consen 394 LRKLRLTGN-QLKSIP 408 (873)
T ss_pred hhheeecCc-eeeecc
Confidence 555555555 344444
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=3e-26 Score=255.13 Aligned_cols=372 Identities=22% Similarity=0.195 Sum_probs=286.0
Q ss_pred ccccccccccccccChhhhcCCCC--cceEEEecCCCCCCCCCccceeecCCccCCCCCeEEEEEcCCCCCCCCCCCCC-
Q 000922 583 GMFLDVSQIEDLHLTSRAFVKMPN--LRLLKFYVPGQITGSDMCTKVHLQQGLQYLPDELRYFHWYGYPLKALPFDFSP- 659 (1223)
Q Consensus 583 ~i~ldl~~~~~~~l~~~~f~~m~~--Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~~~~~~l~~lp~~~~~- 659 (1223)
+..+|++..+.-.++...+.+.-- -+.|++.++. ..++.-....-.++|+.+++..|.+..+|.....
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk---------l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~s 124 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK---------LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHES 124 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccc---------cccCcHHHHhcCCcceeeeeccchhhhcccccccc
Confidence 344555555444444444443322 3446666543 1122212222334788888888889999987754
Q ss_pred CCCceEecCCCCCcccc-ccccccccceEEecCCCCCCcccC--cccccccceeecccCCcCCccCC---CCCCCccEEE
Q 000922 660 ENLIELNLPHSKVEQIW-EGKKHFNNLVMLCLSHCESLRCFP--QNIHFRTLIEIDFSYCINLTEFP---EISGNVIELD 733 (1223)
Q Consensus 660 ~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~~~~~~~L~~L~Ls~c~~l~~~p---~~~~~L~~L~ 733 (1223)
.+|+.|+|.+|.|..+. +.++.++-|+.||||.|.. ..+| .+..-.++++|+|++|...+--. +.+.+|..|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i-s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI-SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh-hcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 56999999999999875 6678899999999998653 3333 33466889999999986544212 2222899999
Q ss_pred ccCCCcccccc-cccccCccceeeeccccccccC-ccccccCCcccEEeecCCcCcccchhhhcccccceeeecCCCCcc
Q 000922 734 LKGTAIEEIPS-SIECLTKLEELDLAYCRRLKSL-PSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVK 811 (1223)
Q Consensus 734 L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~ 811 (1223)
|++|.|+.+|. +|.+|++|+.|+|..|.. +.. -..|.+|++|+.|.|..|.+...-...|-.|.++++|+|..|.+.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 99999999998 677799999999998653 333 334788999999999999888777778899999999999999999
Q ss_pred ccccc-cccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCc-cccccccccEEEccCCCCCCCCc-ccc
Q 000922 812 ELPSS-VEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPS-SIAYLDEVIELSFHGCRGLVLPP-ILS 888 (1223)
Q Consensus 812 ~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~~~~~~~p~-~~~ 888 (1223)
.+..+ +.+|+.|+.|+++.|.....-++.+.-.++|+.|+|+.|.|+.+++ ++..|..|+.|.+++|....+.. .|.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 88764 8899999999999999888888889999999999999999999865 68889999999999998766543 578
Q ss_pred CCCCCCEEEcCCCCCCC----CchhhcCCCCCcEEeCCCCCCcccch-hhcCCCCCCEEeccCCCCCCCCCCcc--CCCc
Q 000922 889 GLSSLTKLDLSDCDVME----IPQDIGRASSLEILDISGNDFDSLPA-SIKQLSRLRELYLSNCSMLQSLPELP--LRVK 961 (1223)
Q Consensus 889 ~l~~L~~L~L~~~~l~~----lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~l~--~~L~ 961 (1223)
++++|++|+|++|.++- -...+..+++|+.|+|.||++.++|. .+..++.|+.|+|.+|..-.--|+.+ ..|+
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk 442 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELK 442 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhh
Confidence 89999999999999873 22336779999999999999999996 68999999999999997654444432 3455
Q ss_pred EEec
Q 000922 962 LLDA 965 (1223)
Q Consensus 962 ~L~~ 965 (1223)
.|.+
T Consensus 443 ~Lv~ 446 (873)
T KOG4194|consen 443 ELVM 446 (873)
T ss_pred hhhh
Confidence 5544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=3.9e-27 Score=251.87 Aligned_cols=213 Identities=26% Similarity=0.296 Sum_probs=110.5
Q ss_pred CeEEEEEcCCCCCCCCCCC-CCCCCceEecCCCCCccccccccccccceEEecCCCCCCcccCcccccccceeecccCCc
Q 000922 639 ELRYFHWYGYPLKALPFDF-SPENLIELNLPHSKVEQIWEGKKHFNNLVMLCLSHCESLRCFPQNIHFRTLIEIDFSYCI 717 (1223)
Q Consensus 639 ~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~L~~L~Ls~c~ 717 (1223)
.+.+|..+.+.+..+|+.. .+..++.|+.++|++.++|+.+..+.+|+.|+.++|......++...+..|+.|+..+|+
T Consensus 69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ 148 (565)
T ss_pred ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc
Confidence 3455555555555555544 445555555555555555555555555555555554443333333344445544444432
Q ss_pred CCccCCCCCC--------------------------CccEEEccCCCcccccccccccCccceeeeccccccccCccccc
Q 000922 718 NLTEFPEISG--------------------------NVIELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSIC 771 (1223)
Q Consensus 718 ~l~~~p~~~~--------------------------~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~ 771 (1223)
. ..+|..+. .|++||...|.++.+|+.++.|.+|..|+|.. +.+..+| +|.
T Consensus 149 i-~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lP-ef~ 225 (565)
T KOG0472|consen 149 I-SSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLP-EFP 225 (565)
T ss_pred c-ccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCC-CCC
Confidence 2 22332222 44455555555555555555555555555554 2334444 244
Q ss_pred cCCcccEEeecCCcCcccchhhh-cccccceeeecCCCCccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCcee
Q 000922 772 KLKSLHLLCLYNCSNFEIFPEIL-EKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRL 850 (1223)
Q Consensus 772 ~L~~L~~L~L~~c~~~~~~p~~l-~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 850 (1223)
++..|++|++..|.+ +.+|... .++++|.+||+..|+++++|..+..+.+|.+|++++|. ...+|-.++++ +|+.|
T Consensus 226 gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 226 GCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFL 302 (565)
T ss_pred ccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeeh
Confidence 455555555544332 2333333 35666666666666666666666666666666666553 34455666666 66666
Q ss_pred ecCCccc
Q 000922 851 FAKRSAI 857 (1223)
Q Consensus 851 ~l~~n~i 857 (1223)
.+.||.+
T Consensus 303 ~leGNPl 309 (565)
T KOG0472|consen 303 ALEGNPL 309 (565)
T ss_pred hhcCCch
Confidence 6655543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=5.3e-27 Score=250.91 Aligned_cols=325 Identities=23% Similarity=0.291 Sum_probs=181.6
Q ss_pred CeEEEEEcCCCCCCCCCCC-CCCCCceEecCCCCCccccccccccccceEEecCCCCCCcccCcccccccceeecccCCc
Q 000922 639 ELRYFHWYGYPLKALPFDF-SPENLIELNLPHSKVEQIWEGKKHFNNLVMLCLSHCESLRCFPQNIHFRTLIEIDFSYCI 717 (1223)
Q Consensus 639 ~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~L~~L~Ls~c~ 717 (1223)
+++.|+.+++.+..+|.++ .+..|..|+..+|++..+|.++..+.+|..|++.+|+.....|+...++.|++||...|
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N- 193 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN- 193 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-
Confidence 3445555555555555443 44455555555555555555555555555555555444443444444555555554432
Q ss_pred CCccCCCCCC---CccEEEccCCCcccccccccccCccceeeeccccccccCccccc-cCCcccEEeecCCcCcccchhh
Q 000922 718 NLTEFPEISG---NVIELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSIC-KLKSLHLLCLYNCSNFEIFPEI 793 (1223)
Q Consensus 718 ~l~~~p~~~~---~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L~L~~c~~~~~~p~~ 793 (1223)
.+..+|..++ .|+-|+|..|+|..+| +|+.+..|..|.++. +.++.+|..++ +|.+|.+|+|..|. +...|+.
T Consensus 194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde 270 (565)
T KOG0472|consen 194 LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDE 270 (565)
T ss_pred hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccc-cccCchH
Confidence 2334444433 3334444445555554 444444444444443 23444444433 44444444444432 3334444
Q ss_pred hcccccceeeecCCCCccccccccccCCCCcEEEccCCC-----------------------------------------
Q 000922 794 LEKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCS----------------------------------------- 832 (1223)
Q Consensus 794 l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~----------------------------------------- 832 (1223)
+..+.+|++||+++|.|+.+|.+++++ +|+.|.+.||.
T Consensus 271 ~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 444444444444444444444444444 44444444332
Q ss_pred -----------------------CCCCCccccCCC---CCCceeecCCcccccC------------------------Cc
Q 000922 833 -----------------------ELSKLPENLGNL---KSLKRLFAKRSAISKL------------------------PS 862 (1223)
Q Consensus 833 -----------------------~l~~lp~~l~~l---~~L~~L~l~~n~i~~l------------------------p~ 862 (1223)
.+..+|...... .-....++++|++.++ |.
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~ 429 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL 429 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH
Confidence 111122111000 0122334444444444 34
Q ss_pred cccccccccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccchh-hcCCCCCCE
Q 000922 863 SIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPAS-IKQLSRLRE 941 (1223)
Q Consensus 863 ~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~ 941 (1223)
.++.+++|..|++++|..-.+|..++.+..|+.|+|+.|.+..+|..+..+..|+.+-.++|++..++++ +.++.+|..
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred HHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 4566789999999999988999999999999999999999988888877777777777777888877765 788888888
Q ss_pred EeccCCCCCCCCCCc---cCCCcEEeccCCc
Q 000922 942 LYLSNCSMLQSLPEL---PLRVKLLDASNCK 969 (1223)
Q Consensus 942 L~L~~~~~l~~lp~l---~~~L~~L~~~~c~ 969 (1223)
|+|.+| .++.+|.. ..+|++|++.+++
T Consensus 510 LDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 510 LDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eccCCC-chhhCChhhccccceeEEEecCCc
Confidence 888777 45566643 3466666666654
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=4.4e-22 Score=263.67 Aligned_cols=334 Identities=27% Similarity=0.428 Sum_probs=249.4
Q ss_pred cccccccceEEecCCCCC------CcccCccc-cc-ccceeecccCCcCCccCCCCCC--CccEEEccCCCccccccccc
Q 000922 678 GKKHFNNLVMLCLSHCES------LRCFPQNI-HF-RTLIEIDFSYCINLTEFPEISG--NVIELDLKGTAIEEIPSSIE 747 (1223)
Q Consensus 678 ~~~~l~~L~~L~Ls~~~~------l~~~p~~~-~~-~~L~~L~Ls~c~~l~~~p~~~~--~L~~L~L~~~~i~~lp~~i~ 747 (1223)
.+..+++|+.|.+.++.. ...+|..+ .+ .+|+.|.+.++. +..+|..+. +|++|+|+++.+..+|..+.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCccccccccccc
Confidence 355667777776654321 11233322 22 457777777753 566665554 89999999999999999999
Q ss_pred ccCccceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecCCC-CccccccccccCCCCcEE
Q 000922 748 CLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLEST-AVKELPSSVEQLKGLREL 826 (1223)
Q Consensus 748 ~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n-~l~~lp~~i~~l~~L~~L 826 (1223)
.+++|+.|+|++|..++.+|. +..+++|++|+|++|..+..+|..++++++|+.|++++| .++.+|..+ ++++|+.|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE
Confidence 999999999999988999986 888999999999999999999999999999999999985 678888876 79999999
Q ss_pred EccCCCCCCCCccccCCCCCCceeecCCcccccCCccccccccccEEEccCCCCCCCCc--------cccCCCCCCEEEc
Q 000922 827 ILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPP--------ILSGLSSLTKLDL 898 (1223)
Q Consensus 827 ~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~p~--------~~~~l~~L~~L~L 898 (1223)
++++|..+..+|.. ..+|+.|++++|.+..+|..+ .+++|..|.+.++....+.. ....+++|+.|+|
T Consensus 710 ~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 710 NLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred eCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 99999988888764 467899999999999999876 57889988888765332221 2234578999999
Q ss_pred CCCC-CCCCchhhcCCCCCcEEeCCCC-CCcccchhhcCCCCCCEEeccCCCCCCCCCCccCCCcEEeccCCcCcCccCC
Q 000922 899 SDCD-VMEIPQDIGRASSLEILDISGN-DFDSLPASIKQLSRLRELYLSNCSMLQSLPELPLRVKLLDASNCKQLQSLPE 976 (1223)
Q Consensus 899 ~~~~-l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l~~~L~~L~~~~c~~L~~l~~ 976 (1223)
++|. +.++|..++++++|+.|+|++| ++..+|..+ ++++|+.|+|++|..++.+|..+.+|+.|+++++ .++.+|
T Consensus 786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n-~i~~iP- 862 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT-GIEEVP- 862 (1153)
T ss_pred CCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC-CCccCh-
Confidence 9985 4469999999999999999986 577888776 7899999999999999999988888998888774 444443
Q ss_pred CCccccccc-hhhhhccccCCCCCcccccccCC-cccccccccccchhh
Q 000922 977 LPSCLEELP-ISILEMTSKHSLGSTQFKILADP-CMELTFTDCLKLNEK 1023 (1223)
Q Consensus 977 ~~~~l~~l~-~~~~~l~~~~~l~~~~~~~~~~~-~~~l~~~~c~~l~~~ 1023 (1223)
.++..++ +..+.+..+..+...+......+ ...+.|.+|.+|...
T Consensus 863 --~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 863 --WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred --HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 3333333 23344444444443322221111 134678889888643
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=7.4e-24 Score=249.11 Aligned_cols=218 Identities=26% Similarity=0.359 Sum_probs=146.7
Q ss_pred ccceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecCCCCccccccccccCCCCcEEEccC
Q 000922 751 KLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPSSVEQLKGLRELILED 830 (1223)
Q Consensus 751 ~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~ 830 (1223)
+|++++++. +.+..+|.+++.+.+|+.|....|.. ..+|..+..+++|+.|.+..|.++.+|...+.+++|++|+|..
T Consensus 242 nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISH-NNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecch-hhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 445555554 23344444455555555555444333 3444444444455555555555555554444455555555444
Q ss_pred CCC------------------------CCCCccc-cCCCCCCceeecCCcccc-cCCccccccccccEEEccCCCCCCCC
Q 000922 831 CSE------------------------LSKLPEN-LGNLKSLKRLFAKRSAIS-KLPSSIAYLDEVIELSFHGCRGLVLP 884 (1223)
Q Consensus 831 ~~~------------------------l~~lp~~-l~~l~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~~~~~~~p 884 (1223)
|.. +..+|.. =..+..|+.|++.+|.++ ..-+.+.++.+|+.|++++|....+|
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 321 1222211 123455777888888887 44556778889999999999988888
Q ss_pred c-cccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccchhhcCCCCCCEEeccCCCCCC-CCCC-cc-CCC
Q 000922 885 P-ILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQ-SLPE-LP-LRV 960 (1223)
Q Consensus 885 ~-~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~-~lp~-l~-~~L 960 (1223)
. .+.+++.|++|+||+|.++.+|+.+..++.|++|...+|++..+| .+..++.|+.+|++.|.... .+|. +| ++|
T Consensus 400 as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L 478 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL 478 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence 6 577899999999999999999999999999999999999999999 78999999999999885432 3443 56 799
Q ss_pred cEEeccCCcCc
Q 000922 961 KLLDASNCKQL 971 (1223)
Q Consensus 961 ~~L~~~~c~~L 971 (1223)
++||+++++.+
T Consensus 479 kyLdlSGN~~l 489 (1081)
T KOG0618|consen 479 KYLDLSGNTRL 489 (1081)
T ss_pred ceeeccCCccc
Confidence 99999998754
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=1.5e-19 Score=221.72 Aligned_cols=262 Identities=23% Similarity=0.272 Sum_probs=152.7
Q ss_pred CCeEEEEEcCCCCCCCCCCCCCCCCceEecCCCCCccccccccccccceEEecCCCCCCcccCcccccccceeecccCCc
Q 000922 638 DELRYFHWYGYPLKALPFDFSPENLIELNLPHSKVEQIWEGKKHFNNLVMLCLSHCESLRCFPQNIHFRTLIEIDFSYCI 717 (1223)
Q Consensus 638 ~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~L~~L~Ls~c~ 717 (1223)
++-..|+++.+.+.++|..+. .+|+.|++.+|+++.+|.. +++|++|+|++| .++.+|.. .++|+.|++++|.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l--p~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL--PPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc--ccccceeeccCCc
Confidence 345677888888888887653 5788888888888888753 467788888776 44455543 3466666666653
Q ss_pred CCccCCCCCCCccEEEccCCCcccccccccccCccceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhccc
Q 000922 718 NLTEFPEISGNVIELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKM 797 (1223)
Q Consensus 718 ~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l 797 (1223)
+..+|....+|+.|+|++|.++.+|.. +++|+.|+|++| .+..+|.. ..+|+.|++++|... .+|.. .
T Consensus 274 -L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p 341 (788)
T PRK15387 274 -LTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNNQLT-SLPTL---P 341 (788)
T ss_pred -hhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC---cccccccccccCccc-ccccc---c
Confidence 445555445666666666666666542 345666666654 33344431 123445555554432 23321 1
Q ss_pred ccceeeecCCCCccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCccccccccccEEEccC
Q 000922 798 ECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHG 877 (1223)
Q Consensus 798 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~ 877 (1223)
.+|++|+|++|.++.+|.. .. +|+.|++++|.+..+|... .+|+.|++++
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~l---p~------------------------~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~ 391 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTL---PS------------------------ELYKLWAYNNRLTSLPALP---SGLKELIVSG 391 (788)
T ss_pred cccceEecCCCccCCCCCC---Cc------------------------ccceehhhccccccCcccc---cccceEEecC
Confidence 2455555555555544432 12 3444455555555444322 3455555555
Q ss_pred CCCCCCCccccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccchhhcCCCCCCEEeccCCCCCCCCC
Q 000922 878 CRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLP 954 (1223)
Q Consensus 878 ~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 954 (1223)
|....+|.. .++|+.|++++|.++.+|.. +.+|+.|++++|+++.+|..+.++++|+.|+|++|+.....|
T Consensus 392 N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 392 NRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHH
Confidence 554444432 24667777777777776643 345667777777777777777777777777777776655443
No 16
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.81 E-value=9.1e-21 Score=189.23 Aligned_cols=132 Identities=36% Similarity=0.597 Sum_probs=117.1
Q ss_pred EEEcCcccccccchHHHHHHHHhhC--CCcccccC-CCCCCCCccHHHHHHHhhcceEEEEeccCcccchhhHHHHHHHH
Q 000922 68 VFVSFRGEDTRDNFTSHLVAALCRK--KIKTFIDE-QLDRGDDISPALLDAIERSKISVIIFSENYASSKWCLDELVKIL 144 (1223)
Q Consensus 68 vFis~~g~d~~~~f~~~l~~~L~~~--gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~ 144 (1223)
|||||++.|++..|+++|..+|++. |+++|+++ |+.+|..+.+++.++|++||++|+|||++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999544899999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HHhhcCC--CEEEEEEeeeCCcccc-ccccchhhHHHHHHhhhcCC--hhHHHHHHHHHH
Q 000922 145 ECKNKNA--QMVVPVFYHVDPSDVR-KQTGSFGDAFVKHEKQFKGI--PEKVQKWRVVLT 199 (1223)
Q Consensus 145 ~~~~~~~--~~v~Pvfy~v~ps~vr-~q~g~~~~~~~~~~~~~~~~--~~~v~~w~~aL~ 199 (1223)
++....+ ++|+||||+|.+++++ .+.+.|+..+..+....... ..+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9987755 7999999999999999 79999999998887665443 567889998865
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=5.3e-19 Score=216.81 Aligned_cols=251 Identities=23% Similarity=0.270 Sum_probs=174.5
Q ss_pred CceEecCCCCCccccccccccccceEEecCCCCCCcccCcccccccceeecccCCcCCccCCCCCCCccEEEccCCCccc
Q 000922 662 LIELNLPHSKVEQIWEGKKHFNNLVMLCLSHCESLRCFPQNIHFRTLIEIDFSYCINLTEFPEISGNVIELDLKGTAIEE 741 (1223)
Q Consensus 662 L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~L~~L~Ls~c~~l~~~p~~~~~L~~L~L~~~~i~~ 741 (1223)
-..|+|+.+.++.+|..+. ++|+.|++++| .++.+|....+|++|+|++|.|+.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N------------------------~Lt~LP~lp~~Lk~LdLs~N~Lts 256 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDN------------------------NLTSLPALPPELRTLEVSGNQLTS 256 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCC------------------------cCCCCCCCCCCCcEEEecCCccCc
Confidence 4456666666666665443 25555665553 233344444566777777777777
Q ss_pred ccccccccCccceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecCCCCccccccccccCC
Q 000922 742 IPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPSSVEQLK 821 (1223)
Q Consensus 742 lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~ 821 (1223)
+|.. .++|+.|++++|. +..+|.. +.+|+.|++++|... .+|.. +++|+.|++++|.++.+|.. ..
T Consensus 257 LP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~ 322 (788)
T PRK15387 257 LPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPAL---PS 322 (788)
T ss_pred ccCc---ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCC---cc
Confidence 6643 3566777777653 4555542 345667777776543 34432 35688888888888877753 23
Q ss_pred CCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCccccccccccEEEccCCCCCCCCccccCCCCCCEEEcCCC
Q 000922 822 GLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDC 901 (1223)
Q Consensus 822 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~ 901 (1223)
+|+.|++++|.. ..+|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|....+|.. ..+|+.|+|++|
T Consensus 323 ~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N 392 (788)
T PRK15387 323 ELCKLWAYNNQL-TSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN 392 (788)
T ss_pred cccccccccCcc-cccccc---ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCC
Confidence 567777877654 345542 24789999999999998864 35788899999988777763 367999999999
Q ss_pred CCCCCchhhcCCCCCcEEeCCCCCCcccchhhcCCCCCCEEeccCCCCCCCCCCc---cCCCcEEeccCCc
Q 000922 902 DVMEIPQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPEL---PLRVKLLDASNCK 969 (1223)
Q Consensus 902 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l---~~~L~~L~~~~c~ 969 (1223)
.++.+|.. .++|+.|++++|.++.+|.. +.+|+.|++++|. ++.+|.. .++|+.|++++++
T Consensus 393 ~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 393 RLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 99998864 46899999999999999964 3578899999986 5678853 3578889998875
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=8.2e-21 Score=223.72 Aligned_cols=359 Identities=22% Similarity=0.235 Sum_probs=248.3
Q ss_pred hhhhcCCCCcceEEEecCCCCCCCCCccceeecCCccCCCCCeEEEEEcCCCCCCCCCCC-CCCCCceEecCCCCCcccc
Q 000922 598 SRAFVKMPNLRLLKFYVPGQITGSDMCTKVHLQQGLQYLPDELRYFHWYGYPLKALPFDF-SPENLIELNLPHSKVEQIW 676 (1223)
Q Consensus 598 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l~ 676 (1223)
.+...+.-+|+.|++.++. ...++..+..+ .+|+.|.++.|-+.++|... .+.+|++|+|.+|.+..+|
T Consensus 38 l~~~~~~v~L~~l~lsnn~---------~~~fp~~it~l-~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP 107 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQ---------ISSFPIQITLL-SHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLP 107 (1081)
T ss_pred hHHhhheeeeEEeeccccc---------cccCCchhhhH-HHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCc
Confidence 4455555568888888654 33444444333 47899999999999999765 7899999999999999999
Q ss_pred ccccccccceEEecCCCCCCcccCcccccccceeec-------------------ccCCcCCccCCCCCCCccE-EEccC
Q 000922 677 EGKKHFNNLVMLCLSHCESLRCFPQNIHFRTLIEID-------------------FSYCINLTEFPEISGNVIE-LDLKG 736 (1223)
Q Consensus 677 ~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~L~~L~-------------------Ls~c~~l~~~p~~~~~L~~-L~L~~ 736 (1223)
.++..+++|.+|++|.|......+....+..++.+. +..+.....++....+|+. |+|+.
T Consensus 108 ~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~ 187 (1081)
T KOG0618|consen 108 ASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRY 187 (1081)
T ss_pred hhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeeccc
Confidence 999999999999999987554333332444444444 4444444445555556666 77777
Q ss_pred CCcccccccccccCcc--------------------ceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcc
Q 000922 737 TAIEEIPSSIECLTKL--------------------EELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEK 796 (1223)
Q Consensus 737 ~~i~~lp~~i~~L~~L--------------------~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~ 796 (1223)
|.+.. ..+..+.+| +.|+.++|......+. ..-.+|++++++.+. +..+|++++.
T Consensus 188 N~~~~--~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~-l~~lp~wi~~ 262 (1081)
T KOG0618|consen 188 NEMEV--LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNN-LSNLPEWIGA 262 (1081)
T ss_pred chhhh--hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhh-hhcchHHHHh
Confidence 77662 122333333 3334444333322211 113456666666643 3445577777
Q ss_pred cccceeeecCCCCccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCccccc----------
Q 000922 797 MECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAY---------- 866 (1223)
Q Consensus 797 l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~---------- 866 (1223)
+.+|+.|....|.+..+|..+...++|+.|.+..| .+..+|..+..+++|+.|+|..|.|..+|..+..
T Consensus 263 ~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 263 CANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred cccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence 77777777777777777777777777777777665 3567777888888888898888888887764321
Q ss_pred ----------------cccccEEEccCCCCCC-CCccccCCCCCCEEEcCCCCCCCCchh-hcCCCCCcEEeCCCCCCcc
Q 000922 867 ----------------LDEVIELSFHGCRGLV-LPPILSGLSSLTKLDLSDCDVMEIPQD-IGRASSLEILDISGNDFDS 928 (1223)
Q Consensus 867 ----------------l~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~ 928 (1223)
+..|+.|.+.+|.... .-+.+.++.+|+.|+|++|.+.++|.. +.+++.|+.|+||||.++.
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~ 421 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT 421 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh
Confidence 1234455555555332 233467889999999999999999986 7889999999999999999
Q ss_pred cchhhcCCCCCCEEeccCCCCCCCCCCc--cCCCcEEeccCCcCcCcc
Q 000922 929 LPASIKQLSRLRELYLSNCSMLQSLPEL--PLRVKLLDASNCKQLQSL 974 (1223)
Q Consensus 929 lp~~l~~l~~L~~L~L~~~~~l~~lp~l--~~~L~~L~~~~c~~L~~l 974 (1223)
+|..+..++.|+.|...+| .+..+|++ .+.|+.+|++ |..|+.+
T Consensus 422 Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS-~N~L~~~ 467 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLS-CNNLSEV 467 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecc-cchhhhh
Confidence 9999999999999998888 46678864 4689999997 4455443
No 19
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.75 E-value=3.9e-18 Score=170.82 Aligned_cols=137 Identities=40% Similarity=0.712 Sum_probs=116.5
Q ss_pred cccEEEcCcc-cccccchHHHHHHHHhhCCCcccccCCCCCCCCccHHHHHHHhhcceEEEEeccCcccchhhHHHHHHH
Q 000922 65 KYDVFVSFRG-EDTRDNFTSHLVAALCRKKIKTFIDEQLDRGDDISPALLDAIERSKISVIIFSENYASSKWCLDELVKI 143 (1223)
Q Consensus 65 ~~dvFis~~g-~d~~~~f~~~l~~~L~~~gi~~f~d~~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i 143 (1223)
.|||||||++ +|+++.|+.+|..+|...|+.+|.|+....|.... +|.++|++|++.|+|+|++|..|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 67789999999999999999999998544333333 999999999999999999999999999999999
Q ss_pred HHHhhc-CCCEEEEEEeeeCCccccccccchhhHHHHHHhhhcCChhHHHHHHHHHHHHhc
Q 000922 144 LECKNK-NAQMVVPVFYHVDPSDVRKQTGSFGDAFVKHEKQFKGIPEKVQKWRVVLTEASN 203 (1223)
Q Consensus 144 ~~~~~~-~~~~v~Pvfy~v~ps~vr~q~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~~a~ 203 (1223)
+++... ..++||||+|+..|+++..+.+.++.++..+..+......+ +.|+.++..+++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence 998755 56799999999999999999999999998875444433333 689998887653
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.2e-17 Score=206.55 Aligned_cols=247 Identities=22% Similarity=0.390 Sum_probs=134.8
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCCceEecCCCCCccccccccccccceEEecCCCCCCcccCcccccccceeecccCC
Q 000922 637 PDELRYFHWYGYPLKALPFDFSPENLIELNLPHSKVEQIWEGKKHFNNLVMLCLSHCESLRCFPQNIHFRTLIEIDFSYC 716 (1223)
Q Consensus 637 ~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~L~~L~Ls~c 716 (1223)
.++...|+++++.++++|... +++|+.|+|++|+++.+|..+. .+|+.|+|++|. ++.+|...
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l------------- 239 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATL------------- 239 (754)
T ss_pred ccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhh-------------
Confidence 345567778888888887654 4578888888888887776543 467777777653 33333211
Q ss_pred cCCccCCCCCCCccEEEccCCCcccccccccccCccceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcc
Q 000922 717 INLTEFPEISGNVIELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEK 796 (1223)
Q Consensus 717 ~~l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~ 796 (1223)
..+|+.|+|++|.+..+|..+. .+|+.|++++| .+..+|..+. ++|+.|++++|... .+|..+.
T Consensus 240 ---------~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp- 303 (754)
T PRK15370 240 ---------PDTIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIR-TLPAHLP- 303 (754)
T ss_pred ---------hccccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccc-cCcccch-
Confidence 1145666666666666665543 35666666653 3445665443 35666666665433 3333222
Q ss_pred cccceeeecCCCCccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCccccccccccEEEcc
Q 000922 797 MECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFH 876 (1223)
Q Consensus 797 l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~ 876 (1223)
++|+.|++++|.++.+|..+. ++|+.|++++|... .+|..+. ++|+.|++++|.++.+|..+
T Consensus 304 -~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~l------------ 365 (754)
T PRK15370 304 -SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETL------------ 365 (754)
T ss_pred -hhHHHHHhcCCccccCCcccc--ccceeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhh------------
Confidence 356666666666666654332 45555555555432 2443332 34555555555554444322
Q ss_pred CCCCCCCCccccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccchhh----cCCCCCCEEeccCCCC
Q 000922 877 GCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASI----KQLSRLRELYLSNCSM 949 (1223)
Q Consensus 877 ~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L~~~~~ 949 (1223)
.++|+.|+|++|+++.+|..+. .+|+.|++++|++..+|..+ ..++++..|+|.+|+.
T Consensus 366 -------------p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 366 -------------PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -------------cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 1345555555555555555442 24555555555555555433 2235555555555553
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=1.4e-17 Score=206.20 Aligned_cols=220 Identities=22% Similarity=0.330 Sum_probs=153.1
Q ss_pred CccEEEccCCCcccccccccccCccceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecCC
Q 000922 728 NVIELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLES 807 (1223)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~ 807 (1223)
+|+.|+|++|.|+.+|..+. .+|+.|++++|. +..+|..+. .+|+.|+|++|... .+|..+. .+|+.|++++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcC
Confidence 55556666666666665443 366666666543 445565442 35666666666544 4454443 3677777777
Q ss_pred CCccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCccccccccccEEEccCCCCCCCCccc
Q 000922 808 TAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPIL 887 (1223)
Q Consensus 808 n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~p~~~ 887 (1223)
|.++.+|..+. ++|+.|++++|.. ..+|..+. .+|+.|++++|.++.+|..+. ++|+.|.+++|....+|..+
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l 344 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASL 344 (754)
T ss_pred CccCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCccccCChhh
Confidence 77777776553 4777777777643 34554432 467888888888887776543 67888888888877777655
Q ss_pred cCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccchhhcCCCCCCEEeccCCCCCCCCCCcc-------CCC
Q 000922 888 SGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPELP-------LRV 960 (1223)
Q Consensus 888 ~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~l~-------~~L 960 (1223)
. ++|+.|+|++|++..+|..+ .++|+.|+|++|+++.+|..+. .+|+.|++++|+ +..+|... +++
T Consensus 345 ~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l 417 (754)
T PRK15370 345 P--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNN-LVRLPESLPHFRGEGPQP 417 (754)
T ss_pred c--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccCchhHHHHhhcCCCc
Confidence 3 79999999999999999866 3799999999999999998764 379999999995 45777532 456
Q ss_pred cEEeccCCc
Q 000922 961 KLLDASNCK 969 (1223)
Q Consensus 961 ~~L~~~~c~ 969 (1223)
..|++.+++
T Consensus 418 ~~L~L~~Np 426 (754)
T PRK15370 418 TRIIVEYNP 426 (754)
T ss_pred cEEEeeCCC
Confidence 677777654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=2.8e-17 Score=157.17 Aligned_cols=172 Identities=31% Similarity=0.439 Sum_probs=142.8
Q ss_pred CCCCCCCCCCCCCceEecCCCCCccccccccccccceEEecCCCCCCcccCcccccccceeecccCCcCCccCCCCCCCc
Q 000922 650 LKALPFDFSPENLIELNLPHSKVEQIWEGKKHFNNLVMLCLSHCESLRCFPQNIHFRTLIEIDFSYCINLTEFPEISGNV 729 (1223)
Q Consensus 650 l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~L~~L~Ls~c~~l~~~p~~~~~L 729 (1223)
+..+|..|.+.+.+.|.|++|++..+|..+..+.+|++|++++
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n------------------------------------- 65 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN------------------------------------- 65 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-------------------------------------
Confidence 3556777788888888888888888887777766666665554
Q ss_pred cEEEccCCCcccccccccccCccceeeeccccccccCccccccCCcccEEeecCCcCcc-cchhhhcccccceeeecCCC
Q 000922 730 IELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFE-IFPEILEKMECLEYIDLEST 808 (1223)
Q Consensus 730 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~-~~p~~l~~l~~L~~L~L~~n 808 (1223)
|.|+++|.+++.|++|+.|++.- +.+..+|..|+.++.|+.|+|++|+..+ .+|..+-.|+.|+.|+++.|
T Consensus 66 -------nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 66 -------NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred -------chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence 56778899999999999999986 5678899999999999999999877554 58888889999999999999
Q ss_pred CccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCcccccc
Q 000922 809 AVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYL 867 (1223)
Q Consensus 809 ~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l 867 (1223)
.++-+|..++++++|+.|.+.+|.. -.+|..++.++.|++|.+.+|.++-+|+.++.+
T Consensus 138 dfe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 138 DFEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred CcccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 9999999999999999999998754 457888888888888888888888887766543
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=1.8e-16 Score=170.81 Aligned_cols=136 Identities=17% Similarity=0.145 Sum_probs=104.5
Q ss_pred ceeecCCccCCCCCeEEEEEcCCCCCCCCCCC--CCCCCceEecCCCCCccc-cccccccccceEEecCCCCCCcccCcc
Q 000922 626 KVHLQQGLQYLPDELRYFHWYGYPLKALPFDF--SPENLIELNLPHSKVEQI-WEGKKHFNNLVMLCLSHCESLRCFPQN 702 (1223)
Q Consensus 626 ~~~l~~~l~~l~~~Lr~L~~~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~~ 702 (1223)
...+.+.+..+|++...+.++.|.++++|... .+++|+.|+|++|+|+.+ |..++.+.+|..|-+-+++.++.+|..
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 34455566778899999999999999999764 789999999999999987 578899999999888887888888865
Q ss_pred c--ccccceeecccCCcCCccCCCCCC---CccEEEccCCCcccccc-cccccCccceeeecccc
Q 000922 703 I--HFRTLIEIDFSYCINLTEFPEISG---NVIELDLKGTAIEEIPS-SIECLTKLEELDLAYCR 761 (1223)
Q Consensus 703 ~--~~~~L~~L~Ls~c~~l~~~p~~~~---~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~ 761 (1223)
. .+..|+.|.+.-|..-....+.+. +|..|.+..|.+..++. ++..+..++++.+..|.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 4 777888887776543332222222 66777788888888877 77777778777776654
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=1.6e-16 Score=151.99 Aligned_cols=150 Identities=31% Similarity=0.530 Sum_probs=90.6
Q ss_pred CCcccEEeecCCcCcccchhhhcccccceeeecCCCCccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeec
Q 000922 773 LKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFA 852 (1223)
Q Consensus 773 L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l 852 (1223)
+.....|.|+.|. +..+|..+..+.+|+.|++.+|.++++|.+++.+++|+.|+++-| .+..+|..|+.++.|+.|++
T Consensus 32 ~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 4555555566543 334455566666666677777777777777777777777777654 34566777777777777777
Q ss_pred CCcccc--cCCccccccccccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccc
Q 000922 853 KRSAIS--KLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLP 930 (1223)
Q Consensus 853 ~~n~i~--~lp~~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 930 (1223)
..|++. .+|..|..+ ..|+-|.|++|.+.-+|.+++.+++|+.|.+..|++-++|
T Consensus 110 tynnl~e~~lpgnff~m-----------------------~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYM-----------------------TTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred cccccccccCCcchhHH-----------------------HHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc
Confidence 777665 344444444 4444445555555555555555555555555555555555
Q ss_pred hhhcCCCCCCEEeccCC
Q 000922 931 ASIKQLSRLRELYLSNC 947 (1223)
Q Consensus 931 ~~l~~l~~L~~L~L~~~ 947 (1223)
..++.+..|++|.+.+|
T Consensus 167 keig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGN 183 (264)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 55555555555555555
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=2.2e-15 Score=162.50 Aligned_cols=144 Identities=22% Similarity=0.266 Sum_probs=82.1
Q ss_pred EEcCCCCCCCCCCCCCCCCceEecCCCCCccccc-cccccccceEEecCCCCCCcccCcccccccceeecccCCcCCccC
Q 000922 644 HWYGYPLKALPFDFSPENLIELNLPHSKVEQIWE-GKKHFNNLVMLCLSHCESLRCFPQNIHFRTLIEIDFSYCINLTEF 722 (1223)
Q Consensus 644 ~~~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~~~~~~~L~~L~Ls~c~~l~~~ 722 (1223)
+.++-.++.+|.+. ++.-+++.|..|.|+.+|+ .++.+++||.||||+|..-..-
T Consensus 52 dCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~----------------------- 107 (498)
T KOG4237|consen 52 DCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA----------------------- 107 (498)
T ss_pred EccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcC-----------------------
Confidence 34455566677654 5678899999999999984 5688999999988886433222
Q ss_pred CCCCCCccEEEccCCCcccccccccccCccceeeeccccccccCccc-cccCCcccEEeecCCcCcccchhhhcccccce
Q 000922 723 PEISGNVIELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSS-ICKLKSLHLLCLYNCSNFEIFPEILEKMECLE 801 (1223)
Q Consensus 723 p~~~~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~ 801 (1223)
|..|..|..|..|-+-+++.++.+|.. |++|.+|+.|.+.-|...-...+.+..|++|.
T Consensus 108 --------------------p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 108 --------------------PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLS 167 (498)
T ss_pred --------------------hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcc
Confidence 224444444444444443444444432 34445555554444444444444555555555
Q ss_pred eeecCCCCcccccc-ccccCCCCcEEEccCC
Q 000922 802 YIDLESTAVKELPS-SVEQLKGLRELILEDC 831 (1223)
Q Consensus 802 ~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~~ 831 (1223)
.|.+..|.+..++. ++..+..++.+.+..|
T Consensus 168 lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 168 LLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hhcccchhhhhhccccccchhccchHhhhcC
Confidence 55555555555554 3445555555544433
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=2e-14 Score=165.91 Aligned_cols=209 Identities=22% Similarity=0.205 Sum_probs=100.7
Q ss_pred ccccccccCccceeeecccccc------ccCccccccCCcccEEeecCCcCcccchhhhccccc---ceeeecCCCCcc-
Q 000922 742 IPSSIECLTKLEELDLAYCRRL------KSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMEC---LEYIDLESTAVK- 811 (1223)
Q Consensus 742 lp~~i~~L~~L~~L~L~~c~~l------~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~---L~~L~L~~n~l~- 811 (1223)
++..+...++|++|+++++... ..++..+.++++|+.|++++|......+..+..+.+ |++|++++|.+.
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 3334444445555555543322 112233444555555555555554444444443333 555555555544
Q ss_pred ----ccccccccC-CCCcEEEccCCCCCC----CCccccCCCCCCceeecCCccccc-----CCccccccccccEEEccC
Q 000922 812 ----ELPSSVEQL-KGLRELILEDCSELS----KLPENLGNLKSLKRLFAKRSAISK-----LPSSIAYLDEVIELSFHG 877 (1223)
Q Consensus 812 ----~lp~~i~~l-~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~ 877 (1223)
.+...+..+ ++|+.|++++|.... .++..+..+++|++|++++|.++. ++..+..+++|++|++++
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence 122233444 555555555555432 122334444555555555555541 223333444566666655
Q ss_pred CCCCC-----CCccccCCCCCCEEEcCCCCCCCC-chhh-c----CCCCCcEEeCCCCCCc-----ccchhhcCCCCCCE
Q 000922 878 CRGLV-----LPPILSGLSSLTKLDLSDCDVMEI-PQDI-G----RASSLEILDISGNDFD-----SLPASIKQLSRLRE 941 (1223)
Q Consensus 878 ~~~~~-----~p~~~~~l~~L~~L~L~~~~l~~l-p~~l-~----~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~ 941 (1223)
|.... ++..+..+++|++|++++|.+.+. +..+ . ..+.|+.|++++|.++ .+...+..+++|++
T Consensus 203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~ 282 (319)
T cd00116 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282 (319)
T ss_pred CccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence 54321 223344556666666666665531 1111 1 1356666666666664 23344455566666
Q ss_pred EeccCCCCC
Q 000922 942 LYLSNCSML 950 (1223)
Q Consensus 942 L~L~~~~~l 950 (1223)
|++++|...
T Consensus 283 l~l~~N~l~ 291 (319)
T cd00116 283 LDLRGNKFG 291 (319)
T ss_pred EECCCCCCc
Confidence 666666443
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=2.2e-14 Score=165.54 Aligned_cols=271 Identities=21% Similarity=0.167 Sum_probs=173.2
Q ss_pred eEecCCCCCc-ccc-ccccccccceEEecCCCCCCc----ccCc-ccccccceeecccCCcCCccCCCCCCCccEEEccC
Q 000922 664 ELNLPHSKVE-QIW-EGKKHFNNLVMLCLSHCESLR----CFPQ-NIHFRTLIEIDFSYCINLTEFPEISGNVIELDLKG 736 (1223)
Q Consensus 664 ~L~L~~~~i~-~l~-~~~~~l~~L~~L~Ls~~~~l~----~~p~-~~~~~~L~~L~Ls~c~~l~~~p~~~~~L~~L~L~~ 736 (1223)
.|+|..+.++ .-| ..+..+.+|+.|++++|.... .++. ....++|+.|+++++..-. . .
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~-------------~ 67 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-I-------------P 67 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-c-------------c
Confidence 3566666665 222 334566778888888875321 1221 1234456666665543210 0 0
Q ss_pred CCcccccccccccCccceeeeccccccccCccccccCCc---ccEEeecCCcCcc----cchhhhccc-ccceeeecCCC
Q 000922 737 TAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKS---LHLLCLYNCSNFE----IFPEILEKM-ECLEYIDLEST 808 (1223)
Q Consensus 737 ~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~---L~~L~L~~c~~~~----~~p~~l~~l-~~L~~L~L~~n 808 (1223)
..+..++..+..+++|+.|++++|......+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|
T Consensus 68 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 68 RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 111234455666778888888877665555555554544 8888888876552 233445556 77888888888
Q ss_pred Ccc-----ccccccccCCCCcEEEccCCCCCC----CCccccCCCCCCceeecCCccccc-----CCccccccccccEEE
Q 000922 809 AVK-----ELPSSVEQLKGLRELILEDCSELS----KLPENLGNLKSLKRLFAKRSAISK-----LPSSIAYLDEVIELS 874 (1223)
Q Consensus 809 ~l~-----~lp~~i~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~ 874 (1223)
.++ .++..+..+++|+.|++++|...+ .++..+..+++|+.|++++|.+.. ++..+..+++|+.|+
T Consensus 148 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 148 RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227 (319)
T ss_pred cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEe
Confidence 776 344456667788888888876553 233445566788888888887752 344566678888888
Q ss_pred ccCCCCCC--CCc---c-ccCCCCCCEEEcCCCCCCC-----CchhhcCCCCCcEEeCCCCCCccc-----chhhcCC-C
Q 000922 875 FHGCRGLV--LPP---I-LSGLSSLTKLDLSDCDVME-----IPQDIGRASSLEILDISGNDFDSL-----PASIKQL-S 937 (1223)
Q Consensus 875 l~~~~~~~--~p~---~-~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~l-----p~~l~~l-~ 937 (1223)
+++|.... +.. . ....+.|++|++++|.+++ +...+..+++|+.|++++|.+..- ...+... +
T Consensus 228 ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~ 307 (319)
T cd00116 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGN 307 (319)
T ss_pred cCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCC
Confidence 88887442 111 1 1135799999999999872 455667779999999999999843 3345555 7
Q ss_pred CCCEEeccCCC
Q 000922 938 RLRELYLSNCS 948 (1223)
Q Consensus 938 ~L~~L~L~~~~ 948 (1223)
.|++|++.+|+
T Consensus 308 ~~~~~~~~~~~ 318 (319)
T cd00116 308 ELESLWVKDDS 318 (319)
T ss_pred chhhcccCCCC
Confidence 89999998885
No 28
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.36 E-value=3.5e-13 Score=126.61 Aligned_cols=87 Identities=32% Similarity=0.587 Sum_probs=75.0
Q ss_pred EEEcCcccccccchHHHHHHHHhhCCCcccccCCCCCCCCccHHHHHHHhhcceEEEEeccCcccchhhHHHHHHHHHHh
Q 000922 68 VFVSFRGEDTRDNFTSHLVAALCRKKIKTFIDEQLDRGDDISPALLDAIERSKISVIIFSENYASSKWCLDELVKILECK 147 (1223)
Q Consensus 68 vFis~~g~d~~~~f~~~l~~~L~~~gi~~f~d~~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~ 147 (1223)
|||||+++| +.|+.+|.+.|+++|+++|.|.++..|+.+.+++.++|++|+..|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 6799999999999999999999899999999999999999999999999999999999999988843
Q ss_pred hcCCCEEEEEEee
Q 000922 148 NKNAQMVVPVFYH 160 (1223)
Q Consensus 148 ~~~~~~v~Pvfy~ 160 (1223)
.++.|+||..+
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 44569999843
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=1.3e-10 Score=153.72 Aligned_cols=294 Identities=15% Similarity=0.167 Sum_probs=183.7
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRE 314 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~ 314 (1223)
+|....++|-|..-++.+.. ....+++.|.|++|.||||++..+.++ ++.++|+. +... ..+...+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~~--d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDES--DNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCcc--cCCHHHHHH
Confidence 56666788888765555432 246789999999999999999998753 33577874 3221 123334444
Q ss_pred HHHHHHhhhccCc----------CC-CCc---hHHHHHHHh--cCeEEEEecCCCCHH------HHHHHhcCCCCCCCCC
Q 000922 315 RLYSEILEETLKI----------RT-PSV---PKCIKERLQ--QMKVFVVLDDVNKPE------QLDYLAGGLDRFGLGS 372 (1223)
Q Consensus 315 ~ll~~l~~~~~~~----------~~-~~~---~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs 372 (1223)
.++..+....... .. ... ...+...+. +.+++|||||+...+ .+..+... ..++-
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~ 153 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENL 153 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCe
Confidence 4444443111110 00 111 112222222 679999999996532 23333333 35667
Q ss_pred EEEEEeCChhhhhh--c-CCCceEEec----CCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhh
Q 000922 373 RVVVTSRDRQVFDK--C-RVDKIYEVE----GLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKVLGSF 445 (1223)
Q Consensus 373 rIIiTTR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~ 445 (1223)
++|||||...-... . -.....++. .|+.+|+.++|....... -..+.+.++.+.++|+|+++..++..
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHH
Confidence 89899998432211 1 122355666 899999999998764221 12245678999999999999998877
Q ss_pred hccCCHHHHHHHHhhhccCCCCcHHhHHHH-hHhcccHhHHhHhheeecccCCCCHHHHHHHhcCCCCHHhhHHHHHhcc
Q 000922 446 LQRKCKLQWENALKNLTRISDPDIYDMLKI-SYNELKQEEKSIFLDIACFFKGDDKDFMTRIQDDPESVHYGLNVLVDKS 524 (1223)
Q Consensus 446 L~~~~~~~w~~~l~~l~~~~~~~i~~~L~~-sy~~L~~~~k~~fl~~a~f~~~~~~~~~~~~l~~~~~~~~~l~~L~~~s 524 (1223)
+...... .......+...+...+.+.+.- .++.||++.+++++.+|+++ .++.+....+. +...+...++.|.+.+
T Consensus 229 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~-~~~~~~~~L~~l~~~~ 305 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVT-GEENGQMRLEELERQG 305 (903)
T ss_pred HhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHc-CCCcHHHHHHHHHHCC
Confidence 7543210 0111222222223446655443 48999999999999999986 55655555444 3446788899999999
Q ss_pred ceEE-ec--CCeEEecHHHHHHHHHHHhhc
Q 000922 525 LVAL-SC--NNKLQIHDLLQEFGREIVRQQ 551 (1223)
Q Consensus 525 Li~~-~~--~~~~~mHdll~~~~~~i~~~~ 551 (1223)
++.. .+ ...|.+|++++++.+.....+
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 9653 22 236889999999999877443
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=4.1e-12 Score=143.53 Aligned_cols=181 Identities=30% Similarity=0.523 Sum_probs=121.5
Q ss_pred ccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecCCCCccccccccccCCCCcEEEccCCCCCCCCccccCC
Q 000922 764 KSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGN 843 (1223)
Q Consensus 764 ~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~ 843 (1223)
..+|..++.+..|+.|.|+.|. ...+|..+.++..|.+|+|+.|.+..+|..++.|+ |+.|-+++| +++.+|+.++.
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~ 164 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGL 164 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCccccc
Confidence 3344444444444444444322 23344455555555555666666666666655554 555555543 44566666666
Q ss_pred CCCCceeecCCcccccCCccccccccccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCC
Q 000922 844 LKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISG 923 (1223)
Q Consensus 844 l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~ 923 (1223)
+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|....+|+.+..| .|..||++.|+++.+|..+..+..|++|-|.+
T Consensus 165 ~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred chhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeecc
Confidence 67777777777777777777777777777777777777777766643 48888999999999999999999999999999
Q ss_pred CCCcccchhhc---CCCCCCEEeccCCC
Q 000922 924 NDFDSLPASIK---QLSRLRELYLSNCS 948 (1223)
Q Consensus 924 n~l~~lp~~l~---~l~~L~~L~L~~~~ 948 (1223)
|.+++-|..|. ...-.++|+..-|+
T Consensus 244 NPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 244 NPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CCCCCChHHHHhccceeeeeeecchhcc
Confidence 99998887663 33445788888774
No 31
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.10 E-value=1.4e-08 Score=120.72 Aligned_cols=282 Identities=14% Similarity=0.064 Sum_probs=164.9
Q ss_pred CCCCCCceehhhHHHHHHHhhhcC--CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCc--ceeeeechhhhccCCHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVG--LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEG--RCFMANVREESERGGLVY 311 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~l~~ 311 (1223)
...++.++||+.++++|...|... ......+.|+|++|+|||++++.+++.+...... .+++. . ....+...
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~---~~~~~~~~ 101 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-C---QIDRTRYA 101 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-C---CcCCCHHH
Confidence 346678999999999999988432 2334567899999999999999999987665422 33332 1 12234556
Q ss_pred HHHHHHHHHhhhccCcCC--CC-chHHHHHHHh--cCeEEEEecCCCCHH------HHHHHhcCCCCCCCCCE--EEEEe
Q 000922 312 LRERLYSEILEETLKIRT--PS-VPKCIKERLQ--QMKVFVVLDDVNKPE------QLDYLAGGLDRFGLGSR--VVVTS 378 (1223)
Q Consensus 312 l~~~ll~~l~~~~~~~~~--~~-~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsr--IIiTT 378 (1223)
+..+++.++......... .. ....+.+.++ +++++||||+++... .+..+...... .++++ ||.++
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~ 180 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEE
Confidence 677777776542211111 11 1455555554 456899999998753 34444433222 23334 66666
Q ss_pred CChhhhhhcC-------CCceEEecCCCHHHHHHHHHHhhhc---CCCCCh-hHHHHHHHHHHHhCCCchHHHHHHhhh-
Q 000922 379 RDRQVFDKCR-------VDKIYEVEGLNQNEALEHFSNYAFR---QNICPK-DFLVLSERIVFYANGNPLALKVLGSFL- 446 (1223)
Q Consensus 379 R~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~---~~~~~~-~~~~l~~~i~~~~~GlPLal~~lg~~L- 446 (1223)
.+..+..... ....+.+++++.++..+++..++-. .....+ ..+.+++......|..+.|+.++-...
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6654332211 1246789999999999999887632 222222 223333333333455777777654322
Q ss_pred -c---cC---CHHHHHHHHhhhccCCCCcHHhHHHHhHhcccHhHHhHhheeecccC----CCCHHHHH----HHhcCCC
Q 000922 447 -Q---RK---CKLQWENALKNLTRISDPDIYDMLKISYNELKQEEKSIFLDIACFFK----GDDKDFMT----RIQDDPE 511 (1223)
Q Consensus 447 -~---~~---~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~----~~~~~~~~----~~l~~~~ 511 (1223)
. +. +.+.+..+++... .....-.+..||.++|..+..++-..+ ......+. .+...-+
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 11 4556666666552 223445688999999988877664432 12222211 1111111
Q ss_pred -------CHHhhHHHHHhccceEEe
Q 000922 512 -------SVHYGLNVLVDKSLVALS 529 (1223)
Q Consensus 512 -------~~~~~l~~L~~~sLi~~~ 529 (1223)
.....+..|.+.++|...
T Consensus 334 ~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 YEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 234568889999999864
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=3.9e-11 Score=151.51 Aligned_cols=247 Identities=27% Similarity=0.363 Sum_probs=165.0
Q ss_pred CccEEEccCCCcccccccccccCccceeeeccccc-cccCccc-cccCCcccEEeecCCcCcccchhhhcccccceeeec
Q 000922 728 NVIELDLKGTAIEEIPSSIECLTKLEELDLAYCRR-LKSLPSS-ICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDL 805 (1223)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~-l~~lp~~-i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L 805 (1223)
..+...+-+|.+..++.+..+- +|++|-+.+|.. +..++.. |..++.|++|+|++|...+.+|..++.+-+|++|++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred heeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 4555666666666666655433 688888877653 4445443 666888888888888888888888888888888888
Q ss_pred CCCCccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCccccc---CCccccccccccEEEccCCCCCC
Q 000922 806 ESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISK---LPSSIAYLDEVIELSFHGCRGLV 882 (1223)
Q Consensus 806 ~~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~---lp~~~~~l~~L~~L~l~~~~~~~ 882 (1223)
+++.+..+|.++++|..|.+|++..+..+..+|..+..|++|++|.+-...... .-..+..+.+|+.+....... .
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~ 681 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-L 681 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-H
Confidence 888888889888888899999888888777777777778888888876654221 122334455555555543332 1
Q ss_pred CCccccCCCC----CCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccch-h-----hc-CCCCCCEEeccCCCCCC
Q 000922 883 LPPILSGLSS----LTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPA-S-----IK-QLSRLRELYLSNCSMLQ 951 (1223)
Q Consensus 883 ~p~~~~~l~~----L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~-----l~-~l~~L~~L~L~~~~~l~ 951 (1223)
+-.-+..+.. .+.+.+.+|.....+..++.+.+|+.|.+.++.+.+... + .. .+++|..+.+.+|..++
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r 761 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR 761 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc
Confidence 1111122222 223444445555666777788888888888887764321 1 11 15566777777777666
Q ss_pred CCC--CccCCCcEEeccCCcCcCccCC
Q 000922 952 SLP--ELPLRVKLLDASNCKQLQSLPE 976 (1223)
Q Consensus 952 ~lp--~l~~~L~~L~~~~c~~L~~l~~ 976 (1223)
.+- ..+++|+.|.+..|+.++.+..
T Consensus 762 ~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 762 DLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccchhhccCcccEEEEecccccccCCC
Confidence 555 3678899999988888776653
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=2.4e-10 Score=135.83 Aligned_cols=181 Identities=31% Similarity=0.458 Sum_probs=110.6
Q ss_pred CccEEEccCCCcccccccccccC-ccceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecC
Q 000922 728 NVIELDLKGTAIEEIPSSIECLT-KLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLE 806 (1223)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~ 806 (1223)
.+..|++.++.++++|...+.+. +|+.|++++ +.+..+|..+..+++|+.|++++|... .+|...+.+++|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence 45666666666666666666663 666666665 334455444555556666655554432 233333345555555555
Q ss_pred CCCccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCccccccccccEEEccCCCCCCCCcc
Q 000922 807 STAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPI 886 (1223)
Q Consensus 807 ~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~p~~ 886 (1223)
+|.+..+|..+..+.+ |++|.+++|.+...+..+..+.++..|.+.++....++..
T Consensus 195 ~N~i~~l~~~~~~~~~------------------------L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 195 GNKISDLPPEIELLSA------------------------LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred CCccccCchhhhhhhh------------------------hhhhhhcCCcceecchhhhhcccccccccCCceeeeccch
Confidence 5555555554444444 4555555554445555555566666666555555555666
Q ss_pred ccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccchhhcC
Q 000922 887 LSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASIKQ 935 (1223)
Q Consensus 887 ~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 935 (1223)
+..+++|+.|++++|.+++++. ++.+.+|+.|++++|.+..++.....
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred hccccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence 7777888888888888888777 78888888888888888766554433
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=1.4e-11 Score=139.38 Aligned_cols=190 Identities=27% Similarity=0.382 Sum_probs=165.9
Q ss_pred CcccEEeecCCcCcccchhhhcccccceeeecCCCCccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecC
Q 000922 774 KSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAK 853 (1223)
Q Consensus 774 ~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~ 853 (1223)
.--...+|+.|. ...+|..+..+..|+.|.|..|.+..+|..++++..|+.|+|+.|. +..+|..+..|+ |+.|-++
T Consensus 75 tdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 75 TDTVFADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred cchhhhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEe
Confidence 333456677754 4568888999999999999999999999999999999999999875 567788887775 8999999
Q ss_pred CcccccCCccccccccccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccchhh
Q 000922 854 RSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASI 933 (1223)
Q Consensus 854 ~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l 933 (1223)
+|+++.+|..++.+..|..|+.+.|....+|+.++++.+|+.|++..|++..+|..+..| .|..||+|.|++..||.++
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhh
Confidence 999999999999999999999999999999999999999999999999999999999854 6899999999999999999
Q ss_pred cCCCCCCEEeccCCCCCCCCCC------ccCCCcEEeccCC
Q 000922 934 KQLSRLRELYLSNCSMLQSLPE------LPLRVKLLDASNC 968 (1223)
Q Consensus 934 ~~l~~L~~L~L~~~~~l~~lp~------l~~~L~~L~~~~c 968 (1223)
.++..|++|-|.+|+ |++-|. ...-.++|++.-|
T Consensus 231 r~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 999999999999997 455552 2234677888777
No 35
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.05 E-value=2.3e-09 Score=122.60 Aligned_cols=271 Identities=15% Similarity=0.138 Sum_probs=149.9
Q ss_pred CCceehhhHHHHHHHhhhcC---CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHH
Q 000922 240 EGLVGIYSRIEQIKSLLCVG---LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERL 316 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~l 316 (1223)
.+|||++..+++|..++... ......+.++|++|+|||+||+++++.+...+. +..... ......+.. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~---~~~~~~l~~-~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPA---LEKPGDLAA-I 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccch---hcCchhHHH-H
Confidence 57999999999998888532 233556889999999999999999997754321 111100 001111111 1
Q ss_pred HHHHhhhcc----CcC--CCCchHHHHHHHhcCeEEEEecCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhc--C
Q 000922 317 YSEILEETL----KIR--TPSVPKCIKERLQQMKVFVVLDDVNKPEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKC--R 388 (1223)
Q Consensus 317 l~~l~~~~~----~~~--~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~--~ 388 (1223)
+..+..... ... .....+.+...+.+.+..+|+|+..+..++... ..+.+-|..||+...+.... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhh
Confidence 111110000 000 000122233333444444444444333322211 12345566677765443321 1
Q ss_pred CCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhhccCCHHHHHHHH-hhhccCCCC
Q 000922 389 VDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKVLGSFLQRKCKLQWENAL-KNLTRISDP 467 (1223)
Q Consensus 389 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l-~~l~~~~~~ 467 (1223)
....+++++++.+|..+++.+.+...... -..+....|++.|+|.|-.+..++..+ |..+. ..-.....+
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~ 220 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRD 220 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHH
Confidence 23468999999999999999887543221 223566889999999997655554432 11110 000001111
Q ss_pred ---cHHhHHHHhHhcccHhHHhHhh-eeecccC-CCCHHHHHHHhcCCC-CHHhhHH-HHHhccceEEecCCe
Q 000922 468 ---DIYDMLKISYNELKQEEKSIFL-DIACFFK-GDDKDFMTRIQDDPE-SVHYGLN-VLVDKSLVALSCNNK 533 (1223)
Q Consensus 468 ---~i~~~L~~sy~~L~~~~k~~fl-~~a~f~~-~~~~~~~~~~l~~~~-~~~~~l~-~L~~~sLi~~~~~~~ 533 (1223)
.....+...|.+|+..++..+. .++.+.. +...+.+...+.... .+...++ .|++++||.....|+
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence 1222245568889888887766 4455643 255666777776655 6667678 699999997554443
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=2.2e-10 Score=136.19 Aligned_cols=198 Identities=33% Similarity=0.457 Sum_probs=154.5
Q ss_pred eeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcccc-cceeeecCCCCccccccccccCCCCcEEEccCCC
Q 000922 754 ELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKME-CLEYIDLESTAVKELPSSVEQLKGLRELILEDCS 832 (1223)
Q Consensus 754 ~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~-~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~ 832 (1223)
.|++..+.....+. .+..++.++.|.+.++.. ..+|.....+. +|+.|++++|.+..+|..++.+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCccc-ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 45555533322222 244456677777766443 34455555553 7888888888888887778888888888888875
Q ss_pred CCCCCccccCCCCCCceeecCCcccccCCccccccccccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCCCCchhhcC
Q 000922 833 ELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGR 912 (1223)
Q Consensus 833 ~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l~~ 912 (1223)
. ..+|...+.+++|+.|++++|.+..+|..+..+..|++|.+++|.....+..+..+.++..|.+.+|.+..++..++.
T Consensus 175 l-~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 253 (394)
T COG4886 175 L-SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN 253 (394)
T ss_pred h-hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcc
Confidence 4 455555558889999999999999999988888889999999998777788888999999999999999888888999
Q ss_pred CCCCcEEeCCCCCCcccchhhcCCCCCCEEeccCCCCCCCCCC
Q 000922 913 ASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPE 955 (1223)
Q Consensus 913 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 955 (1223)
+++|+.|++++|.++.++. +..+.+|+.|+++++.....+|.
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 9999999999999999987 88999999999999977666553
No 37
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.00 E-value=1.5e-09 Score=124.77 Aligned_cols=275 Identities=13% Similarity=0.122 Sum_probs=151.1
Q ss_pred CCCCCCceehhhHHHHHHHhhhc---CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCV---GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
|...++|+|++..++.+..++.. .....+.+.|+|++|+||||+|+.+++.+...+. ........ ....
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~~~~---~~~~- 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGPALE---KPGD- 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEeccccc---ChHH-
Confidence 45678899999999999887753 2334567889999999999999999998754321 11110000 0001
Q ss_pred HHHHHHHHhhhcc-CcCC-----CCchHHHHHHHhcCeEEEEecCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh
Q 000922 313 RERLYSEILEETL-KIRT-----PSVPKCIKERLQQMKVFVVLDDVNKPEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDK 386 (1223)
Q Consensus 313 ~~~ll~~l~~~~~-~~~~-----~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 386 (1223)
...++..+..... -+++ ....+.+...+.+.+..+|+|+..+..++.. ...+.+-|..|||...+...
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~------~l~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL------DLPPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee------cCCCceEEeecCCcccCCHH
Confidence 1111111100000 0000 0001122222233333333333322221110 01224455666665444332
Q ss_pred c--CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhhccCCHHHHHHHHhhhccC
Q 000922 387 C--RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKVLGSFLQRKCKLQWENALKNLTRI 464 (1223)
Q Consensus 387 ~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~~~ 464 (1223)
. .....++++.++.++..+++.+.+...+.. -..+.+..|++.|+|.|-.+..+...+. .|.... .-...
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~-~~~~I 238 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK-GDGVI 238 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc-CCCCC
Confidence 1 123468999999999999999887654322 2235678999999999965444443221 111110 00111
Q ss_pred CCC---cHHhHHHHhHhcccHhHHhHhh-eeecccCC-CCHHHHHHHhcCCC-CHHhhHH-HHHhccceEEecCC
Q 000922 465 SDP---DIYDMLKISYNELKQEEKSIFL-DIACFFKG-DDKDFMTRIQDDPE-SVHYGLN-VLVDKSLVALSCNN 532 (1223)
Q Consensus 465 ~~~---~i~~~L~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~~~~~l~~~~-~~~~~l~-~L~~~sLi~~~~~~ 532 (1223)
... ...+.+...+..|++.++..+. .+..|..+ ...+.+...+.... .++..++ .|++.+||.....|
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCch
Confidence 111 1223345667888888888775 55566543 56677777776655 6666777 89999999755444
No 38
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.99 E-value=1.7e-09 Score=118.61 Aligned_cols=195 Identities=22% Similarity=0.223 Sum_probs=102.1
Q ss_pred ceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHH------HHH
Q 000922 242 LVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYL------RER 315 (1223)
Q Consensus 242 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l------~~~ 315 (1223)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.....-...+|+......... .+... ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 789999999999998654 346889999999999999999999875443345555432221110 11111 111
Q ss_pred HHHHHhhhccCc-----------CCCCchHHHHHHHh--cCeEEEEecCCCCHH-----------HHHHHhcCCCCCCCC
Q 000922 316 LYSEILEETLKI-----------RTPSVPKCIKERLQ--QMKVFVVLDDVNKPE-----------QLDYLAGGLDRFGLG 371 (1223)
Q Consensus 316 ll~~l~~~~~~~-----------~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~g 371 (1223)
+...+....... ........+.+.+. +++++||+||++... .+..+...... ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 111221111110 01111333444444 346999999997655 12222222222 233
Q ss_pred CEEEEEeCChhhhhh--------cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 000922 372 SRVVVTSRDRQVFDK--------CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKV 441 (1223)
Q Consensus 372 srIIiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 441 (1223)
-.+|+++....+... .+....+.+++|+.+++++++...+-.. ..-+.-.+..++|...+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 345555554444332 2333469999999999999999865332 11012345569999999999988764
No 39
>PF05729 NACHT: NACHT domain
Probab=98.96 E-value=4e-09 Score=108.84 Aligned_cols=143 Identities=21% Similarity=0.337 Sum_probs=86.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccC-----cceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFE-----GRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKE 338 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-----~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 338 (1223)
|++.|+|.+|+||||+++.++.++..... ...++...+..........+...+.......... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 58999999999999999999997766542 2333334444333222223333333222111111 1111222
Q ss_pred -HHhcCeEEEEecCCCCHHH---------HHHHh-cCCCC-CCCCCEEEEEeCChhh---hhhcCCCceEEecCCCHHHH
Q 000922 339 -RLQQMKVFVVLDDVNKPEQ---------LDYLA-GGLDR-FGLGSRVVVTSRDRQV---FDKCRVDKIYEVEGLNQNEA 403 (1223)
Q Consensus 339 -~L~~kr~LlVLDdv~~~~~---------~~~l~-~~~~~-~~~gsrIIiTTR~~~v---~~~~~~~~~~~l~~L~~~ea 403 (1223)
..+.++++||||++++... +..+. .-+.. ..++.+||||+|.... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2257899999999976433 11222 11221 3578999999999766 23334446899999999999
Q ss_pred HHHHHHhh
Q 000922 404 LEHFSNYA 411 (1223)
Q Consensus 404 ~~Lf~~~a 411 (1223)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99997764
No 40
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.96 E-value=1.2e-07 Score=111.60 Aligned_cols=283 Identities=17% Similarity=0.111 Sum_probs=160.3
Q ss_pred CCCCCCceehhhHHHHHHHhhhc--CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccC------cceeeeechhhhccC
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCV--GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFE------GRCFMANVREESERG 307 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~~~~~ 307 (1223)
...++.++||+.++++|...|.. .......+.|+|++|+|||++++++++.+....+ ..+|+.. ....
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~----~~~~ 86 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC----QILD 86 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC----CCCC
Confidence 34567899999999999998863 1233457899999999999999999997654332 1334422 1223
Q ss_pred CHHHHHHHHHHHHhh--hccCcCCCC---chHHHHHHHh--cCeEEEEecCCCCHH-----HHHHHhcCCCC-CC--CCC
Q 000922 308 GLVYLRERLYSEILE--ETLKIRTPS---VPKCIKERLQ--QMKVFVVLDDVNKPE-----QLDYLAGGLDR-FG--LGS 372 (1223)
Q Consensus 308 ~l~~l~~~ll~~l~~--~~~~~~~~~---~~~~l~~~L~--~kr~LlVLDdv~~~~-----~~~~l~~~~~~-~~--~gs 372 (1223)
....+...++.++.. ......... ....+.+.+. +++++||||+++... .+..+.....+ .. ..-
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 445667777777642 111111111 1344445553 568999999998762 13333322111 11 223
Q ss_pred EEEEEeCChhhhhhc------C-CCceEEecCCCHHHHHHHHHHhhh---cCCCCChhHHHHHHHHHHHhCCCch-HHHH
Q 000922 373 RVVVTSRDRQVFDKC------R-VDKIYEVEGLNQNEALEHFSNYAF---RQNICPKDFLVLSERIVFYANGNPL-ALKV 441 (1223)
Q Consensus 373 rIIiTTR~~~v~~~~------~-~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~l~~~i~~~~~GlPL-al~~ 441 (1223)
.+|.+|.+....... . ....+++++++.+|..+++..++- ......++..+.+.+++....|.|- |+..
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 455555544322111 0 124688999999999999998863 2222233444455667777778884 4333
Q ss_pred HHhhh--c---c---CCHHHHHHHHhhhccCCCCcHHhHHHHhHhcccHhHHhHhheeecccC-C---CCHHHH-H---H
Q 000922 442 LGSFL--Q---R---KCKLQWENALKNLTRISDPDIYDMLKISYNELKQEEKSIFLDIACFFK-G---DDKDFM-T---R 505 (1223)
Q Consensus 442 lg~~L--~---~---~~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~-~---~~~~~~-~---~ 505 (1223)
+-... . + -+.+..+.+.+.+. .....-+...||.++|.++..++..-+ + .....+ . .
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 22211 1 1 14445555555442 233445677899988877776653322 1 111111 1 1
Q ss_pred HhcCCC-------CHHhhHHHHHhccceEEe
Q 000922 506 IQDDPE-------SVHYGLNVLVDKSLVALS 529 (1223)
Q Consensus 506 ~l~~~~-------~~~~~l~~L~~~sLi~~~ 529 (1223)
+.+..+ .....+..|...|+|...
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 111111 344567889999999875
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=2.6e-10 Score=119.10 Aligned_cols=132 Identities=23% Similarity=0.285 Sum_probs=92.1
Q ss_pred hhcccccceeeecCCCCccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCccccccccccE
Q 000922 793 ILEKMECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIE 872 (1223)
Q Consensus 793 ~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~ 872 (1223)
.+...+.|++|||++|.|+.+..++.-++.++.|+++.|..... ..+..+.+|+.|++++|.++++..+
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gw--------- 347 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGW--------- 347 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhh---------
Confidence 34455678888888888888888887788888888887765442 2355666666666666666555433
Q ss_pred EEccCCCCCCCCccccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccch--hhcCCCCCCEEeccCCCCC
Q 000922 873 LSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPA--SIKQLSRLRELYLSNCSML 950 (1223)
Q Consensus 873 L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~~~~l 950 (1223)
-..+-+.+.|.|++|.+.++ .+++.+-+|..||+++|+|..+.+ .|+++|.|+.|.|.+||..
T Consensus 348 --------------h~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 348 --------------HLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred --------------HhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 33455566666666655544 356777888888888888886654 6888888998888888754
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.3e-10 Score=126.14 Aligned_cols=202 Identities=23% Similarity=0.259 Sum_probs=119.8
Q ss_pred cccCccceeeeccccccccCc--cccccCCcccEEeecCCcCcc--cchhhhcccccceeeecCCCCccccccc--cccC
Q 000922 747 ECLTKLEELDLAYCRRLKSLP--SSICKLKSLHLLCLYNCSNFE--IFPEILEKMECLEYIDLESTAVKELPSS--VEQL 820 (1223)
Q Consensus 747 ~~L~~L~~L~L~~c~~l~~lp--~~i~~L~~L~~L~L~~c~~~~--~~p~~l~~l~~L~~L~L~~n~l~~lp~~--i~~l 820 (1223)
.++.+|+...|.+|. ....+ .-...|++++.|+|+.|-... .+-.....+++|+.|+|+.|.+...-++ -..+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 345566666666532 23333 134456677777777654333 2334566777777777777776643332 2356
Q ss_pred CCCcEEEccCCCCCC-CCccccCCCCCCceeecCCcc-cccCCccccccccccEEEccCCCCCCCC--ccccCCCCCCEE
Q 000922 821 KGLRELILEDCSELS-KLPENLGNLKSLKRLFAKRSA-ISKLPSSIAYLDEVIELSFHGCRGLVLP--PILSGLSSLTKL 896 (1223)
Q Consensus 821 ~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~l~~n~-i~~lp~~~~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L 896 (1223)
++|+.|.|+.|.... .+-..+..+++|+.|++..|. +..-.....-+..|+.|+|++|+...++ ...+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 677788888776542 222334566777777777773 3322233344556777777777766655 345667777777
Q ss_pred EcCCCCCCC--Cchh-----hcCCCCCcEEeCCCCCCcccch--hhcCCCCCCEEeccCCCC
Q 000922 897 DLSDCDVME--IPQD-----IGRASSLEILDISGNDFDSLPA--SIKQLSRLRELYLSNCSM 949 (1223)
Q Consensus 897 ~L~~~~l~~--lp~~-----l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~~~~ 949 (1223)
+++.|.+.+ +|+. ...+++|++|+++.|++...+. .+..+++|+.|.+..|+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 777777764 3333 3456777777777777765552 345566666666555543
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=4.2e-10 Score=117.62 Aligned_cols=176 Identities=18% Similarity=0.173 Sum_probs=126.7
Q ss_pred cccCCcccEEeecCCcCcccchhhhcccccceeeecCCCCccccccccccCCCCcEEEccC-CCCCCCCccccCCCCCCc
Q 000922 770 ICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPSSVEQLKGLRELILED-CSELSKLPENLGNLKSLK 848 (1223)
Q Consensus 770 i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~ 848 (1223)
+.-+.+|+.+.++.|.-- .+-.....-+.|+++...++.+...|. +-..+.+..+.-.. ....+.+...+...+.|+
T Consensus 210 l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt 287 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPS-LLPETILADPSGSEPSTSNGSALVSADTWQELT 287 (490)
T ss_pred hHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccccccc-ccchhhhcCccCCCCCccCCceEEecchHhhhh
Confidence 444566777777766532 222222233557777777666654442 11122222211111 111233334456678899
Q ss_pred eeecCCcccccCCccccccccccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcc
Q 000922 849 RLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDS 928 (1223)
Q Consensus 849 ~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 928 (1223)
+|++++|.|+.+..++.-++.++.|+++.|....+.. +..+++|+.|+|++|.++++-.+-..+.+.++|.|++|.+.+
T Consensus 288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 288 ELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred hccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh
Confidence 9999999999999999999999999999999877665 788999999999999999988777788999999999999998
Q ss_pred cchhhcCCCCCCEEeccCCCC
Q 000922 929 LPASIKQLSRLRELYLSNCSM 949 (1223)
Q Consensus 929 lp~~l~~l~~L~~L~L~~~~~ 949 (1223)
+. ++..+-+|..|++++|+.
T Consensus 367 LS-GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 367 LS-GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hh-hhHhhhhheeccccccch
Confidence 87 688999999999999954
No 44
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.86 E-value=6.1e-08 Score=108.79 Aligned_cols=178 Identities=16% Similarity=0.114 Sum_probs=105.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH--
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL-- 340 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-- 340 (1223)
..++.|+|++|+||||+|+.+++.....=-..+++.+ .......+...+...+...............+.+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999876521011122221 122344566666655433211111111123333322
Q ss_pred ---hcCeEEEEecCCCCHH--HHHHHhcCC---CCCCCCCEEEEEeCChhhhhhc----------CCCceEEecCCCHHH
Q 000922 341 ---QQMKVFVVLDDVNKPE--QLDYLAGGL---DRFGLGSRVVVTSRDRQVFDKC----------RVDKIYEVEGLNQNE 402 (1223)
Q Consensus 341 ---~~kr~LlVLDdv~~~~--~~~~l~~~~---~~~~~gsrIIiTTR~~~v~~~~----------~~~~~~~l~~L~~~e 402 (1223)
.+++.++|+||++... .++.+.... ........|++|.... +.... .....+++++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 5788999999998743 344443211 1112233456665532 21111 123468899999999
Q ss_pred HHHHHHHhhhcCCC--CChhHHHHHHHHHHHhCCCchHHHHHHhhh
Q 000922 403 ALEHFSNYAFRQNI--CPKDFLVLSERIVFYANGNPLALKVLGSFL 446 (1223)
Q Consensus 403 a~~Lf~~~af~~~~--~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 446 (1223)
..+++...+..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999877643221 112224678999999999999999988776
No 45
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.75 E-value=1.3e-07 Score=120.38 Aligned_cols=305 Identities=15% Similarity=0.191 Sum_probs=181.4
Q ss_pred ceehhhHHHHHHHhhhcCC-CCeEEEEEEccCCCchHHHHHHHHHHHhhc--------cC-------cceeeeechhhhc
Q 000922 242 LVGIYSRIEQIKSLLCVGL-PDFQIIGIWGMGGIGKTTIAGAIFNQISND--------FE-------GRCFMANVREESE 305 (1223)
Q Consensus 242 ~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~-------~~~~~~~~~~~~~ 305 (1223)
++||+.+++.|...+.... ....++.+.|.+|||||+|+++|...+.++ |+ ...|+..+++...
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999999887543 346799999999999999999999876554 21 1112222222111
Q ss_pred ------cCCHHHHHHHHHHHHhhhccC-----------cC---------CCCc--------hHHHHHHH-hcCeEEEEec
Q 000922 306 ------RGGLVYLRERLYSEILEETLK-----------IR---------TPSV--------PKCIKERL-QQMKVFVVLD 350 (1223)
Q Consensus 306 ------~~~l~~l~~~ll~~l~~~~~~-----------~~---------~~~~--------~~~l~~~L-~~kr~LlVLD 350 (1223)
.........+++..++..... .+ .... ...+.... +.|++.+|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 001111122222222111100 00 0000 11122222 3569999999
Q ss_pred CC-CCHH----HHHHHhcCCC--C-CCCCCEEEEEeCCh--hhhhhcCCCceEEecCCCHHHHHHHHHHhhhcCCCCChh
Q 000922 351 DV-NKPE----QLDYLAGGLD--R-FGLGSRVVVTSRDR--QVFDKCRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKD 420 (1223)
Q Consensus 351 dv-~~~~----~~~~l~~~~~--~-~~~gsrIIiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~ 420 (1223)
|+ |-.. -++.++.... - .....-.+.|.+.. .+.........+.+.+|+..+..++.......... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~---~ 238 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL---L 238 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc---c
Confidence 99 3322 2444444332 0 00011122233322 11122234478999999999999999887643222 2
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHhhhccC-------CHHHHHHHHhhhccCC-CCcHHhHHHHhHhcccHhHHhHhheee
Q 000922 421 FLVLSERIVFYANGNPLALKVLGSFLQRK-------CKLQWENALKNLTRIS-DPDIYDMLKISYNELKQEEKSIFLDIA 492 (1223)
Q Consensus 421 ~~~l~~~i~~~~~GlPLal~~lg~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~L~~sy~~L~~~~k~~fl~~a 492 (1223)
..+....|+++..|+|+-+..+-..+... +...|..-...+.... .+.+.+.+..-.+.||...++++...|
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA 318 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAA 318 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 23567899999999999999988888743 3455665555544432 122556688899999999999999999
Q ss_pred cccCCCCHHHHHHHhcCCC--CHHhhHHHHHhccceEEec-------CCe---EEecHHHHHHHHHHHh
Q 000922 493 CFFKGDDKDFMTRIQDDPE--SVHYGLNVLVDKSLVALSC-------NNK---LQIHDLLQEFGREIVR 549 (1223)
Q Consensus 493 ~f~~~~~~~~~~~~l~~~~--~~~~~l~~L~~~sLi~~~~-------~~~---~~mHdll~~~~~~i~~ 549 (1223)
|+.+.++.+.+..+..... .+....+.|.+...+..++ ... -..|+.+|+.+-....
T Consensus 319 ~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 319 CIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred HhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 9999999999888877554 3444445555544443221 111 1568888887765543
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.75 E-value=1.8e-09 Score=116.36 Aligned_cols=221 Identities=20% Similarity=0.258 Sum_probs=128.7
Q ss_pred CccEEEccCCCcc-----cccccccccCccceeeeccccccc----cCcc-------ccccCCcccEEeecCCcCcccch
Q 000922 728 NVIELDLKGTAIE-----EIPSSIECLTKLEELDLAYCRRLK----SLPS-------SICKLKSLHLLCLYNCSNFEIFP 791 (1223)
Q Consensus 728 ~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~c~~l~----~lp~-------~i~~L~~L~~L~L~~c~~~~~~p 791 (1223)
.+.+|+|+||.+. .+.+.+.+.++|+.-++++ -.++ .+|. .+...+.|++|+||.|-.-...+
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4455555555443 2333444455566555554 1111 1222 12334566666666665443333
Q ss_pred h----hhcccccceeeecCCCCccccc--------------cccccCCCCcEEEccCCCCCC----CCccccCCCCCCce
Q 000922 792 E----ILEKMECLEYIDLESTAVKELP--------------SSVEQLKGLRELILEDCSELS----KLPENLGNLKSLKR 849 (1223)
Q Consensus 792 ~----~l~~l~~L~~L~L~~n~l~~lp--------------~~i~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~ 849 (1223)
. .+..+..|++|.|.+|++.... .-+..-+.|+.+....|..-. .+...+...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 2 3445566666666666665211 113344567777666654321 12234556677777
Q ss_pred eecCCccccc-----CCccccccccccEEEccCCCCCC-----CCccccCCCCCCEEEcCCCCCCC-----Cchhh-cCC
Q 000922 850 LFAKRSAISK-----LPSSIAYLDEVIELSFHGCRGLV-----LPPILSGLSSLTKLDLSDCDVME-----IPQDI-GRA 913 (1223)
Q Consensus 850 L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~L~~~~l~~-----lp~~l-~~l 913 (1223)
+.+..|.|.. +...+..+++|+.|+++.|.... +...++.+++|+.|++++|.+.+ +-..+ ...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 7777776652 33456677788888887776432 33456677888888888888874 22222 347
Q ss_pred CCCcEEeCCCCCCc-----ccchhhcCCCCCCEEeccCCCC
Q 000922 914 SSLEILDISGNDFD-----SLPASIKQLSRLRELYLSNCSM 949 (1223)
Q Consensus 914 ~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~~~~ 949 (1223)
|+|+.|.+.+|.++ .+..++...+.|..|+|++|..
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88889999888887 2444566688888888888854
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.2e-09 Score=118.55 Aligned_cols=179 Identities=21% Similarity=0.239 Sum_probs=138.0
Q ss_pred ccCCcccEEeecCCcCcccch-hhhcccccceeeecCCCCccc---cccccccCCCCcEEEccCCCCCCCCccc-cCCCC
Q 000922 771 CKLKSLHLLCLYNCSNFEIFP-EILEKMECLEYIDLESTAVKE---LPSSVEQLKGLRELILEDCSELSKLPEN-LGNLK 845 (1223)
Q Consensus 771 ~~L~~L~~L~L~~c~~~~~~p-~~l~~l~~L~~L~L~~n~l~~---lp~~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~ 845 (1223)
.++.+|+...|.+|....... .....|++++.|+|+.|-+.. +..-...|++|+.|+|+.|....-..+. -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 468899999998876432221 467789999999999998774 3344678999999999998765322221 23678
Q ss_pred CCceeecCCcccc--cCCccccccccccEEEccCCCC-CCCCccccCCCCCCEEEcCCCCCCCCc--hhhcCCCCCcEEe
Q 000922 846 SLKRLFAKRSAIS--KLPSSIAYLDEVIELSFHGCRG-LVLPPILSGLSSLTKLDLSDCDVMEIP--QDIGRASSLEILD 920 (1223)
Q Consensus 846 ~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~~~~-~~~p~~~~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~ 920 (1223)
+|+.|.++.|.++ .+......+++|+.|.+.+|.. .........+..|+.|+|++|++.+.+ ...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 8999999999998 4445566789999999999953 222334556789999999999999877 5588999999999
Q ss_pred CCCCCCccc--chh-----hcCCCCCCEEeccCCCC
Q 000922 921 ISGNDFDSL--PAS-----IKQLSRLRELYLSNCSM 949 (1223)
Q Consensus 921 Ls~n~l~~l--p~~-----l~~l~~L~~L~L~~~~~ 949 (1223)
++.|.+.++ |+. ...+++|++|++..|+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 999999854 433 46789999999999965
No 48
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=1.3e-08 Score=103.75 Aligned_cols=84 Identities=27% Similarity=0.382 Sum_probs=32.5
Q ss_pred cccccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCCCCchhh-cCCCCCcEEeCCCCCCcccch--hhcCCCCCCEEe
Q 000922 867 LDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDI-GRASSLEILDISGNDFDSLPA--SIKQLSRLRELY 943 (1223)
Q Consensus 867 l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~ 943 (1223)
+.+|+.|++++|....++. +..+++|+.|++++|.+++++..+ ..+++|+.|.|++|++..+.. .+..+++|+.|+
T Consensus 41 l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 3344444444444433332 455677777778888777776554 357788888888887775542 456778888888
Q ss_pred ccCCCCCC
Q 000922 944 LSNCSMLQ 951 (1223)
Q Consensus 944 L~~~~~l~ 951 (1223)
|.+||...
T Consensus 120 L~~NPv~~ 127 (175)
T PF14580_consen 120 LEGNPVCE 127 (175)
T ss_dssp -TT-GGGG
T ss_pred ccCCcccc
Confidence 88887643
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=2e-08 Score=102.30 Aligned_cols=136 Identities=24% Similarity=0.307 Sum_probs=49.4
Q ss_pred CCCccccccccccCCCCcEEEccCCCCCCCCccccC-CCCCCceeecCCcccccCCccccccccccEEEccCCCCCCCCc
Q 000922 807 STAVKELPSSVEQLKGLRELILEDCSELSKLPENLG-NLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPP 885 (1223)
Q Consensus 807 ~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~p~ 885 (1223)
.+.|...|. +.+..+++.|+|.+|.... + +.++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|....+.+
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccc-ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 344444443 4455577888888876543 2 3455 5778888888888888774 57778888888888888877765
Q ss_pred cc-cCCCCCCEEEcCCCCCCCCc--hhhcCCCCCcEEeCCCCCCcccch----hhcCCCCCCEEeccC
Q 000922 886 IL-SGLSSLTKLDLSDCDVMEIP--QDIGRASSLEILDISGNDFDSLPA----SIKQLSRLRELYLSN 946 (1223)
Q Consensus 886 ~~-~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~ 946 (1223)
.+ ..+++|++|+|++|++.++- ..+..+++|+.|+|.+|.+...+. .+..+|+|+.||-..
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 44 35788888888888887643 346778888888888888876553 356677777776543
No 50
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.66 E-value=8e-07 Score=106.95 Aligned_cols=294 Identities=17% Similarity=0.193 Sum_probs=182.1
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRE 314 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~ 314 (1223)
+|......|-|..-++.+.. ..+.|.+.|..++|.|||||+..... ....=..+.|+..- ....+......
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld---e~dndp~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD---ESDNDPARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC---CccCCHHHHHH
Confidence 44556677777655554443 34789999999999999999999987 33444557787532 22334556666
Q ss_pred HHHHHHhhhccCcCC-----------CCc---hHHHHHHHh--cCeEEEEecCCCCH------HHHHHHhcCCCCCCCCC
Q 000922 315 RLYSEILEETLKIRT-----------PSV---PKCIKERLQ--QMKVFVVLDDVNKP------EQLDYLAGGLDRFGLGS 372 (1223)
Q Consensus 315 ~ll~~l~~~~~~~~~-----------~~~---~~~l~~~L~--~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gs 372 (1223)
.++..+..-.....+ ... ...+..-+. .++..+||||..-. +.++.+... ..++-
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l 161 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENL 161 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCe
Confidence 666665432221110 011 222222222 46899999997432 235555555 34677
Q ss_pred EEEEEeCChhhhhhc---CCCceEEec----CCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhh
Q 000922 373 RVVVTSRDRQVFDKC---RVDKIYEVE----GLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKVLGSF 445 (1223)
Q Consensus 373 rIIiTTR~~~v~~~~---~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~ 445 (1223)
.+|||||...-.... -.+...++. .|+.+|+-++|..... . +-.+.-++.+.+..+|-+-|+..++=.
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l--~Ld~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---L--PLDAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---C--CCChHHHHHHHhhcccHHHHHHHHHHH
Confidence 899999987433221 112344444 4899999999987641 1 112245688999999999999998887
Q ss_pred hcc-CCHHHHHHHHhhhccCCCCcHHh-HHHHhHhcccHhHHhHhheeecccCCCCHHHHHHHhcCCCCHHhhHHHHHhc
Q 000922 446 LQR-KCKLQWENALKNLTRISDPDIYD-MLKISYNELKQEEKSIFLDIACFFKGDDKDFMTRIQDDPESVHYGLNVLVDK 523 (1223)
Q Consensus 446 L~~-~~~~~w~~~l~~l~~~~~~~i~~-~L~~sy~~L~~~~k~~fl~~a~f~~~~~~~~~~~~l~~~~~~~~~l~~L~~~ 523 (1223)
+++ .+.+.--. .+... ...|.+ ...--+|.||++.|..++-+|++.. +.-+ +..-+.+..+....++.|..+
T Consensus 237 ~~~~~~~~q~~~---~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~e-L~~~Ltg~~ng~amLe~L~~~ 310 (894)
T COG2909 237 LRNNTSAEQSLR---GLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDE-LCNALTGEENGQAMLEELERR 310 (894)
T ss_pred ccCCCcHHHHhh---hccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHH-HHHHHhcCCcHHHHHHHHHhC
Confidence 773 23332211 11111 112222 2233578999999999999998843 2222 222233334666778999999
Q ss_pred cceEEe--c-CCeEEecHHHHHHHHHHHhhc
Q 000922 524 SLVALS--C-NNKLQIHDLLQEFGREIVRQQ 551 (1223)
Q Consensus 524 sLi~~~--~-~~~~~mHdll~~~~~~i~~~~ 551 (1223)
+|+-+. + ++-++.|.++.+|-+.....+
T Consensus 311 gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 311 GLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred CCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 987632 2 557899999999998776653
No 51
>PRK06893 DNA replication initiation factor; Validated
Probab=98.65 E-value=2.4e-07 Score=100.54 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=93.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQ 342 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 342 (1223)
.+.+.|||++|+|||+||+++++....+...+.|+... .. .... ..+.+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-~~------~~~~--------------------~~~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-KS------QYFS--------------------PAVLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-Hh------hhhh--------------------HHHHhhcc-
Confidence 46789999999999999999999877666666676421 00 0000 01111122
Q ss_pred CeEEEEecCCCCH---HHHH-HHhcCCCCC-CCCCEEEEEeCCh----------hhhhhcCCCceEEecCCCHHHHHHHH
Q 000922 343 MKVFVVLDDVNKP---EQLD-YLAGGLDRF-GLGSRVVVTSRDR----------QVFDKCRVDKIYEVEGLNQNEALEHF 407 (1223)
Q Consensus 343 kr~LlVLDdv~~~---~~~~-~l~~~~~~~-~~gsrIIiTTR~~----------~v~~~~~~~~~~~l~~L~~~ea~~Lf 407 (1223)
+.-+|||||++.. .+|+ .+...+... ..|..+||+|.+. .+...++...+++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 2348999999863 2333 222222111 2466665554442 44444555678999999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 000922 408 SNYAFRQNICPKDFLVLSERIVFYANGNPLALKVLG 443 (1223)
Q Consensus 408 ~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 443 (1223)
.+.++...... -++...-|++++.|..-++..+-
T Consensus 171 ~~~a~~~~l~l--~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 171 QRNAYQRGIEL--SDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHH
Confidence 99987544222 23566778888877665544433
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.62 E-value=3.4e-07 Score=101.31 Aligned_cols=173 Identities=18% Similarity=0.263 Sum_probs=106.9
Q ss_pred CCCCCCceehhhHHH---HHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHH
Q 000922 236 SSDFEGLVGIYSRIE---QIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
|...+++||-+.-+. -|..++ ....+...-.||++|+||||||+.+.......|...-= ...+++++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v--~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA--------v~~gvkdl 89 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAV--EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA--------VTSGVKDL 89 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHH--hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc--------ccccHHHH
Confidence 445556666554442 233343 23456777899999999999999999987776653211 12344444
Q ss_pred HHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCC--HHHHHHHhcCCCCCCCCCEEEE--EeCChhhh---h
Q 000922 313 RERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNK--PEQLDYLAGGLDRFGLGSRVVV--TSRDRQVF---D 385 (1223)
Q Consensus 313 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIi--TTR~~~v~---~ 385 (1223)
.+-+- +.-+.+..+++.+|.+|.|.. ..|-+.|++.. ..|.-|+| ||.++... .
T Consensus 90 r~i~e----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 90 REIIE----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHHH----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHH
Confidence 33221 111334458999999999964 56777777664 46766666 56554321 1
Q ss_pred hcCCCceEEecCCCHHHHHHHHHHhhhcCCCCCh-----hHHHHHHHHHHHhCCCch
Q 000922 386 KCRVDKIYEVEGLNQNEALEHFSNYAFRQNICPK-----DFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 386 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~-----~~~~l~~~i~~~~~GlPL 437 (1223)
......++++++|+.+|-.+++.+-+-.....-. -.++....++..++|---
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 1234579999999999999999884332211111 123455677888888653
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=5.8e-09 Score=112.46 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=87.9
Q ss_pred ccccceeeecCCCCcccccc-----ccccCCCCcEEEccCCCCCC----CCccccCCCCCCceeecCCccccc-----CC
Q 000922 796 KMECLEYIDLESTAVKELPS-----SVEQLKGLRELILEDCSELS----KLPENLGNLKSLKRLFAKRSAISK-----LP 861 (1223)
Q Consensus 796 ~l~~L~~L~L~~n~l~~lp~-----~i~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~n~i~~-----lp 861 (1223)
.-+.|+++...+|.+..-+. .+...+.|+.+.+..|.... -+...+..+++|+.|++..|.++. +.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 34567777777776664332 35555677777776655432 122345677777777777776652 34
Q ss_pred ccccccccccEEEccCCCCCC-----CC-ccccCCCCCCEEEcCCCCCCC-----CchhhcCCCCCcEEeCCCCCCc
Q 000922 862 SSIAYLDEVIELSFHGCRGLV-----LP-PILSGLSSLTKLDLSDCDVME-----IPQDIGRASSLEILDISGNDFD 927 (1223)
Q Consensus 862 ~~~~~l~~L~~L~l~~~~~~~-----~p-~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 927 (1223)
..+..+++|+.|++++|.... +. ..-...++|+.|.+.+|.++. +-..+...+.|+.|+|++|.+.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 456667788888888876433 11 122357899999999999883 4444666899999999999983
No 54
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.49 E-value=1.6e-06 Score=102.98 Aligned_cols=178 Identities=17% Similarity=0.241 Sum_probs=107.2
Q ss_pred CCCCCCceehhhHHHH---HHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHH
Q 000922 236 SSDFEGLVGIYSRIEQ---IKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
|...+++||.+..+.. +..++.. .....+.++|++|+||||+|+.+++.....|.. +... ..+...+
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~~~~~~i 77 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----TSGVKDL 77 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----cccHHHH
Confidence 4556789999887666 7777643 345678899999999999999999976544421 1110 1111111
Q ss_pred HHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEE--eCChh--hhh-
Q 000922 313 RERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVT--SRDRQ--VFD- 385 (1223)
Q Consensus 313 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiT--TR~~~--v~~- 385 (1223)
++++.... .....+++.+|++|+++.. .+.+.|...+. .|..++|. |.+.. +..
T Consensus 78 -r~ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 78 -REVIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred -HHHHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 11111110 0112457889999999864 45566655543 35555553 33321 111
Q ss_pred hcCCCceEEecCCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHHhCCCchHHHHH
Q 000922 386 KCRVDKIYEVEGLNQNEALEHFSNYAFRQNICP-KDFLVLSERIVFYANGNPLALKVL 442 (1223)
Q Consensus 386 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlPLal~~l 442 (1223)
......++++.+++.++..+++.+.+....... .-..+....+++.++|.+..+..+
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 112236899999999999999988653311111 122356778899999998765443
No 55
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.43 E-value=3.9e-06 Score=91.47 Aligned_cols=174 Identities=17% Similarity=0.226 Sum_probs=101.9
Q ss_pred CCCcee--hhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHH
Q 000922 239 FEGLVG--IYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERL 316 (1223)
Q Consensus 239 ~~~~vG--r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~l 316 (1223)
.++|++ .+..++++.+++. ....+.|.|+|.+|+|||+||+.++++........+|+. ...... ..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~---------~~ 81 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQ---------AD 81 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHH---------hH
Confidence 345552 3446677777653 234568899999999999999999997665544445553 211110 00
Q ss_pred HHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCHH---H-HHHHhcCCCC-CCCCCEEEEEeCChh---------
Q 000922 317 YSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKPE---Q-LDYLAGGLDR-FGLGSRVVVTSRDRQ--------- 382 (1223)
Q Consensus 317 l~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gsrIIiTTR~~~--------- 382 (1223)
.. +.+.+.. .-+|||||++... . .+.+...+.. ...+.++|+||+...
T Consensus 82 -~~----------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 82 -PE----------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred -HH----------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHH
Confidence 00 0111122 2389999997643 1 2333322211 123458999888532
Q ss_pred hhhhcCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHh
Q 000922 383 VFDKCRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKVLGS 444 (1223)
Q Consensus 383 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~ 444 (1223)
+...+.....+++++++.++...++...+-..... --.+....+++.+.|+|..+..+..
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 11222224579999999999999988765332211 1224557777788999877666543
No 56
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.42 E-value=5.6e-06 Score=100.37 Aligned_cols=246 Identities=13% Similarity=0.062 Sum_probs=128.3
Q ss_pred CCCCCCCceehhhHHHHHHHhhhc---CCCCeEEEEEEccCCCchHHHHHHHHHHHhhc-----cC--cceeeeechhhh
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCV---GLPDFQIIGIWGMGGIGKTTIAGAIFNQISND-----FE--GRCFMANVREES 304 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~--~~~~~~~~~~~~ 304 (1223)
+...++.+.||+.++++|...|.. +.....++-|+|++|.|||+.++.|.+++... .+ .++++.+.
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm---- 825 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM---- 825 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC----
Confidence 345668899999999999988853 22233577899999999999999999876432 12 12344221
Q ss_pred ccCCHHHHHHHHHHHHhhhccCcC--CCCchHHHHHHHh---cCeEEEEecCCCCHH--HHHHHhcCCCCC-CCCCEEEE
Q 000922 305 ERGGLVYLRERLYSEILEETLKIR--TPSVPKCIKERLQ---QMKVFVVLDDVNKPE--QLDYLAGGLDRF-GLGSRVVV 376 (1223)
Q Consensus 305 ~~~~l~~l~~~ll~~l~~~~~~~~--~~~~~~~l~~~L~---~kr~LlVLDdv~~~~--~~~~l~~~~~~~-~~gsrIIi 376 (1223)
.......+...+..++........ .......+.+.+. ....+||||+|+... .-+.|...+.|. ..+++|+|
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 112344555555555543322111 1111333333331 224589999997643 112222222221 24566554
Q ss_pred --EeCChh--------hhhhcCCCceEEecCCCHHHHHHHHHHhhhcC-CCCChh-HHHHHHHHHHHhCCCchHHHHHHh
Q 000922 377 --TSRDRQ--------VFDKCRVDKIYEVEGLNQNEALEHFSNYAFRQ-NICPKD-FLVLSERIVFYANGNPLALKVLGS 444 (1223)
Q Consensus 377 --TTR~~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~-~~~~~~-~~~l~~~i~~~~~GlPLal~~lg~ 444 (1223)
+|.+.. +...++ ...+..++++.++-.+++..++-.. ....++ .+-+|+.++...|..=.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 333221 112222 2245679999999999999987532 122232 323333333333334456655544
Q ss_pred hhccC-----CHHHHHHHHhhhccCCCCcHHhHHHHhHhcccHhHHhHhheee
Q 000922 445 FLQRK-----CKLQWENALKNLTRISDPDIYDMLKISYNELKQEEKSIFLDIA 492 (1223)
Q Consensus 445 ~L~~~-----~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a 492 (1223)
+...+ ..+....+...+... .+.-....||.++|-+++.+.
T Consensus 985 AgEikegskVT~eHVrkAleeiE~s-------rI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLFDS-------PLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHHhh-------hHHHHHHcCCHHHHHHHHHHH
Confidence 43211 223333333333211 122234578888776655443
No 57
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=6.1e-07 Score=111.79 Aligned_cols=103 Identities=21% Similarity=0.302 Sum_probs=54.1
Q ss_pred ccEEEccCCCcc-cccccccccCccceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecCC
Q 000922 729 VIELDLKGTAIE-EIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLES 807 (1223)
Q Consensus 729 L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~ 807 (1223)
++.|+|++|.+. .+|..++.|++|+.|+|++|...+.+|..++.+++|+.|+|++|...+.+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444555555554 4455555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCcc-ccccccccC-CCCcEEEccCC
Q 000922 808 TAVK-ELPSSVEQL-KGLRELILEDC 831 (1223)
Q Consensus 808 n~l~-~lp~~i~~l-~~L~~L~L~~~ 831 (1223)
|.+. .+|..++.+ .++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 5554 444444332 23344444444
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=4.8e-08 Score=116.37 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=19.1
Q ss_pred CCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCccc
Q 000922 893 LTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSL 929 (1223)
Q Consensus 893 L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 929 (1223)
|+.+++++|.+..++..+..+..+..|++..|.+..+
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcccccc
Confidence 4555555555555444444555555555555554433
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=1.9e-06 Score=98.15 Aligned_cols=153 Identities=22% Similarity=0.318 Sum_probs=71.4
Q ss_pred cccceeeecCCCCccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCc-ccccCCccccccccccEEEc
Q 000922 797 MECLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRS-AISKLPSSIAYLDEVIELSF 875 (1223)
Q Consensus 797 l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n-~i~~lp~~~~~l~~L~~L~l 875 (1223)
+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ ..+|+.|.+++| .+..+|.. |+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEe
Confidence 4455555666555665551 22356667776666666666544 245666666665 44444432 344444
Q ss_pred cCCCCCCCCccccCCCCCCEEEcCCCCCC---CCchhhcCCCCCcEEeCCCCCCcccchhhcCCCCCCEEeccCCCCC-C
Q 000922 876 HGCRGLVLPPILSGLSSLTKLDLSDCDVM---EIPQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSML-Q 951 (1223)
Q Consensus 876 ~~~~~~~~p~~~~~l~~L~~L~L~~~~l~---~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l-~ 951 (1223)
.++....++. -.++|+.|.+.+++.. .+|. .-.++|++|++++|....+|..+. .+|+.|+++.|... .
T Consensus 120 ~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~sL 192 (426)
T PRK15386 120 KGSATDSIKN---VPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKTTW 192 (426)
T ss_pred CCCCCccccc---CcchHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEecccccccc
Confidence 3332211110 0123455555332211 1111 012456666666665554443332 35666666554211 1
Q ss_pred CC--CCccCCCcEEeccCC
Q 000922 952 SL--PELPLRVKLLDASNC 968 (1223)
Q Consensus 952 ~l--p~l~~~L~~L~~~~c 968 (1223)
.+ +.+|+++ .|.+.+|
T Consensus 193 eI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 193 NISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred cCccccccccc-Eechhhh
Confidence 11 1344555 5666655
No 60
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.34 E-value=5.2e-07 Score=100.80 Aligned_cols=279 Identities=19% Similarity=0.207 Sum_probs=177.3
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL 340 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 340 (1223)
...|.+.++|.|||||||++-.+.. +...|...+++.+.+...+..-+. -.+...+.-... +.......+..+.
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~---~~~ag~~gl~~~--~g~~~~~~~~~~~ 85 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVF---PTLAGALGLHVQ--PGDSAVDTLVRRI 85 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhH---HHHHhhcccccc--cchHHHHHHHHHH
Confidence 3468999999999999999999999 888999888887766655432111 111111111110 1111255677788
Q ss_pred hcCeEEEEecCCCCHH-HHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEecCCCHH-HHHHHHHHhhhcCC---
Q 000922 341 QQMKVFVVLDDVNKPE-QLDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEVEGLNQN-EALEHFSNYAFRQN--- 415 (1223)
Q Consensus 341 ~~kr~LlVLDdv~~~~-~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~af~~~--- 415 (1223)
.+++.++|+||-.+.. +-..+...+....+.-+|+.|+|+.-... .+..+.++.|+.. ++.++|...+....
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~---ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA---GEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc---ccccccCCccccCCchhHHHHHHHHHhccce
Confidence 8999999999987653 22233333333345567888998764332 4567788888776 79999987764221
Q ss_pred CCChhHHHHHHHHHHHhCCCchHHHHHHhhhccCCHHHHHHHHh----hhccC------CCCcHHhHHHHhHhcccHhHH
Q 000922 416 ICPKDFLVLSERIVFYANGNPLALKVLGSFLQRKCKLQWENALK----NLTRI------SDPDIYDMLKISYNELKQEEK 485 (1223)
Q Consensus 416 ~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~----~l~~~------~~~~i~~~L~~sy~~L~~~~k 485 (1223)
...........+|.+...|.|++|...++..+.-...+....+. .+... ........+..||.-|..-++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 11122335678899999999999999999888665444333332 22222 234456779999999999999
Q ss_pred hHhheeecccCCCCHHHHHHHhcCCC------CHHhhHHHHHhccceEEec---CCeEEecHHHHHHHHHHH
Q 000922 486 SIFLDIACFFKGDDKDFMTRIQDDPE------SVHYGLNVLVDKSLVALSC---NNKLQIHDLLQEFGREIV 548 (1223)
Q Consensus 486 ~~fl~~a~f~~~~~~~~~~~~l~~~~------~~~~~l~~L~~~sLi~~~~---~~~~~mHdll~~~~~~i~ 548 (1223)
-.|--++.|..++..+.......+.. ..-..+..+++++++.... .-+++.-+-.+.|+.+..
T Consensus 243 ~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 243 ALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred HHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999988887763332222211 2233467789999987543 112333444444444443
No 61
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.33 E-value=2e-06 Score=100.53 Aligned_cols=173 Identities=18% Similarity=0.263 Sum_probs=100.8
Q ss_pred CCCCceehhhHHHHHHHhhhcC-----------CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhcc
Q 000922 238 DFEGLVGIYSRIEQIKSLLCVG-----------LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESER 306 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 306 (1223)
..+++.|++..++++.+.+... -...+-|.++|++|+|||++|+++++.....|-... .
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~------~---- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV------G---- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc------h----
Confidence 4457889999988888766321 122456899999999999999999997765542110 0
Q ss_pred CCHHHHHHHHHHHHhhhccCcCCCCch-HHHHHHHhcCeEEEEecCCCCHH----------------HHHHHhcCCCCC-
Q 000922 307 GGLVYLRERLYSEILEETLKIRTPSVP-KCIKERLQQMKVFVVLDDVNKPE----------------QLDYLAGGLDRF- 368 (1223)
Q Consensus 307 ~~l~~l~~~ll~~l~~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~- 368 (1223)
..+......+ .. ... ..++..-...+.+|+||+++... .+..+...+...
T Consensus 190 ---~~l~~~~~g~----~~-----~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 ---SELVRKYIGE----GA-----RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ---HHHHHHhhhH----HH-----HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 0111111000 00 001 11111113457899999987531 122333222211
Q ss_pred -CCCCEEEEEeCChhhh-----hhcCCCceEEecCCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHHhCCCc
Q 000922 369 -GLGSRVVVTSRDRQVF-----DKCRVDKIYEVEGLNQNEALEHFSNYAFRQNICP-KDFLVLSERIVFYANGNP 436 (1223)
Q Consensus 369 -~~gsrIIiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlP 436 (1223)
..+.+||.||...... .....+..++++..+.++..++|..++.+..... .++ ..+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 2466788888754322 2123456899999999999999998875543322 233 45666666654
No 62
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.30 E-value=2.9e-06 Score=93.73 Aligned_cols=139 Identities=21% Similarity=0.365 Sum_probs=99.4
Q ss_pred CCCcccEEEcCcccccccchHHHHHHHHhhCCCcccccC-CCCCCCCccHHHHHHHhhcceEEEEeccCccc--------
Q 000922 62 AQCKYDVFVSFRGEDTRDNFTSHLVAALCRKKIKTFIDE-QLDRGDDISPALLDAIERSKISVIIFSENYAS-------- 132 (1223)
Q Consensus 62 ~~~~~dvFis~~g~d~~~~f~~~l~~~L~~~gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~-------- 132 (1223)
...+.|||||||..- ....++.+.-.|+-+|++||+|- .+..|+ +...+++.|+.++-+|.|++||...
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 457899999998654 67788999999999999999998 777776 4568999999999999999999654
Q ss_pred chhhHHHHHHHHHHhhcCCCEEEEEEeeeCCccccccccchhhHHHHHHhhhcCChhHHHHHHHHHHHHhccCCCCCCCC
Q 000922 133 SKWCLDELVKILECKNKNAQMVVPVFYHVDPSDVRKQTGSFGDAFVKHEKQFKGIPEKVQKWRVVLTEASNLSGWDSMNI 212 (1223)
Q Consensus 133 S~wcl~El~~i~~~~~~~~~~v~Pvfy~v~ps~vr~q~g~~~~~~~~~~~~~~~~~~~v~~w~~aL~~~a~~~g~~~~~~ 212 (1223)
-.|--.|++-+++|.+. ++|||-. ||...++ .+.+ .+.+..+....|.....
T Consensus 687 eDWVHKEl~~Afe~~KN----IiPI~D~---------------aFE~Pt~-----ed~i---PnDirmi~kyNGvKWvH- 738 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQKN----IIPIFDT---------------AFEFPTK-----EDQI---PNDIRMITKYNGVKWVH- 738 (832)
T ss_pred HHHHHHHHHHHHHhcCC----eeeeecc---------------cccCCCc-----hhcC---cHHHHHHHhccCeeeeh-
Confidence 34777899989988765 9999842 1211111 0111 12233344455533232
Q ss_pred chhHHHHHHHHHHHHhhc
Q 000922 213 RPEAKLVDEIIEDILKKL 230 (1223)
Q Consensus 213 ~~e~~~i~~i~~~v~~~l 230 (1223)
.++..-+.+++.-+...+
T Consensus 739 dYQdA~maKvvRFitGe~ 756 (832)
T KOG3678|consen 739 DYQDACMAKVVRFITGEL 756 (832)
T ss_pred hhHHHHHHHHHHHHhccc
Confidence 455667888888888777
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.30 E-value=1.3e-06 Score=99.66 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=27.8
Q ss_pred cccceEEecCCCCCCcccCcccccccceeecccCCcCCccCCCCCC-CccEEEccCC-Cccccc
Q 000922 682 FNNLVMLCLSHCESLRCFPQNIHFRTLIEIDFSYCINLTEFPEISG-NVIELDLKGT-AIEEIP 743 (1223)
Q Consensus 682 l~~L~~L~Ls~~~~l~~~p~~~~~~~L~~L~Ls~c~~l~~~p~~~~-~L~~L~L~~~-~i~~lp 743 (1223)
+.+++.|++++| .++.+|.+ ..+|+.|.+++|..+..+|+.+. +|++|+++++ .+..+|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVL--PNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCC--CCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc
Confidence 455555555555 44444421 12455555555555555444332 4444444443 344444
No 64
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.30 E-value=1.2e-05 Score=93.40 Aligned_cols=197 Identities=17% Similarity=0.185 Sum_probs=108.1
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc-cCc-ceeeeechhhhccCCHHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND-FEG-RCFMANVREESERGGLVYLR 313 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~-~~~~~~~~~~~~~~~l~~l~ 313 (1223)
|...++++|++..++.+..++..+ ..+.+.++|++|+||||+|+++++.+... +.. .+++. ........ ...+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~-~~~~~ 86 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQG-KKYLV 86 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcc-hhhhh
Confidence 445678999999999999988543 33467899999999999999999876433 222 22332 21110000 00000
Q ss_pred HH-HHHHHhhhccCcCCCCchHHHHHHH---------hcCeEEEEecCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCCh
Q 000922 314 ER-LYSEILEETLKIRTPSVPKCIKERL---------QQMKVFVVLDDVNKPE--QLDYLAGGLDRFGLGSRVVVTSRDR 381 (1223)
Q Consensus 314 ~~-ll~~l~~~~~~~~~~~~~~~l~~~L---------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~~ 381 (1223)
.. ............ .......+++.+ ...+-+||+||++... ..+.+...+....+.+++|+||...
T Consensus 87 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 87 EDPRFAHFLGTDKRI-RSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred cCcchhhhhhhhhhh-ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00 000000000000 000011222211 1334589999997542 2334443333334567788887543
Q ss_pred -hhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHH
Q 000922 382 -QVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLAL 439 (1223)
Q Consensus 382 -~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 439 (1223)
.+.... .....+++.+++.++..+++...+-..+.. -..+....++++++|.+-.+
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 222221 233578899999999999988876443322 12356678888888876543
No 65
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1.4e-05 Score=97.00 Aligned_cols=193 Identities=13% Similarity=0.120 Sum_probs=112.7
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc--cCcceeeeechhhhccCCHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND--FEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
.|...+++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+.+-.. .... ..+.-..
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~-----------PCG~C~s 78 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQ-----------PCGVCRA 78 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCC-----------CCcccHH
Confidence 35567889999999999999885442 24566799999999999999999865321 1000 0000000
Q ss_pred HHHHHHHHhhhccCcC--CCCchHHHHHHH--------hcCeEEEEecCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCC
Q 000922 313 RERLYSEILEETLKIR--TPSVPKCIKERL--------QQMKVFVVLDDVNKPE--QLDYLAGGLDRFGLGSRVVVTSRD 380 (1223)
Q Consensus 313 ~~~ll~~l~~~~~~~~--~~~~~~~l~~~L--------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~ 380 (1223)
.+.+...-..+...++ +....+.+++.+ .++.-++|||+++... .++.|+..+....+..++|+||++
T Consensus 79 Cr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred HHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 0000000000000000 000011121111 2345578899998754 367777666555667888888887
Q ss_pred hh-hhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc-hHHHH
Q 000922 381 RQ-VFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNP-LALKV 441 (1223)
Q Consensus 381 ~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~ 441 (1223)
.+ +... ......++++.++.++..+.+.+.+...+.. -..+..+.|++.++|.. -|+..
T Consensus 159 ~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 159 PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 53 3222 2234689999999999999998876443321 12355678888898865 35444
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.8e-05 Score=92.14 Aligned_cols=191 Identities=13% Similarity=0.143 Sum_probs=111.2
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRER 315 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ 315 (1223)
|...++++|-+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+....... . ...+.-....+
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---~------~pc~~c~~c~~ 81 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---S------NPCRKCIICKE 81 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---C------CCCCCCHHHHH
Confidence 4566789999999999998885432 346778999999999999999998764211100 0 00000000000
Q ss_pred HHHHHhhhccCc-----CCCCchHHHHHHH-----hcCeEEEEecCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCCh-h
Q 000922 316 LYSEILEETLKI-----RTPSVPKCIKERL-----QQMKVFVVLDDVNKPE--QLDYLAGGLDRFGLGSRVVVTSRDR-Q 382 (1223)
Q Consensus 316 ll~~l~~~~~~~-----~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~~-~ 382 (1223)
+........... ...+....+.+.+ .+++-++|+|+++... .++.++..+....+..++|++|.+. .
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 000000000000 0000011222221 2345689999998764 4667776666556677777777653 3
Q ss_pred hhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 000922 383 VFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 383 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 438 (1223)
+... .+....+++++++.++..+.+...+-..+.. -..+.+..|++.++|.|-.
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID--TDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 3322 2234689999999999999888776443321 1224567788899998853
No 67
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=1.2e-06 Score=109.20 Aligned_cols=91 Identities=30% Similarity=0.386 Sum_probs=53.7
Q ss_pred cceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecCCCCcc-ccccccccCCCCcEEEccC
Q 000922 752 LEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVK-ELPSSVEQLKGLRELILED 830 (1223)
Q Consensus 752 L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~ 830 (1223)
++.|+|++|...+.+|..+++|++|+.|+|++|...+.+|..++.+++|+.|+|++|.+. .+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666666555566666666666666666666655566655666666666666665555 4555555555555555555
Q ss_pred CCCCCCCccccC
Q 000922 831 CSELSKLPENLG 842 (1223)
Q Consensus 831 ~~~l~~lp~~l~ 842 (1223)
|...+.+|..++
T Consensus 500 N~l~g~iP~~l~ 511 (623)
T PLN03150 500 NSLSGRVPAALG 511 (623)
T ss_pred CcccccCChHHh
Confidence 555555555443
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3.3e-05 Score=92.89 Aligned_cols=191 Identities=13% Similarity=0.073 Sum_probs=113.9
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHh--hccCcceeeeechh-hhc--cCCH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQIS--NDFEGRCFMANVRE-ESE--RGGL 309 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~~-~~~--~~~l 309 (1223)
.|...++++|-+..++.|...+..+. -...+.++|++|+||||+|+.+++.+. +.+...|+...... ... ..++
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv 87 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV 87 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce
Confidence 34566789999988888888885442 245679999999999999999998764 22333344321100 000 0000
Q ss_pred HHHHHHHHHHHhhhccCcCCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-h
Q 000922 310 VYLRERLYSEILEETLKIRTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD-R 381 (1223)
Q Consensus 310 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~ 381 (1223)
.. +... .....+....+++.+ .+++-++|+|+++.. ..++.|...+....+...+|++|.. .
T Consensus 88 ~e--------l~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 88 LE--------IDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred EE--------eccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 00 0000 000000122222222 245668899999864 4477777666554556666666654 3
Q ss_pred hhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 000922 382 QVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 382 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 438 (1223)
.+.... .....+++.+++.++..+.+.+.+-..+... ..+....|++.++|.+--
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~ 213 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRD 213 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 333322 2346899999999999999998875444321 235668899999998853
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=1.9e-07 Score=111.19 Aligned_cols=217 Identities=27% Similarity=0.283 Sum_probs=96.0
Q ss_pred ccEEEccCCCcccccccccccCccceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecCCC
Q 000922 729 VIELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLEST 808 (1223)
Q Consensus 729 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n 808 (1223)
|+.|++.+|.|+.+...+..+++|++|+|++| .++.+.. +..++.|+.|++++|.+... ..+..+++|+.+++++|
T Consensus 97 l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 97 LEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYN 172 (414)
T ss_pred eeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhheeccCcchhc--cCCccchhhhcccCCcc
Confidence 33333333444433333444444444444442 2222222 33344444444444433221 11222444444444444
Q ss_pred Cccccccc-cccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCccccccc--cccEEEccCCCCCCCCc
Q 000922 809 AVKELPSS-VEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLD--EVIELSFHGCRGLVLPP 885 (1223)
Q Consensus 809 ~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~--~L~~L~l~~~~~~~~p~ 885 (1223)
.+..+... +..+.+|+.+.+.+|..... ..+..+..+..+.+..|.+..+- .+..+. .|+.+++.++.....+.
T Consensus 173 ~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i~~~~~ 249 (414)
T KOG0531|consen 173 RIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNRISRSPE 249 (414)
T ss_pred hhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCccccccc
Confidence 44444332 34444444444444433211 11222223333344444444321 111111 25555555555544444
Q ss_pred cccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCccc----chh-hcCCCCCCEEeccCCCCCCCC
Q 000922 886 ILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSL----PAS-IKQLSRLRELYLSNCSMLQSL 953 (1223)
Q Consensus 886 ~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l----p~~-l~~l~~L~~L~L~~~~~l~~l 953 (1223)
.+..+..+..|++.+|.+..+. .+...+.+..+.+..|.+... ... ....+.++.+.+..++.-...
T Consensus 250 ~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 250 GLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cccccccccccchhhccccccc-cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 4556667777777777665432 233455566666666665421 111 455667777777777654433
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.23 E-value=4.8e-05 Score=87.70 Aligned_cols=183 Identities=16% Similarity=0.211 Sum_probs=107.0
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRER 315 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ 315 (1223)
|...++++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+++..........++. . ..+...+...+. +
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~-~~~~~~~~~~~~-~ 87 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-L-NASDERGIDVIR-N 87 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-e-ccccccchHHHH-H
Confidence 445577999999999999988543 3345799999999999999999997643321111221 1 001111111111 1
Q ss_pred HHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhh-cCCCc
Q 000922 316 LYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDR-QVFDK-CRVDK 391 (1223)
Q Consensus 316 ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~-~~~~~ 391 (1223)
.+.++.... .. ....+-++|+|+++.. +..+.+...+....+.+++|+++... .+... .....
T Consensus 88 ~i~~~~~~~-~~------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 88 KIKEFARTA-PV------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHHhcC-CC------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 111111100 00 0123568899998754 33445554444445567777777542 22221 11234
Q ss_pred eEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 000922 392 IYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 392 ~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 438 (1223)
.+++++++.++....+...+-..+.. -..+....+++.++|.+--
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 78999999999998888877544321 1234667888899998754
No 71
>PRK04195 replication factor C large subunit; Provisional
Probab=98.22 E-value=3.1e-05 Score=93.86 Aligned_cols=179 Identities=17% Similarity=0.155 Sum_probs=108.0
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCC--CCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGL--PDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
.|...++++|.+..++++..++..-. ...+.+.|+|++|+||||+|+++++.+. |+. +.+ +. +.... ...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-iel-na---sd~r~-~~~ 80 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IEL-NA---SDQRT-ADV 80 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEE-cc---ccccc-HHH
Confidence 35556789999999999999885421 2267899999999999999999999763 221 112 11 11111 112
Q ss_pred HHHHHHHHhhhccCcCCCCchHHHHHHHh-cCeEEEEecCCCCHH------HHHHHhcCCCCCCCCCEEEEEeCChh-hh
Q 000922 313 RERLYSEILEETLKIRTPSVPKCIKERLQ-QMKVFVVLDDVNKPE------QLDYLAGGLDRFGLGSRVVVTSRDRQ-VF 384 (1223)
Q Consensus 313 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsrIIiTTR~~~-v~ 384 (1223)
..+++..... .. .+. .++-+||+|+++... .+..+...+. ..+..||+|+.+.. ..
T Consensus 81 i~~~i~~~~~----~~----------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 81 IERVAGEAAT----SG----------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHHhhc----cC----------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 2222221111 00 011 367799999997642 2444443333 23445677765432 11
Q ss_pred h--hcCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHH
Q 000922 385 D--KCRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLAL 439 (1223)
Q Consensus 385 ~--~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 439 (1223)
. .-.....+++..++.++....+...+...+.... .+....|++.++|..-.+
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGDLRSA 199 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 1 1123467899999999999988887754432211 356788889998876543
No 72
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=5.6e-05 Score=90.94 Aligned_cols=190 Identities=16% Similarity=0.113 Sum_probs=110.8
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRER 315 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ 315 (1223)
|...+++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-.... ... ...+.-.-.+.
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~~-----~pCg~C~sC~~ 80 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG----VTS-----TPCEVCATCKA 80 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CCC-----CCCccCHHHHH
Confidence 4566889999999999999886442 2467899999999999999999986532110 000 00000000000
Q ss_pred HHHHHhhhccCcC--CCCchHHHHHH--------HhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-
Q 000922 316 LYSEILEETLKIR--TPSVPKCIKER--------LQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDRQ- 382 (1223)
Q Consensus 316 ll~~l~~~~~~~~--~~~~~~~l~~~--------L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~- 382 (1223)
+...-......+. +......+++. ..+++-++|+|+|+.. ...+.|+..+....++.++|++|.+..
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 0000000000000 00001111111 1255668999999865 456667666655556678888877643
Q ss_pred hhh-hcCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 383 VFD-KCRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 383 v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
+.. .......+++++++.++..+.+.+.+-..+.. -..+....|++.++|.+-
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLR 214 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 221 12334689999999999999988877543321 122456788899999774
No 73
>PF13173 AAA_14: AAA domain
Probab=98.20 E-value=6.7e-06 Score=80.54 Aligned_cols=119 Identities=17% Similarity=0.179 Sum_probs=76.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcC
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQM 343 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 343 (1223)
+++.|.|+.|+|||||++.++.+.. .-...+|+. ...... .... .. +..+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~----~~~~--~~-------------~~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD----RRLA--DP-------------DLLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH----HHHh--hh-------------hhHHHHHHhhccC
Confidence 6899999999999999999998765 233344442 111100 0000 00 0122333333447
Q ss_pred eEEEEecCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh------cCCCceEEecCCCHHHH
Q 000922 344 KVFVVLDDVNKPEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDK------CRVDKIYEVEGLNQNEA 403 (1223)
Q Consensus 344 r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~------~~~~~~~~l~~L~~~ea 403 (1223)
+.+++||+|.....|......+-..++..+|++|+........ .|....+++.+|+-.|-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8899999999888777766655544567899999998766532 13335789999988763
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=98.18 E-value=1.4e-05 Score=91.60 Aligned_cols=183 Identities=15% Similarity=0.213 Sum_probs=107.7
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhh-ccCcceeeeechhhhccCCHHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN-DFEGRCFMANVREESERGGLVYLR 313 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~l~~l~ 313 (1223)
.|...++++|.+..++.|..++..+ ..+.+.++|++|+||||+|+++++.+.. .|...+.-.+ .++..+...+
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~~v- 81 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGIDVV- 81 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHHHH-
Confidence 3556678999998888888877533 3345779999999999999999997633 3332211111 1122222222
Q ss_pred HHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CC
Q 000922 314 ERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKPE--QLDYLAGGLDRFGLGSRVVVTSRDR-QVFDKC-RV 389 (1223)
Q Consensus 314 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~ 389 (1223)
+............. -.++.-++|||+++... ..+.|...+....+.+++|+++... .+.... ..
T Consensus 82 r~~i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 82 RNKIKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 11211111100000 01346689999998743 3444544444445667888777543 222211 12
Q ss_pred CceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 390 DKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 390 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
...++++++++++....+...+-..+..-+ .+....|++.++|..-
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMR 195 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 357899999999999988887754332211 2456788888888663
No 75
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.17 E-value=1.3e-05 Score=80.47 Aligned_cols=123 Identities=20% Similarity=0.156 Sum_probs=69.3
Q ss_pred eehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhh
Q 000922 243 VGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILE 322 (1223)
Q Consensus 243 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~ 322 (1223)
+|++..+.++...+... ..+.+.|+|.+|+||||+|+++++.+...-...+++ +........ .........
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~-~~~~~~~~~---~~~~~~~~~--- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL-NASDLLEGL---VVAELFGHF--- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE-ehhhhhhhh---HHHHHhhhh---
Confidence 47788888888877442 346888999999999999999999875433333333 222211110 000000000
Q ss_pred hccCcCCCCchHHHHHHHhcCeEEEEecCCCCH--H---HHHHHhcCCCCC---CCCCEEEEEeCChh
Q 000922 323 ETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP--E---QLDYLAGGLDRF---GLGSRVVVTSRDRQ 382 (1223)
Q Consensus 323 ~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~---~~~~l~~~~~~~---~~gsrIIiTTR~~~ 382 (1223)
............++.++|+||++.. . .+..+....... ..+.+||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111222456789999999863 2 233333332221 36788888888654
No 76
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.17 E-value=1.6e-05 Score=82.93 Aligned_cols=173 Identities=18% Similarity=0.181 Sum_probs=95.8
Q ss_pred CCCCCCCceehhhHHHHHHHhhhc---CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCV---GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVY 311 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~ 311 (1223)
.|...+++||-+.-++.+.-++.. ..+....+.+||++|+||||||..+++.....|.. .. ..... ...+
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~s-g~~i~---k~~d 91 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TS-GPAIE---KAGD 91 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EE-CCC-----SCHH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---cc-chhhh---hHHH
Confidence 456778999999988887766542 23457788999999999999999999988776641 11 00000 0111
Q ss_pred HHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH--HHHHHHhcCCCC--------CCCC----------
Q 000922 312 LRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP--EQLDYLAGGLDR--------FGLG---------- 371 (1223)
Q Consensus 312 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~--------~~~g---------- 371 (1223)
+. .+...++ ++-+|.+|.+... .+-+.|.+.... .+++
T Consensus 92 l~---------------------~il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 92 LA---------------------AILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp HH---------------------HHHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred HH---------------------HHHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 11 1111122 3456777999763 344444433211 1222
Q ss_pred -CEEEEEeCChhhhhhcC--CCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 000922 372 -SRVVVTSRDRQVFDKCR--VDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 372 -srIIiTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 438 (1223)
+-|=-|||...+..-+. ..-+.+++..+.+|-.++..+.+-.-+. +-.++.+.+|++++.|-|--
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRi 217 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRI 217 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHH
Confidence 23446788754433221 2235689999999999999887743332 23347789999999999953
No 77
>PRK08727 hypothetical protein; Validated
Probab=98.16 E-value=4.9e-05 Score=82.75 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=96.4
Q ss_pred CCCceehhh-HHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHH
Q 000922 239 FEGLVGIYS-RIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLY 317 (1223)
Q Consensus 239 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll 317 (1223)
.++|++-.+ .+..+..+.. + .....+.|+|.+|+|||+||+++++....+...+.|+.. ......+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~----------~~~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL----------QAAAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH----------HHhhhhHH
Confidence 455665443 3444443332 2 223459999999999999999999987766555566631 11111110
Q ss_pred HHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCHH---HH-HHHhcCCCC-CCCCCEEEEEeCCh---------hh
Q 000922 318 SEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKPE---QL-DYLAGGLDR-FGLGSRVVVTSRDR---------QV 383 (1223)
Q Consensus 318 ~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~-~~l~~~~~~-~~~gsrIIiTTR~~---------~v 383 (1223)
. ..+.+ .+.-+|||||++... .+ +.+...+.. ...|..||+|++.. .+
T Consensus 86 ----------------~-~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL 147 (233)
T PRK08727 86 ----------------D-ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDL 147 (233)
T ss_pred ----------------H-HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHH
Confidence 1 11112 133589999997431 12 222221111 13466799999852 22
Q ss_pred hhhcCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 000922 384 FDKCRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 384 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 438 (1223)
...+.....+++++++.++-.+++.+++...... -..+....+++.++|-.-+
T Consensus 148 ~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~--l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 148 RSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA--LDEAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHH
Confidence 2222334689999999999999999877543321 1224556777777665543
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=4.1e-05 Score=91.81 Aligned_cols=196 Identities=12% Similarity=0.109 Sum_probs=111.5
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhcc-CcceeeeechhhhccCCHHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDF-EGRCFMANVREESERGGLVYLR 313 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~l~~l~ 313 (1223)
.|...+++||-+..++.|...+..+. -.+.+.++|..|+||||+|+.+.+.+-..= +..--+. ....+.-.-.
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC 84 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRAC 84 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHH
Confidence 35567889999999999999885442 245678999999999999999998653210 0000000 0000000000
Q ss_pred HHHHH----HHhhhc-cCcCCCCchHHHHHH-----HhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-
Q 000922 314 ERLYS----EILEET-LKIRTPSVPKCIKER-----LQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD- 380 (1223)
Q Consensus 314 ~~ll~----~l~~~~-~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~- 380 (1223)
+.+.. ++..-. ......+....+.+. ..++.-++|||+++.. ...+.|+..+.......++|++|.+
T Consensus 85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 00000 000000 000000111112222 1345668999999865 4577788777665566676666554
Q ss_pred hhhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 000922 381 RQVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 381 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 438 (1223)
..+.... .....++++.++.++..+.+.+.+-..+... ..+....|++.++|.|.-
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRD 221 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 4443221 2236899999999999999887764433221 124557889999999853
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=5.9e-05 Score=93.51 Aligned_cols=188 Identities=14% Similarity=0.134 Sum_probs=114.2
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc-c-Cc-ceeeeec-h----------
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND-F-EG-RCFMANV-R---------- 301 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~-~~~~~~~-~---------- 301 (1223)
|...+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+-.. . .. -|..... .
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 4566789999999999998885432 24556899999999999999999876432 1 00 0111000 0
Q ss_pred ---hhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEE
Q 000922 302 ---EESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVV 376 (1223)
Q Consensus 302 ---~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIi 376 (1223)
......++..+ +++...+. ..-..+++-++|||+++.. ...+.|+..+.......++|+
T Consensus 91 iEidAas~~kVDdI-ReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EEeccccccCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 00000111111 11111110 0112356779999999764 557777777665556677776
Q ss_pred EeCCh-hhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 000922 377 TSRDR-QVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL-ALKVL 442 (1223)
Q Consensus 377 TTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~l 442 (1223)
+|.+. .+... ......|++++|+.++..+++.+.+-..+. .-..+....|++.++|.|- |+..+
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66553 34322 223468999999999999999886643221 1123566889999999885 44433
No 80
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=6e-05 Score=86.26 Aligned_cols=176 Identities=15% Similarity=0.160 Sum_probs=108.4
Q ss_pred CCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhh------ccCcceeeeechhhhccCCHHHHH
Q 000922 240 EGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN------DFEGRCFMANVREESERGGLVYLR 313 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~~~~~~~l~~l~ 313 (1223)
++++|-+..++.+...+..+ .-.+...++|+.|+||||+|+.++..+-. +.|...|.. . .....++.++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~--~~~~i~v~~ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I--NKKSIGVDDIR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c--cCCCCCHHHHH
Confidence 56789888888898888543 23467789999999999999999986522 233222321 0 11111222221
Q ss_pred HHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCC--CCHHHHHHHhcCCCCCCCCCEEEEEeCChhhh-hh-cCC
Q 000922 314 ERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDV--NKPEQLDYLAGGLDRFGLGSRVVVTSRDRQVF-DK-CRV 389 (1223)
Q Consensus 314 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv--~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~-~~-~~~ 389 (1223)
++...+... -..+++=++|+|++ .+...++.|+..+....+++.+|++|.+.+.+ .. ...
T Consensus 80 -~~~~~~~~~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 80 -NIIEEVNKK---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred -HHHHHHhcC---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 121111100 01133445555655 45567888888888777899999888765322 21 123
Q ss_pred CceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 000922 390 DKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKV 441 (1223)
Q Consensus 390 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 441 (1223)
...+++.++++++....+.+.+. . .. .+.+..++.+++|.|..+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~--~-~~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYN--D-IK---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhc--C-CC---HHHHHHHHHHcCCCHHHHHH
Confidence 46899999999999887765431 1 11 23467789999999865443
No 81
>PTZ00202 tuzin; Provisional
Probab=98.11 E-value=1.6e-05 Score=89.88 Aligned_cols=193 Identities=14% Similarity=0.116 Sum_probs=117.7
Q ss_pred ccCCCCCCCCchhHH--HHHHHHHHHHhhccC-----CCCCCCCCCceehhhHHHHHHHhhhcCC-CCeEEEEEEccCCC
Q 000922 203 NLSGWDSMNIRPEAK--LVDEIIEDILKKLKD-----KSFSSDFEGLVGIYSRIEQIKSLLCVGL-PDFQIIGIWGMGGI 274 (1223)
Q Consensus 203 ~~~g~~~~~~~~e~~--~i~~i~~~v~~~l~~-----~~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGi 274 (1223)
..-||.+++++.+.. ..+-.++...+.++. ...|.+..+|+||+.++.+|...|...+ ...+++.|.|++|+
T Consensus 218 ~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~ 297 (550)
T PTZ00202 218 SVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGC 297 (550)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCC
Confidence 334577776655433 445556666666521 1356778899999999999999996433 34579999999999
Q ss_pred chHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH-----h-cCeEEEE
Q 000922 275 GKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL-----Q-QMKVFVV 348 (1223)
Q Consensus 275 GKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlV 348 (1223)
|||||++.+..... ..+++.|.+ +..++...++.+++.... ....+....|.+.+ . +++.+||
T Consensus 298 GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLI 366 (550)
T PTZ00202 298 GKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLV 366 (550)
T ss_pred CHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999997653 235665543 457888888888774211 11112234444333 2 6677777
Q ss_pred ecCC--CCHHH----HHHHhcCCCCCCCCCEEEEEeCChhhhhh---cCCCceEEecCCCHHHHHHHHHHh
Q 000922 349 LDDV--NKPEQ----LDYLAGGLDRFGLGSRVVVTSRDRQVFDK---CRVDKIYEVEGLNQNEALEHFSNY 410 (1223)
Q Consensus 349 LDdv--~~~~~----~~~l~~~~~~~~~gsrIIiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~ 410 (1223)
+-== .+... .-.|+. ...-|.|++----+.+-.. ...-..|-++.++.++|.++-.+.
T Consensus 367 I~lreg~~l~rvyne~v~la~----drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 367 LKLREGSSLQRVYNEVVALAC----DRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred EEecCCCcHHHHHHHHHHHHc----cchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 6421 22211 112221 1345667764433322111 112357999999999999887654
No 82
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.11 E-value=4.1e-06 Score=88.08 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=35.9
Q ss_pred CceehhhHHHHHHHhhhc-CCCCeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 241 GLVGIYSRIEQIKSLLCV-GLPDFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 241 ~~vGr~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
.||||+++++++...|.. .....+.+.|+|.+|+|||+|+++++.++..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999952 33457999999999999999999999988777
No 83
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=0.00011 Score=84.77 Aligned_cols=200 Identities=14% Similarity=0.046 Sum_probs=112.0
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhh-c-cCcceeeeechhhhccCCHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN-D-FEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~-F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
.|...++++|-+...+.+.+.+..+. -...+.++|+.|+||+|+|..++..+-. . ......-... ......+--..
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~-~~l~~~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP-TSLAIDPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc-ccccCCCCChH
Confidence 45566789999999899998885442 2456889999999999999999986521 1 1100000000 00000000000
Q ss_pred HHHHHHHHhh----------hccCcCCCCc-hHHHHH---HHh-----cCeEEEEecCCCCH--HHHHHHhcCCCCCCCC
Q 000922 313 RERLYSEILE----------ETLKIRTPSV-PKCIKE---RLQ-----QMKVFVVLDDVNKP--EQLDYLAGGLDRFGLG 371 (1223)
Q Consensus 313 ~~~ll~~l~~----------~~~~~~~~~~-~~~l~~---~L~-----~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 371 (1223)
.+.+...... .......... .+.+++ .+. +.+.++|+||++.. .....|+..+....++
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111000000 0000000011 333333 322 45678999999764 4466666665554556
Q ss_pred CEEEEEeCChh-hhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 000922 372 SRVVVTSRDRQ-VFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKVL 442 (1223)
Q Consensus 372 srIIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 442 (1223)
+.+|++|.+.. +... ......+.+.+++.++..+++...... ..+ +....++..++|.|+....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LPD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CCH---HHHHHHHHHcCCCHHHHHHH
Confidence 77777777653 3322 223468999999999999999876411 111 12267899999999855444
No 84
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.4e-07 Score=99.21 Aligned_cols=174 Identities=22% Similarity=0.204 Sum_probs=102.8
Q ss_pred CccEEEccCCCcc--cccccccccCccceeeeccccccccCccccccCCcccEEeecCCcCcccch--hhhcccccceee
Q 000922 728 NVIELDLKGTAIE--EIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFP--EILEKMECLEYI 803 (1223)
Q Consensus 728 ~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p--~~l~~l~~L~~L 803 (1223)
.|++|||+.+.|+ .+..-+..+.+|+.|.|.++..-..+-..|.+=.+|+.|+|++|+.+.... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5777777777776 455566778888888888877666666667778889999999888766543 346677888888
Q ss_pred ecCCCCccc--ccccccc-CCCCcEEEccCCCCCC---CCccccCCCCCCceeecCCcccccCCccccccccccEEEccC
Q 000922 804 DLESTAVKE--LPSSVEQ-LKGLRELILEDCSELS---KLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHG 877 (1223)
Q Consensus 804 ~L~~n~l~~--lp~~i~~-l~~L~~L~L~~~~~l~---~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~ 877 (1223)
+|+.+.+.. +...+.+ -.+|+.|+|+||...- .+..-...+++|..|+|+ +
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLS-----------------------D 322 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLS-----------------------D 322 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccc-----------------------c
Confidence 887776642 1111222 2356677777764321 111112334444444444 4
Q ss_pred CCCCC--CCccccCCCCCCEEEcCCCCCCC--CchhhcCCCCCcEEeCCCC
Q 000922 878 CRGLV--LPPILSGLSSLTKLDLSDCDVME--IPQDIGRASSLEILDISGN 924 (1223)
Q Consensus 878 ~~~~~--~p~~~~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~Ls~n 924 (1223)
|...+ ....+..++.|++|.++.|-... .--.+...|+|.+|++.|+
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 43322 11234455566666666654321 1112455677777777664
No 85
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.10 E-value=3.8e-05 Score=83.68 Aligned_cols=174 Identities=15% Similarity=0.202 Sum_probs=95.9
Q ss_pred CCCCce-ehhhHH-HHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHH
Q 000922 238 DFEGLV-GIYSRI-EQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRER 315 (1223)
Q Consensus 238 ~~~~~v-Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ 315 (1223)
..++|+ |..... ..+..+.. +....+.+.|+|.+|+|||+||+++++.....=....|+... . +...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~---------~~~~ 84 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-S---------PLLA 84 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-H---------hHHH
Confidence 345555 544433 34444433 223456788999999999999999999764432233444211 1 0000
Q ss_pred HHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH--HHHHHHhcCCCCC-CCCC-EEEEEeCChhhhh------
Q 000922 316 LYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP--EQLDYLAGGLDRF-GLGS-RVVVTSRDRQVFD------ 385 (1223)
Q Consensus 316 ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~-~~gs-rIIiTTR~~~v~~------ 385 (1223)
+ .. ....-++|+||++.. .+.+.+...+... ..|. .||+|++......
T Consensus 85 ~---------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 85 F---------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred H---------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 0 00 122346888999653 2222332222111 2344 3666666432111
Q ss_pred --hcCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhh
Q 000922 386 --KCRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKVLGSFL 446 (1223)
Q Consensus 386 --~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 446 (1223)
.+.....++++++++++-.+++.+.+-..... --++....+++...|++..+..+...|
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ--LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22223688999999988777776654322211 122566777888899998877666544
No 86
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.09 E-value=9.6e-06 Score=79.87 Aligned_cols=112 Identities=18% Similarity=0.247 Sum_probs=69.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhc-----cCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCc-hHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISND-----FEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSV-PKCI 336 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l 336 (1223)
-+.+.|+|.+|+|||++++.+++..... -...+|+. . ........+.+.++..+............ ...+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-C---PSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-H---HHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-e---CCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4689999999999999999999976553 22234442 2 22336778888888887655444111112 4556
Q ss_pred HHHHhcCe-EEEEecCCCCH---HHHHHHhcCCCCCCCCCEEEEEeCC
Q 000922 337 KERLQQMK-VFVVLDDVNKP---EQLDYLAGGLDRFGLGSRVVVTSRD 380 (1223)
Q Consensus 337 ~~~L~~kr-~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIIiTTR~ 380 (1223)
.+.+...+ .+||+|+++.. +.++.+..... ..+.+||++.++
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66666554 59999999776 23555544333 667778887765
No 87
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.08 E-value=3.3e-05 Score=96.44 Aligned_cols=172 Identities=19% Similarity=0.241 Sum_probs=100.6
Q ss_pred CCCCCCceehhhHHH---HHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHH
Q 000922 236 SSDFEGLVGIYSRIE---QIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
|...++++|.+..+. .+...+.. .....+.++|++|+||||+|+.+++.....|. .+..+ ..++..+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~i~di 93 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAGVKDL 93 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhhhHHH
Confidence 455678999888774 45555533 34567789999999999999999997765552 12110 0111111
Q ss_pred HHHHHHHHhhhccCcCCCCchHHHHHHH--hcCeEEEEecCCCC--HHHHHHHhcCCCCCCCCCEEEEE--eCChh--hh
Q 000922 313 RERLYSEILEETLKIRTPSVPKCIKERL--QQMKVFVVLDDVNK--PEQLDYLAGGLDRFGLGSRVVVT--SRDRQ--VF 384 (1223)
Q Consensus 313 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiT--TR~~~--v~ 384 (1223)
++.+ ....+.+ .+++.++|||||+. ..+.+.|.... ..|+.++|+ |.+.. +.
T Consensus 94 -r~~i----------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 94 -RAEV----------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVN 153 (725)
T ss_pred -HHHH----------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhh
Confidence 1111 1111111 24678999999974 45566666543 345555554 33321 11
Q ss_pred hh-cCCCceEEecCCCHHHHHHHHHHhhhcC-----CCCChhHHHHHHHHHHHhCCCch
Q 000922 385 DK-CRVDKIYEVEGLNQNEALEHFSNYAFRQ-----NICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 385 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~-----~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
.. .....++++++|+.++...++.+.+-.. .....-..+....|++++.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11 1124579999999999999998765310 11111223456778888888653
No 88
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=9.3e-05 Score=89.14 Aligned_cols=183 Identities=15% Similarity=0.152 Sum_probs=110.2
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhcc---------------------Ccc
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDF---------------------EGR 294 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 294 (1223)
|...+++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.... ...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 456678999999999999888543 2345678999999999999999998653211 111
Q ss_pred eeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHH-HHhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCC
Q 000922 295 CFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKE-RLQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLG 371 (1223)
Q Consensus 295 ~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 371 (1223)
+.+. .....++..+ ++++.. +.. -..+++-++|+|+++.. ...+.|+..+......
T Consensus 91 ieid----aas~~gvd~i-r~ii~~----------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 91 IEID----AASRTGVEET-KEILDN----------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred EEee----cccccCHHHH-HHHHHH----------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 1110 0001111111 111111 110 12356679999999754 4567777666655566
Q ss_pred CEEEEEeCC-hhhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 000922 372 SRVVVTSRD-RQVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL-ALKVL 442 (1223)
Q Consensus 372 srIIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~l 442 (1223)
..+|++|.+ ..+... ......+++++++.++..+.+.+.+-..+. .-..+....|++.++|.+- |+..+
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666655544 333322 223478999999999988888776543321 1123455778888888663 44444
No 89
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.06 E-value=0.00015 Score=77.88 Aligned_cols=158 Identities=15% Similarity=0.201 Sum_probs=90.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhccCc--ceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHH
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEG--RCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKER 339 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 339 (1223)
....+.|||..|.|||.|.+++++.+....+. ++|+. .....+.+...+.. .....+++.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~--------~~~~~~~~~ 94 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD--------GEIEEFKDR 94 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT--------TSHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc--------ccchhhhhh
Confidence 34557899999999999999999987765442 33442 12233333333322 124556666
Q ss_pred HhcCeEEEEecCCCCHH---HHH-HHhcCCCC-CCCCCEEEEEeCChh---------hhhhcCCCceEEecCCCHHHHHH
Q 000922 340 LQQMKVFVVLDDVNKPE---QLD-YLAGGLDR-FGLGSRVVVTSRDRQ---------VFDKCRVDKIYEVEGLNQNEALE 405 (1223)
Q Consensus 340 L~~kr~LlVLDdv~~~~---~~~-~l~~~~~~-~~~gsrIIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~ 405 (1223)
+++ -=+|++|||+... .|+ .+...+.. ...|-+||+|++... +...+...-++++++++.++..+
T Consensus 95 ~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 95 LRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp HCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred hhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 664 4467899996532 122 22221111 135778999996531 22223345689999999999999
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 000922 406 HFSNYAFRQNICPKDFLVLSERIVFYANGNPLALK 440 (1223)
Q Consensus 406 Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 440 (1223)
++.+.|-..... -.++++.-+++.+.+..-.|.
T Consensus 174 il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 174 ILQKKAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 999988654432 223556666666655554443
No 90
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=9.4e-05 Score=86.72 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=110.4
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccC---cceeeeechhhhccCCHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFE---GRCFMANVREESERGGLVY 311 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~~~~~l~~ 311 (1223)
.|...+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+-..-. ..|.... .-..
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~--------sC~~ 83 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT--------SCLE 83 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc--------HHHH
Confidence 35566789999999999988885443 2346889999999999999999986532210 0011100 0000
Q ss_pred HHHHHHHHHhhhcc-CcCCCCchHHHHHH-----HhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-hh
Q 000922 312 LRERLYSEILEETL-KIRTPSVPKCIKER-----LQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD-RQ 382 (1223)
Q Consensus 312 l~~~ll~~l~~~~~-~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~~ 382 (1223)
+......++..-.. .....+....+.+. ..++.-++|+|+++.. +.+++|+..+........+|++|.+ ..
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 00000000000000 00000112222222 2356678999999764 4577887776554445555545544 44
Q ss_pred hhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 383 VFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 383 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
+.... .....|.+.+++.++..+.+.+.+-..+.. -..+....|++.++|.+-
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHH
Confidence 43322 233679999999999998888876443321 123566889999999884
No 91
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.05 E-value=3.4e-05 Score=90.52 Aligned_cols=172 Identities=18% Similarity=0.294 Sum_probs=97.7
Q ss_pred CCCCceehhhHHHHHHHhhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhcc
Q 000922 238 DFEGLVGIYSRIEQIKSLLCV-----------GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESER 306 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 306 (1223)
..+++.|++..++++.+.+.. +-...+-|.++|++|.|||++|++++++....|- .+ ...
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v-~~~----- 199 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RV-VGS----- 199 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Ee-ehH-----
Confidence 446788999999998876532 1123567899999999999999999997653321 11 110
Q ss_pred CCHHHHHHHHHHHHhhhccCcCCCCchH-HHHHHHhcCeEEEEecCCCCHH-------------H---HHHHhcCCCCC-
Q 000922 307 GGLVYLRERLYSEILEETLKIRTPSVPK-CIKERLQQMKVFVVLDDVNKPE-------------Q---LDYLAGGLDRF- 368 (1223)
Q Consensus 307 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~~-------------~---~~~l~~~~~~~- 368 (1223)
.+. ....+. ...... .+...-...+.+|+|||++... . +..+.......
T Consensus 200 ----~l~----~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 200 ----ELV----QKFIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred ----HHh----Hhhccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111 100000 000011 1111123467899999997641 1 22233222211
Q ss_pred -CCCCEEEEEeCChhhhhh-----cCCCceEEecCCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHHhCCC
Q 000922 369 -GLGSRVVVTSRDRQVFDK-----CRVDKIYEVEGLNQNEALEHFSNYAFRQNICP-KDFLVLSERIVFYANGN 435 (1223)
Q Consensus 369 -~~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~Gl 435 (1223)
..+.+||.||........ ...+..++++..+.++..++|..++.+..... .++ ..+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 235567777775433221 12456899999999999999998875433222 233 4455555554
No 92
>PRK09087 hypothetical protein; Validated
Probab=98.04 E-value=7.2e-05 Score=80.71 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=84.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQ 342 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 342 (1223)
.+.+.|||.+|+|||+|+++++.... ..|+.. ..+...+.. .+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~--------------------~~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAAN--------------------AAAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHH--------------------hhhc
Confidence 46689999999999999999887532 224421 011111111 1111
Q ss_pred CeEEEEecCCCCH----HHHHHHhcCCCCCCCCCEEEEEeCC---------hhhhhhcCCCceEEecCCCHHHHHHHHHH
Q 000922 343 MKVFVVLDDVNKP----EQLDYLAGGLDRFGLGSRVVVTSRD---------RQVFDKCRVDKIYEVEGLNQNEALEHFSN 409 (1223)
Q Consensus 343 kr~LlVLDdv~~~----~~~~~l~~~~~~~~~gsrIIiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 409 (1223)
-+|++||++.. +.+-.+.... ...|..||+|++. +.+...+....++++++++.++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 27888999542 2222222221 1347789999874 23333445567999999999999999998
Q ss_pred hhhcCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 000922 410 YAFRQNICPKDFLVLSERIVFYANGNPLALKV 441 (1223)
Q Consensus 410 ~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 441 (1223)
++-.... .-.+++..-|++.+.|..-++..
T Consensus 165 ~~~~~~~--~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 165 LFADRQL--YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHcCC--CCCHHHHHHHHHHhhhhHHHHHH
Confidence 8754321 12235667777777776655543
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=7.3e-05 Score=90.88 Aligned_cols=192 Identities=15% Similarity=0.096 Sum_probs=108.7
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRE 314 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~ 314 (1223)
.|...+++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+.+-..-... ...+..+ ...+
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~pCg~C--------~sCr 80 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEPCGVC--------QSCT 80 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCCCccc--------HHHH
Confidence 35567889999999999999886432 246789999999999999999988642211000 0000000 0000
Q ss_pred HHHHHHhhhccCc--CCCCchHHHHHHH--------hcCeEEEEecCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCChh
Q 000922 315 RLYSEILEETLKI--RTPSVPKCIKERL--------QQMKVFVVLDDVNKPE--QLDYLAGGLDRFGLGSRVVVTSRDRQ 382 (1223)
Q Consensus 315 ~ll~~l~~~~~~~--~~~~~~~~l~~~L--------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~~~ 382 (1223)
.+...-..+...+ ......+.+++.+ .+++-++|+|+++... ..+.|+..+.......++|++|.+..
T Consensus 81 ~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~ 160 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160 (709)
T ss_pred HHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 0000000000000 0000011222221 2456789999998653 35555555544445667777776542
Q ss_pred -hhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 000922 383 -VFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 383 -v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 438 (1223)
+... .+....+++..++.++....+.+.+-..+..- ..+....|++.++|.+.-
T Consensus 161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRD 216 (709)
T ss_pred ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHH
Confidence 2221 12235688889999999999988765433211 224668899999998843
No 94
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.4e-07 Score=97.56 Aligned_cols=172 Identities=22% Similarity=0.236 Sum_probs=101.1
Q ss_pred cccEEeecCCcCcc-cchhhhcccccceeeecCCCCcc-ccccccccCCCCcEEEccCCCCCCCCc--cccCCCCCCcee
Q 000922 775 SLHLLCLYNCSNFE-IFPEILEKMECLEYIDLESTAVK-ELPSSVEQLKGLRELILEDCSELSKLP--ENLGNLKSLKRL 850 (1223)
Q Consensus 775 ~L~~L~L~~c~~~~-~~p~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L 850 (1223)
.|++|+|++..+.. .+-..+..+.+|+.|.|.++.+. .+-..+..-.+|+.|+|+.|+...... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 36666666644432 23345566777777777777776 444556777788888888877655432 235667777777
Q ss_pred ecCCcccccC--CccccccccccEEEccCCCCCCCCccccCCCCCCEEEcCCCCC----CCCchhhcCCCCCcEEeCCCC
Q 000922 851 FAKRSAISKL--PSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDV----MEIPQDIGRASSLEILDISGN 924 (1223)
Q Consensus 851 ~l~~n~i~~l--p~~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l----~~lp~~l~~l~~L~~L~Ls~n 924 (1223)
++++|.+..- ...+.+ --++|+.|+|++|.- +.+..-...+++|..||||+|
T Consensus 266 NlsWc~l~~~~Vtv~V~h----------------------ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAH----------------------ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred CchHhhccchhhhHHHhh----------------------hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 7777755421 000000 113455555555421 122222345677777777776
Q ss_pred CCc--ccchhhcCCCCCCEEeccCCCCCCCCCC------ccCCCcEEeccCCcC
Q 000922 925 DFD--SLPASIKQLSRLRELYLSNCSMLQSLPE------LPLRVKLLDASNCKQ 970 (1223)
Q Consensus 925 ~l~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~------l~~~L~~L~~~~c~~ 970 (1223)
..- ..-..+..++.|++|.++.|..+ +|+ ..|+|.+|++.+|-+
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 432 23345677888888888888543 232 246788888888753
No 95
>PRK05642 DNA replication initiation factor; Validated
Probab=98.01 E-value=0.00015 Score=78.97 Aligned_cols=149 Identities=18% Similarity=0.265 Sum_probs=88.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQ 342 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 342 (1223)
...+.|||..|+|||.||+++++.+..+-..++|+.. . .+... ...+.+.+++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~---------~~~~~-----------------~~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-A---------ELLDR-----------------GPELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-H---------HHHhh-----------------hHHHHHhhhh
Confidence 3678999999999999999999987655445566631 1 11110 0122333333
Q ss_pred CeEEEEecCCCCH---HHHHH-HhcCCCC-CCCCCEEEEEeCChh---------hhhhcCCCceEEecCCCHHHHHHHHH
Q 000922 343 MKVFVVLDDVNKP---EQLDY-LAGGLDR-FGLGSRVVVTSRDRQ---------VFDKCRVDKIYEVEGLNQNEALEHFS 408 (1223)
Q Consensus 343 kr~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gsrIIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~ 408 (1223)
-. ++|+||+... .+|+. +...+.. ...|.+||+|++... +...++...++++++++.++-.+++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 33 6788999632 23322 3322221 135678999887532 11122334679999999999999998
Q ss_pred HhhhcCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 000922 409 NYAFRQNICPKDFLVLSERIVFYANGNPLALKV 441 (1223)
Q Consensus 409 ~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 441 (1223)
.++......- .+++..-+++++.|..-++..
T Consensus 177 ~ka~~~~~~l--~~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 177 LRASRRGLHL--TDEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHH
Confidence 7765432211 135666777777666544443
No 96
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.00 E-value=0.00013 Score=79.49 Aligned_cols=170 Identities=14% Similarity=0.204 Sum_probs=95.2
Q ss_pred CCce-ehhh-HHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHH
Q 000922 240 EGLV-GIYS-RIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLY 317 (1223)
Q Consensus 240 ~~~v-Gr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll 317 (1223)
++|+ |-.. .+..+..+.. ....+.+.|+|++|+|||+||+++++....+-..+.|+.. .... . .
T Consensus 22 d~f~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-~~~~------~----~- 87 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-DKRA------W----F- 87 (235)
T ss_pred cccccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-HHHh------h----h-
Confidence 4444 6322 3344444432 2234678999999999999999999977655444455531 1100 0 0
Q ss_pred HHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH---HHHHH-HhcCCCC-CCCC-CEEEEEeCCh---------h
Q 000922 318 SEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP---EQLDY-LAGGLDR-FGLG-SRVVVTSRDR---------Q 382 (1223)
Q Consensus 318 ~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~-l~~~~~~-~~~g-srIIiTTR~~---------~ 382 (1223)
...+.+.+.. --++++||+... .+|+. +...+.. ...| .++|+||+.. .
T Consensus 88 ---------------~~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 88 ---------------VPEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred ---------------hHHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHH
Confidence 0011111211 237889999653 22322 1111111 1133 4799999853 2
Q ss_pred hhhhcCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 000922 383 VFDKCRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKV 441 (1223)
Q Consensus 383 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 441 (1223)
+...+....+++++++++++-.+++.+++..... .--+++..-+++.+.|..-++..
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF--ELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHHHH
Confidence 2233445578999999999999998886644322 12235667777777766544443
No 97
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00011 Score=88.06 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=110.1
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccC-------cceeeeechhhhccC
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFE-------GRCFMANVREESERG 307 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~~~~~~~~~ 307 (1223)
.|....++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-..-. ..|....
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~-------- 86 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT-------- 86 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh--------
Confidence 35566789999999998888774432 2467889999999999999999986532110 0011100
Q ss_pred CHHHHHHHHHHHHhhhccCcC--CCCchHHHHHH--------HhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEE
Q 000922 308 GLVYLRERLYSEILEETLKIR--TPSVPKCIKER--------LQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVV 375 (1223)
Q Consensus 308 ~l~~l~~~ll~~l~~~~~~~~--~~~~~~~l~~~--------L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrII 375 (1223)
-...+...........+ .......+++. ..+++-++|+|+++.. ..++.|...+....+.+.+|
T Consensus 87 ----~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI 162 (507)
T PRK06645 87 ----NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFI 162 (507)
T ss_pred ----HHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEE
Confidence 00000000000000000 00001112111 2356678999999874 45777776666555666666
Q ss_pred EEe-CChhhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 376 VTS-RDRQVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 376 iTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
++| +...+.... .....+++.+++.++....+.+.+-..+... ..+....|++.++|.+-
T Consensus 163 ~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 163 FATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSAR 224 (507)
T ss_pred EEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 544 444444332 2346799999999999999998875443221 12455778889999774
No 98
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00017 Score=83.09 Aligned_cols=246 Identities=18% Similarity=0.191 Sum_probs=141.0
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcC--CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcc--eeeeechhhhccCCHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVG--LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGR--CFMANVREESERGGLV 310 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~--~~~~~~~~~~~~~~l~ 310 (1223)
+...++.+.+|+++++++...|..- .....-+.|+|.+|.|||+.++.+++++....... +++.+ .......
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc----~~~~t~~ 87 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINC----LELRTPY 87 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEee----eeCCCHH
Confidence 3445566999999999999877532 22223489999999999999999999887765444 55532 2233455
Q ss_pred HHHHHHHHHHhhhcc-CcCCCCchHHHHHHHh--cCeEEEEecCCCCHHH-----HHHHhcCCCCCCCCCEE--EEEeCC
Q 000922 311 YLRERLYSEILEETL-KIRTPSVPKCIKERLQ--QMKVFVVLDDVNKPEQ-----LDYLAGGLDRFGLGSRV--VVTSRD 380 (1223)
Q Consensus 311 ~l~~~ll~~l~~~~~-~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~-----~~~l~~~~~~~~~gsrI--IiTTR~ 380 (1223)
++..+++.++..... +....+....+.+.+. ++.+++|||+++.... +-.|....... .++| |..+-+
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~ 165 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEecc
Confidence 677777776652111 1222222566666665 5789999999976432 22333222212 4544 334444
Q ss_pred hhhhh--------hcCCCceEEecCCCHHHHHHHHHHhh---hcCCCCChhHHHHHHHHHHHhCCCc-hHHHHHHhh--h
Q 000922 381 RQVFD--------KCRVDKIYEVEGLNQNEALEHFSNYA---FRQNICPKDFLVLSERIVFYANGNP-LALKVLGSF--L 446 (1223)
Q Consensus 381 ~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~lg~~--L 446 (1223)
..... .++.. .+..++-+.+|-...+..++ |......++..+++..++..-+|-. .|+..+-.. +
T Consensus 166 ~~~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ei 244 (366)
T COG1474 166 DKFLDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEI 244 (366)
T ss_pred HHHHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 33222 22222 36778888888888888765 4444555566666677777666632 344433222 2
Q ss_pred ccC------CHHHHHHHHhhhccCCCCcHHhHHHHhHhcccHhHHhHhheeecc
Q 000922 447 QRK------CKLQWENALKNLTRISDPDIYDMLKISYNELKQEEKSIFLDIACF 494 (1223)
Q Consensus 447 ~~~------~~~~w~~~l~~l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f 494 (1223)
+.+ +.+.-..+.+... .....-....|+.++|-.+..++.-
T Consensus 245 Ae~~~~~~v~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~ki~L~~i~~~ 291 (366)
T COG1474 245 AEREGSRKVSEDHVREAQEEIE-------RDVLEEVLKTLPLHQKIVLLAIVEL 291 (366)
T ss_pred HHhhCCCCcCHHHHHHHHHHhh-------HHHHHHHHHcCCHhHHHHHHHHHHh
Confidence 211 1222222211111 1233344778888887776655544
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=9.4e-05 Score=90.45 Aligned_cols=195 Identities=13% Similarity=0.113 Sum_probs=112.1
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRER 315 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ 315 (1223)
|...+++||-+.-++.|...+..+. -...+.++|..|+||||+|+.+++.+-..... . ....+.-...++
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~-----~~pCg~C~~C~~ 81 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T-----ATPCGECDNCRE 81 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C-----CCCCCCCHHHHH
Confidence 5567889999999999998885442 23557899999999999999999865332100 0 000000001111
Q ss_pred HHHH----Hhh-hccCcCCCCchHHHHHH-----HhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-hh
Q 000922 316 LYSE----ILE-ETLKIRTPSVPKCIKER-----LQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD-RQ 382 (1223)
Q Consensus 316 ll~~----l~~-~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~~ 382 (1223)
+... +.. ........+....+.+. ..+++-++|+|+++.. ...+.|+..+....+..++|++|.+ ..
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 1000 000 00000000011112111 2356678999999764 4577777666555556666665555 44
Q ss_pred hhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 000922 383 VFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL-ALKVL 442 (1223)
Q Consensus 383 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~l 442 (1223)
+... ......|+++.++.++..+.+.+.+-..+... ..+....|++.++|.+- |+..+
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4322 22346899999999999999987663332211 12455788999999885 44443
No 100
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.97 E-value=3.5e-05 Score=83.62 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=89.6
Q ss_pred CCCCCCceehhhHHHH---HHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHH
Q 000922 236 SSDFEGLVGIYSRIEQ---IKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
|...++.||.+..+.+ |.+++ +.+....+.+||++|.||||||+.+...-+.+- ..|+..........++..+
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVRDI 209 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHHHH
Confidence 3444566666554433 22222 345677888999999999999999998544432 3444322111111122222
Q ss_pred HHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCC--HHHHHHHhcCCCCCCCCCEEEE--EeCChhh---hh
Q 000922 313 RERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNK--PEQLDYLAGGLDRFGLGSRVVV--TSRDRQV---FD 385 (1223)
Q Consensus 313 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIi--TTR~~~v---~~ 385 (1223)
.++- .=...+.++|..|.+|.|.. ..|-+.+++. ...|+-++| ||.+... ..
T Consensus 210 fe~a------------------q~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 210 FEQA------------------QNEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred HHHH------------------HHHHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhHH
Confidence 2111 01123567899999999954 4556666655 356776665 6666532 11
Q ss_pred hcCCCceEEecCCCHHHHHHHHHHh
Q 000922 386 KCRVDKIYEVEGLNQNEALEHFSNY 410 (1223)
Q Consensus 386 ~~~~~~~~~l~~L~~~ea~~Lf~~~ 410 (1223)
......++.+++|+.++-..++.+-
T Consensus 269 LlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 269 LLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred HHhccceeEeccCCHHHHHHHHHHH
Confidence 2234478999999999998888873
No 101
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00016 Score=86.37 Aligned_cols=182 Identities=17% Similarity=0.136 Sum_probs=107.9
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc----cC-----------------c
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND----FE-----------------G 293 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~ 293 (1223)
.|...+++||.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+... +. .
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 35567889999888888888775332 23567899999999999999999865321 10 0
Q ss_pred ceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHH-----HhcCeEEEEecCCCCH--HHHHHHhcCCC
Q 000922 294 RCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKER-----LQQMKVFVVLDDVNKP--EQLDYLAGGLD 366 (1223)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~ 366 (1223)
...+. .....++..+ ..+.+. ..+++-++|+|+++.. .+.+.|...+.
T Consensus 88 v~el~----aa~~~gid~i---------------------R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE 142 (472)
T PRK14962 88 VIELD----AASNRGIDEI---------------------RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLE 142 (472)
T ss_pred cEEEe----CcccCCHHHH---------------------HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHH
Confidence 00110 0001111111 112111 2245679999999765 34566666555
Q ss_pred CCCCCCEEEEEeCC-hhhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC-chHHHHHH
Q 000922 367 RFGLGSRVVVTSRD-RQVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGN-PLALKVLG 443 (1223)
Q Consensus 367 ~~~~gsrIIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~lg 443 (1223)
...+...+|++|.+ ..+.... .....+++.+++.++....+.+.+...+..- ..+....|+++++|. +.|+..+.
T Consensus 143 ~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~GdlR~aln~Le 220 (472)
T PRK14962 143 EPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGGLRDALTMLE 220 (472)
T ss_pred hCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 43444555545444 3333322 2346899999999999888888775433211 124567788877654 56666655
Q ss_pred h
Q 000922 444 S 444 (1223)
Q Consensus 444 ~ 444 (1223)
.
T Consensus 221 ~ 221 (472)
T PRK14962 221 Q 221 (472)
T ss_pred H
Confidence 4
No 102
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.93 E-value=0.00023 Score=83.46 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=111.2
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc----cCc-----------------c
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND----FEG-----------------R 294 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~-----------------~ 294 (1223)
|...++++|.+..++.+...+..+. -.+.+.++|++|+||||+|+.+...+... +.. .
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 4556789999999999999885432 24577899999999999999999875422 110 0
Q ss_pred eeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCC
Q 000922 295 CFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGS 372 (1223)
Q Consensus 295 ~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs 372 (1223)
.++.. ....+.. -.+++...+.. .-..+++-++|+|+++.. ...+.+...+....+.+
T Consensus 89 ~~~~~----~~~~~~~-~~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 89 IEIDA----ASNNGVD-DIREILDNVKY---------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred EEeec----cccCCHH-HHHHHHHHHhc---------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 11100 0000100 01111111100 001234558889998764 44666666665545667
Q ss_pred EEEEEeCChh-hhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 000922 373 RVVVTSRDRQ-VFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKVL 442 (1223)
Q Consensus 373 rIIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 442 (1223)
.+|++|.+.. +.... .....+++.+++.++..+.+...+-..+...+ .+.+..+++.++|.|..+...
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALSL 218 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHHH
Confidence 7777776543 32221 23357899999999999888887654332211 356778889999988655443
No 103
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.93 E-value=1e-05 Score=67.58 Aligned_cols=58 Identities=34% Similarity=0.449 Sum_probs=39.5
Q ss_pred CccEEEccCCCcccccc-cccccCccceeeeccccccccCccccccCCcccEEeecCCc
Q 000922 728 NVIELDLKGTAIEEIPS-SIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCS 785 (1223)
Q Consensus 728 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~ 785 (1223)
+|++|++++|.|+.+|. .+..+++|++|++++|.....-|..+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46677777777777775 56777777777777655544444456777777777777664
No 104
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.92 E-value=8.2e-07 Score=98.18 Aligned_cols=65 Identities=17% Similarity=0.327 Sum_probs=39.6
Q ss_pred cCCCCCCEEEcCCCCCCC------CchhhcCCCCCcEEeCCCCCCc--ccchhhcCCCCCCEEeccCCCCCCC
Q 000922 888 SGLSSLTKLDLSDCDVME------IPQDIGRASSLEILDISGNDFD--SLPASIKQLSRLRELYLSNCSMLQS 952 (1223)
Q Consensus 888 ~~l~~L~~L~L~~~~l~~------lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~~~~l~~ 952 (1223)
.+++.|+.|.|++|.+.+ +...-..+..|+.|.|+++... ..-+.+..+++|+.+++-+|+....
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 356667777777665432 1222344566777777777654 2334556777888888888866543
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00013 Score=85.02 Aligned_cols=173 Identities=12% Similarity=0.052 Sum_probs=105.8
Q ss_pred CCCceehhhHHHHHHHhhhcCCC--------CeEEEEEEccCCCchHHHHHHHHHHHhhccC------------------
Q 000922 239 FEGLVGIYSRIEQIKSLLCVGLP--------DFQIIGIWGMGGIGKTTIAGAIFNQISNDFE------------------ 292 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------------------ 292 (1223)
.++++|-+.-++.|...+..+.. -.+.+.++|++|+||||+|+.++..+-....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 35688988888888888865431 2467889999999999999999886432211
Q ss_pred --cceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhc
Q 000922 293 --GRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAG 363 (1223)
Q Consensus 293 --~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~ 363 (1223)
...++. ......++.+ ...+.+.. .+++-++|+|+++.. .....|+.
T Consensus 84 hpD~~~i~---~~~~~i~i~~---------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk 139 (394)
T PRK07940 84 HPDVRVVA---PEGLSIGVDE---------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLK 139 (394)
T ss_pred CCCEEEec---cccccCCHHH---------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHH
Confidence 011110 0000011111 11222222 234457788999865 34556666
Q ss_pred CCCCCCCCCEEEEEeCCh-hhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 000922 364 GLDRFGLGSRVVVTSRDR-QVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKV 441 (1223)
Q Consensus 364 ~~~~~~~gsrIIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 441 (1223)
.+....++..+|++|.+. .+... ......+.++.++.++..+.+.... .. . .+.+..++..++|.|.....
T Consensus 140 ~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~-~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 140 AVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GV-D---PETARRAARASQGHIGRARR 212 (394)
T ss_pred HhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CC-C---HHHHHHHHHHcCCCHHHHHH
Confidence 655556677777777664 33332 2234689999999999998887432 11 1 24567889999999965433
Q ss_pred H
Q 000922 442 L 442 (1223)
Q Consensus 442 l 442 (1223)
+
T Consensus 213 l 213 (394)
T PRK07940 213 L 213 (394)
T ss_pred H
Confidence 3
No 106
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00027 Score=86.43 Aligned_cols=192 Identities=14% Similarity=0.126 Sum_probs=109.3
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc--c--CcceeeeechhhhccCCHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND--F--EGRCFMANVREESERGGLVY 311 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F--~~~~~~~~~~~~~~~~~l~~ 311 (1223)
|...+++||-+.-++.|..++..+. -...+.++|..|+||||+|+.+++.+--. . .+... ...+.-.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pCg~C~ 82 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPCGVCQ 82 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCCCccH
Confidence 4567889998888888988885442 34677899999999999999998754210 0 00000 0000000
Q ss_pred HHHHHHHHHhhhccCcCC--CCchHHHHHHH--------hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC
Q 000922 312 LRERLYSEILEETLKIRT--PSVPKCIKERL--------QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSR 379 (1223)
Q Consensus 312 l~~~ll~~l~~~~~~~~~--~~~~~~l~~~L--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR 379 (1223)
-.+.+...-..+...... ....+.+++.+ .++.-++|||+|+.. ...+.|+..+........+|++|.
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 001110000000000000 00022222222 234558899999864 456777776665555667766664
Q ss_pred C-hhhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 000922 380 D-RQVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 380 ~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 438 (1223)
+ ..+... ......++++.++.++..+.+.+.+-..+...+ .+....|++.++|.+--
T Consensus 163 d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~GslR~ 221 (618)
T PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSMRD 221 (618)
T ss_pred CchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 4 333322 223468999999999999999887654432221 24567888889887743
No 107
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00021 Score=84.80 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=109.7
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc---------------------cCcc
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND---------------------FEGR 294 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 294 (1223)
|...+++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+--. +..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 4567889999999998888875442 24578899999999999999998754211 1111
Q ss_pred eeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCC
Q 000922 295 CFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDR 367 (1223)
Q Consensus 295 ~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~ 367 (1223)
+.+.. +...+... ...+.+.. .+++-++|+|+++.. ...+.|...+..
T Consensus 88 ~eida----as~~~vdd---------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe 142 (491)
T PRK14964 88 IEIDA----ASNTSVDD---------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE 142 (491)
T ss_pred EEEec----ccCCCHHH---------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC
Confidence 11110 00111111 11111111 245568999999754 446677766666
Q ss_pred CCCCCEEEEEeCC-hhhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 368 FGLGSRVVVTSRD-RQVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 368 ~~~gsrIIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
..+...+|++|.+ ..+... ......++++.++.++..+.+.+.+...+..- ..+....|++.++|.+-
T Consensus 143 Pp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 143 PAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMR 212 (491)
T ss_pred CCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 5677777766644 344332 22346899999999999999988775543221 22456788888988774
No 108
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.00019 Score=85.57 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=98.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccC--cceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFE--GRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL 340 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 340 (1223)
..-+.|+|..|.|||+|++++++.+..... .++|+. ...+...+...+.... .....+++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh------hHHHHHHHHh
Confidence 345889999999999999999997765332 223432 1234444443332210 1133444444
Q ss_pred hcCeEEEEecCCCCHH----HHHHHhcCCCC-CCCCCEEEEEeCCh---------hhhhhcCCCceEEecCCCHHHHHHH
Q 000922 341 QQMKVFVVLDDVNKPE----QLDYLAGGLDR-FGLGSRVVVTSRDR---------QVFDKCRVDKIYEVEGLNQNEALEH 406 (1223)
Q Consensus 341 ~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 406 (1223)
+ +.-+|||||+.... ..+.+...+.. ...|..||+|+... .+...+...-++++++++.++..++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 4 34578889996432 12333222211 13455788887642 1222233445788999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHH
Q 000922 407 FSNYAFRQNICPKDFLVLSERIVFYANGNPLALKVLG 443 (1223)
Q Consensus 407 f~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 443 (1223)
+.+++-..+....-.++...-|++.++|.|-.+..+.
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9998754321112334677889999999997666544
No 109
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.89 E-value=0.00016 Score=89.49 Aligned_cols=205 Identities=18% Similarity=0.133 Sum_probs=109.3
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhh--cc---CcceeeeechhhhccCCHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN--DF---EGRCFMANVREESERGGLV 310 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F---~~~~~~~~~~~~~~~~~l~ 310 (1223)
|...++++|.+..++.+.+.+.. .....+.|+|++|+||||+|+.+++..+. .+ ...-|+..- ......+..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~-~~~l~~d~~ 226 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD-GTTLRWDPR 226 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe-chhccCCHH
Confidence 55667899999999988777643 33457999999999999999999875432 11 112222110 101011111
Q ss_pred HHHHHH---------------HHHHhh---------hc-------cCcCCCC--chHHHHHHHhcCeEEEEecCCCCH--
Q 000922 311 YLRERL---------------YSEILE---------ET-------LKIRTPS--VPKCIKERLQQMKVFVVLDDVNKP-- 355 (1223)
Q Consensus 311 ~l~~~l---------------l~~l~~---------~~-------~~~~~~~--~~~~l~~~L~~kr~LlVLDdv~~~-- 355 (1223)
.+...+ +..... .. +.....+ .+..+.+.+++++++++-|+.|..
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 111111 110000 00 0011111 256667777788888887666543
Q ss_pred HHHHHHhcCCCCCCCCCEEEE--EeCChhhhh-hc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHH
Q 000922 356 EQLDYLAGGLDRFGLGSRVVV--TSRDRQVFD-KC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFY 431 (1223)
Q Consensus 356 ~~~~~l~~~~~~~~~gsrIIi--TTR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~ 431 (1223)
..|+.+...+....+...|+| ||++..... .. .....+.+.+++.+|.++++.+.+-.....- -.++...|.++
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l--s~eal~~L~~y 384 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL--AAGVEELIARY 384 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHC
Confidence 235555544444444444555 566543211 11 1224678899999999999998764322111 12344555555
Q ss_pred hCCCchHHHHHHhh
Q 000922 432 ANGNPLALKVLGSF 445 (1223)
Q Consensus 432 ~~GlPLal~~lg~~ 445 (1223)
+..-+-|+..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 54335555555433
No 110
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.89 E-value=6.1e-07 Score=104.85 Aligned_cols=126 Identities=22% Similarity=0.220 Sum_probs=97.3
Q ss_pred CccEEEccCCCcccccccccccCccceeeeccccccccCccccccCCcccEEeecCCcCcccchh-hhcccccceeeecC
Q 000922 728 NVIELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPE-ILEKMECLEYIDLE 806 (1223)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~-~l~~l~~L~~L~L~ 806 (1223)
.|...+.++|.++.+..++.-++.|+.|||++|+..+. . .+..|+.|++|+|+.|... .+|. ....+. |..|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence 57778888899999999999999999999999765443 3 5778999999999997644 4444 333444 9999999
Q ss_pred CCCccccccccccCCCCcEEEccCCCCCCCC-ccccCCCCCCceeecCCcccc
Q 000922 807 STAVKELPSSVEQLKGLRELILEDCSELSKL-PENLGNLKSLKRLFAKRSAIS 858 (1223)
Q Consensus 807 ~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~n~i~ 858 (1223)
+|.++++- ++.+|.+|+.|+++.|-..+.- -..+..|..|+.|+|.+|.+-
T Consensus 241 nN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99999875 4889999999999987554321 123566778889999998764
No 111
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00026 Score=85.52 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=107.6
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc---------------------cCc
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND---------------------FEG 293 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~ 293 (1223)
.|...+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+-.. |..
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 35567889999999999999985432 24567899999999999999999865211 111
Q ss_pred ceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCC
Q 000922 294 RCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLG 371 (1223)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 371 (1223)
...+.. ....++..+ ++++..+.. .-..++.-++|+|+|+.. ...+.|+..+....+.
T Consensus 90 ~~eida----as~~~v~~i-R~l~~~~~~---------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 90 LFEVDA----ASRTKVEDT-RELLDNIPY---------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEEcc----cccCCHHHH-HHHHHHHhh---------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 111100 001111111 111111100 001245567889999864 4566676666555567
Q ss_pred CEEEEEeCCh-hhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 372 SRVVVTSRDR-QVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 372 srIIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
.++|++|.+. .+... ......++++.++.++....+.+.+-..+...+ .+....|++.++|.+.
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR 215 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVR 215 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHH
Confidence 7777766553 33222 122357889999999888777666543332211 2345678888888874
No 112
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.0002 Score=86.24 Aligned_cols=197 Identities=14% Similarity=0.091 Sum_probs=108.8
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRE 314 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~ 314 (1223)
.|...++++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+...- |... ...+--...+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~~-----~~Cg~C~sCr 80 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKDG-----DCCNSCSVCE 80 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCCC-----CCCcccHHHH
Confidence 35567889999999999998885432 246788999999999999999998753210 1000 0000000011
Q ss_pred HHHHHHhhhccCcC-----CCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-h
Q 000922 315 RLYSEILEETLKIR-----TPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD-R 381 (1223)
Q Consensus 315 ~ll~~l~~~~~~~~-----~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~ 381 (1223)
.+............ ..+..+.+.+.. .+++=++|+|+++.. .....|...+....+...+|++|.. .
T Consensus 81 ~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 11000000000000 000011121111 123335999999763 4466666655444455666655543 3
Q ss_pred hhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch-HHHHHH
Q 000922 382 QVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL-ALKVLG 443 (1223)
Q Consensus 382 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~lg 443 (1223)
.+... ......+++.+++.++....+...+-..+..- ..+.+..+++.++|.+- |+..+-
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33322 22346899999999999988887764433111 12456788888998664 444443
No 113
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00024 Score=81.61 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=113.4
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc----cCcceeeeechhhhccCCHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND----FEGRCFMANVREESERGGLV 310 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~~~~~~l~ 310 (1223)
.|.....++|-+...+.+...+..+. -...+.|+|+.|+||||+|+.++..+-.. +...... ...+-.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCC
Confidence 45677889999999999999885442 34578899999999999999999876431 1111000 000000
Q ss_pred HHHHHHHHH-------Hhh---hccCc-C---CCCchHHHHHHHh-----cCeEEEEecCCCCH--HHHHHHhcCCCCCC
Q 000922 311 YLRERLYSE-------ILE---ETLKI-R---TPSVPKCIKERLQ-----QMKVFVVLDDVNKP--EQLDYLAGGLDRFG 369 (1223)
Q Consensus 311 ~l~~~ll~~-------l~~---~~~~~-~---~~~~~~~l~~~L~-----~kr~LlVLDdv~~~--~~~~~l~~~~~~~~ 369 (1223)
...+.+... +.. ...+. . ..+....+.+.+. +++-++|+|+++.. ...+.|+..+....
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 111111111 000 00000 0 0111233333332 45678999999864 34566666555444
Q ss_pred CCCEEEEEe-CChhhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 000922 370 LGSRVVVTS-RDRQVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKVL 442 (1223)
Q Consensus 370 ~gsrIIiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 442 (1223)
....+|++| +...+.... .....+++.+++.++..+++........ -..+....+++.++|.|.....+
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 455555554 433343322 2336899999999999999987432211 11345678899999999754443
No 114
>PF14516 AAA_35: AAA-like domain
Probab=97.84 E-value=0.0039 Score=71.68 Aligned_cols=205 Identities=13% Similarity=0.160 Sum_probs=117.8
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhc--cCCHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESE--RGGLVYL 312 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~--~~~l~~l 312 (1223)
.+.+.+..|.|...-+++.+.+... -..+.|.|+-.+|||+|...+.+.....=-.++++ +...... ......+
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHH
Confidence 3456677888885555666555332 25899999999999999999998776542223344 3333222 2345555
Q ss_pred HHHHHHHHhhhcc---------C--cCCCCc-hHHHHHHH-h--cCeEEEEecCCCCHHH----HHHHhcCCC-C-----
Q 000922 313 RERLYSEILEETL---------K--IRTPSV-PKCIKERL-Q--QMKVFVVLDDVNKPEQ----LDYLAGGLD-R----- 367 (1223)
Q Consensus 313 ~~~ll~~l~~~~~---------~--~~~~~~-~~~l~~~L-~--~kr~LlVLDdv~~~~~----~~~l~~~~~-~----- 367 (1223)
.+.+...+...-. . ...... ...+.+.+ . +++++|+||+|+..-. .+.+.+.++ |
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 5555444432211 0 111111 33344432 2 6899999999976422 112221110 1
Q ss_pred -CCC-CC--EEEEEeCChhhh-hh----cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 000922 368 -FGL-GS--RVVVTSRDRQVF-DK----CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 368 -~~~-gs--rIIiTTR~~~v~-~~----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 438 (1223)
... .+ -|++-+...... .. ..+...+++++++.+|...|..++-.. . .. ...++|...+||+|.-
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~---~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQ---EQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CH---HHHHHHHHHHCCCHHH
Confidence 001 11 122222111111 11 234568899999999999999876422 1 11 2278999999999999
Q ss_pred HHHHHhhhccC
Q 000922 439 LKVLGSFLQRK 449 (1223)
Q Consensus 439 l~~lg~~L~~~ 449 (1223)
+..++..+...
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 99999988654
No 115
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.83 E-value=0.00039 Score=82.97 Aligned_cols=157 Identities=22% Similarity=0.293 Sum_probs=89.7
Q ss_pred CCCCceehhhHHHHHHHhhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccC-----cceeeeech
Q 000922 238 DFEGLVGIYSRIEQIKSLLCV-----------GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFE-----GRCFMANVR 301 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-----~~~~~~~~~ 301 (1223)
...++.|.+..++++...+.. +-...+-|.++|++|.|||++|+++++.+...+. ...|+ +++
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl-~v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL-NIK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE-ecc
Confidence 446678898888888776532 1123456899999999999999999998765422 23333 221
Q ss_pred hhh--ccC--CHHHHHHHHHHHHhhhccCcCCCCchHHHHHH-HhcCeEEEEecCCCCHH---------H-----HHHHh
Q 000922 302 EES--ERG--GLVYLRERLYSEILEETLKIRTPSVPKCIKER-LQQMKVFVVLDDVNKPE---------Q-----LDYLA 362 (1223)
Q Consensus 302 ~~~--~~~--~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~---------~-----~~~l~ 362 (1223)
... ..+ ......+.+ ....++. -.+++++|+||+++..- + +..++
T Consensus 259 ~~eLl~kyvGete~~ir~i----------------F~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL 322 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLI----------------FQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL 322 (512)
T ss_pred chhhcccccchHHHHHHHH----------------HHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence 100 000 000001111 1111111 13478999999997531 0 22333
Q ss_pred cCCCCCC--CCCEEEEEeCChhhhhh-----cCCCceEEecCCCHHHHHHHHHHhh
Q 000922 363 GGLDRFG--LGSRVVVTSRDRQVFDK-----CRVDKIYEVEGLNQNEALEHFSNYA 411 (1223)
Q Consensus 363 ~~~~~~~--~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 411 (1223)
..+.... .+..||.||.....+.. ...+..++++..+.++..++|..+.
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3333222 34445666655433321 1345679999999999999999886
No 116
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.82 E-value=1.8e-05 Score=66.18 Aligned_cols=57 Identities=30% Similarity=0.392 Sum_probs=29.6
Q ss_pred cccEEeecCCcCcccchhhhcccccceeeecCCCCcccccc-ccccCCCCcEEEccCC
Q 000922 775 SLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPS-SVEQLKGLRELILEDC 831 (1223)
Q Consensus 775 ~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~~ 831 (1223)
+|++|++++|......+..+..+++|++|++++|.++.++. .+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 44555555554443333455555555555555555555543 3555555555555555
No 117
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.0004 Score=81.98 Aligned_cols=197 Identities=12% Similarity=0.077 Sum_probs=109.5
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc--cCcceeeeechhhhccCCHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND--FEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
.|...++++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+... +...-|.... ....+.-.-
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~ 86 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECES 86 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHH
Confidence 35566789999988888888885432 23558899999999999999999876321 1000000000 000000000
Q ss_pred HHHHHHHHhhhc---cC--cCCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC
Q 000922 313 RERLYSEILEET---LK--IRTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD 380 (1223)
Q Consensus 313 ~~~ll~~l~~~~---~~--~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~ 380 (1223)
.+++........ .+ ....+.+..+.+.+ .+++-++|+|+++.. ..++.+...+....+.+.+|++|.+
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 011100000000 00 00001122222333 245568899999764 4566777666655567777666543
Q ss_pred -hhhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 381 -RQVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 381 -~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
..+.... .....+++++++.++..+.+...+-..+. .-..+.+..+++.++|.+-
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMR 223 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 4443321 12357899999999998888776633221 1223567889999999874
No 118
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=7.8e-07 Score=103.98 Aligned_cols=129 Identities=23% Similarity=0.166 Sum_probs=85.7
Q ss_pred cceeeecCCCCccccccccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCccccccccccEEEccCC
Q 000922 799 CLEYIDLESTAVKELPSSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGC 878 (1223)
Q Consensus 799 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~ 878 (1223)
.|...+.+.|.+..+..++.-++.|+.|+|+.|+....- .+..++.|+.|+++.|.+..+|.--..-..|..|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 466667777888777777888888888888887655432 677778888888888888777653222223777777777
Q ss_pred CCCCCCccccCCCCCCEEEcCCCCCCCCc--hhhcCCCCCcEEeCCCCCCcccc
Q 000922 879 RGLVLPPILSGLSSLTKLDLSDCDVMEIP--QDIGRASSLEILDISGNDFDSLP 930 (1223)
Q Consensus 879 ~~~~~p~~~~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp 930 (1223)
...++-. +.++.+|+.||+++|-+.+.. ..++.|..|+.|.|.||.+-.-|
T Consensus 243 ~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 243 ALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred HHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 6554433 556777777777777665421 22455667777777777665433
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00027 Score=85.88 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=108.9
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccC---------------------cc
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFE---------------------GR 294 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~ 294 (1223)
|...+++||-+.-++.+..++..+. -.+.+.++|+.|+||||+|+.++..+-.... ..
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 4566789999999999998885432 2356789999999999999999986532110 00
Q ss_pred eeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCHH--HHHHHhcCCCCCCCCC
Q 000922 295 CFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKPE--QLDYLAGGLDRFGLGS 372 (1223)
Q Consensus 295 ~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs 372 (1223)
+.+.. ....+...+ ++++..... .-..+++-++|+|+++... ..+.|+..+.......
T Consensus 91 ~ei~~----~~~~~vd~i-r~l~~~~~~---------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 91 IEVDA----ASNTQVDAM-RELLDNAQY---------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred eEeec----cccCCHHHH-HHHHHHHhh---------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 11100 000011111 111111100 0012456689999998653 4666666665555566
Q ss_pred EEEEEeCCh-hhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 000922 373 RVVVTSRDR-QVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL-ALKVL 442 (1223)
Q Consensus 373 rIIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~l 442 (1223)
.+|++|.+. .+... ......++++.++.++..+.+.+.+-..+.. ...+....|++.++|.+- |+..+
T Consensus 151 ~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 777666553 33221 1123578999999999998888766433321 122455778888999774 44433
No 120
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00048 Score=80.92 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=106.8
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc--------cCcceeeeechhhhcc
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND--------FEGRCFMANVREESER 306 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~~~~~~~~~~~~~~~ 306 (1223)
.|...++++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+.+.+.+... |...++- ... ...
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~-~~~ 87 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDA-ASN 87 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecc-ccC
Confidence 3556678999999999999988543 234688899999999999999998876431 2211111 000 011
Q ss_pred CCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-hhh
Q 000922 307 GGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD-RQV 383 (1223)
Q Consensus 307 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~~v 383 (1223)
.+...+ ++++.++... -..+++-++|+|+++.. ..++.+...+......+.+|++|.. ..+
T Consensus 88 ~~~~~i-~~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 88 NSVDDI-RNLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CCHHHH-HHHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 111111 1111111000 01234557999998754 3356665444333445566655533 333
Q ss_pred hhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 384 FDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 384 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
... ......++.++++.++....+...+...+..- ..+....+++.++|.+-
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALR 204 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHH
Confidence 322 22335789999999999988888775443211 12566778888888765
No 121
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.78 E-value=8.2e-05 Score=87.38 Aligned_cols=156 Identities=19% Similarity=0.293 Sum_probs=91.2
Q ss_pred CCCCCCceehhhHHHHHHHhhhcC-----------CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhh
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVG-----------LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREES 304 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 304 (1223)
.....++.|.+..++++.+.+... -...+-|.++|++|.|||++|+++++.....|- .+... +
T Consensus 179 ~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~s-e-- 252 (438)
T PTZ00361 179 LESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVGS-E-- 252 (438)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEecc-h--
Confidence 344567889999999888766421 123456889999999999999999998765542 11100 0
Q ss_pred ccCCHHHHHHHHHHHHhhhccCcCCCCc-hHHHHHHHhcCeEEEEecCCCCHH----------------HHHHHhcCCCC
Q 000922 305 ERGGLVYLRERLYSEILEETLKIRTPSV-PKCIKERLQQMKVFVVLDDVNKPE----------------QLDYLAGGLDR 367 (1223)
Q Consensus 305 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~ 367 (1223)
+.... .+.. ... ...+.......+.+|+||+++... .+..++..+..
T Consensus 253 -------L~~k~----~Ge~-----~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 253 -------LIQKY----LGDG-----PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred -------hhhhh----cchH-----HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 11000 0000 000 111222223567888999875321 11222222221
Q ss_pred C--CCCCEEEEEeCChhhhhh-----cCCCceEEecCCCHHHHHHHHHHhhhc
Q 000922 368 F--GLGSRVVVTSRDRQVFDK-----CRVDKIYEVEGLNQNEALEHFSNYAFR 413 (1223)
Q Consensus 368 ~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 413 (1223)
+ ..+-+||+||.....+.. ...+..++++..+.++..++|..++.+
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 1 235678888876544332 124568999999999999999987643
No 122
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=2.4e-05 Score=82.84 Aligned_cols=183 Identities=18% Similarity=0.231 Sum_probs=110.8
Q ss_pred CCcccEEeecCCcCc--ccchhhhcccccceeeecCCCCcccccccc-ccCCCCcEEEccCCCCC-CCCccccCCCCCCc
Q 000922 773 LKSLHLLCLYNCSNF--EIFPEILEKMECLEYIDLESTAVKELPSSV-EQLKGLRELILEDCSEL-SKLPENLGNLKSLK 848 (1223)
Q Consensus 773 L~~L~~L~L~~c~~~--~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~ 848 (1223)
.+.++.|+|.+|.+. ..+...+.+|+.|+.|+|+.|.+..--.++ ..+.+|+.|-|.|.... ......+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 456677777776543 234455667777777777777665322222 34556777777664321 22333455666666
Q ss_pred eeecCCcccccCC---ccccc-cccccEEEccCCCCCCCC---ccccCCCCCCEEEcCCCCCCCCc--hhhcCCCCCcEE
Q 000922 849 RLFAKRSAISKLP---SSIAY-LDEVIELSFHGCRGLVLP---PILSGLSSLTKLDLSDCDVMEIP--QDIGRASSLEIL 919 (1223)
Q Consensus 849 ~L~l~~n~i~~lp---~~~~~-l~~L~~L~l~~~~~~~~p---~~~~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L 919 (1223)
+|.++.|++.++- ..... -+.+++|.+.+|...... ..-.-++++..+-+..|.+.+.. .....++.+-.|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 6666666444321 11111 123444444444321110 11224678888888888777533 335567888899
Q ss_pred eCCCCCCcccch--hhcCCCCCCEEeccCCCCCCCCCC
Q 000922 920 DISGNDFDSLPA--SIKQLSRLRELYLSNCSMLQSLPE 955 (1223)
Q Consensus 920 ~Ls~n~l~~lp~--~l~~l~~L~~L~L~~~~~l~~lp~ 955 (1223)
+|+.|++.+..+ .+..++.|..|.++++|.+..+..
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 999999986653 578899999999999998877764
No 123
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.0006 Score=81.27 Aligned_cols=158 Identities=14% Similarity=0.141 Sum_probs=92.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCc--ceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEG--RCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL 340 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 340 (1223)
..-+.|+|.+|+|||+||+++++.+....+. ++|+. . ..+..++...+.. .....+++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~---------~~f~~~~~~~~~~--------~~~~~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFLNDLVDSMKE--------GKLNEFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHhc--------ccHHHHHHHH
Confidence 3458999999999999999999987765532 34442 1 1233333333211 0133444555
Q ss_pred hcCeEEEEecCCCCH---HHH-HHHhcCCCC-CCCCCEEEEEeC-Chhhh--------hhcCCCceEEecCCCHHHHHHH
Q 000922 341 QQMKVFVVLDDVNKP---EQL-DYLAGGLDR-FGLGSRVVVTSR-DRQVF--------DKCRVDKIYEVEGLNQNEALEH 406 (1223)
Q Consensus 341 ~~kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gsrIIiTTR-~~~v~--------~~~~~~~~~~l~~L~~~ea~~L 406 (1223)
+.+.-+||+||++.. ... +.+...+.. ...|..||+||. +..-+ ..+...-++++++.+.+.-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 545668999999743 111 122211111 123557888885 32211 1223345889999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 000922 407 FSNYAFRQNICPKDFLVLSERIVFYANGNPLALK 440 (1223)
Q Consensus 407 f~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 440 (1223)
+.+.+-..... -.+++...|++.+.|.--.|.
T Consensus 272 L~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 272 ARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHhcCCC--CCHHHHHHHHhccccCHHHHH
Confidence 99887533221 123566777777777654433
No 124
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.76 E-value=0.00047 Score=74.17 Aligned_cols=193 Identities=16% Similarity=0.217 Sum_probs=118.5
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHh--hccCcceeeeechhhhccCCHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQIS--NDFEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
.|...++++|-+..+..|...+.. ........+|++|.|||+-|++++.++- +-|++++--.|. +...|..-.
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderGisvv 105 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERGISVV 105 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---cccccccch
Confidence 355678899999999999888854 5678889999999999999999998653 345555432222 222222211
Q ss_pred HHHH--HHHHhhhccCcCCCCchHHHHHHHhcCe-EEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhh-hhh
Q 000922 313 RERL--YSEILEETLKIRTPSVPKCIKERLQQMK-VFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDRQV-FDK 386 (1223)
Q Consensus 313 ~~~l--l~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~v-~~~ 386 (1223)
..++ ++.+........ .. ..++ -.||||+++.. +.|.+|......+..-+|.|+.+..-.. ..-
T Consensus 106 r~Kik~fakl~~~~~~~~---------~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKRSD---------GY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhhhcCHHHHhhcccccc---------CC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 1111 111111000000 00 0122 46889999875 4588888877777777776655554322 211
Q ss_pred -cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC-chHHHHHHh
Q 000922 387 -CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGN-PLALKVLGS 444 (1223)
Q Consensus 387 -~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~lg~ 444 (1223)
......|.-++|.+++...-+...+-.++..-+ .+..+.|++.++|- --|+.++-+
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 112356889999999999988888866554322 25668899998884 345555444
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00095 Score=81.96 Aligned_cols=197 Identities=12% Similarity=0.060 Sum_probs=108.0
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc--cCcceeeeechhhhccCCHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND--FEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
.|...+++||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. .+.-.|..... ...+.-..
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~---~~Cg~C~s 86 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT---EPCGECES 86 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC---CCCccCHH
Confidence 3456688999999889898887533 224568899999999999999999865321 11001110000 00000000
Q ss_pred HHHHHHHHhhhc---cC--cCCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC-
Q 000922 313 RERLYSEILEET---LK--IRTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSR- 379 (1223)
Q Consensus 313 ~~~ll~~l~~~~---~~--~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR- 379 (1223)
.+++........ .+ ....+.+..+.+.+ .+++-++|+|+++.. ...+.|...+....+.+.+|++|.
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 011100000000 00 00001122222222 234557899999765 346667666655455666665554
Q ss_pred Chhhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 380 DRQVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 380 ~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
...+... ......+++..++.++....+.+.+-..+.. -..+.+..+++.++|..-
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHH
Confidence 3444432 2345789999999999888887765432211 122566788899999654
No 126
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00096 Score=81.34 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=112.1
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRER 315 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ 315 (1223)
|...+++||-+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+-...... .-. .+.-.-.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~p--------Cg~C~~C~~ 78 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-ATP--------CGVCESCVA 78 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-CCc--------ccccHHHHH
Confidence 4566789999999999999885432 245678999999999999999998653211000 000 000000000
Q ss_pred HHHH------Hhh-hccCcCCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-
Q 000922 316 LYSE------ILE-ETLKIRTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD- 380 (1223)
Q Consensus 316 ll~~------l~~-~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~- 380 (1223)
+... +.. +.......+....+++.+ .+++-++|+|+++.. ...+.|+..+........+|++|.+
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 0000 000 000000001122222222 245568899999753 4567777766665666676665544
Q ss_pred hhhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch-HHHHHHh
Q 000922 381 RQVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL-ALKVLGS 444 (1223)
Q Consensus 381 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~lg~ 444 (1223)
..+... ......|+...++.++..+.+.+.+-..+..- ..+....|++.++|.+- |+..+-.
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444432 22346899999999999888887765433211 12455778888898774 4444433
No 127
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.75 E-value=2.2e-06 Score=94.91 Aligned_cols=272 Identities=18% Similarity=0.279 Sum_probs=138.8
Q ss_pred CCceEecCCCCCc---cccccccccccceEEecCCCCCCcccCccc---ccccceeecccCCcCCccCCCCCCCccEEEc
Q 000922 661 NLIELNLPHSKVE---QIWEGKKHFNNLVMLCLSHCESLRCFPQNI---HFRTLIEIDFSYCINLTEFPEISGNVIELDL 734 (1223)
Q Consensus 661 ~L~~L~L~~~~i~---~l~~~~~~l~~L~~L~Ls~~~~l~~~p~~~---~~~~L~~L~Ls~c~~l~~~p~~~~~L~~L~L 734 (1223)
.|+.|.+.++.-. .+-.....+++++.|++.+|.+++...-.. .+++|++|+|..|..++..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~------------ 206 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV------------ 206 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH------------
Confidence 4666666665432 233334566777777777776554432211 5566666666666544421
Q ss_pred cCCCcccccccccccCccceeeecccccccc--CccccccCCcccEEeecCCcCccc--chhhhcccccceeeecCCCC-
Q 000922 735 KGTAIEEIPSSIECLTKLEELDLAYCRRLKS--LPSSICKLKSLHLLCLYNCSNFEI--FPEILEKMECLEYIDLESTA- 809 (1223)
Q Consensus 735 ~~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~L~~c~~~~~--~p~~l~~l~~L~~L~L~~n~- 809 (1223)
.+-.-...+++|++|+++.|..+.. +-.-..++..|+.+.+.||...+. +-..-+.+..+..+++..+.
T Consensus 207 ------~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 207 ------SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred ------HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 0001123466777777777765543 111123455566666666544322 00011122223333332221
Q ss_pred ccccc--cccccCCCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCccccccccccEEEccCCCCCC---CC
Q 000922 810 VKELP--SSVEQLKGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLV---LP 884 (1223)
Q Consensus 810 l~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~---~p 884 (1223)
++... ..-..+..|+.|..++|...+..+- -.-..+..+|+.|.+.+|+... +.
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l---------------------~aLg~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVL---------------------WALGQHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHH---------------------HHHhcCCCceEEEeccccchhhhhhhh
Confidence 11110 0012234455555555444322111 0111233556666666665322 22
Q ss_pred ccccCCCCCCEEEcCCCCCCC---CchhhcCCCCCcEEeCCCCCCc------ccchhhcCCCCCCEEeccCCCCCCCCC-
Q 000922 885 PILSGLSSLTKLDLSDCDVME---IPQDIGRASSLEILDISGNDFD------SLPASIKQLSRLRELYLSNCSMLQSLP- 954 (1223)
Q Consensus 885 ~~~~~l~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~Ls~n~l~------~lp~~l~~l~~L~~L~L~~~~~l~~lp- 954 (1223)
..-.+++.|+.|++..|.+.. +-.--.+.+.|+.|.|+++... .+...-..+..|..|.|++|+.+..--
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 234577889999999987653 3333457899999999987543 223344567789999999998764211
Q ss_pred ---CccCCCcEEeccCCcCc
Q 000922 955 ---ELPLRVKLLDASNCKQL 971 (1223)
Q Consensus 955 ---~l~~~L~~L~~~~c~~L 971 (1223)
..-++|+.+++.+|...
T Consensus 420 e~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 420 EHLSICRNLERIELIDCQDV 439 (483)
T ss_pred HHHhhCcccceeeeechhhh
Confidence 11235555555555543
No 128
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.74 E-value=0.0003 Score=80.90 Aligned_cols=151 Identities=16% Similarity=0.238 Sum_probs=88.7
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRE 314 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~ 314 (1223)
.|...++++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....| .++. . .. .....+..
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~---~~-~~~~~i~~ 86 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-G---SD-CRIDFVRN 86 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-c---Cc-ccHHHHHH
Confidence 3556688999999999999888643 2346777799999999999999998763322 2221 1 11 11122211
Q ss_pred HHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH---HHHHHHhcCCCCCCCCCEEEEEeCChhhh-hh-cCC
Q 000922 315 RLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP---EQLDYLAGGLDRFGLGSRVVVTSRDRQVF-DK-CRV 389 (1223)
Q Consensus 315 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIIiTTR~~~v~-~~-~~~ 389 (1223)
.+ ....... .+.+.+-++|+||++.. +..+.+...+.....+.++|+||...... .. ...
T Consensus 87 ~l-~~~~~~~--------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 87 RL-TRFASTV--------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HH-HHHHHhh--------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 11 1111000 01134557889999765 22333333333345678899988754321 11 122
Q ss_pred CceEEecCCCHHHHHHHHHH
Q 000922 390 DKIYEVEGLNQNEALEHFSN 409 (1223)
Q Consensus 390 ~~~~~l~~L~~~ea~~Lf~~ 409 (1223)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 34677888888888777654
No 129
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.74 E-value=3.2e-05 Score=87.41 Aligned_cols=93 Identities=17% Similarity=0.125 Sum_probs=60.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhh-ccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCch------HH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISN-DFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVP------KC 335 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~------~~ 335 (1223)
-+.++|+|++|+||||||+++|+.+.. +|+.++|+..+++.. ..+.++++++...+.....+....... -.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~--~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP--EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch--hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999997654 799999998765532 356677777764322221111110000 01
Q ss_pred HHHH--HhcCeEEEEecCCCCHHH
Q 000922 336 IKER--LQQMKVFVVLDDVNKPEQ 357 (1223)
Q Consensus 336 l~~~--L~~kr~LlVLDdv~~~~~ 357 (1223)
..++ -.+++++|++|++.....
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHHHH
Confidence 1112 257999999999976543
No 130
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00045 Score=83.85 Aligned_cols=199 Identities=15% Similarity=0.117 Sum_probs=112.6
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRER 315 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ 315 (1223)
|...+++||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-...... ....+.-...+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pCg~C~sC~~ 81 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPCNTCEQCRK 81 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCCcccHHHHH
Confidence 455678899888888888887543 2246788999999999999999998653211000 000000000011
Q ss_pred HHHHHhhhccCcC-----CCCchHHHHHH-----HhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-hh
Q 000922 316 LYSEILEETLKIR-----TPSVPKCIKER-----LQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD-RQ 382 (1223)
Q Consensus 316 ll~~l~~~~~~~~-----~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~~ 382 (1223)
+..........+. ..+..+.+++. ..+++-++|+|+++.. +..+.|...+....+...+|++|.+ ..
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 1000000000000 00001122222 1355678999999764 4466666665544455666666655 34
Q ss_pred hhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc-hHHHHHHhhh
Q 000922 383 VFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNP-LALKVLGSFL 446 (1223)
Q Consensus 383 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~lg~~L 446 (1223)
+... ......++++.++.++..+.+...+...+.. -..+.+..|++.++|.+ .|+..+...+
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4322 1223578999999999998888876543321 12256678888898865 5777665443
No 131
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00077 Score=82.65 Aligned_cols=195 Identities=15% Similarity=0.119 Sum_probs=112.1
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccC----cceeeeechhhhccCCHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFE----GRCFMANVREESERGGLV 310 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~----~~~~~~~~~~~~~~~~l~ 310 (1223)
.|...+++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.... ...+-. .+.-
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~--------cg~c 89 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL--------CGVG 89 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc--------Cccc
Confidence 35567889999999999999886442 2457889999999999999999986532211 000000 0000
Q ss_pred HHHHHHHHHHhhhccCc-----CCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEe
Q 000922 311 YLRERLYSEILEETLKI-----RTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTS 378 (1223)
Q Consensus 311 ~l~~~ll~~l~~~~~~~-----~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTT 378 (1223)
.-.+.+......+.... ...+.+..+.+.+ .+++-++|+|+++.. ...+.|...+....+.+.+|++|
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 00011110000000000 0001122222222 234557899999764 34666666665555677776655
Q ss_pred C-Chhhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 000922 379 R-DRQVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALK 440 (1223)
Q Consensus 379 R-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 440 (1223)
. ...+.... .....+++..++.++....+.+.+-..+... ..+....|++.++|.+.-+.
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDGL 231 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 3 33443322 2346899999999999999988765433211 12566788999999885443
No 132
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.72 E-value=0.00025 Score=82.80 Aligned_cols=175 Identities=17% Similarity=0.253 Sum_probs=98.5
Q ss_pred CCCCCCceehhhHHHHHHHhhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhh
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCV-----------GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREES 304 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~ 304 (1223)
.....++.|.+...++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|- .+. .
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~---- 212 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-G---- 212 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-h----
Confidence 33456788998888888775531 1123577899999999999999999997644331 111 0
Q ss_pred ccCCHHHHHHHHHHHHhhhccCcCCCCc-hHHHHHHHhcCeEEEEecCCCCHH----------------HHHHHhcCCCC
Q 000922 305 ERGGLVYLRERLYSEILEETLKIRTPSV-PKCIKERLQQMKVFVVLDDVNKPE----------------QLDYLAGGLDR 367 (1223)
Q Consensus 305 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~ 367 (1223)
..+... ..+. .... ...+.......+.+|++|+++... .+..+...+..
T Consensus 213 -----s~l~~k----~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 213 -----SEFVQK----YLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred -----HHHHHH----hcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 011111 0000 0000 112222234678999999986421 12233322222
Q ss_pred C--CCCCEEEEEeCChhhhhh-----cCCCceEEecCCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCCCc
Q 000922 368 F--GLGSRVVVTSRDRQVFDK-----CRVDKIYEVEGLNQNEALEHFSNYAFRQNI-CPKDFLVLSERIVFYANGNP 436 (1223)
Q Consensus 368 ~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlP 436 (1223)
+ ..+-.||+||.....+.. ...+..++++..+.++..++|..+.-+... ...++ .+++..+.|.-
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 1 235568888876443321 134677999999999999999876543221 12233 34555565543
No 133
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.72 E-value=0.00025 Score=74.68 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=62.0
Q ss_pred cCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCC
Q 000922 342 QMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDR-QVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNIC 417 (1223)
Q Consensus 342 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 417 (1223)
+.+-++|+|+++.. +..+.|...+....+.+.+|++|++. .+.... .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 45668999999764 34666776666656677788777654 332221 23468999999999999888776 1 1
Q ss_pred ChhHHHHHHHHHHHhCCCch
Q 000922 418 PKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 418 ~~~~~~l~~~i~~~~~GlPL 437 (1223)
. .+.+..+++.++|.|.
T Consensus 170 ~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 S---EEAAELLLALAGGSPG 186 (188)
T ss_pred C---HHHHHHHHHHcCCCcc
Confidence 1 3567899999999885
No 134
>PRK06620 hypothetical protein; Validated
Probab=97.70 E-value=0.00046 Score=73.80 Aligned_cols=131 Identities=10% Similarity=-0.006 Sum_probs=76.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcC
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQM 343 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 343 (1223)
+.+.|||++|+|||+||+++++.... .++... . . . . +..+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~---~--~-----~-------------------~----~~~~-~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI---F--F-----N-------------------E----EILE-K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh---h--h-----c-------------------h----hHHh-c
Confidence 67899999999999999987775421 222100 0 0 0 0 0111 2
Q ss_pred eEEEEecCCCCHHH--HHHHhcCCCCCCCCCEEEEEeCChhh-------hhhcCCCceEEecCCCHHHHHHHHHHhhhcC
Q 000922 344 KVFVVLDDVNKPEQ--LDYLAGGLDRFGLGSRVVVTSRDRQV-------FDKCRVDKIYEVEGLNQNEALEHFSNYAFRQ 414 (1223)
Q Consensus 344 r~LlVLDdv~~~~~--~~~l~~~~~~~~~gsrIIiTTR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~ 414 (1223)
.-++++||++...+ +-.+...+. ..|..||+|++...- ...+...-+++++++++++-.+++.+.+-..
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 34678899975432 222221111 356789999885322 2223344589999999999888888776432
Q ss_pred CCCChhHHHHHHHHHHHhCCCch
Q 000922 415 NICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 415 ~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
.. .-.+++..-|++++.|.--
T Consensus 164 ~l--~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 164 SV--TISRQIIDFLLVNLPREYS 184 (214)
T ss_pred CC--CCCHHHHHHHHHHccCCHH
Confidence 21 1123556666666665543
No 135
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.68 E-value=0.0008 Score=81.06 Aligned_cols=178 Identities=18% Similarity=0.170 Sum_probs=102.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCc--ceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEG--RCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL 340 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 340 (1223)
..-+.|+|.+|+|||+||+++++.+..++.. ++|+. . ..+..++...+.. .....+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~--------~~~~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFTNDFVNALRN--------NTMEEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHHc--------CcHHHHHHHH
Confidence 4568899999999999999999988777643 23332 1 1222333333211 0133445555
Q ss_pred hcCeEEEEecCCCCHH----HHHHHhcCCCC-CCCCCEEEEEeCChh---------hhhhcCCCceEEecCCCHHHHHHH
Q 000922 341 QQMKVFVVLDDVNKPE----QLDYLAGGLDR-FGLGSRVVVTSRDRQ---------VFDKCRVDKIYEVEGLNQNEALEH 406 (1223)
Q Consensus 341 ~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 406 (1223)
+. .-+|||||++... ..+.+...+.. ...|..|||||.... +...+....++++++++.++..++
T Consensus 210 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 RS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred hc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 53 4478899996421 11222221111 123556888886531 122233446899999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHH----HHhh--hccC--CHHHHHHHHhhh
Q 000922 407 FSNYAFRQNICPKDFLVLSERIVFYANGNPLALKV----LGSF--LQRK--CKLQWENALKNL 461 (1223)
Q Consensus 407 f~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~----lg~~--L~~~--~~~~w~~~l~~l 461 (1223)
+.+.+-.... .-.+++...|++.+.|..-.|.- +..+ +.++ +....+.++..+
T Consensus 289 l~~~~~~~~~--~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 289 LKKKAEEEGI--DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9998754321 12235677788888877654332 2221 1122 455566666654
No 136
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.68 E-value=0.00045 Score=76.83 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=71.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhcc--CcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHH
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISNDF--EGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKER 339 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 339 (1223)
...-+.++|++|+||||+|+.+++.+...- ....++. ++. .. +.....++ ....+++.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~-------~~----l~~~~~g~--------~~~~~~~~ 100 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER-------AD----LVGEYIGH--------TAQKTREV 100 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH-------HH----hhhhhccc--------hHHHHHHH
Confidence 456788999999999999999998653211 1111221 111 01 11111000 01112222
Q ss_pred Hh-cCeEEEEecCCCC----------HHHHHHHhcCCCCCCCCCEEEEEeCChhhhh------hc--CCCceEEecCCCH
Q 000922 340 LQ-QMKVFVVLDDVNK----------PEQLDYLAGGLDRFGLGSRVVVTSRDRQVFD------KC--RVDKIYEVEGLNQ 400 (1223)
Q Consensus 340 L~-~kr~LlVLDdv~~----------~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~------~~--~~~~~~~l~~L~~ 400 (1223)
++ ...-+|++|+++. .++++.+............+|+++.....-. .. .....++++.++.
T Consensus 101 ~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~ 180 (261)
T TIGR02881 101 IKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTV 180 (261)
T ss_pred HHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCH
Confidence 21 1234788999975 2345666655444333345556654432210 00 1235688999999
Q ss_pred HHHHHHHHHhhhc
Q 000922 401 NEALEHFSNYAFR 413 (1223)
Q Consensus 401 ~ea~~Lf~~~af~ 413 (1223)
+|-.+++.+.+-.
T Consensus 181 ~el~~Il~~~~~~ 193 (261)
T TIGR02881 181 EELMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877643
No 137
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.0012 Score=83.86 Aligned_cols=187 Identities=11% Similarity=0.062 Sum_probs=107.8
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc--cCc-ceeeeechhhhccCCHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND--FEG-RCFMANVREESERGGLVYL 312 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~-~~~~~~~~~~~~~~~l~~l 312 (1223)
|....++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+.+.+--. ... -|=. + .-
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~----C--------~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE----C--------DS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc----c--------HH
Confidence 4556789999999999999886432 23567899999999999999999865311 100 0000 0 00
Q ss_pred HHHHHHH------Hhh-hccCcCCCCchHHHHHH-----HhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEe
Q 000922 313 RERLYSE------ILE-ETLKIRTPSVPKCIKER-----LQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTS 378 (1223)
Q Consensus 313 ~~~ll~~------l~~-~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTT 378 (1223)
.+.+... +.. +.......+.+..+++. ..+++-++|||+++.. ...+.|+..+......+.+|++|
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 0000000 000 00000000111222222 2245557889999865 44666776666556677767666
Q ss_pred CC-hhhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 379 RD-RQVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 379 R~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
.+ ..+... ......|++..++.++..+++.+.+-..+.. ...+....|++.++|.+.
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 44 344433 2234689999999999988887765333321 122445778889999874
No 138
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.67 E-value=0.001 Score=79.20 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=91.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCc--ceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEG--RCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL 340 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 340 (1223)
...+.|+|.+|+|||+||+++++.+..+... ++|+. . ..+..++...+... ....+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~--------~~~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDFVNALRNN--------KMEEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 3568899999999999999999988766432 33432 1 12223333333211 133444455
Q ss_pred hcCeEEEEecCCCCHH---H-HHHHhcCCCC-CCCCCEEEEEeCCh-h--------hhhhcCCCceEEecCCCHHHHHHH
Q 000922 341 QQMKVFVVLDDVNKPE---Q-LDYLAGGLDR-FGLGSRVVVTSRDR-Q--------VFDKCRVDKIYEVEGLNQNEALEH 406 (1223)
Q Consensus 341 ~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gsrIIiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~L 406 (1223)
++ .-+|||||++... . .+.+...+.. ...|..||||+... . +...+....++++++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 44 3478899996431 1 1222222111 12355688887642 1 122222335789999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 000922 407 FSNYAFRQNICPKDFLVLSERIVFYANGNPLALK 440 (1223)
Q Consensus 407 f~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 440 (1223)
+.+.+-..... -.+++...|++.+.|..-.|.
T Consensus 277 l~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLE--LPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHH
Confidence 99887543321 123566777777777765443
No 139
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=4.6e-05 Score=58.46 Aligned_cols=39 Identities=28% Similarity=0.606 Sum_probs=22.8
Q ss_pred CCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccc
Q 000922 892 SLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLP 930 (1223)
Q Consensus 892 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 930 (1223)
+|++|+|++|+++++|..++++++|+.|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666655666666666666666665554
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.65 E-value=0.00047 Score=87.92 Aligned_cols=169 Identities=15% Similarity=0.216 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhcc------
Q 000922 218 LVDEIIEDILKKLKDKSFSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDF------ 291 (1223)
Q Consensus 218 ~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------ 291 (1223)
.+++...++..+. .+...+.++||+.+++++...|.... ..-+.++|.+|+|||++|+.+++++...-
T Consensus 164 ~l~~~~~~l~~~~----r~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~ 237 (731)
T TIGR02639 164 ALEKYTVDLTEKA----KNGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK 237 (731)
T ss_pred HHHHHhhhHHHHH----hcCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 4555555554444 23455689999999999999886543 33567999999999999999999874431
Q ss_pred CcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH-hcCeEEEEecCCCCH-----------HHHH
Q 000922 292 EGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL-QQMKVFVVLDDVNKP-----------EQLD 359 (1223)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~-----------~~~~ 359 (1223)
...+|..+... +. .. .......+.....+.+.+ ..++++|++|+++.. +.-+
T Consensus 238 ~~~~~~~~~~~---------l~----a~---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~ 301 (731)
T TIGR02639 238 NAKIYSLDMGS---------LL----AG---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN 301 (731)
T ss_pred CCeEEEecHHH---------Hh----hh---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH
Confidence 22333322111 10 00 000000000112222222 246789999998643 1223
Q ss_pred HHhcCCCCCCCC-CEEEEEeCChhhhh------h-cCCCceEEecCCCHHHHHHHHHHhh
Q 000922 360 YLAGGLDRFGLG-SRVVVTSRDRQVFD------K-CRVDKIYEVEGLNQNEALEHFSNYA 411 (1223)
Q Consensus 360 ~l~~~~~~~~~g-srIIiTTR~~~v~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~a 411 (1223)
.+.+.+. .| -++|-+|...+... . ...-..++++.++.++..+++....
T Consensus 302 ~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 302 LLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 3333332 23 24444444321110 0 1123578999999999999998654
No 141
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.002 Score=76.97 Aligned_cols=195 Identities=16% Similarity=0.150 Sum_probs=108.1
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc---cCc-ceee-eechhhhccCCHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND---FEG-RCFM-ANVREESERGGLV 310 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---F~~-~~~~-~~~~~~~~~~~l~ 310 (1223)
|...++++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+-.. -+. .|-. .+.+.........
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 4566889999999999999885432 23667899999999999999999865321 000 0000 0000000000000
Q ss_pred HHHHHHHHHHhhhccCcCCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-hh
Q 000922 311 YLRERLYSEILEETLKIRTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD-RQ 382 (1223)
Q Consensus 311 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~~ 382 (1223)
+..+.+. .....+....+.+.+ .+++-++|+|+++.. +..+.|...+....+...+|++|.+ ..
T Consensus 92 ------~~~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~k 163 (451)
T PRK06305 92 ------VLEIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHK 163 (451)
T ss_pred ------eEEeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHh
Confidence 0000000 000000011111111 255678899999754 3455666555544556667766643 33
Q ss_pred hhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch-HHHH
Q 000922 383 VFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL-ALKV 441 (1223)
Q Consensus 383 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~ 441 (1223)
+... ......+++..+++++....+...+-..+.. -..+.+..++++++|.+- |+..
T Consensus 164 l~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 164 IPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred cchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 1234679999999999988888766433221 123566788899998764 4433
No 142
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00092 Score=82.85 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=111.2
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRER 315 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ 315 (1223)
|...+++||-+.-++.|...+..+. -...+.++|..|+||||+|+.+++.+.......- ....+.....+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--------~~~c~~c~~c~~ 82 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--------GRPCGTCEMCRA 82 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--------CCCCccCHHHHH
Confidence 4566789999999999988885442 2456789999999999999999987632110000 000000111111
Q ss_pred HHHHHhhhccCcC-----CCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-hh
Q 000922 316 LYSEILEETLKIR-----TPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD-RQ 382 (1223)
Q Consensus 316 ll~~l~~~~~~~~-----~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~~ 382 (1223)
+............ ..+....+.+.+ .+++-++|+|+++.. +..+.|...+....+.+.+|++|.+ ..
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 1110000000000 000122222222 245668999999754 4566676655554556677766654 33
Q ss_pred hhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 000922 383 VFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKV 441 (1223)
Q Consensus 383 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 441 (1223)
+... ......+++..++.++....+.+.+...+..- ..+.+..+++.++|.+..+..
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 3322 12335788999999999888887765433211 125667889999998864433
No 143
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.00088 Score=82.61 Aligned_cols=196 Identities=12% Similarity=0.097 Sum_probs=110.6
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhh---ccCCHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREES---ERGGLVY 311 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~---~~~~l~~ 311 (1223)
.|....+++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+-.+..+.. ...++..
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 3556678999999999999988543 23466789999999999999999986422100000000000000 0000000
Q ss_pred HHHHHHHHHhhhccCcCCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEe-CChhh
Q 000922 312 LRERLYSEILEETLKIRTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTS-RDRQV 383 (1223)
Q Consensus 312 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTT-R~~~v 383 (1223)
.........+..+.+.+.+ .+++-++|+|+++.. ..+.+|+..+....+...+|++| +...+
T Consensus 92 ----------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KL 161 (725)
T PRK07133 92 ----------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKI 161 (725)
T ss_pred ----------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhh
Confidence 0000000001122222222 245668899999754 45777776665545555655555 44444
Q ss_pred hhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch-HHHHHH
Q 000922 384 FDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL-ALKVLG 443 (1223)
Q Consensus 384 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~lg 443 (1223)
... ......+++.+++.++..+.+...+-..+... ..+.+..+++.++|.+- |+..+-
T Consensus 162 l~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 162 PLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 432 22346899999999999988887654333211 12456788899988764 444433
No 144
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0018 Score=77.88 Aligned_cols=184 Identities=15% Similarity=0.138 Sum_probs=109.8
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhh-ccCc--ceeeee-ch----------
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN-DFEG--RCFMAN-VR---------- 301 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~--~~~~~~-~~---------- 301 (1223)
|...+++||-+..++.|...+..+. -.++..++|+.|.||||+|+.+++.+-. .... -|.... .+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 4566789999988899998885442 3456789999999999999999986521 1100 010000 00
Q ss_pred ---hhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEE
Q 000922 302 ---EESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVV 376 (1223)
Q Consensus 302 ---~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIi 376 (1223)
......++..+...+ ..... .-..+++-++|+|+++.. +..++|+..+....+.+++|+
T Consensus 89 ~eldaas~~gId~IReli-e~~~~---------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 89 IEMDAASNRGIDDIRELI-EQTKY---------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred EEeccccccCHHHHHHHH-HHHhh---------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 000001111111111 00000 000145568899999764 446677766665566778777
Q ss_pred EeCCh-hhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 000922 377 TSRDR-QVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 377 TTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 438 (1223)
+|.+. .+... ......+++.+++.++..+.+.+.+-..+... ..+.+..|++.++|.+--
T Consensus 153 ~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~ 214 (535)
T PRK08451 153 ATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRD 214 (535)
T ss_pred EECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHH
Confidence 77664 22221 12346899999999999998887764433221 135667889999998843
No 145
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.0016 Score=77.51 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=86.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQ 342 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 342 (1223)
..-+.|+|..|+|||+||+++++.+..+...++|+. ...+...+...+.. .....++..++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~--------~~~~~f~~~~~~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRS--------GEMQRFRQFYRN 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhc--------chHHHHHHHccc
Confidence 356789999999999999999998765544445552 11222333333211 112334444443
Q ss_pred CeEEEEecCCCCHH----HHHHHhcCCCC-CCCCCEEEEEeCCh---------hhhhhcCCCceEEecCCCHHHHHHHHH
Q 000922 343 MKVFVVLDDVNKPE----QLDYLAGGLDR-FGLGSRVVVTSRDR---------QVFDKCRVDKIYEVEGLNQNEALEHFS 408 (1223)
Q Consensus 343 kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 408 (1223)
.-++++||+.... ..+.+...+.. ...|..||+||... .+...+...-++++++++.++..+++.
T Consensus 203 -~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 203 -VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred -CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 4477889985531 11222211110 12456788888642 122223334688999999999999999
Q ss_pred HhhhcCCCCChhHHHHHHHHHHHhCCC
Q 000922 409 NYAFRQNICPKDFLVLSERIVFYANGN 435 (1223)
Q Consensus 409 ~~af~~~~~~~~~~~l~~~i~~~~~Gl 435 (1223)
+++-..+.. -.+++..-|+..+.|.
T Consensus 282 ~k~~~~~~~--l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALSIR--IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcCCC--CCHHHHHHHHHhcCCC
Confidence 887543211 1124445555555544
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.54 E-value=0.0013 Score=84.40 Aligned_cols=170 Identities=16% Similarity=0.159 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhcc------
Q 000922 218 LVDEIIEDILKKLKDKSFSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDF------ 291 (1223)
Q Consensus 218 ~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------ 291 (1223)
.+++...++..+. .+...+.+|||+.++.++...|.... ..-+.++|.+|+||||+|+.+++++....
T Consensus 169 ~l~~~~~~L~~~~----r~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~ 242 (852)
T TIGR03345 169 ALDQYTTDLTAQA----REGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR 242 (852)
T ss_pred hHHHHhhhHHHHh----cCCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCcccc
Confidence 4555554544443 34456789999999999999886543 23556999999999999999999875432
Q ss_pred CcceeeeechhhhccCC-HHHHHHHHHHHHhhhccCcCCCCchHHHHHHH-hcCeEEEEecCCCCHH-------HHH---
Q 000922 292 EGRCFMANVREESERGG-LVYLRERLYSEILEETLKIRTPSVPKCIKERL-QQMKVFVVLDDVNKPE-------QLD--- 359 (1223)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~-------~~~--- 359 (1223)
...+|..+......... .-.+.+++ ...+.+.- .+++++|++|++.... +.+
T Consensus 243 ~~~i~~l~l~~l~ag~~~~ge~e~~l----------------k~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n 306 (852)
T TIGR03345 243 NVRLLSLDLGLLQAGASVKGEFENRL----------------KSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN 306 (852)
T ss_pred CCeEEEeehhhhhcccccchHHHHHH----------------HHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH
Confidence 12233222211100000 00000000 11111111 2468999999986542 111
Q ss_pred HHhcCCCCCCCCCEEEEEeCChhhhhh-------cCCCceEEecCCCHHHHHHHHHHhh
Q 000922 360 YLAGGLDRFGLGSRVVVTSRDRQVFDK-------CRVDKIYEVEGLNQNEALEHFSNYA 411 (1223)
Q Consensus 360 ~l~~~~~~~~~gsrIIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 411 (1223)
.|.+.+. ...-++|-||........ ......+.|+.++.+++.+++....
T Consensus 307 ~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 307 LLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 2333322 112455655554322111 1123589999999999999975443
No 147
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.54 E-value=8.3e-05 Score=80.94 Aligned_cols=92 Identities=18% Similarity=0.136 Sum_probs=59.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhh-ccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCC------c-hH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISN-DFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPS------V-PK 334 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~------~-~~ 334 (1223)
-..++|+|++|+|||||++++|+.+.. +|+..+|+..+.+. ..++.++++++...+.....+..... . ..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er--~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER--PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC--CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999997644 68989898755432 24677888777333222221211100 0 11
Q ss_pred HHHHH-HhcCeEEEEecCCCCHH
Q 000922 335 CIKER-LQQMKVFVVLDDVNKPE 356 (1223)
Q Consensus 335 ~l~~~-L~~kr~LlVLDdv~~~~ 356 (1223)
..+.. -.++++++++|++....
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhh
Confidence 12211 24799999999997643
No 148
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.52 E-value=3.5e-05 Score=80.61 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=43.0
Q ss_pred CCCCCceeecCCcccccCCccccccccccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCCC------CchhhcCCCCC
Q 000922 843 NLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVME------IPQDIGRASSL 916 (1223)
Q Consensus 843 ~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~------lp~~l~~l~~L 916 (1223)
+-+.|+...+..|.+...|..... ..+..-.+|+.+.+..|.+.. +-..+..+.+|
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a------------------~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~L 216 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSA------------------ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSL 216 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHH------------------HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcc
Confidence 445677777777766654332110 011122345555555554442 11223445666
Q ss_pred cEEeCCCCCCcccc-----hhhcCCCCCCEEeccCC
Q 000922 917 EILDISGNDFDSLP-----ASIKQLSRLRELYLSNC 947 (1223)
Q Consensus 917 ~~L~Ls~n~l~~lp-----~~l~~l~~L~~L~L~~~ 947 (1223)
+.|||..|-|+..- ..+...+.|+.|.+.+|
T Consensus 217 evLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 217 EVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred eeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 66666666665221 22344455666666666
No 149
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0026 Score=76.47 Aligned_cols=191 Identities=12% Similarity=0.064 Sum_probs=107.9
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhh---cc--Ccceeeeechhhhc--cCC
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN---DF--EGRCFMANVREESE--RGG 308 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~F--~~~~~~~~~~~~~~--~~~ 308 (1223)
|....+++|-+.-++.+...+..+. -.+...++|+.|+||||+|+.++..+-. .. ++.. ..+...... ..+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g~~~d 89 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKGSFPD 89 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcCCCCc
Confidence 4556789999999999999885532 3456778999999999999999986531 10 1000 000000000 000
Q ss_pred HHHHHHHHHHHHhhhccCcCCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-
Q 000922 309 LVYLRERLYSEILEETLKIRTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD- 380 (1223)
Q Consensus 309 l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~- 380 (1223)
+.. + ........+..+.+.+.. .+++-++|+|+++.. ...+.|...+....+...+|++|.+
T Consensus 90 ~~e--------i--daas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 90 LIE--------I--DAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred EEE--------E--eCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 000 0 000000000122233222 245679999999754 3456666665554556666665543
Q ss_pred hhhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 000922 381 RQVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALK 440 (1223)
Q Consensus 381 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 440 (1223)
..+... ......+++.+++.++....+...+-..+... ..+.+..+++.++|.+..+.
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 333322 12345789999999999888887764433211 12456778888888775433
No 150
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.48 E-value=0.0032 Score=70.66 Aligned_cols=128 Identities=16% Similarity=0.098 Sum_probs=70.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhcc--CcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHh-
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISNDF--EGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQ- 341 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~- 341 (1223)
-+.++|.+|.||||+|+.++..+...- ....|+... .. .+...+.+.. ...+++.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~--------~~----~l~~~~~g~~--------~~~~~~~~~~ 119 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT--------RD----DLVGQYIGHT--------APKTKEILKR 119 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec--------HH----HHhHhhcccc--------hHHHHHHHHH
Confidence 578999999999999999888654321 111233111 01 1121111110 011122221
Q ss_pred cCeEEEEecCCCCH-----------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhhc--------CCCceEEecCCCHHH
Q 000922 342 QMKVFVVLDDVNKP-----------EQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKC--------RVDKIYEVEGLNQNE 402 (1223)
Q Consensus 342 ~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~--------~~~~~~~l~~L~~~e 402 (1223)
...-+|+||+++.. +..+.|...+.....+-+||+++.....-... .....+++++++.+|
T Consensus 120 a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 120 AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 23468889999632 22445555444444556677776543221111 124578999999999
Q ss_pred HHHHHHHhhh
Q 000922 403 ALEHFSNYAF 412 (1223)
Q Consensus 403 a~~Lf~~~af 412 (1223)
-.+++...+-
T Consensus 200 l~~I~~~~l~ 209 (284)
T TIGR02880 200 LLVIAGLMLK 209 (284)
T ss_pred HHHHHHHHHH
Confidence 9999988763
No 151
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.0012 Score=70.40 Aligned_cols=264 Identities=16% Similarity=0.178 Sum_probs=138.2
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcC---CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVG---LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVY 311 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~ 311 (1223)
.|....+|||-+.-.++|.-.+... ....--|.++|++|.||||||.-+++.+...+.... ...-++. .+
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts-----Gp~leK~--gD 93 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS-----GPALEKP--GD 93 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc-----cccccCh--hh
Confidence 3556788999998888887766532 234567899999999999999999998765543110 0000000 00
Q ss_pred HHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCHHH-HHH-HhcCCC--------CCCCCCE--------
Q 000922 312 LRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKPEQ-LDY-LAGGLD--------RFGLGSR-------- 373 (1223)
Q Consensus 312 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~-~~~-l~~~~~--------~~~~gsr-------- 373 (1223)
...+-..|+..-+ +.+|.+..... .++ |-+... ..|+++|
T Consensus 94 ---------------------laaiLt~Le~~DV-LFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 94 ---------------------LAAILTNLEEGDV-LFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ---------------------HHHHHhcCCcCCe-EEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 1111112222333 34566654321 111 111111 1244444
Q ss_pred ---EEEEeCChhhhhhc--CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhhcc
Q 000922 374 ---VVVTSRDRQVFDKC--RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKVLGSFLQR 448 (1223)
Q Consensus 374 ---IIiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~ 448 (1223)
|=-|||--.+..-+ ...-+.+++.-+.+|-.+...+.|..-+. +-.++-+.+|+++..|-|--..-+-+..+
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLLrRVR- 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLLRRVR- 228 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHHHHHH-
Confidence 34688864433221 12236788889999999999988743221 12235678999999999953222222111
Q ss_pred CCHHHHHHHHhh--hccCCCCcHHhHHHHhHhcccHhHHhHhheeecccCC--CCHHHHHHHhcCCC-CHHhhH-HHHHh
Q 000922 449 KCKLQWENALKN--LTRISDPDIYDMLKISYNELKQEEKSIFLDIACFFKG--DDKDFMTRIQDDPE-SVHYGL-NVLVD 522 (1223)
Q Consensus 449 ~~~~~w~~~l~~--l~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~~~~~l~~~~-~~~~~l-~~L~~ 522 (1223)
++..+-.. +.....+...+.|.+-=.+|+...++.+.-+.-.+.| ..++.+...+.... ..+..+ --|+.
T Consensus 229 ----Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq 304 (332)
T COG2255 229 ----DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQ 304 (332)
T ss_pred ----HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 11100000 0000001123334444445666666555555444433 33455555444333 222222 25899
Q ss_pred ccceEEecCCeE
Q 000922 523 KSLVALSCNNKL 534 (1223)
Q Consensus 523 ~sLi~~~~~~~~ 534 (1223)
.++|+....|++
T Consensus 305 ~gfi~RTpRGR~ 316 (332)
T COG2255 305 QGFIQRTPRGRI 316 (332)
T ss_pred hchhhhCCCcce
Confidence 999988776665
No 152
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=4.5e-05 Score=80.85 Aligned_cols=178 Identities=20% Similarity=0.253 Sum_probs=96.7
Q ss_pred CccEEEccCCCccc---ccccccccCccceeeeccccccccCcccc-ccCCcccEEeecCCcCc-ccchhhhccccccee
Q 000922 728 NVIELDLKGTAIEE---IPSSIECLTKLEELDLAYCRRLKSLPSSI-CKLKSLHLLCLYNCSNF-EIFPEILEKMECLEY 802 (1223)
Q Consensus 728 ~L~~L~L~~~~i~~---lp~~i~~L~~L~~L~L~~c~~l~~lp~~i-~~L~~L~~L~L~~c~~~-~~~p~~l~~l~~L~~ 802 (1223)
.++.|||.+|.|+. +-.-+.+|+.|++|+|+.|.....+-. + ..+.+|++|.|.|.... ......+..++.++.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 67788888888773 444456788888888886543222111 1 23556777766653321 122233445555555
Q ss_pred eecCCCCcccccc---ccccC-CCCcEEEccCCCCCCCCccccCCCCCCceeecCCcccccCCccccccccccEEEccCC
Q 000922 803 IDLESTAVKELPS---SVEQL-KGLRELILEDCSELSKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGC 878 (1223)
Q Consensus 803 L~L~~n~l~~lp~---~i~~l-~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~ 878 (1223)
|+++.|++..+-. .+... +.+.+| ..++++..++.+-|.+..+ ++++..+-+..|
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tl---------------h~~~c~~~~w~~~~~l~r~------Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTL---------------HQLPCLEQLWLNKNKLSRI------FPNVNSVFVCEG 209 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhh---------------hcCCcHHHHHHHHHhHHhh------cccchheeeecC
Confidence 6555554332110 00000 011111 1222333333333333322 345556666666
Q ss_pred CCCCCC--ccccCCCCCCEEEcCCCCCCCC--chhhcCCCCCcEEeCCCCCCc
Q 000922 879 RGLVLP--PILSGLSSLTKLDLSDCDVMEI--PQDIGRASSLEILDISGNDFD 927 (1223)
Q Consensus 879 ~~~~~p--~~~~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~Ls~n~l~ 927 (1223)
+..+.. .....++.+-.|+|+.+++.+. .+.+..+++|..|.+++|.+.
T Consensus 210 PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 210 PLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 543322 2355677777899999988763 355788999999999988765
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.47 E-value=0.0024 Score=82.41 Aligned_cols=170 Identities=14% Similarity=0.088 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhcc------
Q 000922 218 LVDEIIEDILKKLKDKSFSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDF------ 291 (1223)
Q Consensus 218 ~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------ 291 (1223)
.+++...++..+. .+...+.+|||+.++.++...|+... ..-+.++|.+|+||||||+.++.++....
T Consensus 160 ~l~~~~~~l~~~~----r~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~ 233 (857)
T PRK10865 160 ALKKYTIDLTERA----EQGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLK 233 (857)
T ss_pred HHHHHhhhHHHHH----hcCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhC
Confidence 4555555544444 23455679999999999999986543 33566999999999999999999875422
Q ss_pred CcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH--hcCeEEEEecCCCCHH----------HHH
Q 000922 292 EGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL--QQMKVFVVLDDVNKPE----------QLD 359 (1223)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~~----------~~~ 359 (1223)
...+|..+........ ......+.....+-+.+ .+++++|++|++.... .-+
T Consensus 234 ~~~~~~l~l~~l~ag~----------------~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~ 297 (857)
T PRK10865 234 GRRVLALDMGALVAGA----------------KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGN 297 (857)
T ss_pred CCEEEEEehhhhhhcc----------------chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHH
Confidence 2233332221110000 00000000011111111 2468999999986542 122
Q ss_pred HHhcCCCCCCCCCEEEEEeCChhhhhh-------cCCCceEEecCCCHHHHHHHHHHhh
Q 000922 360 YLAGGLDRFGLGSRVVVTSRDRQVFDK-------CRVDKIYEVEGLNQNEALEHFSNYA 411 (1223)
Q Consensus 360 ~l~~~~~~~~~gsrIIiTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 411 (1223)
.|.+.+. ...-++|-+|........ ...-..+.+...+.++..+++....
T Consensus 298 ~lkp~l~--~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 298 MLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred Hhcchhh--cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 3333322 113345555554432110 1122367788889999999886544
No 154
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0032 Score=77.93 Aligned_cols=194 Identities=16% Similarity=0.121 Sum_probs=109.0
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc-cCcceeeeechhhhccCCHHHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND-FEGRCFMANVREESERGGLVYLRE 314 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~l~~l~~ 314 (1223)
|....+++|.+..++.|..++..+. -.+.+.++|..|+||||+|+.++..+-.. .+.... ...+.-...+
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~--------~~Cg~C~~C~ 82 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP--------EPCGKCELCR 82 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC--------CCCcccHHHH
Confidence 4456789999999999999886542 23567899999999999999999875332 110000 0001011111
Q ss_pred HHHHHHhhhccCcC--CCCchHHHHH---HH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-h
Q 000922 315 RLYSEILEETLKIR--TPSVPKCIKE---RL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD-R 381 (1223)
Q Consensus 315 ~ll~~l~~~~~~~~--~~~~~~~l~~---~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~ 381 (1223)
.+......+..... .....+.+++ .+ .+++-++|+|+++.. +..+.|+..+........+|++|.+ .
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 11111000000000 0001222222 21 244568899999864 4566776666544445555655554 3
Q ss_pred hhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHH
Q 000922 382 QVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALK 440 (1223)
Q Consensus 382 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 440 (1223)
.+... ......+++..++.++....+.+.+-..+..- -.+.+..|++.++|.+..+.
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 33332 22346788899999998888877664432211 12456788899999875443
No 155
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.0026 Score=76.99 Aligned_cols=153 Identities=15% Similarity=0.194 Sum_probs=89.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCc--ceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHh
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEG--RCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQ 341 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 341 (1223)
..+.|||..|.|||.|++++++.....+.. ++|+. ...+..++...+.. .....++++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~--------~~~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRD--------GKGDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHh--------ccHHHHHHHhh
Confidence 358999999999999999999987664432 34442 12233333332211 01333444444
Q ss_pred cCeEEEEecCCCCH---HHH-HHHhcCCCC-CCCCCEEEEEeCCh---------hhhhhcCCCceEEecCCCHHHHHHHH
Q 000922 342 QMKVFVVLDDVNKP---EQL-DYLAGGLDR-FGLGSRVVVTSRDR---------QVFDKCRVDKIYEVEGLNQNEALEHF 407 (1223)
Q Consensus 342 ~kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 407 (1223)
+- =+|||||++.. +.+ +.+...+.. ...|..|||||+.. .+...+...-+++++..+.+.-.+++
T Consensus 377 ~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 EM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred cC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 43 47888999643 111 222222111 13466788988862 22233445568999999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 408 SNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 408 ~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
.+++-..... --+++..-|++.+.+..-
T Consensus 456 ~kka~~r~l~--l~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 456 RKKAVQEQLN--APPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHhcCCC--CCHHHHHHHHHhccCCHH
Confidence 9887543321 123555666666655543
No 156
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.46 E-value=0.0059 Score=73.18 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=83.5
Q ss_pred CCCceehhhHHHHHHHhh---h-----cCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHH
Q 000922 239 FEGLVGIYSRIEQIKSLL---C-----VGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLV 310 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L---~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~ 310 (1223)
.+++.|.+...+.+.... . .+-...+-|.++|++|.|||.+|+++++.+.-.| +..+...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~-------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK-------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH--------
Confidence 456788776665554321 1 1123356789999999999999999999764332 1111111
Q ss_pred HHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCHHH--------------HHHHhcCCCCCCCCCEEEE
Q 000922 311 YLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKPEQ--------------LDYLAGGLDRFGLGSRVVV 376 (1223)
Q Consensus 311 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--------------~~~l~~~~~~~~~gsrIIi 376 (1223)
+.....+. ........++..-...+++|++|+++..-. +..+...+.....+--||.
T Consensus 295 -----l~~~~vGe----se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 -----LFGGIVGE----SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred -----hcccccCh----HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 00000000 000001112212235789999999874210 1112211121223334566
Q ss_pred EeCChhhh-----hhcCCCceEEecCCCHHHHHHHHHHhhhc
Q 000922 377 TSRDRQVF-----DKCRVDKIYEVEGLNQNEALEHFSNYAFR 413 (1223)
Q Consensus 377 TTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 413 (1223)
||.+...+ .....+..+.++..+.++-.++|..+..+
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 77654322 22235678999999999999999988754
No 157
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.46 E-value=1.1e-05 Score=75.80 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=54.2
Q ss_pred EEccCCCCCCCCcccc-CCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccchhhcCCCCCCEEeccCCC
Q 000922 873 LSFHGCRGLVLPPILS-GLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCS 948 (1223)
Q Consensus 873 L~l~~~~~~~~p~~~~-~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 948 (1223)
.++++|....+|+.+. .++.++.|+|++|.++++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..+|.
T Consensus 58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred EecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 3444444444444333 445778888888888888888888888888888888888888777777777777777664
No 158
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.44 E-value=0.0046 Score=75.65 Aligned_cols=190 Identities=13% Similarity=0.057 Sum_probs=110.7
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc-----cCcceeeeechhhhcc--C
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND-----FEGRCFMANVREESER--G 307 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~--~ 307 (1223)
.|...+++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-.. +++. .....+..... .
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~-~C~~C~~i~~~~~~ 88 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG-ECSSCKSIDNDNSL 88 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc-cchHHHHHHcCCCC
Confidence 35567889999999999999886432 34678899999999999999999865321 1100 00000000000 0
Q ss_pred CHHHHHHHHHHHHhhhccCcCCCCchHHHHHH-----HhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC
Q 000922 308 GLVYLRERLYSEILEETLKIRTPSVPKCIKER-----LQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD 380 (1223)
Q Consensus 308 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~ 380 (1223)
++.. +.+ ......+....+.+. ..+++-++|+|+++.. ..++.|...+....+...+|++|.+
T Consensus 89 dv~~--------idg--as~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 89 DVIE--------IDG--ASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred CeEE--------ecC--cccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 0000 000 000000011112211 1245668899999765 4477777776655566777666654
Q ss_pred -hhhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 000922 381 -RQVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 381 -~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 438 (1223)
..+... ......++...++.++..+.+...+...+... -.+.+..|++.++|.+-.
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~ 216 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRD 216 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 333322 22345789999999999888888765443221 235567788888997753
No 159
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.43 E-value=0.0002 Score=81.67 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=62.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhc-cCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCc-------hH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISND-FEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSV-------PK 334 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~-------~~ 334 (1223)
-..++|+|++|.|||||++.+++.+..+ |+..+|+..+++. ...+.++++.++..+.....+...... .+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER--~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC--CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3578999999999999999999977655 9999998766442 246778888886544433322211111 11
Q ss_pred HHHH-HHhcCeEEEEecCCCCHHH
Q 000922 335 CIKE-RLQQMKVFVVLDDVNKPEQ 357 (1223)
Q Consensus 335 ~l~~-~L~~kr~LlVLDdv~~~~~ 357 (1223)
..+. +-++++++|++|++.....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHHH
Confidence 1111 1358999999999976543
No 160
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.42 E-value=0.00026 Score=69.39 Aligned_cols=87 Identities=23% Similarity=0.382 Sum_probs=45.7
Q ss_pred ccEEEcCcccccccchHHHHHHHHhhC-------CCcc-cc---------cC-CCCCCCCccHHHHHHHhhcceEEEEec
Q 000922 66 YDVFVSFRGEDTRDNFTSHLVAALCRK-------KIKT-FI---------DE-QLDRGDDISPALLDAIERSKISVIIFS 127 (1223)
Q Consensus 66 ~dvFis~~g~d~~~~f~~~l~~~L~~~-------gi~~-f~---------d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S 127 (1223)
|.|||||+.+|- ......|...+... .+.. |. +. +....+.|...|.++|.+|.+.||++|
T Consensus 1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 689999999983 33667777777663 2221 11 21 223345789999999999999999999
Q ss_pred cCcccchhhHHHHHHHHHHhhcCCCEEEEE
Q 000922 128 ENYASSKWCLDELVKILECKNKNAQMVVPV 157 (1223)
Q Consensus 128 ~~y~~S~wcl~El~~i~~~~~~~~~~v~Pv 157 (1223)
++-+.|+|+-.|+..+++.. ..|+-|
T Consensus 80 ~~T~~s~wV~~EI~~A~~~~----~~Ii~V 105 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALKKG----KPIIGV 105 (130)
T ss_dssp TT----HHHHHHHHHHTTT-------EEEE
T ss_pred CCcccCcHHHHHHHHHHHCC----CCEEEE
Confidence 99999999999999877633 335554
No 161
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0036 Score=77.41 Aligned_cols=178 Identities=15% Similarity=0.174 Sum_probs=107.3
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc-----------------------cC
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND-----------------------FE 292 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----------------------F~ 292 (1223)
|...+++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+--. |+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 4566789999999999998885432 24668899999999999999998865311 11
Q ss_pred cceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH--HHHHHHhcCCCCCCC
Q 000922 293 GRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGL 370 (1223)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 370 (1223)
.. .+ + .....+...+. +++.++... -..+++=++|+|+++.. ...+.|...+.....
T Consensus 92 ~~-~l-d---~~~~~~vd~Ir-~li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 92 IH-EL-D---AASNNSVDDIR-NLIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred eE-Ee-c---ccccCCHHHHH-HHHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 00 00 0 00000111111 111110000 01234557899999764 346667666655556
Q ss_pred CCEEEEEe-CChhhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 371 GSRVVVTS-RDRQVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 371 gsrIIiTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
.+.+|++| +...+... .....++++.+++.++....+.+.+-..+... ..+.+..|+..++|..-
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr 217 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMR 217 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 67766655 44444433 23346899999999999988888765443221 12456788889988764
No 162
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=7.7e-05 Score=92.81 Aligned_cols=127 Identities=23% Similarity=0.234 Sum_probs=80.4
Q ss_pred CCCCcEEEccCCCCC-CCCccccCCCCCCceeecCCcccccCCccccccccccEEEccCCCCCCCCc--cccCCCCCCEE
Q 000922 820 LKGLRELILEDCSEL-SKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPP--ILSGLSSLTKL 896 (1223)
Q Consensus 820 l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~p~--~~~~l~~L~~L 896 (1223)
||+|++|.+.+-... ..+.....++++|..||+++++++.+ ..+++|++|+.|.+.+-....... .+.+|++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 566777766653322 12233345677777778888777777 677778888888777655443221 35578888888
Q ss_pred EcCCCCCCCCch-------hhcCCCCCcEEeCCCCCCc--ccchhhcCCCCCCEEeccCC
Q 000922 897 DLSDCDVMEIPQ-------DIGRASSLEILDISGNDFD--SLPASIKQLSRLRELYLSNC 947 (1223)
Q Consensus 897 ~L~~~~l~~lp~-------~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~~ 947 (1223)
|+|.......+. .-..||.|+.||.|++.+. -+..-+..-++|+.+.+-+|
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 888776554331 1245889999999988776 23333455566666655443
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.38 E-value=0.0032 Score=81.66 Aligned_cols=169 Identities=12% Similarity=0.140 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhcc------
Q 000922 218 LVDEIIEDILKKLKDKSFSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDF------ 291 (1223)
Q Consensus 218 ~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------ 291 (1223)
.+++...++..+. .+...+.+|||+.+++++...|+... ..-+.++|.+|+|||++|+.++.++...+
T Consensus 155 ~l~~~~~~l~~~~----~~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~ 228 (852)
T TIGR03346 155 ALEKYARDLTERA----REGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLK 228 (852)
T ss_pred HHHHHhhhHHHHh----hCCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhc
Confidence 4444444444333 33455679999999999999986543 24456899999999999999999875532
Q ss_pred CcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHh--cCeEEEEecCCCCHH----------HHH
Q 000922 292 EGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQ--QMKVFVVLDDVNKPE----------QLD 359 (1223)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~----------~~~ 359 (1223)
...+|..++.. +. . +.......+.....+.+.+. +++++|++|++.... ..+
T Consensus 229 ~~~~~~l~~~~---------l~----a---~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~ 292 (852)
T TIGR03346 229 NKRLLALDMGA---------LI----A---GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGN 292 (852)
T ss_pred CCeEEEeeHHH---------Hh----h---cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHH
Confidence 22333322211 00 0 00000000001122222222 468999999987542 122
Q ss_pred HHhcCCCCCCCC-CEEEEEeCChhhhh-------hcCCCceEEecCCCHHHHHHHHHHhh
Q 000922 360 YLAGGLDRFGLG-SRVVVTSRDRQVFD-------KCRVDKIYEVEGLNQNEALEHFSNYA 411 (1223)
Q Consensus 360 ~l~~~~~~~~~g-srIIiTTR~~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a 411 (1223)
.|.+.+ ..| -++|-+|.....-. ....-..+.++.++.++..+++....
T Consensus 293 ~Lk~~l---~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 293 MLKPAL---ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred Hhchhh---hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 233222 222 34454444433211 01123568899999999999887653
No 164
>CHL00176 ftsH cell division protein; Validated
Probab=97.37 E-value=0.0015 Score=80.72 Aligned_cols=173 Identities=20% Similarity=0.220 Sum_probs=96.6
Q ss_pred CCCCceehhhHHHHHHHhhh---cC-------CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccC
Q 000922 238 DFEGLVGIYSRIEQIKSLLC---VG-------LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERG 307 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 307 (1223)
..++++|.+...+++.+.+. .. ..-.+-|.++|++|.|||++|++++......|- .+ .. +
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i---~i-s~---s--- 250 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFF---SI-SG---S--- 250 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCee---ec-cH---H---
Confidence 44678888877666655442 11 112456899999999999999999986532221 11 10 0
Q ss_pred CHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCHH----------------HHHHHhcCCCCC--C
Q 000922 308 GLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKPE----------------QLDYLAGGLDRF--G 369 (1223)
Q Consensus 308 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~ 369 (1223)
.+..... + .........+.......+.+|+|||++... .+..+...+..+ .
T Consensus 251 ---~f~~~~~----g----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 ---EFVEMFV----G----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred ---HHHHHhh----h----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 0110000 0 000001223334445678999999996431 133444333322 2
Q ss_pred CCCEEEEEeCChhhhhh-----cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC
Q 000922 370 LGSRVVVTSRDRQVFDK-----CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANG 434 (1223)
Q Consensus 370 ~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~G 434 (1223)
.+-.||.||........ ...+..+.++..+.++-.+++..++-..... .......+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 35566767766443321 1245788999999999999999887442211 11234566666666
No 165
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.34 E-value=0.0015 Score=79.70 Aligned_cols=175 Identities=18% Similarity=0.210 Sum_probs=93.9
Q ss_pred CCCCCceehhhHHHHHHHhhh---c-------CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhcc
Q 000922 237 SDFEGLVGIYSRIEQIKSLLC---V-------GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESER 306 (1223)
Q Consensus 237 ~~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 306 (1223)
...++++|.+...+++.+++. . +..-.+-+.++|++|.|||++|++++......|- ..+.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~----~i~~------ 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF----SISG------ 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCee----eccH------
Confidence 344678888877666655442 1 1122345889999999999999999986432221 1110
Q ss_pred CCHHHHHHHHHHHHhhhccCcCCCCc-hHHHHHHHhcCeEEEEecCCCCHH----------------HHHHHhcCCCCC-
Q 000922 307 GGLVYLRERLYSEILEETLKIRTPSV-PKCIKERLQQMKVFVVLDDVNKPE----------------QLDYLAGGLDRF- 368 (1223)
Q Consensus 307 ~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~- 368 (1223)
..+.... .+ . .... ...+.......+.+|+|||++... .+..+...+...
T Consensus 122 ---~~~~~~~----~g----~-~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 122 ---SDFVEMF----VG----V-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred ---HHHHHHH----hc----c-cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 0111100 00 0 0001 222233334567899999996531 122333333222
Q ss_pred -CCCCEEEEEeCChhhhh-----hcCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc
Q 000922 369 -GLGSRVVVTSRDRQVFD-----KCRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNP 436 (1223)
Q Consensus 369 -~~gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 436 (1223)
..+-.||.||......+ ....+..++++..+.++..++|..++-....... .....+++.+.|.-
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~s 260 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGFS 260 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCCC
Confidence 23444566665543222 1234678999999999999999887643222111 12346677776643
No 166
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.33 E-value=0.0076 Score=67.04 Aligned_cols=165 Identities=17% Similarity=0.167 Sum_probs=98.1
Q ss_pred CCCceehhhHHHHHHHhhhcCCCCe-EEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHH
Q 000922 239 FEGLVGIYSRIEQIKSLLCVGLPDF-QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLY 317 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~~~~~-~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll 317 (1223)
.+.+.+|+..+..+..++...+..+ ..|-|+|-+|.|||.+.+++.+.... ..+|+..+ +.+..+.+..+++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~----ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCV----ECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehH----HhccHHHHHHHHH
Confidence 4578899999999999997665543 45689999999999999999987622 34677543 3456667777777
Q ss_pred HHHh-hhccCcCCCC---c----hHHHHH--HHh--cCeEEEEecCCCCHHHHHH-----HhcCCCCCCCCCEEEEEeCC
Q 000922 318 SEIL-EETLKIRTPS---V----PKCIKE--RLQ--QMKVFVVLDDVNKPEQLDY-----LAGGLDRFGLGSRVVVTSRD 380 (1223)
Q Consensus 318 ~~l~-~~~~~~~~~~---~----~~~l~~--~L~--~kr~LlVLDdv~~~~~~~~-----l~~~~~~~~~gsrIIiTTR~ 380 (1223)
.+.. ...++..... . ...+++ ... ++.++||||+++...+.++ +.....-.....-+|+++-.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 7664 2222211111 0 111221 111 4699999999987654222 11110000111334444443
Q ss_pred hh---hhhhcCCC--ceEEecCCCHHHHHHHHHHh
Q 000922 381 RQ---VFDKCRVD--KIYEVEGLNQNEALEHFSNY 410 (1223)
Q Consensus 381 ~~---v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~ 410 (1223)
.. -...+|.. -++..+.-+.+|-.+++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 21 12223433 35677888999999988764
No 167
>PRK08116 hypothetical protein; Validated
Probab=97.33 E-value=0.00066 Score=75.30 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=56.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcC
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQM 343 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 343 (1223)
.-+.++|.+|+|||.||.++++.+..+-..++|+. ...+...+...... ........+.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~-----~~~~~~~~~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKS-----SGKEDENEIIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhc-----cccccHHHHHHHhcCC
Confidence 45889999999999999999998876644445542 12233333222211 0111133344555544
Q ss_pred eEEEEecCCCC--HHH--HHHHhcCCCC-CCCCCEEEEEeCC
Q 000922 344 KVFVVLDDVNK--PEQ--LDYLAGGLDR-FGLGSRVVVTSRD 380 (1223)
Q Consensus 344 r~LlVLDdv~~--~~~--~~~l~~~~~~-~~~gsrIIiTTR~ 380 (1223)
. ||||||+.. ... .+.+...+.. ...|..+||||..
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4 889999932 222 2222222211 2356679999864
No 168
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.33 E-value=0.00018 Score=55.15 Aligned_cols=41 Identities=34% Similarity=0.556 Sum_probs=34.2
Q ss_pred CCCcEEeCCCCCCcccchhhcCCCCCCEEeccCCCCCCCCCC
Q 000922 914 SSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLPE 955 (1223)
Q Consensus 914 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~ 955 (1223)
++|++|++++|+|+.+|+.+.+|++|+.|++++|+ +..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 57999999999999999989999999999999995 445543
No 169
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0079 Score=68.26 Aligned_cols=191 Identities=13% Similarity=0.087 Sum_probs=107.5
Q ss_pred CCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhh---------------ccCcceeeeechhhh
Q 000922 240 EGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN---------------DFEGRCFMANVREES 304 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------~F~~~~~~~~~~~~~ 304 (1223)
++++|-+...+.+...+..+. -.....++|+.|+||+++|.+++..+-. .++...|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 568999999999998885442 2478899999999999999999886422 12222333211000
Q ss_pred ccCCHHHHHHHHHHHHhhhcc--CcCCCCchHHHHHHHh-----cCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEE
Q 000922 305 ERGGLVYLRERLYSEILEETL--KIRTPSVPKCIKERLQ-----QMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVV 375 (1223)
Q Consensus 305 ~~~~l~~l~~~ll~~l~~~~~--~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrII 375 (1223)
+... .-...+........ ..-..+..+.+.+.+. +++-++|+|+++.. ....+|+..+.... .+.+|
T Consensus 82 ~g~~---~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 82 QGKL---ITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccc---cchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0000 00000000000000 0000111233333332 45668889998764 34566666554444 44555
Q ss_pred EEeCC-hhhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 000922 376 VTSRD-RQVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKV 441 (1223)
Q Consensus 376 iTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 441 (1223)
++|.+ ..++... .....+++.++++++..+.+........ .......++..++|.|.....
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-----chhHHHHHHHHcCCCHHHHHH
Confidence 55544 4444432 3447899999999999999987642111 111135788999999965443
No 170
>CHL00181 cbbX CbbX; Provisional
Probab=97.28 E-value=0.0059 Score=68.47 Aligned_cols=130 Identities=15% Similarity=0.122 Sum_probs=72.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhc-c-CcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHh
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISND-F-EGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQ 341 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 341 (1223)
..+.++|.+|+||||+|+.+++..... + ...-|+... ... +.....+.. ....++.++
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~--------~~~----l~~~~~g~~--------~~~~~~~l~ 119 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT--------RDD----LVGQYIGHT--------APKTKEVLK 119 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec--------HHH----HHHHHhccc--------hHHHHHHHH
Confidence 357899999999999999998864321 1 111122111 111 222111110 011112221
Q ss_pred -cCeEEEEecCCCCH-----------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhhc--------CCCceEEecCCCHH
Q 000922 342 -QMKVFVVLDDVNKP-----------EQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKC--------RVDKIYEVEGLNQN 401 (1223)
Q Consensus 342 -~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~--------~~~~~~~l~~L~~~ 401 (1223)
...-+|+||+++.. +..+.|...+.......+||+++....+.... .....+++++++.+
T Consensus 120 ~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 120 KAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred HccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 22348899999642 33455555444444556777777643332111 23468999999999
Q ss_pred HHHHHHHHhhhc
Q 000922 402 EALEHFSNYAFR 413 (1223)
Q Consensus 402 ea~~Lf~~~af~ 413 (1223)
|..+++...+-.
T Consensus 200 el~~I~~~~l~~ 211 (287)
T CHL00181 200 ELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHH
Confidence 999999887744
No 171
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0057 Score=67.54 Aligned_cols=194 Identities=18% Similarity=0.270 Sum_probs=111.2
Q ss_pred CCceehhhHHHHHHHhhhcC-----------CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCC
Q 000922 240 EGLVGIYSRIEQIKSLLCVG-----------LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGG 308 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 308 (1223)
.++=|.+..+++|.+..... -+..+=|.+||++|.|||-||++|+++....|- ..+..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFI-----rvvgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFI-----RVVGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEE-----EeccH------
Confidence 44556666666665544221 123567889999999999999999998665543 22211
Q ss_pred HHHHHHHHHHHHhhhccCcCCCCchHHHHHHH----hcCeEEEEecCCCCHH--------------H--HHHHhcCCCCC
Q 000922 309 LVYLRERLYSEILEETLKIRTPSVPKCIKERL----QQMKVFVVLDDVNKPE--------------Q--LDYLAGGLDRF 368 (1223)
Q Consensus 309 l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~--------------~--~~~l~~~~~~~ 368 (1223)
.+.++ ..++. ...+++.. .+.+..|.+|.++... | +-.|+..++.|
T Consensus 220 --ElVqK----YiGEG--------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 220 --ELVQK----YIGEG--------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred --HHHHH----Hhccc--------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 11111 11111 22222222 3568899999885421 1 33444445544
Q ss_pred CC--CCEEEEEeCChhhhh-----hcCCCceEEecCCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCCCc----
Q 000922 369 GL--GSRVVVTSRDRQVFD-----KCRVDKIYEVEGLNQNEALEHFSNYAFRQNI-CPKDFLVLSERIVFYANGNP---- 436 (1223)
Q Consensus 369 ~~--gsrIIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlP---- 436 (1223)
.+ .-+||..|...+++. --..+..++++..+.+--.++|.-|+-+.+. ..-+++ .+++.+.|.-
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdl 361 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADL 361 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHH
Confidence 43 457888887655443 2245788999987888888899888765442 223443 4445555543
Q ss_pred hHHHHHHhhhc--c-C---CHHHHHHHHhhhc
Q 000922 437 LALKVLGSFLQ--R-K---CKLQWENALKNLT 462 (1223)
Q Consensus 437 Lal~~lg~~L~--~-~---~~~~w~~~l~~l~ 462 (1223)
-|+.+=|++++ . + +.+++..+.++..
T Consensus 362 kaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 362 KAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 34555555553 2 2 4556666665543
No 172
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.26 E-value=0.0016 Score=84.09 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc-c-----
Q 000922 218 LVDEIIEDILKKLKDKSFSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND-F----- 291 (1223)
Q Consensus 218 ~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F----- 291 (1223)
.+++...++..+- .....+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.++.++... -
T Consensus 161 ~l~~~~~~l~~~a----~~~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~ 234 (821)
T CHL00095 161 TLEEFGTNLTKEA----IDGNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILE 234 (821)
T ss_pred HHHHHHHHHHHHH----HcCCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 4555555554432 12234568999999999999996543 2345799999999999999999976532 1
Q ss_pred CcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCC-CCc-hHHHHHHHhcCeEEEEecCCCCHH----------HHH
Q 000922 292 EGRCFMANVREESERGGLVYLRERLYSEILEETLKIRT-PSV-PKCIKERLQQMKVFVVLDDVNKPE----------QLD 359 (1223)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~-~~~-~~~l~~~L~~kr~LlVLDdv~~~~----------~~~ 359 (1223)
...+|..+...... +.. .... ++. ...+.+.-..++++|++|+++... .-+
T Consensus 235 ~~~i~~l~~~~l~a----------------g~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~ 297 (821)
T CHL00095 235 DKLVITLDIGLLLA----------------GTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAAN 297 (821)
T ss_pred CCeEEEeeHHHHhc----------------cCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHH
Confidence 12344332211100 000 0000 001 112222223568999999985321 112
Q ss_pred HHhcCCCCCCCCCEEEEEeCChhhhh------h-cCCCceEEecCCCHHHHHHHHHHh
Q 000922 360 YLAGGLDRFGLGSRVVVTSRDRQVFD------K-CRVDKIYEVEGLNQNEALEHFSNY 410 (1223)
Q Consensus 360 ~l~~~~~~~~~gsrIIiTTR~~~v~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~ 410 (1223)
.|.+.+. .| .-++|.+|....... . ......++++..+.++...++...
T Consensus 298 lLkp~l~-rg-~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 298 ILKPALA-RG-ELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhHHHHh-CC-CcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 2222221 11 234555555443211 1 112356788999999988887653
No 173
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0062 Score=74.82 Aligned_cols=190 Identities=13% Similarity=0.102 Sum_probs=107.7
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhcc-CcceeeeechhhhccCCHHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDF-EGRCFMANVREESERGGLVYLR 313 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~l~~l~ 313 (1223)
.|...++++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+-..- ... ...+.-...
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~----------~pC~~C~~C 79 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG----------EPCNECEIC 79 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC----------CCCCccHHH
Confidence 35567899999999999999886543 346677899999999999999988642110 000 000000001
Q ss_pred HHHHHHHhhhccCc-----CCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC-C
Q 000922 314 ERLYSEILEETLKI-----RTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSR-D 380 (1223)
Q Consensus 314 ~~ll~~l~~~~~~~-----~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR-~ 380 (1223)
+.+......+...+ ...+....+.+.. .+++-++|+|+++.. .....|...+....+...+|++|. .
T Consensus 80 ~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 80 KAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 11100000000000 0001122232322 345668899999864 456677766554444555555554 3
Q ss_pred hhhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 381 RQVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 381 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
..+... ......++...++.++..+.+...+-..+...+ .+.+..|++.++|.+.
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R 215 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMR 215 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 333332 123457889999999988888877644332211 2456778888888774
No 174
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.25 E-value=0.002 Score=66.31 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=41.0
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
|....++||-++.++.+.-.-. +.++.-+.|.||+|+||||-+..+++.+-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 4455789999999988876653 34577888999999999999999998653
No 175
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.22 E-value=2e-05 Score=74.17 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=61.8
Q ss_pred CCCCCCceeecCCcccccCCcccccc-ccccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEe
Q 000922 842 GNLKSLKRLFAKRSAISKLPSSIAYL-DEVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILD 920 (1223)
Q Consensus 842 ~~l~~L~~L~l~~n~i~~lp~~~~~l-~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 920 (1223)
.....|+..++++|.+..+|..+... +.++.|++.+|....+|..+..++.|+.|+++.|.+...|..+..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 33344555566666666665554432 35666666666666666667777778888888888877777777777888888
Q ss_pred CCCCCCcccchhh
Q 000922 921 ISGNDFDSLPASI 933 (1223)
Q Consensus 921 Ls~n~l~~lp~~l 933 (1223)
..+|.+..+|-.+
T Consensus 130 s~~na~~eid~dl 142 (177)
T KOG4579|consen 130 SPENARAEIDVDL 142 (177)
T ss_pred CCCCccccCcHHH
Confidence 8888777777553
No 176
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.0038 Score=71.91 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=84.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHh
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQ 341 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 341 (1223)
....+-|||..|.|||.|++++.+......+...++... .......+...+.. .....+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~--------se~f~~~~v~a~~~--------~~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT--------SEDFTNDFVKALRD--------NEMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc--------HHHHHHHHHHHHHh--------hhHHHHHHhh-
Confidence 356899999999999999999999887777633333111 11223333333322 1245566666
Q ss_pred cCeEEEEecCCCCHH---H-HHHHhcCCCC-CCCCCEEEEEeCCh---------hhhhhcCCCceEEecCCCHHHHHHHH
Q 000922 342 QMKVFVVLDDVNKPE---Q-LDYLAGGLDR-FGLGSRVVVTSRDR---------QVFDKCRVDKIYEVEGLNQNEALEHF 407 (1223)
Q Consensus 342 ~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gsrIIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 407 (1223)
.-=++++||++-.. . -+.+...+.. ...|-+||+|++.. .+...++..-++++.+++.+.....+
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 34478899995421 1 1222222111 13445899999752 23333445678999999999999999
Q ss_pred HHhhhcCC
Q 000922 408 SNYAFRQN 415 (1223)
Q Consensus 408 ~~~af~~~ 415 (1223)
.+.+....
T Consensus 254 ~kka~~~~ 261 (408)
T COG0593 254 RKKAEDRG 261 (408)
T ss_pred HHHHHhcC
Confidence 98775433
No 177
>PRK12377 putative replication protein; Provisional
Probab=97.19 E-value=0.0071 Score=65.92 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=29.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
...+.++|.+|+|||+||.++++.+..+...+.|+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 45789999999999999999999887665555665
No 178
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.19 E-value=0.0032 Score=61.81 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHh
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 179
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.0067 Score=69.19 Aligned_cols=205 Identities=12% Similarity=0.153 Sum_probs=121.0
Q ss_pred CCCCCceehhhHHHHHHHhhhc--CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCc--ceeeeechhhhccCCHHHH
Q 000922 237 SDFEGLVGIYSRIEQIKSLLCV--GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEG--RCFMANVREESERGGLVYL 312 (1223)
Q Consensus 237 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~l~~l 312 (1223)
..+..++||+.++..+..++.. +....+.+-|.|-+|.|||.+...++.+....... ++++... + -.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~---s-l~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT---S-LTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec---c-ccchHHH
Confidence 3457899999999999998864 34556788999999999999999999876554433 3555422 1 1233456
Q ss_pred HHHHHHHHhhhccCcCCC-CchHHHHHHHhcC--eEEEEecCCCCHHH--HHHHhcCCCCC-CCCCEEEEEeCCh-----
Q 000922 313 RERLYSEILEETLKIRTP-SVPKCIKERLQQM--KVFVVLDDVNKPEQ--LDYLAGGLDRF-GLGSRVVVTSRDR----- 381 (1223)
Q Consensus 313 ~~~ll~~l~~~~~~~~~~-~~~~~l~~~L~~k--r~LlVLDdv~~~~~--~~~l~~~~~~~-~~gsrIIiTTR~~----- 381 (1223)
...++..+.......... +....+....++. .+|+|||..|.... -+.+...+.|. -+++|+|+.---.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 666666664333322222 2255555555543 58999999876532 22222223332 3677776543221
Q ss_pred -hhhhhc----C-CCceEEecCCCHHHHHHHHHHhhhcCCC---CChhHHHHHHHHHHHhCCCchHHHHHHhh
Q 000922 382 -QVFDKC----R-VDKIYEVEGLNQNEALEHFSNYAFRQNI---CPKDFLVLSERIVFYANGNPLALKVLGSF 445 (1223)
Q Consensus 382 -~v~~~~----~-~~~~~~l~~L~~~ea~~Lf~~~af~~~~---~~~~~~~l~~~i~~~~~GlPLal~~lg~~ 445 (1223)
..+... + ....+..++-+.++-.+++..+.-.... .+...+-.|++++.-.|.+--||.+.-+.
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 111111 1 2357788899999999999988633221 11233334444444444555555554433
No 180
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.15 E-value=0.00016 Score=90.09 Aligned_cols=106 Identities=22% Similarity=0.201 Sum_probs=69.9
Q ss_pred ccccceeecccCCcC----CccCCCCCCCccEEEccCCCcccccccccccCccceeeeccccccccCc--cccccCCccc
Q 000922 704 HFRTLIEIDFSYCIN----LTEFPEISGNVIELDLKGTAIEEIPSSIECLTKLEELDLAYCRRLKSLP--SSICKLKSLH 777 (1223)
Q Consensus 704 ~~~~L~~L~Ls~c~~----l~~~p~~~~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lp--~~i~~L~~L~ 777 (1223)
.+|+|+.|.+++-.. ...+-..++||..||+++++++.+ ..+++|++|+.|.+.+=... .-. ..+.+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCC-chhhHHHHhcccCCC
Confidence 456666666655221 122334455888889999999888 78899999999988762222 111 1356799999
Q ss_pred EEeecCCcCcccc------hhhhcccccceeeecCCCCcc
Q 000922 778 LLCLYNCSNFEIF------PEILEKMECLEYIDLESTAVK 811 (1223)
Q Consensus 778 ~L~L~~c~~~~~~------p~~l~~l~~L~~L~L~~n~l~ 811 (1223)
+||+|........ -+.-..+++|+.||.+++.+.
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9999986554432 112235788888888888776
No 181
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.13 E-value=0.0026 Score=80.12 Aligned_cols=151 Identities=16% Similarity=0.190 Sum_probs=83.9
Q ss_pred CCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhcc------CcceeeeechhhhccCCHHHH
Q 000922 239 FEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDF------EGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~l~~l 312 (1223)
.+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.++.++...- +..+|..+. .
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~-- 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------G-- 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------H--
Confidence 3569999999999999887642 23446899999999999999998753321 222222111 1
Q ss_pred HHHHHHHHhhhccCcCCCC-chHHHHHHH-hcCeEEEEecCCCCH----------HHHHH-HhcCCCCCCCC-CEEEEEe
Q 000922 313 RERLYSEILEETLKIRTPS-VPKCIKERL-QQMKVFVVLDDVNKP----------EQLDY-LAGGLDRFGLG-SRVVVTS 378 (1223)
Q Consensus 313 ~~~ll~~l~~~~~~~~~~~-~~~~l~~~L-~~kr~LlVLDdv~~~----------~~~~~-l~~~~~~~~~g-srIIiTT 378 (1223)
.++. +.. .....+ ....+.+.+ +.++.+|++|+++.. .+... +.+.+ ..| -+||-+|
T Consensus 252 --~lla---G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---~~g~i~vIgAT 322 (758)
T PRK11034 252 --SLLA---GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---SSGKIRVIGST 322 (758)
T ss_pred --HHhc---ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---hCCCeEEEecC
Confidence 1110 000 000001 122222222 356789999999643 11211 22222 223 3444444
Q ss_pred CChhhhhh-------cCCCceEEecCCCHHHHHHHHHHhh
Q 000922 379 RDRQVFDK-------CRVDKIYEVEGLNQNEALEHFSNYA 411 (1223)
Q Consensus 379 R~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 411 (1223)
...+.... ...-..++|+.++.+++.+++....
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 43332110 1122579999999999999998654
No 182
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.10 E-value=0.033 Score=59.45 Aligned_cols=55 Identities=22% Similarity=0.419 Sum_probs=40.6
Q ss_pred CCCCCCceehhhHHHHHHHh---hhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhcc
Q 000922 236 SSDFEGLVGIYSRIEQIKSL---LCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDF 291 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~---L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 291 (1223)
+...+.++|.+...+.|.+= +..+ ....-|.+||..|.|||++++++.+.+..+=
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 34557899999988887542 2122 2345677899999999999999999876543
No 183
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.005 Score=76.01 Aligned_cols=192 Identities=11% Similarity=0.118 Sum_probs=107.0
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc--cCc-ceeeeechhhhccCCHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND--FEG-RCFMANVREESERGGLVYL 312 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~-~~~~~~~~~~~~~~~l~~l 312 (1223)
|...+++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. ... -|-. -..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~------------c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV------------CPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc------------cHH
Confidence 456788999998889999888543 224567899999999999999999865321 100 0000 000
Q ss_pred HHHHHHHHhhhc---cCc--CCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC
Q 000922 313 RERLYSEILEET---LKI--RTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD 380 (1223)
Q Consensus 313 ~~~ll~~l~~~~---~~~--~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~ 380 (1223)
...+...-.... ... ...+....+.+.+ .+++-++|+|+|+.. ...+.|...+....+...+|++|.+
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~ 158 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence 000000000000 000 0000122222222 234457889999764 3466666665554556676655544
Q ss_pred -hhhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc-hHHHHH
Q 000922 381 -RQVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNP-LALKVL 442 (1223)
Q Consensus 381 -~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~l 442 (1223)
..+... ......+++..++.++....+...+-..+..- ..+....|++.++|.. .|+..+
T Consensus 159 ~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 159 PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 444432 22345788999999998888877654333211 1245677888888865 344443
No 184
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.09 E-value=0.0049 Score=72.51 Aligned_cols=119 Identities=21% Similarity=0.193 Sum_probs=77.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCe
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMK 344 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr 344 (1223)
++.|.|+-++||||+++.+.....+. .+|+...........+.+..+ .+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~--------------------~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLR--------------------AYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHH--------------------HHHHhhccCC
Confidence 99999999999999996666554443 444432111111111111111 1111111278
Q ss_pred EEEEecCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh------cCCCceEEecCCCHHHHHHHH
Q 000922 345 VFVVLDDVNKPEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDK------CRVDKIYEVEGLNQNEALEHF 407 (1223)
Q Consensus 345 ~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~------~~~~~~~~l~~L~~~ea~~Lf 407 (1223)
..|+||.|.....|+.....+...++. +|+||+-+..+... .|....+++-+|+..|-..+-
T Consensus 96 ~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 96 SYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred ceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 899999999999998887777666666 89999887654332 245678999999999987654
No 185
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.013 Score=66.97 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=61.6
Q ss_pred CeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCC
Q 000922 343 MKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDR-QVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICP 418 (1223)
Q Consensus 343 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 418 (1223)
.|++ |+|+++.. +....|+..+....+++.+|+||.+. .++.. ......+.+.+++.+++.+.+.... . ..
T Consensus 107 ~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~-~~-- 181 (328)
T PRK05707 107 RKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P-ES-- 181 (328)
T ss_pred CeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c-cC--
Confidence 4444 67999864 45677776666556678888888775 33333 2234679999999999999887653 1 11
Q ss_pred hhHHHHHHHHHHHhCCCchHHHHH
Q 000922 419 KDFLVLSERIVFYANGNPLALKVL 442 (1223)
Q Consensus 419 ~~~~~l~~~i~~~~~GlPLal~~l 442 (1223)
..+.+..++..++|.|+....+
T Consensus 182 --~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233457788999999754443
No 186
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.06 E-value=0.013 Score=63.83 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=28.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
...+.++|.+|+|||+||.++++.+..+-..++|+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45788999999999999999999876654445555
No 187
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.00 E-value=0.003 Score=77.58 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=44.2
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCC---CCeEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGL---PDFQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
.|...++++|-+..++++..++.... ...+++.|+|++|.||||+++.++..+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45667889999999999999886533 3357899999999999999999998653
No 188
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.0013 Score=66.70 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=61.4
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCCCCchhhcC-CCCCcEEeCCCCCCcccch--hhcCCCCCCEEeccC
Q 000922 870 VIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGR-ASSLEILDISGNDFDSLPA--SIKQLSRLRELYLSN 946 (1223)
Q Consensus 870 L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l~~-l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~ 946 (1223)
...+++++|....++. +..+++|.+|.|.+|.++.+.+.+.. +++|..|.|.+|++..+-. .+..+|+|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 3344444444333332 55677788888888888876666543 5678888888888775542 356778888888888
Q ss_pred CCCCCCCC------CccCCCcEEeccCCc
Q 000922 947 CSMLQSLP------ELPLRVKLLDASNCK 969 (1223)
Q Consensus 947 ~~~l~~lp------~l~~~L~~L~~~~c~ 969 (1223)
|+....-- -..|+|+.||..+-+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhhh
Confidence 76543110 123567777766543
No 189
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.98 E-value=0.012 Score=64.64 Aligned_cols=184 Identities=11% Similarity=0.032 Sum_probs=105.1
Q ss_pred HHHHHHHhhhcCC-CCeEEEEEEccCCCchHHHHHHHHHHHhhccCc------ceeeeechhhhccCCHHHHHHHHHHHH
Q 000922 248 RIEQIKSLLCVGL-PDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEG------RCFMANVREESERGGLVYLRERLYSEI 320 (1223)
Q Consensus 248 ~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~------~~~~~~~~~~~~~~~l~~l~~~ll~~l 320 (1223)
.++.|.++|.... ....-+.|+|.+|+|||++++++.......++. ++.+ +.....+...+...|+.++
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v----q~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV----QMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE----ecCCCCChHHHHHHHHHHh
Confidence 4556666665432 345679999999999999999999865444432 2222 3455678889999999998
Q ss_pred hhhccCcCCCCc-hHHHHHHHhc-CeEEEEecCCCCHH-----HHHHHhcCCCC---CCCCCEEEEEeCCh--------h
Q 000922 321 LEETLKIRTPSV-PKCIKERLQQ-MKVFVVLDDVNKPE-----QLDYLAGGLDR---FGLGSRVVVTSRDR--------Q 382 (1223)
Q Consensus 321 ~~~~~~~~~~~~-~~~l~~~L~~-kr~LlVLDdv~~~~-----~~~~l~~~~~~---~~~gsrIIiTTR~~--------~ 382 (1223)
............ ...+...++. +-=+||+|.+.+.- +-..++..+.. .-.=+-|.+-|++. +
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 766544333333 3334455553 34478999996631 11111111111 12234455555543 3
Q ss_pred hhhhcCCCceEEecCCCHHHHH-HHHHHhhh--cCCCC-ChhHHHHHHHHHHHhCCCchH
Q 000922 383 VFDKCRVDKIYEVEGLNQNEAL-EHFSNYAF--RQNIC-PKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 383 v~~~~~~~~~~~l~~L~~~ea~-~Lf~~~af--~~~~~-~~~~~~l~~~i~~~~~GlPLa 438 (1223)
++.. ...+.++....++-. .|+..... .-..+ .-...+++..|...++|+.=-
T Consensus 201 La~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 201 LASR---FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred HHhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 3322 246677777665444 44433211 10111 123357889999999998743
No 190
>PRK10536 hypothetical protein; Provisional
Probab=96.97 E-value=0.0032 Score=67.81 Aligned_cols=52 Identities=19% Similarity=0.131 Sum_probs=38.6
Q ss_pred CCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHH-H-hhccCcc
Q 000922 239 FEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQ-I-SNDFEGR 294 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~ 294 (1223)
...+.++......+..++.. ..+|.+.|.+|.|||+||.++..+ + .+.|+..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kI 107 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRI 107 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEE
Confidence 34567777777777777743 249999999999999999999874 4 4445533
No 191
>PRK08181 transposase; Validated
Probab=96.95 E-value=0.0016 Score=71.87 Aligned_cols=34 Identities=24% Similarity=0.175 Sum_probs=27.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
.-+.++|.+|+|||.||.++.+....+...+.|+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 4589999999999999999999776655445565
No 192
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.95 E-value=0.0059 Score=78.26 Aligned_cols=173 Identities=17% Similarity=0.207 Sum_probs=91.4
Q ss_pred CCCCceehhhHHHHHHHhhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhcc
Q 000922 238 DFEGLVGIYSRIEQIKSLLCV-----------GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESER 306 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 306 (1223)
..+++.|++..++++.+++.. +-...+-|.++|++|.||||||+++++.....| +.+ +.......
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i-~~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISI-NGPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEE-ecHHHhcc
Confidence 345678888888888776532 112346788999999999999999998764433 112 11111000
Q ss_pred -CCH-HHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCHH-------------HHHHHhcCCCCC-CC
Q 000922 307 -GGL-VYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKPE-------------QLDYLAGGLDRF-GL 370 (1223)
Q Consensus 307 -~~l-~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~-~~ 370 (1223)
.+. .... ...+.......+.+|+||+++... ....+...+... ..
T Consensus 252 ~~g~~~~~l-------------------~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 252 YYGESEERL-------------------REIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred cccHHHHHH-------------------HHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 000 0000 122222234567889999985421 122333222221 23
Q ss_pred CCEEEE-EeCChh-hhhhc----CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc
Q 000922 371 GSRVVV-TSRDRQ-VFDKC----RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNP 436 (1223)
Q Consensus 371 gsrIIi-TTR~~~-v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 436 (1223)
+..++| ||.... +.... ..+..+++...+.++..+++..+.-...... ......+++.+.|.-
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 444454 444332 11111 2345788888899998888886542211111 112355666677654
No 193
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.92 E-value=0.0017 Score=64.27 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=26.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
+.+.|+|++|+||||+|+.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5789999999999999999999776654334444
No 194
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.92 E-value=0.022 Score=64.15 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=79.4
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccC--CHHHHHHHHHHHHhhhccCcCCCCchHHHHHH
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERG--GLVYLRERLYSEILEETLKIRTPSVPKCIKER 339 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~--~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 339 (1223)
-.+.++|||++|.|||.+|++++++....| +.....+..... .-..+.++++..... .. +
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~~------------~a--~ 208 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAAD------------II--K 208 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHHH------------Hh--h
Confidence 468999999999999999999999875443 222211111110 112222332221100 00 0
Q ss_pred HhcCeEEEEecCCCCH------------HHH--HHHhcCCC----------C----CCCCCEEEEEeCChhhhhhc----
Q 000922 340 LQQMKVFVVLDDVNKP------------EQL--DYLAGGLD----------R----FGLGSRVVVTSRDRQVFDKC---- 387 (1223)
Q Consensus 340 L~~kr~LlVLDdv~~~------------~~~--~~l~~~~~----------~----~~~gsrIIiTTR~~~v~~~~---- 387 (1223)
-++++++|++|+++.. .+. ..|+...+ | ..++-.||+||.+...+...
T Consensus 209 ~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRp 288 (413)
T PLN00020 209 KKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRD 288 (413)
T ss_pred ccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCC
Confidence 1467899999998631 111 22332111 1 23456678888776543321
Q ss_pred -CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCch
Q 000922 388 -RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 388 -~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 437 (1223)
..+..| ...+.++-.+++..+.-+.+.+. .-..++++...|=|+
T Consensus 289 GRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~----~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 289 GRMEKFY--WAPTREDRIGVVHGIFRDDGVSR----EDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCcee--CCCCHHHHHHHHHHHhccCCCCH----HHHHHHHHcCCCCCc
Confidence 123333 34566777777776543332221 333456666666554
No 195
>PRK09183 transposase/IS protein; Provisional
Probab=96.83 E-value=0.002 Score=71.22 Aligned_cols=35 Identities=26% Similarity=0.167 Sum_probs=25.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
...+.|+|++|+|||+||.++.+....+-..+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34678999999999999999988654433333444
No 196
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0082 Score=65.07 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=27.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHH----hhccCcceee
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQI----SNDFEGRCFM 297 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~F~~~~~~ 297 (1223)
-|+|.++|++|.|||+|++++++++ ..+|.....+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 5899999999999999999999954 4445544444
No 197
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.80 E-value=0.012 Score=75.60 Aligned_cols=172 Identities=15% Similarity=0.226 Sum_probs=94.4
Q ss_pred CCCceehhhHHHHHHHhhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccC
Q 000922 239 FEGLVGIYSRIEQIKSLLCV-----------GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERG 307 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 307 (1223)
..++.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .....
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi----~v~~~------ 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI----AVRGP------ 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE----EEehH------
Confidence 35678888887777766532 1123456889999999999999999997654331 11110
Q ss_pred CHHHHHHHHHHHHhhhccCcCCCCc-hHHHHHHHhcCeEEEEecCCCCHH--------------HHHHHhcCCCCC--CC
Q 000922 308 GLVYLRERLYSEILEETLKIRTPSV-PKCIKERLQQMKVFVVLDDVNKPE--------------QLDYLAGGLDRF--GL 370 (1223)
Q Consensus 308 ~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~--------------~~~~l~~~~~~~--~~ 370 (1223)
.++....++ .+.. ...+...-+..+.+|++|+++... ....++..++.. ..
T Consensus 522 -------~l~~~~vGe-----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 -------EILSKWVGE-----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred -------HHhhcccCc-----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 111110000 0001 112222224567899999986421 123343333321 23
Q ss_pred CCEEEEEeCChhhhhh-----cCCCceEEecCCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCCCc
Q 000922 371 GSRVVVTSRDRQVFDK-----CRVDKIYEVEGLNQNEALEHFSNYAFRQNI-CPKDFLVLSERIVFYANGNP 436 (1223)
Q Consensus 371 gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlP 436 (1223)
+--||.||...+.+.. -..+..+.++..+.++..++|..+.-+... ...++ ..+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 3445666655443321 134678999999999999999876533221 11222 44555566543
No 198
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.80 E-value=0.012 Score=65.47 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHHh
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
-|.++|.+|+|||++|++++....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999998553
No 199
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.79 E-value=0.25 Score=57.02 Aligned_cols=102 Identities=13% Similarity=0.005 Sum_probs=65.4
Q ss_pred CeEEEEecCCCCHH-----------HHHHHhcCCCCCCCCCEEEEEeCChhhhh----hc--CCCceEEecCCCHHHHHH
Q 000922 343 MKVFVVLDDVNKPE-----------QLDYLAGGLDRFGLGSRVVVTSRDRQVFD----KC--RVDKIYEVEGLNQNEALE 405 (1223)
Q Consensus 343 kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~gsrIIiTTR~~~v~~----~~--~~~~~~~l~~L~~~ea~~ 405 (1223)
+|=+||+|+..... +|.+.+-. .+=.+||++|-+..... .+ .+.+.+.+...+.+-|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 36789999984421 23332222 34568999998854333 33 345688999999999999
Q ss_pred HHHHhhhcCCCC-------------C-----hhHHHHHHHHHHHhCCCchHHHHHHhhhcc
Q 000922 406 HFSNYAFRQNIC-------------P-----KDFLVLSERIVFYANGNPLALKVLGSFLQR 448 (1223)
Q Consensus 406 Lf~~~af~~~~~-------------~-----~~~~~l~~~i~~~~~GlPLal~~lg~~L~~ 448 (1223)
+...+.-..... . .....-....++.+||==.=|..+++.++.
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 999887432110 0 123333456677788888888888887763
No 200
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.71 E-value=0.00063 Score=71.51 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=99.2
Q ss_pred cccCCcccEEeecCCcCcccc----hhhhcccccceeeecCCCCcc----ccccc-------cccCCCCcEEEccCCCCC
Q 000922 770 ICKLKSLHLLCLYNCSNFEIF----PEILEKMECLEYIDLESTAVK----ELPSS-------VEQLKGLRELILEDCSEL 834 (1223)
Q Consensus 770 i~~L~~L~~L~L~~c~~~~~~----p~~l~~l~~L~~L~L~~n~l~----~lp~~-------i~~l~~L~~L~L~~~~~l 834 (1223)
+..+..+..++||||.+.+.- ...+.+-.+|+..+++.-... ++|++ +-.+++|+..+||+|...
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 334666777777777665432 333444556666665542221 23322 334455555555555444
Q ss_pred CCCccccCCCCCCceeecCCcccccCCccccccccccEEEccCCCCCCCCc--------------cccCCCCCCEEEcCC
Q 000922 835 SKLPENLGNLKSLKRLFAKRSAISKLPSSIAYLDEVIELSFHGCRGLVLPP--------------ILSGLSSLTKLDLSD 900 (1223)
Q Consensus 835 ~~lp~~l~~l~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~~~~~~~p~--------------~~~~l~~L~~L~L~~ 900 (1223)
...|+.++ ..+++-+.|.+|.+++|....+.. -..+-|.|+......
T Consensus 106 ~~~~e~L~-------------------d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 106 SEFPEELG-------------------DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred cccchHHH-------------------HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 43333211 123344455555555555332211 123457788999988
Q ss_pred CCCCCCchh-----hcCCCCCcEEeCCCCCCcc------cchhhcCCCCCCEEeccCCCCCC--------CCCCccCCCc
Q 000922 901 CDVMEIPQD-----IGRASSLEILDISGNDFDS------LPASIKQLSRLRELYLSNCSMLQ--------SLPELPLRVK 961 (1223)
Q Consensus 901 ~~l~~lp~~-----l~~l~~L~~L~Ls~n~l~~------lp~~l~~l~~L~~L~L~~~~~l~--------~lp~l~~~L~ 961 (1223)
|.+...|.. +..-..|+.+.+..|.|.. +-..+..+.+|+.|+|.+|.... .+|..+ .|+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lr 245 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLR 245 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhh
Confidence 888765543 3333689999999998762 11245678899999999996542 122222 366
Q ss_pred EEeccCC
Q 000922 962 LLDASNC 968 (1223)
Q Consensus 962 ~L~~~~c 968 (1223)
.|.+.+|
T Consensus 246 EL~lnDC 252 (388)
T COG5238 246 ELRLNDC 252 (388)
T ss_pred hccccch
Confidence 6777666
No 201
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.71 E-value=0.0023 Score=64.90 Aligned_cols=81 Identities=23% Similarity=0.284 Sum_probs=47.2
Q ss_pred CccceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecCCCCcccccc--ccccCCCCcEEE
Q 000922 750 TKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPS--SVEQLKGLRELI 827 (1223)
Q Consensus 750 ~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~ 827 (1223)
.....+||++|. +..++. +..++.|.+|.|.+|.++..-|..-.-+++|..|.|.+|+|.++-. .+..++.|++|.
T Consensus 42 d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345666777643 333333 4556777777777776666666655566667777777777665432 234445555555
Q ss_pred ccCCC
Q 000922 828 LEDCS 832 (1223)
Q Consensus 828 L~~~~ 832 (1223)
+-+|.
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 55443
No 202
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.71 E-value=0.043 Score=64.82 Aligned_cols=87 Identities=26% Similarity=0.277 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHhhccCCCCCCCCCCceehhhHH----HHHHHhhhcCC-----
Q 000922 190 KVQKWRVVLTEASNLSGWDSMNIRPEAKLVDEIIEDILKKLKDKSFSSDFEGLVGIYSRI----EQIKSLLCVGL----- 260 (1223)
Q Consensus 190 ~v~~w~~aL~~~a~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~----~~l~~~L~~~~----- 260 (1223)
.++.++.||-++ .-..++++++++.+.++......+ ..+-.++..+ ++|.+.+....
T Consensus 26 ~l~ei~~aLl~a-----------dV~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~ 91 (437)
T PRK00771 26 VVKDIQRALLQA-----------DVNVKLVKELSKSIKERALEEEPP---KGLTPREHVIKIVYEELVKLLGEETEPLVL 91 (437)
T ss_pred HHHHHHHHHHHC-----------CCCHHHHHHHHHHHHHHHhccccc---ccCCcHHHHHHHHHHHHHHHhCCCcccccc
Confidence 455566666554 233456666676666554111111 1122222222 34444443221
Q ss_pred -CCeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 261 -PDFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 261 -~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
....+|.++|.+|+||||+|..++..++.+
T Consensus 92 ~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 92 PLKPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 246799999999999999999999877654
No 203
>PRK06526 transposase; Provisional
Probab=96.70 E-value=0.0023 Score=70.19 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=26.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCccee
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCF 296 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 296 (1223)
.+-+.++|++|+|||+||.++.+....+-..+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 4568999999999999999999876544333334
No 204
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.64 E-value=0.065 Score=68.67 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=64.4
Q ss_pred CCCceehhhHHHHHHHhhhcC------CC-CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHH
Q 000922 239 FEGLVGIYSRIEQIKSLLCVG------LP-DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVY 311 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~ 311 (1223)
...++|-+..++.+...+... .. -..++.++|++|+|||+||+.++..+... .+.+ +..+....+..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~---~~~~-d~se~~~~~~~-- 526 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH---LERF-DMSEYMEKHTV-- 526 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC---eEEE-eCchhhhcccH--
Confidence 346889999998888776531 11 23468899999999999999999876322 1222 22222222211
Q ss_pred HHHHHHHHHhhhccCcCCCCchHHHHHHHhcCe-EEEEecCCCCH--HHHHHHhcCC
Q 000922 312 LRERLYSEILEETLKIRTPSVPKCIKERLQQMK-VFVVLDDVNKP--EQLDYLAGGL 365 (1223)
Q Consensus 312 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~~ 365 (1223)
..+.+...+....+....+.+.++.++ -+++||+++.. +..+.|...+
T Consensus 527 ------~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 527 ------SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred ------HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence 122222221111112334455555444 59999999763 3344454433
No 205
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.64 E-value=0.0023 Score=66.32 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=25.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
..-+.++|.+|+|||.||.++.+....+=..+.|+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe
Confidence 35689999999999999999998765543345555
No 206
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.63 E-value=0.019 Score=74.29 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=64.7
Q ss_pred CCCceehhhHHHHHHHhhhcC------CC-CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHH
Q 000922 239 FEGLVGIYSRIEQIKSLLCVG------LP-DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVY 311 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~ 311 (1223)
...++|-+..++.+...+... ++ ...++.++|+.|+|||++|+++++.+...-...+.+ +..+....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~i-d~se~~~~----- 640 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRI-DMSEFMEK----- 640 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEE-EhHHhhhh-----
Confidence 346899999998888776531 11 135788999999999999999998664333323333 22221111
Q ss_pred HHHHHHHHHhhhccCcCCCCchHHHHHHHhcC-eEEEEecCCCC--HHHHHHHhcC
Q 000922 312 LRERLYSEILEETLKIRTPSVPKCIKERLQQM-KVFVVLDDVNK--PEQLDYLAGG 364 (1223)
Q Consensus 312 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~--~~~~~~l~~~ 364 (1223)
.....+.+...+....+....+.+.++.+ .-+|+||+++. .+.+..+...
T Consensus 641 ---~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~i 693 (857)
T PRK10865 641 ---HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQV 693 (857)
T ss_pred ---hhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHH
Confidence 11222332222211111122344444433 36899999974 4445555443
No 207
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.054 Score=65.40 Aligned_cols=157 Identities=21% Similarity=0.232 Sum_probs=91.0
Q ss_pred CCCceehhhHHHHHHHhhhcC----CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHH
Q 000922 239 FEGLVGIYSRIEQIKSLLCVG----LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRE 314 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~ 314 (1223)
..+.+|.+.-.++|.+.|... .-.-.+++++|++|+|||.|++.++......|-. +-+--+|..+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGGvrDEA---------- 390 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGGVRDEA---------- 390 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCccccHH----------
Confidence 346789999999998888532 2334799999999999999999999988777652 2222222221
Q ss_pred HHHHHHhhhccC-cCCCCchHHHHHH---HhcCeEEEEecCCCCHHH------HHHHhcCCCCCC-------------CC
Q 000922 315 RLYSEILEETLK-IRTPSVPKCIKER---LQQMKVFVVLDDVNKPEQ------LDYLAGGLDRFG-------------LG 371 (1223)
Q Consensus 315 ~ll~~l~~~~~~-~~~~~~~~~l~~~---L~~kr~LlVLDdv~~~~~------~~~l~~~~~~~~-------------~g 371 (1223)
++.++... +.. ....+-+. .+.+.=+++||.++.... -.+|+..++.-. -=
T Consensus 391 ----EIRGHRRTYIGa--mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 391 ----EIRGHRRTYIGA--MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ----Hhcccccccccc--CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 12221111 111 12222222 235667899999876421 222222221100 12
Q ss_pred CEEE-EEeCCh-h-h-hhhcCCCceEEecCCCHHHHHHHHHHhhh
Q 000922 372 SRVV-VTSRDR-Q-V-FDKCRVDKIYEVEGLNQNEALEHFSNYAF 412 (1223)
Q Consensus 372 srII-iTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 412 (1223)
|.|+ |||-+. + + ...+...+++++.+-+++|-+++-.++..
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 4444 444432 1 1 12233447999999999999888887753
No 208
>PRK06921 hypothetical protein; Provisional
Probab=96.61 E-value=0.0058 Score=67.73 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=29.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhc-cCcceeee
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISND-FEGRCFMA 298 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 298 (1223)
...+.++|.+|+|||+||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987765 44456664
No 209
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.037 Score=62.64 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=63.5
Q ss_pred cCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCC
Q 000922 342 QMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD-RQVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNIC 417 (1223)
Q Consensus 342 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 417 (1223)
+++=++|+|+++.. ....+|+..+....+++.+|++|.+ ..++... .....+.+..++.+++.+.+.... ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC
Confidence 45568899999875 3466676666665678877777775 3444332 234678999999999998886531 11
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHHH
Q 000922 418 PKDFLVLSERIVFYANGNPLALKVLG 443 (1223)
Q Consensus 418 ~~~~~~l~~~i~~~~~GlPLal~~lg 443 (1223)
...+..++..++|.|+....+.
T Consensus 188 ----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1235678999999998654443
No 210
>PRK08118 topology modulation protein; Reviewed
Probab=96.60 E-value=0.0039 Score=64.00 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=26.2
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhh---ccCccee
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISN---DFEGRCF 296 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~---~F~~~~~ 296 (1223)
+.|.|+|++|+||||||+.+++...- +|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 35889999999999999999997543 3565554
No 211
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.60 E-value=0.017 Score=60.75 Aligned_cols=172 Identities=19% Similarity=0.191 Sum_probs=96.2
Q ss_pred CCCceehhhHHHH---HHHhhhc----CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHH
Q 000922 239 FEGLVGIYSRIEQ---IKSLLCV----GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVY 311 (1223)
Q Consensus 239 ~~~~vGr~~~~~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~ 311 (1223)
.++.||-+....+ |.+.|.. +....+-|..+|++|.|||.+|+++++..+--|- ...
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l----~vk------------ 183 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL----LVK------------ 183 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE----Eec------------
Confidence 3566776654432 3444432 2345789999999999999999999996543221 110
Q ss_pred HHHHHHHHHhhhccCcCCCCchHHHHHH-HhcCeEEEEecCCCCHH--------------HHHHHhcCCCC--CCCCCEE
Q 000922 312 LRERLYSEILEETLKIRTPSVPKCIKER-LQQMKVFVVLDDVNKPE--------------QLDYLAGGLDR--FGLGSRV 374 (1223)
Q Consensus 312 l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~--------------~~~~l~~~~~~--~~~gsrI 374 (1223)
..+++ ++..+... ..+..+-++ -+.-++.+.+|.++... ...+|+..++. .+.|-.-
T Consensus 184 -at~li----GehVGdga-r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 184 -ATELI----GEHVGDGA-RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred -hHHHH----HHHhhhHH-HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 01111 11111110 012222222 23568999999876532 24555554443 2446556
Q ss_pred EEEeCChhhhhhc---CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC
Q 000922 375 VVTSRDRQVFDKC---RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGN 435 (1223)
Q Consensus 375 IiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 435 (1223)
|-.|....++... ....-++....+++|-.+++..++-.-..+-+. -.+.++++.+|.
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~ 318 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGM 318 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCC
Confidence 6666666555432 234567888889999999999988443322211 134556666654
No 212
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.57 E-value=0.059 Score=69.41 Aligned_cols=51 Identities=27% Similarity=0.399 Sum_probs=39.2
Q ss_pred CceehhhHHHHHHHhhhc----CCCCeEEEEEEccCCCchHHHHHHHHHHHhhcc
Q 000922 241 GLVGIYSRIEQIKSLLCV----GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDF 291 (1223)
Q Consensus 241 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 291 (1223)
+++|.+...+++.+++.. +.....++.++|++|+|||++|+.+++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 578988888888776532 222345899999999999999999999875544
No 213
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.56 E-value=0.062 Score=57.12 Aligned_cols=178 Identities=15% Similarity=0.107 Sum_probs=99.3
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCc-hHHHHH
Q 000922 260 LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSV-PKCIKE 338 (1223)
Q Consensus 260 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~ 338 (1223)
.++-+++.|+|.-|.|||++++++....-+.=-..+.+. ....+...+...+..++..+ +...... ...+.+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~ 120 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDR 120 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHH
Confidence 345679999999999999999966554432222222332 22334556666666666541 1111111 222222
Q ss_pred HH-----hcCe-EEEEecCCCCH--HHHHHHhc---CCCCCCCCCEEEEEeCCh-------hhhhhc-CCCce-EEecCC
Q 000922 339 RL-----QQMK-VFVVLDDVNKP--EQLDYLAG---GLDRFGLGSRVVVTSRDR-------QVFDKC-RVDKI-YEVEGL 398 (1223)
Q Consensus 339 ~L-----~~kr-~LlVLDdv~~~--~~~~~l~~---~~~~~~~gsrIIiTTR~~-------~v~~~~-~~~~~-~~l~~L 398 (1223)
.| ++++ +.+++||..+. ++++.+.- .-..+..-=+|+..-..+ .+.... ....+ |++.++
T Consensus 121 ~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 121 ELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred HHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 22 4677 99999998653 33444332 211111112233332221 111111 11124 999999
Q ss_pred CHHHHHHHHHHhhhcCCCCChhH-HHHHHHHHHHhCCCchHHHHHHh
Q 000922 399 NQNEALEHFSNYAFRQNICPKDF-LVLSERIVFYANGNPLALKVLGS 444 (1223)
Q Consensus 399 ~~~ea~~Lf~~~af~~~~~~~~~-~~l~~~i~~~~~GlPLal~~lg~ 444 (1223)
+.++...++..+..+...+.+-+ .+....|.....|.|.++..++.
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999999988876554433333 24567788888999998887664
No 214
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.54 E-value=0.0041 Score=72.35 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=41.2
Q ss_pred CCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhh--ccCcceee
Q 000922 240 EGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN--DFEGRCFM 297 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~ 297 (1223)
.++++.+..++.+...|.. .+.|.++|++|+|||++|+++++.+.. .|+.+.|+
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V 230 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV 230 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE
Confidence 4577888888998888853 346888999999999999999997643 34444444
No 215
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.46 E-value=0.092 Score=67.06 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHHHhhccCCCCCCC-----------CCCceehhhHHHHHHHhhhc----CCCCeEEEEEEccCCCchH
Q 000922 213 RPEAKLVDEIIEDILKKLKDKSFSSD-----------FEGLVGIYSRIEQIKSLLCV----GLPDFQIIGIWGMGGIGKT 277 (1223)
Q Consensus 213 ~~e~~~i~~i~~~v~~~l~~~~~~~~-----------~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKT 277 (1223)
..|+.+++.-++-+.. +++.....+ ..+.+|.+...++|.++|.. +.....++.++|++|+|||
T Consensus 285 ~~e~~~~~~yl~~~~~-~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKT 363 (784)
T PRK10787 285 SAEATVVRGYIDWMVQ-VPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKT 363 (784)
T ss_pred CchHHHHHHHHHHHHh-CCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHH
Confidence 4677777766666543 323222211 23589999988889887763 1223468999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 000922 278 TIAGAIFNQISNDF 291 (1223)
Q Consensus 278 tLA~~v~~~~~~~F 291 (1223)
|+|+.++......|
T Consensus 364 tl~~~ia~~l~~~~ 377 (784)
T PRK10787 364 SLGQSIAKATGRKY 377 (784)
T ss_pred HHHHHHHHHhCCCE
Confidence 99999998765444
No 216
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.024 Score=67.69 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=85.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhh-hccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREE-SERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQ 341 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~-~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 341 (1223)
..-|.|.|..|+|||+||+++++.+... ..+++..+.+. .....+..+|+.+ ...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFL----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHH----------------HHHHHHHHh
Confidence 4568899999999999999999987643 34444433332 2222344554443 233445567
Q ss_pred cCeEEEEecCCCCHHH------------HHHHhcCC----CC-CCCCCE--EEEEeCChhhhh-----hcCCCceEEecC
Q 000922 342 QMKVFVVLDDVNKPEQ------------LDYLAGGL----DR-FGLGSR--VVVTSRDRQVFD-----KCRVDKIYEVEG 397 (1223)
Q Consensus 342 ~kr~LlVLDdv~~~~~------------~~~l~~~~----~~-~~~gsr--IIiTTR~~~v~~-----~~~~~~~~~l~~ 397 (1223)
..+-+|||||++-... .+.+...+ .. ...+.+ +|-|.....-.. ..-...+..++.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 7899999999964211 11111111 11 122444 344444322211 112345778888
Q ss_pred CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-CchHHHHH
Q 000922 398 LNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANG-NPLALKVL 442 (1223)
Q Consensus 398 L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~G-lPLal~~l 442 (1223)
+..++-.++++... ..+.......+ ..-+..+|+| .|.-++++
T Consensus 573 p~~~~R~~IL~~~~-s~~~~~~~~~d-Ld~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIF-SKNLSDITMDD-LDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHH-HhhhhhhhhHH-HHHHHHhcCCccchhHHHH
Confidence 98888888777654 22221111112 2226666766 34444443
No 217
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.42 E-value=0.017 Score=74.97 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=65.7
Q ss_pred CCCceehhhHHHHHHHhhhcCC------C-CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHH
Q 000922 239 FEGLVGIYSRIEQIKSLLCVGL------P-DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVY 311 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~~------~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~ 311 (1223)
...++|.+..++.+...+.... . -..++.++|++|+|||++|+.+.......-...+.+ +..+.....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~-d~s~~~~~~---- 638 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI-DMSEYMEKH---- 638 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE-echhhcccc----
Confidence 3568999999999988775421 1 145788999999999999999998764433323333 222211111
Q ss_pred HHHHHHHHHhhhccCcCCCCchHHHHHHHhcCe-EEEEecCCCCH--HHHHHHhcC
Q 000922 312 LRERLYSEILEETLKIRTPSVPKCIKERLQQMK-VFVVLDDVNKP--EQLDYLAGG 364 (1223)
Q Consensus 312 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~ 364 (1223)
....+.+...+....+....+.+.++.++ -+|+||+++.. +.+..|...
T Consensus 639 ----~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~ 690 (852)
T TIGR03346 639 ----SVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQV 690 (852)
T ss_pred ----hHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHH
Confidence 11222222222111111233444444443 48999999764 344544443
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.072 Score=60.96 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=25.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
..++|+++|.+|+||||++.+++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45899999999999999999999876544
No 219
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.043 Score=63.39 Aligned_cols=130 Identities=19% Similarity=0.227 Sum_probs=76.9
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL 340 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 340 (1223)
.....|.+.|++|.|||+||..++.. ..|+.+-.+ .. ...-++.+-.+... ......+.-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKii---Sp-e~miG~sEsaKc~~--------------i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKII---SP-EDMIGLSESAKCAH--------------IKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEe---Ch-HHccCccHHHHHHH--------------HHHHHHHhh
Confidence 35678889999999999999998864 567743222 11 11111111111000 022233344
Q ss_pred hcCeEEEEecCCCCHHHH------------HHHhcCCCCC-CCCCE--EEEEeCChhhhhhcCC----CceEEecCCCH-
Q 000922 341 QQMKVFVVLDDVNKPEQL------------DYLAGGLDRF-GLGSR--VVVTSRDRQVFDKCRV----DKIYEVEGLNQ- 400 (1223)
Q Consensus 341 ~~kr~LlVLDdv~~~~~~------------~~l~~~~~~~-~~gsr--IIiTTR~~~v~~~~~~----~~~~~l~~L~~- 400 (1223)
+..=-.||+||++..-+| ++|+-.+... ..|-| |+-||....++..|+. ...|+|+.++.
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 566678999999775443 3333222222 23444 5557777888888864 45889999988
Q ss_pred HHHHHHHHHh
Q 000922 401 NEALEHFSNY 410 (1223)
Q Consensus 401 ~ea~~Lf~~~ 410 (1223)
++..+.++..
T Consensus 676 ~~~~~vl~~~ 685 (744)
T KOG0741|consen 676 EQLLEVLEEL 685 (744)
T ss_pred HHHHHHHHHc
Confidence 6777777654
No 220
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.28 E-value=0.0037 Score=67.06 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=28.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
-.++|.|..|.|||||++.+......+|..+..+
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 3577999999999999999999999999655544
No 221
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.27 E-value=0.021 Score=73.59 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=40.1
Q ss_pred CCCceehhhHHHHHHHhhhcC-------CCCeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 239 FEGLVGIYSRIEQIKSLLCVG-------LPDFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
...++|-+..++.+.+.+... .....++.++|++|+|||.+|++++..+.+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 356899999999988776421 1224578999999999999999999876443
No 222
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.13 Score=58.34 Aligned_cols=91 Identities=10% Similarity=0.138 Sum_probs=63.0
Q ss_pred cCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCC
Q 000922 342 QMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDR-QVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNIC 417 (1223)
Q Consensus 342 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 417 (1223)
+++=.+|+|+++.. ....+|+..+....+++.+|++|.+. .++... .....+.+.+++.+++.+.+.... ..
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~~ 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----IT 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----Cc
Confidence 34457888999865 45777777777667778877777664 444432 334689999999999999886542 11
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 000922 418 PKDFLVLSERIVFYANGNPLALKVL 442 (1223)
Q Consensus 418 ~~~~~~l~~~i~~~~~GlPLal~~l 442 (1223)
.+..++..++|.|+....+
T Consensus 183 ------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 ------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ------hHHHHHHHcCCCHHHHHHH
Confidence 1356788999999865544
No 223
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.03 Score=69.45 Aligned_cols=118 Identities=18% Similarity=0.240 Sum_probs=75.9
Q ss_pred CCceehhhHHHHHHHhhhcC-------CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHH
Q 000922 240 EGLVGIYSRIEQIKSLLCVG-------LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
..++|-+..++.+.+.+... .....+....|+.|+|||.||++++..+-+.=+..+-+ ++++..+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~E------- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYME------- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHH-------
Confidence 46899999999988877532 12356788899999999999999999764432333333 2223222
Q ss_pred HHHHHHHHhhhccCcCCCCchHHHHHHHhcCeE-EEEecCCCC--HHHHHHHhcCCC
Q 000922 313 RERLYSEILEETLKIRTPSVPKCIKERLQQMKV-FVVLDDVNK--PEQLDYLAGGLD 366 (1223)
Q Consensus 313 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~--~~~~~~l~~~~~ 366 (1223)
+.-.+.+.+...+.-.-+.-..+-+..+.++| +|.||+|+. ++..+-|+..++
T Consensus 563 -kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 563 -KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred -HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 23345555555543322334566777788888 777899975 455565655444
No 224
>PRK14974 cell division protein FtsY; Provisional
Probab=96.26 E-value=0.026 Score=64.25 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=25.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
..++|+++|++|+||||++.+++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999998876654
No 225
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.26 E-value=0.035 Score=71.94 Aligned_cols=118 Identities=13% Similarity=0.158 Sum_probs=66.7
Q ss_pred CCCceehhhHHHHHHHhhhcC------CC-CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHH
Q 000922 239 FEGLVGIYSRIEQIKSLLCVG------LP-DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVY 311 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~ 311 (1223)
...++|-+..++.+...+... .. ....+.++|+.|+|||+||+.+++.+...-...+.+ +..+....+....
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~~~ 586 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTVSK 586 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccHHH
Confidence 356899999999988776421 11 234677999999999999999998764332222222 2222222222111
Q ss_pred HHHHHHHHHhhhccCcCCCCchHHHHHHHhcCe-EEEEecCCCCH--HHHHHHhcCC
Q 000922 312 LRERLYSEILEETLKIRTPSVPKCIKERLQQMK-VFVVLDDVNKP--EQLDYLAGGL 365 (1223)
Q Consensus 312 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~~ 365 (1223)
+.+...+....+....+.+.++.++ -+++||+++.. +.++.|...+
T Consensus 587 --------l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~l 635 (821)
T CHL00095 587 --------LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQIL 635 (821)
T ss_pred --------hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHh
Confidence 2222111111112334556666665 58889999763 3455555443
No 226
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.22 E-value=0.014 Score=64.05 Aligned_cols=93 Identities=19% Similarity=0.236 Sum_probs=56.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhc-c---CcCCCCc------
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEET-L---KIRTPSV------ 332 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~-~---~~~~~~~------ 332 (1223)
-+.++|.|.+|.||||||+.++++++.+|+..+++.-+.+... .+.++.+.+...-.... . ...+...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~--Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR--EGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH--HHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3578999999999999999999999988888888766544322 23344444432110000 0 0111110
Q ss_pred ---hHHHHHHH--h-cCeEEEEecCCCCHHH
Q 000922 333 ---PKCIKERL--Q-QMKVFVVLDDVNKPEQ 357 (1223)
Q Consensus 333 ---~~~l~~~L--~-~kr~LlVLDdv~~~~~ 357 (1223)
.-.+.+++ + ++.+|+|+||+....+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 11233444 3 8899999999966443
No 227
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.20 E-value=0.01 Score=62.24 Aligned_cols=117 Identities=18% Similarity=0.284 Sum_probs=52.4
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH-H-hhccCcceeeeechhhhccCCH--HHHHHHH---HHHHhhhccCcCCCCchH
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQ-I-SNDFEGRCFMANVREESERGGL--VYLRERL---YSEILEETLKIRTPSVPK 334 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~~~~~~~~~~~~~l--~~l~~~l---l~~l~~~~~~~~~~~~~~ 334 (1223)
+..+|.+.|++|.|||.||.+.+-+ + .++|+..++....-+..+.-+. -.+.+++ +..+...-...-.....+
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~ 97 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLE 97 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHH
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHH
Confidence 3458999999999999999998863 2 4677777766443221111110 0111111 000000000100111122
Q ss_pred HHHH----------HHhcC---eEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh
Q 000922 335 CIKE----------RLQQM---KVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDR 381 (1223)
Q Consensus 335 ~l~~----------~L~~k---r~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~ 381 (1223)
.+.+ .++++ ..+||+|++.+. .++..+... .+.||+||++--..
T Consensus 98 ~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 98 ELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 2211 12332 568999999764 567776544 58999999987544
No 228
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.20 E-value=0.011 Score=66.98 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=41.0
Q ss_pred CCceehhhHHHHHHHhhhcC----CCCeEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 240 EGLVGIYSRIEQIKSLLCVG----LPDFQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
++++|+++.++++.+++... ....++++++|++|.||||||+++.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 37999999999998887542 23468999999999999999999998653
No 229
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.19 E-value=0.011 Score=62.56 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=62.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcC
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQM 343 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 343 (1223)
.+|.|.|+.|.||||++..+...+.......++...- ........ ...+. .....+.......+.++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~---~~E~~~~~-~~~~i---~q~~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED---PIEFVHES-KRSLI---NQREVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC---CccccccC-cccee---eecccCCCccCHHHHHHHHhcCC
Confidence 4789999999999999999888776555544443211 10100000 00000 00000111111266778888878
Q ss_pred eEEEEecCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 000922 344 KVFVVLDDVNKPEQLDYLAGGLDRFGLGSRVVVTSRDRQV 383 (1223)
Q Consensus 344 r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v 383 (1223)
+=.+++|++.+.+.+....... ..|..++.|+-....
T Consensus 75 pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 8899999998887765544332 345566666654433
No 230
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.19 E-value=0.0042 Score=60.04 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.19 E-value=0.017 Score=65.77 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=28.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
.-+.++|.+|+|||.||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66999999999999999999998766544566663
No 232
>PRK07261 topology modulation protein; Provisional
Probab=96.18 E-value=0.016 Score=59.89 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998754
No 233
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.14 E-value=0.015 Score=65.98 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=25.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
...+++++|++|+||||++..++..++.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877654
No 234
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.11 E-value=0.0023 Score=67.89 Aligned_cols=103 Identities=29% Similarity=0.326 Sum_probs=65.9
Q ss_pred cccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCC---CCchhhcCCCCCcEEeCCCCCCcccc--hhhcCCCCCCEEe
Q 000922 869 EVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVM---EIPQDIGRASSLEILDISGNDFDSLP--ASIKQLSRLRELY 943 (1223)
Q Consensus 869 ~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~---~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~ 943 (1223)
.|+.|++.++...++. .+..+++|+.|.++.|... .++.-...+|+|++|+|++|.+..+. ..+..+.+|..|+
T Consensus 44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 3444444444433322 2446778899999988433 35555556699999999999877422 1356778888999
Q ss_pred ccCCCCCCCC------CCccCCCcEEeccCCcCcC
Q 000922 944 LSNCSMLQSL------PELPLRVKLLDASNCKQLQ 972 (1223)
Q Consensus 944 L~~~~~l~~l------p~l~~~L~~L~~~~c~~L~ 972 (1223)
+.+|.-.+.- -.+.++|++|+-.++..-+
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhccccccccCCcc
Confidence 9988765511 1355778888777765544
No 235
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.09 E-value=0.044 Score=63.04 Aligned_cols=158 Identities=12% Similarity=0.073 Sum_probs=85.9
Q ss_pred Ccee-hhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc--cCcceeeeechhhhccCCHHHHHHHHH
Q 000922 241 GLVG-IYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND--FEGRCFMANVREESERGGLVYLRERLY 317 (1223)
Q Consensus 241 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~l~~l~~~ll 317 (1223)
.++| -+..++.+...+..+ .-.+...++|+.|+||||+|+.+.+.+-.. ..... .+.-...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~-----------cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP-----------CGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC-----------CCcCHHHHHHh
Confidence 4556 455566677766433 234677899999999999999998864211 11000 00000000000
Q ss_pred HHHhhh------ccCcCCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hh
Q 000922 318 SEILEE------TLKIRTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDR-QV 383 (1223)
Q Consensus 318 ~~l~~~------~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v 383 (1223)
.....+ .......+....+.+.+ .+.+=++|+|+++.. +..+.|+..+....+++.+|++|.+. .+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 000000 00000000112222222 234556889998764 34667777776667788888887664 33
Q ss_pred hhh-cCCCceEEecCCCHHHHHHHHHHh
Q 000922 384 FDK-CRVDKIYEVEGLNQNEALEHFSNY 410 (1223)
Q Consensus 384 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 410 (1223)
... ......+++.+++.++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 332 223468999999999998888653
No 236
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.16 Score=62.66 Aligned_cols=178 Identities=16% Similarity=0.202 Sum_probs=101.6
Q ss_pred CCCCceehhhHHHHHHH---hhhcC-------CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccC
Q 000922 238 DFEGLVGIYSRIEQIKS---LLCVG-------LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERG 307 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~---~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 307 (1223)
...++.|.++..++|++ .|..+ ..-.+=|.++|++|.|||-||++++-.-.=- |+.... +
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-----F~svSG--S--- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSVSG--S--- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-----eeeech--H---
Confidence 45678898876666554 44322 1225668899999999999999999753211 221110 0
Q ss_pred CHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH-----------------HHHHHHhcCCCCCCC
Q 000922 308 GLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP-----------------EQLDYLAGGLDRFGL 370 (1223)
Q Consensus 308 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------------~~~~~l~~~~~~~~~ 370 (1223)
++...+. +.............-...+..|.+|+++.. ..+.+|+...+.+..
T Consensus 379 -------EFvE~~~----g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 -------EFVEMFV----GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred -------HHHHHhc----ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 0111000 000000011112222345677777776431 126666666666655
Q ss_pred CCEEEE--EeCChhhhhh-----cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchH
Q 000922 371 GSRVVV--TSRDRQVFDK-----CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 371 gsrIIi--TTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 438 (1223)
.+.||+ +|+..+++.. -..+..+.++..+.....++|..|+-..... .+..++++ ++...-|.+=|
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 543433 4544444332 2356788999999999999999998554433 34456666 88888887743
No 237
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.0065 Score=59.54 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=29.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhc-cCcc-eeeeech
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISND-FEGR-CFMANVR 301 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~-~~~~~~~ 301 (1223)
--|+|.||+|+||||+++.+.+.++.. |... +|...++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 468999999999999999999988776 6543 3333343
No 238
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.042 Score=63.37 Aligned_cols=139 Identities=16% Similarity=0.103 Sum_probs=78.5
Q ss_pred CceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccC---------------------cceeeee
Q 000922 241 GLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFE---------------------GRCFMAN 299 (1223)
Q Consensus 241 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~~~~~~ 299 (1223)
.++|-+..+.++..+..........+.++|++|+||||+|.++++.+-.... ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 3566677777777776544334446899999999999999999997653321 111111
Q ss_pred chhhhccCC---HHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCHH--HHHHHhcCCCCCCCCCEE
Q 000922 300 VREESERGG---LVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKPE--QLDYLAGGLDRFGLGSRV 374 (1223)
Q Consensus 300 ~~~~~~~~~---l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrI 374 (1223)
.+.... .....+++...... .. ..++.-++++|+++... ...++..........+++
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~----~~-----------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSE----SP-----------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhcc----CC-----------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 011111 11111111111100 00 02567789999998754 356666666666778888
Q ss_pred EEEeCCh-hhhhhc-CCCceEEecCC
Q 000922 375 VVTSRDR-QVFDKC-RVDKIYEVEGL 398 (1223)
Q Consensus 375 IiTTR~~-~v~~~~-~~~~~~~l~~L 398 (1223)
|++|.+. .+.... .....+++.+.
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCc
Confidence 8888743 333322 22345666653
No 239
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.00 E-value=0.066 Score=64.84 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=36.8
Q ss_pred HHHHHhcCeEEEEecC------CCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEecC
Q 000922 336 IKERLQQMKVFVVLDD------VNKPEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEVEG 397 (1223)
Q Consensus 336 l~~~L~~kr~LlVLDd------v~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~~ 397 (1223)
+...+-.++=++|||. ++..++++..+..+ +| .||+.|-|+...... +.+++.+.+
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~v-a~~i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRV-ATRIWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhh-cceEEEEcC
Confidence 3444567888999995 44445555555442 34 488888898888776 356777664
No 240
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.00 E-value=0.033 Score=61.96 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=25.9
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
...++|.++|++|+||||++..++..++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346899999999999999999999877655
No 241
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=95.99 E-value=0.0079 Score=60.65 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=55.1
Q ss_pred cEEEcCccccc-ccchHHHHHHHHhhC-CCcccccC-CCCC--CCCccHHHHHHHhhcceEEEEeccCc
Q 000922 67 DVFVSFRGEDT-RDNFTSHLVAALCRK-KIKTFIDE-QLDR--GDDISPALLDAIERSKISVIIFSENY 130 (1223)
Q Consensus 67 dvFis~~g~d~-~~~f~~~l~~~L~~~-gi~~f~d~-~~~~--g~~~~~~~~~ai~~s~~~ivv~S~~y 130 (1223)
-|||||+.+.- ...+|..|++.|++. |+.|.+|. +... +..+...+.++++++...|||+|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 39999987543 347899999999999 99999998 7644 77899999999999999999999654
No 242
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.98 E-value=0.051 Score=68.27 Aligned_cols=129 Identities=18% Similarity=0.205 Sum_probs=71.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcC
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQM 343 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 343 (1223)
+-|.++|++|.||||+|+.++.+....|- .+ .... +..... + .........+.......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~i-s~~~---------~~~~~~----g----~~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TI-SGSD---------FVEMFV----G----VGASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EE-ehHH---------hHHhhh----c----ccHHHHHHHHHHHHhcC
Confidence 34889999999999999999887644331 11 1100 000000 0 00000012222223456
Q ss_pred eEEEEecCCCCHH----------------HHHHHhcCCCCCC--CCCEEEEEeCChhhhhh-----cCCCceEEecCCCH
Q 000922 344 KVFVVLDDVNKPE----------------QLDYLAGGLDRFG--LGSRVVVTSRDRQVFDK-----CRVDKIYEVEGLNQ 400 (1223)
Q Consensus 344 r~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~ 400 (1223)
+.+|++|+++... .+..++..+..+. .+--||.||...+.+.. -..+..+.++..+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 7899999986641 1333433333222 34445557776554332 12457888999999
Q ss_pred HHHHHHHHHhhhc
Q 000922 401 NEALEHFSNYAFR 413 (1223)
Q Consensus 401 ~ea~~Lf~~~af~ 413 (1223)
++..+++..+.-.
T Consensus 325 ~~R~~Il~~~~~~ 337 (644)
T PRK10733 325 RGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHhhc
Confidence 9999998887643
No 243
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.96 E-value=0.16 Score=58.16 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=60.6
Q ss_pred cCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCC
Q 000922 342 QMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRD-RQVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNIC 417 (1223)
Q Consensus 342 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 417 (1223)
+++=++|+|+++.. .....|+..+....+++.+|++|.+ ..++.. ......+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 34457788999764 4577787777766778877766665 445443 2334689999999999999887652 11
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHH
Q 000922 418 PKDFLVLSERIVFYANGNPLALKV 441 (1223)
Q Consensus 418 ~~~~~~l~~~i~~~~~GlPLal~~ 441 (1223)
+ ...++..++|.|+....
T Consensus 207 -~-----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 207 -D-----ADALLAEAGGAPLAALA 224 (342)
T ss_pred -h-----HHHHHHHcCCCHHHHHH
Confidence 1 12357788999974433
No 244
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.11 Score=59.65 Aligned_cols=90 Identities=13% Similarity=0.040 Sum_probs=62.3
Q ss_pred cCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCC
Q 000922 342 QMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDR-QVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNIC 417 (1223)
Q Consensus 342 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 417 (1223)
+++=++|+|+++.. .....|+..+....+++.+|++|.+. .++.. ......+.+.+++.+++.+.+.... ..
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~---~~- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV---TM- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc---CC-
Confidence 45668889999865 45777777777667788877777764 45443 2234578999999999998886542 11
Q ss_pred ChhHHHHHHHHHHHhCCCchH
Q 000922 418 PKDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 418 ~~~~~~l~~~i~~~~~GlPLa 438 (1223)
+ .+.+..++..++|.|..
T Consensus 183 ~---~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 183 S---QDALLAALRLSAGAPGA 200 (334)
T ss_pred C---HHHHHHHHHHcCCCHHH
Confidence 1 13356789999999964
No 245
>PRK04132 replication factor C small subunit; Provisional
Probab=95.91 E-value=0.091 Score=66.65 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=90.2
Q ss_pred Ec--cCCCchHHHHHHHHHHHhh-ccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeE
Q 000922 269 WG--MGGIGKTTIAGAIFNQISN-DFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKV 345 (1223)
Q Consensus 269 ~G--~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~ 345 (1223)
.| +.++||||+|.++++++-+ .+...+.-.| .++..+...+. +++.+..... ... ..+.-
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN---ASd~rgid~IR-~iIk~~a~~~-~~~------------~~~~K 632 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELN---ASDERGINVIR-EKVKEFARTK-PIG------------GASFK 632 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe---CCCcccHHHHH-HHHHHHHhcC-CcC------------CCCCE
Confidence 36 7899999999999998633 2332222222 12223344333 2222221110 000 12457
Q ss_pred EEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCChhH
Q 000922 346 FVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDR-QVFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDF 421 (1223)
Q Consensus 346 LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~ 421 (1223)
++|+|+++.. .+..+|...+.......++|++|.+. .+.... .....+++++++.++-.+.+.+.+-..+..- .
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i--~ 710 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL--T 710 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--C
Confidence 9999999875 45677776666556677777776654 333222 2346899999999998888877664333211 1
Q ss_pred HHHHHHHHHHhCCCch
Q 000922 422 LVLSERIVFYANGNPL 437 (1223)
Q Consensus 422 ~~l~~~i~~~~~GlPL 437 (1223)
.+....|++.++|.+.
T Consensus 711 ~e~L~~Ia~~s~GDlR 726 (846)
T PRK04132 711 EEGLQAILYIAEGDMR 726 (846)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 3567889999999884
No 246
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.90 E-value=0.033 Score=57.87 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=31.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
..+|.+.|+.|.||||+|+.++.++..++...+++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 45899999999999999999999998888877776
No 247
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.90 E-value=0.022 Score=64.90 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=54.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhcc-CcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCc------hHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDF-EGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSV------PKCI 336 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~------~~~l 336 (1223)
..++|+|.+|.|||||++.+++.+..+. +..+++.-+.+ ......++.+.+...+.....+...... ...+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999876654 33333333322 2234566666666544432211111110 1111
Q ss_pred HHHH--hcCeEEEEecCCCCHHH
Q 000922 337 KERL--QQMKVFVVLDDVNKPEQ 357 (1223)
Q Consensus 337 ~~~L--~~kr~LlVLDdv~~~~~ 357 (1223)
.+++ ++++++||+|++....+
T Consensus 212 Ae~f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHHHHcCCCEEEEEeCcHHHHH
Confidence 2222 48899999999965443
No 248
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.90 E-value=0.065 Score=58.87 Aligned_cols=143 Identities=18% Similarity=0.130 Sum_probs=81.6
Q ss_pred CCCCceehhhHHHHHHHhhhcC--CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhh--ccCCHHHHH
Q 000922 238 DFEGLVGIYSRIEQIKSLLCVG--LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREES--ERGGLVYLR 313 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~--~~~~l~~l~ 313 (1223)
+...++|-.++.+++..++... -.+-..|.|+|+.|.|||+|.-....+ .+.|.-...+......- ++-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4467899999999998888542 133456789999999999998776655 33444343333222211 222344555
Q ss_pred HHHHHHHhhhccCcCCCCc-hHHHHHHHhc------CeEEEEecCCCCHH----H--HHHHhcCC-CCCCCCCEEEEEeC
Q 000922 314 ERLYSEILEETLKIRTPSV-PKCIKERLQQ------MKVFVVLDDVNKPE----Q--LDYLAGGL-DRFGLGSRVVVTSR 379 (1223)
Q Consensus 314 ~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~------kr~LlVLDdv~~~~----~--~~~l~~~~-~~~~~gsrIIiTTR 379 (1223)
+++..++........+... ...+-..|+. -++.+|+|.+|-.. | +-.+.... ....|=+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 5555554433222222222 5555555543 37999999886532 2 11222111 12356677788998
Q ss_pred Ch
Q 000922 380 DR 381 (1223)
Q Consensus 380 ~~ 381 (1223)
-.
T Consensus 181 ld 182 (408)
T KOG2228|consen 181 LD 182 (408)
T ss_pred cc
Confidence 53
No 249
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.90 E-value=0.22 Score=58.77 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
..++.++|.+|+||||+|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999999988764
No 250
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.89 E-value=0.11 Score=59.08 Aligned_cols=89 Identities=9% Similarity=0.056 Sum_probs=62.1
Q ss_pred cCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCC
Q 000922 342 QMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDR-QVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNIC 417 (1223)
Q Consensus 342 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 417 (1223)
+++=++|+|+++.. ....+|+..+....+++.+|++|.+. .++.. ......+.+.+++.++..+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~---~- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS---A- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc---c-
Confidence 45557789999875 44677777777667788888777764 44433 22346899999999999988877541 1
Q ss_pred ChhHHHHHHHHHHHhCCCch
Q 000922 418 PKDFLVLSERIVFYANGNPL 437 (1223)
Q Consensus 418 ~~~~~~l~~~i~~~~~GlPL 437 (1223)
.. ..+..++..++|.|+
T Consensus 182 ~~---~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 182 EI---SEILTALRINYGRPL 198 (325)
T ss_pred Ch---HHHHHHHHHcCCCHH
Confidence 11 124567888999996
No 251
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.87 E-value=0.052 Score=68.69 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=63.5
Q ss_pred CCceehhhHHHHHHHhhhcC-------CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHH
Q 000922 240 EGLVGIYSRIEQIKSLLCVG-------LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYL 312 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l 312 (1223)
..++|-+..++.|...+... ......+.++|++|+|||++|+.++..+...| +.+ +..+......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~---i~i-d~se~~~~~~---- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIEL---LRF-DMSEYMERHT---- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCc---EEe-echhhccccc----
Confidence 45899999999988877531 11245788999999999999999988763221 112 2222222111
Q ss_pred HHHHHHHHhhhccCcCCCCchHHHHHHHhcC-eEEEEecCCCCHH--HHHHHhc
Q 000922 313 RERLYSEILEETLKIRTPSVPKCIKERLQQM-KVFVVLDDVNKPE--QLDYLAG 363 (1223)
Q Consensus 313 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~--~~~~l~~ 363 (1223)
...+.+...+....+....+.+.++.+ .-+|+||+++... .++.|..
T Consensus 530 ----~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq 579 (758)
T PRK11034 530 ----VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQ 579 (758)
T ss_pred ----HHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHH
Confidence 223333222111111123344444444 4589999998753 3444443
No 252
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.12 Score=61.92 Aligned_cols=163 Identities=20% Similarity=0.265 Sum_probs=89.3
Q ss_pred CceehhhHHHHHHHhhh-----------cCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCH
Q 000922 241 GLVGIYSRIEQIKSLLC-----------VGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGL 309 (1223)
Q Consensus 241 ~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l 309 (1223)
++=|.++-..+|.+... .+-...+-|..+|+||.|||++|+++++.-.-.|-.+ ..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv------kg------- 501 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV------KG------- 501 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec------cC-------
Confidence 44456665566654332 1224467889999999999999999999876665432 00
Q ss_pred HHHHHHHHHHHhhhccCcCCCCc-hHHHHHHHhcCeEEEEecCCCCHH-------------HHHHHhcCCCCCCCCCEEE
Q 000922 310 VYLRERLYSEILEETLKIRTPSV-PKCIKERLQQMKVFVVLDDVNKPE-------------QLDYLAGGLDRFGLGSRVV 375 (1223)
Q Consensus 310 ~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gsrII 375 (1223)
.++++...++ .+.. ...+++.-+--+.+|.||.++... .+..|+..++.......|+
T Consensus 502 ----pEL~sk~vGe-----SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 502 ----PELFSKYVGE-----SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred ----HHHHHHhcCc-----hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 0111111110 0000 111122222345788888775432 1445555555444444444
Q ss_pred E---EeCChhhhhh-c---CCCceEEecCCCHHHHHHHHHHhhhcCCCCCh-hHHHHH
Q 000922 376 V---TSRDRQVFDK-C---RVDKIYEVEGLNQNEALEHFSNYAFRQNICPK-DFLVLS 425 (1223)
Q Consensus 376 i---TTR~~~v~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~-~~~~l~ 425 (1223)
| |-|...+-.. + ..+..+.++..+.+-..++|+.++-+....+. ++.+++
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 4 2333322222 2 35788999999999999999999855443322 444443
No 253
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.23 Score=57.71 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
..++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 254
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.81 E-value=0.038 Score=62.50 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=28.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
.+-+.++|..|+|||.||.++++.+..+-..+.|+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~ 190 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL 190 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 45788999999999999999999876554444555
No 255
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.81 E-value=0.23 Score=58.99 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
-+++.++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999988665
No 256
>PRK06696 uridine kinase; Validated
Probab=95.78 E-value=0.014 Score=63.22 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=34.1
Q ss_pred hhhHHHHHHHhhhc-CCCCeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 245 IYSRIEQIKSLLCV-GLPDFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 245 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
|++.+++|.+.+.. ......+|+|.|.+|.||||+|+++...+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44455555555432 34567899999999999999999999987544
No 257
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.12 Score=61.04 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=84.4
Q ss_pred CCCceehhhHHHHHHHhhhcC----------CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCC
Q 000922 239 FEGLVGIYSRIEQIKSLLCVG----------LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGG 308 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 308 (1223)
..++=|++..+.+|.+++..- -.-.|=|.++|++|.|||.||++++++..--|-.+ +.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~i---------sA--- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSI---------SA--- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEee---------cc---
Confidence 467889999999888776431 12356788999999999999999999764433211 10
Q ss_pred HHHHHHHHHHHHhhhccCcCCCCc-hHHHHHHHhcCeEEEEecCCCCHH------H-------HHHHhc---CCCCC-CC
Q 000922 309 LVYLRERLYSEILEETLKIRTPSV-PKCIKERLQQMKVFVVLDDVNKPE------Q-------LDYLAG---GLDRF-GL 370 (1223)
Q Consensus 309 l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~------~-------~~~l~~---~~~~~-~~ 370 (1223)
-.+.+.+.++ .+.. .+.+.+.-..-++++++|+++... | ...|+. .+... ..
T Consensus 257 -----peivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 257 -----PEIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred -----hhhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 0111111111 0001 222223334668999999996521 0 222322 22211 11
Q ss_pred CCEEEE---EeCChhhhhhc----CCCceEEecCCCHHHHHHHHHHhhh
Q 000922 371 GSRVVV---TSRDRQVFDKC----RVDKIYEVEGLNQNEALEHFSNYAF 412 (1223)
Q Consensus 371 gsrIIi---TTR~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~af 412 (1223)
|-.|+| |+|...+-..+ ..++-+.+.-.++..-.+++...+-
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh
Confidence 333333 45544433222 2356778887787777777766654
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.73 E-value=0.021 Score=58.14 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=27.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
++.|+|.+|.||||+|+.+......+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999997766545555653
No 259
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.72 E-value=0.031 Score=61.42 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=28.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
...-+.++|.+|+|||.||.++.+++...--.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 456789999999999999999999988433334444
No 260
>PRK07667 uridine kinase; Provisional
Probab=95.70 E-value=0.019 Score=60.56 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=33.1
Q ss_pred HHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 249 IEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 249 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
++.+...+........+|||.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345556665555667899999999999999999999977543
No 261
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.67 E-value=0.0027 Score=77.72 Aligned_cols=77 Identities=27% Similarity=0.405 Sum_probs=35.1
Q ss_pred ccCCCCCCEEEcCCCCCCCCc--hhhcCCCCCcEEeCCCCCCcccchhhcCCCCCCEEeccCCCCCCCCC--Cc---cCC
Q 000922 887 LSGLSSLTKLDLSDCDVMEIP--QDIGRASSLEILDISGNDFDSLPASIKQLSRLRELYLSNCSMLQSLP--EL---PLR 959 (1223)
Q Consensus 887 ~~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp--~l---~~~ 959 (1223)
...+++|+.+.|..+...... ..+.+++.|. .. +........+|+.|+++.|...+.-- .. ...
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~--------l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~ 428 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ES--------LELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSN 428 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hH--------HHHHhccCCccceEecccCccccccchHHHhhhhhc
Confidence 445666777777666643322 2233344331 11 11112222337777777775543211 00 223
Q ss_pred CcEEeccCCcCcC
Q 000922 960 VKLLDASNCKQLQ 972 (1223)
Q Consensus 960 L~~L~~~~c~~L~ 972 (1223)
+..+++.+|+...
T Consensus 429 ~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 429 LKDLDLSGCRVIT 441 (482)
T ss_pred cccCCccCccccc
Confidence 4555555555443
No 262
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.64 E-value=0.14 Score=60.08 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
...+|.++|.+|+||||+|.+++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998866544
No 263
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.64 E-value=0.043 Score=59.59 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=37.1
Q ss_pred HHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 251 QIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 251 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
.|.++|..+-..-.++.|+|.+|.|||++|.+++......-..++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344555444455689999999999999999999987766666677875
No 264
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.62 E-value=0.14 Score=62.91 Aligned_cols=50 Identities=28% Similarity=0.505 Sum_probs=39.4
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
|...++++|.+..++.+...+... ...-|.|+|.+|+||||+|+.+++..
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568999999999998876433 23456799999999999999998743
No 265
>PHA00729 NTP-binding motif containing protein
Probab=95.61 E-value=0.038 Score=58.71 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
+...|.|+|.+|+||||||.++.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999999764
No 266
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.55 E-value=0.03 Score=59.00 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=24.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
++|.++|+.|+||||.+.+++.+.+.+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 689999999999999999999877766
No 267
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.55 E-value=0.0083 Score=63.72 Aligned_cols=81 Identities=28% Similarity=0.293 Sum_probs=47.2
Q ss_pred cCCcccEEeecCC--cCcccchhhhcccccceeeecCCCCccccc--cccccCCCCcEEEccCCCCCCCCc----cccCC
Q 000922 772 KLKSLHLLCLYNC--SNFEIFPEILEKMECLEYIDLESTAVKELP--SSVEQLKGLRELILEDCSELSKLP----ENLGN 843 (1223)
Q Consensus 772 ~L~~L~~L~L~~c--~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~~~~l~~lp----~~l~~ 843 (1223)
.|++|+.|.++.| .....++.....+++|++|++++|.|+.+. ..+..+.+|..|++.+|.... +- ..+.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHH
Confidence 3666667777666 445555555556677777777777766421 124556667777777776544 11 12444
Q ss_pred CCCCceeecC
Q 000922 844 LKSLKRLFAK 853 (1223)
Q Consensus 844 l~~L~~L~l~ 853 (1223)
+++|+.|+-.
T Consensus 142 l~~L~~LD~~ 151 (260)
T KOG2739|consen 142 LPSLKYLDGC 151 (260)
T ss_pred hhhhcccccc
Confidence 5666666543
No 268
>PRK04296 thymidine kinase; Provisional
Probab=95.53 E-value=0.016 Score=60.98 Aligned_cols=110 Identities=20% Similarity=0.067 Sum_probs=58.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccC--cCCCCc-hHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLK--IRTPSV-PKCIKERL 340 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~--~~~~~~-~~~l~~~L 340 (1223)
.++.|+|..|.||||+|..++.+...+-..++++. - ......+... +.+.+...... ...... ...+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~~~~----i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYGEGK----VVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-cccccccCCc----EecCCCCcccceEeCChHHHHHHHHh-h
Confidence 47889999999999999999998766644444331 0 0011111111 12222110000 001111 222222 2
Q ss_pred hcCeEEEEecCCCC--HHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 000922 341 QQMKVFVVLDDVNK--PEQLDYLAGGLDRFGLGSRVVVTSRDRQ 382 (1223)
Q Consensus 341 ~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~ 382 (1223)
.++.-+||+|.+.- .+++..+...+ ...|-.||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 23556899999864 34444444332 146788999999854
No 269
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.50 E-value=0.052 Score=58.61 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=36.5
Q ss_pred HHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 250 EQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 250 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
..|..+|..+-..-+++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455556444455689999999999999999999987765545566763
No 270
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.49 E-value=0.19 Score=57.79 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=37.6
Q ss_pred CCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHH
Q 000922 239 FEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQ 286 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 286 (1223)
.+.++|....++++.+.+..-...-.-|.|+|..|+||+++|+.++..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 356899998888887776543333456889999999999999998863
No 271
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.45 E-value=0.032 Score=55.77 Aligned_cols=111 Identities=22% Similarity=0.284 Sum_probs=57.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCc-hHHHHHHHh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSV-PKCIKERLQ 341 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~ 341 (1223)
-.+++|.|..|.|||||++.+..... ...+.+++.......-.+. ....+. .-.+...+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHHHh
Confidence 36899999999999999999887432 2344455432100000000 000011 233445556
Q ss_pred cCeEEEEecCCCC---HHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEe
Q 000922 342 QMKVFVVLDDVNK---PEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEV 395 (1223)
Q Consensus 342 ~kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l 395 (1223)
.++=++++|+-.. ....+.+...+... +..||++|.+....... .++++.+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 6777889997632 22222222211111 24688888876655432 2444444
No 272
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.44 E-value=0.14 Score=52.26 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=70.2
Q ss_pred ehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc--------------------cCcceeeeechhh
Q 000922 244 GIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND--------------------FEGRCFMANVREE 303 (1223)
Q Consensus 244 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------F~~~~~~~~~~~~ 303 (1223)
|-+..++.|...+..+ .-...+.++|..|+||+|+|+++++.+-.. .+...|+... ..
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 3345566666666433 224567899999999999999999864221 1112222100 00
Q ss_pred hccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH-----hcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEE
Q 000922 304 SERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL-----QQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVV 376 (1223)
Q Consensus 304 ~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIi 376 (1223)
.......+ ...+.+.+ .+++=++|+||++.. +...+|+..+......+++|+
T Consensus 79 ~~~i~i~~---------------------ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 79 KKSIKIDQ---------------------IREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp SSSBSHHH---------------------HHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred cchhhHHH---------------------HHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 00011111 11222222 234567889999864 457777776666678899999
Q ss_pred EeCChh-hhhh-cCCCceEEecCCC
Q 000922 377 TSRDRQ-VFDK-CRVDKIYEVEGLN 399 (1223)
Q Consensus 377 TTR~~~-v~~~-~~~~~~~~l~~L~ 399 (1223)
+|++.. +... ......+.+.+++
T Consensus 138 ~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EES-GGGS-HHHHTTSEEEEE----
T ss_pred EECChHHChHHHHhhceEEecCCCC
Confidence 998764 3332 2233566666553
No 273
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.44 E-value=0.67 Score=53.39 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=34.8
Q ss_pred HHHHHHHhhhcCC-CCeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 248 RIEQIKSLLCVGL-PDFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 248 ~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
-.+.|.+.+.... .+..+|||.|.=|.||||+.+.+.+.+...
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3455666665543 678899999999999999999999988777
No 274
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.42 E-value=0.019 Score=67.02 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHH
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
...+|.+.|.+|+||||+|.+++.+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999999864
No 275
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.0019 Score=68.31 Aligned_cols=99 Identities=21% Similarity=0.240 Sum_probs=67.8
Q ss_pred cCccceeeeccccccccCccccccCCcccEEeecCCcCcccchhhhcccccceeeecCCCCcccccc--ccccCCCCcEE
Q 000922 749 LTKLEELDLAYCRRLKSLPSSICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDLESTAVKELPS--SVEQLKGLREL 826 (1223)
Q Consensus 749 L~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L 826 (1223)
|.+.+.||..||.. ..+. .+.+++.|++|.|+-|.+...- .+..|++|++|+|..|.|..+.. -+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L-~DIs-ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL-DDIS-ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCc-cHHH-HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45566777777643 2222 1456888888888887765543 36678889999999888887654 36788888888
Q ss_pred EccCCCCCCCCcc-----ccCCCCCCceee
Q 000922 827 ILEDCSELSKLPE-----NLGNLKSLKRLF 851 (1223)
Q Consensus 827 ~L~~~~~l~~lp~-----~l~~l~~L~~L~ 851 (1223)
.|..|...+.-+. .+.-|++|++|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888776665543 245566666664
No 276
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.40 E-value=0.05 Score=56.88 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
+|.|+|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998865
No 277
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.40 E-value=0.25 Score=51.99 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=41.0
Q ss_pred CCCCceehhhHHHHHHHhhh--cCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCc
Q 000922 238 DFEGLVGIYSRIEQIKSLLC--VGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEG 293 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 293 (1223)
....++|.+...+.+.+--. ...-..--|.+||--|.||+.|++++.+.+..+.-.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 34568999988777654211 122234467899999999999999999998887765
No 278
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.38 E-value=0.082 Score=53.17 Aligned_cols=117 Identities=19% Similarity=0.125 Sum_probs=59.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccC----c--CCC-C-----
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLK----I--RTP-S----- 331 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~----~--~~~-~----- 331 (1223)
.+|-|++-.|.||||+|...+-+...+=..+.++.=++. ....+-....+++ ..+.-...+ . .+. +
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg-~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKG-GWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCC-CCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 467888889999999999999876665444444322221 1122323333322 000000000 0 000 0
Q ss_pred --chHHHHHHHhc-CeEEEEecCCCCHH-----HHHHHhcCCCCCCCCCEEEEEeCChh
Q 000922 332 --VPKCIKERLQQ-MKVFVVLDDVNKPE-----QLDYLAGGLDRFGLGSRVVVTSRDRQ 382 (1223)
Q Consensus 332 --~~~~l~~~L~~-kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gsrIIiTTR~~~ 382 (1223)
..+..++.++. +-=|+|||++-..- ..+.+...+....++..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 02223333443 44599999984431 12333333333356778999999853
No 279
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.38 E-value=0.054 Score=62.87 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=36.1
Q ss_pred HHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 250 EQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 250 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3445555434344579999999999999999999987766555566763
No 280
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.29 Score=51.22 Aligned_cols=176 Identities=17% Similarity=0.268 Sum_probs=91.6
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHH-
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKER- 339 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~- 339 (1223)
...+-|.++|++|.|||-||++||+.- .||+..+.. ..+.++...+ . ...+++.
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht------~c~firvsg-------selvqk~ige----g--------srmvrelf 233 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSG-------SELVQKYIGE----G--------SRMVRELF 233 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEech-------HHHHHHHhhh----h--------HHHHHHHH
Confidence 346678899999999999999999842 233333321 1122222111 0 1112211
Q ss_pred ---HhcCeEEEEecCCCCHH--------------H--HHHHhcCCCCC--CCCCEEEEEeCChhhhhh-----cCCCceE
Q 000922 340 ---LQQMKVFVVLDDVNKPE--------------Q--LDYLAGGLDRF--GLGSRVVVTSRDRQVFDK-----CRVDKIY 393 (1223)
Q Consensus 340 ---L~~kr~LlVLDdv~~~~--------------~--~~~l~~~~~~~--~~gsrIIiTTR~~~v~~~-----~~~~~~~ 393 (1223)
-.+-+-.|..|.+++.. | .-.++..++.| ...-+||+.|..-+++.. -..+..+
T Consensus 234 vmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrki 313 (404)
T KOG0728|consen 234 VMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKI 313 (404)
T ss_pred HHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccc
Confidence 13557778888775421 1 22233333333 245678887776544432 2456788
Q ss_pred EecCCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCCCchHHHHHHhh--hccC----CHHHHHHHHhhh
Q 000922 394 EVEGLNQNEALEHFSNYAFRQNI-CPKDFLVLSERIVFYANGNPLALKVLGSF--LQRK----CKLQWENALKNL 461 (1223)
Q Consensus 394 ~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlPLal~~lg~~--L~~~----~~~~w~~~l~~l 461 (1223)
+.++.+++...+++.-+.-+-+- ..-++..+|.++....|.--.+..+=|++ |+.+ +.++++-+..+.
T Consensus 314 efp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 314 EFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred cCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHH
Confidence 88888888888888766533221 12344444444332222222333333332 2332 455666555543
No 281
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.35 E-value=0.1 Score=62.24 Aligned_cols=188 Identities=18% Similarity=0.216 Sum_probs=107.8
Q ss_pred CCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHh----hccC--cceeeeechhhhccCCH
Q 000922 236 SSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQIS----NDFE--GRCFMANVREESERGGL 309 (1223)
Q Consensus 236 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~----~~F~--~~~~~~~~~~~~~~~~l 309 (1223)
|...+++||-+.-++.|...+..+. -..--...|+-|+||||+||-++..+- ...+ ..|... +..... ..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g-~~ 87 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEG-SL 87 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcC-Cc
Confidence 4566788999999999998885443 123455789999999999999987431 1111 111110 010000 00
Q ss_pred HHHHHHHHHHHhhhccCcCCCCchHHHHHHHh-----cCeEEEEecCCCC--HHHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 000922 310 VYLRERLYSEILEETLKIRTPSVPKCIKERLQ-----QMKVFVVLDDVNK--PEQLDYLAGGLDRFGLGSRVVVTSRDR- 381 (1223)
Q Consensus 310 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~- 381 (1223)
.++. ++.. ..-...+..+.|.+... ++.=..|+|.|.- ...+.+|+..+....+.-..|..|++.
T Consensus 88 ~Dvi-----EiDa--ASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 88 IDVI-----EIDA--ASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred ccch-----hhhh--hhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 0000 0000 00011122444444433 4455788999965 456888988877656666666666654
Q ss_pred hhhhh-cCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc
Q 000922 382 QVFDK-CRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNP 436 (1223)
Q Consensus 382 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 436 (1223)
.+... ......|..+.++.++-...+...+-..+...+ .+...-|++..+|..
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e--~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE--EDALSLIARAAEGSL 214 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCCh
Confidence 33322 234578999999999988888887754443222 234455566666643
No 282
>PRK10867 signal recognition particle protein; Provisional
Probab=95.34 E-value=0.35 Score=57.15 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999999998876555
No 283
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.085 Score=62.20 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=77.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCc-hHHHHHHHh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSV-PKCIKERLQ 341 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~ 341 (1223)
..=|.+||++|.|||-||++|+|.-.-.|-.+ +. .. |+....++. +.. ...+++.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisV------KG-------PE----LlNkYVGES-----ErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISV------KG-------PE----LLNKYVGES-----ERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEee------cC-------HH----HHHHHhhhH-----HHHHHHHHHHhhc
Confidence 34578999999999999999999876665421 11 01 121111110 011 222233334
Q ss_pred cCeEEEEecCCCCHH-------------HHHHHhcCCCCC--CCCCEEEEEeCChhhhhh-----cCCCceEEecCCCHH
Q 000922 342 QMKVFVVLDDVNKPE-------------QLDYLAGGLDRF--GLGSRVVVTSRDRQVFDK-----CRVDKIYEVEGLNQN 401 (1223)
Q Consensus 342 ~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ 401 (1223)
..++.|.+|.++..- .+..|+..++.. ..|--||-.|...++..- -..+...-|+..+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 678999999986521 245555444432 235556655655444322 234678889999999
Q ss_pred HHHHHHHHhhh
Q 000922 402 EALEHFSNYAF 412 (1223)
Q Consensus 402 ea~~Lf~~~af 412 (1223)
|-.++++...-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 99999988874
No 284
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.29 E-value=0.05 Score=58.30 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=34.4
Q ss_pred hhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 256 LCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 256 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
|..+-..-+++.|+|.+|.|||++|.+++.....+-..++|+.
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4334355689999999999999999999987766667788885
No 285
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.062 Score=65.83 Aligned_cols=152 Identities=19% Similarity=0.203 Sum_probs=85.7
Q ss_pred CCceehhhHHHHHHHhhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCC
Q 000922 240 EGLVGIYSRIEQIKSLLCV-----------GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGG 308 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 308 (1223)
.++.|.+...+.+.+.... +-...+.+.++|++|.|||.||+++++.....|-....-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------
Confidence 4555666555555443321 113456899999999999999999999665554422111
Q ss_pred HHHHHHHHHHHHhhhccCcCCCCc-hHHHHHHHhcCeEEEEecCCCCHH-------------HHHHHhcCCCCCCCCC--
Q 000922 309 LVYLRERLYSEILEETLKIRTPSV-PKCIKERLQQMKVFVVLDDVNKPE-------------QLDYLAGGLDRFGLGS-- 372 (1223)
Q Consensus 309 l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs-- 372 (1223)
. +++...++ .+.. ...+....+..+..|.+|.++... ....++..+......+
T Consensus 311 --~----l~sk~vGe-----sek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 --E----LLSKWVGE-----SEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred --H----Hhccccch-----HHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 0 11100000 0001 222333335778999999985522 2333333333223333
Q ss_pred EEEEEeCChhhhhh-----cCCCceEEecCCCHHHHHHHHHHhhhc
Q 000922 373 RVVVTSRDRQVFDK-----CRVDKIYEVEGLNQNEALEHFSNYAFR 413 (1223)
Q Consensus 373 rIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 413 (1223)
.||-||-....... ...+..+.++..+.++..+.|..+.-.
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 34445544433331 134678999999999999999998753
No 286
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.21 E-value=0.31 Score=60.34 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=40.6
Q ss_pred CCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHH
Q 000922 237 SDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 237 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
.....++|....++++.+.+..-...-.-|.|+|..|+|||++|+.+++.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 355789999999998888775433334467899999999999999999853
No 287
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.19 E-value=0.45 Score=57.52 Aligned_cols=199 Identities=14% Similarity=0.107 Sum_probs=113.1
Q ss_pred CCCCceehhhHHHHHHHhhhc--CC-CCeEEEEEEccCCCchHHHHHHHHHHHh-----h---ccCcceeeeechhhhcc
Q 000922 238 DFEGLVGIYSRIEQIKSLLCV--GL-PDFQIIGIWGMGGIGKTTIAGAIFNQIS-----N---DFEGRCFMANVREESER 306 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~-----~---~F~~~~~~~~~~~~~~~ 306 (1223)
.+..+-+|+.+..+|...+.. .. ..-+.+-|.|.+|.|||..+..|.+.++ + .|+ ++.+.. -.-
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINg----m~l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEING----LRL 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcc----eee
Confidence 566788999999999988753 22 3345899999999999999999998543 2 243 233322 222
Q ss_pred CCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHh-----cCeEEEEecCCCCHHH--HHHHhcCCCCC-CCCCEEEEEe
Q 000922 307 GGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQ-----QMKVFVVLDDVNKPEQ--LDYLAGGLDRF-GLGSRVVVTS 378 (1223)
Q Consensus 307 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~--~~~l~~~~~~~-~~gsrIIiTT 378 (1223)
.+..++...|..++.+...... ...+.+..+.. .+..++++|+++..-. -+-+-..+.|. .++|+++|.+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~--~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWD--AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHH--HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 3466777777777765443211 11455555554 4578889999865432 22233334553 5788877655
Q ss_pred CCh--hhh---------hhcCCCceEEecCCCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHhCCCchHHHHHHh
Q 000922 379 RDR--QVF---------DKCRVDKIYEVEGLNQNEALEHFSNYAFRQNIC-PKDFLVLSERIVFYANGNPLALKVLGS 444 (1223)
Q Consensus 379 R~~--~v~---------~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~l~~~i~~~~~GlPLal~~lg~ 444 (1223)
=.. .+. ..+| ...+..++-++++-.++...+.-+-... ....+-+|++|+.-.|..-.|+.+.-+
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred ecccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 321 111 1111 1345566666666666666554332111 122223444555444444455544433
No 288
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.17 E-value=0.0025 Score=78.06 Aligned_cols=107 Identities=25% Similarity=0.338 Sum_probs=45.6
Q ss_pred cCccceeeecccccccc--CccccccCCcccEEeecCC-cCcccch----hhhcccccceeeecCCCC-ccccc-ccc-c
Q 000922 749 LTKLEELDLAYCRRLKS--LPSSICKLKSLHLLCLYNC-SNFEIFP----EILEKMECLEYIDLESTA-VKELP-SSV-E 818 (1223)
Q Consensus 749 L~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~L~~c-~~~~~~p----~~l~~l~~L~~L~L~~n~-l~~lp-~~i-~ 818 (1223)
+++|+.|.+.+|..+.. +-......+.|+.|++++| ......+ .....+.+|+.|+++.+. ++..- ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555666655554443 2223444556666666552 2211111 122334555555555544 22111 011 1
Q ss_pred cCCCCcEEEccCCCCCC--CCccccCCCCCCceeecCCc
Q 000922 819 QLKGLRELILEDCSELS--KLPENLGNLKSLKRLFAKRS 855 (1223)
Q Consensus 819 ~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~l~~n 855 (1223)
.+++|+.|.+.+|..+. .+-.....+++|+.|+++++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 24555555555554321 11112233444555555544
No 289
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.07 E-value=0.029 Score=56.13 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=28.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
.+|-|+|.+|.||||||+++..++...-..+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 5899999999999999999999988876655555
No 290
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.07 E-value=0.068 Score=55.72 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=64.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHH------HHHHHHHHhhhcc---CcCCCC--
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYL------RERLYSEILEETL---KIRTPS-- 331 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l------~~~ll~~l~~~~~---~~~~~~-- 331 (1223)
-.+++|.|..|.|||||++.++.... ...+.+++... ... ....... ..+++..+.-... ......
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~-~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGK-DLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-ECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 35899999999999999999987542 34555555321 110 0011111 1112222221110 111111
Q ss_pred -c-hHHHHHHHhcCeEEEEecCCCC---HHHHHHHhcCCCCC-CC-CCEEEEEeCChhhhhhcCCCceEEe
Q 000922 332 -V-PKCIKERLQQMKVFVVLDDVNK---PEQLDYLAGGLDRF-GL-GSRVVVTSRDRQVFDKCRVDKIYEV 395 (1223)
Q Consensus 332 -~-~~~l~~~L~~kr~LlVLDdv~~---~~~~~~l~~~~~~~-~~-gsrIIiTTR~~~v~~~~~~~~~~~l 395 (1223)
. .-.+.+.+...+-++++|+-.. ....+.+...+... .. |..||++|.+....... .+.++.+
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 1 3344556677888999998642 22222222222111 22 66788888887654332 2344444
No 291
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.04 E-value=0.019 Score=55.99 Aligned_cols=22 Identities=50% Similarity=0.748 Sum_probs=20.5
Q ss_pred EEEEccCCCchHHHHHHHHHHH
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
|+|.|++|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 292
>PRK00625 shikimate kinase; Provisional
Probab=95.04 E-value=0.044 Score=56.42 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHHh
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
.|.++||+|+||||+|+.+.++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 293
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.97 E-value=0.088 Score=57.15 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=35.0
Q ss_pred HHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhcc------Ccceeee
Q 000922 251 QIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDF------EGRCFMA 298 (1223)
Q Consensus 251 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 298 (1223)
.|..+|..+-..-.++.|+|.+|.|||+||..++......- ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34455544445568999999999999999999987655444 4567764
No 294
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.96 E-value=0.029 Score=66.83 Aligned_cols=51 Identities=29% Similarity=0.305 Sum_probs=41.7
Q ss_pred CCCceehhhHHHHHHHhhh----cCCCCeEEEEEEccCCCchHHHHHHHHHHHhh
Q 000922 239 FEGLVGIYSRIEQIKSLLC----VGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
..+++|++..++++.+.|. .-...-+++.++|++|+||||||+.+.+.+..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3478999999999988872 22345689999999999999999999985543
No 295
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.29 Score=57.00 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998665
No 296
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.92 E-value=0.45 Score=60.76 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=38.8
Q ss_pred CCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHH
Q 000922 238 DFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
....++|....++++.+.+..-...-.-|.|+|..|+|||++|+.+++.-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34579999988888876665333334578899999999999999998853
No 297
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.88 E-value=0.061 Score=54.23 Aligned_cols=91 Identities=26% Similarity=0.252 Sum_probs=44.4
Q ss_pred EEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcC--eE
Q 000922 268 IWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQM--KV 345 (1223)
Q Consensus 268 I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k--r~ 345 (1223)
|.|++|+||||+|+.++.++ .|.....-.-+++...... .+.+++ .+........++.-....++.++... .-
T Consensus 1 i~G~PgsGK~t~~~~la~~~--~~~~is~~~llr~~~~~~s--~~g~~i-~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~ 75 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY--GLVHISVGDLLREEIKSDS--ELGKQI-QEYLDNGELVPDELVIELLKERLEQPPCNR 75 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH--TSEEEEHHHHHHHHHHTTS--HHHHHH-HHHHHTTSS--HHHHHHHHHHHHHSGGTTT
T ss_pred CcCCCCCChHHHHHHHHHhc--CcceechHHHHHHHHhhhh--HHHHHH-HHHHHhhccchHHHHHHHHHHHHhhhcccc
Confidence 68999999999999999875 2321111111111111111 111222 12222221222111256666666532 45
Q ss_pred EEEecCCC-CHHHHHHHhc
Q 000922 346 FVVLDDVN-KPEQLDYLAG 363 (1223)
Q Consensus 346 LlVLDdv~-~~~~~~~l~~ 363 (1223)
-+|||+.- +.+|.+.+..
T Consensus 76 g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 76 GFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp EEEEESB-SSHHHHHHHHH
T ss_pred eeeeeeccccHHHHHHHHH
Confidence 67899994 4566666544
No 298
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.85 E-value=0.16 Score=54.30 Aligned_cols=228 Identities=18% Similarity=0.211 Sum_probs=122.3
Q ss_pred CCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhh------ccCcceeeeechh------h--
Q 000922 238 DFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN------DFEGRCFMANVRE------E-- 303 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~------~-- 303 (1223)
..+.+.+.++.-..+.++.. ..+..-..++|+.|.||-|.+..+.+++-+ +-+..-|...... +
T Consensus 11 sl~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred hhhhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 34456777777777776653 345778889999999999999998876533 2223333321111 0
Q ss_pred --------hccC-CHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeE-EEEecCCCCH--HHHHHHhcCCCCCCCC
Q 000922 304 --------SERG-GLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKV-FVVLDDVNKP--EQLDYLAGGLDRFGLG 371 (1223)
Q Consensus 304 --------~~~~-~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~--~~~~~l~~~~~~~~~g 371 (1223)
++.. .-..+.++++.++.....-.. -..+.| ++|+-.++.. +.-.+|..........
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~-----------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-----------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-----------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 0000 111233444444332211000 011233 4556555543 2233344333334566
Q ss_pred CEEEEEeCCh-hh-hhhcCCCceEEecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCc-hHHHHHHhhhc-
Q 000922 372 SRVVVTSRDR-QV-FDKCRVDKIYEVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNP-LALKVLGSFLQ- 447 (1223)
Q Consensus 372 srIIiTTR~~-~v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~lg~~L~- 447 (1223)
+|+|+.-.+. .+ ...-...-.+.+...+++|-...++..+-+++...+ .+++.+|+++++|+- -||-++-..-.
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 7777654331 11 111112246889999999999999998866554333 578999999999874 33333222111
Q ss_pred -----c----CCHHHHHHHHhhhcc-----CCCCcHHhHHHHhHhcc
Q 000922 448 -----R----KCKLQWENALKNLTR-----ISDPDIYDMLKISYNEL 480 (1223)
Q Consensus 448 -----~----~~~~~w~~~l~~l~~-----~~~~~i~~~L~~sy~~L 480 (1223)
. -..-+|+-++.+..+ .....+.++=..=|+-|
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1 134689988887543 23334444444445444
No 299
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.83 E-value=0.024 Score=59.93 Aligned_cols=26 Identities=42% Similarity=0.593 Sum_probs=23.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
||||.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 300
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.82 E-value=0.068 Score=64.37 Aligned_cols=76 Identities=21% Similarity=0.392 Sum_probs=46.6
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL 340 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 340 (1223)
+.-++..++|++|+||||||..++++- .|. +..+ ..++......+-..+...+........
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa--GYs----VvEI-NASDeRt~~~v~~kI~~avq~~s~l~a------------ 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA--GYS----VVEI-NASDERTAPMVKEKIENAVQNHSVLDA------------ 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc--Cce----EEEe-cccccccHHHHHHHHHHHHhhcccccc------------
Confidence 467899999999999999999998852 122 1111 234444444444444443332211100
Q ss_pred hcCeEEEEecCCCCH
Q 000922 341 QQMKVFVVLDDVNKP 355 (1223)
Q Consensus 341 ~~kr~LlVLDdv~~~ 355 (1223)
.+++.-+|+|.++..
T Consensus 385 dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCcceEEEecccCC
Confidence 267888999999864
No 301
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.80 E-value=0.18 Score=58.23 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=25.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhcc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDF 291 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 291 (1223)
-++++++|+.|+||||++.++..+...++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 47999999999999999999998765554
No 302
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.23 Score=57.29 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=77.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQ 342 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 342 (1223)
-|=-.++|+||.|||++..++++.+. |+ ++.....++..... ++.|+.. ..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v~~n~d----Lr~LL~~---------------------t~ 285 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEVKLDSD----LRHLLLA---------------------TP 285 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeeccccCcHH----HHHHHHh---------------------CC
Confidence 35567999999999999999998542 33 34333322222111 1222211 23
Q ss_pred CeEEEEecCCCCHHH--------------------HHHHhcCCC--CCCC-CCEEE-EEeCChhhh-----hhcCCCceE
Q 000922 343 MKVFVVLDDVNKPEQ--------------------LDYLAGGLD--RFGL-GSRVV-VTSRDRQVF-----DKCRVDKIY 393 (1223)
Q Consensus 343 kr~LlVLDdv~~~~~--------------------~~~l~~~~~--~~~~-gsrII-iTTR~~~v~-----~~~~~~~~~ 393 (1223)
.|-+||+.|++..-+ +--|+..++ |... +-||| .||-..+-+ .--..+-.+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 455666666654211 111222221 2222 33555 566654332 222345567
Q ss_pred EecCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHH-HHHHhhhccC
Q 000922 394 EVEGLNQNEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLAL-KVLGSFLQRK 449 (1223)
Q Consensus 394 ~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal-~~lg~~L~~~ 449 (1223)
++.--+.+.-..||..+...+. ++ .++.+|.+...|.-+.= .+.+.++..+
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 8888888888888888874322 23 33444444444443332 3333444444
No 303
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.77 E-value=0.052 Score=62.77 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=61.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee-echhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA-NVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQ 341 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 341 (1223)
-..|.|.|+.|.||||+++++.+.+......+++.. +-.+... ... ..+ +.....+.........++..|+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~-~~~----~~~---i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH-RNK----RSL---INQREVGLDTLSFANALRAALR 193 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc-cCc----cce---EEccccCCCCcCHHHHHHHhhc
Confidence 368999999999999999999987765555555432 1111000 000 000 0000111111222677888899
Q ss_pred cCeEEEEecCCCCHHHHHHHhcCCCCCCCCCEEEEEe
Q 000922 342 QMKVFVVLDDVNKPEQLDYLAGGLDRFGLGSRVVVTS 378 (1223)
Q Consensus 342 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTT 378 (1223)
..+=.|++|.+.+.+.+...... ...|..|+.|.
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~ 227 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTA---AETGHLVFGTL 227 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEE
Confidence 99999999999988776653332 13455544444
No 304
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.75 E-value=0.17 Score=60.32 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
..++|+|+|.+|+||||++.+++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999998876554
No 305
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.75 E-value=0.26 Score=56.33 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=48.8
Q ss_pred CeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhhhc-CCCceEEecCCCHHHHHHHHHHhhhcCCCCC
Q 000922 343 MKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDRQ-VFDKC-RVDKIYEVEGLNQNEALEHFSNYAFRQNICP 418 (1223)
Q Consensus 343 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 418 (1223)
.|+. |+|+++.. .....+...+.....+..+|++|.+.. +.... .....+.+.+++.+++.+.+.... . .
T Consensus 114 ~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~ 187 (325)
T PRK08699 114 LRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V-A 187 (325)
T ss_pred ceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-C
Confidence 3444 56888653 334444444333345566777777643 43332 234678999999999998886541 1 1
Q ss_pred hhHHHHHHHHHHHhCCCchH
Q 000922 419 KDFLVLSERIVFYANGNPLA 438 (1223)
Q Consensus 419 ~~~~~l~~~i~~~~~GlPLa 438 (1223)
.. ...+..++|-|+.
T Consensus 188 ~~-----~~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EP-----EERLAFHSGAPLF 202 (325)
T ss_pred cH-----HHHHHHhCCChhh
Confidence 11 1123567898854
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.73 E-value=0.078 Score=57.94 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=34.5
Q ss_pred HHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 250 EQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 250 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
..|-++|..+-+.-.++.|+|.+|.||||+|.++......+=..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3444555445456789999999999999999999765433444556663
No 307
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.73 E-value=0.081 Score=54.33 Aligned_cols=123 Identities=21% Similarity=0.186 Sum_probs=61.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeech---hhhccCCHH--HHHHHHHHHHhhhccCcCCCCc-hHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVR---EESERGGLV--YLRERLYSEILEETLKIRTPSV-PKCI 336 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~---~~~~~~~l~--~l~~~ll~~l~~~~~~~~~~~~-~~~l 336 (1223)
-.+++|.|..|.|||||++.++..... ..+.+++...+ -..+...+. .+.+.+... ........+. .-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 358999999999999999999874322 22333332100 001111111 122222100 1111111111 3344
Q ss_pred HHHHhcCeEEEEecCCCC------HHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEec
Q 000922 337 KERLQQMKVFVVLDDVNK------PEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEVE 396 (1223)
Q Consensus 337 ~~~L~~kr~LlVLDdv~~------~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~ 396 (1223)
.+.+..++=++++|+-.. ...+..+...+ +..||++|.+...... .++++.++
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~~--~d~i~~l~ 161 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWKF--HDRVLDLD 161 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHhh--CCEEEEEc
Confidence 555667778889997532 22232333222 3568888887765432 45555543
No 308
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.64 E-value=0.031 Score=55.43 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=30.8
Q ss_pred eehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 243 VGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 243 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
||.-..++++.+.+..-.....-|.|+|..|.||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 4555666666665543323345678999999999999999888533
No 309
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.64 E-value=0.35 Score=55.57 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=32.9
Q ss_pred ceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHH
Q 000922 242 LVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQ 286 (1223)
Q Consensus 242 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 286 (1223)
+||....++++.+.+..-...-.-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467666676666655443333355789999999999999999874
No 310
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.61 E-value=0.32 Score=54.56 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
..++++++|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999876543
No 311
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.55 E-value=0.56 Score=57.57 Aligned_cols=50 Identities=24% Similarity=0.244 Sum_probs=41.3
Q ss_pred CCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHH
Q 000922 238 DFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
....++|....++++.+.+..-...-.-|.|+|..|+|||++|+.+++.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999998888776544445678899999999999999999853
No 312
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.49 E-value=0.13 Score=61.54 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=36.3
Q ss_pred HHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 249 IEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 249 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555666444445679999999999999999999987765444556664
No 313
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.47 E-value=0.019 Score=54.75 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHhhccCc
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQISNDFEG 293 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~~~~F~~ 293 (1223)
|.|+|.+|+||||+|++++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988887764
No 314
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.17 Score=63.04 Aligned_cols=155 Identities=16% Similarity=0.173 Sum_probs=85.8
Q ss_pred CCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc-cCc-----ceeeeechhhhccCCHHH
Q 000922 238 DFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND-FEG-----RCFMANVREESERGGLVY 311 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~-----~~~~~~~~~~~~~~~l~~ 311 (1223)
..+.++||+.+++++.+.|+....+-. .++|.+|+|||++|.-++.++... -+. .++-.++ ..
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~---------g~ 236 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL---------GS 236 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH---------HH
Confidence 346799999999999999976543333 467999999999999999976432 221 1221111 01
Q ss_pred HHHHHHHHHhhhccCcCCCCchH-HHHHHHhcCeEEEEecCCCCH-----------HHHHHHhcCCCCCCCCCEEEEEeC
Q 000922 312 LRERLYSEILEETLKIRTPSVPK-CIKERLQQMKVFVVLDDVNKP-----------EQLDYLAGGLDRFGLGSRVVVTSR 379 (1223)
Q Consensus 312 l~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIIiTTR 379 (1223)
+ +.+......-++... .+++.-+.+++.+.+|.+... +.-.-|.+.+. .|.--.|-.||-
T Consensus 237 L-------vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT~ 308 (786)
T COG0542 237 L-------VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATTL 308 (786)
T ss_pred H-------hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEeccH
Confidence 0 001110000111122 222222345899999987442 12222333332 133334556665
Q ss_pred Chhh---hh---hcCCCceEEecCCCHHHHHHHHHHhh
Q 000922 380 DRQV---FD---KCRVDKIYEVEGLNQNEALEHFSNYA 411 (1223)
Q Consensus 380 ~~~v---~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a 411 (1223)
++.- -+ .-...+.+.|...+.+++..++.-..
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 4321 11 11234678899999999999887543
No 315
>PTZ00301 uridine kinase; Provisional
Probab=94.46 E-value=0.037 Score=58.91 Aligned_cols=29 Identities=28% Similarity=0.546 Sum_probs=25.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhcc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDF 291 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 291 (1223)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998875544
No 316
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.6 Score=53.53 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=28.0
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
..++++++|+.|+||||++..++.....+-..+.++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468999999999999999999998665443334444
No 317
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.42 E-value=0.087 Score=58.34 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhh
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
..|.|+|.||.||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999987665
No 318
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.38 E-value=0.12 Score=56.95 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=22.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
.|.++|++|.||||+|+++.......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877554
No 319
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.34 E-value=0.036 Score=47.43 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
+|+|.|.+|.||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 320
>PRK03839 putative kinase; Provisional
Probab=94.31 E-value=0.033 Score=58.13 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHHh
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
.|.|.|++|.||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999764
No 321
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.30 E-value=0.077 Score=62.61 Aligned_cols=46 Identities=24% Similarity=0.165 Sum_probs=38.2
Q ss_pred CCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhh
Q 000922 240 EGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
..++|+++.++.+...+..+. -|.|.|++|+|||++|+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 468999999999888775443 5789999999999999999986543
No 322
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.28 E-value=0.16 Score=56.22 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=58.7
Q ss_pred HHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCc
Q 000922 248 RIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKI 327 (1223)
Q Consensus 248 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~ 327 (1223)
.++.+..++.. .-.+|.|.|..|.||||+++++.+.+...-...+.+.+..+. .+..+ ..-....
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~----~~~~~--------~q~~v~~ 132 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEY----QIPGI--------NQVQVNE 132 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCcee----cCCCc--------eEEEeCC
Confidence 33445454422 235899999999999999999888764422223444322111 11100 0000000
Q ss_pred C-CCCchHHHHHHHhcCeEEEEecCCCCHHHHHHHh
Q 000922 328 R-TPSVPKCIKERLQQMKVFVVLDDVNKPEQLDYLA 362 (1223)
Q Consensus 328 ~-~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~ 362 (1223)
. .......++..|+..+=.|+++++.+.+....+.
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 1 1122677888889899999999999988655443
No 323
>PRK08356 hypothetical protein; Provisional
Probab=94.28 E-value=0.2 Score=52.90 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEEEccCCCchHHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIF 284 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~ 284 (1223)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999993
No 324
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.26 E-value=0.094 Score=54.23 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=58.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeec--hhhhccCCHHHHHHHHHHHHhhhccCcCCCCc-hHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANV--REESERGGLVYLRERLYSEILEETLKIRTPSV-PKCIKERL 340 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L 340 (1223)
.+++|.|..|.|||||++.+..-.. ...+.+++... .-..+... ....+. .-.+...+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~laral 86 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAAL 86 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHHH
Confidence 5899999999999999999886432 23344444221 00011000 000001 33445556
Q ss_pred hcCeEEEEecCCCC---HHH---HHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEec
Q 000922 341 QQMKVFVVLDDVNK---PEQ---LDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEVE 396 (1223)
Q Consensus 341 ~~kr~LlVLDdv~~---~~~---~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~ 396 (1223)
..++-+++||+-.. ... +..+...+.. ..+..||++|-+....... .+.++.+.
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 67788899998632 222 2222222111 1235677888776655433 23444444
No 325
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.24 E-value=0.07 Score=54.60 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=62.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCc-hHHHHHHHh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSV-PKCIKERLQ 341 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~ 341 (1223)
-.+++|.|..|.|||||.+.++-... ...+.+++... ... ........++ .+ .-.......+. .-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~-~~~~~~~~~~---~i-~~~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVS-FASPRDARRA---GI-AMVYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECC-cCCHHHHHhc---Ce-EEEEecCHHHHHHHHHHHHHh
Confidence 35899999999999999999986442 34455555321 110 0011010000 00 00000111111 334455566
Q ss_pred cCeEEEEecCCCC---HHHHHHHhcCCCCC-CCCCEEEEEeCChhhhhhcCCCceEEe
Q 000922 342 QMKVFVVLDDVNK---PEQLDYLAGGLDRF-GLGSRVVVTSRDRQVFDKCRVDKIYEV 395 (1223)
Q Consensus 342 ~kr~LlVLDdv~~---~~~~~~l~~~~~~~-~~gsrIIiTTR~~~v~~~~~~~~~~~l 395 (1223)
.++=++++|+-.. ....+.+...+... ..|..||++|.+...+... .+.++.+
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 7788889998643 22222222222111 2466788888887644432 3344444
No 326
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.24 E-value=0.17 Score=60.61 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=36.5
Q ss_pred HHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 249 IEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 249 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
+.++.++|..+-..-.++.|.|.+|+|||||+..++.....+-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44555666444455679999999999999999999887655434456763
No 327
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.23 E-value=0.1 Score=56.39 Aligned_cols=123 Identities=18% Similarity=0.153 Sum_probs=66.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeec--hhhhccCCHHHHHHHHHHHHhhhcc-------CcCCCCc
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANV--REESERGGLVYLRERLYSEILEETL-------KIRTPSV 332 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~~~~~~l~~l~~~ll~~l~~~~~-------~~~~~~~ 332 (1223)
.-.++||+|..|.||||+|+.+..-.... .+.+++..- .... .....+...+++..+..... .....+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 34689999999999999999998754433 233444211 0001 11222333444444332111 1111222
Q ss_pred -hHHHHHHHhcCeEEEEecCCCC------HHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhc
Q 000922 333 -PKCIKERLQQMKVFVVLDDVNK------PEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKC 387 (1223)
Q Consensus 333 -~~~l~~~L~~kr~LlVLDdv~~------~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 387 (1223)
.-.+.+.|.-++-|+|.|.-.+ ..|.-.++..+.. ..|-..+..|-|-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 4456777889999999997533 3344444433322 2355566666666555544
No 328
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.21 E-value=0.13 Score=53.05 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=62.7
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccC----------cCCCCc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLK----------IRTPSV 332 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~----------~~~~~~ 332 (1223)
-.+++|.|..|.|||||.+.++.... ...+.+++... .... .......+.+ . +..+... ....+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~-~~~~-~~~~~~~~~i-~-~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGV-DLRD-LDLESLRKNI-A-YVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCE-Ehhh-cCHHHHHhhE-E-EEcCCchhccchHHHHhhCHHHH
Confidence 35899999999999999999987543 23455554321 1000 0000000000 0 0000000 000011
Q ss_pred -hHHHHHHHhcCeEEEEecCCCC------HHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEe
Q 000922 333 -PKCIKERLQQMKVFVVLDDVNK------PEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEV 395 (1223)
Q Consensus 333 -~~~l~~~L~~kr~LlVLDdv~~------~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l 395 (1223)
.-.+...+..++-+++||+-.. ...+..+...+ ..+..||++|.+...... .++++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRAL---AKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh---cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 2234455667788999998643 22233333332 235678888888776653 4555554
No 329
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.19 E-value=0.0042 Score=65.80 Aligned_cols=84 Identities=25% Similarity=0.313 Sum_probs=60.2
Q ss_pred cccEEEccCCCCCCCCccccCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEeCCCCCCcccch--hhcCCCCCCEEeccC
Q 000922 869 EVIELSFHGCRGLVLPPILSGLSSLTKLDLSDCDVMEIPQDIGRASSLEILDISGNDFDSLPA--SIKQLSRLRELYLSN 946 (1223)
Q Consensus 869 ~L~~L~l~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~ 946 (1223)
+.+.|++.||....+. ....++.|+.|.|+-|.++++- .+..++.|+.|.|..|.|.++.+ -+.++|+|+.|.|..
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 3344444444432221 2456788899999999888764 36678899999999998887764 568899999999999
Q ss_pred CCCCCCCC
Q 000922 947 CSMLQSLP 954 (1223)
Q Consensus 947 ~~~l~~lp 954 (1223)
|+-.+.-+
T Consensus 98 NPCc~~ag 105 (388)
T KOG2123|consen 98 NPCCGEAG 105 (388)
T ss_pred CCcccccc
Confidence 88766544
No 330
>PRK06762 hypothetical protein; Provisional
Probab=94.19 E-value=0.041 Score=56.48 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
++|.|.|++|.||||+|+.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 331
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.17 E-value=0.22 Score=55.84 Aligned_cols=52 Identities=17% Similarity=0.081 Sum_probs=34.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhc-cCcceeeeechhhhccCCHHHHHHHHHHH
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISND-FEGRCFMANVREESERGGLVYLRERLYSE 319 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 319 (1223)
.-.++.|.|.+|+||||+|.+++.....+ =..++|+. -......+...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS------~E~~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS------LEEPVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE------cccCHHHHHHHHHHH
Confidence 34588899999999999999998876544 34455663 122334555555444
No 332
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.17 E-value=0.22 Score=52.59 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=52.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHH------HHHhhhccCcCCCCchHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLY------SEILEETLKIRTPSVPKCI 336 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll------~~l~~~~~~~~~~~~~~~l 336 (1223)
-+++.|.|.+|.||||+++.+...+...=..++++.-.. .....+.+..- ..+..............
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~-----~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~-- 90 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN-----KAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPE-- 90 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH-----HHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC--
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH-----HHHHHHHHhhCcchhhHHHHHhcCCccccccccc--
Confidence 367889999999999999999887666522233332110 01112222210 00000000000000000
Q ss_pred HHHHhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 000922 337 KERLQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDRQV 383 (1223)
Q Consensus 337 ~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~v 383 (1223)
..++-+||+|++.-. .++..+..... ..|++||+.--..++
T Consensus 91 ----~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL 133 (196)
T PF13604_consen 91 ----LPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQL 133 (196)
T ss_dssp -----TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSH
T ss_pred ----CCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchh
Confidence 123459999998654 45666665543 257888887665544
No 333
>PRK08233 hypothetical protein; Provisional
Probab=94.16 E-value=0.038 Score=57.64 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
..+|+|.|.+|.||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998653
No 334
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.16 E-value=0.034 Score=56.73 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=24.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCc
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEG 293 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 293 (1223)
+.|.+.|.+|+||||+|++++..++..-..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence 467899999999999999999876665443
No 335
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.64 Score=48.87 Aligned_cols=149 Identities=18% Similarity=0.313 Sum_probs=80.5
Q ss_pred CCceehhhHHHHHHHhhhc-----------CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCC
Q 000922 240 EGLVGIYSRIEQIKSLLCV-----------GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGG 308 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 308 (1223)
.++=|.+-..+++.+.... +-+..|-|.++|++|.|||.||++|++.-...|-.+ +..
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firv-----vgs------ 223 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRV-----VGS------ 223 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeee-----ccH------
Confidence 3455666555565554322 224467889999999999999999999766555422 111
Q ss_pred HHHHHHHHHHHHhhhccCcCCCCchHHHHHHH----hcCeEEEEecCCCCHHH----------------HHHHhcCCCCC
Q 000922 309 LVYLRERLYSEILEETLKIRTPSVPKCIKERL----QQMKVFVVLDDVNKPEQ----------------LDYLAGGLDRF 368 (1223)
Q Consensus 309 l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~~----------------~~~l~~~~~~~ 368 (1223)
++....+++. ..++++.. .+-+-.|.+|.|+.... +-.++.....|
T Consensus 224 ------efvqkylgeg--------prmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgf 289 (408)
T KOG0727|consen 224 ------EFVQKYLGEG--------PRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGF 289 (408)
T ss_pred ------HHHHHHhccC--------cHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCc
Confidence 1111111111 22222222 24577888888754321 22233333333
Q ss_pred C--CCCEEEEEeCChhh-----hhhcCCCceEEecCCCHHHHHHHHHHhhhc
Q 000922 369 G--LGSRVVVTSRDRQV-----FDKCRVDKIYEVEGLNQNEALEHFSNYAFR 413 (1223)
Q Consensus 369 ~--~gsrIIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 413 (1223)
. ..-+||+.|...+. +.--..+..++.+.-+..+-.-.|....-+
T Consensus 290 dq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titsk 341 (408)
T KOG0727|consen 290 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK 341 (408)
T ss_pred CcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc
Confidence 3 34577776654332 222234566777766666666667665543
No 336
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.15 E-value=0.28 Score=50.28 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=45.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhc--C
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQ--M 343 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~--k 343 (1223)
+.|.|.+|.|||++|.++... .....+|+...+ ..+ ..+++.+..............+....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~----~~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAE----AFD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccC----cCC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 679999999999999998765 334566664321 222 235555444322222222233335556665532 2
Q ss_pred eEEEEecCC
Q 000922 344 KVFVVLDDV 352 (1223)
Q Consensus 344 r~LlVLDdv 352 (1223)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347889986
No 337
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.14 E-value=0.25 Score=51.04 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
++.+.|++|.||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999877665
No 338
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.12 E-value=0.035 Score=52.25 Aligned_cols=26 Identities=35% Similarity=0.568 Sum_probs=22.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHhhcc
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQISNDF 291 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~~~~F 291 (1223)
|-|+|.+|+|||++|+.++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998766544
No 339
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.06 E-value=0.14 Score=52.89 Aligned_cols=91 Identities=26% Similarity=0.313 Sum_probs=47.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHH-hhccC-cceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCc-hHHHHHHHh
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQI-SNDFE-GRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSV-PKCIKERLQ 341 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~-~~~F~-~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~ 341 (1223)
.|.|.|.+|.||||+|+.+.+++ -.|.+ +.+|...+.. . ..+..++-.-+.. . ..-.... ...+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~---~---t~lg~~~k~~i~~-g-~lv~d~i~~~~v~~rl~ 73 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAE---R---TELGEEIKKYIDK-G-ELVPDEIVNGLVKERLD 73 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhcc---C---ChHHHHHHHHHHc-C-CccchHHHHHHHHHHHH
Confidence 47899999999999999999973 11222 1122221111 1 1222222221211 1 1212222 466666665
Q ss_pred cC--eEEEEecCCCC-HHHHHHHhc
Q 000922 342 QM--KVFVVLDDVNK-PEQLDYLAG 363 (1223)
Q Consensus 342 ~k--r~LlVLDdv~~-~~~~~~l~~ 363 (1223)
.. +--+|+|+.-. ..|.+.+..
T Consensus 74 ~~d~~~~~I~dg~PR~~~qa~~l~r 98 (178)
T COG0563 74 EADCKAGFILDGFPRTLCQARALKR 98 (178)
T ss_pred hhcccCeEEEeCCCCcHHHHHHHHH
Confidence 42 22899999955 455555543
No 340
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.15 Score=55.53 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccC
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFE 292 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 292 (1223)
...++|||++|.|||-+|++|+..+.-.|-
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl 195 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNFL 195 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCceE
Confidence 578999999999999999999998755553
No 341
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.06 E-value=0.049 Score=58.38 Aligned_cols=27 Identities=44% Similarity=0.658 Sum_probs=24.3
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHH
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 342
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.03 E-value=0.055 Score=56.83 Aligned_cols=30 Identities=40% Similarity=0.534 Sum_probs=26.9
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
..+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 457899999999999999999999988765
No 343
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.02 E-value=0.027 Score=36.04 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=13.1
Q ss_pred CccEEEccCCCcccccccccc
Q 000922 728 NVIELDLKGTAIEEIPSSIEC 748 (1223)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~i~~ 748 (1223)
+|++|+|++|.|+.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666666544
No 344
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.99 E-value=0.14 Score=55.33 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEccCCCchHHHHHHHHHHH
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
|.|.|++|+||||+|+.+++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998865
No 345
>PRK04040 adenylate kinase; Provisional
Probab=93.98 E-value=0.048 Score=57.09 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=23.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHh
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
.+|+|+|++|.||||+++.+..++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 346
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.36 Score=56.19 Aligned_cols=148 Identities=19% Similarity=0.221 Sum_probs=77.8
Q ss_pred CCCceehhh---HHHHHHHhhhcCC-------CCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCC
Q 000922 239 FEGLVGIYS---RIEQIKSLLCVGL-------PDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGG 308 (1223)
Q Consensus 239 ~~~~vGr~~---~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 308 (1223)
.++.-|.|+ ++++|.+.|.... .=.+=|.++|++|.|||-||++++-+-.-- +|.....+..+-+
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~sGSEFdEm~- 377 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYASGSEFDEMF- 377 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEeccccchhhhh-
Confidence 345667765 4555666664322 124668899999999999999998753221 1221111111000
Q ss_pred HHHHHHHHHHHHhhhccCcCCCCchHHHHHHH----hcCeEEEEecCCCCHH-------------HHHHHhcCCCCCCCC
Q 000922 309 LVYLRERLYSEILEETLKIRTPSVPKCIKERL----QQMKVFVVLDDVNKPE-------------QLDYLAGGLDRFGLG 371 (1223)
Q Consensus 309 l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~g 371 (1223)
- +. ....+++.. +.-++.|.+|.++... .+..|+..++.|.+.
T Consensus 378 ---------V-------Gv----GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN 437 (752)
T KOG0734|consen 378 ---------V-------GV----GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN 437 (752)
T ss_pred ---------h-------cc----cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC
Confidence 0 00 022222222 3568999999886521 266676666666543
Q ss_pred CEEEE--EeCChhhhh-hc---C-CCceEEecCCCHHHHHHHHHHhh
Q 000922 372 SRVVV--TSRDRQVFD-KC---R-VDKIYEVEGLNQNEALEHFSNYA 411 (1223)
Q Consensus 372 srIIi--TTR~~~v~~-~~---~-~~~~~~l~~L~~~ea~~Lf~~~a 411 (1223)
.-||| .|.-.+.++ .+ | .+..+.|+..+-.--.++|..+.
T Consensus 438 eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 438 EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 33333 333333222 11 2 34556666666655556666554
No 347
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.89 E-value=0.05 Score=54.20 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=20.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHHh
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
+|.++|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987543
No 348
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.56 Score=59.45 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=70.0
Q ss_pred CCceehhhHHHHHHHhhhcCC------CCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHH
Q 000922 240 EGLVGIYSRIEQIKSLLCVGL------PDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLR 313 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~~------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~ 313 (1223)
+.++|-++.+..|.+.+.... ...-...+.|+.|+|||-||++++.-+.+..+..+-+. +...+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhhh
Confidence 457888888988888775422 13556779999999999999999998877766555542 22222
Q ss_pred HHHHHHHhhhccCcCCCCchHHHHHHHhcCeE-EEEecCCCCHH
Q 000922 314 ERLYSEILEETLKIRTPSVPKCIKERLQQMKV-FVVLDDVNKPE 356 (1223)
Q Consensus 314 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~ 356 (1223)
+ .+++.+...+.........+.+.++.+++ .|.||||+..+
T Consensus 632 e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred h--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 2 33333333333333336678888888876 55579998643
No 349
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.86 E-value=0.79 Score=54.88 Aligned_cols=72 Identities=26% Similarity=0.280 Sum_probs=45.9
Q ss_pred ceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHh-hccCcceeeeechhhhccCCHHHHHHHHHHHH
Q 000922 242 LVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQIS-NDFEGRCFMANVREESERGGLVYLRERLYSEI 320 (1223)
Q Consensus 242 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 320 (1223)
..|...-...|.+++. +-..-.++.|-|.+|+|||++|..++..+. .+-..++|+ +-.....++..+++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~f------SlEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFF------SLEMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEE------ECCCCHHHHHHHHHHHH
Confidence 4455555555656553 334456889999999999999999997654 222334555 23345566666666543
No 350
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.85 E-value=0.059 Score=57.60 Aligned_cols=28 Identities=50% Similarity=0.699 Sum_probs=24.4
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
+...+|+|.|++|.||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998654
No 351
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.84 E-value=0.2 Score=50.36 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHHh
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998765
No 352
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.82 E-value=0.23 Score=58.21 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=32.1
Q ss_pred hHHHHHHHhhh-----cCCCCeEEEEEEccCCCchHHHHHHHHHHH
Q 000922 247 SRIEQIKSLLC-----VGLPDFQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 247 ~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
..++++..||. ...-+.+++.|+|++|.||||..+.++..+
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 44566666766 344567899999999999999999988753
No 353
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.80 E-value=0.22 Score=51.72 Aligned_cols=122 Identities=20% Similarity=0.182 Sum_probs=62.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHH--------------HHHHHHhhhccCcC
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRE--------------RLYSEILEETLKIR 328 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~--------------~ll~~l~~~~~~~~ 328 (1223)
-.+++|.|..|.|||||++.++-.... -.+.+++... ..... .....+ .+...+ .....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~~--~~~~~~~i~~~~q~~~~~~~tv~~~i---~~~LS 100 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-PVSDL--EKALSSLISVLNQRPYLFDTTLRNNL---GRRFS 100 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-EHHHH--HHHHHhhEEEEccCCeeecccHHHhh---cccCC
Confidence 358999999999999999999874322 2344444321 00000 000000 000000 00011
Q ss_pred CCCc-hHHHHHHHhcCeEEEEecCCCC---HH---HHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEec
Q 000922 329 TPSV-PKCIKERLQQMKVFVVLDDVNK---PE---QLDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEVE 396 (1223)
Q Consensus 329 ~~~~-~~~l~~~L~~kr~LlVLDdv~~---~~---~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~ 396 (1223)
..+. .-.+.+.+-.++=+++||+... .. .+..+...+ ..|..||++|.+...... .++++.+.
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---LKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 1111 2334455667788889998743 12 222222222 236778888888776653 45555543
No 354
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.74 E-value=0.52 Score=56.29 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=24.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
-++++++|+.|+||||++.+++..+..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~ 283 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR 283 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh
Confidence 4799999999999999999999866433
No 355
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.66 E-value=0.059 Score=56.59 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHH
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
++.+|+|.|++|+||||+|+.+...+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998764
No 356
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.65 E-value=0.098 Score=56.88 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=26.8
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 260 LPDFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 260 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
.....+|||.|..|.|||||++.+...+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4567899999999999999999999876554
No 357
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.64 E-value=0.16 Score=52.49 Aligned_cols=124 Identities=18% Similarity=0.239 Sum_probs=62.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccC------------cCCC
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLK------------IRTP 330 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~------------~~~~ 330 (1223)
-.+++|+|..|.|||||++.++.... ...+.+++... .... .. ....+.+ . ...+... ....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~-~~-~~~~~~i-~-~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGK-DIKK-EP-EEVKRRI-G-YLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-Eccc-ch-HhhhccE-E-EEecCCccccCCcHHHHhhcCHH
Confidence 35899999999999999999887432 23444444221 0000 00 0000000 0 0000000 0001
Q ss_pred Cc-hHHHHHHHhcCeEEEEecCCCC---H---HHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEe
Q 000922 331 SV-PKCIKERLQQMKVFVVLDDVNK---P---EQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEV 395 (1223)
Q Consensus 331 ~~-~~~l~~~L~~kr~LlVLDdv~~---~---~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l 395 (1223)
+. .-.+...+..++=++++|+-.. . ..+..+...+. ..|..||++|.+....... .++++.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 11 2345556677888999998743 1 22222222221 2367789999887765533 3445444
No 358
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.62 E-value=0.19 Score=54.11 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=29.6
Q ss_pred HHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 250 EQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 250 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
.++.+.+........+|||.|.||.|||||.-++...+..+
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444444444567899999999999999999999877654
No 359
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.62 E-value=0.19 Score=54.25 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=34.3
Q ss_pred hHHHHHHHhcCeEEEEecC----CCC--HHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh
Q 000922 333 PKCIKERLQQMKVFVVLDD----VNK--PEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDK 386 (1223)
Q Consensus 333 ~~~l~~~L~~kr~LlVLDd----v~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 386 (1223)
...+.+.|..++=|+|||. ||- ...+-.+...+.. .|..|+++|-|-.....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHh
Confidence 4566778889999999995 333 3334445444433 38889999988654443
No 360
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=1.5 Score=46.47 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=83.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH--
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL-- 340 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-- 340 (1223)
.+-|..+|++|.|||-+|++.+.+-...|-.-+ .+ ++.+.+ .+. ....+++..
T Consensus 205 PKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLA----------gP---QLVQMf----IGd--------GAkLVRDAFaL 259 (424)
T KOG0652|consen 205 PKGVLMYGPPGTGKTLMARACAAQTNATFLKLA----------GP---QLVQMF----IGD--------GAKLVRDAFAL 259 (424)
T ss_pred CCceEeeCCCCCcHHHHHHHHHHhccchHHHhc----------ch---HHHhhh----hcc--------hHHHHHHHHHH
Confidence 456789999999999999998876544442110 00 111111 110 012222221
Q ss_pred --hcCeEEEEecCCCCHH--------------H--HHHHhcCCCCCCC--CCEEEEEeCChhh-----hhhcCCCceEEe
Q 000922 341 --QQMKVFVVLDDVNKPE--------------Q--LDYLAGGLDRFGL--GSRVVVTSRDRQV-----FDKCRVDKIYEV 395 (1223)
Q Consensus 341 --~~kr~LlVLDdv~~~~--------------~--~~~l~~~~~~~~~--gsrIIiTTR~~~v-----~~~~~~~~~~~l 395 (1223)
...+..|.+|.++... | .-.++..+..|.+ .-+||-.|..-++ +..-..+..++.
T Consensus 260 AKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEf 339 (424)
T KOG0652|consen 260 AKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEF 339 (424)
T ss_pred hhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccC
Confidence 2457888888764311 1 2234444554544 3456666654433 333345667787
Q ss_pred cCCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHhCCCchHHHHHHhhh
Q 000922 396 EGLNQNEALEHFSNYAFRQN-ICPKDFLVLSERIVFYANGNPLALKVLGSFL 446 (1223)
Q Consensus 396 ~~L~~~ea~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 446 (1223)
+..+++...+++.-++-+.+ .+.-+++++++.--..-|.--.|..+=|+++
T Consensus 340 P~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMi 391 (424)
T KOG0652|consen 340 PHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMI 391 (424)
T ss_pred CCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHH
Confidence 77777666667766664433 4556787777654332222223444444443
No 361
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.079 Score=63.62 Aligned_cols=53 Identities=30% Similarity=0.406 Sum_probs=43.9
Q ss_pred CCceehhhHHHHHHHhhhc----CCCCeEEEEEEccCCCchHHHHHHHHHHHhhccC
Q 000922 240 EGLVGIYSRIEQIKSLLCV----GLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFE 292 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 292 (1223)
++.+|+++-.++|.+++.. ++-+-++++.+|++|+|||.+|+.++..+-..|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 3578999999999888854 3445689999999999999999999997766654
No 362
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.58 E-value=0.18 Score=54.07 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEccCCCchHHHHHHHHHHH
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
|.|.|++|.||||+|+.+..++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999988754
No 363
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.56 E-value=0.056 Score=55.92 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
...|.|+|++|.||||+|++++.++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999986
No 364
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.55 E-value=0.026 Score=36.10 Aligned_cols=20 Identities=50% Similarity=0.884 Sum_probs=11.5
Q ss_pred CCcEEeCCCCCCcccchhhc
Q 000922 915 SLEILDISGNDFDSLPASIK 934 (1223)
Q Consensus 915 ~L~~L~Ls~n~l~~lp~~l~ 934 (1223)
+|++|+|++|+++.+|++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35566666666666665543
No 365
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.51 E-value=0.12 Score=52.29 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=23.7
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhcc
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDF 291 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 291 (1223)
+-|.++||.|.||||+.+++++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998765554
No 366
>PRK06217 hypothetical protein; Validated
Probab=93.48 E-value=0.22 Score=52.09 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
.|.|.|++|.||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 367
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.48 E-value=0.25 Score=54.76 Aligned_cols=117 Identities=13% Similarity=0.116 Sum_probs=63.7
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccC-----cCCCCchHHH
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLK-----IRTPSVPKCI 336 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~-----~~~~~~~~~l 336 (1223)
+...++|+|..|.|||||.+.+...++.. .+.+++... .+.......++...+ ..+...... .........+
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHHHh-cccccccccccccccccchHHHHH
Confidence 35789999999999999999999866543 333333210 111000011121110 000000000 0111112223
Q ss_pred HHHHh-cCeEEEEecCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhh
Q 000922 337 KERLQ-QMKVFVVLDDVNKPEQLDYLAGGLDRFGLGSRVVVTSRDRQVF 384 (1223)
Q Consensus 337 ~~~L~-~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~ 384 (1223)
...++ ..+=++++|.+...+.+..+..... .|..||+||-+..+.
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 33333 6788999999988877777665542 577899999876553
No 368
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.45 E-value=0.31 Score=50.38 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFN 285 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~ 285 (1223)
-.+++|+|+.|.|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999998853
No 369
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.45 E-value=0.1 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHH
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
.-.+|.+.|.-|.||||+++.++..+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999999864
No 370
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.44 E-value=0.079 Score=60.36 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=54.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccC-CHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERG-GLVYLRERLYSEILEETLKIRTPSVPKCIKERL 340 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~-~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 340 (1223)
.-..++|.|..|.||||+++++...+.... ..+.+.+..+..... ....+ .. .............+.++..|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l----~~--~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL----FY--SKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE----Ee--cCCCCCcCccCHHHHHHHHh
Confidence 346899999999999999999987654332 233443322211110 00000 00 00000111122256777788
Q ss_pred hcCeEEEEecCCCCHHHHHHHh
Q 000922 341 QQMKVFVVLDDVNKPEQLDYLA 362 (1223)
Q Consensus 341 ~~kr~LlVLDdv~~~~~~~~l~ 362 (1223)
+..+=.+|+|.+...+.++.+.
T Consensus 216 r~~pd~ii~gE~r~~e~~~~l~ 237 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDFIR 237 (308)
T ss_pred cCCCCeEEEeccCCHHHHHHHH
Confidence 8888899999999877665444
No 371
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.44 E-value=0.11 Score=52.75 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=63.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCc-hHHHHHHHhc
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSV-PKCIKERLQQ 342 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~ 342 (1223)
.+++|.|..|.|||||++.+...+. ...+.+++... .... ......... +.- .......+. .-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~-~~~~~~~~~----i~~-~~qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK-LPLEELRRR----IGY-VPQLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc-CCHHHHHhc----eEE-EeeCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999987543 34555665321 1100 001111110 000 000111111 3334555666
Q ss_pred CeEEEEecCCCC---HHHHHHHhcCCCC-CCCCCEEEEEeCChhhhhhcCCCceEEe
Q 000922 343 MKVFVVLDDVNK---PEQLDYLAGGLDR-FGLGSRVVVTSRDRQVFDKCRVDKIYEV 395 (1223)
Q Consensus 343 kr~LlVLDdv~~---~~~~~~l~~~~~~-~~~gsrIIiTTR~~~v~~~~~~~~~~~l 395 (1223)
++=++++|+... ......+...+.. ...+..+|++|-+....... .++++.+
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 788999998743 2222222222111 12256788888887666543 3455554
No 372
>PRK13947 shikimate kinase; Provisional
Probab=93.43 E-value=0.056 Score=55.78 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhh
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
-|.|+||+|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999987643
No 373
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.37 E-value=0.17 Score=55.37 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=32.8
Q ss_pred HHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc------cCcceeee
Q 000922 252 IKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND------FEGRCFMA 298 (1223)
Q Consensus 252 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 298 (1223)
|..+|..+-..-.++.|+|.+|.||||||..++...... -..++|+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 444454344456899999999999999999997543222 25677774
No 374
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.22 E-value=0.27 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQ 286 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~ 286 (1223)
-.+++|+|..|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999853
No 375
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.21 E-value=1.3 Score=54.31 Aligned_cols=50 Identities=22% Similarity=0.116 Sum_probs=37.1
Q ss_pred CCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHH
Q 000922 237 SDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQ 286 (1223)
Q Consensus 237 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 286 (1223)
...+.++|....++++.+.+..-...-.-|.|+|..|.||+++|+++.+.
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 45678999998888777665422222234779999999999999997663
No 376
>PRK06547 hypothetical protein; Provisional
Probab=93.20 E-value=0.084 Score=54.35 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHH
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
....+|+|.|++|.||||+|+.+....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998863
No 377
>PRK14526 adenylate kinase; Provisional
Probab=93.20 E-value=0.24 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEccCCCchHHHHHHHHHHH
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
|.|+|++|.||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988754
No 378
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.15 E-value=0.07 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEccCCCchHHHHHHHHHHH
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
|.++|.+|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.15 E-value=0.35 Score=51.44 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=34.5
Q ss_pred HHHHHhcCeEEEEecCCCC---HHHHH-HHhcCCCCCC-C-CCEEEEEeCChhhhhhcCCCceEEec
Q 000922 336 IKERLQQMKVFVVLDDVNK---PEQLD-YLAGGLDRFG-L-GSRVVVTSRDRQVFDKCRVDKIYEVE 396 (1223)
Q Consensus 336 l~~~L~~kr~LlVLDdv~~---~~~~~-~l~~~~~~~~-~-gsrIIiTTR~~~v~~~~~~~~~~~l~ 396 (1223)
+.+.+..++-++++|+... ....+ .+...+.... . |..||++|.+...... .+.++.+.
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 4455667889999998743 22223 3332222222 2 5678888888776653 45666654
No 380
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.22 Score=56.61 Aligned_cols=98 Identities=22% Similarity=0.240 Sum_probs=57.0
Q ss_pred HHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCc-
Q 000922 249 IEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKI- 327 (1223)
Q Consensus 249 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~- 327 (1223)
+.++.+.|.-+--.-.+|.|=|-+|||||||..+++.++..+- .+.|+. .+....++.-+ ...+.....+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GEES~~QiklR-A~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GEESLQQIKLR-ADRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CCcCHHHHHHH-HHHhCCCccceE
Confidence 3455555533323346899999999999999999999998777 677773 23333322111 11222111111
Q ss_pred -CCCCchHHHHHHH-hcCeEEEEecCCCC
Q 000922 328 -RTPSVPKCIKERL-QQMKVFVVLDDVNK 354 (1223)
Q Consensus 328 -~~~~~~~~l~~~L-~~kr~LlVLDdv~~ 354 (1223)
-.+...+.|.+.+ +.++-|+|+|-+..
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccce
Confidence 1112234444444 46788999998754
No 381
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=0.33 Score=51.32 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=27.2
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeec
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANV 300 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 300 (1223)
+-.+-|.++|++|.|||-+|++|+|+-. .||+..+
T Consensus 209 dppkgvllygppgtgktl~aravanrtd-----acfirvi 243 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRVI 243 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEeeh
Confidence 3456688999999999999999999743 4566433
No 382
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.12 E-value=0.25 Score=51.03 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=62.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccC----------cCCCCc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLK----------IRTPSV 332 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~----------~~~~~~ 332 (1223)
-.+++|.|..|.|||||++.++.... ...+.+++... ... ........+.+. ...+... ....+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~-~~~~~~~~~~i~--~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DIS-QWDPNELGDHVG--YLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Ecc-cCCHHHHHhheE--EECCCCccccCcHHHHCcCHHHH
Confidence 35899999999999999999987532 23444444321 100 001111111000 0000000 000111
Q ss_pred -hHHHHHHHhcCeEEEEecCCCC---H---HHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEe
Q 000922 333 -PKCIKERLQQMKVFVVLDDVNK---P---EQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEV 395 (1223)
Q Consensus 333 -~~~l~~~L~~kr~LlVLDdv~~---~---~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l 395 (1223)
.-.+...+..++=+++||+-.. . ..+..+...+. ..|..||++|.+..... . .++++.+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 2334455566777889998643 2 22323332221 23677888888877664 3 4555555
No 383
>PRK14528 adenylate kinase; Provisional
Probab=93.06 E-value=0.23 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
+.|.|.|++|.||||+|+.+...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998764
No 384
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.05 E-value=0.35 Score=49.13 Aligned_cols=53 Identities=11% Similarity=0.267 Sum_probs=37.5
Q ss_pred hHHHHHHHhcCeEEEEecC----CCCHHHHHHH--hcCCCCCCCCCEEEEEeCChhhhhhc
Q 000922 333 PKCIKERLQQMKVFVVLDD----VNKPEQLDYL--AGGLDRFGLGSRVVVTSRDRQVFDKC 387 (1223)
Q Consensus 333 ~~~l~~~L~~kr~LlVLDd----v~~~~~~~~l--~~~~~~~~~gsrIIiTTR~~~v~~~~ 387 (1223)
.-.|.+.+-+++-+++-|. ++....|+-+ ...+ ...|..|||+|-|.++...+
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhc
Confidence 4566777788999999994 5554444433 2222 35699999999999988776
No 385
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.01 E-value=0.12 Score=53.67 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=24.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
..+|+|.|++|.||||+|++++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999997754
No 386
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.00 E-value=0.077 Score=55.01 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHh
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
++|.+.|++|.||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988753
No 387
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.00 E-value=0.28 Score=53.31 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCchHHHHHHHHH
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFN 285 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~ 285 (1223)
.-.+++|.|+.|.|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999985
No 388
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.99 E-value=0.19 Score=54.02 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
.|.|.|++|.||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 389
>PRK01184 hypothetical protein; Provisional
Probab=92.92 E-value=0.25 Score=51.63 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=17.9
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFN 285 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~ 285 (1223)
.+|+|+|++|.||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 479999999999999987 443
No 390
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.90 E-value=0.87 Score=59.31 Aligned_cols=195 Identities=18% Similarity=0.140 Sum_probs=94.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhcc----CcceeeeechhhhccCCHH--HHHHHHHHHHhhhccCcCCCCchHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISNDF----EGRCFMANVREESERGGLV--YLRERLYSEILEETLKIRTPSVPKCIKE 338 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~F----~~~~~~~~~~~~~~~~~l~--~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 338 (1223)
-+.|+|-+|.||||+...++-....+. +..+|+..-.......... .+..-+...+... ... ........+
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~-~~~--~~~~~~~~e 300 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ-GIA--KQLIEAHQE 300 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc-CCc--chhhHHHHH
Confidence 688999999999999999887443322 2222221110000000111 1122221111111 111 111222357
Q ss_pred HHhcCeEEEEecCCCCHHH------HHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEecCCCHHHHHHH------
Q 000922 339 RLQQMKVFVVLDDVNKPEQ------LDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEVEGLNQNEALEH------ 406 (1223)
Q Consensus 339 ~L~~kr~LlVLDdv~~~~~------~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~L------ 406 (1223)
.++..++|+.+|.++.... ...+-...++ -+.+++|+|+|....-.....-..+++..+.++.-...
T Consensus 301 ~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~ 379 (824)
T COG5635 301 LLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWL 379 (824)
T ss_pred HHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHH
Confidence 8899999999999877542 2222222222 35889999999764433332234455555555443322
Q ss_pred --HHHhhhcCCCCC-hhHH-HH---HHHHHHHhCCCchHHHHHHhhhc------cCCHHHHHHHHhhhcc
Q 000922 407 --FSNYAFRQNICP-KDFL-VL---SERIVFYANGNPLALKVLGSFLQ------RKCKLQWENALKNLTR 463 (1223)
Q Consensus 407 --f~~~af~~~~~~-~~~~-~l---~~~i~~~~~GlPLal~~lg~~L~------~~~~~~w~~~l~~l~~ 463 (1223)
+....++..... ..+. .+ ..+-++.....|++|.+.+..-. ....+-++.+++.+-.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 380 DAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 212222211111 0111 11 12233444778988888774333 2244556666665544
No 391
>PRK09354 recA recombinase A; Provisional
Probab=92.84 E-value=0.31 Score=55.58 Aligned_cols=49 Identities=27% Similarity=0.307 Sum_probs=37.4
Q ss_pred HHHHHhhh-cCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 250 EQIKSLLC-VGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 250 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
..|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34555665 33455689999999999999999999887766666677774
No 392
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.80 E-value=0.067 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
.++|+|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998877765
No 393
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.79 E-value=0.23 Score=55.05 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcce
Q 000922 260 LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRC 295 (1223)
Q Consensus 260 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 295 (1223)
..++.+|.|.|.+|.|||||+..+.+.+.......+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 346899999999999999999999998877654333
No 394
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.76 E-value=0.92 Score=46.29 Aligned_cols=29 Identities=28% Similarity=0.060 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhcc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDF 291 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 291 (1223)
..+|-|++-.|.||||.|..++-+...+=
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g 33 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG 33 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC
Confidence 35788888899999999999988765543
No 395
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.75 E-value=0.11 Score=53.93 Aligned_cols=26 Identities=42% Similarity=0.621 Sum_probs=22.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999876543
No 396
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.74 E-value=0.26 Score=54.72 Aligned_cols=45 Identities=27% Similarity=0.298 Sum_probs=37.4
Q ss_pred HhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 254 SLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 254 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
++|..+-+.-+++.|+|.+|.|||++|.++..+...+.+.++|+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344344466789999999999999999999998888888888884
No 397
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.70 E-value=3.4 Score=47.82 Aligned_cols=41 Identities=29% Similarity=0.339 Sum_probs=31.1
Q ss_pred HHHHHHhhhcCC-------CCeEEEEEEccCCCchHHHHHHHHHHHhh
Q 000922 249 IEQIKSLLCVGL-------PDFQIIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 249 ~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
.++|.++|..+. ....+|-.+|.-|.||||.|-++++.++.
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 355666665311 23678999999999999999999987766
No 398
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.70 E-value=1 Score=49.77 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=24.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
..+++++|.+|+||||+++.+...+..+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~ 102 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK 102 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 4799999999999999999998876543
No 399
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.67 E-value=0.15 Score=54.06 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=28.8
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
....+|+|+|++|.||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3457999999999999999999999775443334555
No 400
>PRK14531 adenylate kinase; Provisional
Probab=92.67 E-value=0.28 Score=51.27 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
+.|.|.|++|.||||+|+.++..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998875
No 401
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.67 E-value=1.5 Score=55.70 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=37.3
Q ss_pred CCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHH
Q 000922 238 DFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQ 286 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 286 (1223)
..+.++|....++++.+....-...-.-|.|+|..|+||+++|+++.+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 3567899988888777666433223334789999999999999999874
No 402
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.66 E-value=0.82 Score=51.19 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.8
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHH
Q 000922 260 LPDFQIIGIWGMGGIGKTTIAGAIF 284 (1223)
Q Consensus 260 ~~~~~vv~I~G~gGiGKTtLA~~v~ 284 (1223)
.+++..|.+.|.+|.|||-||.+..
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHH
Confidence 4678999999999999999998754
No 403
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.66 E-value=0.12 Score=54.21 Aligned_cols=92 Identities=21% Similarity=0.202 Sum_probs=52.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccC---cCCCCchHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLK---IRTPSVPKCIKER 339 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~---~~~~~~~~~l~~~ 339 (1223)
-..++|.|..|.||||+++++...+... ...+.+.+..+..... .... ++...... .......+.++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 3589999999999999999998866432 2333332221111000 0000 00000000 0111225667777
Q ss_pred HhcCeEEEEecCCCCHHHHHHHh
Q 000922 340 LQQMKVFVVLDDVNKPEQLDYLA 362 (1223)
Q Consensus 340 L~~kr~LlVLDdv~~~~~~~~l~ 362 (1223)
++..+=.+|++.+.+.+.++.+.
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHH
Confidence 88888899999999887766544
No 404
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.65 E-value=0.41 Score=61.15 Aligned_cols=181 Identities=15% Similarity=0.075 Sum_probs=87.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHH-HhhccCcceeeee--------chhhhccCCHHHHHHHHHHHHhhhccCcCCCCc
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQ-ISNDFEGRCFMAN--------VREESERGGLVYLRERLYSEILEETLKIRTPSV 332 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~F~~~~~~~~--------~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~ 332 (1223)
+.++++|+|+.|.||||+.+.+.-. +..+- .+++.. ........+..+-..+-++.+.. .
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~--G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~---------~ 389 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQS--GIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSG---------H 389 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHh--CCCccCCccccccchhheeeecChHhHHhhhhhHHHH---------H
Confidence 3479999999999999999998764 21111 111110 00000000100000000111111 0
Q ss_pred hHHHHHHHh--cCeEEEEecCCCC---HHHHHH----HhcCCCCCCCCCEEEEEeCChhhhhhcC-CCce--EEecCCCH
Q 000922 333 PKCIKERLQ--QMKVFVVLDDVNK---PEQLDY----LAGGLDRFGLGSRVVVTSRDRQVFDKCR-VDKI--YEVEGLNQ 400 (1223)
Q Consensus 333 ~~~l~~~L~--~kr~LlVLDdv~~---~~~~~~----l~~~~~~~~~gsrIIiTTR~~~v~~~~~-~~~~--~~l~~L~~ 400 (1223)
...+...+. ..+-|+++|..-. ...-.. +...+. ..|+.+|+||-+..+..... ...+ +.+. ++.
T Consensus 390 m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~ 466 (771)
T TIGR01069 390 MKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE 466 (771)
T ss_pred HHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC
Confidence 222233333 4789999999854 222222 222221 35789999999877643321 1111 1111 111
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCchHHHHHHhhhccCCHHHHHHHHhhhcc
Q 000922 401 NEALEHFSNYAFRQNICPKDFLVLSERIVFYANGNPLALKVLGSFLQRKCKLQWENALKNLTR 463 (1223)
Q Consensus 401 ~ea~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~~ 463 (1223)
+.+. |..+ +..+.+.. ..|-+|++++ |+|-.+..-|..+.+....+++..+++|..
T Consensus 467 -~~l~-p~Yk-l~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 467 -ETLS-PTYK-LLKGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred -CCCc-eEEE-ECCCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 1111 11222222 2355666665 889888888877776655666666666543
No 405
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.62 E-value=0.31 Score=51.84 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
-.+++|+|..|.|||||++.+.....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 36899999999999999999887543
No 406
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.60 E-value=0.14 Score=59.15 Aligned_cols=52 Identities=21% Similarity=0.188 Sum_probs=36.4
Q ss_pred CCceehhhHHHHHHHhhhcC------------CCCeEEEEEEccCCCchHHHHHHHHHHHhhcc
Q 000922 240 EGLVGIYSRIEQIKSLLCVG------------LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDF 291 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 291 (1223)
.++||.++..+.+...+... ....+-|.++|++|+||||+|++++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 35677777776665444321 11236788999999999999999999765443
No 407
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.59 E-value=0.11 Score=53.37 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHhh
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
|.|.|.+|+|||||++.+.+.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 408
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.58 E-value=0.085 Score=56.82 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=22.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhh
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
+|||.|.+|.||||+|+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999987753
No 409
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.56 E-value=0.085 Score=54.92 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 410
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.56 E-value=0.17 Score=51.99 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=26.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHh-hccCccee
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQIS-NDFEGRCF 296 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~ 296 (1223)
..++.+.|+.|+|||.||+++++.+. +.....+-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~ 37 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIR 37 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHH
Confidence 45788999999999999999999876 44444333
No 411
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.54 E-value=0.48 Score=49.91 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEEEccCCCchHHHHHHHHHHH
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998864
No 412
>PRK13949 shikimate kinase; Provisional
Probab=92.50 E-value=0.094 Score=53.93 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHHh
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
-|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 413
>PRK14529 adenylate kinase; Provisional
Probab=92.49 E-value=0.34 Score=51.89 Aligned_cols=89 Identities=24% Similarity=0.181 Sum_probs=47.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHhhcc-Ccceeeeechhh-hccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcC
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQISNDF-EGRCFMANVREE-SERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQM 343 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~-~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 343 (1223)
|.|.|++|.||||+|+.++.++.-.+ ...-.+ ++. .....+....+ ++.....-.++.-....+.+++.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdll---r~~i~~~t~lg~~i~----~~i~~G~lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIF---REHIGGGTELGKKAK----EYIDRGDLVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhh---hhhccCCChHHHHHH----HHHhccCcchHHHHHHHHHHHHhcc
Confidence 77899999999999999998763221 111111 111 11111222222 2222222222222266777777532
Q ss_pred -eEEEEecCCC-CHHHHHHH
Q 000922 344 -KVFVVLDDVN-KPEQLDYL 361 (1223)
Q Consensus 344 -r~LlVLDdv~-~~~~~~~l 361 (1223)
.-=+|||+.- +.+|.+.|
T Consensus 76 ~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 76 GKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred CCCcEEEeCCCCCHHHHHHH
Confidence 3458999994 45665554
No 414
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.48 E-value=0.19 Score=61.02 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=39.4
Q ss_pred HHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 249 IEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 249 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
+.++.++|..+-..-.++.|.|.+|+||||||.++......+-+.++|+.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45666777555566789999999999999999999987766666667763
No 415
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.46 E-value=0.099 Score=54.18 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=23.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999765
No 416
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=92.45 E-value=1 Score=45.63 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFN 285 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~ 285 (1223)
...|+++|++|+|||||...+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 35688999999999999998875
No 417
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.44 E-value=0.92 Score=49.68 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHHh
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
+..|+|+||+||||||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999987654
No 418
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.39 E-value=0.2 Score=57.96 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=37.1
Q ss_pred CCceehhhHHHHHHHhhhc---------C---CCCeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 240 EGLVGIYSRIEQIKSLLCV---------G---LPDFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
.+++|.+...+.+..++.. + ....+.|.++|++|+||||||+.+...+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 4578888877777665532 0 0113678999999999999999999876443
No 419
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.38 E-value=0.21 Score=55.14 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=37.3
Q ss_pred HHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 252 IKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 252 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
|..+|..+-+.-+++=|+|+.|.||||+|.+++-..+..-...+|++
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 34455444456789999999999999999999887777777888885
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.37 E-value=0.13 Score=55.19 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFN 285 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~ 285 (1223)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999885
No 421
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=92.36 E-value=1.3 Score=50.46 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=34.0
Q ss_pred ceEEecCCCHHHHHHHHHHhhhc----CCCCChhHHHHHHHHHHHhCCCchHHHHHHhhh
Q 000922 391 KIYEVEGLNQNEALEHFSNYAFR----QNICPKDFLVLSERIVFYANGNPLALKVLGSFL 446 (1223)
Q Consensus 391 ~~~~l~~L~~~ea~~Lf~~~af~----~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 446 (1223)
.+++|+..+.+|+.++...+.-. ...+. ++.-+++.-..+|+|--++-++.++
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 46889999999998877665421 11222 2334566666789996666666554
No 422
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.36 E-value=0.0024 Score=76.40 Aligned_cols=128 Identities=26% Similarity=0.309 Sum_probs=62.1
Q ss_pred CCCcEEEccCCCCCC----CCccccCCCCCCceeecCCccccc-----CCccc----cccccccEEEccCCCCCC-----
Q 000922 821 KGLRELILEDCSELS----KLPENLGNLKSLKRLFAKRSAISK-----LPSSI----AYLDEVIELSFHGCRGLV----- 882 (1223)
Q Consensus 821 ~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~n~i~~-----lp~~~----~~l~~L~~L~l~~~~~~~----- 882 (1223)
..|++|++..|.... .+...+.....|+.++++.|.+.. ++..+ ....++++|++++|....
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 344555555555432 233445556667777777766541 12222 234455555555554331
Q ss_pred CCccccCCCC-CCEEEcCCCCCCC-----CchhhcCC-CCCcEEeCCCCCCc-----ccchhhcCCCCCCEEeccCCC
Q 000922 883 LPPILSGLSS-LTKLDLSDCDVME-----IPQDIGRA-SSLEILDISGNDFD-----SLPASIKQLSRLRELYLSNCS 948 (1223)
Q Consensus 883 ~p~~~~~l~~-L~~L~L~~~~l~~-----lp~~l~~l-~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~~~ 948 (1223)
+...+...++ +..|++..|.+.+ +...+..+ ..++.|+++.|.|+ .+...+..++.++.|.+++|+
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 1111223333 4446666665553 22333333 45566666666555 234444555566666665554
No 423
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.36 E-value=0.088 Score=55.86 Aligned_cols=23 Identities=57% Similarity=0.785 Sum_probs=21.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
+|||.|.+|.||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 424
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=1.5 Score=47.61 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=36.1
Q ss_pred CCceehhhHHHHHHHhhhc----------CCCCeEEEEEEccCCCchHHHHHHHHHHH
Q 000922 240 EGLVGIYSRIEQIKSLLCV----------GLPDFQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
.++-|.+...+.|.+..-. ...--+-|.++|++|.||+.||++|+...
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 4677888877777764322 11235789999999999999999999864
No 425
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.34 E-value=0.088 Score=58.92 Aligned_cols=123 Identities=22% Similarity=0.199 Sum_probs=68.7
Q ss_pred CCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHH
Q 000922 240 EGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSE 319 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 319 (1223)
+++.-.....+++.++|...-...+.|.|.|..|.||||+++++...+...-...+-+.+..+. .+. .
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~----~l~--------~ 171 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL----RLP--------G 171 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S------S--------C
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce----eec--------c
Confidence 3344333444556666644333458999999999999999999998776651222333322111 110 0
Q ss_pred HhhhccC--cCCCCchHHHHHHHhcCeEEEEecCCCCHHHHHHHhcCCCCCCCCCEEEEEe
Q 000922 320 ILEETLK--IRTPSVPKCIKERLQQMKVFVVLDDVNKPEQLDYLAGGLDRFGLGSRVVVTS 378 (1223)
Q Consensus 320 l~~~~~~--~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTT 378 (1223)
....... .........++..|+..+=.+|++.+.+.+....+... ..|..+-+||
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT 228 (270)
T PF00437_consen 172 PNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTT 228 (270)
T ss_dssp SSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEE
T ss_pred cceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeee
Confidence 0000000 11122277788889988889999999988877764433 4566773444
No 426
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.25 E-value=0.28 Score=59.55 Aligned_cols=58 Identities=24% Similarity=0.317 Sum_probs=38.1
Q ss_pred HHHHHHHhcCeEEEEecCCCC------HHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEecC
Q 000922 334 KCIKERLQQMKVFVVLDDVNK------PEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEVEG 397 (1223)
Q Consensus 334 ~~l~~~L~~kr~LlVLDdv~~------~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~~ 397 (1223)
-.+.+.|-.++=+++||.=.+ ..-++.++.. -+| .+||+|-|+..++.+ +..+++++.
T Consensus 162 v~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V-~t~I~~ld~ 225 (530)
T COG0488 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNV-ATHILELDR 225 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHH-hhheEEecC
Confidence 345556667888999996433 3334554443 345 799999999888876 445666553
No 427
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.25 E-value=1.5 Score=53.45 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=37.2
Q ss_pred CCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHH
Q 000922 240 EGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQ 286 (1223)
Q Consensus 240 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 286 (1223)
..++|....+.++...+..-...-..|.|+|.+|.|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899988888877766543344456889999999999999998874
No 428
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.23 E-value=0.11 Score=52.52 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEccCCCchHHHHHHHHHHH
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
|.|+|++|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998875
No 429
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.23 E-value=0.38 Score=52.58 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=35.6
Q ss_pred HHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 251 QIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 251 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
.|-++|..+-..-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 444556545556789999999999999999998765445556677774
No 430
>PRK05439 pantothenate kinase; Provisional
Probab=92.21 E-value=0.2 Score=56.37 Aligned_cols=29 Identities=34% Similarity=0.319 Sum_probs=25.2
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHhh
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
....+|||.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999886654
No 431
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.21 E-value=0.1 Score=52.23 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
+|.|.|.+|.||||+|+++..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 432
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.20 E-value=0.18 Score=50.00 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=25.9
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
++|.|+|..|+|||||++.+.+.+..+--.++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 4799999999999999999999877553333433
No 433
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.20 E-value=0.1 Score=52.22 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=18.5
Q ss_pred EEEEEccCCCchHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIF 284 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~ 284 (1223)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 434
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.19 E-value=0.36 Score=54.55 Aligned_cols=88 Identities=24% Similarity=0.304 Sum_probs=54.3
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhcc--CcceeeeechhhhccC-CHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDF--EGRCFMANVREESERG-GLVYLRERLYSEILEETLKIRTPSVPKCIKERL 340 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~-~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 340 (1223)
+.+.|.|..|.||||+++++.+.+.... ...+-+.+..+..-.. +... + . .........+.++..|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~--~-~~~~~~~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------L--R-TSDDAISMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------E--E-ecCCCCCHHHHHHHHh
Confidence 4678999999999999999998876532 2233343332211100 0000 0 0 0001112367888889
Q ss_pred hcCeEEEEecCCCCHHHHHHHh
Q 000922 341 QQMKVFVVLDDVNKPEQLDYLA 362 (1223)
Q Consensus 341 ~~kr~LlVLDdv~~~~~~~~l~ 362 (1223)
+..+=-||+..+.+.+.++.+.
T Consensus 202 R~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred cCCCCEEEEeccCCHHHHHHHH
Confidence 9899999999999988766543
No 435
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.18 E-value=0.11 Score=54.01 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHh
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
++++|.|++|+||||+|+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 436
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.18 E-value=4.9 Score=45.74 Aligned_cols=48 Identities=29% Similarity=0.322 Sum_probs=32.7
Q ss_pred eEEecCCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHHhCCCchHH
Q 000922 392 IYEVEGLNQNEALEHFSNYAFRQNICP-KDFLVLSERIVFYANGNPLAL 439 (1223)
Q Consensus 392 ~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlPLal 439 (1223)
.++|++++.+|+..++..++-.+-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988764332222 222334556666669999654
No 437
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.46 Score=49.95 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=38.1
Q ss_pred hHHHHHHHhcCeEEEEecCCCCHHHHHH---HhcCCCC-CCCCCEEEEEeCChhhhhhcCCCceE
Q 000922 333 PKCIKERLQQMKVFVVLDDVNKPEQLDY---LAGGLDR-FGLGSRVVVTSRDRQVFDKCRVDKIY 393 (1223)
Q Consensus 333 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~---l~~~~~~-~~~gsrIIiTTR~~~v~~~~~~~~~~ 393 (1223)
...+.+.+--++=|.|||..++--++++ +...... ..+|+-++|.|-.+.++.....+.++
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 5566666777889999998876333222 2222111 14577788888888888876555544
No 438
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.11 E-value=0.1 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.9
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQ 286 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~ 286 (1223)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999886
No 439
>PRK13948 shikimate kinase; Provisional
Probab=92.04 E-value=0.11 Score=53.92 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
..+.|.++||.|.||||+++.+.++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998764
No 440
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.02 E-value=0.2 Score=54.64 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=32.5
Q ss_pred HHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccC
Q 000922 251 QIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFE 292 (1223)
Q Consensus 251 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 292 (1223)
++...+........+|||.|.||+|||||.-++-.++..+=.
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 444445455567789999999999999999999887755544
No 441
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.02 E-value=0.22 Score=61.80 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=47.3
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhh-ccCcceeeee
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN-DFEGRCFMAN 299 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~ 299 (1223)
++...+.++|.+..++.|...+... +.+.++|.+|.||||+|+.+.+.+.. .++...|+.+
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 4455678999998888888777443 46889999999999999999986533 3566777765
No 442
>PRK13946 shikimate kinase; Provisional
Probab=92.01 E-value=0.11 Score=54.37 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
.+.|.+.|++|.||||+|+.+++++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999986
No 443
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.01 E-value=0.14 Score=54.58 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=29.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeec
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANV 300 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 300 (1223)
....|.++||+|.||||..+.++..+..++.. -|+.|.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNL 55 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINL 55 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeC
Confidence 45688899999999999999999887777653 344444
No 444
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.98 E-value=0.21 Score=57.87 Aligned_cols=95 Identities=12% Similarity=0.115 Sum_probs=55.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCc---ceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEG---RCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKER 339 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 339 (1223)
-..|.|+|+.|.||||+++++...+....+. ++.+.+-. ......+... ..-+.....+.........++..
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi----E~~~~~~~~~-~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI----EFVYDEIETI-SASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc----eEeccccccc-cceeeeeeccccccCHHHHHHHH
Confidence 4699999999999999999999877554432 22222111 1111111000 00000000011111226778888
Q ss_pred HhcCeEEEEecCCCCHHHHHHHh
Q 000922 340 LQQMKVFVVLDDVNKPEQLDYLA 362 (1223)
Q Consensus 340 L~~kr~LlVLDdv~~~~~~~~l~ 362 (1223)
|+..+-.+++..+.+.+..+...
T Consensus 209 LR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 209 LRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred hccCCCEEeeeeeCCHHHHHHHH
Confidence 99999999999999988765443
No 445
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=2 Score=52.65 Aligned_cols=149 Identities=18% Similarity=0.208 Sum_probs=79.1
Q ss_pred CCCCC-CCceehhhHHHHHHHhhhcC----------CCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhh
Q 000922 235 FSSDF-EGLVGIYSRIEQIKSLLCVG----------LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREE 303 (1223)
Q Consensus 235 ~~~~~-~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~ 303 (1223)
.|.+. +++=|.++...+|.+-+... -....=|.++|++|.|||-+|++|+.+.+=.| +. ++.
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS-VKG- 738 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS-VKG- 738 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee-ecC-
Confidence 34444 45667777667776655431 12244688999999999999999998754333 22 111
Q ss_pred hccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCHH---------------HHHHHhcCCCCC
Q 000922 304 SERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKPE---------------QLDYLAGGLDRF 368 (1223)
Q Consensus 304 ~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---------------~~~~l~~~~~~~ 368 (1223)
. +|.+.-. + .......+...+.-..+++.|.+|.++... ....++..++..
T Consensus 739 -----P-ELLNMYV----G----qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgl 804 (953)
T KOG0736|consen 739 -----P-ELLNMYV----G----QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGL 804 (953)
T ss_pred -----H-HHHHHHh----c----chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcc
Confidence 0 1222111 1 111111333333335789999999987632 123333333322
Q ss_pred C----CCCEEEEEeCChhhhhh-----cCCCceEEecCCCHHHHH
Q 000922 369 G----LGSRVVVTSRDRQVFDK-----CRVDKIYEVEGLNQNEAL 404 (1223)
Q Consensus 369 ~----~gsrIIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~ 404 (1223)
. .+--||=.|...++++- -..++...|+.=+.+++.
T Consensus 805 s~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk 849 (953)
T KOG0736|consen 805 SDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESK 849 (953)
T ss_pred cCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHH
Confidence 2 23334544544444332 134567777776666654
No 446
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.94 E-value=0.34 Score=56.04 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=56.4
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhh----ccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHH
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISN----DFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIK 337 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~----~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~ 337 (1223)
..+=+-|||..|.|||.|+-.+|+.+.. +...+-|+ .++.+.+.... ...+....+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm----------------~~vh~~l~~~~---~~~~~l~~va 121 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFM----------------LDVHSRLHQLR---GQDDPLPQVA 121 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHH----------------HHHHHHHHHHh---CCCccHHHHH
Confidence 4677889999999999999999996432 22222222 22222222211 1122256666
Q ss_pred HHHhcCeEEEEecCCC--CHH---HHHHHhcCCCCCCCCCEEEEEeCCh
Q 000922 338 ERLQQMKVFVVLDDVN--KPE---QLDYLAGGLDRFGLGSRVVVTSRDR 381 (1223)
Q Consensus 338 ~~L~~kr~LlVLDdv~--~~~---~~~~l~~~~~~~~~gsrIIiTTR~~ 381 (1223)
+.+.++..||.||.+. +.. -+..|...+ +..|. |+|+|.+.
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGV-VLVATSNR 167 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCC-EEEecCCC
Confidence 7778888899999753 332 244444333 23454 55666554
No 447
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.92 E-value=0.1 Score=51.64 Aligned_cols=27 Identities=26% Similarity=0.595 Sum_probs=22.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhcc
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISNDF 291 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~F 291 (1223)
.|+|+|+.|+|||||++.+...+...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998654443
No 448
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.86 E-value=0.17 Score=51.83 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=25.2
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
...+++|+|..|.|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45799999999999999999999877653
No 449
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.78 E-value=0.48 Score=49.50 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.9
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
..+|+|.|.+|.||||+|+.+...+..
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999987643
No 450
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.70 E-value=0.23 Score=54.98 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=29.7
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
..-.++.|.|.+|.||||+|.+++.....+=+.++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44679999999999999999998775544445667774
No 451
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=91.66 E-value=3.2 Score=46.78 Aligned_cols=153 Identities=10% Similarity=0.064 Sum_probs=86.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhh--------c-cC-cceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCc
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISN--------D-FE-GRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSV 332 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~-F~-~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~ 332 (1223)
.++..++|..|.||+++|+++.+.+-. . .+ ...++. . ........++. ++...+....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~--~g~~i~vd~Ir-~l~~~~~~~~-------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I--FDKDLSKSEFL-SAINKLYFSS-------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c--CCCcCCHHHHH-HHHHHhccCC--------
Confidence 467789999999999999999987611 1 11 111121 0 00111112211 1111110000
Q ss_pred hHHHHHHHhcCeEEEEecCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCCCceEEecCCCHHHHHHHHH
Q 000922 333 PKCIKERLQQMKVFVVLDDVNKPE--QLDYLAGGLDRFGLGSRVVVTSRD-RQVFDK-CRVDKIYEVEGLNQNEALEHFS 408 (1223)
Q Consensus 333 ~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 408 (1223)
.-.+++=++|+|+++... ...+|+..+....+.+.+|++|.+ ..+... .....++++.++++++..+.+.
T Consensus 86 ------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 86 ------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred ------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHH
Confidence 001366678889887653 366677766666777887776644 445443 3345789999999999988776
Q ss_pred HhhhcCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 000922 409 NYAFRQNICPKDFLVLSERIVFYANGNPLALKV 441 (1223)
Q Consensus 409 ~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 441 (1223)
... .++ +.+..++..++|.=-|++.
T Consensus 160 ~~~-----~~~---~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 160 SKN-----KEK---EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HcC-----CCh---hHHHHHHHHcCCHHHHHHH
Confidence 531 111 3345556666652244444
No 452
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.66 E-value=0.26 Score=55.68 Aligned_cols=58 Identities=31% Similarity=0.249 Sum_probs=40.8
Q ss_pred CCCCCceehhhHHHH---HHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcc
Q 000922 237 SDFEGLVGIYSRIEQ---IKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGR 294 (1223)
Q Consensus 237 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 294 (1223)
...+++||.....+. +.++...+.-.-|.|.+.|++|.|||+||.+++..+..+.+.+
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 346789998877665 3455544444458899999999999999999999998877743
No 453
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.64 E-value=0.22 Score=56.38 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=28.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
.|++.+.|.||+||||+|.+.+-........+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 58899999999999999999888777776543333
No 454
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.63 E-value=0.71 Score=57.94 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
-++|+++|+.|+||||++.+++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999998663
No 455
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.63 E-value=0.45 Score=50.07 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhh
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
.++.|.|.+|+||||++..+...+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37889999999999999999986653
No 456
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=1.1 Score=54.58 Aligned_cols=127 Identities=19% Similarity=0.238 Sum_probs=71.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCc---ceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEG---RCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSVPKCIKER 339 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 339 (1223)
.+=|.++|++|.|||.||++++....-.|-. .-|+. -. .+...........+.
T Consensus 183 PkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe--------------------mf----VGvGAsRVRdLF~qA 238 (596)
T COG0465 183 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE--------------------MF----VGVGASRVRDLFEQA 238 (596)
T ss_pred ccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh--------------------hh----cCCCcHHHHHHHHHh
Confidence 4668899999999999999999854333211 11110 00 011111112333444
Q ss_pred HhcCeEEEEecCCCCH----------------HHHHHHhcCCCCCCCCCEEE-E-EeCChhhhh-----hcCCCceEEec
Q 000922 340 LQQMKVFVVLDDVNKP----------------EQLDYLAGGLDRFGLGSRVV-V-TSRDRQVFD-----KCRVDKIYEVE 396 (1223)
Q Consensus 340 L~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~~~gsrII-i-TTR~~~v~~-----~~~~~~~~~l~ 396 (1223)
.++-++.|++|.++.. ..+..+.-..+.++...-|| + .|-..+|+. --..+..+.++
T Consensus 239 kk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~ 318 (596)
T COG0465 239 KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVE 318 (596)
T ss_pred hccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecC
Confidence 4566789999877542 12566666666666333233 2 333333332 22346677788
Q ss_pred CCCHHHHHHHHHHhhhc
Q 000922 397 GLNQNEALEHFSNYAFR 413 (1223)
Q Consensus 397 ~L~~~ea~~Lf~~~af~ 413 (1223)
..+-....+.+.-|+-.
T Consensus 319 ~PDi~gRe~IlkvH~~~ 335 (596)
T COG0465 319 LPDIKGREQILKVHAKN 335 (596)
T ss_pred CcchhhHHHHHHHHhhc
Confidence 77777788888866643
No 457
>PRK13975 thymidylate kinase; Provisional
Probab=91.61 E-value=0.15 Score=53.87 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhh
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998754
No 458
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.55 E-value=0.14 Score=52.95 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
+.|.|+|+.|.||||+|+.+....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999999875
No 459
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.54 E-value=0.15 Score=50.26 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHHh
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
+|.|-|.+|.||||+|+.+++...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998653
No 460
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.52 E-value=0.15 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
+++|+|+.|+|||||+.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58899999999999999999987765
No 461
>PRK14530 adenylate kinase; Provisional
Probab=91.51 E-value=0.15 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
.|.|+|++|.||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 462
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.49 E-value=0.54 Score=50.05 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=39.3
Q ss_pred hHHHHHHHhcCeEEEEecCC----CC--HHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCceEEec
Q 000922 333 PKCIKERLQQMKVFVVLDDV----NK--PEQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKIYEVE 396 (1223)
Q Consensus 333 ~~~l~~~L~~kr~LlVLDdv----~~--~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~l~ 396 (1223)
.-.+.+.|-..+-+|+.|+= +. .+.+-.+...+. ...|..||+.|-|..++..+ ++++.+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 45677778889999999953 22 233333333221 13477899999999998864 4555554
No 463
>PHA02244 ATPase-like protein
Probab=91.49 E-value=0.47 Score=54.17 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCceehhhHHH----HHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhh
Q 000922 240 EGLVGIYSRIE----QIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 240 ~~~vGr~~~~~----~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
..++|....+. .+..++..+ .-|.|+|++|+|||+||++++.....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34666554443 334444322 23678999999999999999987543
No 464
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=91.48 E-value=0.5 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQ 286 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~ 286 (1223)
-.+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998864
No 465
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.48 E-value=0.17 Score=53.27 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 466
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=0.22 Score=53.45 Aligned_cols=54 Identities=30% Similarity=0.410 Sum_probs=37.3
Q ss_pred CCCceehhhHHHHHHHhhhcC-----------CCCeEEEEEEccCCCchHHHHHHHHHHHhhccC
Q 000922 239 FEGLVGIYSRIEQIKSLLCVG-----------LPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFE 292 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 292 (1223)
..++=|.++.+++|.+..... -...+=|.++|.+|.|||-||++|+|+-+..|-
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 344556666666665544321 122456779999999999999999998776665
No 467
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.47 E-value=0.33 Score=50.26 Aligned_cols=118 Identities=16% Similarity=0.054 Sum_probs=59.9
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHh----hhc--cCcCCC-C---
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEIL----EET--LKIRTP-S--- 331 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~----~~~--~~~~~~-~--- 331 (1223)
....|-|+|-.|-||||.|..++-+...+=-.+.++.=.+. ....+-....+.+ ..+. +.. ....+. +
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg-~~~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKG-AWSTGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC-CCccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHH
Confidence 34688999999999999999998876554333333322211 1112222222221 0000 000 000000 0
Q ss_pred ----chHHHHHHHhc-CeEEEEecCCCCHHH-----HHHHhcCCCCCCCCCEEEEEeCCh
Q 000922 332 ----VPKCIKERLQQ-MKVFVVLDDVNKPEQ-----LDYLAGGLDRFGLGSRVVVTSRDR 381 (1223)
Q Consensus 332 ----~~~~l~~~L~~-kr~LlVLDdv~~~~~-----~~~l~~~~~~~~~gsrIIiTTR~~ 381 (1223)
.....++.+.. +-=|+|||.+-..-. .+.+...+....++..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 02233444444 445999999844221 333333333345677999999985
No 468
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=91.42 E-value=0.2 Score=55.35 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=26.5
Q ss_pred HHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHH
Q 000922 251 QIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQ 286 (1223)
Q Consensus 251 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 286 (1223)
.|-++|..+-..-.+.=|+|.+|+|||+||..++-.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 455556333233468899999999999999988754
No 469
>PLN02674 adenylate kinase
Probab=91.40 E-value=0.73 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
..|.|.|++|.||||+|+.++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999988754
No 470
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.38 E-value=0.41 Score=54.52 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.7
Q ss_pred CCCeEEEEEEccCCCchHHHHHHHHHHHhhc
Q 000922 260 LPDFQIIGIWGMGGIGKTTIAGAIFNQISND 290 (1223)
Q Consensus 260 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 290 (1223)
.....+|+|.|.+|+|||||+..+...+..+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3457899999999999999999998877654
No 471
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.34 E-value=0.34 Score=50.73 Aligned_cols=33 Identities=24% Similarity=0.093 Sum_probs=25.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
++.|.|.+|+|||+||..+.......=..++|+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~ 33 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYV 33 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 367999999999999999887655444556666
No 472
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.34 E-value=0.52 Score=48.44 Aligned_cols=79 Identities=14% Similarity=0.070 Sum_probs=43.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCCCc----hHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTPSV----PKCIKERL 340 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~----~~~l~~~L 340 (1223)
++.|.|.+|.||||+|..+..+... ...|+... ...-.++++++..............+. ...+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~iat~-----~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIATA-----QPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCcCC-----CCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 6889999999999999999876422 23455321 122334555554444333222222222 22232222
Q ss_pred hcCeEEEEecCC
Q 000922 341 QQMKVFVVLDDV 352 (1223)
Q Consensus 341 ~~kr~LlVLDdv 352 (1223)
. +.-++++|.+
T Consensus 75 ~-~~~~VlID~L 85 (170)
T PRK05800 75 A-PGRCVLVDCL 85 (170)
T ss_pred C-CCCEEEehhH
Confidence 2 2337888986
No 473
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.30 E-value=0.24 Score=59.11 Aligned_cols=92 Identities=24% Similarity=0.232 Sum_probs=49.8
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhc-cCcceeeeechhhhccCCHHHHHHHHHHHHhhhccCcCCC------CchHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISND-FEGRCFMANVREESERGGLVYLRERLYSEILEETLKIRTP------SVPKCI 336 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~------~~~~~l 336 (1223)
..++|+|.+|.|||||++.+++.+... -+..+++.-+.+... .+..+.+.+-.++.....+.... ...-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpe--EVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPE--EVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchh--hHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999977543 344444544433222 12223222211111111110000 001123
Q ss_pred HHHH--hcCeEEEEecCCCCHHH
Q 000922 337 KERL--QQMKVFVVLDDVNKPEQ 357 (1223)
Q Consensus 337 ~~~L--~~kr~LlVLDdv~~~~~ 357 (1223)
.+++ +++.|||++|++.....
T Consensus 495 Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHHHH
Confidence 3344 58899999999976544
No 474
>CHL00206 ycf2 Ycf2; Provisional
Probab=91.27 E-value=2 Score=58.39 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
.+=|.++|++|.|||.||++++...
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 4678899999999999999999863
No 475
>PLN02318 phosphoribulokinase/uridine kinase
Probab=91.27 E-value=0.23 Score=59.77 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=26.6
Q ss_pred hhcCCCCeEEEEEEccCCCchHHHHHHHHHHH
Q 000922 256 LCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 256 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
+....+++.+|+|.|..|.||||||+.+...+
T Consensus 58 L~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 58 LAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 33345578999999999999999999998764
No 476
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.26 E-value=0.23 Score=52.00 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHH
Q 000922 239 FEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFN 285 (1223)
Q Consensus 239 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 285 (1223)
..+++|-+.....++-... +.+-+.++|.+|+|||++|+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHH
Confidence 4567888877766655442 346889999999999999999886
No 477
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.25 E-value=0.4 Score=53.30 Aligned_cols=58 Identities=29% Similarity=0.228 Sum_probs=44.7
Q ss_pred CCCCCCCceehhhHHHH---HHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccC
Q 000922 235 FSSDFEGLVGIYSRIEQ---IKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFE 292 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 292 (1223)
+-...+.+||-....+. +.++...+.-.-+.|.|+|++|.|||+||..+.+.+...-+
T Consensus 34 ~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 34 AKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 34567889998776654 45566555555689999999999999999999998876544
No 478
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.24 E-value=0.16 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.117 Sum_probs=20.7
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFN 285 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~ 285 (1223)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999984
No 479
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=0.51 Score=53.04 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHHHHhhccCCCCCCCCCCceehhhHHHHHHHhhhcCC----------CCeEEEEEEccCCCchHHHHHH
Q 000922 213 RPEAKLVDEIIEDILKKLKDKSFSSDFEGLVGIYSRIEQIKSLLCVGL----------PDFQIIGIWGMGGIGKTTIAGA 282 (1223)
Q Consensus 213 ~~e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~----------~~~~vv~I~G~gGiGKTtLA~~ 282 (1223)
.+++.+++-+-.+|...- +-..-+++.|..+..+-|++.....- .-=+-|..+|++|.|||-||++
T Consensus 189 ~~d~~Lve~lerdIl~~n----p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKA 264 (491)
T KOG0738|consen 189 GYDADLVEALERDILQRN----PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKA 264 (491)
T ss_pred cchHHHHHHHHHHHhccC----CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHH
Confidence 455555555555555432 22333677888777766665443211 1235688999999999999999
Q ss_pred HHHHHhh
Q 000922 283 IFNQISN 289 (1223)
Q Consensus 283 v~~~~~~ 289 (1223)
||.+-..
T Consensus 265 vATEc~t 271 (491)
T KOG0738|consen 265 VATECGT 271 (491)
T ss_pred HHHhhcC
Confidence 9987553
No 480
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.23 E-value=0.35 Score=60.14 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=44.0
Q ss_pred CCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhc-cCcceeeeec
Q 000922 238 DFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISND-FEGRCFMANV 300 (1223)
Q Consensus 238 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~ 300 (1223)
-.++++|.++.++.+...+... +.+.++|++|+||||+|+++.+.+... |...+++.|.
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 3457889998888888777543 356699999999999999999977554 4555566543
No 481
>PLN02459 probable adenylate kinase
Probab=91.20 E-value=0.56 Score=51.27 Aligned_cols=90 Identities=24% Similarity=0.318 Sum_probs=46.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHHhhccCcceeeee---chhh-hccCCHHHHHHHHHHHHhhhccCcCCCCchHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMAN---VREE-SERGGLVYLRERLYSEILEETLKIRTPSVPKCIKERL 340 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~-~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 340 (1223)
.+.|.|++|.||||+|+.+...+. |. ++.. ++.. ..... +.++ +........-.++.-....+++++
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~--~~---~is~gdllR~ei~~~t~---lg~~-i~~~~~~G~lVPdeiv~~ll~~~l 101 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG--VP---HIATGDLVREEIKSSGP---LGAQ-LKEIVNQGKLVPDEIIFSLLSKRL 101 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--Cc---EEeCcHHHHHHHhccch---hHHH-HHHHHHcCCccCHHHHHHHHHHHH
Confidence 367789999999999999988642 22 2211 1111 11111 1111 112222211122222266677777
Q ss_pred hc----CeEEEEecCCC-CHHHHHHHhc
Q 000922 341 QQ----MKVFVVLDDVN-KPEQLDYLAG 363 (1223)
Q Consensus 341 ~~----kr~LlVLDdv~-~~~~~~~l~~ 363 (1223)
.. .+-=+|||+.- +..|.+.|-.
T Consensus 102 ~~~~~~~~~g~iLDGFPRt~~Qa~~Le~ 129 (261)
T PLN02459 102 EAGEEEGESGFILDGFPRTVRQAEILEG 129 (261)
T ss_pred hcccccCCceEEEeCCCCCHHHHHHHHh
Confidence 53 24568999994 5667666643
No 482
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.17 E-value=0.56 Score=59.08 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEEEccCCCchHHHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFN 285 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~ 285 (1223)
..|+|+|..|.|||||||.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998864
No 483
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=91.16 E-value=0.41 Score=54.18 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=37.5
Q ss_pred hHHHHHHHhcCeEEEEecCCCCHH---HHHHHhcCCCCC--CCCCEEEEEeCChhhhhhcCCCceE
Q 000922 333 PKCIKERLQQMKVFVVLDDVNKPE---QLDYLAGGLDRF--GLGSRVVVTSRDRQVFDKCRVDKIY 393 (1223)
Q Consensus 333 ~~~l~~~L~~kr~LlVLDdv~~~~---~~~~l~~~~~~~--~~gsrIIiTTR~~~v~~~~~~~~~~ 393 (1223)
...|...+..+.=+++.|.....- ....++..+... ..|+.+++.|+.+++.+.+..+..+
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 556777788888889999875421 111122211111 2577888888888888877555443
No 484
>PRK05973 replicative DNA helicase; Provisional
Probab=91.16 E-value=0.51 Score=51.01 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=28.6
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceee
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFM 297 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 297 (1223)
..-.++.|.|.+|+|||++|..+......+-..++|+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyf 98 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFF 98 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3446899999999999999999887655454445565
No 485
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=91.15 E-value=0.47 Score=55.70 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCchHHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQ 286 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~ 286 (1223)
-+-.||+|.+|.||||+.+.++.+
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcC
Confidence 467899999999999999999974
No 486
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.14 E-value=0.14 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998853
No 487
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.11 E-value=0.28 Score=49.19 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=29.1
Q ss_pred CeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 262 DFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 262 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
...+|-..|.+|.||||||.+++.++..+--. +++.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~-~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYH-VYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCe-EEEe
Confidence 45799999999999999999999988766543 3443
No 488
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.09 E-value=0.49 Score=45.97 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=13.6
Q ss_pred cccccCccceeeeccccccccCcc-ccccCCcccEEeecC
Q 000922 745 SIECLTKLEELDLAYCRRLKSLPS-SICKLKSLHLLCLYN 783 (1223)
Q Consensus 745 ~i~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~L~~ 783 (1223)
.+.++++|+.+.+.. .+..++. .+.++++|+.+.+.+
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 344555566665553 2223322 244444555555544
No 489
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=90.98 E-value=0.2 Score=51.39 Aligned_cols=45 Identities=24% Similarity=0.267 Sum_probs=31.1
Q ss_pred ceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHH
Q 000922 242 LVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQ 286 (1223)
Q Consensus 242 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 286 (1223)
+||....++++.+.+..-...-.-|.|+|..|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467777777777666442222245669999999999999999983
No 490
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=90.94 E-value=3.1 Score=45.79 Aligned_cols=159 Identities=14% Similarity=0.169 Sum_probs=85.1
Q ss_pred CCCCCCCceehhhHHHHHHHhhhcCCCCeEEEEEEccCCCchHHHHHHHHHHHhhccCcceeeeechhhhccCCHHHHHH
Q 000922 235 FSSDFEGLVGIYSRIEQIKSLLCVGLPDFQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMANVREESERGGLVYLRE 314 (1223)
Q Consensus 235 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~l~~l~~ 314 (1223)
+....+.|+|-..- +++...+......-+.+.|+|+.|+|||+-++.+++.. + ..|+. +.+..+....++.
T Consensus 67 ~~~~~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~----p-~~~l~---~~~p~~~a~~~i~ 137 (297)
T COG2842 67 LEKLAPDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN----P-NALLI---EADPSYTALVLIL 137 (297)
T ss_pred cccccccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC----c-cceee---cCChhhHHHHHHH
Confidence 33456778876543 23333333333334589999999999999999988853 2 23332 2334444444554
Q ss_pred HHHHHHhhhccCcCCCCchHHHHHHHhcCeEEEEecCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCCCce
Q 000922 315 RLYSEILEETLKIRTPSVPKCIKERLQQMKVFVVLDDVNKP--EQLDYLAGGLDRFGLGSRVVVTSRDRQVFDKCRVDKI 392 (1223)
Q Consensus 315 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~ 392 (1223)
.+............ .+....+..++++..=+++.|..+.. ..++.+.......|-| ++.. |....
T Consensus 138 ~i~~~~~~~~~~~~-~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~--~vLv----------G~prL 204 (297)
T COG2842 138 IICAAAFGATDGTI-NDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG--VVLV----------GMPRL 204 (297)
T ss_pred HHHHHHhcccchhH-HHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCce--EEEe----------cChHH
Confidence 44444333222211 11245556667888889999988763 3455554443322222 2211 11111
Q ss_pred EEecCCCHHHHHHHHHHhhhcCC
Q 000922 393 YEVEGLNQNEALEHFSNYAFRQN 415 (1223)
Q Consensus 393 ~~l~~L~~~ea~~Lf~~~af~~~ 415 (1223)
...-.=+..+..++|++..++..
T Consensus 205 ~~~l~~~~~~~~rl~srv~v~~~ 227 (297)
T COG2842 205 FKVLRRPEDELSRLYSRVRVGKL 227 (297)
T ss_pred HhccccchHHHHHHHHHhhhHhh
Confidence 11222244567788888877643
No 491
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=90.93 E-value=0.67 Score=48.93 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHH
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
-.+++|.|..|.|||||.+.++...
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998644
No 492
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.92 E-value=0.54 Score=45.64 Aligned_cols=96 Identities=22% Similarity=0.301 Sum_probs=40.4
Q ss_pred CccEEEccCCCcccccc-cccccCccceeeeccccccccCcc-ccccCCcccEEeecCCcCcccchhhhcccccceeeec
Q 000922 728 NVIELDLKGTAIEEIPS-SIECLTKLEELDLAYCRRLKSLPS-SICKLKSLHLLCLYNCSNFEIFPEILEKMECLEYIDL 805 (1223)
Q Consensus 728 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~L~~c~~~~~~p~~l~~l~~L~~L~L 805 (1223)
+|+.+.+.. .++.++. .+..+++|+.+.+.++ +..++. .+.++++|+.+.+.+ .....-...+..+++|+.+.+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 566666654 4556655 4566667777777652 444433 245555677776654 222222334455666666666
Q ss_pred CCCCccccccc-cccCCCCcEEEcc
Q 000922 806 ESTAVKELPSS-VEQLKGLRELILE 829 (1223)
Q Consensus 806 ~~n~l~~lp~~-i~~l~~L~~L~L~ 829 (1223)
..+ +..++.. +.+. +|+.+.+.
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-T
T ss_pred Ccc-ccEEchhhhcCC-CceEEEEC
Confidence 543 4444332 3333 44444443
No 493
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=90.90 E-value=0.14 Score=53.62 Aligned_cols=21 Identities=24% Similarity=0.072 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 000922 265 IIGIWGMGGIGKTTIAGAIFN 285 (1223)
Q Consensus 265 vv~I~G~gGiGKTtLA~~v~~ 285 (1223)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999984
No 494
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=90.89 E-value=0.28 Score=57.82 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.6
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhh
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISN 289 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 289 (1223)
+-|.++|++|+|||++|+.++.....
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 56889999999999999999986543
No 495
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.89 E-value=0.12 Score=30.71 Aligned_cols=13 Identities=46% Similarity=0.657 Sum_probs=4.0
Q ss_pred CcEEeCCCCCCcc
Q 000922 916 LEILDISGNDFDS 928 (1223)
Q Consensus 916 L~~L~Ls~n~l~~ 928 (1223)
|+.|+|++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3444444444333
No 496
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=90.84 E-value=0.26 Score=54.69 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=29.1
Q ss_pred EEEEEEccCCCchHHHHHHHHHHHhhccCcceeee
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCFMA 298 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 298 (1223)
++|+|+|.+|+|||||+..+...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5899999999999999999999988886 455553
No 497
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=90.83 E-value=0.18 Score=52.00 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.5
Q ss_pred EEEEEEccCCCchHHHHHHHHHHH
Q 000922 264 QIIGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 264 ~vv~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
..|.|+|++|.||||+|+.+.+++
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999876
No 498
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=90.83 E-value=0.37 Score=53.86 Aligned_cols=28 Identities=32% Similarity=0.258 Sum_probs=23.9
Q ss_pred CCeEEEEEEccCCCchHHHHHHHHHHHh
Q 000922 261 PDFQIIGIWGMGGIGKTTIAGAIFNQIS 288 (1223)
Q Consensus 261 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 288 (1223)
....+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999998876554
No 499
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=90.76 E-value=0.16 Score=51.92 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEEccCCCchHHHHHHHHHHH
Q 000922 266 IGIWGMGGIGKTTIAGAIFNQI 287 (1223)
Q Consensus 266 v~I~G~gGiGKTtLA~~v~~~~ 287 (1223)
|.|+|++|.||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 500
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=90.72 E-value=0.17 Score=52.97 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=28.8
Q ss_pred eEEEEEEccCCCchHHHHHHHHHHHhhccCccee
Q 000922 263 FQIIGIWGMGGIGKTTIAGAIFNQISNDFEGRCF 296 (1223)
Q Consensus 263 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 296 (1223)
.|+|.|+|+.|+|||||++++......+|...+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccccccee
Confidence 3689999999999999999999988888854333
Done!