Query 000923
Match_columns 1222
No_of_seqs 723 out of 4367
Neff 6.8
Searched_HMMs 46136
Date Tue Apr 2 00:49:18 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1144 Translation initiation 100.0 2E-155 3E-160 1342.7 58.3 595 625-1222 468-1064(1064)
2 TIGR00491 aIF-2 translation in 100.0 5E-102 1E-106 944.6 56.8 575 629-1217 1-580 (590)
3 PRK04004 translation initiatio 100.0 3.9E-99 9E-104 923.6 57.4 577 628-1218 2-583 (586)
4 PRK14845 translation initiatio 100.0 3.3E-99 7E-104 953.3 56.1 564 635-1215 468-1036(1049)
5 COG0532 InfB Translation initi 100.0 1.1E-94 2.5E-99 838.0 45.4 500 629-1197 2-508 (509)
6 KOG1145 Mitochondrial translat 100.0 9.5E-86 2.1E-90 749.2 38.8 479 629-1191 150-671 (683)
7 TIGR00487 IF-2 translation ini 100.0 1.7E-79 3.7E-84 748.7 43.2 475 628-1191 83-581 (587)
8 PRK05306 infB translation init 100.0 4.2E-79 9.1E-84 759.1 46.7 472 629-1190 287-782 (787)
9 CHL00189 infB translation init 100.0 1.5E-77 3.2E-82 738.7 43.4 476 629-1190 241-736 (742)
10 COG5256 TEF1 Translation elong 100.0 2.7E-31 5.9E-36 300.1 22.1 260 632-952 7-316 (428)
11 PTZ00141 elongation factor 1- 100.0 8.3E-30 1.8E-34 305.0 22.7 259 633-951 8-317 (446)
12 KOG0462 Elongation factor-type 100.0 2.6E-30 5.5E-35 297.1 17.1 257 628-950 58-332 (650)
13 PRK10512 selenocysteinyl-tRNA- 100.0 2.8E-29 6E-34 310.0 25.3 251 633-951 1-259 (614)
14 PRK12736 elongation factor Tu; 100.0 3.8E-29 8.2E-34 296.2 25.3 257 632-951 12-296 (394)
15 TIGR01394 TypA_BipA GTP-bindin 100.0 1.9E-29 4.1E-34 310.0 23.0 257 630-947 1-285 (594)
16 PLN00043 elongation factor 1-a 100.0 2.6E-29 5.7E-34 300.5 23.1 258 633-950 8-316 (447)
17 TIGR00475 selB selenocysteine- 100.0 5.1E-29 1.1E-33 307.0 25.8 254 633-952 1-261 (581)
18 COG0050 TufB GTPases - transla 100.0 4.1E-29 9E-34 268.1 19.0 257 633-952 13-297 (394)
19 KOG0460 Mitochondrial translat 100.0 2.9E-29 6.3E-34 273.7 17.1 259 632-953 54-342 (449)
20 PLN03127 Elongation factor Tu; 100.0 2E-28 4.4E-33 292.6 25.6 259 631-950 60-348 (447)
21 COG0480 FusA Translation elong 100.0 6.9E-29 1.5E-33 305.8 21.5 294 627-950 7-392 (697)
22 PLN03126 Elongation factor Tu; 100.0 2.2E-28 4.7E-33 293.7 24.8 257 632-951 81-375 (478)
23 PRK12735 elongation factor Tu; 100.0 3E-28 6.6E-33 288.7 25.3 255 633-950 13-297 (396)
24 PTZ00327 eukaryotic translatio 100.0 2.1E-28 4.5E-33 291.8 23.6 266 630-934 32-328 (460)
25 CHL00071 tufA elongation facto 100.0 3.5E-28 7.6E-33 289.3 24.8 254 633-949 13-304 (409)
26 PRK00049 elongation factor Tu; 100.0 4.7E-28 1E-32 286.9 25.2 255 633-950 13-297 (396)
27 TIGR00485 EF-Tu translation el 100.0 3.9E-28 8.5E-33 287.8 24.4 249 631-939 11-284 (394)
28 PRK10218 GTP-binding protein; 100.0 2.1E-28 4.6E-33 300.3 22.0 258 629-947 4-289 (607)
29 COG1217 TypA Predicted membran 100.0 2.8E-28 6E-33 275.2 19.4 259 628-947 3-289 (603)
30 COG0481 LepA Membrane GTPase L 100.0 2.5E-28 5.3E-33 276.5 18.9 336 627-1067 6-380 (603)
31 PRK12317 elongation factor 1-a 100.0 5.5E-28 1.2E-32 289.7 21.8 247 632-939 6-297 (425)
32 COG3276 SelB Selenocysteine-sp 100.0 2.7E-27 5.8E-32 269.7 22.3 248 634-952 2-256 (447)
33 TIGR00483 EF-1_alpha translati 100.0 3.7E-27 8.1E-32 282.5 22.7 257 633-950 8-310 (426)
34 PRK00741 prfC peptide chain re 99.9 2.3E-27 5E-32 288.3 19.3 279 628-948 8-378 (526)
35 PRK05433 GTP-binding protein L 99.9 6.7E-27 1.5E-31 288.6 21.6 213 628-893 5-232 (600)
36 PRK12739 elongation factor G; 99.9 1.1E-26 2.4E-31 293.0 22.4 284 629-947 7-388 (691)
37 KOG0465 Mitochondrial elongati 99.9 2.7E-27 5.9E-32 274.7 14.5 289 627-947 36-418 (721)
38 TIGR02034 CysN sulfate adenyly 99.9 2.8E-26 6.2E-31 272.6 23.2 237 634-933 2-281 (406)
39 TIGR01393 lepA GTP-binding pro 99.9 1.3E-26 2.8E-31 285.8 20.9 212 629-893 2-228 (595)
40 PRK00007 elongation factor G; 99.9 2.5E-26 5.3E-31 289.7 23.7 286 627-947 7-391 (693)
41 TIGR00484 EF-G translation elo 99.9 3E-26 6.6E-31 289.2 23.7 286 627-947 7-389 (689)
42 PRK13351 elongation factor G; 99.9 7.9E-26 1.7E-30 286.0 23.3 282 629-948 7-388 (687)
43 TIGR03680 eif2g_arch translati 99.9 1.1E-25 2.5E-30 267.6 22.8 262 632-933 4-289 (406)
44 PRK05124 cysN sulfate adenylyl 99.9 1.9E-25 4E-30 269.6 22.9 241 631-933 26-309 (474)
45 COG5258 GTPBP1 GTPase [General 99.9 2.4E-25 5.1E-30 246.3 21.5 280 633-950 118-435 (527)
46 TIGR00503 prfC peptide chain r 99.9 3.5E-25 7.7E-30 269.3 24.9 281 628-947 9-378 (527)
47 COG2895 CysN GTPases - Sulfate 99.9 1.7E-25 3.7E-30 246.4 17.3 227 631-906 5-273 (431)
48 PRK07560 elongation factor EF- 99.9 1.9E-25 4.2E-30 283.1 20.6 281 627-948 17-373 (731)
49 PRK04000 translation initiatio 99.9 6.9E-25 1.5E-29 260.8 23.2 261 631-931 8-292 (411)
50 KOG0458 Elongation factor 1 al 99.9 1.2E-24 2.6E-29 253.8 22.1 218 631-893 176-444 (603)
51 PF00009 GTP_EFTU: Elongation 99.9 3.5E-25 7.6E-30 236.5 13.6 165 633-842 4-187 (188)
52 PRK05506 bifunctional sulfate 99.9 2.2E-24 4.8E-29 270.1 21.7 213 633-892 25-279 (632)
53 PRK12740 elongation factor G; 99.9 4.3E-24 9.2E-29 269.8 23.2 277 638-947 1-370 (668)
54 KOG0461 Selenocysteine-specifi 99.9 2.7E-23 5.8E-28 226.9 18.2 246 632-931 7-264 (522)
55 COG4108 PrfC Peptide chain rel 99.9 4.4E-23 9.6E-28 232.7 18.7 283 633-949 13-381 (528)
56 TIGR00490 aEF-2 translation el 99.9 1.8E-23 3.8E-28 264.6 17.5 276 629-947 18-371 (720)
57 PLN00116 translation elongatio 99.9 5E-23 1.1E-27 264.0 21.1 132 627-760 16-163 (843)
58 COG5257 GCD11 Translation init 99.9 7.1E-23 1.5E-27 223.0 15.5 223 632-891 10-256 (415)
59 cd01884 EF_Tu EF-Tu subfamily. 99.9 7.8E-23 1.7E-27 219.6 14.5 154 633-832 3-173 (195)
60 KOG0464 Elongation factor G [T 99.9 1.4E-23 3E-28 232.5 6.8 290 625-950 32-419 (753)
61 cd01886 EF-G Elongation factor 99.9 1.5E-22 3.2E-27 227.8 14.3 194 634-843 1-269 (270)
62 PTZ00416 elongation factor 2; 99.9 7.7E-22 1.7E-26 252.6 20.0 126 627-760 16-157 (836)
63 KOG0463 GTP-binding protein GP 99.9 9E-23 1.9E-27 224.2 9.3 286 633-952 134-456 (641)
64 cd04168 TetM_like Tet(M)-like 99.9 3.9E-22 8.4E-27 220.6 13.3 187 634-843 1-236 (237)
65 KOG0459 Polypeptide release fa 99.9 2.6E-21 5.7E-26 216.2 15.5 264 630-954 77-392 (501)
66 cd04169 RF3 RF3 subfamily. Pe 99.9 3.5E-21 7.6E-26 216.5 13.8 208 630-843 2-266 (267)
67 PF11987 IF-2: Translation-ini 99.8 9.2E-22 2E-26 189.9 7.5 92 975-1072 14-108 (108)
68 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.3E-20 2.7E-25 196.0 15.8 165 633-841 1-165 (168)
69 cd01888 eIF2_gamma eIF2-gamma 99.8 2E-20 4.3E-25 202.6 14.4 177 634-843 2-200 (203)
70 KOG1143 Predicted translation 99.8 2.1E-20 4.6E-25 205.9 14.4 282 634-952 169-491 (591)
71 cd04166 CysN_ATPS CysN_ATPS su 99.8 8.7E-21 1.9E-25 206.1 10.9 172 635-853 2-205 (208)
72 cd01889 SelB_euk SelB subfamil 99.8 4.2E-20 9.2E-25 197.9 15.5 181 634-845 2-189 (192)
73 cd04165 GTPBP1_like GTPBP1-lik 99.8 3.1E-20 6.7E-25 203.7 14.0 184 635-839 2-220 (224)
74 cd01883 EF1_alpha Eukaryotic e 99.8 1.6E-20 3.5E-25 205.6 11.8 174 634-851 1-214 (219)
75 cd04171 SelB SelB subfamily. 99.8 1.1E-19 2.3E-24 187.9 16.0 158 634-839 2-163 (164)
76 cd01885 EF2 EF2 (for archaea a 99.8 6.7E-20 1.5E-24 200.4 12.9 121 634-760 2-138 (222)
77 cd04170 EF-G_bact Elongation f 99.8 9.8E-20 2.1E-24 205.5 13.7 208 634-843 1-267 (268)
78 cd01890 LepA LepA subfamily. 99.8 1E-19 2.2E-24 191.7 11.9 160 635-842 3-177 (179)
79 cd01891 TypA_BipA TypA (tyrosi 99.8 4.1E-19 9E-24 190.6 13.0 156 630-833 2-173 (194)
80 COG1159 Era GTPase [General fu 99.8 4.6E-18 1E-22 187.2 19.2 161 629-842 3-172 (298)
81 cd00881 GTP_translation_factor 99.8 1.2E-18 2.6E-23 184.3 13.3 170 635-842 2-187 (189)
82 cd03703 aeIF5B_II aeIF5B_II: T 99.8 1.7E-18 3.7E-23 165.4 10.5 108 855-962 1-108 (110)
83 PRK15494 era GTPase Era; Provi 99.8 1.3E-17 2.7E-22 194.2 19.7 215 630-901 50-300 (339)
84 TIGR00436 era GTP-binding prot 99.8 3E-17 6.5E-22 185.5 20.4 154 634-842 2-164 (270)
85 cd04167 Snu114p Snu114p subfam 99.8 3.8E-18 8.3E-23 186.0 12.1 171 635-831 3-192 (213)
86 PRK00089 era GTPase Era; Revie 99.7 6.5E-17 1.4E-21 184.9 20.9 161 629-842 2-171 (292)
87 PF02421 FeoB_N: Ferrous iron 99.7 7.5E-18 1.6E-22 173.3 9.3 147 634-837 2-156 (156)
88 cd04124 RabL2 RabL2 subfamily. 99.7 6.9E-17 1.5E-21 167.9 15.7 154 634-842 2-158 (161)
89 cd01894 EngA1 EngA1 subfamily. 99.7 4.1E-17 8.9E-22 167.1 12.9 147 636-840 1-156 (157)
90 cd01864 Rab19 Rab19 subfamily. 99.7 5.8E-17 1.3E-21 168.7 12.8 158 632-840 3-164 (165)
91 TIGR03594 GTPase_EngA ribosome 99.7 1.9E-16 4.1E-21 190.6 18.9 162 631-842 171-344 (429)
92 TIGR03598 GTPase_YsxC ribosome 99.7 1.3E-16 2.9E-21 169.0 15.5 153 626-831 12-179 (179)
93 KOG0466 Translation initiation 99.7 1.6E-17 3.4E-22 179.5 8.1 227 629-891 35-295 (466)
94 COG1160 Predicted GTPases [Gen 99.7 6.4E-17 1.4E-21 187.2 13.4 152 633-842 4-165 (444)
95 PRK00093 GTP-binding protein D 99.7 3.7E-16 8E-21 188.5 19.8 160 632-842 173-344 (435)
96 cd04113 Rab4 Rab4 subfamily. 99.7 1.5E-16 3.3E-21 164.6 13.1 154 634-839 2-159 (161)
97 cd01861 Rab6 Rab6 subfamily. 99.7 1.7E-16 3.7E-21 164.0 13.2 155 634-840 2-160 (161)
98 cd01897 NOG NOG1 is a nucleola 99.7 2.5E-16 5.4E-21 164.0 14.5 151 633-840 1-166 (168)
99 cd04106 Rab23_lke Rab23-like s 99.7 2.4E-16 5.2E-21 163.0 13.3 156 634-839 2-160 (162)
100 cd04154 Arl2 Arl2 subfamily. 99.7 2E-16 4.3E-21 166.4 12.7 154 631-838 13-171 (173)
101 cd01862 Rab7 Rab7 subfamily. 99.7 3.2E-16 6.9E-21 163.6 14.2 158 634-842 2-167 (172)
102 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.3E-16 2.9E-21 165.9 10.8 154 635-839 2-166 (167)
103 cd04145 M_R_Ras_like M-Ras/R-R 99.7 2.3E-16 5E-21 163.3 12.5 156 633-841 3-163 (164)
104 PRK03003 GTP-binding protein D 99.7 7.2E-16 1.6E-20 187.4 18.6 161 631-842 210-382 (472)
105 cd01895 EngA2 EngA2 subfamily. 99.7 4E-16 8.7E-21 162.0 14.1 160 632-840 2-173 (174)
106 cd04119 RJL RJL (RabJ-Like) su 99.7 3.4E-16 7.4E-21 162.1 13.5 155 634-840 2-165 (168)
107 smart00175 RAB Rab subfamily o 99.7 4.2E-16 9.2E-21 161.1 14.0 156 634-841 2-161 (164)
108 cd04114 Rab30 Rab30 subfamily. 99.7 3.7E-16 8.1E-21 162.9 13.4 158 631-840 6-167 (169)
109 KOG0469 Elongation factor 2 [T 99.7 2.1E-16 4.6E-21 179.6 12.1 131 628-760 17-163 (842)
110 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 5.6E-16 1.2E-20 167.3 14.8 160 634-843 2-169 (201)
111 cd01867 Rab8_Rab10_Rab13_like 99.7 4.1E-16 8.8E-21 162.9 12.8 157 633-841 4-164 (167)
112 cd04151 Arl1 Arl1 subfamily. 99.7 4.9E-16 1.1E-20 160.7 13.3 151 635-839 2-157 (158)
113 cd01866 Rab2 Rab2 subfamily. 99.7 5.1E-16 1.1E-20 162.4 13.4 157 633-841 5-165 (168)
114 COG1160 Predicted GTPases [Gen 99.7 9.9E-16 2.2E-20 177.4 16.9 163 631-842 177-351 (444)
115 cd01879 FeoB Ferrous iron tran 99.7 2.8E-16 6.1E-21 161.4 11.2 147 637-840 1-155 (158)
116 PRK03003 GTP-binding protein D 99.7 3.9E-16 8.5E-21 189.7 14.4 153 631-841 37-198 (472)
117 cd04138 H_N_K_Ras_like H-Ras/N 99.7 4.5E-16 9.8E-21 160.2 12.7 154 633-840 2-160 (162)
118 cd04122 Rab14 Rab14 subfamily. 99.7 6.4E-16 1.4E-20 161.2 13.6 156 633-840 3-162 (166)
119 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 6.6E-16 1.4E-20 164.3 13.8 163 632-842 3-170 (183)
120 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 5.7E-16 1.2E-20 161.3 13.1 157 633-841 3-163 (166)
121 TIGR03594 GTPase_EngA ribosome 99.7 4.1E-16 9E-21 187.7 13.7 151 634-842 1-160 (429)
122 smart00173 RAS Ras subfamily o 99.7 3.9E-16 8.5E-21 161.9 11.3 156 634-842 2-162 (164)
123 PRK04213 GTP-binding protein; 99.7 9.5E-16 2.1E-20 165.2 14.7 159 631-842 8-192 (201)
124 cd04120 Rab12 Rab12 subfamily. 99.7 8.3E-16 1.8E-20 166.3 14.1 157 634-841 2-162 (202)
125 cd01860 Rab5_related Rab5-rela 99.7 8.6E-16 1.9E-20 159.0 13.6 157 633-841 2-162 (163)
126 KOG0467 Translation elongation 99.7 3.2E-16 6.9E-21 186.9 11.5 116 627-760 6-137 (887)
127 cd01898 Obg Obg subfamily. Th 99.7 6.8E-16 1.5E-20 160.9 12.7 154 634-840 2-169 (170)
128 PTZ00369 Ras-like protein; Pro 99.6 6.6E-16 1.4E-20 165.1 12.5 162 632-846 5-171 (189)
129 cd01865 Rab3 Rab3 subfamily. 99.6 1.2E-15 2.6E-20 159.1 13.8 157 633-841 2-162 (165)
130 cd04157 Arl6 Arl6 subfamily. 99.6 7.8E-16 1.7E-20 159.0 12.2 152 635-838 2-160 (162)
131 cd04127 Rab27A Rab27a subfamil 99.6 1.3E-15 2.8E-20 160.7 14.0 167 633-841 5-176 (180)
132 cd04126 Rab20 Rab20 subfamily. 99.6 2E-15 4.3E-20 165.3 15.7 190 634-848 2-196 (220)
133 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 1.2E-15 2.6E-20 160.7 13.3 157 632-841 2-163 (172)
134 cd01863 Rab18 Rab18 subfamily. 99.6 1.1E-15 2.3E-20 158.1 12.6 154 634-840 2-160 (161)
135 cd00877 Ran Ran (Ras-related n 99.6 9.3E-16 2E-20 160.5 12.2 154 634-841 2-158 (166)
136 cd04116 Rab9 Rab9 subfamily. 99.6 1.7E-15 3.7E-20 158.4 14.2 155 633-839 6-168 (170)
137 PLN03071 GTP-binding nuclear p 99.6 1.4E-15 3.1E-20 166.6 14.2 158 630-841 11-171 (219)
138 cd01868 Rab11_like Rab11-like. 99.6 1.3E-15 2.9E-20 158.2 13.2 156 633-840 4-163 (165)
139 cd04112 Rab26 Rab26 subfamily. 99.6 1.4E-15 3.1E-20 162.8 13.8 158 634-843 2-164 (191)
140 cd04136 Rap_like Rap-like subf 99.6 9.3E-16 2E-20 158.6 11.9 155 633-840 2-161 (163)
141 cd04175 Rap1 Rap1 subgroup. T 99.6 1.2E-15 2.5E-20 158.6 12.5 156 633-841 2-162 (164)
142 cd04132 Rho4_like Rho4-like su 99.6 3.1E-15 6.7E-20 159.1 15.4 164 634-844 2-169 (187)
143 cd00878 Arf_Arl Arf (ADP-ribos 99.6 9.7E-16 2.1E-20 158.1 11.0 151 635-839 2-157 (158)
144 cd04110 Rab35 Rab35 subfamily. 99.6 1.6E-15 3.4E-20 163.7 13.1 158 632-841 6-166 (199)
145 cd04140 ARHI_like ARHI subfami 99.6 1.5E-15 3.3E-20 158.3 12.4 155 633-840 2-163 (165)
146 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.6E-15 3.5E-20 156.7 12.2 153 635-839 2-159 (160)
147 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 2.7E-15 5.8E-20 158.2 14.0 153 633-839 16-173 (174)
148 TIGR00231 small_GTP small GTP- 99.6 1.5E-15 3.2E-20 153.9 11.6 151 633-837 2-159 (161)
149 cd04115 Rab33B_Rab33A Rab33B/R 99.6 2.8E-15 6E-20 157.2 13.9 159 631-841 1-168 (170)
150 cd00879 Sar1 Sar1 subfamily. 99.6 1.4E-15 3.1E-20 162.1 11.7 167 630-840 17-189 (190)
151 PRK00093 GTP-binding protein D 99.6 1.6E-15 3.4E-20 183.0 13.5 149 633-839 2-159 (435)
152 cd04144 Ras2 Ras2 subfamily. 99.6 2E-15 4.3E-20 161.6 12.8 156 635-843 2-164 (190)
153 cd04149 Arf6 Arf6 subfamily. 99.6 2.7E-15 5.8E-20 157.5 13.5 153 632-838 9-166 (168)
154 cd04159 Arl10_like Arl10-like 99.6 1.9E-15 4.1E-20 154.3 12.1 152 635-839 2-158 (159)
155 COG0218 Predicted GTPase [Gene 99.6 6.8E-15 1.5E-19 154.6 16.2 166 625-842 17-197 (200)
156 PRK00454 engB GTP-binding prot 99.6 7.1E-15 1.5E-19 157.3 16.9 156 631-841 23-193 (196)
157 cd04123 Rab21 Rab21 subfamily. 99.6 2.5E-15 5.5E-20 154.6 12.9 155 634-840 2-160 (162)
158 cd00154 Rab Rab family. Rab G 99.6 3E-15 6.6E-20 152.5 13.3 153 634-838 2-158 (159)
159 cd01878 HflX HflX subfamily. 99.6 3.4E-15 7.3E-20 161.4 14.1 149 633-840 42-203 (204)
160 cd01874 Cdc42 Cdc42 subfamily. 99.6 2.3E-15 4.9E-20 159.1 12.5 167 633-839 2-172 (175)
161 PF14578 GTP_EFTU_D4: Elongati 99.6 6.9E-16 1.5E-20 139.5 7.1 80 1090-1186 2-81 (81)
162 cd04150 Arf1_5_like Arf1-Arf5- 99.6 2.2E-15 4.7E-20 156.6 12.0 151 634-838 2-157 (159)
163 cd04163 Era Era subfamily. Er 99.6 7E-15 1.5E-19 151.1 15.6 157 631-840 2-167 (168)
164 cd04121 Rab40 Rab40 subfamily. 99.6 4E-15 8.7E-20 159.4 13.9 158 632-841 6-166 (189)
165 cd01893 Miro1 Miro1 subfamily. 99.6 5.8E-15 1.3E-19 154.2 14.8 158 634-841 2-163 (166)
166 cd04109 Rab28 Rab28 subfamily. 99.6 3.8E-15 8.1E-20 162.8 13.8 158 634-842 2-166 (215)
167 PRK15467 ethanolamine utilizat 99.6 2.8E-15 6.1E-20 156.0 12.2 143 634-844 3-149 (158)
168 cd04164 trmE TrmE (MnmE, ThdF, 99.6 4.4E-15 9.5E-20 151.9 13.5 146 633-841 2-156 (157)
169 cd04139 RalA_RalB RalA/RalB su 99.6 3.8E-15 8.2E-20 153.9 13.1 155 634-841 2-161 (164)
170 smart00178 SAR Sar1p-like memb 99.6 4.2E-15 9.2E-20 158.3 13.8 162 631-839 16-182 (184)
171 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 5.2E-15 1.1E-19 155.6 14.2 158 634-841 2-164 (170)
172 cd04176 Rap2 Rap2 subgroup. T 99.6 2.9E-15 6.3E-20 155.4 11.8 155 633-840 2-161 (163)
173 cd04134 Rho3 Rho3 subfamily. 99.6 2.8E-15 6.1E-20 160.4 12.0 168 634-841 2-173 (189)
174 smart00177 ARF ARF-like small 99.6 8.1E-15 1.8E-19 154.8 15.2 156 632-841 13-173 (175)
175 PLN00223 ADP-ribosylation fact 99.6 6.2E-15 1.4E-19 156.8 14.3 157 631-841 16-177 (181)
176 PRK09518 bifunctional cytidyla 99.6 5.3E-15 1.2E-19 187.9 16.3 153 632-842 275-436 (712)
177 cd04135 Tc10 TC10 subfamily. 99.6 3E-15 6.4E-20 157.0 11.6 166 634-839 2-171 (174)
178 cd01875 RhoG RhoG subfamily. 99.6 6.3E-15 1.4E-19 158.0 14.1 171 632-842 3-177 (191)
179 PRK09518 bifunctional cytidyla 99.6 6.6E-15 1.4E-19 187.1 16.7 161 632-843 450-622 (712)
180 PLN03110 Rab GTPase; Provision 99.6 7E-15 1.5E-19 160.8 14.5 160 633-844 13-176 (216)
181 KOG0084 GTPase Rab1/YPT1, smal 99.6 7.1E-15 1.5E-19 152.2 13.6 162 631-844 8-174 (205)
182 PLN03118 Rab family protein; P 99.6 7.5E-15 1.6E-19 159.8 14.6 159 631-842 13-177 (211)
183 cd04158 ARD1 ARD1 subfamily. 99.6 4.4E-15 9.4E-20 155.8 12.2 154 635-841 2-160 (169)
184 KOG1423 Ras-like GTPase ERA [C 99.6 1.6E-14 3.4E-19 157.8 16.4 187 627-841 67-270 (379)
185 KOG0092 GTPase Rab5/YPT51 and 99.6 2.8E-15 6.1E-20 154.6 10.0 162 630-843 3-168 (200)
186 TIGR03156 GTP_HflX GTP-binding 99.6 6.4E-15 1.4E-19 172.0 14.2 148 633-840 190-350 (351)
187 cd04147 Ras_dva Ras-dva subfam 99.6 5.4E-15 1.2E-19 159.3 12.6 157 635-842 2-163 (198)
188 TIGR02528 EutP ethanolamine ut 99.6 5.3E-15 1.1E-19 150.1 11.8 135 634-838 2-141 (142)
189 cd04143 Rhes_like Rhes_like su 99.6 4.6E-15 9.9E-20 165.4 12.3 158 634-843 2-172 (247)
190 cd04101 RabL4 RabL4 (Rab-like4 99.6 1E-14 2.2E-19 151.3 14.1 156 634-840 2-162 (164)
191 PTZ00133 ADP-ribosylation fact 99.6 1E-14 2.3E-19 155.2 14.3 159 632-844 17-180 (182)
192 cd04118 Rab24 Rab24 subfamily. 99.6 6.6E-15 1.4E-19 157.5 12.9 161 634-842 2-166 (193)
193 smart00174 RHO Rho (Ras homolo 99.6 7.5E-15 1.6E-19 153.9 13.0 167 635-841 1-171 (174)
194 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.4E-14 2.9E-19 154.4 14.9 160 634-841 2-165 (182)
195 cd04155 Arl3 Arl3 subfamily. 99.6 4.7E-15 1E-19 155.3 11.1 155 630-839 12-172 (173)
196 cd01871 Rac1_like Rac1-like su 99.6 7.4E-15 1.6E-19 155.1 12.7 165 633-839 2-172 (174)
197 smart00176 RAN Ran (Ras-relate 99.6 7.8E-15 1.7E-19 158.5 12.7 150 638-841 1-153 (200)
198 cd01870 RhoA_like RhoA-like su 99.6 6.5E-15 1.4E-19 154.6 11.8 168 633-840 2-173 (175)
199 cd04125 RabA_like RabA-like su 99.6 1.4E-14 3.1E-19 154.5 14.5 159 633-843 1-163 (188)
200 cd04117 Rab15 Rab15 subfamily. 99.6 1.2E-14 2.7E-19 151.1 13.3 155 634-840 2-160 (161)
201 PLN03108 Rab family protein; P 99.6 1.4E-14 3E-19 157.8 14.1 157 633-841 7-167 (210)
202 cd04177 RSR1 RSR1 subgroup. R 99.6 8E-15 1.7E-19 153.3 11.8 157 633-841 2-163 (168)
203 cd04142 RRP22 RRP22 subfamily. 99.6 1.2E-14 2.5E-19 157.0 13.4 157 634-841 2-173 (198)
204 cd00880 Era_like Era (E. coli 99.6 1.2E-14 2.7E-19 147.2 12.6 154 637-840 1-162 (163)
205 cd04133 Rop_like Rop subfamily 99.6 1.5E-14 3.2E-19 153.3 13.5 166 634-841 3-172 (176)
206 cd00157 Rho Rho (Ras homology) 99.6 1.3E-14 2.8E-19 151.2 12.7 165 634-839 2-170 (171)
207 cd04111 Rab39 Rab39 subfamily. 99.6 1.5E-14 3.2E-19 157.7 13.5 161 633-844 3-168 (211)
208 cd04161 Arl2l1_Arl13_like Arl2 99.6 1.2E-14 2.6E-19 152.3 12.3 154 634-838 1-165 (167)
209 cd04137 RheB Rheb (Ras Homolog 99.6 1.2E-14 2.7E-19 153.4 12.1 157 634-843 3-164 (180)
210 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 6.5E-15 1.4E-19 153.9 9.7 109 635-761 2-113 (164)
211 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 3.1E-14 6.8E-19 146.7 14.2 165 628-844 18-187 (221)
212 PRK12299 obgE GTPase CgtA; Rev 99.6 2.9E-14 6.2E-19 165.2 15.7 156 634-842 160-328 (335)
213 cd04146 RERG_RasL11_like RERG/ 99.6 1.2E-14 2.5E-19 151.4 11.1 154 635-841 2-163 (165)
214 COG2229 Predicted GTPase [Gene 99.6 5.1E-14 1.1E-18 144.8 14.8 158 628-840 6-176 (187)
215 PRK11058 GTPase HflX; Provisio 99.6 5.6E-14 1.2E-18 167.7 17.6 152 633-842 198-362 (426)
216 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 3.6E-14 7.9E-19 151.1 14.2 167 633-839 6-177 (182)
217 cd00876 Ras Ras family. The R 99.6 1.9E-14 4E-19 147.9 11.6 154 634-840 1-159 (160)
218 PRK09554 feoB ferrous iron tra 99.6 2E-14 4.3E-19 182.1 14.1 153 632-841 3-167 (772)
219 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 5.6E-14 1.2E-18 154.9 15.9 171 631-841 12-187 (232)
220 TIGR02729 Obg_CgtA Obg family 99.6 2.8E-14 6E-19 165.2 14.1 152 634-841 159-328 (329)
221 PRK12298 obgE GTPase CgtA; Rev 99.5 3.3E-14 7.1E-19 167.9 14.7 158 634-843 161-334 (390)
222 cd04131 Rnd Rnd subfamily. Th 99.5 5.5E-14 1.2E-18 149.2 14.8 113 633-760 2-118 (178)
223 cd01892 Miro2 Miro2 subfamily. 99.5 1E-14 2.3E-19 153.1 9.3 159 632-841 4-165 (169)
224 cd01881 Obg_like The Obg-like 99.5 1.8E-14 4E-19 150.7 11.1 151 637-840 1-175 (176)
225 PRK05291 trmE tRNA modificatio 99.5 1.7E-14 3.7E-19 173.9 12.2 146 632-841 215-369 (449)
226 KOG0098 GTPase Rab2, small G p 99.5 2.5E-14 5.4E-19 146.2 11.4 157 633-841 7-167 (216)
227 PRK12296 obgE GTPase CgtA; Rev 99.5 5.1E-14 1.1E-18 169.0 15.8 155 634-843 161-341 (500)
228 KOG0394 Ras-related GTPase [Ge 99.5 1.4E-14 3.1E-19 147.8 9.3 161 632-841 9-177 (210)
229 KOG1532 GTPase XAB1, interacts 99.5 1.1E-14 2.4E-19 156.5 8.4 136 696-844 117-266 (366)
230 cd04130 Wrch_1 Wrch-1 subfamil 99.5 3.2E-14 6.8E-19 149.7 11.1 165 634-838 2-170 (173)
231 cd01876 YihA_EngB The YihA (En 99.5 1.5E-13 3.2E-18 141.8 15.6 153 635-840 2-169 (170)
232 KOG0078 GTP-binding protein SE 99.5 8.8E-14 1.9E-18 146.3 13.9 161 631-843 11-175 (207)
233 PRK12297 obgE GTPase CgtA; Rev 99.5 8.1E-14 1.7E-18 165.4 15.4 152 634-842 160-327 (424)
234 PF10662 PduV-EutP: Ethanolami 99.5 5.6E-14 1.2E-18 141.8 10.9 136 634-838 3-142 (143)
235 cd04105 SR_beta Signal recogni 99.5 7.6E-14 1.6E-18 151.3 12.6 187 633-838 1-201 (203)
236 cd04148 RGK RGK subfamily. Th 99.5 9.8E-14 2.1E-18 152.4 12.9 155 634-842 2-163 (221)
237 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1.4E-13 3E-18 151.0 14.0 113 633-760 2-118 (222)
238 KOG0468 U5 snRNP-specific prot 99.5 6.9E-14 1.5E-18 164.0 11.3 119 629-760 127-262 (971)
239 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.4E-13 3E-18 165.2 14.1 149 632-842 203-360 (442)
240 PF00025 Arf: ADP-ribosylation 99.5 6.7E-14 1.5E-18 148.1 9.9 155 631-840 13-174 (175)
241 PTZ00132 GTP-binding nuclear p 99.5 5E-13 1.1E-17 145.9 14.0 158 630-841 7-167 (215)
242 cd00882 Ras_like_GTPase Ras-li 99.5 3E-13 6.5E-18 135.2 11.1 151 637-838 1-156 (157)
243 cd04129 Rho2 Rho2 subfamily. 99.5 4.2E-13 9.1E-18 143.3 12.8 165 634-840 3-171 (187)
244 PF00071 Ras: Ras family; Int 99.4 3.6E-13 7.8E-18 139.4 11.2 156 634-841 1-160 (162)
245 TIGR00437 feoB ferrous iron tr 99.4 2.7E-13 5.8E-18 168.2 11.3 146 639-841 1-154 (591)
246 KOG0080 GTPase Rab18, small G 99.4 2.8E-13 6E-18 135.0 8.9 160 630-841 9-173 (209)
247 KOG0095 GTPase Rab30, small G 99.4 1.8E-12 3.9E-17 127.4 13.5 157 633-841 8-168 (213)
248 COG0486 ThdF Predicted GTPase 99.4 8.6E-13 1.9E-17 153.7 12.9 150 633-842 218-376 (454)
249 COG0370 FeoB Fe2+ transport sy 99.4 9.9E-13 2.1E-17 158.9 13.0 153 633-842 4-164 (653)
250 cd04103 Centaurin_gamma Centau 99.4 1.1E-12 2.4E-17 136.4 11.5 148 634-839 2-156 (158)
251 KOG0093 GTPase Rab3, small G p 99.4 1.8E-12 3.8E-17 127.5 11.6 164 634-849 23-190 (193)
252 KOG0087 GTPase Rab11/YPT3, sma 99.4 1.7E-12 3.7E-17 136.0 11.8 161 633-845 15-179 (222)
253 KOG0086 GTPase Rab4, small G p 99.4 2.4E-12 5.3E-17 127.0 11.8 155 633-839 10-168 (214)
254 cd03692 mtIF2_IVc mtIF2_IVc: t 99.4 1.1E-12 2.5E-17 121.7 9.1 75 1102-1186 8-84 (84)
255 cd01896 DRG The developmentall 99.4 3.7E-12 8E-17 141.0 14.6 82 634-731 2-90 (233)
256 cd01873 RhoBTB RhoBTB subfamil 99.4 5.1E-12 1.1E-16 136.2 14.4 122 633-760 3-133 (195)
257 KOG0079 GTP-binding protein H- 99.4 2.2E-12 4.7E-17 126.9 9.7 156 634-841 10-168 (198)
258 cd04104 p47_IIGP_like p47 (47- 99.3 1.5E-11 3.3E-16 132.7 15.9 178 633-844 2-186 (197)
259 PRK09866 hypothetical protein; 99.3 2.1E-11 4.5E-16 146.7 16.8 114 695-840 230-351 (741)
260 PF01926 MMR_HSR1: 50S ribosom 99.3 5.1E-12 1.1E-16 124.2 9.2 106 634-756 1-116 (116)
261 COG1084 Predicted GTPase [Gene 99.3 1.6E-11 3.5E-16 136.9 13.5 160 631-845 167-339 (346)
262 COG5192 BMS1 GTP-binding prote 99.3 4.4E-11 9.6E-16 138.1 17.2 247 604-908 40-306 (1077)
263 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.8E-11 4E-16 134.8 13.7 110 629-760 36-146 (225)
264 KOG0075 GTP-binding ADP-ribosy 99.3 1.4E-11 3.1E-16 121.3 11.2 155 634-841 22-181 (186)
265 COG1100 GTPase SAR1 and relate 99.3 3.1E-11 6.8E-16 131.6 15.1 115 633-761 6-125 (219)
266 COG2262 HflX GTPases [General 99.3 2.1E-11 4.6E-16 139.8 12.1 153 632-843 192-357 (411)
267 KOG0088 GTPase Rab21, small G 99.3 8.6E-12 1.9E-16 123.9 7.0 158 631-840 12-173 (218)
268 KOG0073 GTP-binding ADP-ribosy 99.2 2.8E-11 6.1E-16 121.8 10.6 158 631-841 15-177 (185)
269 KOG1489 Predicted GTP-binding 99.2 2.6E-11 5.7E-16 133.8 10.7 149 634-839 198-364 (366)
270 cd04102 RabL3 RabL3 (Rab-like3 99.2 2.9E-11 6.4E-16 130.8 10.9 118 634-760 2-142 (202)
271 COG3596 Predicted GTPase [Gene 99.2 5.1E-11 1.1E-15 130.1 12.2 175 629-842 36-222 (296)
272 KOG0070 GTP-binding ADP-ribosy 99.2 5.3E-11 1.2E-15 123.1 10.4 156 633-842 18-178 (181)
273 KOG0081 GTPase Rab27, small G 99.2 6.6E-11 1.4E-15 117.8 10.3 170 635-847 12-186 (219)
274 COG0536 Obg Predicted GTPase [ 99.2 8.5E-11 1.8E-15 131.6 12.2 157 635-845 162-336 (369)
275 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 1.5E-10 3.2E-15 124.8 13.8 111 634-761 2-130 (196)
276 KOG0091 GTPase Rab39, small G 99.2 8E-11 1.7E-15 118.0 10.5 160 633-843 9-174 (213)
277 PLN00023 GTP-binding protein; 99.2 5.2E-11 1.1E-15 135.5 10.3 131 629-760 18-164 (334)
278 PRK13768 GTPase; Provisional 99.2 1E-10 2.2E-15 131.2 12.5 131 695-842 97-247 (253)
279 KOG0097 GTPase Rab14, small G 99.2 1.2E-10 2.6E-15 113.5 10.6 151 634-836 13-167 (215)
280 KOG0395 Ras-related GTPase [Ge 99.1 3.2E-10 7E-15 122.1 13.0 160 631-843 2-166 (196)
281 COG1163 DRG Predicted GTPase [ 99.1 2.2E-10 4.7E-15 127.3 11.5 82 634-731 65-153 (365)
282 KOG0076 GTP-binding ADP-ribosy 99.1 1.1E-10 2.3E-15 118.7 8.1 163 633-843 18-188 (197)
283 cd01850 CDC_Septin CDC/Septin. 99.1 4.6E-10 9.9E-15 127.4 14.1 113 633-760 5-156 (276)
284 PF08477 Miro: Miro-like prote 99.1 4.2E-11 9.1E-16 117.7 4.7 106 634-758 1-119 (119)
285 KOG1191 Mitochondrial GTPase [ 99.1 3.1E-10 6.7E-15 131.9 10.7 159 632-841 268-449 (531)
286 cd01899 Ygr210 Ygr210 subfamil 99.1 7.3E-10 1.6E-14 127.7 13.7 95 635-729 1-110 (318)
287 PTZ00099 rab6; Provisional 99.1 5.3E-10 1.2E-14 118.6 11.4 109 696-842 30-142 (176)
288 PF09439 SRPRB: Signal recogni 99.1 2E-10 4.3E-15 121.2 7.6 113 631-761 2-126 (181)
289 PF03029 ATP_bind_1: Conserved 99.0 2.5E-10 5.4E-15 126.6 7.5 132 696-841 92-236 (238)
290 KOG0083 GTPase Rab26/Rab37, sm 99.0 5.5E-10 1.2E-14 108.2 7.1 153 637-840 2-158 (192)
291 PRK09435 membrane ATPase/prote 99.0 1.3E-09 2.8E-14 125.8 11.0 113 694-842 148-260 (332)
292 KOG0393 Ras-related small GTPa 99.0 1.3E-09 2.9E-14 115.5 9.4 171 631-841 3-178 (198)
293 KOG0090 Signal recognition par 99.0 4.4E-09 9.5E-14 110.8 12.9 180 633-840 39-237 (238)
294 KOG0072 GTP-binding ADP-ribosy 99.0 2.4E-09 5.1E-14 105.6 10.1 158 631-842 17-179 (182)
295 KOG4252 GTP-binding protein [S 99.0 9.7E-10 2.1E-14 111.6 7.6 208 629-891 17-228 (246)
296 PRK09602 translation-associate 98.9 6.2E-09 1.4E-13 123.5 13.5 97 633-729 2-113 (396)
297 COG4917 EutP Ethanolamine util 98.9 3.8E-09 8.2E-14 102.2 8.9 137 634-839 3-143 (148)
298 KOG0071 GTP-binding ADP-ribosy 98.9 7E-09 1.5E-13 101.9 10.1 153 634-841 19-177 (180)
299 smart00053 DYNc Dynamin, GTPas 98.9 1E-08 2.3E-13 113.4 12.5 131 630-760 24-205 (240)
300 KOG1490 GTP-binding protein CR 98.9 4.7E-09 1E-13 121.8 10.0 157 633-840 169-339 (620)
301 TIGR00073 hypB hydrogenase acc 98.9 2.8E-09 6.2E-14 116.0 7.2 104 694-840 102-205 (207)
302 PF05049 IIGP: Interferon-indu 98.9 2E-08 4.4E-13 116.7 14.1 172 633-844 36-220 (376)
303 KOG0410 Predicted GTP binding 98.8 1.2E-08 2.7E-13 113.0 9.9 146 631-840 177-339 (410)
304 KOG0074 GTP-binding ADP-ribosy 98.8 9.5E-09 2.1E-13 101.0 7.4 155 630-839 15-176 (185)
305 TIGR00750 lao LAO/AO transport 98.8 1.6E-08 3.4E-13 116.5 9.8 112 694-841 126-237 (300)
306 KOG2486 Predicted GTPase [Gene 98.8 1.1E-08 2.4E-13 111.7 7.3 167 629-841 133-315 (320)
307 PTZ00258 GTP-binding protein; 98.8 6.2E-08 1.3E-12 114.0 13.6 100 630-729 19-126 (390)
308 cd03702 IF2_mtIF2_II This fami 98.7 3.7E-08 8E-13 93.3 9.3 90 856-961 2-92 (95)
309 cd01853 Toc34_like Toc34-like 98.7 1.1E-07 2.4E-12 106.3 14.5 116 630-761 29-163 (249)
310 PF00350 Dynamin_N: Dynamin fa 98.7 1.8E-08 3.8E-13 105.3 7.7 64 694-757 100-168 (168)
311 TIGR00101 ureG urease accessor 98.7 3.5E-08 7.7E-13 106.7 7.8 103 695-840 92-194 (199)
312 KOG0077 Vesicle coat complex C 98.7 4.3E-08 9.2E-13 99.3 7.4 111 632-761 20-135 (193)
313 PF04670 Gtr1_RagA: Gtr1/RagA 98.7 2.9E-07 6.2E-12 101.5 14.2 150 634-827 1-162 (232)
314 cd03701 IF2_IF5B_II IF2_IF5B_I 98.6 1.6E-07 3.4E-12 89.4 9.8 88 856-960 2-91 (95)
315 TIGR02836 spore_IV_A stage IV 98.6 9.9E-08 2.1E-12 110.3 9.7 121 633-759 18-192 (492)
316 TIGR00991 3a0901s02IAP34 GTP-b 98.6 5.8E-07 1.3E-11 102.2 14.1 115 630-760 36-166 (313)
317 PF03308 ArgK: ArgK protein; 98.6 7.5E-08 1.6E-12 105.8 6.3 107 694-841 121-229 (266)
318 COG0378 HypB Ni2+-binding GTPa 98.6 5.3E-08 1.2E-12 102.2 4.8 164 633-840 14-199 (202)
319 COG1703 ArgK Putative periplas 98.6 1.6E-07 3.6E-12 104.2 8.8 175 630-842 49-254 (323)
320 PRK10463 hydrogenase nickel in 98.5 1.7E-07 3.7E-12 105.8 7.8 101 696-839 186-286 (290)
321 KOG0066 eIF2-interacting prote 98.5 3.3E-07 7.1E-12 104.7 8.9 48 216-263 38-91 (807)
322 KOG1954 Endocytosis/signaling 98.5 2.9E-06 6.3E-11 95.6 15.3 132 630-761 56-225 (532)
323 PF04548 AIG1: AIG1 family; I 98.4 1.6E-06 3.4E-11 95.0 12.4 111 634-761 2-130 (212)
324 KOG1707 Predicted Ras related/ 98.4 3.5E-07 7.6E-12 108.7 7.4 117 630-762 7-130 (625)
325 KOG0052 Translation elongation 98.4 1.5E-07 3.2E-12 108.1 4.0 66 695-760 82-155 (391)
326 KOG0096 GTPase Ran/TC4/GSP1 (n 98.4 8E-07 1.7E-11 92.2 8.4 155 632-840 10-167 (216)
327 KOG3883 Ras family small GTPas 98.4 2.2E-06 4.7E-11 85.8 10.4 117 631-760 8-131 (198)
328 PF00735 Septin: Septin; Inte 98.4 2.2E-06 4.7E-11 97.6 12.0 115 633-760 5-155 (281)
329 cd01859 MJ1464 MJ1464. This f 98.4 1.9E-06 4.2E-11 89.2 10.2 95 708-842 2-96 (156)
330 COG0012 Predicted GTPase, prob 98.3 5.4E-06 1.2E-10 95.4 11.9 98 632-729 2-108 (372)
331 cd01900 YchF YchF subfamily. 98.2 1E-06 2.2E-11 99.7 5.7 96 635-730 1-104 (274)
332 PRK09601 GTP-binding protein Y 98.2 2.4E-06 5.2E-11 99.7 7.7 97 633-730 3-108 (364)
333 PRK14722 flhF flagellar biosyn 98.2 3.3E-06 7.1E-11 99.1 7.9 129 631-760 136-294 (374)
334 KOG1144 Translation initiation 98.2 2.7E-06 5.8E-11 102.6 7.1 58 501-558 203-260 (1064)
335 KOG4423 GTP-binding protein-li 98.2 4.3E-07 9.3E-12 93.7 0.0 158 634-840 27-192 (229)
336 COG5019 CDC3 Septin family pro 98.1 2.2E-05 4.7E-10 90.0 13.2 117 630-761 21-176 (373)
337 cd01858 NGP_1 NGP-1. Autoanti 98.1 1.1E-05 2.4E-10 83.9 9.8 91 712-841 2-94 (157)
338 PRK14974 cell division protein 98.1 4.9E-06 1.1E-10 96.7 7.2 64 695-760 223-292 (336)
339 TIGR00993 3a0901s04IAP86 chlor 98.1 4.1E-05 8.8E-10 93.8 14.4 112 633-761 119-250 (763)
340 cd01855 YqeH YqeH. YqeH is an 98.1 1.2E-05 2.7E-10 86.1 9.0 104 703-841 19-124 (190)
341 KOG1486 GTP-binding protein DR 98.1 2E-05 4.4E-10 85.0 10.3 80 634-731 64-152 (364)
342 TIGR00157 ribosome small subun 98.1 9.7E-06 2.1E-10 90.7 8.4 95 706-839 24-120 (245)
343 cd01856 YlqF YlqF. Proteins o 98.0 2E-05 4.3E-10 83.2 10.1 99 702-842 2-101 (171)
344 KOG1487 GTP-binding protein DR 98.0 6.8E-06 1.5E-10 89.0 5.8 80 634-731 61-149 (358)
345 KOG1673 Ras GTPases [General f 98.0 2.5E-05 5.4E-10 78.5 9.0 161 631-838 19-182 (205)
346 cd01849 YlqF_related_GTPase Yl 98.0 6.1E-05 1.3E-09 78.2 12.3 84 720-842 1-85 (155)
347 TIGR03596 GTPase_YlqF ribosome 98.0 3.3E-05 7.2E-10 88.0 10.8 99 703-843 5-104 (276)
348 PRK10416 signal recognition pa 97.9 1.8E-05 3.8E-10 91.8 8.1 65 694-760 196-272 (318)
349 TIGR00064 ftsY signal recognit 97.9 2.2E-05 4.9E-10 89.1 8.2 64 694-760 154-230 (272)
350 KOG2655 Septin family protein 97.9 0.00021 4.6E-09 82.7 16.0 117 632-761 21-172 (366)
351 TIGR01425 SRP54_euk signal rec 97.9 1.8E-05 3.9E-10 94.4 7.4 65 694-760 182-252 (429)
352 cd01858 NGP_1 NGP-1. Autoanti 97.9 1.4E-05 2.9E-10 83.2 5.3 55 632-705 102-157 (157)
353 PRK12289 GTPase RsgA; Reviewed 97.9 3.6E-05 7.9E-10 90.2 9.3 87 714-840 85-173 (352)
354 cd04178 Nucleostemin_like Nucl 97.9 1.4E-05 3.1E-10 84.5 5.3 56 631-705 116-172 (172)
355 PRK09563 rbgA GTPase YlqF; Rev 97.8 7.5E-05 1.6E-09 85.6 10.3 101 702-844 7-108 (287)
356 cd03112 CobW_like The function 97.8 3.8E-05 8.3E-10 80.2 7.1 63 694-759 86-158 (158)
357 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 6.7E-05 1.5E-09 76.6 8.6 50 711-760 4-55 (141)
358 cd03690 Tet_II Tet_II: This su 97.8 8.5E-05 1.9E-09 69.3 7.7 81 853-946 2-83 (85)
359 PRK12727 flagellar biosynthesi 97.7 8.4E-05 1.8E-09 90.0 9.1 64 694-760 428-497 (559)
360 PRK11889 flhF flagellar biosyn 97.7 8.6E-05 1.9E-09 86.9 8.7 64 695-760 321-390 (436)
361 PRK00771 signal recognition pa 97.7 5.8E-05 1.2E-09 90.8 7.2 61 695-760 176-245 (437)
362 PF00448 SRP54: SRP54-type pro 97.7 4.8E-05 1E-09 82.3 5.8 64 695-760 84-153 (196)
363 cd03693 EF1_alpha_II EF1_alpha 97.7 0.0002 4.2E-09 67.8 9.1 84 853-952 3-89 (91)
364 KOG3905 Dynein light intermedi 97.7 0.00076 1.6E-08 75.5 14.6 86 633-731 53-140 (473)
365 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 4.2E-05 9.2E-10 78.1 4.7 53 634-705 85-138 (141)
366 KOG1547 Septin CDC10 and relat 97.7 0.00033 7.2E-09 75.4 11.4 116 632-760 46-197 (336)
367 cd03696 selB_II selB_II: this 97.7 9.7E-05 2.1E-09 68.5 6.6 74 1102-1186 8-83 (83)
368 cd01849 YlqF_related_GTPase Yl 97.7 4.8E-05 1E-09 78.9 5.0 56 631-705 99-155 (155)
369 PF03193 DUF258: Protein of un 97.6 3E-05 6.5E-10 80.7 3.2 27 629-655 32-58 (161)
370 cd03691 BipA_TypA_II BipA_TypA 97.6 0.00021 4.6E-09 66.6 8.6 80 855-946 1-84 (86)
371 PRK12726 flagellar biosynthesi 97.6 0.00016 3.4E-09 84.5 9.3 24 631-654 205-228 (407)
372 PRK12288 GTPase RsgA; Reviewed 97.6 0.00053 1.1E-08 80.5 13.8 88 716-840 118-206 (347)
373 KOG0448 Mitofusin 1 GTPase, in 97.6 0.00029 6.3E-09 85.8 11.4 131 630-760 107-274 (749)
374 cd01855 YqeH YqeH. YqeH is an 97.6 5.6E-05 1.2E-09 81.1 4.7 54 633-705 128-190 (190)
375 cd01851 GBP Guanylate-binding 97.6 7.9E-05 1.7E-09 82.3 5.9 84 633-729 8-102 (224)
376 PRK00098 GTPase RsgA; Reviewed 97.6 0.00023 4.9E-09 82.1 9.3 84 716-838 78-163 (298)
377 PRK09563 rbgA GTPase YlqF; Rev 97.6 8.3E-05 1.8E-09 85.2 5.6 56 631-705 120-176 (287)
378 PF05783 DLIC: Dynein light in 97.5 0.00099 2.2E-08 80.8 14.7 24 632-655 25-48 (472)
379 cd00066 G-alpha G protein alph 97.5 0.00016 3.5E-09 84.0 7.8 66 695-760 161-241 (317)
380 COG0523 Putative GTPases (G3E 97.5 0.00044 9.5E-09 80.1 11.1 126 633-761 2-159 (323)
381 PRK12724 flagellar biosynthesi 97.5 0.00022 4.7E-09 84.6 8.3 24 631-654 222-245 (432)
382 TIGR03596 GTPase_YlqF ribosome 97.5 0.00013 2.8E-09 83.2 6.2 56 631-705 117-173 (276)
383 cd04092 mtEFG2_II_like mtEFG2_ 97.5 0.00033 7.2E-09 64.9 7.9 80 855-947 1-82 (83)
384 KOG3886 GTP-binding protein [S 97.5 0.00044 9.4E-09 74.4 8.9 114 633-761 5-130 (295)
385 TIGR00092 GTP-binding protein 97.5 0.00016 3.4E-09 84.7 6.3 97 633-730 3-109 (368)
386 cd01856 YlqF YlqF. Proteins o 97.4 0.00016 3.4E-09 76.4 5.5 56 631-705 114-170 (171)
387 cd03115 SRP The signal recogni 97.4 0.00034 7.3E-09 73.8 8.1 64 694-760 82-152 (173)
388 cd04088 EFG_mtEFG_II EFG_mtEFG 97.4 0.00047 1E-08 63.8 7.8 79 856-947 2-82 (83)
389 PRK12723 flagellar biosynthesi 97.4 0.00061 1.3E-08 80.9 10.7 66 693-760 253-325 (388)
390 PRK14721 flhF flagellar biosyn 97.4 0.0006 1.3E-08 81.5 10.5 125 631-760 190-339 (420)
391 cd03689 RF3_II RF3_II: this su 97.4 0.00055 1.2E-08 63.9 7.9 78 857-947 1-83 (85)
392 COG1161 Predicted GTPases [Gen 97.4 0.00017 3.6E-09 84.0 5.0 56 631-705 131-187 (322)
393 cd03114 ArgK-like The function 97.4 0.00032 7E-09 72.4 6.5 58 694-758 91-148 (148)
394 TIGR03597 GTPase_YqeH ribosome 97.4 9.8E-05 2.1E-09 87.3 2.9 108 634-760 156-279 (360)
395 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00058 1.3E-08 78.3 9.0 84 715-838 75-160 (287)
396 TIGR03597 GTPase_YqeH ribosome 97.3 0.00064 1.4E-08 80.4 9.4 102 705-840 50-151 (360)
397 PRK01889 GTPase RsgA; Reviewed 97.3 0.0007 1.5E-08 80.0 9.4 82 716-837 110-192 (356)
398 PRK10867 signal recognition pa 97.3 0.00067 1.4E-08 81.6 9.3 64 694-760 183-253 (433)
399 PRK06995 flhF flagellar biosyn 97.3 0.00076 1.6E-08 81.9 9.7 25 631-655 255-279 (484)
400 PRK06731 flhF flagellar biosyn 97.3 0.00065 1.4E-08 76.9 8.6 64 695-760 155-224 (270)
401 PRK12288 GTPase RsgA; Reviewed 97.3 0.00019 4.2E-09 84.1 4.3 23 634-656 207-229 (347)
402 cd03698 eRF3_II_like eRF3_II_l 97.3 0.0011 2.4E-08 61.5 8.4 69 854-939 1-72 (83)
403 PRK05703 flhF flagellar biosyn 97.3 0.00086 1.9E-08 80.9 9.8 65 694-760 299-370 (424)
404 cd03697 EFTU_II EFTU_II: Elong 97.3 0.001 2.3E-08 62.3 8.2 82 855-950 1-85 (87)
405 TIGR03348 VI_IcmF type VI secr 97.3 0.0013 2.9E-08 88.8 12.4 116 631-762 110-258 (1169)
406 cd03693 EF1_alpha_II EF1_alpha 97.3 0.00092 2E-08 63.2 7.8 76 1101-1187 11-88 (91)
407 TIGR00959 ffh signal recogniti 97.3 0.00046 1E-08 82.9 7.1 63 695-760 183-252 (428)
408 PRK12289 GTPase RsgA; Reviewed 97.2 0.00025 5.4E-09 83.3 4.4 23 634-656 174-196 (352)
409 cd03694 GTPBP_II Domain II of 97.2 0.0013 2.9E-08 61.6 8.5 80 855-948 1-85 (87)
410 KOG1424 Predicted GTP-binding 97.2 0.00015 3.2E-09 85.9 2.3 59 633-710 315-376 (562)
411 KOG1491 Predicted GTP-binding 97.2 0.00038 8.3E-09 78.8 5.4 100 631-730 19-126 (391)
412 cd04091 mtEFG1_II_like mtEFG1_ 97.2 0.0012 2.6E-08 61.0 7.8 77 855-946 1-79 (81)
413 PRK14723 flhF flagellar biosyn 97.2 0.0015 3.2E-08 82.9 10.7 25 632-656 185-209 (767)
414 KOG3887 Predicted small GTPase 97.2 0.0016 3.5E-08 70.3 9.3 114 633-761 28-149 (347)
415 cd03699 lepA_II lepA_II: This 97.1 0.0017 3.7E-08 60.7 8.2 78 855-946 1-84 (86)
416 TIGR02475 CobW cobalamin biosy 97.1 0.002 4.4E-08 75.6 10.7 24 631-654 3-26 (341)
417 COG1162 Predicted GTPases [Gen 97.1 0.00047 1E-08 78.1 4.7 27 629-655 161-187 (301)
418 COG3640 CooC CO dehydrogenase 97.1 0.00053 1.2E-08 74.4 4.7 62 695-759 134-197 (255)
419 KOG1534 Putative transcription 97.1 0.00095 2.1E-08 71.0 6.3 66 696-761 99-178 (273)
420 cd01859 MJ1464 MJ1464. This f 97.1 0.00073 1.6E-08 70.0 5.4 55 632-705 101-156 (156)
421 cd01342 Translation_Factor_II_ 96.9 0.0032 7E-08 56.5 7.9 70 1106-1185 13-82 (83)
422 cd04090 eEF2_II_snRNP Loc2 eEF 96.9 0.0031 6.8E-08 60.0 8.0 82 856-947 2-92 (94)
423 TIGR00157 ribosome small subun 96.9 0.00077 1.7E-08 75.5 4.1 25 631-655 119-143 (245)
424 cd04089 eRF3_II eRF3_II: domai 96.9 0.0047 1E-07 57.2 8.4 68 854-939 1-71 (82)
425 PF02492 cobW: CobW/HypB/UreG, 96.9 0.00033 7.1E-09 74.6 0.7 64 694-760 84-154 (178)
426 KOG0447 Dynamin-like GTP bindi 96.8 0.0091 2E-07 70.7 12.4 64 695-760 412-492 (980)
427 cd03696 selB_II selB_II: this 96.8 0.0053 1.1E-07 56.9 8.6 68 855-938 1-71 (83)
428 cd01854 YjeQ_engC YjeQ/EngC. 96.8 0.0012 2.5E-08 75.9 4.6 24 633-656 162-185 (287)
429 cd03694 GTPBP_II Domain II of 96.8 0.0037 8E-08 58.6 7.1 76 1102-1185 8-86 (87)
430 COG1419 FlhF Flagellar GTP-bin 96.8 0.004 8.8E-08 73.1 8.9 123 632-760 203-351 (407)
431 PRK13796 GTPase YqeH; Provisio 96.8 0.0011 2.4E-08 78.6 4.3 54 634-706 162-221 (365)
432 PF03144 GTP_EFTU_D2: Elongati 96.7 0.0034 7.3E-08 56.6 6.2 69 869-947 1-74 (74)
433 PRK00098 GTPase RsgA; Reviewed 96.7 0.0013 2.9E-08 75.8 4.4 25 632-656 164-188 (298)
434 cd03698 eRF3_II_like eRF3_II_l 96.7 0.0053 1.2E-07 57.0 7.4 74 1101-1185 8-82 (83)
435 COG3523 IcmF Type VI protein s 96.7 0.0096 2.1E-07 78.6 12.0 115 633-763 126-272 (1188)
436 cd04089 eRF3_II eRF3_II: domai 96.7 0.006 1.3E-07 56.5 7.5 73 1101-1185 8-81 (82)
437 cd03695 CysN_NodQ_II CysN_NodQ 96.7 0.0088 1.9E-07 55.3 8.5 61 855-931 1-62 (81)
438 KOG2485 Conserved ATP/GTP bind 96.6 0.0022 4.7E-08 72.3 5.2 57 633-705 144-206 (335)
439 PRK11537 putative GTP-binding 96.6 0.0027 5.8E-08 73.9 6.1 127 631-760 3-163 (318)
440 PRK13796 GTPase YqeH; Provisio 96.6 0.0077 1.7E-07 71.5 9.8 99 706-840 57-157 (365)
441 cd02038 FleN-like FleN is a me 96.5 0.0064 1.4E-07 62.0 7.4 63 695-759 45-109 (139)
442 KOG3859 Septins (P-loop GTPase 96.5 0.0066 1.4E-07 66.9 7.4 34 628-661 38-71 (406)
443 cd02036 MinD Bacterial cell di 96.4 0.0055 1.2E-07 64.5 6.6 63 696-760 64-127 (179)
444 KOG0066 eIF2-interacting prote 96.4 0.0019 4.2E-08 74.7 3.1 39 695-733 431-472 (807)
445 smart00010 small_GTPase Small 96.3 0.005 1.1E-07 60.3 5.2 23 634-656 2-24 (124)
446 KOG0082 G-protein alpha subuni 96.3 0.011 2.3E-07 68.9 8.4 69 692-760 192-275 (354)
447 PRK13695 putative NTPase; Prov 96.3 0.0093 2E-07 63.1 7.4 56 701-758 78-137 (174)
448 COG0552 FtsY Signal recognitio 96.3 0.0055 1.2E-07 70.2 5.6 26 629-654 136-161 (340)
449 cd04178 Nucleostemin_like Nucl 96.2 0.011 2.3E-07 62.8 7.1 41 720-760 1-43 (172)
450 cd03697 EFTU_II EFTU_II: Elong 96.2 0.0078 1.7E-07 56.4 5.3 77 1101-1186 7-85 (87)
451 cd02037 MRP-like MRP (Multiple 96.2 0.013 2.8E-07 61.7 7.6 67 694-760 67-134 (169)
452 PF09547 Spore_IV_A: Stage IV 96.2 0.02 4.4E-07 67.3 9.7 21 633-653 18-38 (492)
453 cd03700 eEF2_snRNP_like_II EF2 96.2 0.019 4.1E-07 54.5 7.8 79 857-945 3-90 (93)
454 cd01342 Translation_Factor_II_ 96.1 0.03 6.6E-07 50.0 8.9 49 855-903 1-49 (83)
455 KOG2743 Cobalamin synthesis pr 96.1 0.13 2.8E-06 57.9 15.1 29 626-654 51-79 (391)
456 smart00275 G_alpha G protein a 96.1 0.0095 2.1E-07 70.1 6.9 66 695-760 184-264 (342)
457 KOG1707 Predicted Ras related/ 96.1 0.016 3.6E-07 70.1 8.6 108 634-760 427-539 (625)
458 COG1162 Predicted GTPases [Gen 96.1 0.029 6.2E-07 64.0 10.1 85 718-840 79-165 (301)
459 COG1618 Predicted nucleotide k 96.0 0.096 2.1E-06 54.3 12.4 50 710-759 92-142 (179)
460 KOG2484 GTPase [General functi 96.0 0.0037 8E-08 72.4 2.3 57 630-705 250-307 (435)
461 PF03144 GTP_EFTU_D2: Elongati 95.9 0.02 4.3E-07 51.6 6.6 70 1108-1185 1-74 (74)
462 cd03110 Fer4_NifH_child This p 95.9 0.025 5.4E-07 59.9 8.4 65 694-760 92-156 (179)
463 cd03111 CpaE_like This protein 95.9 0.019 4.2E-07 55.8 6.7 59 696-756 44-106 (106)
464 COG0541 Ffh Signal recognition 95.9 0.011 2.3E-07 69.8 5.7 124 631-760 99-252 (451)
465 PF03205 MobB: Molybdopterin g 95.8 0.0071 1.5E-07 61.9 3.6 23 633-655 1-23 (140)
466 cd03695 CysN_NodQ_II CysN_NodQ 95.7 0.03 6.4E-07 51.8 6.9 63 1110-1185 17-80 (81)
467 KOG2423 Nucleolar GTPase [Gene 95.7 0.0065 1.4E-07 69.8 2.8 28 631-658 306-333 (572)
468 PLN00043 elongation factor 1-a 95.6 0.13 2.8E-06 62.8 13.6 75 1101-1186 240-316 (447)
469 KOG0780 Signal recognition par 95.6 0.024 5.2E-07 65.5 6.8 25 629-653 98-122 (483)
470 PRK12736 elongation factor Tu; 95.6 0.058 1.2E-06 64.9 10.4 76 1102-1186 218-295 (394)
471 KOG1533 Predicted GTPase [Gene 95.5 0.012 2.6E-07 63.9 3.9 67 695-761 97-177 (290)
472 PF13401 AAA_22: AAA domain; P 95.4 0.0098 2.1E-07 59.2 2.6 116 633-756 5-125 (131)
473 cd01983 Fer4_NifH The Fer4_Nif 95.4 0.03 6.6E-07 51.9 5.8 94 634-755 1-99 (99)
474 PTZ00141 elongation factor 1- 95.3 0.14 3.1E-06 62.4 13.0 76 1100-1186 239-316 (446)
475 cd02042 ParA ParA and ParB of 95.3 0.026 5.7E-07 54.1 5.4 71 635-730 2-73 (104)
476 PHA02518 ParA-like protein; Pr 95.3 0.063 1.4E-06 58.2 8.8 63 695-759 77-145 (211)
477 PRK13849 putative crown gall t 95.1 0.016 3.5E-07 64.4 3.7 63 694-758 83-151 (231)
478 PTZ00121 MAEBL; Provisional 95.0 0.027 5.8E-07 73.2 5.5 8 413-420 1629-1636(2084)
479 PRK10751 molybdopterin-guanine 95.0 0.058 1.3E-06 57.2 7.3 26 630-655 4-29 (173)
480 KOG0446 Vacuolar sorting prote 94.7 0.016 3.5E-07 73.3 2.5 131 629-760 26-212 (657)
481 PLN03126 Elongation factor Tu; 94.6 0.062 1.3E-06 66.0 7.1 78 1101-1187 296-375 (478)
482 PRK00049 elongation factor Tu; 94.5 0.086 1.9E-06 63.4 7.9 78 1101-1187 219-298 (396)
483 COG3276 SelB Selenocysteine-sp 94.5 0.11 2.4E-06 61.5 8.3 95 1062-1165 145-241 (447)
484 PRK01889 GTPase RsgA; Reviewed 94.4 0.027 5.7E-07 66.8 3.3 23 633-655 196-218 (356)
485 PF05621 TniB: Bacterial TniB 94.4 0.072 1.6E-06 60.9 6.5 121 627-756 56-189 (302)
486 PRK10512 selenocysteinyl-tRNA- 94.4 0.17 3.7E-06 64.1 10.5 77 1100-1187 180-259 (614)
487 PRK12735 elongation factor Tu; 94.3 0.11 2.3E-06 62.7 8.1 78 1101-1187 219-298 (396)
488 TIGR00483 EF-1_alpha translati 94.2 0.093 2E-06 63.7 7.4 82 1092-1186 227-310 (426)
489 PLN03127 Elongation factor Tu; 94.2 0.21 4.6E-06 61.0 10.5 78 1101-1187 268-349 (447)
490 KOG0781 Signal recognition par 94.2 0.2 4.2E-06 59.7 9.5 68 694-761 466-544 (587)
491 cd03688 eIF2_gamma_II eIF2_gam 94.2 0.26 5.7E-06 48.1 8.8 39 852-890 3-49 (113)
492 cd01120 RecA-like_NTPases RecA 94.1 0.082 1.8E-06 54.0 5.8 22 634-655 1-22 (165)
493 KOG4181 Uncharacterized conser 94.1 0.056 1.2E-06 61.6 4.6 24 633-656 189-212 (491)
494 TIGR00485 EF-Tu translation el 94.1 0.18 4E-06 60.6 9.4 77 1101-1186 217-295 (394)
495 TIGR03499 FlhF flagellar biosy 93.9 0.032 6.9E-07 64.0 2.4 25 631-655 193-217 (282)
496 PTZ00121 MAEBL; Provisional 93.8 0.039 8.4E-07 71.8 3.0 7 110-116 1008-1014(2084)
497 PRK12317 elongation factor 1-a 93.8 0.13 2.8E-06 62.5 7.5 75 1101-1186 232-308 (425)
498 PF13671 AAA_33: AAA domain; P 93.7 0.047 1E-06 55.3 3.0 20 634-653 1-20 (143)
499 cd03692 mtIF2_IVc mtIF2_IVc: t 93.7 0.35 7.7E-06 45.0 8.6 77 857-947 3-83 (84)
500 COG0488 Uup ATPase components 93.7 0.89 1.9E-05 56.6 14.6 25 631-655 347-371 (530)
No 1
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-155 Score=1342.75 Aligned_cols=595 Identities=81% Similarity=1.242 Sum_probs=583.3
Q ss_pred cccccCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccc--cccCCeEeecC
Q 000923 625 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT--LKVPGLLVIDT 702 (1222)
Q Consensus 625 ~~~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~--~~~~~i~~IDT 702 (1222)
....++|.|+||||||+|+|||-||+.|+++||+.+++|||||+||++|||..+++.++..+..+.. |..++|++|||
T Consensus 468 ~~~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdt 547 (1064)
T KOG1144|consen 468 ESTENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDT 547 (1064)
T ss_pred ccchhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecC
Confidence 3456899999999999999999999999999999999999999999999999999988888877654 88899999999
Q ss_pred CCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHH
Q 000923 703 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 782 (1222)
Q Consensus 703 PGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~ 782 (1222)
|||+.|+++|.||+++||++|||||++||+.|||+++|++|+.+++||||++||||++|+|..+++++|...|..|...+
T Consensus 548 pghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 548 PGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred CCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccccccceEEEE
Q 000923 783 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEV 862 (1222)
Q Consensus 783 ~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~~~~VlEv 862 (1222)
+++|..++..|+.+|.++|||..+||.+.+++.+|.+||+||++|+||++||.+|+.|.+..|...|.|.+.++|+|++|
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEV 707 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEV 707 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccccCcEEeecCcccccC
Q 000923 863 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIA 942 (1222)
Q Consensus 863 ~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa~g~~i~~~gL~~~~a 942 (1222)
+.++|+|+++++++.+|+||.||+||+||++||++++||+||+|+|++++||++.|+||++|.+|+|++|++.+|+++++
T Consensus 708 KvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaia 787 (1064)
T KOG1144|consen 708 KVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIA 787 (1064)
T ss_pred EeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCCCccHHHHHHHHHHHHHHHHhhhcccCCceEEEeCCcccHHHHHHHhccCCeeeeEEEeeeCccccchHHHH
Q 000923 943 GTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRA 1022 (1222)
Q Consensus 943 G~~l~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkadt~GSlEAl~~~L~~~~~~i~i~~~~vG~It~~DV~~A 1022 (1222)
|..|+|+.+++++++++..+|++|.+++++|+++++||+|+|+|+|||||||+||++ ++|||..+|||||+++|||.|
T Consensus 788 G~~l~VvgpeDd~e~lk~~~m~dl~~~l~~Id~sgeGv~vqastlgslealleflk~--~kIPv~gi~IGPVhKKDvmka 865 (1064)
T KOG1144|consen 788 GTRLLVVGPEDDIEELKEEAMEDLESVLSRIDKSGEGVYVQASTLGSLEALLEFLKT--VKIPVSGIGIGPVHKKDVMKA 865 (1064)
T ss_pred CCeeEEeCCcccHHHHHHHHHHHHHHHHHHhhccCCceEEEecccchHHHHHHHHhh--cCcccccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HhhhhccccCcEEEEecCCCCHHHHHHHHHhCCeEEEcccccchHHHHHHHHhhhhhHHHHhhccceeeceeEEeccccc
Q 000923 1023 SVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCV 1102 (1222)
Q Consensus 1023 ~~~~~~~~~~a~IlaFnVk~~~~a~~~A~~~gV~I~~~~IIY~Lid~~~~~l~~~~~~~~~e~~~~av~p~~~~i~~~~v 1102 (1222)
++|+++++.||+||||+|++..+|+.||..+||+||+++|||||||.|+.|++.+++..+++....|||||+|+|+|+||
T Consensus 866 ~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~~gVkIF~adiIYhLfD~f~~y~e~~ke~kkke~~~~AvFPc~L~ilpn~i 945 (1064)
T KOG1144|consen 866 SVMLEKKKEYATILAFDVKVEREARELADEMGVKIFCADIIYHLFDAFTKYIEEIKEEKKKESADEAVFPCVLQILPNCI 945 (1064)
T ss_pred HHHHhhccceeEEEEEeeEeeHHHHHHHHhhCceeeehhHHHHHHHHHHHHHHHHHHHHHhhccCceeeeeehhhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEEeeeeecCCCeeecCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccccccCC
Q 000923 1103 FNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIED 1182 (1222)
Q Consensus 1103 f~~~~~~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~~~d 1182 (1222)
||+++|+|+||.|..|+|++|+||||+..++|++|+|+||++|+++|.+|++|++|+|+|.+.|. .+++||||||...|
T Consensus 946 fN~RdPiv~GV~V~~GilkiGTPiCv~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~~~~-e~~~mfGRHf~~~D 1024 (1064)
T KOG1144|consen 946 FNKRDPIVLGVDVEEGILKIGTPICVPKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEASNG-EEQKMFGRHFDMED 1024 (1064)
T ss_pred ccCCCCeEEEEEeecCeeecCCceEEeccceeeeeeeeeecccCcccchhhcCCeEEEEEecCCC-CCcchhhcccCccc
Confidence 99999999999999999999999999988999999999999999999999999999999998764 56799999999999
Q ss_pred eEEEccchhhHHHHHHHhhccCCHHHHHHHHHHHhhcCCC
Q 000923 1183 ELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKIQ 1222 (1222)
Q Consensus 1183 ~l~s~i~r~~i~~lk~~~~~~~s~~~~~~~~~lk~~~~i~ 1222 (1222)
+|||+|||+|||+|+.+||++||.++|+||++||++|+|+
T Consensus 1025 ~LyS~isR~SId~lK~~fr~el~~~dw~Lv~~Lk~~f~I~ 1064 (1064)
T KOG1144|consen 1025 ILYSHISRRSIDILKKAFRDELTKDDWQLVVKLKKLFGII 1064 (1064)
T ss_pred hHHHHhhHhhHHHHHHHHHHHhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999996
No 2
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=4.8e-102 Score=944.58 Aligned_cols=575 Identities=40% Similarity=0.703 Sum_probs=519.9
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcc--cccccccCCeEeecCCCch
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELK--ANATLKVPGLLVIDTPGHE 706 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~--~~~~~~~~~i~~IDTPGhe 706 (1222)
.+|+|+|+|+||+|||||||+++|++..+..++.+|+|+++|++++++......+.... ....+..++|+|||||||+
T Consensus 1 ~~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 37999999999999999999999999999888899999999999988765432111110 1112334569999999999
Q ss_pred hhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 707 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 707 ~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
.|..++.++++.+|++|||||+++|+++||.+++.+++..++|+|||+||+|+...|....+.+|.+.+..+...++..|
T Consensus 81 ~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~ 160 (590)
T TIGR00491 81 AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNL 160 (590)
T ss_pred hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988988888899999988888898999
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhh--hccccccceEEEEEE
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL--TFRNELQCTVLEVKV 864 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l--~~~~~~~~~VlEv~~ 864 (1222)
...+..+..+|.++|+..+.|+....+++.+++||+||+||+||++|+.+|..+++.+|.+.+ .+..+++|+|++++.
T Consensus 161 ~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~ 240 (590)
T TIGR00491 161 DTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKE 240 (590)
T ss_pred HHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEE
Confidence 989999999999999999999888889999999999999999999999999988888776554 345789999999999
Q ss_pred EcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeee-eeeehhhhccccCcEEeecCcccccCC
Q 000923 865 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAG 943 (1222)
Q Consensus 865 ~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~-~~~~~~ev~aa~g~~i~~~gL~~~~aG 943 (1222)
++|+|++++++|++|+|++||+|+++++.++++++||+|++|+|+.++|... .+.++.++.+++|+++.+.||+.+.+|
T Consensus 241 ~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~~~aG 320 (590)
T TIGR00491 241 ETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDDVMAG 320 (590)
T ss_pred cCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999764 577889999999999999999999999
Q ss_pred CceEEeCCCccHHHHHHHHHHHHHHHHhhhcccCCceEEEeCCcccHHHHHHHhccCCeeeeEEEeeeCccccchHHHHH
Q 000923 944 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1023 (1222)
Q Consensus 944 ~~l~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkadt~GSlEAl~~~L~~~~~~i~i~~~~vG~It~~DV~~A~ 1023 (1222)
+.|+++ +++++..+++.++.++..+ .+.....||||||||+||||||+++|.. ..++|++++||+||++||++|+
T Consensus 321 ~~~~~~-~~e~~~~~~~~~~~~~~~~--~~~~~~~~vivkad~~Gs~EAl~~~l~~--~~i~i~~~~vG~it~~Dv~~A~ 395 (590)
T TIGR00491 321 SPIRVV-TDEEIEKVKEEILKEVEEI--KIDTDEEGVVVKADTLGSLEALVNELRD--MGVPIKKADIGDVSKRDVVEAG 395 (590)
T ss_pred CEEEEc-CcHHHHHHHHHHHHHhhhc--ccccccccEEEEecCcchHHHHHHHHHh--CCCcEEEecCCCCcHhHHHHHh
Confidence 999777 4455556666666555544 3566788999999999999999999987 5699999999999999999999
Q ss_pred hhhhccccCcEEEEecCCCCHHHHHHHHHhCCeEEEcccccchHHHHHHHHhhhhhHHHHhhccceeeceeEEecccccc
Q 000923 1024 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1103 (1222)
Q Consensus 1024 ~~~~~~~~~a~IlaFnVk~~~~a~~~A~~~gV~I~~~~IIY~Lid~~~~~l~~~~~~~~~e~~~~av~p~~~~i~~~~vf 1103 (1222)
++.++++.||+||||||+++++|+.+|+++||+|++|+|||||||+|++||.+++++.+++....+++||.++|+|++||
T Consensus 396 ~~~~~~~~~a~Il~Fnv~~~~~a~~~A~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~~~~~~a~v~il~~~vf 475 (590)
T TIGR00491 396 IAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRKWMEAIIKPAKIRLIPKLVF 475 (590)
T ss_pred hcccCCCCceEEEEecCCCCHHHHHHHHHcCCEEEEeCcHHHHHHHHHHHHHhhhcchhhhhcceeEEEEEEEEeeheee
Confidence 99888899999999999999999999999999999999999999999999999999988877888999999999999999
Q ss_pred cCCCCeEEEEEEEeeeeecCCCeeecCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccccccCCe
Q 000923 1104 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDE 1183 (1222)
Q Consensus 1104 ~~~~~~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~~~d~ 1183 (1222)
+.++|+||||+|++|+|++|++|+.+++.++ |+|.||+|++++|++|++|+||||+|+|| ||||||++||+
T Consensus 476 ~~~~~~i~G~~V~~G~i~~~~~v~r~~~~~i--G~i~slk~~k~~V~ev~~G~Ecgi~i~~~-------~~g~~~~~gD~ 546 (590)
T TIGR00491 476 RQSKPAIVGVEVLTGVIRQGYPLMKDDGETV--GTVRSMQDKGENVKSASAGQEVAIAIKDV-------VYGRTIHEGDT 546 (590)
T ss_pred eCCCCeEEEEEEecCEEecCCeEEecCCEEE--EEEchhcccCccccEECCCCEEEEEEeCc-------cccCCCCCCCE
Confidence 9999999999999999999999876667544 99999999999999999999999999986 89999999999
Q ss_pred EEEccchhhHHHHHHHhhccCCHHHHHHHHHHHh
Q 000923 1184 LVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKN 1217 (1222)
Q Consensus 1184 l~s~i~r~~i~~lk~~~~~~~s~~~~~~~~~lk~ 1217 (1222)
|||.|||+||++|+++|+++||.++|++|.++-.
T Consensus 547 l~~~i~~~~~~~l~~~~~~~l~~~~~~~~~ei~~ 580 (590)
T TIGR00491 547 LYVDVPENHYHILKEQLSDDLTDEEKDAMDKIAE 580 (590)
T ss_pred EEEeCCHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999976543
No 3
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=3.9e-99 Score=923.58 Aligned_cols=577 Identities=45% Similarity=0.730 Sum_probs=522.8
Q ss_pred ccCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhc-c-cccccccCCeEeecCCCc
Q 000923 628 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL-K-ANATLKVPGLLVIDTPGH 705 (1222)
Q Consensus 628 ~~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~IDTPGh 705 (1222)
..+|+|+|+||||+|||||||+++|++..+..++.+++|+++|++++++.......... . ....+..++++|||||||
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 35799999999999999999999999999999999999999999988765432111100 0 012233456999999999
Q ss_pred hhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 706 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 706 e~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
+.|..++.++++.+|++|||||+++|+++||++++.+++..++|+|||+||||++..|....+..|...+..+...+...
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~ 161 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQE 161 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987898878889999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhh--ccccccceEEEEE
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVK 863 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~--~~~~~~~~VlEv~ 863 (1222)
|...+..+..+|...||+.++|+....++..+++||+||++|+||.+|+..+..+++..|.+.+. ...+++|+|++++
T Consensus 162 f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~ 241 (586)
T PRK04004 162 LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVK 241 (586)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEE
Confidence 99999999999999999999998888889999999999999999999999998877776665553 4567999999999
Q ss_pred EEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCccee-eeeeeeehhhhccccCcEEeecCcccccC
Q 000923 864 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGIKITAQGLEHAIA 942 (1222)
Q Consensus 864 ~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~r-vk~~~~~~~ev~aa~g~~i~~~gL~~~~a 942 (1222)
.++|+|++++++|++|+|++||.|++++..+++.++||+|++|.|++++| +.+.+.+++++.+++++.+.+.||+.+.+
T Consensus 242 ~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~ 321 (586)
T PRK04004 242 EERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALA 321 (586)
T ss_pred EeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCC
Confidence 99999999999999999999999999998888999999999999999999 77788999999999999998999999999
Q ss_pred CCceEEeCCCccHHHHHHHHHHHHHHHHhhhcccCCceEEEeCCcccHHHHHHHhccCCeeeeEEEeeeCccccchHHHH
Q 000923 943 GTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRA 1022 (1222)
Q Consensus 943 G~~l~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkadt~GSlEAl~~~L~~~~~~i~i~~~~vG~It~~DV~~A 1022 (1222)
|+.|+++.+ +++..+....+.++..+ .+.....||||||||+||||||+++|.. .+|+|++++||+||++||++|
T Consensus 322 g~~~~v~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~vivkad~~Gs~EAi~~~l~~--~~i~i~~~~vG~it~~Dv~lA 396 (586)
T PRK04004 322 GSPLRVVRD-EDVEEVKEEVEEEIEEI--RIETDEEGVVVKADTLGSLEALVNELRE--EGIPIRKADVGDISKRDVIEA 396 (586)
T ss_pred CCeEEEeCc-HHHHHHHHHHHHHHHhc--cccccccCEEEEeCCccHHHHHHHHHHh--CCCCEEEeccCCCCHHHHHHH
Confidence 999999987 55666666665555554 2456788999999999999999999986 689999999999999999999
Q ss_pred HhhhhccccCcEEEEecCCCCHHHHHHHHHhCCeEEEcccccchHHHHHHHHhhhhhHHHHhhccceeeceeEEeccccc
Q 000923 1023 SVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCV 1102 (1222)
Q Consensus 1023 ~~~~~~~~~~a~IlaFnVk~~~~a~~~A~~~gV~I~~~~IIY~Lid~~~~~l~~~~~~~~~e~~~~av~p~~~~i~~~~v 1102 (1222)
++++++++.||+||||||+++++|+++|+++||+|++|+|||||||+|++||.+++++.+.+....+++||.++|+|+++
T Consensus 397 ~~~~~~~~~~a~Il~FnV~~~~~a~~~A~~~~V~I~~~~iIY~lid~~~~~~~~~~~~~~~~~~~~~~g~a~v~il~~~v 476 (586)
T PRK04004 397 STVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEKEKILEKIVRPAKIRILPGYV 476 (586)
T ss_pred HhhhccCCCceEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhcchhhhhhheeeceEEEEEcccee
Confidence 99999999999999999999999999999999999999999999999999999999998887778889999999999999
Q ss_pred ccCCCCeEEEEEEEeeeeecCCCeeecCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccccccCC
Q 000923 1103 FNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIED 1182 (1222)
Q Consensus 1103 f~~~~~~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~~~d 1182 (1222)
|+.++|+||||+|++|+|++|++||.++| +++|+|.||+|+|++|++|++|+||||+|++| +|||||++||
T Consensus 477 f~~~~~~IaGc~V~~G~i~~~~~v~r~~g--~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~-------~~g~~~~~gD 547 (586)
T PRK04004 477 FRQSDPAIVGVEVLGGTIKPGVPLIKEDG--KRVGTIKQIQDQGENVKEAKAGMEVAISIDGP-------TVGRQIKEGD 547 (586)
T ss_pred EecCCCeEEEEEEEeCEEecCCEEEEECC--EEEEEEehhhccCCcccEeCCCCEEEEEEecc-------cccCCCCCCC
Confidence 99989999999999999999999875577 45699999999999999999999999999987 6999999999
Q ss_pred eEEEccchhhHHHHHHHhhccCCHHHHHHHHHHHhh
Q 000923 1183 ELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNL 1218 (1222)
Q Consensus 1183 ~l~s~i~r~~i~~lk~~~~~~~s~~~~~~~~~lk~~ 1218 (1222)
+|||+++|+++++|+.+||++|+.++|++|.++-+|
T Consensus 548 ~i~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 583 (586)
T PRK04004 548 ILYVDIPEEHAKILEQELKDELSDDEKEALKEILEI 583 (586)
T ss_pred EEEEEEEehhHHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988765
No 4
>PRK14845 translation initiation factor IF-2; Provisional
Probab=100.00 E-value=3.3e-99 Score=953.34 Aligned_cols=564 Identities=40% Similarity=0.675 Sum_probs=521.7
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhccc--ccccccCCeEeecCCCchhhHHHH
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~--~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
.+|++| |||||++|++++++.+++||||||||+++++++.+...+..+.. ...+..++|+|||||||..|..++
T Consensus 468 ~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr 543 (1049)
T PRK14845 468 NGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLR 543 (1049)
T ss_pred eeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHH
Confidence 356666 99999999999999999999999999999999876655444321 234556789999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 792 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~ 792 (1222)
.+++..+|++|||||+++|+++||.+++.+++..++|+|||+||+|++++|..+.+.+|...+..|...++.++..++..
T Consensus 544 ~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 544 KRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred HhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999989999899999999999999999999999999
Q ss_pred HHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhh--ccccccceEEEEEEEcCcee
Q 000923 793 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKVIEGHGT 870 (1222)
Q Consensus 793 i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~--~~~~~~~~VlEv~~~~g~G~ 870 (1222)
+..+|.++|++.+.|+...+|++.+++|||||+||+||++|+.+|..+.+..|.+.+. ...+++|+|++++.++|.|+
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~ 703 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGT 703 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCcee
Confidence 9999999999999999989999999999999999999999999998887776655444 45678999999999999999
Q ss_pred EEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeee-eeeehhhhccccCcEEeecCcccccCCCceEEe
Q 000923 871 TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVV 949 (1222)
Q Consensus 871 v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~-~~~~~~ev~aa~g~~i~~~gL~~~~aG~~l~v~ 949 (1222)
|++++|++|+|++||+|++|++.++++++||+|++|.|++++|..+ .|.+++++.+++|+.|+++||+.+.+|+.|+++
T Consensus 704 vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v~ 783 (1049)
T PRK14845 704 TIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRIV 783 (1049)
T ss_pred EEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEEEe
Confidence 9999999999999999999999999999999999999999999665 788999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHhhhcccCCceEEEeCCcccHHHHHHHhccCCeeeeEEEeeeCccccchHHHHHhhhhcc
Q 000923 950 GPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKK 1029 (1222)
Q Consensus 950 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkadt~GSlEAl~~~L~~~~~~i~i~~~~vG~It~~DV~~A~~~~~~~ 1029 (1222)
.++++++.+.+..+.++..+ .+.+...||||||||+||||||+++|+. ..|+|++++||+||++||++|++|.+++
T Consensus 784 ~~e~~~~~~~~~~~~~~~~~--~~~~~~~~vivKaDt~GSlEAl~~~L~~--~~i~i~~~~vG~it~~DV~~A~~~~~~~ 859 (1049)
T PRK14845 784 PTKEKIEKAKEEVMKEVEEA--KIETDKEGILIKADTLGSLEALANELRK--AGIPIKKAEVGDITKKDVIEALSYKQEN 859 (1049)
T ss_pred CCHHHHHHHHHHHHHHHhhh--ccCcceeeEEEEecccchHHHHHHHHHh--CCCCEEEeeCCCCCHHHHHHHHhhhccC
Confidence 99999888887777777655 3566789999999999999999999986 5799999999999999999999999999
Q ss_pred ccCcEEEEecCCCCHHHHHHHHHhCCeEEEcccccchHHHHHHHHhhhhhHHHHhhccceeeceeEEecccccccCCCCe
Q 000923 1030 KEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPI 1109 (1222)
Q Consensus 1030 ~~~a~IlaFnVk~~~~a~~~A~~~gV~I~~~~IIY~Lid~~~~~l~~~~~~~~~e~~~~av~p~~~~i~~~~vf~~~~~~ 1109 (1222)
++||+||||||+++++|+++|+++||+||+|+|||||||+|++||.+++++.+.+....+++||.++|+|+|||+.++|+
T Consensus 860 ~~~a~Il~FnV~v~~~a~~~A~~~~V~I~~~~IIY~Lid~~~~~~~~~~~~~~~~~~~~~~~p~~v~ilp~~vF~~~~~~ 939 (1049)
T PRK14845 860 PLYGVILGFNVKVLPEAQEEAEKYGVKIFVDNIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPDCIFRRSNPA 939 (1049)
T ss_pred CCCcEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhchhhhhhhhcccCceEEEeccceEEeCCCCe
Confidence 99999999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred EEEEEEEeeeeecCCCeeecCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccccccCCeEEEccc
Q 000923 1110 VLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHIS 1189 (1222)
Q Consensus 1110 IaG~~V~~G~l~~g~~i~v~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~~~d~l~s~i~ 1189 (1222)
||||+|++|+|++|++||..++.+ .|+|.||+|++++|++|++|+||||+|+|+ +|||||++||+||++|+
T Consensus 940 IaG~~V~~G~i~~~~~l~r~~~~~--iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~-------~~gr~~~~gD~l~~~i~ 1010 (1049)
T PRK14845 940 IVGVEVLEGTLRVGVTLIKEDGMK--VGTVRSIKDRGENVKEAKAGKAVAIAIEGA-------ILGRHVDEGETLYVDVP 1010 (1049)
T ss_pred EEEEEEeeCEEecCcEEEecCCEE--EEEEchHhccCccccEeCCCCEEEEEEecc-------cccCCCCCCCEEEEecC
Confidence 999999999999999987656644 399999999999999999999999999986 89999999999999999
Q ss_pred hhhHHHHHHHhhccCCHHHHHHHHHH
Q 000923 1190 RKSIDVLKANYRDDLSMDEWRLLVKL 1215 (1222)
Q Consensus 1190 r~~i~~lk~~~~~~~s~~~~~~~~~l 1215 (1222)
|.+|+.|+.+|+++|+.++|++|..+
T Consensus 1011 ~~~~~~l~~~~~~~l~~~~~~~~~~~ 1036 (1049)
T PRK14845 1011 ESHVRELYHKYMDRLRDDEKEALKMY 1036 (1049)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 99999999999999999999999854
No 5
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-94 Score=838.00 Aligned_cols=500 Identities=37% Similarity=0.480 Sum_probs=435.0
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 708 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F 708 (1222)
..|+|+|+||||+||||||||++|+.+++..++++|||||||+|+++++.. ..+.|+|||||||+.|
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-------------~~~~itFiDTPGHeAF 68 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-------------KIPGITFIDTPGHEAF 68 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-------------CCceEEEEcCCcHHHH
Confidence 479999999999999999999999999999999999999999999998632 1256999999999999
Q ss_pred HHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 709 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 709 ~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
++||.||+..||++||||++++|++|||.|++++++.+++||||++||||++. +
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~-------~------------------- 122 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPE-------A------------------- 122 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCC-------C-------------------
Confidence 99999999999999999999999999999999999999999999999999983 1
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccccccceEEEEEEEcCc
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 868 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~ 868 (1222)
+...+..+|.++||+++.| ++.+.|||+||+||+||++||..|..+.+.. .....+..++.|+|+|++.++|+
T Consensus 123 np~~v~~el~~~gl~~E~~------gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~-elka~~~~~a~gtviE~~~dkG~ 195 (509)
T COG0532 123 NPDKVKQELQEYGLVPEEW------GGDVIFVPVSAKTGEGIDELLELILLLAEVL-ELKANPEGPARGTVIEVKLDKGL 195 (509)
T ss_pred CHHHHHHHHHHcCCCHhhc------CCceEEEEeeccCCCCHHHHHHHHHHHHHHH-hhhcCCCCcceEEEEEEEeccCC
Confidence 1345667888899998865 6779999999999999999999998766543 44556678899999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccccCcEEeecCcccccCCCceEE
Q 000923 869 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 948 (1222)
Q Consensus 869 G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa~g~~i~~~gL~~~~aG~~l~v 948 (1222)
|++++++|++|||+.||.|++++..|++.+.++.++.|-+...++....+....++++|.+..+++.++..+..+..+++
T Consensus 196 G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~ 275 (509)
T COG0532 196 GPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVVKDEKKARAIAELRV 275 (509)
T ss_pred CceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCCCCeEEeccccccccCceEEecCChHHHhhhhhHhh
Confidence 99999999999999999999999999999999999888877777777777778888888888888888888888887776
Q ss_pred eC--CCccHHHHHHHHHHHHHHHHhhhcccCCceEEEeCCcccHHHHHHHh---ccCCeeeeEEEeeeCccccchHHHHH
Q 000923 949 VG--PDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFL---KSDAVKIPVSGISIGPVHKKDVMRAS 1023 (1222)
Q Consensus 949 ~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkadt~GSlEAl~~~L---~~~~~~i~i~~~~vG~It~~DV~~A~ 1023 (1222)
.. ...........+...+..+..+.++...||||||||+||||||..+| ..++++++|++++||+||++||++|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~ 355 (509)
T COG0532 276 VLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAA 355 (509)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHHHHHHHhcCCCceEEEEEEeecCCCChhhHHHHH
Confidence 54 22222222333333333333233456689999999999999998876 46789999999999999999999999
Q ss_pred hhhhccccCcEEEEecCCCCHHHHHHHHHhCCeEEEcccccchHHHHHHHHhhhhhHHHHhhc-cceeeceeEEeccccc
Q 000923 1024 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAA-DEAVFPCVLKILPNCV 1102 (1222)
Q Consensus 1024 ~~~~~~~~~a~IlaFnVk~~~~a~~~A~~~gV~I~~~~IIY~Lid~~~~~l~~~~~~~~~e~~-~~av~p~~~~i~~~~v 1102 (1222)
+ ++|+||||||++++.|+++|+..||+||+|+|||||||+|+.||.+++.+.+++.+ |.+ +|+.+.++
T Consensus 356 a------s~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~lied~~~~~~g~l~p~~~e~~~g~~-~~r~v~~~---- 424 (509)
T COG0532 356 A------SDAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLIEDVEAAMKGMLEPEKKERVIGLA-EVRAVFKL---- 424 (509)
T ss_pred h------cCCEEEEEecCCCHHHHHHHHhcCCcEEEcchHHHHHHHHHHHHHhccchhhhhhcccce-EEEEEEEc----
Confidence 7 57999999999999999999999999999999999999999999999999887765 655 45543333
Q ss_pred ccCCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccccccC
Q 000923 1103 FNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIE 1181 (1222)
Q Consensus 1103 f~~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~~~ 1181 (1222)
++.|.||||+|++|+|++|+++|+ |++.+||.|+|.||+|++++|++|++|+||||+|+|| +||.+|
T Consensus 425 --~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~~----------~di~~g 492 (509)
T COG0532 425 --PKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIENY----------RDIKEG 492 (509)
T ss_pred --CCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecCc----------ccCCCC
Confidence 348999999999999999999998 6999999999999999999999999999999999997 589999
Q ss_pred CeEEEccchhhHHHHH
Q 000923 1182 DELVSHISRKSIDVLK 1197 (1222)
Q Consensus 1182 d~l~s~i~r~~i~~lk 1197 (1222)
|+|||++++++.+.|+
T Consensus 493 D~le~~~~~~~~r~l~ 508 (509)
T COG0532 493 DILEVFEPVEVKRTLK 508 (509)
T ss_pred CEEEEEEEEeechhhc
Confidence 9999999999888775
No 6
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.5e-86 Score=749.22 Aligned_cols=479 Identities=30% Similarity=0.466 Sum_probs=409.0
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 708 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F 708 (1222)
..|+|+|.||||+||||||||++|+++.+..+++||||||||+|.++.... ..|+|+|||||..|
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G---------------~~iTFLDTPGHaAF 214 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG---------------KSITFLDTPGHAAF 214 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC---------------CEEEEecCCcHHHH
Confidence 469999999999999999999999999999999999999999999876522 35999999999999
Q ss_pred HHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 709 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 709 ~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..||.||+..+|++||||.++||++|||.++|.+++..++|+||+|||||++. ++
T Consensus 215 ~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~-------a~------------------ 269 (683)
T KOG1145|consen 215 SAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPG-------AN------------------ 269 (683)
T ss_pred HHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCC-------CC------------------
Confidence 99999999999999999999999999999999999999999999999999873 33
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccccccceEEEEEEEcCc
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 868 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~ 868 (1222)
+..+..+|..+|+..+ ++|+++++||+||++|.|++.|.+.++.+ ...|..+..+..+++++|+|++.++|+
T Consensus 270 -pekv~~eL~~~gi~~E------~~GGdVQvipiSAl~g~nl~~L~eaill~-Ae~mdLkA~p~g~~eg~VIES~vdkg~ 341 (683)
T KOG1145|consen 270 -PEKVKRELLSQGIVVE------DLGGDVQVIPISALTGENLDLLEEAILLL-AEVMDLKADPKGPAEGWVIESSVDKGR 341 (683)
T ss_pred -HHHHHHHHHHcCccHH------HcCCceeEEEeecccCCChHHHHHHHHHH-HHHhhcccCCCCCceEEEEEeeecCCc
Confidence 4567778889998876 56999999999999999999999988743 355666778899999999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cCcEEeecCccc-ccCCCce
Q 000923 869 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QGIKITAQGLEH-AIAGTGL 946 (1222)
Q Consensus 869 G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g~~i~~~gL~~-~~aG~~l 946 (1222)
|.+++++|.+|||+.|+.++ || ..|++||+|++.+ .+.+..| ++..+.+.|+.. +++|+-+
T Consensus 342 G~~aT~iVkrGTLkKG~vlV-~G---~~w~KVr~l~D~n-------------Gk~i~~A~Ps~pv~V~GwkdlP~aGD~v 404 (683)
T KOG1145|consen 342 GPVATVIVKRGTLKKGSVLV-AG---KSWCKVRALFDHN-------------GKPIDEATPSQPVEVLGWKDLPIAGDEV 404 (683)
T ss_pred cceeEEEEeccccccccEEE-Ee---chhhhhhhhhhcC-------------CCCccccCCCCceEeecccCCCCCCceE
Confidence 99999999999999999655 64 4589999998655 2233333 566667779887 7999999
Q ss_pred EEeCCCccHHHHHHHHHHH---------H-------HH----H-------Hh-----hhcccC----CceEEEeCCcccH
Q 000923 947 YVVGPDDDLEDVKEEAMED---------M-------KS----V-------MS-----RIDKSG----EGVCVQASTLGSL 990 (1222)
Q Consensus 947 ~v~~~e~~~~~~~~~~~~~---------~-------~~----~-------~~-----~~~~~~----~~vivkadt~GSl 990 (1222)
+.+.+++.++.+....... + .. + .. +++... .+||||+|++||+
T Consensus 405 leVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~GS~ 484 (683)
T KOG1145|consen 405 LEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQGSA 484 (683)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccchH
Confidence 9999998776653221100 0 00 0 00 122221 4699999999999
Q ss_pred HHHHHHh---ccCCeeeeEEEeeeCccccchHHHHHhhhhccccCcEEEEecCCCCHHHHHHHHHhCCeEEEcccccchH
Q 000923 991 EALLEFL---KSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLF 1067 (1222)
Q Consensus 991 EAl~~~L---~~~~~~i~i~~~~vG~It~~DV~~A~~~~~~~~~~a~IlaFnVk~~~~a~~~A~~~gV~I~~~~IIY~Li 1067 (1222)
|||++.| .+++|+++|+++|||+||++||.+|.+ +.|||++|||+.++.+..+|...||+|+.||||||||
T Consensus 485 EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~------~daiI~~FnV~~~~~~~~~a~~~gVkI~~~nVIY~Li 558 (683)
T KOG1145|consen 485 EAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQA------SDAIIYGFNVKASPSVKQLAAAKGVKIRLYNVIYRLI 558 (683)
T ss_pred HHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHh------cCcEEEEEecCCChHHHHHHhccCceEeehhHHHHHH
Confidence 9998875 578999999999999999999999987 7999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHh-hccceeeceeEEecccccccCCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcc
Q 000923 1068 DQFTAYINNLKEEKKRE-AADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENN 1145 (1222)
Q Consensus 1068 d~~~~~l~~~~~~~~~e-~~~~av~p~~~~i~~~~vf~~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~ 1145 (1222)
|++++.|.+.+++..++ .+|+|.+...|.|.. +++.-.||||+|.+|.|.+.+.+++ |+|++||.|.|.||+|.
T Consensus 559 eDv~~~ls~rlp~v~e~~vvGea~Vl~~F~i~~----~rkr~~VAGC~V~~G~~~K~~~~rlvR~g~vV~~G~l~SlKh~ 634 (683)
T KOG1145|consen 559 EDVRELLSERLPPVEEQEVVGEAEVLATFDIRE----KRKRVPVAGCRVNNGVIKKSCKIRLVRNGKVVFEGELDSLKHL 634 (683)
T ss_pred HHHHHHHHhhCCCceEEeeccceeeeeeEeecc----ccccccccceEeecceEeecceEEEEeCCcEEEEechhHHhhh
Confidence 99999999988877554 569996544444332 1233359999999999999999997 89999999999999999
Q ss_pred cccccccccCceEEEEEccCCchhhhhhcccccccCCeEEEccchh
Q 000923 1146 HKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRK 1191 (1222)
Q Consensus 1146 k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~~~d~l~s~i~r~ 1191 (1222)
|++|.+|++|.||||.+.++| -.|.+||.|.|+.+|.
T Consensus 635 KedV~~vkkg~ECGl~~~d~~---------~~f~~GD~i~~ye~k~ 671 (683)
T KOG1145|consen 635 KEDVTEVKKGHECGLTFDDGN---------EDFKEGDKIQCYEKKR 671 (683)
T ss_pred hhhhhhhcCCCeeeeEeccCC---------cCCCcCCEEEEeehhh
Confidence 999999999999999999987 3699999999999665
No 7
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=1.7e-79 Score=748.72 Aligned_cols=475 Identities=32% Similarity=0.465 Sum_probs=395.2
Q ss_pred ccCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh
Q 000923 628 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 707 (1222)
Q Consensus 628 ~~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~ 707 (1222)
...|+|+|+||||+|||||||+++|++.++..++.+|||++++++.+.+... ..|+|||||||+.
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~---------------~~i~~iDTPGhe~ 147 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG---------------KMITFLDTPGHEA 147 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC---------------cEEEEEECCCCcc
Confidence 3569999999999999999999999999999888999999999988776421 1499999999999
Q ss_pred hHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 708 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 708 F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
|..++.+++..+|++|||||+++|+++||.++|++++..++|+|||+||||+.. +++
T Consensus 148 F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~-------~~~---------------- 204 (587)
T TIGR00487 148 FTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE-------ANP---------------- 204 (587)
T ss_pred hhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc-------CCH----------------
Confidence 999999999999999999999999999999999999999999999999999963 111
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccccccceEEEEEEEcC
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 867 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g 867 (1222)
..+...|...|+... .|+..+++||+||++|.||++|+++|..+ ...+.....+..+++++|++++.++|
T Consensus 205 ---e~v~~~L~~~g~~~~------~~~~~~~~v~iSAktGeGI~eLl~~I~~~-~~~~~l~~~~~~~~~~~V~ev~~~~g 274 (587)
T TIGR00487 205 ---DRVKQELSEYGLVPE------DWGGDTIFVPVSALTGDGIDELLDMILLQ-SEVEELKANPNGQASGVVIEAQLDKG 274 (587)
T ss_pred ---HHHHHHHHHhhhhHH------hcCCCceEEEEECCCCCChHHHHHhhhhh-hhhccccCCCCCCceeEEEEEEEeCC
Confidence 112233444444332 23566799999999999999999998743 11111123456789999999999999
Q ss_pred ceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhcc-ccCcEEeecCccc-ccCCCc
Q 000923 868 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA-AQGIKITAQGLEH-AIAGTG 945 (1222)
Q Consensus 868 ~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~a-a~g~~i~~~gL~~-~~aG~~ 945 (1222)
+|++++++|++|+|++||.|++++ .+++||+|++++. ..+.. .+|..+.+.||+. +.+|+.
T Consensus 275 ~G~v~~~~V~~GtL~~Gd~iv~~~----~~~kVr~l~~~~g-------------~~v~~a~~g~~v~i~Gl~~~p~aGd~ 337 (587)
T TIGR00487 275 RGPVATVLVQSGTLRVGDIVVVGA----AYGRVRAMIDENG-------------KSVKEAGPSKPVEILGLSDVPAAGDE 337 (587)
T ss_pred CcEEEEEEEEeCEEeCCCEEEECC----CccEEEEEECCCC-------------CCCCEECCCCEEEEeCCCCCCCCCCE
Confidence 999999999999999999998754 4678999987552 12232 2567777789988 499999
Q ss_pred eEEeCCCccHHHHHHHHHHH-------------HHHHHhhhc---ccCCceEEEeCCcccHHHHHHHh---ccCCeeeeE
Q 000923 946 LYVVGPDDDLEDVKEEAMED-------------MKSVMSRID---KSGEGVCVQASTLGSLEALLEFL---KSDAVKIPV 1006 (1222)
Q Consensus 946 l~v~~~e~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~vivkadt~GSlEAl~~~L---~~~~~~i~i 1006 (1222)
|+++.++.+++.+.+...+. +..+...+. ....+|||||||+||+|||.++| .+++++++|
T Consensus 338 ~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v 417 (587)
T TIGR00487 338 FIVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKV 417 (587)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEE
Confidence 99999998877665443221 122222222 24568999999999999998876 457899999
Q ss_pred EEeeeCccccchHHHHHhhhhccccCcEEEEecCCCCHHHHHHHHHhCCeEEEcccccchHHHHHHHHhhhhhHHHHh-h
Q 000923 1007 SGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-A 1085 (1222)
Q Consensus 1007 ~~~~vG~It~~DV~~A~~~~~~~~~~a~IlaFnVk~~~~a~~~A~~~gV~I~~~~IIY~Lid~~~~~l~~~~~~~~~e-~ 1085 (1222)
++++||+||++||++|++ ++|+||||||++++.++++|++.||+|++|+|||||+|+|++||.+++++...+ .
T Consensus 418 ~~~~vG~i~~~Dv~~a~~------~~a~i~~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~ 491 (587)
T TIGR00487 418 IHSGVGGITETDISLASA------SNAIIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEI 491 (587)
T ss_pred EEeecCCCchhhHHHHHh------cCCEEEEEecCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCcceeeEe
Confidence 999999999999999997 489999999999999999999999999999999999999999999999887654 4
Q ss_pred ccceeeceeEEecccccccC-CCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEc
Q 000923 1086 ADEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIA 1163 (1222)
Q Consensus 1086 ~~~av~p~~~~i~~~~vf~~-~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~ 1163 (1222)
+|.|. |+. ||+. +.|+||||+|++|+|++|+++|| |+|.+||.|+|.||+|+|++|++|++|+||||.|+
T Consensus 492 ~g~a~------v~~--vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~ 563 (587)
T TIGR00487 492 IGQAE------VRQ--VFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIK 563 (587)
T ss_pred eeeEE------EEE--EEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEe
Confidence 56664 333 7774 56999999999999999999998 78999999999999999999999999999999999
Q ss_pred cCCchhhhhhcccccccCCeEEEccchh
Q 000923 1164 GSNSEEQQKMFGRHFDIEDELVSHISRK 1191 (1222)
Q Consensus 1164 ~~n~~~~~~~~gr~f~~~d~l~s~i~r~ 1191 (1222)
||| +|++||+|+|+-..+
T Consensus 564 ~~~----------~~~~gD~i~~~~~~~ 581 (587)
T TIGR00487 564 NYN----------DIKEGDIIEAFEVQE 581 (587)
T ss_pred ccc----------cCCCCCEEEEEEEEE
Confidence 995 799999999986443
No 8
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=4.2e-79 Score=759.07 Aligned_cols=472 Identities=32% Similarity=0.464 Sum_probs=398.2
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 708 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F 708 (1222)
..|+|+|+||||+|||||||+++|+.+++..++.+|||++++++.+.|.. ..|+|||||||..|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~----------------~~ItfiDTPGhe~F 350 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG----------------GKITFLDTPGHEAF 350 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC----------------EEEEEEECCCCccc
Confidence 57999999999999999999999999999989999999999998887653 24999999999999
Q ss_pred HHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 709 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 709 ~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..++.+++..+|++|||||+++|+++||.++|.++...++|+|||+||||+.. | ++
T Consensus 351 ~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~-a------~~----------------- 406 (787)
T PRK05306 351 TAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG-A------NP----------------- 406 (787)
T ss_pred hhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc-c------CH-----------------
Confidence 99999999999999999999999999999999999999999999999999962 1 11
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccccccceEEEEEEEcCc
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 868 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~ 868 (1222)
..+...|...++..+ .|++.++|||+||++|.||.+|+++|.... ..+.....+..++.++|++++.++|+
T Consensus 407 --e~V~~eL~~~~~~~e------~~g~~vp~vpvSAktG~GI~eLle~I~~~~-e~~~l~~~~~~~~~g~V~es~~dkg~ 477 (787)
T PRK05306 407 --DRVKQELSEYGLVPE------EWGGDTIFVPVSAKTGEGIDELLEAILLQA-EVLELKANPDRPARGTVIEAKLDKGR 477 (787)
T ss_pred --HHHHHHHHHhcccHH------HhCCCceEEEEeCCCCCCchHHHHhhhhhh-hhhhcccCCCCCcEEEEEEEEEcCCC
Confidence 112223333333322 245678999999999999999999997643 22222334566789999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhc-cccCcEEeecCcccc-cCCCce
Q 000923 869 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHA-IAGTGL 946 (1222)
Q Consensus 869 G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~g~~i~~~gL~~~-~aG~~l 946 (1222)
|++++++|++|+|+.||.|+++ +.+++|+.|++.+ ...+. +.+|..+.+.||..+ .+|++|
T Consensus 478 G~v~~v~V~sGtLk~Gd~vv~g----~~~gkVr~m~~~~-------------~~~v~~A~pGd~V~I~gl~~~p~~Gd~l 540 (787)
T PRK05306 478 GPVATVLVQNGTLKVGDIVVAG----TTYGRVRAMVDDN-------------GKRVKEAGPSTPVEILGLSGVPQAGDEF 540 (787)
T ss_pred eEEEEEEEecCeEecCCEEEEC----CcEEEEEEEECCC-------------CCCCCEEcCCCeEEEeCCCCCCCCCCEE
Confidence 9999999999999999998863 5689999998654 12333 347888889999986 999999
Q ss_pred EEeCCCccHHHHHHHHHHH-------------HHHHHhhhccc---CCceEEEeCCcccHHHHHHHh---ccCCeeeeEE
Q 000923 947 YVVGPDDDLEDVKEEAMED-------------MKSVMSRIDKS---GEGVCVQASTLGSLEALLEFL---KSDAVKIPVS 1007 (1222)
Q Consensus 947 ~v~~~e~~~~~~~~~~~~~-------------~~~~~~~~~~~---~~~vivkadt~GSlEAl~~~L---~~~~~~i~i~ 1007 (1222)
+++.++.+++.+.+..... +..++..+... ..+|||||||+||+|||..+| .+++++++|+
T Consensus 541 ~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~ 620 (787)
T PRK05306 541 VVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNII 620 (787)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEE
Confidence 9999998877665432211 23333333222 368999999999999997764 5778999999
Q ss_pred EeeeCccccchHHHHHhhhhccccCcEEEEecCCCCHHHHHHHHHhCCeEEEcccccchHHHHHHHHhhhhhHHHHhh-c
Q 000923 1008 GISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA-A 1086 (1222)
Q Consensus 1008 ~~~vG~It~~DV~~A~~~~~~~~~~a~IlaFnVk~~~~a~~~A~~~gV~I~~~~IIY~Lid~~~~~l~~~~~~~~~e~-~ 1086 (1222)
+++||+||++||++|++ ++|+||||||++++.++.+|++.||+|++|+|||+|||+|+.||.+++.+...+. +
T Consensus 621 ~~~vG~it~~Dv~la~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~l~~~~~e~~~ 694 (787)
T PRK05306 621 HSGVGAITESDVTLAAA------SNAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEEEII 694 (787)
T ss_pred eeccCCCCHHHHHHHHh------cCCEEEEEcCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCchhheeee
Confidence 99999999999999987 6899999999999999999999999999999999999999999999998886654 5
Q ss_pred cceeeceeEEecccccccC-CCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEcc
Q 000923 1087 DEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG 1164 (1222)
Q Consensus 1087 ~~av~p~~~~i~~~~vf~~-~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~ 1164 (1222)
|.|.+ . .+|+. +.|.||||+|++|+|++|+++|| |+|.+||.|+|.||+|+|++|++|++|+||||.|.|
T Consensus 695 g~a~v------~--~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~ 766 (787)
T PRK05306 695 GQAEV------R--EVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLEN 766 (787)
T ss_pred eeEEE------E--EEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeec
Confidence 77743 3 26664 55999999999999999999998 799999999999999999999999999999999999
Q ss_pred CCchhhhhhcccccccCCeEEEccch
Q 000923 1165 SNSEEQQKMFGRHFDIEDELVSHISR 1190 (1222)
Q Consensus 1165 ~n~~~~~~~~gr~f~~~d~l~s~i~r 1190 (1222)
|| +|.+||+|+||...
T Consensus 767 ~~----------d~~~gD~ie~~~~~ 782 (787)
T PRK05306 767 YN----------DIKEGDIIEAYEMV 782 (787)
T ss_pred cc----------cCCCCCEEEEEEEE
Confidence 96 79999999998643
No 9
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=1.5e-77 Score=738.66 Aligned_cols=476 Identities=30% Similarity=0.431 Sum_probs=393.6
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 708 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F 708 (1222)
..|+|+|+||||+|||||||+++|+...+..++.+|||++++++.+.+.... ....|+|||||||..|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~------------~~~kItfiDTPGhe~F 308 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKD------------ENQKIVFLDTPGHEAF 308 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecC------------CceEEEEEECCcHHHH
Confidence 3588999999999999999999999998888889999999998877653210 1135999999999999
Q ss_pred HHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 709 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 709 ~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..++.+++..+|++|||||+++|+++||+++|.++...++|+|||+||||++. .++
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~-------~~~----------------- 364 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN-------ANT----------------- 364 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc-------cCH-----------------
Confidence 99999999999999999999999999999999999999999999999999962 111
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccccccceEEEEEEEcCc
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 868 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~ 868 (1222)
..+...|..+++.++ .+++.+|||++||++|.||.+|+++|..+.. .+.....+..++.++|++++.++++
T Consensus 365 --e~v~~eL~~~~ll~e------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e-~~~lk~~~~~~~~g~V~e~~iD~~~ 435 (742)
T CHL00189 365 --ERIKQQLAKYNLIPE------KWGGDTPMIPISASQGTNIDKLLETILLLAE-IEDLKADPTQLAQGIILEAHLDKTK 435 (742)
T ss_pred --HHHHHHHHHhccchH------hhCCCceEEEEECCCCCCHHHHHHhhhhhhh-hhcccCCCCCCceEEEEEEEEcCCC
Confidence 112222322232222 2356789999999999999999999987642 1122234456788999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhc-cccCcEEeecCcc-cccCCCce
Q 000923 869 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLE-HAIAGTGL 946 (1222)
Q Consensus 869 G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~g~~i~~~gL~-~~~aG~~l 946 (1222)
|++++++|++|+|+.||.|++++ .+++||+|++... ..+. +.+|..+.+.||. .+.+|++|
T Consensus 436 G~V~~~~V~sGtLr~GD~vv~g~----~~gkVr~m~~~~~-------------~~v~~a~pgdiV~I~gl~~~~~~Gd~l 498 (742)
T CHL00189 436 GPVATILVQNGTLHIGDIIVIGT----SYAKIRGMINSLG-------------NKINLATPSSVVEIWGLSSVPATGEHF 498 (742)
T ss_pred ceEEEEEEEcCEEecCCEEEECC----cceEEEEEEcCCC-------------cCccEEcCCCceEecCcccCCCCCCEE
Confidence 99999999999999999998643 5788999875541 2233 3478888899994 57799999
Q ss_pred EEeCCCccHHHHHHHHHHHH----------HHH---HhhhcccCCceEEEeCCcccHHHHHHHh---ccCCeeeeEEEee
Q 000923 947 YVVGPDDDLEDVKEEAMEDM----------KSV---MSRIDKSGEGVCVQASTLGSLEALLEFL---KSDAVKIPVSGIS 1010 (1222)
Q Consensus 947 ~v~~~e~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~vivkadt~GSlEAl~~~L---~~~~~~i~i~~~~ 1010 (1222)
+++.++.+++.+.+...... ..+ +........+|||||||+||||||+++| .+++|+++|++++
T Consensus 499 ~v~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~ 578 (742)
T CHL00189 499 QVFNSEKEAKLKIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQLNILYAS 578 (742)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEEEEEEEee
Confidence 99999888776644322111 111 1122345678999999999999998876 4578999999999
Q ss_pred eCccccchHHHHHhhhhccccCcEEEEecCCCCHHHHHHHHHhCCeEEEcccccchHHHHHHHHhhhhhHHHHh-hccce
Q 000923 1011 IGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-AADEA 1089 (1222)
Q Consensus 1011 vG~It~~DV~~A~~~~~~~~~~a~IlaFnVk~~~~a~~~A~~~gV~I~~~~IIY~Lid~~~~~l~~~~~~~~~e-~~~~a 1089 (1222)
||+||++||++|++ ++|+||||||++++.++.+|++.||+|++|+|||+|||+|+++|.+++++...+ .+|+|
T Consensus 579 vG~it~~Dv~lA~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~lid~~~~~~~~~l~~~~~~~~~g~a 652 (742)
T CHL00189 579 LGEVTETDVEFAST------TNAEILAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLEYIEALMEDLLDPEYKKVPIGEA 652 (742)
T ss_pred cCCCCHHHHHHHHh------cCCEEEEeeCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCceeeeeeceeE
Confidence 99999999999997 589999999999999999999999999999999999999999999999887655 35666
Q ss_pred eeceeEEecccccccCCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEccCCch
Q 000923 1090 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSE 1168 (1222)
Q Consensus 1090 v~p~~~~i~~~~vf~~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~ 1168 (1222)
. |. .||+.++|.||||+|++|+|++|+++|| |++.+||.|+|.||+|++++|++|++|+||||.|.+||
T Consensus 653 ~------v~--~vF~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~~-- 722 (742)
T CHL00189 653 E------VK--TVFPLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEFQ-- 722 (742)
T ss_pred E------ee--EEEecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCCC--
Confidence 4 33 3777667999999999999999999998 78999999999999999999999999999999999998
Q ss_pred hhhhhcccccccCCeEEEccch
Q 000923 1169 EQQKMFGRHFDIEDELVSHISR 1190 (1222)
Q Consensus 1169 ~~~~~~gr~f~~~d~l~s~i~r 1190 (1222)
.|.+||+|.|+.-.
T Consensus 723 --------d~~~gD~ie~y~~~ 736 (742)
T CHL00189 723 --------LWQSGDKIHAFELI 736 (742)
T ss_pred --------CCCcCCEEEEEEEE
Confidence 69999999998643
No 10
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.7e-31 Score=300.10 Aligned_cols=260 Identities=26% Similarity=0.403 Sum_probs=201.7
Q ss_pred CCEEEEEccCCCCchhhhhhhcCC-------------------------------cccccccCceeEeeeeeEeeccccc
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGT-------------------------------NVQEGEAGGITQQIGATYFPAENIR 680 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~-------------------------------~v~~~e~~GIT~~iga~~~~~~~~~ 680 (1222)
...++|+||+|||||||+++|+.. +..+.+.+|+|.+++...|..+.
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k-- 84 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK-- 84 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC--
Confidence 356999999999999999999731 12334467888888777776653
Q ss_pred cchhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCC-------CChhHHHHHHHHHhcCC-ceEE
Q 000923 681 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIV 752 (1222)
Q Consensus 681 ~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dG-------v~~qT~e~l~~lk~~~v-P~IV 752 (1222)
+.|+|||||||.+|...+..|++++|++|||||+..| +++||++|+-+++.+++ .+||
T Consensus 85 --------------~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIV 150 (428)
T COG5256 85 --------------YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIV 150 (428)
T ss_pred --------------ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEE
Confidence 3499999999999999999999999999999999998 89999999999999997 4899
Q ss_pred EEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhh
Q 000923 753 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 832 (1222)
Q Consensus 753 viNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~e 832 (1222)
++||||++. |++ ++|.+....+...+...|++. ..++||||||++|.||..
T Consensus 151 avNKMD~v~-wde------------------~rf~ei~~~v~~l~k~~G~~~----------~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 151 AVNKMDLVS-WDE------------------ERFEEIVSEVSKLLKMVGYNP----------KDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEcccccc-cCH------------------HHHHHHHHHHHHHHHHcCCCc----------cCCeEEecccccCCcccc
Confidence 999999985 764 344555555666566677763 357999999999999977
Q ss_pred HHHHHHHHHHHHHHHhhhc--------cccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeecc
Q 000923 833 LLLLLVQWTQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 904 (1222)
Q Consensus 833 Ll~~i~~~~~~~l~e~l~~--------~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll 904 (1222)
.-+..-||-.++|++.|+. +.||+++|.+++.+.|.|++..++|.+|+|++||.|++.+.+ .
T Consensus 202 ~s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~--~-------- 271 (428)
T COG5256 202 KSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAG--V-------- 271 (428)
T ss_pred cCcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCc--c--------
Confidence 6655555556667766653 467999999999999999999999999999999999987643 2
Q ss_pred CCCCCcceeeeeeeeehhhhccc-cC--cEEeecCcccccCCCceEEeCCC
Q 000923 905 TPHPMKELRVKGTYLHHKQIKAA-QG--IKITAQGLEHAIAGTGLYVVGPD 952 (1222)
Q Consensus 905 ~p~p~~~~rvk~~~~~~~ev~aa-~g--~~i~~~gL~~~~aG~~l~v~~~e 952 (1222)
...|+++++|+.++..+ +| +.+.++|+.......+.++.+++
T Consensus 272 ------~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 272 ------VGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred ------eEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCC
Confidence 23466778888887766 45 45566776553333333444433
No 11
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.97 E-value=8.3e-30 Score=305.02 Aligned_cols=259 Identities=24% Similarity=0.327 Sum_probs=187.4
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc-------------------------------ccccccCceeEeeeeeEeecccccc
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPAENIRE 681 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~-------------------------------v~~~e~~GIT~~iga~~~~~~~~~~ 681 (1222)
.+|+++||+|||||||+++|+... ......+|+|++++...+.+..
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~--- 84 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--- 84 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC---
Confidence 469999999999999999997410 1223457888887766665543
Q ss_pred chhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCC-------ChhHHHHHHHHHhcCCc-eEEE
Q 000923 682 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVA 753 (1222)
Q Consensus 682 ~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv-------~~qT~e~l~~lk~~~vP-~IVv 753 (1222)
..|+|||||||.+|...+.+++..+|++|||||+..|+ .+||.+||.++..+++| +|||
T Consensus 85 -------------~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~ 151 (446)
T PTZ00141 85 -------------YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVC 151 (446)
T ss_pred -------------eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEE
Confidence 45999999999999999999999999999999999997 48999999999999998 5789
Q ss_pred Eeeecccc-CcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhh
Q 000923 754 LNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 832 (1222)
Q Consensus 754 iNKiDl~~-~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~e 832 (1222)
+||||+.. .|. ...|...+..+...|...|++. ..+||||+||++|.||.+
T Consensus 152 vNKmD~~~~~~~------------------~~~~~~i~~~i~~~l~~~g~~~----------~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 152 INKMDDKTVNYS------------------QERYDEIKKEVSAYLKKVGYNP----------EKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEccccccchhh------------------HHHHHHHHHHHHHHHHhcCCCc----------ccceEEEeecccCCCccc
Confidence 99999642 232 2344445556666666666642 247999999999999975
Q ss_pred HHHHHHHHHHHHHHHhh--------hccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeecc
Q 000923 833 LLLLLVQWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 904 (1222)
Q Consensus 833 Ll~~i~~~~~~~l~e~l--------~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll 904 (1222)
.-..+.||..+.|.+.| ....|+++.|.+++.++|.|++++|+|.+|+|++||.|++++.+ ..
T Consensus 204 ~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~--~~------- 274 (446)
T PTZ00141 204 KSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG--VT------- 274 (446)
T ss_pred CCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCC--cE-------
Confidence 32222222222222222 23467999999999999999999999999999999999987643 22
Q ss_pred CCCCCcceeeeeeeeehhhhccc-cC--cEEeecCcccccCCCceEEeCC
Q 000923 905 TPHPMKELRVKGTYLHHKQIKAA-QG--IKITAQGLEHAIAGTGLYVVGP 951 (1222)
Q Consensus 905 ~p~p~~~~rvk~~~~~~~ev~aa-~g--~~i~~~gL~~~~aG~~l~v~~~ 951 (1222)
.+|+++++|+..+..| +| +.+.+.+++......+.+++.+
T Consensus 275 -------~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~ 317 (446)
T PTZ00141 275 -------TEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDS 317 (446)
T ss_pred -------EEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecC
Confidence 3455555666555544 34 5555666654434445555543
No 12
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.6e-30 Score=297.07 Aligned_cols=257 Identities=25% Similarity=0.314 Sum_probs=198.4
Q ss_pred ccCCCCEEEEEccCCCCchhhhhhhcC---------------CcccccccCceeEeeeeeEeeccccccchhhccccccc
Q 000923 628 ENLRSPICCIMGHVDTGKTKLLDCIRG---------------TNVQEGEAGGITQQIGATYFPAENIRERTRELKANATL 692 (1222)
Q Consensus 628 ~~~R~~~V~IvG~vdsGKTTLl~~L~~---------------~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~ 692 (1222)
+++|| ++||.|+|||||||.++|+. .+.+..+.+|||+..-.+.+.|...
T Consensus 58 ~~iRN--fsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~------------- 122 (650)
T KOG0462|consen 58 ENIRN--FSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDG------------- 122 (650)
T ss_pred hhccc--eEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcC-------------
Confidence 67888 99999999999999999972 1134456789998776666655431
Q ss_pred ccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHH
Q 000923 693 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 772 (1222)
Q Consensus 693 ~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~ 772 (1222)
..+.+++||||||.+|...+.|.+..||++||||||.+|+++||...+.++..+++.+|.|+||||++. ++.
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~-------adp- 194 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPS-------ADP- 194 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCC-------CCH-
Confidence 013499999999999999999999999999999999999999999999999999999999999999974 322
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhc
Q 000923 773 KAIKQQNTDVQNEFNMRLVQIVTQLKEQ-GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF 851 (1222)
Q Consensus 773 ~~l~~q~~~~~~~~~~~l~~i~~~L~e~-gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~ 851 (1222)
..+..++.+. ++. .-+++.+||++|.|+..||+.|++.+|+|.. ..
T Consensus 195 ------------------e~V~~q~~~lF~~~------------~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~---~~ 241 (650)
T KOG0462|consen 195 ------------------ERVENQLFELFDIP------------PAEVIYVSAKTGLNVEELLEAIIRRVPPPKG---IR 241 (650)
T ss_pred ------------------HHHHHHHHHHhcCC------------ccceEEEEeccCccHHHHHHHHHhhCCCCCC---CC
Confidence 2222222211 221 2389999999999999999999998887643 45
Q ss_pred cccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cCc
Q 000923 852 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QGI 930 (1222)
Q Consensus 852 ~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g~ 930 (1222)
..||++.|++++++.++|.++.++|.+|.|+.||.|..+.+........-.++.|.-. ...++.++ .|.
T Consensus 242 d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~----------~~~~l~agqvGy 311 (650)
T KOG0462|consen 242 DAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMT----------PVVELDAGQVGY 311 (650)
T ss_pred CcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCce----------eeeeecccccce
Confidence 7889999999999999999999999999999999999887765444444445444411 12234444 365
Q ss_pred EEeecC-cccccCCCceEEeC
Q 000923 931 KITAQG-LEHAIAGTGLYVVG 950 (1222)
Q Consensus 931 ~i~~~g-L~~~~aG~~l~v~~ 950 (1222)
+|+.-+ +..+..|+++....
T Consensus 312 Ii~~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 312 IICNMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred eEecccccccccccceeeecc
Confidence 555444 77788888876554
No 13
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.97 E-value=2.8e-29 Score=310.02 Aligned_cols=251 Identities=29% Similarity=0.437 Sum_probs=188.6
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc---ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~---v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~ 709 (1222)
.+|+++||+|||||||+++|++.+ +.....+|||++++..++.... ...++|||||||+.|.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~---------------g~~i~~IDtPGhe~fi 65 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD---------------GRVLGFIDVPGHEKFL 65 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC---------------CcEEEEEECCCHHHHH
Confidence 379999999999999999998643 4445568999999876654321 1238999999999999
Q ss_pred HHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCce-EEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~-IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..+.+++..+|++|||||+++|+++||++++.++...++|. |||+||||++.. . .+..
T Consensus 66 ~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~-------~--------------~~~~ 124 (614)
T PRK10512 66 SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE-------A--------------RIAE 124 (614)
T ss_pred HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH-------H--------------HHHH
Confidence 99999999999999999999999999999999999999884 799999999621 0 1111
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccccccceEEEEEEEcCc
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 868 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~ 868 (1222)
....+...+...++ ..+||||+||++|.||++|++.|..+.... .....+|++.|..+|.++|.
T Consensus 125 v~~ei~~~l~~~~~------------~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~----~~~~~~~rl~Id~vf~v~G~ 188 (614)
T PRK10512 125 VRRQVKAVLREYGF------------AEAKLFVTAATEGRGIDALREHLLQLPERE----HAAQHRFRLAIDRAFTVKGA 188 (614)
T ss_pred HHHHHHHHHHhcCC------------CCCcEEEEeCCCCCCCHHHHHHHHHhhccc----cCcCCCceEEEEEEeccCCC
Confidence 12233333433332 236899999999999999999998654332 12456899999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cCcE--EeecC-cccccCCC
Q 000923 869 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QGIK--ITAQG-LEHAIAGT 944 (1222)
Q Consensus 869 G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g~~--i~~~g-L~~~~aG~ 944 (1222)
|+|++|+|.+|+|++||.|.++|++. .++|+++++|+..+..+ +|.. +.+.| ++......
T Consensus 189 GtVvtGtv~sG~l~~Gd~v~i~p~~~----------------~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~r 252 (614)
T PRK10512 189 GLVVTGTALSGEVKVGDTLWLTGVNK----------------PMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINR 252 (614)
T ss_pred eEEEEEEEecceEecCCEEEEcCCCC----------------cEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCC
Confidence 99999999999999999999876431 23556666676666655 4544 44555 55433444
Q ss_pred ceEEeCC
Q 000923 945 GLYVVGP 951 (1222)
Q Consensus 945 ~l~v~~~ 951 (1222)
+.+++.+
T Consensus 253 Gdvl~~~ 259 (614)
T PRK10512 253 GDWLLAD 259 (614)
T ss_pred cCEEeCC
Confidence 4444444
No 14
>PRK12736 elongation factor Tu; Reviewed
Probab=99.97 E-value=3.8e-29 Score=296.19 Aligned_cols=257 Identities=24% Similarity=0.347 Sum_probs=185.2
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCc----------------ccccccCceeEeeeeeEeeccccccchhhcccccccccC
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 695 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~----------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1222)
..+|+|+||+|||||||+++|++.. ......+|+|++++...+.+. ..
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~----------------~~ 75 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE----------------KR 75 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC----------------Cc
Confidence 3459999999999999999997521 122336788888765554432 23
Q ss_pred CeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEeeeccccCcccCCCchHHHH
Q 000923 696 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 774 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNKiDl~~~w~~~~~a~i~~~ 774 (1222)
.|+|||||||.+|...+.+++..+|++|||||+.+|+++||.++|.++...++| +|||+||||++. ...+
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~------~~~~--- 146 (394)
T PRK12736 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD------DEEL--- 146 (394)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc------hHHH---
Confidence 589999999999999999999999999999999999999999999999999999 678999999862 0111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCC--------ChhhHHHHHHHHHHHHHH
Q 000923 775 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE--------GIPDLLLLLVQWTQKTMV 846 (1222)
Q Consensus 775 l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGe--------GI~eLl~~i~~~~~~~l~ 846 (1222)
+......+...|...++. +..+|+||+||++|. +++.|++.|..+++.+.
T Consensus 147 -----------~~~i~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~- 204 (394)
T PRK12736 147 -----------LELVEMEVRELLSEYDFP----------GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPE- 204 (394)
T ss_pred -----------HHHHHHHHHHHHHHhCCC----------cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCC-
Confidence 111112344445555543 235799999999993 56777777766554321
Q ss_pred HhhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhcc
Q 000923 847 EKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 926 (1222)
Q Consensus 847 e~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~a 926 (1222)
.....||++.|.++|.++|.|++++|+|.+|+|++||.|+++|.... ..++|+++++|+..+..
T Consensus 205 --~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~--------------~~~~V~sI~~~~~~~~~ 268 (394)
T PRK12736 205 --RDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKET--------------QKTVVTGVEMFRKLLDE 268 (394)
T ss_pred --CCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCC--------------eEEEEEEEEECCEEccE
Confidence 12356899999999999999999999999999999999988764211 22455666666666554
Q ss_pred c-cCcEE--eecCcccccCCCceEEeCC
Q 000923 927 A-QGIKI--TAQGLEHAIAGTGLYVVGP 951 (1222)
Q Consensus 927 a-~g~~i--~~~gL~~~~aG~~l~v~~~ 951 (1222)
+ +|..+ ++.|++......+.+++.+
T Consensus 269 a~aGd~v~l~l~~i~~~~i~~G~vl~~~ 296 (394)
T PRK12736 269 GQAGDNVGVLLRGVDRDEVERGQVLAKP 296 (394)
T ss_pred ECCCCEEEEEECCCcHHhCCcceEEecC
Confidence 4 45444 4566654333344444443
No 15
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.97 E-value=1.9e-29 Score=310.03 Aligned_cols=257 Identities=26% Similarity=0.298 Sum_probs=194.3
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCc--cc--------------ccccCceeEeeeeeEeeccccccchhhcccccccc
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTN--VQ--------------EGEAGGITQQIGATYFPAENIRERTRELKANATLK 693 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~--v~--------------~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~ 693 (1222)
+|| |+|+||+|||||||+++|+... +. ....+|||+....+.+.|..
T Consensus 1 iRN--IaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--------------- 63 (594)
T TIGR01394 1 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--------------- 63 (594)
T ss_pred CcE--EEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC---------------
Confidence 466 9999999999999999998521 11 12356788777777666653
Q ss_pred cCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHH
Q 000923 694 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 773 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~ 773 (1222)
..|+|||||||.+|...+.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+.. +.+..
T Consensus 64 -~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~-------a~~~~ 135 (594)
T TIGR01394 64 -TKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS-------ARPDE 135 (594)
T ss_pred -EEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC-------cCHHH
Confidence 3499999999999999999999999999999999999999999999999999999999999999863 22211
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCC----------ChhhHHHHHHHHHHH
Q 000923 774 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQK 843 (1222)
Q Consensus 774 ~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGe----------GI~eLl~~i~~~~~~ 843 (1222)
.+..+...|...+...+ .-.+|++++||++|. ||..||+.|+.+++.
T Consensus 136 ---------------v~~ei~~l~~~~g~~~e--------~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 136 ---------------VVDEVFDLFAELGADDE--------QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ---------------HHHHHHHHHHhhccccc--------cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 12223333333332211 124699999999996 799999999988876
Q ss_pred HHHHhhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCc-eeeeeeeccCCCCCcceeeeeeeeehh
Q 000923 844 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALLTPHPMKELRVKGTYLHHK 922 (1222)
Q Consensus 844 ~l~e~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~-~~~~Ir~ll~p~p~~~~rvk~~~~~~~ 922 (1222)
+.. ....||++.|+.++++++.|+++.++|++|+|+.||.|++++.++. ...+|..++..... .+.
T Consensus 193 P~~---~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~----------~~~ 259 (594)
T TIGR01394 193 PKG---DLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGL----------ERV 259 (594)
T ss_pred CCC---CCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCC----------Cce
Confidence 532 3467899999999999999999999999999999999998876432 22344444322211 122
Q ss_pred hhccc-cCcEEeecCcccccCCCceE
Q 000923 923 QIKAA-QGIKITAQGLEHAIAGTGLY 947 (1222)
Q Consensus 923 ev~aa-~g~~i~~~gL~~~~aG~~l~ 947 (1222)
++..+ +|.++++.|++...+|+++.
T Consensus 260 ~v~~a~aGDiv~i~gl~~i~~Gdtl~ 285 (594)
T TIGR01394 260 EIDEAGAGDIVAVAGLEDINIGETIA 285 (594)
T ss_pred ECCEECCCCEEEEeCCcccCCCCEEe
Confidence 33433 78888899998888888874
No 16
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.97 E-value=2.6e-29 Score=300.50 Aligned_cols=258 Identities=23% Similarity=0.310 Sum_probs=187.8
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc-------------------------------ccccccCceeEeeeeeEeecccccc
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPAENIRE 681 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~-------------------------------v~~~e~~GIT~~iga~~~~~~~~~~ 681 (1222)
.+|+++||+|||||||+++|+... ......+|||++++.+++.+..
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~--- 84 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK--- 84 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC---
Confidence 459999999999999999997311 0123356777777766665543
Q ss_pred chhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCC-------ChhHHHHHHHHHhcCCc-eEEE
Q 000923 682 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVA 753 (1222)
Q Consensus 682 ~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv-------~~qT~e~l~~lk~~~vP-~IVv 753 (1222)
..++|||||||.+|...+.++++.+|++|||||+.+|. .+||++||.++..+++| +|||
T Consensus 85 -------------~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~ 151 (447)
T PLN00043 85 -------------YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICC 151 (447)
T ss_pred -------------EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEE
Confidence 35999999999999999999999999999999999873 28999999999999996 6889
Q ss_pred Eeeecccc-CcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhh
Q 000923 754 LNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 832 (1222)
Q Consensus 754 iNKiDl~~-~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~e 832 (1222)
+||||++. .| .+.+|...+..+...|...|+.. ..++|||+||++|+||.+
T Consensus 152 vNKmD~~~~~~------------------~~~~~~~i~~ei~~~l~~~g~~~----------~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 152 CNKMDATTPKY------------------SKARYDEIVKEVSSYLKKVGYNP----------DKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEcccCCchhh------------------hHHHHHHHHHHHHHHHHHcCCCc----------ccceEEEEeccccccccc
Confidence 99999862 12 23445555666667777777653 246999999999999965
Q ss_pred HHHHHHHHHHHHHHHhhh--------ccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeecc
Q 000923 833 LLLLLVQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 904 (1222)
Q Consensus 833 Ll~~i~~~~~~~l~e~l~--------~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll 904 (1222)
....+.||-.+.|++.|. ...||++.|.+++.+.|.|+++.|+|.+|+|++||.|++++++ ..
T Consensus 204 ~~~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~--~~------- 274 (447)
T PLN00043 204 RSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG--LT------- 274 (447)
T ss_pred cccCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC--CE-------
Confidence 333222222223333221 2457999999999999999999999999999999999987643 12
Q ss_pred CCCCCcceeeeeeeeehhhhccc-cC--cEEeecCcccccCCCceEEeC
Q 000923 905 TPHPMKELRVKGTYLHHKQIKAA-QG--IKITAQGLEHAIAGTGLYVVG 950 (1222)
Q Consensus 905 ~p~p~~~~rvk~~~~~~~ev~aa-~g--~~i~~~gL~~~~aG~~l~v~~ 950 (1222)
.+|+++++++..+..| +| +.+.+.+++......+.+++.
T Consensus 275 -------~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~ 316 (447)
T PLN00043 275 -------TEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASN 316 (447)
T ss_pred -------EEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEcc
Confidence 3455556666555544 33 556666665444444555554
No 17
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.96 E-value=5.1e-29 Score=306.97 Aligned_cols=254 Identities=29% Similarity=0.410 Sum_probs=192.7
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc---ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~---v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~ 709 (1222)
.+|+++||+|||||||+++|++.. +.....+|||++++..++.+.. ..++|||||||+.|.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~----------------~~v~~iDtPGhe~f~ 64 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD----------------YRLGFIDVPGHEKFI 64 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC----------------EEEEEEECCCHHHHH
Confidence 369999999999999999998633 4445568999999887766543 238999999999999
Q ss_pred HHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
.++..++..+|++|||||+++|+++||.+++.++...++| +|||+||||++. ... +..
T Consensus 65 ~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~-------~~~--------------~~~ 123 (581)
T TIGR00475 65 SNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN-------EEE--------------IKR 123 (581)
T ss_pred HHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC-------HHH--------------HHH
Confidence 9999999999999999999999999999999999999999 999999999972 110 011
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccccccceEEEEEEEcCc
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 868 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~ 868 (1222)
....+...+...++. ..+++|++||++|.||.+|+..|..++..... .....+|+++|..+|.++|.
T Consensus 124 ~~~ei~~~l~~~~~~-----------~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~--~~~~~p~r~~Id~~f~v~G~ 190 (581)
T TIGR00475 124 TEMFMKQILNSYIFL-----------KNAKIFKTSAKTGQGIGELKKELKNLLESLDI--KRIQKPLRMAIDRAFKVKGA 190 (581)
T ss_pred HHHHHHHHHHHhCCC-----------CCCcEEEEeCCCCCCchhHHHHHHHHHHhCCC--cCcCCCcEEEEEEEEecCCc
Confidence 111222223322221 24699999999999999999988776543211 12357899999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cC--cEEeecCcccccCCCc
Q 000923 869 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QG--IKITAQGLEHAIAGTG 945 (1222)
Q Consensus 869 G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g--~~i~~~gL~~~~aG~~ 945 (1222)
|++++|+|.+|+|++||.|.++|.+ . .++|++++.|+..+..| +| +.+.+.|++......+
T Consensus 191 GtVv~G~v~~G~i~~Gd~l~i~P~~--~--------------~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG 254 (581)
T TIGR00475 191 GTVVTGTAFSGEVKVGDNLRLLPIN--H--------------EVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRG 254 (581)
T ss_pred EEEEEEEEecceEecCCEEEECCCC--c--------------eEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCc
Confidence 9999999999999999999987643 1 24566666777666655 34 5566677765444445
Q ss_pred eEEeCCC
Q 000923 946 LYVVGPD 952 (1222)
Q Consensus 946 l~v~~~e 952 (1222)
++++.+.
T Consensus 255 ~~~~~~~ 261 (581)
T TIGR00475 255 LLILTPE 261 (581)
T ss_pred eEEcCCC
Confidence 5555443
No 18
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.1e-29 Score=268.10 Aligned_cols=257 Identities=26% Similarity=0.388 Sum_probs=194.2
Q ss_pred CEEEEEccCCCCchhhhhhhcCC----------------cccccccCceeEeeeeeEeeccccccchhhcccccccccCC
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 696 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~----------------~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1222)
.+|+.|||+|||||||.-+|+.. +.....++|||+...-..+.... ..
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~----------------rh 76 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN----------------RH 76 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC----------------ce
Confidence 45999999999999999988621 13455678999887665555432 45
Q ss_pred eEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEeeeccccCcccCCCchHHHHH
Q 000923 697 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 697 i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
+.++|||||.+|..+++.|+.+.|++||||+|.+|.+|||++|+.++++.++| +|+++||+|++.+ .+..
T Consensus 77 yahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd------~ell--- 147 (394)
T COG0050 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDD------EELL--- 147 (394)
T ss_pred EEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCc------HHHH---
Confidence 99999999999999999999999999999999999999999999999999997 6679999999842 2221
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCC-CC-------hhhHHHHHHHHHHHHHHH
Q 000923 776 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG-EG-------IPDLLLLLVQWTQKTMVE 847 (1222)
Q Consensus 776 ~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tG-eG-------I~eLl~~i~~~~~~~l~e 847 (1222)
..--.++.++|..++|. |..+||+..||+.- +| |.+|++.+..|++.|-.
T Consensus 148 -----------elVemEvreLLs~y~f~----------gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per- 205 (394)
T COG0050 148 -----------ELVEMEVRELLSEYGFP----------GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER- 205 (394)
T ss_pred -----------HHHHHHHHHHHHHcCCC----------CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC-
Confidence 11123677788888875 46789999999763 33 35555555555544322
Q ss_pred hhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc
Q 000923 848 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 927 (1222)
Q Consensus 848 ~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa 927 (1222)
....||.+.|.++|.+.|+|++++++|.+|+|++|+.+.+.|... .....+.|.+++.+.+..+
T Consensus 206 --~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~--------------~~kttvtgvemfrk~ld~~ 269 (394)
T COG0050 206 --DIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKE--------------TQKTTVTGVEMFRKLLDEG 269 (394)
T ss_pred --cccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccc--------------cceeEEEhHHHHHHHHhcc
Confidence 346789999999999999999999999999999999998877431 1223355666666655543
Q ss_pred ---cCcEEeecCcccccCCCceEEeCCC
Q 000923 928 ---QGIKITAQGLEHAIAGTGLYVVGPD 952 (1222)
Q Consensus 928 ---~g~~i~~~gL~~~~aG~~l~v~~~e 952 (1222)
.++-+.++|...-..-.+++++.|.
T Consensus 270 ~AGdnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 270 QAGDNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred ccCCCcceEEEeccccceecceEeecCC
Confidence 4566777777766666666666654
No 19
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.9e-29 Score=273.73 Aligned_cols=259 Identities=27% Similarity=0.373 Sum_probs=196.5
Q ss_pred CCEEEEEccCCCCchhhhhhhcC----------------CcccccccCceeEeeeeeEeeccccccchhhcccccccccC
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRG----------------TNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 695 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~----------------~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1222)
..+|+-|||+|||||||.-+|+. .+-.+..++|||++.. ++.|+... .
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~a--HveYeTa~--------------R 117 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAA--HVEYETAK--------------R 117 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeee--eeeeeccc--------------c
Confidence 35699999999999999998862 1124556899987654 44444322 3
Q ss_pred CeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEeeeccccCcccCCCchHHHH
Q 000923 696 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 774 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNKiDl~~~w~~~~~a~i~~~ 774 (1222)
.+.-+|||||.+|..+++.|....|++||||.++||.+|||+|||.++++.+++ ++|++||.|++.+ ++..+.
T Consensus 118 hYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d------~e~leL 191 (449)
T KOG0460|consen 118 HYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDD------PEMLEL 191 (449)
T ss_pred ccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCC------HHHHHH
Confidence 488999999999999999999999999999999999999999999999999987 7789999999842 222111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCC-------CC---hhhHHHHHHHHHHHH
Q 000923 775 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG-------EG---IPDLLLLLVQWTQKT 844 (1222)
Q Consensus 775 l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tG-------eG---I~eLl~~i~~~~~~~ 844 (1222)
--.++.++|.++||+ |..+|||..||+.- .| |..||+.+-.|++.|
T Consensus 192 --------------VEmE~RElLse~gf~----------Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P 247 (449)
T KOG0460|consen 192 --------------VEMEIRELLSEFGFD----------GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP 247 (449)
T ss_pred --------------HHHHHHHHHHHcCCC----------CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence 113577888999987 56789999998753 22 445566655555443
Q ss_pred HHHhhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhh
Q 000923 845 MVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 924 (1222)
Q Consensus 845 l~e~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev 924 (1222)
-. ....||.+.|..+|.++|+|+|++|+|.+|+|+.|+.+-+.|.+..+- ..|.+++++++.+
T Consensus 248 ~R---~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lk--------------ttvtgiemF~K~l 310 (449)
T KOG0460|consen 248 ER---DLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLK--------------TTVTGIEMFRKSL 310 (449)
T ss_pred cc---ccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCccee--------------eEeehHHHHHHHH
Confidence 22 346789999999999999999999999999999999998887654322 2355677778877
Q ss_pred ccc-cC--cEEeecCcccccCCCceEEeCCCc
Q 000923 925 KAA-QG--IKITAQGLEHAIAGTGLYVVGPDD 953 (1222)
Q Consensus 925 ~aa-~g--~~i~~~gL~~~~aG~~l~v~~~e~ 953 (1222)
..| +| +-+.++|+.....-.+++++.|..
T Consensus 311 d~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 311 DEAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred HhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 766 34 344567777766677777776654
No 20
>PLN03127 Elongation factor Tu; Provisional
Probab=99.96 E-value=2e-28 Score=292.60 Aligned_cols=259 Identities=23% Similarity=0.334 Sum_probs=183.8
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCc----------------ccccccCceeEeeeeeEeeccccccchhhccccccccc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 694 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~----------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~ 694 (1222)
...+|+|+||+|||||||+++|++.. ......+|||++++...+.+..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~---------------- 123 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK---------------- 123 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC----------------
Confidence 34569999999999999999996221 1234458899888776665432
Q ss_pred CCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEeeeccccCcccCCCchHHH
Q 000923 695 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVK 773 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNKiDl~~~w~~~~~a~i~~ 773 (1222)
..|+|||||||.+|...+.+++..+|++|||||+.+|+++||.+++.++...++| +|||+||||++. ...+.
T Consensus 124 ~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~------~~~~~- 196 (447)
T PLN03127 124 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD------DEELL- 196 (447)
T ss_pred eEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC------HHHHH-
Confidence 3499999999999999999999999999999999999999999999999999999 578999999972 00010
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCC---CCCC-------hhhHHHHHHHHHHH
Q 000923 774 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI---SGEG-------IPDLLLLLVQWTQK 843 (1222)
Q Consensus 774 ~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~---tGeG-------I~eLl~~i~~~~~~ 843 (1222)
..+. ..+...|...++. +..+|++|+||+ +|.| ++.|++.|..+++.
T Consensus 197 ----------~~i~---~~i~~~l~~~~~~----------~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 197 ----------ELVE---MELRELLSFYKFP----------GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred ----------HHHH---HHHHHHHHHhCCC----------CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 0011 1222333333332 245799999987 4555 67777777766543
Q ss_pred HHHHhhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhh
Q 000923 844 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 923 (1222)
Q Consensus 844 ~l~e~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~e 923 (1222)
+. -....+|++.|.++|.++|.|++++|+|.+|+|++||.|+++|... .....++|+++++|+..
T Consensus 254 p~---r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~------------~g~~~~~VksI~~~~~~ 318 (447)
T PLN03127 254 PV---RVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRP------------GGPLKTTVTGVEMFKKI 318 (447)
T ss_pred CC---cccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCC------------CCcEEEEEEEEEEECcE
Confidence 31 1234679999999999999999999999999999999998876421 00123456666777666
Q ss_pred hccc-cC--cEEeecCcccccCCCceEEeC
Q 000923 924 IKAA-QG--IKITAQGLEHAIAGTGLYVVG 950 (1222)
Q Consensus 924 v~aa-~g--~~i~~~gL~~~~aG~~l~v~~ 950 (1222)
+..+ +| +.+.+.|++......+.+++.
T Consensus 319 v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~ 348 (447)
T PLN03127 319 LDQGQAGDNVGLLLRGLKREDVQRGQVICK 348 (447)
T ss_pred eCEEcCCCEEEEEeCCCCHHHCCCccEEec
Confidence 6554 34 444455654433333444443
No 21
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.9e-29 Score=305.81 Aligned_cols=294 Identities=23% Similarity=0.258 Sum_probs=219.0
Q ss_pred cccCCCCEEEEEccCCCCchhhhhhhcCCc--------c----------cccccCceeEeeeeeEeeccccccchhhccc
Q 000923 627 EENLRSPICCIMGHVDTGKTKLLDCIRGTN--------V----------QEGEAGGITQQIGATYFPAENIRERTRELKA 688 (1222)
Q Consensus 627 ~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~--------v----------~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~ 688 (1222)
...+|| |+|+||+|||||||+++|+... + .....+|||++..++++.|..
T Consensus 7 ~~~~RN--igI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~---------- 74 (697)
T COG0480 7 LERIRN--IGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG---------- 74 (697)
T ss_pred cccceE--EEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC----------
Confidence 445777 9999999999999999997321 1 123457888888888887764
Q ss_pred ccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccC------
Q 000923 689 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG------ 762 (1222)
Q Consensus 689 ~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~------ 762 (1222)
.+.|+|||||||.+|+..+.|.++.+|++|+|||+..|+++||...|+++..+++|.|+++||||+...
T Consensus 75 -----~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~ 149 (697)
T COG0480 75 -----DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVV 149 (697)
T ss_pred -----ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhH
Confidence 134999999999999999999999999999999999999999999999999999999999999997531
Q ss_pred -------------------------------------cc---cCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCC
Q 000923 763 -------------------------------------WK---TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGM 802 (1222)
Q Consensus 763 -------------------------------------w~---~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl 802 (1222)
|. .....+++..+......++..|.+.+.+....|++.++
T Consensus 150 ~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl 229 (697)
T COG0480 150 EQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYL 229 (697)
T ss_pred HHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHh
Confidence 11 00001122333334444555555555555556666655
Q ss_pred chhhhhc---------cccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHh-----------------hhcccccc
Q 000923 803 NTELYYK---------NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----------------LTFRNELQ 856 (1222)
Q Consensus 803 ~~e~~~~---------~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~-----------------l~~~~~~~ 856 (1222)
....... ....+..+|+++.||.++.|+..||+.++.+++.|+... .....|+.
T Consensus 230 ~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~ 309 (697)
T COG0480 230 EGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLS 309 (697)
T ss_pred cCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceE
Confidence 4322100 011246889999999999999999999999998874432 11246689
Q ss_pred ceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCC-CceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cCcEEee
Q 000923 857 CTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QGIKITA 934 (1222)
Q Consensus 857 ~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~-g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g~~i~~ 934 (1222)
+.|+.+..++..|.+.+++||+|+|+.|+.|++.+.+ ..++.+|..|+.+. ..++..+ +|.++++
T Consensus 310 a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~-------------~~~v~~~~AG~I~a~ 376 (697)
T COG0480 310 ALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNE-------------REEVDEVPAGDIVAL 376 (697)
T ss_pred EEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCc-------------eeecccccCccEEEE
Confidence 9999999999999999999999999999988876654 24566666554333 1223333 6889999
Q ss_pred cCcccccCCCceEEeC
Q 000923 935 QGLEHAIAGTGLYVVG 950 (1222)
Q Consensus 935 ~gL~~~~aG~~l~v~~ 950 (1222)
.||..+.+|+++....
T Consensus 377 ~Gl~~~~tGdTl~~~~ 392 (697)
T COG0480 377 VGLKDATTGDTLCDEN 392 (697)
T ss_pred EcccccccCCeeecCC
Confidence 9999999999988655
No 22
>PLN03126 Elongation factor Tu; Provisional
Probab=99.96 E-value=2.2e-28 Score=293.67 Aligned_cols=257 Identities=25% Similarity=0.328 Sum_probs=183.2
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCc----------------ccccccCceeEeeeeeEeeccccccchhhcccccccccC
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 695 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~----------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1222)
..+|+++||+|||||||+++|++.. ......+|||++++..++.+.. .
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~----------------~ 144 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN----------------R 144 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC----------------c
Confidence 3459999999999999999998421 1334568899888777766542 3
Q ss_pred CeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEeeeccccCcccCCCchHHHH
Q 000923 696 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 774 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNKiDl~~~w~~~~~a~i~~~ 774 (1222)
.++|||||||.+|...+.+++..+|++|||||+..|+.+||.+||.++..+++| +|||+||||++. ...+
T Consensus 145 ~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~------~~~~--- 215 (478)
T PLN03126 145 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD------DEEL--- 215 (478)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC------HHHH---
Confidence 499999999999999999999999999999999999999999999999999999 778999999972 0111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCCh------------------hhHHHH
Q 000923 775 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLL 836 (1222)
Q Consensus 775 l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI------------------~eLl~~ 836 (1222)
+......+...|...||. ...+|+||+||++|.++ +.|++.
T Consensus 216 -----------~~~i~~~i~~~l~~~g~~----------~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~ 274 (478)
T PLN03126 216 -----------LELVELEVRELLSSYEFP----------GDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDA 274 (478)
T ss_pred -----------HHHHHHHHHHHHHhcCCC----------cCcceEEEEEccccccccccccccccCCCchhhhHHHHHHH
Confidence 111122445556666653 23579999999998643 233333
Q ss_pred HHHHHHHHHHHhhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeee
Q 000923 837 LVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 916 (1222)
Q Consensus 837 i~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~ 916 (1222)
|..+.+.+ .-....||++.|.++|.++|+|+++.|+|.+|+|++||.|++++...... .+|++
T Consensus 275 l~~~~~~p---~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~--------------~~Vks 337 (478)
T PLN03126 275 VDSYIPIP---QRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRS--------------TTVTG 337 (478)
T ss_pred HHHhCCCC---CCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceE--------------EEEEE
Confidence 33321111 11235689999999999999999999999999999999999875432222 34555
Q ss_pred eeeehhhhccc-cC--cEEeecCcccccCCCceEEeCC
Q 000923 917 TYLHHKQIKAA-QG--IKITAQGLEHAIAGTGLYVVGP 951 (1222)
Q Consensus 917 ~~~~~~ev~aa-~g--~~i~~~gL~~~~aG~~l~v~~~ 951 (1222)
++.++..+..+ +| +.+.+.+++......+.+++.+
T Consensus 338 I~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~ 375 (478)
T PLN03126 338 VEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKP 375 (478)
T ss_pred EEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecC
Confidence 55555555544 33 4455566655433444444443
No 23
>PRK12735 elongation factor Tu; Reviewed
Probab=99.96 E-value=3e-28 Score=288.69 Aligned_cols=255 Identities=24% Similarity=0.341 Sum_probs=183.3
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc----------------ccccccCceeEeeeeeEeeccccccchhhcccccccccCC
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 696 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~----------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1222)
.+|+|+||+|||||||+++|++.. ......+|||.+++...+.+.. ..
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~----------------~~ 76 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN----------------RH 76 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC----------------cE
Confidence 459999999999999999998521 1223467888887665554322 35
Q ss_pred eEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceE-EEEeeeccccCcccCCCchHHHHH
Q 000923 697 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 697 i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~I-VviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
++|||||||.+|...+.+++..+|++|||||+..|+.+||.++|.++...++|.| ||+||||++. ....
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~------~~~~---- 146 (396)
T PRK12735 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEEL---- 146 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc------hHHH----
Confidence 8999999999999999999999999999999999999999999999999999966 5899999962 1111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCC----------ChhhHHHHHHHHHHHHH
Q 000923 776 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKTM 845 (1222)
Q Consensus 776 ~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGe----------GI~eLl~~i~~~~~~~l 845 (1222)
+.....++...|...++. +..++++|+||++|. |++.|++.|..+++.+.
T Consensus 147 ----------~~~~~~ei~~~l~~~~~~----------~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~ 206 (396)
T PRK12735 147 ----------LELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPE 206 (396)
T ss_pred ----------HHHHHHHHHHHHHHcCCC----------cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCC
Confidence 111112333444444432 235799999999995 66777777776554221
Q ss_pred HHhhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhc
Q 000923 846 VEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 925 (1222)
Q Consensus 846 ~e~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~ 925 (1222)
-....+|++.|.++|.++|.|++++|+|.+|+|++||.|++++.... ..++|+++++|+..+.
T Consensus 207 ---~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~--------------~~~~VksI~~~~~~v~ 269 (396)
T PRK12735 207 ---RAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKET--------------QKTTVTGVEMFRKLLD 269 (396)
T ss_pred ---ccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCC--------------eEEEEEEEEECCeEeC
Confidence 12356899999999999999999999999999999999988764211 2345666666666655
Q ss_pred cc-cCc--EEeecCcccccCCCceEEeC
Q 000923 926 AA-QGI--KITAQGLEHAIAGTGLYVVG 950 (1222)
Q Consensus 926 aa-~g~--~i~~~gL~~~~aG~~l~v~~ 950 (1222)
.| +|. .+++.|++......+.+++.
T Consensus 270 ~a~aGd~v~l~L~~i~~~~i~rG~vl~~ 297 (396)
T PRK12735 270 EGQAGDNVGVLLRGTKREDVERGQVLAK 297 (396)
T ss_pred EECCCCEEEEEeCCCcHHHCCcceEEEc
Confidence 44 443 34445654433333444443
No 24
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.96 E-value=2.1e-28 Score=291.84 Aligned_cols=266 Identities=18% Similarity=0.227 Sum_probs=183.8
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCc---ccccccCceeEeeeeeEeeccc---cccchh--hcccc----c-------
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAEN---IRERTR--ELKAN----A------- 690 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~---v~~~e~~GIT~~iga~~~~~~~---~~~~~~--~~~~~----~------- 690 (1222)
..+.+|+++||+|||||||+.+|++.+ +..+..+|||+++|..++.+.. ...... .++.. .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 344579999999999999999999754 3566789999999987653210 000000 00000 0
Q ss_pred -ccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCC-CChhHHHHHHHHHhcCCc-eEEEEeeeccccCcccCC
Q 000923 691 -TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCR 767 (1222)
Q Consensus 691 -~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dG-v~~qT~e~l~~lk~~~vP-~IVviNKiDl~~~w~~~~ 767 (1222)
......++|||||||++|...+.+++..+|++|||||+.+| +++||.+|+.++..++++ +|||+||||++.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~------ 185 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK------ 185 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC------
Confidence 00123699999999999999999999999999999999996 799999999999999885 789999999972
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHH
Q 000923 768 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 847 (1222)
Q Consensus 768 ~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e 847 (1222)
.+ .+...+..+...|... +...++|||+||++|.||+.|++.|...++.+-
T Consensus 186 -~~--------------~~~~~~~ei~~~l~~~------------~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~-- 236 (460)
T PTZ00327 186 -EA--------------QAQDQYEEIRNFVKGT------------IADNAPIIPISAQLKYNIDVVLEYICTQIPIPK-- 236 (460)
T ss_pred -HH--------------HHHHHHHHHHHHHHhh------------ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCC--
Confidence 00 1111222232223221 123579999999999999999999986554331
Q ss_pred hhhccccccceEEEEEEEcC--------ceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeee
Q 000923 848 KLTFRNELQCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYL 919 (1222)
Q Consensus 848 ~l~~~~~~~~~VlEv~~~~g--------~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~ 919 (1222)
.....++++.|..+|.+.+ +|++++|+|.+|+|++||.|.+.+.+.. ... ..-+.+.| ...+|+++++
T Consensus 237 -r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~-~~~-~g~~~~~~-~~~~VksI~~ 312 (460)
T PTZ00327 237 -RDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIIS-KDS-GGEFTCRP-IRTRIVSLFA 312 (460)
T ss_pred -CCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCccc-ccc-cCcccccc-ceEEEEEEEE
Confidence 2235678999999887764 7999999999999999999998765310 000 00000001 1246777777
Q ss_pred ehhhhccc-cCcEEee
Q 000923 920 HHKQIKAA-QGIKITA 934 (1222)
Q Consensus 920 ~~~ev~aa-~g~~i~~ 934 (1222)
++..+..| +|..+++
T Consensus 313 ~~~~v~~a~aG~~vai 328 (460)
T PTZ00327 313 ENNELQYAVPGGLIGV 328 (460)
T ss_pred CCeECCEEcCCCEEEE
Confidence 77777655 5554443
No 25
>CHL00071 tufA elongation factor Tu
Probab=99.96 E-value=3.5e-28 Score=289.31 Aligned_cols=254 Identities=26% Similarity=0.342 Sum_probs=179.6
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc----------------ccccccCceeEeeeeeEeeccccccchhhcccccccccCC
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 696 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~----------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1222)
.+|+|+||+|||||||+++|++.. ......+|+|.++...++.+.. ..
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~----------------~~ 76 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN----------------RH 76 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC----------------eE
Confidence 459999999999999999998531 1223457888887766654432 35
Q ss_pred eEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEeeeccccCcccCCCchHHHHH
Q 000923 697 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 697 i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
++|||||||..|...+.+++..+|++|||||+..|+++||.+++.++...++| +|||+||||++.. ...
T Consensus 77 ~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~------~~~---- 146 (409)
T CHL00071 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD------EEL---- 146 (409)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH------HHH----
Confidence 89999999999999999999999999999999999999999999999999999 7789999999720 011
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCCh------------------hhHHHHH
Q 000923 776 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLLL 837 (1222)
Q Consensus 776 ~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI------------------~eLl~~i 837 (1222)
+......+...|...++. +..+|++|+||++|.++ +.|++.|
T Consensus 147 ----------~~~~~~~l~~~l~~~~~~----------~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l 206 (409)
T CHL00071 147 ----------LELVELEVRELLSKYDFP----------GDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAV 206 (409)
T ss_pred ----------HHHHHHHHHHHHHHhCCC----------CCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHH
Confidence 111112344455555543 13479999999999753 3444444
Q ss_pred HHHHHHHHHHhhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeee
Q 000923 838 VQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 917 (1222)
Q Consensus 838 ~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~ 917 (1222)
..+++.+ ......||++.|.+++.++|.|++++|+|.+|+|++||.|+++|.... ..++|+++
T Consensus 207 ~~~~~~p---~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~--------------~~~~VksI 269 (409)
T CHL00071 207 DSYIPTP---ERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRET--------------KTTTVTGL 269 (409)
T ss_pred HhhCCCC---CCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCC--------------cEEEEEEE
Confidence 4333211 112346799999999999999999999999999999999987653211 12455666
Q ss_pred eeehhhhccc-cCcE--EeecCcccccCCCceEEe
Q 000923 918 YLHHKQIKAA-QGIK--ITAQGLEHAIAGTGLYVV 949 (1222)
Q Consensus 918 ~~~~~ev~aa-~g~~--i~~~gL~~~~aG~~l~v~ 949 (1222)
++++..+..+ +|.. +++.+++......+.+++
T Consensus 270 ~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~ 304 (409)
T CHL00071 270 EMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLA 304 (409)
T ss_pred EEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEe
Confidence 6666555544 4533 345555433233333333
No 26
>PRK00049 elongation factor Tu; Reviewed
Probab=99.96 E-value=4.7e-28 Score=286.86 Aligned_cols=255 Identities=23% Similarity=0.337 Sum_probs=183.1
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc----------------ccccccCceeEeeeeeEeeccccccchhhcccccccccCC
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 696 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~----------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1222)
.+|+|+||+|||||||+++|++.. ......+|+|++++...+.+. ...
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~~ 76 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------------KRH 76 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----------------CeE
Confidence 459999999999999999998621 122346888888765554432 235
Q ss_pred eEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceE-EEEeeeccccCcccCCCchHHHHH
Q 000923 697 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 697 i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~I-VviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
|+|||||||.+|...+.+++..+|++|||||+..|+++||.++|.++...++|+| |++||||++. ...
T Consensus 77 i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~------~~~----- 145 (396)
T PRK00049 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEE----- 145 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc------hHH-----
Confidence 8999999999999999999999999999999999999999999999999999976 6899999962 000
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCC----------ChhhHHHHHHHHHHHHH
Q 000923 776 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKTM 845 (1222)
Q Consensus 776 ~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGe----------GI~eLl~~i~~~~~~~l 845 (1222)
.+......+...|...++. ...+|++|+||++|. |++.|++.|..+++.+
T Consensus 146 ---------~~~~~~~~i~~~l~~~~~~----------~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p- 205 (396)
T PRK00049 146 ---------LLELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTP- 205 (396)
T ss_pred ---------HHHHHHHHHHHHHHhcCCC----------ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCC-
Confidence 0111112344445555542 235799999999986 4567777776544322
Q ss_pred HHhhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhc
Q 000923 846 VEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 925 (1222)
Q Consensus 846 ~e~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~ 925 (1222)
.-....||++.|.++|.++|.|++++|+|.+|+|++||.|++++.... ...+|+++++++..+.
T Consensus 206 --~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~--------------~~~~VksI~~~~~~~~ 269 (396)
T PRK00049 206 --ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDT--------------QKTTVTGVEMFRKLLD 269 (396)
T ss_pred --CCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCC--------------ceEEEEEEEECCcEeC
Confidence 112356899999999999999999999999999999999988764211 2345666666666666
Q ss_pred cc-cCcE--EeecCcccccCCCceEEeC
Q 000923 926 AA-QGIK--ITAQGLEHAIAGTGLYVVG 950 (1222)
Q Consensus 926 aa-~g~~--i~~~gL~~~~aG~~l~v~~ 950 (1222)
.| +|.. +.+.|++....-.+.+++.
T Consensus 270 ~a~~Gd~v~l~l~~i~~~~i~~G~vl~~ 297 (396)
T PRK00049 270 EGQAGDNVGALLRGIKREDVERGQVLAK 297 (396)
T ss_pred EEcCCCEEEEEeCCCCHHHCCcceEEec
Confidence 54 4433 4445554333333444443
No 27
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=3.9e-28 Score=287.84 Aligned_cols=249 Identities=24% Similarity=0.344 Sum_probs=172.9
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCc----------------ccccccCceeEeeeeeEeeccccccchhhccccccccc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 694 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~----------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~ 694 (1222)
+..+|+|+||+|||||||+++|++.. ......+|+|+++....+.+..
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~---------------- 74 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETEN---------------- 74 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCC----------------
Confidence 34569999999999999999997321 1223457888887655544321
Q ss_pred CCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceE-EEEeeeccccCcccCCCchHHH
Q 000923 695 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVK 773 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~I-VviNKiDl~~~w~~~~~a~i~~ 773 (1222)
..++|||||||++|...+.+++..+|++|||||+.+|+.+||.++|.++...++|.| ||+||||++.. ..
T Consensus 75 ~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~------~~--- 145 (394)
T TIGR00485 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD------EE--- 145 (394)
T ss_pred EEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH------HH---
Confidence 348999999999999999999999999999999999999999999999999999976 68999999720 00
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCC-ChhhHHHHHHHHHHHHH---H-Hh
Q 000923 774 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWTQKTM---V-EK 848 (1222)
Q Consensus 774 ~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGe-GI~eLl~~i~~~~~~~l---~-e~ 848 (1222)
.+......+...|...++. +..+|+|++||++|. |...|...+..++.... . ..
T Consensus 146 -----------~~~~~~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~ 204 (394)
T TIGR00485 146 -----------LLELVEMEVRELLSEYDFP----------GDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPE 204 (394)
T ss_pred -----------HHHHHHHHHHHHHHhcCCC----------ccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCC
Confidence 0111112344445444432 234799999999985 44444332222221110 0 01
Q ss_pred hhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-
Q 000923 849 LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA- 927 (1222)
Q Consensus 849 l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa- 927 (1222)
.....+|++.|.++|.++|.|++++|+|.+|+|++||.|++.+... ...++|++++++...+..+
T Consensus 205 ~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~--------------~~~~~VksI~~~~~~~~~a~ 270 (394)
T TIGR00485 205 RETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKD--------------TRKTTVTGVEMFRKELDEGR 270 (394)
T ss_pred CCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCC--------------CcEEEEEEEEECCeEEEEEC
Confidence 1234679999999999999999999999999999999998865321 1234556666666555544
Q ss_pred cCcEE--eecCccc
Q 000923 928 QGIKI--TAQGLEH 939 (1222)
Q Consensus 928 ~g~~i--~~~gL~~ 939 (1222)
+|..+ .+.|++.
T Consensus 271 aGd~v~l~l~~i~~ 284 (394)
T TIGR00485 271 AGDNVGLLLRGIKR 284 (394)
T ss_pred CCCEEEEEeCCccH
Confidence 45443 4455543
No 28
>PRK10218 GTP-binding protein; Provisional
Probab=99.96 E-value=2.1e-28 Score=300.27 Aligned_cols=258 Identities=22% Similarity=0.234 Sum_probs=192.9
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCC--ccc--------------ccccCceeEeeeeeEeeccccccchhhccccccc
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGT--NVQ--------------EGEAGGITQQIGATYFPAENIRERTRELKANATL 692 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~--~v~--------------~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~ 692 (1222)
++|+ |+|+||+|||||||+++|+.. .+. ....+|||+....+.+.|..
T Consensus 4 ~iRn--IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~-------------- 67 (607)
T PRK10218 4 KLRN--IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND-------------- 67 (607)
T ss_pred CceE--EEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC--------------
Confidence 4676 999999999999999999852 121 12346777777666666543
Q ss_pred ccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHH
Q 000923 693 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 772 (1222)
Q Consensus 693 ~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~ 772 (1222)
..|+|||||||.+|...+.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+.. +.+.
T Consensus 68 --~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~-------a~~~ 138 (607)
T PRK10218 68 --YRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPG-------ARPD 138 (607)
T ss_pred --EEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCC-------Cchh
Confidence 3499999999999999999999999999999999999999999999999999999999999999862 2222
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCC----------ChhhHHHHHHHHHH
Q 000923 773 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQ 842 (1222)
Q Consensus 773 ~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGe----------GI~eLl~~i~~~~~ 842 (1222)
.. +..+...|...++.. ....+||+++||++|. |+..||+.|+.+++
T Consensus 139 ~v---------------l~ei~~l~~~l~~~~--------~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 139 WV---------------VDQVFDLFVNLDATD--------EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred HH---------------HHHHHHHHhccCccc--------cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 22 222222232222210 1234799999999998 58889999988887
Q ss_pred HHHHHhhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCc-eeeeeeeccCCCCCcceeeeeeeeeh
Q 000923 843 KTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALLTPHPMKELRVKGTYLHH 921 (1222)
Q Consensus 843 ~~l~e~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~-~~~~Ir~ll~p~p~~~~rvk~~~~~~ 921 (1222)
.+. .....||++.|+.++++++.|+++.++|++|+|+.||.|++++..+. ...+|..++..... ..
T Consensus 196 ~P~---~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~----------~~ 262 (607)
T PRK10218 196 APD---VDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGL----------ER 262 (607)
T ss_pred CCC---CCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecC----------Cc
Confidence 663 23467899999999999999999999999999999999988765332 12233333211111 12
Q ss_pred hhhcc-ccCcEEeecCcccccCCCceE
Q 000923 922 KQIKA-AQGIKITAQGLEHAIAGTGLY 947 (1222)
Q Consensus 922 ~ev~a-a~g~~i~~~gL~~~~aG~~l~ 947 (1222)
.++.. .+|.++++.||+.+.+|+++.
T Consensus 263 ~~v~~a~AGdIvai~gl~~~~~GdTl~ 289 (607)
T PRK10218 263 IETDLAEAGDIVAITGLGELNISDTVC 289 (607)
T ss_pred eECCEEcCCCEEEEECccccccCcEEe
Confidence 23333 379999999999999999884
No 29
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-28 Score=275.23 Aligned_cols=259 Identities=25% Similarity=0.283 Sum_probs=201.6
Q ss_pred ccCCCCEEEEEccCCCCchhhhhhhcCCc--c--------------cccccCceeEeeeeeEeeccccccchhhcccccc
Q 000923 628 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--V--------------QEGEAGGITQQIGATYFPAENIRERTRELKANAT 691 (1222)
Q Consensus 628 ~~~R~~~V~IvG~vdsGKTTLl~~L~~~~--v--------------~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~ 691 (1222)
.++|| |+||.|+|||||||++.|+... | .....+|||+-.-.+.+.|+.
T Consensus 3 ~~iRN--IAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~------------- 67 (603)
T COG1217 3 EDIRN--IAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG------------- 67 (603)
T ss_pred cccce--eEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC-------------
Confidence 35787 9999999999999999998532 1 112356777665555555544
Q ss_pred cccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchH
Q 000923 692 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 771 (1222)
Q Consensus 692 ~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i 771 (1222)
..|+|+|||||.+|...+.|.++..|.+||||||.+|++|||+-.+.-+...+++.|||+||||++.. ..
T Consensus 68 ---~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~A-------rp 137 (603)
T COG1217 68 ---TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDA-------RP 137 (603)
T ss_pred ---eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCC-------CH
Confidence 45999999999999999999999999999999999999999999999999999999999999999742 11
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCC----------ChhhHHHHHHHHH
Q 000923 772 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWT 841 (1222)
Q Consensus 772 ~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGe----------GI~eLl~~i~~~~ 841 (1222)
...+..+.+.|...|-+.+ .-.+|++..||+.|. ++..|++.|+.+.
T Consensus 138 ---------------~~Vvd~vfDLf~~L~A~de--------QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 138 ---------------DEVVDEVFDLFVELGATDE--------QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred ---------------HHHHHHHHHHHHHhCCChh--------hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 2234556667766665433 235799999999873 5677888888887
Q ss_pred HHHHHHhhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCc-eeeeeeeccCCCCCcceeeeeeeee
Q 000923 842 QKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALLTPHPMKELRVKGTYLH 920 (1222)
Q Consensus 842 ~~~l~e~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~-~~~~Ir~ll~p~p~~~~rvk~~~~~ 920 (1222)
+.|. .+...||++.|.-.-|..++|....++|++|++++|+.+.+....|. ..++|..+|.-..+.
T Consensus 195 p~P~---~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~---------- 261 (603)
T COG1217 195 PAPK---GDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLE---------- 261 (603)
T ss_pred CCCC---CCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeecccee----------
Confidence 7664 35578899999988899999999999999999999999988776543 344555555433222
Q ss_pred hhhhccc-cCcEEeecCcccccCCCceE
Q 000923 921 HKQIKAA-QGIKITAQGLEHAIAGTGLY 947 (1222)
Q Consensus 921 ~~ev~aa-~g~~i~~~gL~~~~aG~~l~ 947 (1222)
..++..| +|.++++.||+....|+++.
T Consensus 262 R~ei~eA~AGDIVaiaG~~~~~igdTi~ 289 (603)
T COG1217 262 RIEIEEAEAGDIVAIAGLEDINIGDTIC 289 (603)
T ss_pred eeecccccccCEEEEcCccccccccccc
Confidence 2233444 79999999999988888764
No 30
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=2.5e-28 Score=276.51 Aligned_cols=336 Identities=25% Similarity=0.341 Sum_probs=235.4
Q ss_pred cccCCCCEEEEEccCCCCchhhhhhhcCC---------------cccccccCceeEeeeeeEeeccccccchhhcccccc
Q 000923 627 EENLRSPICCIMGHVDTGKTKLLDCIRGT---------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANAT 691 (1222)
Q Consensus 627 ~~~~R~~~V~IvG~vdsGKTTLl~~L~~~---------------~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~ 691 (1222)
..++|| ++|+.|.|||||||.++|+.. +....+.+|||+...+..+.|.....
T Consensus 6 ~~~IRN--FsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g---------- 73 (603)
T COG0481 6 QKNIRN--FSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDG---------- 73 (603)
T ss_pred hhhccc--eEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCC----------
Confidence 456888 999999999999999999731 12345679999988877776653211
Q ss_pred cccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchH
Q 000923 692 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 771 (1222)
Q Consensus 692 ~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i 771 (1222)
..+.++|||||||.+|+..++|.+..|.++||||||+.|++.||.....++...++-+|.|+|||||+. ++.
T Consensus 74 -~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~-------Adp 145 (603)
T COG0481 74 -ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPA-------ADP 145 (603)
T ss_pred -CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCC-------CCH
Confidence 124599999999999999999999999999999999999999999999999999999999999999973 332
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH-cCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 000923 772 VKAIKQQNTDVQNEFNMRLVQIVTQLKE-QGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 850 (1222)
Q Consensus 772 ~~~l~~q~~~~~~~~~~~l~~i~~~L~e-~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~ 850 (1222)
. ++..++.+ .|+.. ...+.+||+||.||+++|+.|+..+|+|- -.
T Consensus 146 e-------------------rvk~eIe~~iGid~------------~dav~~SAKtG~gI~~iLe~Iv~~iP~P~---g~ 191 (603)
T COG0481 146 E-------------------RVKQEIEDIIGIDA------------SDAVLVSAKTGIGIEDVLEAIVEKIPPPK---GD 191 (603)
T ss_pred H-------------------HHHHHHHHHhCCCc------------chheeEecccCCCHHHHHHHHHhhCCCCC---CC
Confidence 1 11111111 24432 36788999999999999999999888764 35
Q ss_pred ccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCce-eeeeeeccCCCCCcceeeeeeeeehhhhccc-c
Q 000923 851 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLHHKQIKAA-Q 928 (1222)
Q Consensus 851 ~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~-~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~ 928 (1222)
.+.|+++.|++++++..+|.++.++|..|+|++||.|.+.+++... +..| .+++|... ....+.++ -
T Consensus 192 ~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~ev-GvftP~~~----------~~~~L~aGeV 260 (603)
T COG0481 192 PDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEV-GIFTPKMV----------KVDELKAGEV 260 (603)
T ss_pred CCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEE-eeccCCcc----------ccccccCCce
Confidence 6788999999999999999999999999999999999888775322 2222 23344321 11223333 2
Q ss_pred C-cEEeecCcccccCCCceEEeCCCccHHHHHHHHHHHHHHHHhhhcccCCceEEEeCCcccHHHHHHHhccCCeeeeEE
Q 000923 929 G-IKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVS 1007 (1222)
Q Consensus 929 g-~~i~~~gL~~~~aG~~l~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkadt~GSlEAl~~~L~~~~~~i~i~ 1007 (1222)
| +...+..+..+..|+++..+.+.. .|+|-.| ..-.|++
T Consensus 261 G~~~a~iK~v~d~~VGDTiT~~~~p~------------------------------------~e~LpGf----k~~~P~V 300 (603)
T COG0481 261 GYIIAGIKDVRDARVGDTITLASNPA------------------------------------TEPLPGF----KEVKPMV 300 (603)
T ss_pred eEEEEeeeecccCcccceEeccCCCc------------------------------------cccCCCC----CcCCceE
Confidence 3 333455666678888887553221 1222222 1234667
Q ss_pred EeeeCccccchHHHHHhh----------hhccccCcEEEEecCCCC-----H-H-H-HHHHHHhCCeEEE--cccccchH
Q 000923 1008 GISIGPVHKKDVMRASVM----------LEKKKEYATILAFDVKVT-----P-E-A-RELAEELGVKIFI--ADIIYHLF 1067 (1222)
Q Consensus 1008 ~~~vG~It~~DV~~A~~~----------~~~~~~~a~IlaFnVk~~-----~-~-a-~~~A~~~gV~I~~--~~IIY~Li 1067 (1222)
.+|+-||..+|-..-.-+ +...+..+.-|||+.++. + + + ..+-.+.++.++. -+|+|+++
T Consensus 301 f~GlyPid~~dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~TaPsV~Y~v~ 380 (603)
T COG0481 301 FAGLYPVDSDDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYKVE 380 (603)
T ss_pred EEeecccChhHHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhhCcceEecCCceEEEEE
Confidence 777777766664332221 223345566677776632 1 2 2 2355667887775 47888765
No 31
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.96 E-value=5.5e-28 Score=289.67 Aligned_cols=247 Identities=26% Similarity=0.415 Sum_probs=179.7
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCc--c-----------------------------cccccCceeEeeeeeEeeccccc
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPAENIR 680 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~--v-----------------------------~~~e~~GIT~~iga~~~~~~~~~ 680 (1222)
..+|+|+||+|||||||+++|++.. + .....+|+|++++...+.+..
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~-- 83 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK-- 83 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC--
Confidence 3569999999999999999998321 1 112246777777766665432
Q ss_pred cchhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccC--CCChhHHHHHHHHHhcCC-ceEEEEeee
Q 000923 681 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMRNT-EFIVALNKV 757 (1222)
Q Consensus 681 ~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~d--Gv~~qT~e~l~~lk~~~v-P~IVviNKi 757 (1222)
..|+|||||||.+|...+.+++..+|++|||||+.+ ++.+||.+++.++...++ |+|||+||+
T Consensus 84 --------------~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~ 149 (425)
T PRK12317 84 --------------YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKM 149 (425)
T ss_pred --------------eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcc
Confidence 359999999999999888889999999999999999 999999999999998887 589999999
Q ss_pred ccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHH
Q 000923 758 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 837 (1222)
Q Consensus 758 Dl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i 837 (1222)
|++. |.. ..+......+...+...++.. ..+++|++||++|.||.++...+
T Consensus 150 Dl~~-~~~------------------~~~~~~~~~i~~~l~~~g~~~----------~~~~ii~iSA~~g~gi~~~~~~~ 200 (425)
T PRK12317 150 DAVN-YDE------------------KRYEEVKEEVSKLLKMVGYKP----------DDIPFIPVSAFEGDNVVKKSENM 200 (425)
T ss_pred cccc-ccH------------------HHHHHHHHHHHHHHHhhCCCc----------CcceEEEeecccCCCccccccCC
Confidence 9973 210 112222233334444445431 24689999999999999866554
Q ss_pred HHHHHHHHHHhhh--------ccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCC
Q 000923 838 VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 909 (1222)
Q Consensus 838 ~~~~~~~l~e~l~--------~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~ 909 (1222)
.||..+.|++.+. ...||++.|.++|.++|.|+++.|+|.+|+|++||.|++++.+ ..
T Consensus 201 ~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~--~~------------ 266 (425)
T PRK12317 201 PWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAG--VV------------ 266 (425)
T ss_pred CcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCC--Ce------------
Confidence 4443344443332 2457899999999999999999999999999999999987653 12
Q ss_pred cceeeeeeeeehhhhccc-cC--cEEeecCccc
Q 000923 910 KELRVKGTYLHHKQIKAA-QG--IKITAQGLEH 939 (1222)
Q Consensus 910 ~~~rvk~~~~~~~ev~aa-~g--~~i~~~gL~~ 939 (1222)
.+|++++.|+..+..| +| +.+.+.+++.
T Consensus 267 --~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~ 297 (425)
T PRK12317 267 --GEVKSIEMHHEELPQAEPGDNIGFNVRGVGK 297 (425)
T ss_pred --EEEEEEEECCcccCEECCCCeEEEEECCCCH
Confidence 3455566666655544 34 4445556543
No 32
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.7e-27 Score=269.74 Aligned_cols=248 Identities=29% Similarity=0.435 Sum_probs=196.4
Q ss_pred EEEEEccCCCCchhhhhhhcCCc---ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~---v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
+|+.+||++||||||+.+|.+.. ..+...+|+|+++|.++++.... .+.|||+|||++|..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~----------------~~~fIDvpgh~~~i~ 65 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG----------------VMGFIDVPGHPDFIS 65 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC----------------ceEEeeCCCcHHHHH
Confidence 68999999999999999998754 34556789999999999876643 499999999999999
Q ss_pred HHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCce-EEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~-IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.+..++...|++||||++++|+++||.|||.+|..++++- |||+||+|++.. + +....
T Consensus 66 ~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~------~---------------r~e~~ 124 (447)
T COG3276 66 NLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE------A---------------RIEQK 124 (447)
T ss_pred HHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH------H---------------HHHHH
Confidence 9999999999999999999999999999999999999886 999999999731 0 12222
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccccccceEEEEEEEcCce
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 869 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~G 869 (1222)
+..|...+. + ...++|++|+.+|+||.+|-+.|..+.. ....+...+|+..|..+|.++|.|
T Consensus 125 i~~Il~~l~---l------------~~~~i~~~s~~~g~GI~~Lk~~l~~L~~---~~e~d~~~~fri~IDraFtVKGvG 186 (447)
T COG3276 125 IKQILADLS---L------------ANAKIFKTSAKTGRGIEELKNELIDLLE---EIERDEQKPFRIAIDRAFTVKGVG 186 (447)
T ss_pred HHHHHhhcc---c------------ccccccccccccCCCHHHHHHHHHHhhh---hhhhccCCceEEEEeeEEEecccc
Confidence 333433332 1 3458899999999999999999988764 122356788999999999999999
Q ss_pred eEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cC--cEEeecCcccccCCCce
Q 000923 870 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QG--IKITAQGLEHAIAGTGL 946 (1222)
Q Consensus 870 ~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g--~~i~~~gL~~~~aG~~l 946 (1222)
+|++|.+.+|.+++||.+++.|.+ ++++|++++.|...+..| +| +-+++.|.+.-..-+++
T Consensus 187 TVVtGtv~sG~V~v~D~L~l~p~~----------------k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~ 250 (447)
T COG3276 187 TVVTGTVLSGEVKVGDKLYLSPIN----------------KEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGD 250 (447)
T ss_pred EEEEeEEeeeeEEECCEEEEecCC----------------CeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhccc
Confidence 999999999999999999987654 346677777776665554 44 44455555444445555
Q ss_pred EEeCCC
Q 000923 947 YVVGPD 952 (1222)
Q Consensus 947 ~v~~~e 952 (1222)
++++++
T Consensus 251 ~L~~~~ 256 (447)
T COG3276 251 WLLKPE 256 (447)
T ss_pred EeccCC
Confidence 555444
No 33
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.95 E-value=3.7e-27 Score=282.48 Aligned_cols=257 Identities=27% Similarity=0.397 Sum_probs=180.1
Q ss_pred CEEEEEccCCCCchhhhhhhcCC--cc-----------------------------cccccCceeEeeeeeEeecccccc
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGT--NV-----------------------------QEGEAGGITQQIGATYFPAENIRE 681 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~--~v-----------------------------~~~e~~GIT~~iga~~~~~~~~~~ 681 (1222)
.+|+|+||+|||||||+++|+.. .+ .....+|+|.+++...+.+..
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~--- 84 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK--- 84 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC---
Confidence 45999999999999999999741 11 112345778777776665543
Q ss_pred chhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCC---CChhHHHHHHHHHhcCC-ceEEEEeee
Q 000923 682 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESLNLLKMRNT-EFIVALNKV 757 (1222)
Q Consensus 682 ~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dG---v~~qT~e~l~~lk~~~v-P~IVviNKi 757 (1222)
..|+|||||||..|...+.+++..+|++|||||++++ ..+||.+++.++...++ |+|||+||+
T Consensus 85 -------------~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 85 -------------YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred -------------eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 3499999999999999999999999999999999999 88999999988887775 688999999
Q ss_pred ccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHH
Q 000923 758 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 837 (1222)
Q Consensus 758 Dl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i 837 (1222)
|++. |.. ..+......+...+...++.. ..++||++||++|.||.++...+
T Consensus 152 Dl~~-~~~------------------~~~~~~~~ei~~~~~~~g~~~----------~~~~~i~iSA~~g~ni~~~~~~~ 202 (426)
T TIGR00483 152 DSVN-YDE------------------EEFEAIKKEVSNLIKKVGYNP----------DTVPFIPISAWNGDNVIKKSENT 202 (426)
T ss_pred hccC-ccH------------------HHHHHHHHHHHHHHHHcCCCc----------ccceEEEeeccccccccccccCC
Confidence 9962 211 111222233444444445431 34699999999999998744433
Q ss_pred HHHHHHHHHHhhh--------ccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCC
Q 000923 838 VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 909 (1222)
Q Consensus 838 ~~~~~~~l~e~l~--------~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~ 909 (1222)
.||....|.+.+. ...||++.|.+++.++|.|+++.|+|.+|+|++||.|++++.+ .
T Consensus 203 ~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~--~------------- 267 (426)
T TIGR00483 203 PWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG--V------------- 267 (426)
T ss_pred ccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCC--c-------------
Confidence 3322222222221 2457999999999999999999999999999999999987643 1
Q ss_pred cceeeeeeeeehhhhccc-cC--cEEeecCcccccCCCceEEeC
Q 000923 910 KELRVKGTYLHHKQIKAA-QG--IKITAQGLEHAIAGTGLYVVG 950 (1222)
Q Consensus 910 ~~~rvk~~~~~~~ev~aa-~g--~~i~~~gL~~~~aG~~l~v~~ 950 (1222)
...|+++++++..+..| +| +.+.+.+++....-.+.+++.
T Consensus 268 -~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~ 310 (426)
T TIGR00483 268 -SGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGH 310 (426)
T ss_pred -EEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEec
Confidence 23455666666655544 44 334455554433333444443
No 34
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.95 E-value=2.3e-27 Score=288.26 Aligned_cols=279 Identities=18% Similarity=0.259 Sum_probs=190.6
Q ss_pred ccCCCCEEEEEccCCCCchhhhhhhcCCccccc----------------------ccCceeEeeeeeEeeccccccchhh
Q 000923 628 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG----------------------EAGGITQQIGATYFPAENIRERTRE 685 (1222)
Q Consensus 628 ~~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~----------------------e~~GIT~~iga~~~~~~~~~~~~~~ 685 (1222)
..+|+ |+|+||+|+|||||+++|+...-... ..+|||+......+
T Consensus 8 ~~~Rn--i~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~----------- 74 (526)
T PRK00741 8 AKRRT--FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQF----------- 74 (526)
T ss_pred hcCCE--EEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEE-----------
Confidence 34666 99999999999999999974211111 11233333332222
Q ss_pred cccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCccc
Q 000923 686 LKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKT 765 (1222)
Q Consensus 686 ~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~ 765 (1222)
.|....|+|||||||.+|...++++++.+|++|||||+.+|+..+|..+|.++...++|+|+|+||||+..
T Consensus 75 -----~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~---- 145 (526)
T PRK00741 75 -----PYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG---- 145 (526)
T ss_pred -----EECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc----
Confidence 33345699999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCchHHHHHHHhhHHHHHHHHH-----------------------------------------HHHHHHHHHHHcCCch
Q 000923 766 CRNAPIVKAIKQQNTDVQNEFNM-----------------------------------------RLVQIVTQLKEQGMNT 804 (1222)
Q Consensus 766 ~~~a~i~~~l~~q~~~~~~~~~~-----------------------------------------~l~~i~~~L~e~gl~~ 804 (1222)
+++...+.. ++..|.. .+....+.+++.++..
T Consensus 146 ---a~~~~~l~~----i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~ 218 (526)
T PRK00741 146 ---REPLELLDE----IEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGE 218 (526)
T ss_pred ---cCHHHHHHH----HHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcc
Confidence 222222211 1110000 0001111111111111
Q ss_pred hhh------------------hccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHh-----hh-ccccccceEE
Q 000923 805 ELY------------------YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----LT-FRNELQCTVL 860 (1222)
Q Consensus 805 e~~------------------~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~-----l~-~~~~~~~~Vl 860 (1222)
+.+ ......|..+||+++||++|.||..||+.|+.++|.|.... +. ...++.+.|+
T Consensus 219 ~~~~~l~~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VF 298 (526)
T PRK00741 219 DLAEQLREELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVF 298 (526)
T ss_pred cHHHHHHHHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEE
Confidence 100 00112367799999999999999999999999998875321 11 1345899999
Q ss_pred EEEE---EcCceeEEEEEEEeeeecCCCEEEEccCCC-ceeeeeeeccCCCCCcceeeeeeeeehhhhcc-ccCcEEeec
Q 000923 861 EVKV---IEGHGTTIDVVLVNGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIKA-AQGIKITAQ 935 (1222)
Q Consensus 861 Ev~~---~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g-~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~a-a~g~~i~~~ 935 (1222)
.+.. .+++|.+++++|++|+|+.|+.|....++. ..++.+..++... ...+.. .+|.++++.
T Consensus 299 K~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~-------------~~~v~~a~aGDIv~v~ 365 (526)
T PRK00741 299 KIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQD-------------REHVEEAYAGDIIGLH 365 (526)
T ss_pred EEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCC-------------ceECceeCCCCEEEEE
Confidence 9873 458999999999999999999998765542 2334444443322 122333 379999999
Q ss_pred CcccccCCCceEE
Q 000923 936 GLEHAIAGTGLYV 948 (1222)
Q Consensus 936 gL~~~~aG~~l~v 948 (1222)
++....+|++|..
T Consensus 366 ~l~~~~~GDTL~~ 378 (526)
T PRK00741 366 NHGTIQIGDTFTQ 378 (526)
T ss_pred CCCCCccCCCccC
Confidence 9999999999963
No 35
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.95 E-value=6.7e-27 Score=288.57 Aligned_cols=213 Identities=28% Similarity=0.350 Sum_probs=165.9
Q ss_pred ccCCCCEEEEEccCCCCchhhhhhhcCCc--c-------------cccccCceeEeeeeeEeeccccccchhhccccccc
Q 000923 628 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--V-------------QEGEAGGITQQIGATYFPAENIRERTRELKANATL 692 (1222)
Q Consensus 628 ~~~R~~~V~IvG~vdsGKTTLl~~L~~~~--v-------------~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~ 692 (1222)
.++|+ |+|+||+|||||||+++|+... + .....+|||+....+.+.|.... -
T Consensus 5 ~~iRN--i~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~d-----------g 71 (600)
T PRK05433 5 KNIRN--FSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKD-----------G 71 (600)
T ss_pred ccCCE--EEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccC-----------C
Confidence 45677 9999999999999999997421 1 12335678877766666553110 0
Q ss_pred ccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHH
Q 000923 693 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 772 (1222)
Q Consensus 693 ~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~ 772 (1222)
....|+|||||||.+|...+.+++..||++|||||+++|++.||..+|..+...++|+|+|+||+|+.. +++.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~-------a~~~ 144 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA-------ADPE 144 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc-------ccHH
Confidence 113499999999999999999999999999999999999999999999998888999999999999862 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhcc
Q 000923 773 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFR 852 (1222)
Q Consensus 773 ~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~ 852 (1222)
.. ...+... .++. ...++++||++|.||.+|+++|..+++.+.. ...
T Consensus 145 ~v---------------~~ei~~~---lg~~------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~---~~~ 191 (600)
T PRK05433 145 RV---------------KQEIEDV---IGID------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKG---DPD 191 (600)
T ss_pred HH---------------HHHHHHH---hCCC------------cceEEEEecCCCCCHHHHHHHHHHhCccccC---CCC
Confidence 00 0111111 1221 1258999999999999999999988876532 346
Q ss_pred ccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCC
Q 000923 853 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 893 (1222)
Q Consensus 853 ~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~ 893 (1222)
.|+++.|++++++++.|.++.++|++|+|+.||.|.+++++
T Consensus 192 ~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~ 232 (600)
T PRK05433 192 APLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTG 232 (600)
T ss_pred CCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCC
Confidence 78999999999999999999999999999999999887754
No 36
>PRK12739 elongation factor G; Reviewed
Probab=99.95 E-value=1.1e-26 Score=293.01 Aligned_cols=284 Identities=23% Similarity=0.250 Sum_probs=198.6
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCc--------c----------cccccCceeEeeeeeEeeccccccchhhccccc
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTN--------V----------QEGEAGGITQQIGATYFPAENIRERTRELKANA 690 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~--------v----------~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~ 690 (1222)
.+|+ |+|+||+|||||||+++|+... + .....+|||+++...++.|..
T Consensus 7 ~irn--i~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~------------ 72 (691)
T PRK12739 7 KTRN--IGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG------------ 72 (691)
T ss_pred CeeE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC------------
Confidence 4565 9999999999999999997421 0 111356777777776666543
Q ss_pred ccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCch
Q 000923 691 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 770 (1222)
Q Consensus 691 ~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~ 770 (1222)
..|+|||||||.+|...+.++++.+|++|||||+..|++.||..+|.++...++|+||++||||+... ....
T Consensus 73 ----~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~----~~~~ 144 (691)
T PRK12739 73 ----HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA----DFFR 144 (691)
T ss_pred ----EEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC----CHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999998731 0001
Q ss_pred HHHHHHH-----------------------------------------------------hhHHHHHHHHHHHHHHHHHH
Q 000923 771 IVKAIKQ-----------------------------------------------------QNTDVQNEFNMRLVQIVTQL 797 (1222)
Q Consensus 771 i~~~l~~-----------------------------------------------------q~~~~~~~~~~~l~~i~~~L 797 (1222)
+...+.. .....+..+-+.+....+.|
T Consensus 145 ~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~l 224 (691)
T PRK12739 145 SVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEEL 224 (691)
T ss_pred HHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHH
Confidence 1111111 11111122222222223333
Q ss_pred HHcCCchhhhhc---------cccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHh----------------hhcc
Q 000923 798 KEQGMNTELYYK---------NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK----------------LTFR 852 (1222)
Q Consensus 798 ~e~gl~~e~~~~---------~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~----------------l~~~ 852 (1222)
++.++....+.. ....+..+|++++||++|.|+..||+.|+.+++.+.... .++.
T Consensus 225 le~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 304 (691)
T PRK12739 225 MEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDD 304 (691)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCC
Confidence 333332211100 011256789999999999999999999999998775311 1235
Q ss_pred ccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCC-CceeeeeeeccCCCCCcceeeeeeeeehhhhcc-ccCc
Q 000923 853 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA-AQGI 930 (1222)
Q Consensus 853 ~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~-g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~a-a~g~ 930 (1222)
.++.+.|+.+.++++.|.+++++|++|+|+.||.|...... ...+.+|..|.... ..++.. .+|.
T Consensus 305 ~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~-------------~~~v~~~~aGd 371 (691)
T PRK12739 305 EPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANK-------------REEIKEVYAGD 371 (691)
T ss_pred CCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCC-------------cccccccCCCC
Confidence 57899999999999999999999999999999988755432 22333444333221 112233 3688
Q ss_pred EEeecCcccccCCCceE
Q 000923 931 KITAQGLEHAIAGTGLY 947 (1222)
Q Consensus 931 ~i~~~gL~~~~aG~~l~ 947 (1222)
++++.||....+|++|.
T Consensus 372 I~~i~gl~~~~~gdtl~ 388 (691)
T PRK12739 372 IAAAVGLKDTTTGDTLC 388 (691)
T ss_pred EEEEeCCCcccCCCEEe
Confidence 99999999888998885
No 37
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.7e-27 Score=274.67 Aligned_cols=289 Identities=23% Similarity=0.285 Sum_probs=220.4
Q ss_pred cccCCCCEEEEEccCCCCchhhhhhhcCCc------------------ccccccCceeEeeeeeEeeccccccchhhccc
Q 000923 627 EENLRSPICCIMGHVDTGKTKLLDCIRGTN------------------VQEGEAGGITQQIGATYFPAENIRERTRELKA 688 (1222)
Q Consensus 627 ~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~------------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~ 688 (1222)
...+|+ |+|+.|.++|||||..+++... ....+.+|||++.+++++.|..
T Consensus 36 ~~k~RN--Igi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~---------- 103 (721)
T KOG0465|consen 36 LNKIRN--IGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD---------- 103 (721)
T ss_pred hhhhcc--cceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc----------
Confidence 346777 9999999999999999987321 1223457899999999998874
Q ss_pred ccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccC------
Q 000923 689 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG------ 762 (1222)
Q Consensus 689 ~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~------ 762 (1222)
..|+|||||||.+|+-.+.|.++..|++|||+++..|++.||...|++++++++|.|+++||||+.+.
T Consensus 104 ------~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l 177 (721)
T KOG0465|consen 104 ------YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTL 177 (721)
T ss_pred ------ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999997541
Q ss_pred -------------------------------------cccCC-----CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc
Q 000923 763 -------------------------------------WKTCR-----NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQ 800 (1222)
Q Consensus 763 -------------------------------------w~~~~-----~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~ 800 (1222)
|.... ..+++..|..+..+.|+.+-+.+..+.+.|.++
T Consensus 178 ~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~ 257 (721)
T KOG0465|consen 178 NQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEM 257 (721)
T ss_pred HHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 22111 246677778888888889988898888888887
Q ss_pred CCchhhhhc---------cccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHH---hhh--------------c-cc
Q 000923 801 GMNTELYYK---------NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---KLT--------------F-RN 853 (1222)
Q Consensus 801 gl~~e~~~~---------~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e---~l~--------------~-~~ 853 (1222)
.|....... ...-+.++||++.||+.+.||+.||+.++.|+|.|..- .+. . .+
T Consensus 258 fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~ 337 (721)
T KOG0465|consen 258 FLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKD 337 (721)
T ss_pred HhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCC
Confidence 766443321 12236889999999999999999999999999876331 111 1 23
Q ss_pred cccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cCcEE
Q 000923 854 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QGIKI 932 (1222)
Q Consensus 854 ~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g~~i 932 (1222)
||.+..+.+...+. |...+++||+|+|+.||+|....+. ..+ +|-.|+.+|. .. ..+|..+ +|.+|
T Consensus 338 Pfv~LAFKle~g~f-GqLTyvRvYqG~L~kG~~iyN~rtg-KKv-rv~RL~rmHa--------~~--medV~~v~AG~I~ 404 (721)
T KOG0465|consen 338 PFVALAFKLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRTG-KKV-RVGRLVRMHA--------ND--MEDVNEVLAGDIC 404 (721)
T ss_pred ceeeeEEEeeecCc-cceEEEEEeeeeecCCcEEEecCCC-cee-EhHHHhHhcc--------cc--cchhhhhhcccee
Confidence 67888888777666 9999999999999999999876543 222 2222222221 11 1234433 68899
Q ss_pred eecCcccccCCCceE
Q 000923 933 TAQGLEHAIAGTGLY 947 (1222)
Q Consensus 933 ~~~gL~~~~aG~~l~ 947 (1222)
++.|+ ....|++|.
T Consensus 405 alfGi-dcasGDTft 418 (721)
T KOG0465|consen 405 ALFGI-DCASGDTFT 418 (721)
T ss_pred eeecc-ccccCceec
Confidence 99999 455787775
No 38
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.94 E-value=2.8e-26 Score=272.58 Aligned_cols=237 Identities=24% Similarity=0.331 Sum_probs=159.8
Q ss_pred EEEEEccCCCCchhhhhhhcCCc--c-------------------------------cccccCceeEeeeeeEeeccccc
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTN--V-------------------------------QEGEAGGITQQIGATYFPAENIR 680 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~--v-------------------------------~~~e~~GIT~~iga~~~~~~~~~ 680 (1222)
.|+|+||+|||||||+++|+... + .....+|+|++++..++.+.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 59999999999999999997321 1 11123556666555555443
Q ss_pred cchhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEeeecc
Q 000923 681 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDR 759 (1222)
Q Consensus 681 ~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNKiDl 759 (1222)
...++|||||||.+|...+..++..+|++|||||+..|+++||.+++.++...++| +|||+||||+
T Consensus 79 -------------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 79 -------------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred -------------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 24599999999999999999999999999999999999999999999999998875 7889999999
Q ss_pred ccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 760 LYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 760 ~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
+. |. .. .+......+...+...++ ..+++||+||++|.||..+...+.|
T Consensus 146 ~~-~~----~~--------------~~~~i~~~~~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~w 194 (406)
T TIGR02034 146 VD-YD----EE--------------VFENIKKDYLAFAEQLGF------------RDVTFIPLSALKGDNVVSRSESMPW 194 (406)
T ss_pred cc-ch----HH--------------HHHHHHHHHHHHHHHcCC------------CCccEEEeecccCCCCcccccCCCc
Confidence 72 21 00 111111222222333332 2468999999999999864332222
Q ss_pred HHHHHHHHhh--------hccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcc
Q 000923 840 WTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKE 911 (1222)
Q Consensus 840 ~~~~~l~e~l--------~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~ 911 (1222)
|-.+.|.+.| ....++++.|..++.....+..+.|+|.+|+|++||.|++.+.+ ..
T Consensus 195 y~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~~-------------- 258 (406)
T TIGR02034 195 YSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSG--RS-------------- 258 (406)
T ss_pred cchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCC--cE--------------
Confidence 2111222211 22456888888876543333336799999999999999987642 22
Q ss_pred eeeeeeeeehhhhccc-cCcEEe
Q 000923 912 LRVKGTYLHHKQIKAA-QGIKIT 933 (1222)
Q Consensus 912 ~rvk~~~~~~~ev~aa-~g~~i~ 933 (1222)
.+|+++++++..+..+ +|..+.
T Consensus 259 ~~VksI~~~~~~~~~a~~G~~v~ 281 (406)
T TIGR02034 259 SRVARIVTFDGDLEQARAGQAVT 281 (406)
T ss_pred EEEEEEEECCcccCEeCCCCEEE
Confidence 3455556666555544 454433
No 39
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.94 E-value=1.3e-26 Score=285.78 Aligned_cols=212 Identities=26% Similarity=0.343 Sum_probs=164.0
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCc--c-------------cccccCceeEeeeeeEeeccccccchhhcccccccc
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTN--V-------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLK 693 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~--v-------------~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~ 693 (1222)
++|| |+|+||+|||||||+++|+... + .....+|||+......+.|.... -.
T Consensus 2 ~iRN--i~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~-----------g~ 68 (595)
T TIGR01393 2 NIRN--FSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKD-----------GE 68 (595)
T ss_pred CeeE--EEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCC-----------CC
Confidence 3576 9999999999999999997531 0 11234678877766665553100 00
Q ss_pred cCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHH
Q 000923 694 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 773 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~ 773 (1222)
...|+|||||||.+|..++.+++..||++|||||+++|++.||..+|..+...++|+|+|+||+|+.. .+...
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~-------~~~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPS-------ADPER 141 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCc-------cCHHH
Confidence 13489999999999999999999999999999999999999999999888888999999999999862 11100
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccc
Q 000923 774 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRN 853 (1222)
Q Consensus 774 ~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~ 853 (1222)
+ ...+... .++. ..+++++||++|.||.+|+++|..+++.+.. ....
T Consensus 142 --------~-------~~el~~~---lg~~------------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~---~~~~ 188 (595)
T TIGR01393 142 --------V-------KKEIEEV---IGLD------------ASEAILASAKTGIGIEEILEAIVKRVPPPKG---DPDA 188 (595)
T ss_pred --------H-------HHHHHHH---hCCC------------cceEEEeeccCCCCHHHHHHHHHHhCCCCCC---CCCC
Confidence 0 0111111 1221 1258999999999999999999988765532 3467
Q ss_pred cccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCC
Q 000923 854 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 893 (1222)
Q Consensus 854 ~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~ 893 (1222)
|+++.|++++++++.|+++.++|++|+|+.||.|.+++++
T Consensus 189 pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~ 228 (595)
T TIGR01393 189 PLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTG 228 (595)
T ss_pred CeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCC
Confidence 8999999999999999999999999999999999887764
No 40
>PRK00007 elongation factor G; Reviewed
Probab=99.94 E-value=2.5e-26 Score=289.65 Aligned_cols=286 Identities=23% Similarity=0.238 Sum_probs=199.8
Q ss_pred cccCCCCEEEEEccCCCCchhhhhhhcCCc--------c----------cccccCceeEeeeeeEeeccccccchhhccc
Q 000923 627 EENLRSPICCIMGHVDTGKTKLLDCIRGTN--------V----------QEGEAGGITQQIGATYFPAENIRERTRELKA 688 (1222)
Q Consensus 627 ~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~--------v----------~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~ 688 (1222)
..++|+ |+|+||+|||||||+++|+... + .....+|||++.....+.|.
T Consensus 7 ~~~Irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~----------- 73 (693)
T PRK00007 7 LERYRN--IGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----------- 73 (693)
T ss_pred ccceeE--EEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-----------
Confidence 345676 9999999999999999997311 1 11135677777766666554
Q ss_pred ccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCC
Q 000923 689 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 768 (1222)
Q Consensus 689 ~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~ 768 (1222)
...|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||||+... ..
T Consensus 74 -----~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~----~~ 144 (693)
T PRK00007 74 -----DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA----DF 144 (693)
T ss_pred -----CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC----CH
Confidence 245999999999999999999999999999999999999999999999999999999999999998731 00
Q ss_pred chHHHHH-----------------------------------------------------HHhhHHHHHHHHHHHHHHHH
Q 000923 769 APIVKAI-----------------------------------------------------KQQNTDVQNEFNMRLVQIVT 795 (1222)
Q Consensus 769 a~i~~~l-----------------------------------------------------~~q~~~~~~~~~~~l~~i~~ 795 (1222)
..+...+ .......+..+-+.+....+
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd 224 (693)
T PRK00007 145 YRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADE 224 (693)
T ss_pred HHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCH
Confidence 0011111 11111122222222333333
Q ss_pred HHHHcCCchhhhhcc---------ccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHh-----------------h
Q 000923 796 QLKEQGMNTELYYKN---------KDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----------------L 849 (1222)
Q Consensus 796 ~L~e~gl~~e~~~~~---------~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~-----------------l 849 (1222)
.|++.++....+... ...+..+|++++||+++.||..||+.|+.+++.|.... .
T Consensus 225 ~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~ 304 (693)
T PRK00007 225 ELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKA 304 (693)
T ss_pred HHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecC
Confidence 444433321111000 11257889999999999999999999999998775311 1
Q ss_pred hccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCC-CceeeeeeeccCCCCCcceeeeeeeeehhhhcc-c
Q 000923 850 TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA-A 927 (1222)
Q Consensus 850 ~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~-g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~a-a 927 (1222)
++..++.+.|+.+.++++.|.+++++|++|+|+.||.|...... ...+.+|..+.... ..++.. .
T Consensus 305 ~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~-------------~~~v~~~~ 371 (693)
T PRK00007 305 SDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANK-------------REEIKEVR 371 (693)
T ss_pred CCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCC-------------cccccccC
Confidence 23456889999999999999999999999999999998754332 12333444332211 122333 3
Q ss_pred cCcEEeecCcccccCCCceE
Q 000923 928 QGIKITAQGLEHAIAGTGLY 947 (1222)
Q Consensus 928 ~g~~i~~~gL~~~~aG~~l~ 947 (1222)
+|.++++.||....+|++|.
T Consensus 372 aGdI~~i~gl~~~~~GdtL~ 391 (693)
T PRK00007 372 AGDIAAAVGLKDTTTGDTLC 391 (693)
T ss_pred CCcEEEEeCCccCCcCCEee
Confidence 78999999998888998884
No 41
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.94 E-value=3e-26 Score=289.16 Aligned_cols=286 Identities=23% Similarity=0.232 Sum_probs=202.0
Q ss_pred cccCCCCEEEEEccCCCCchhhhhhhcCCc--------cc----------ccccCceeEeeeeeEeeccccccchhhccc
Q 000923 627 EENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQ----------EGEAGGITQQIGATYFPAENIRERTRELKA 688 (1222)
Q Consensus 627 ~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~--------v~----------~~e~~GIT~~iga~~~~~~~~~~~~~~~~~ 688 (1222)
..++|+ |+|+||+|||||||+++|+... +. ....+|||++.....+.|..
T Consensus 7 ~~~irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~---------- 74 (689)
T TIGR00484 7 LNRFRN--IGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG---------- 74 (689)
T ss_pred cccccE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC----------
Confidence 345776 9999999999999999996321 11 11246777777666666543
Q ss_pred ccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCC
Q 000923 689 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 768 (1222)
Q Consensus 689 ~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~ 768 (1222)
..|+|||||||.+|...+.++++.+|++|||||+.+|++.||..+|.++...++|+|||+||||+.... .
T Consensus 75 ------~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~----~ 144 (689)
T TIGR00484 75 ------HRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN----F 144 (689)
T ss_pred ------eEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC----H
Confidence 459999999999999999999999999999999999999999999999999999999999999987310 0
Q ss_pred chHHHHH----------------------------------------------------HHhhHHHHHHHHHHHHHHHHH
Q 000923 769 APIVKAI----------------------------------------------------KQQNTDVQNEFNMRLVQIVTQ 796 (1222)
Q Consensus 769 a~i~~~l----------------------------------------------------~~q~~~~~~~~~~~l~~i~~~ 796 (1222)
..+...+ .......+..+-+.+....+.
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~ 224 (689)
T TIGR00484 145 LRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEE 224 (689)
T ss_pred HHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 0111111 111112223333333344444
Q ss_pred HHHcCCch-----hhhh----ccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHh----------------hhc
Q 000923 797 LKEQGMNT-----ELYY----KNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK----------------LTF 851 (1222)
Q Consensus 797 L~e~gl~~-----e~~~----~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~----------------l~~ 851 (1222)
|++.++.. +.++ .....+..+|++++||++|.|+..||+.|+.+++.|.... .++
T Consensus 225 lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~ 304 (689)
T TIGR00484 225 LMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASD 304 (689)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCC
Confidence 54444332 1111 0112357799999999999999999999999998775311 122
Q ss_pred cccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCC-CceeeeeeeccCCCCCcceeeeeeeeehhhhc-cccC
Q 000923 852 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQG 929 (1222)
Q Consensus 852 ~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~-g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~g 929 (1222)
..++.+.|+.+.++++.|.++.++|++|+|+.||.|...... ...+.+|..+.... ..++. +.+|
T Consensus 305 ~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~-------------~~~v~~~~aG 371 (689)
T TIGR00484 305 DEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANN-------------REEIKEVRAG 371 (689)
T ss_pred CCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCC-------------cccccccCCC
Confidence 456899999999999999999999999999999999765332 22333444332211 11222 3378
Q ss_pred cEEeecCcccccCCCceE
Q 000923 930 IKITAQGLEHAIAGTGLY 947 (1222)
Q Consensus 930 ~~i~~~gL~~~~aG~~l~ 947 (1222)
.++++.||....+|++|.
T Consensus 372 dI~~i~gl~~~~~gdtl~ 389 (689)
T TIGR00484 372 DICAAIGLKDTTTGDTLC 389 (689)
T ss_pred CEEEEcCCCCCCCCCEEe
Confidence 999999999888899885
No 42
>PRK13351 elongation factor G; Reviewed
Probab=99.94 E-value=7.9e-26 Score=285.98 Aligned_cols=282 Identities=23% Similarity=0.263 Sum_probs=196.8
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcc--------cc----------cccCceeEeeeeeEeeccccccchhhccccc
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNV--------QE----------GEAGGITQQIGATYFPAENIRERTRELKANA 690 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v--------~~----------~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~ 690 (1222)
++|+ |+|+||+|||||||+++|+...- .. ...+|+|+......+.|
T Consensus 7 ~irn--i~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-------------- 70 (687)
T PRK13351 7 QIRN--IGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-------------- 70 (687)
T ss_pred cccE--EEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--------------
Confidence 4565 99999999999999999974211 00 11244444444444443
Q ss_pred ccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCch
Q 000923 691 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 770 (1222)
Q Consensus 691 ~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~ 770 (1222)
....|+|||||||.+|..++.++++.+|++|||||+.++++.+|..+|..+...++|+|||+||+|+.. ++
T Consensus 71 --~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~-------~~ 141 (687)
T PRK13351 71 --DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVG-------AD 141 (687)
T ss_pred --CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCC-------CC
Confidence 334599999999999999999999999999999999999999999999999999999999999999873 22
Q ss_pred HHHHHHH--------------------------------------------------------hhHHHHHHHHHHHHHHH
Q 000923 771 IVKAIKQ--------------------------------------------------------QNTDVQNEFNMRLVQIV 794 (1222)
Q Consensus 771 i~~~l~~--------------------------------------------------------q~~~~~~~~~~~l~~i~ 794 (1222)
+...+.. .....+..+-+.+....
T Consensus 142 ~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d 221 (687)
T PRK13351 142 LFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFD 221 (687)
T ss_pred HHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 2222221 11122222222222223
Q ss_pred HHHHHcCCchh-----hhhcc----ccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHH---------------hhh
Q 000923 795 TQLKEQGMNTE-----LYYKN----KDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---------------KLT 850 (1222)
Q Consensus 795 ~~L~e~gl~~e-----~~~~~----~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e---------------~l~ 850 (1222)
+.|.+.++... .+... ...+..+|++++||++|.||..||+.|+.+++.+... ..+
T Consensus 222 ~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~ 301 (687)
T PRK13351 222 DELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPD 301 (687)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCC
Confidence 33333333211 11000 0125689999999999999999999999999887531 012
Q ss_pred ccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCC-ceeeeeeeccCCCCCcceeeeeeeeehhhhc-ccc
Q 000923 851 FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQ 928 (1222)
Q Consensus 851 ~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g-~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~ 928 (1222)
+..++.+.|+++.++++.|.++.++|++|+|+.||.|.+.+.+. ..+++|..+.... ..++. +.+
T Consensus 302 ~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~-------------~~~v~~~~a 368 (687)
T PRK13351 302 PEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNK-------------REEVDRAKA 368 (687)
T ss_pred CCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCC-------------eeECCccCC
Confidence 34578999999999999999999999999999999998876542 2344444433221 11222 236
Q ss_pred CcEEeecCcccccCCCceEE
Q 000923 929 GIKITAQGLEHAIAGTGLYV 948 (1222)
Q Consensus 929 g~~i~~~gL~~~~aG~~l~v 948 (1222)
|.++++.||+...+|++|..
T Consensus 369 GdI~~i~gl~~~~~gdtl~~ 388 (687)
T PRK13351 369 GDIVAVAGLKELETGDTLHD 388 (687)
T ss_pred CCEEEEECcccCccCCEEeC
Confidence 88899999998888998853
No 43
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.94 E-value=1.1e-25 Score=267.62 Aligned_cols=262 Identities=22% Similarity=0.230 Sum_probs=177.6
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcc---cccccCceeEeeeeeEeeccccccc----hhhcccc------cccccCCeE
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRER----TRELKAN------ATLKVPGLL 698 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v---~~~e~~GIT~~iga~~~~~~~~~~~----~~~~~~~------~~~~~~~i~ 698 (1222)
..+|+++||+|||||||+++|.+... .....+|+|..++..++.+...... +...... .......++
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 35699999999999999999976432 2344678999988766553211000 0000000 001124599
Q ss_pred eecCCCchhhHHHHHhhcccCceeEEEecccCCC-ChhHHHHHHHHHhcCC-ceEEEEeeeccccCcccCCCchHHHHHH
Q 000923 699 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 776 (1222)
Q Consensus 699 ~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv-~~qT~e~l~~lk~~~v-P~IVviNKiDl~~~w~~~~~a~i~~~l~ 776 (1222)
|||||||..|...+.+++..+|++|||||+++|+ ++||.+++.++...++ |+|||+||+|++.. ..
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~-------~~----- 151 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK-------EK----- 151 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH-------HH-----
Confidence 9999999999999999999999999999999998 8999999999988876 58999999999731 00
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhcccccc
Q 000923 777 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 856 (1222)
Q Consensus 777 ~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~~ 856 (1222)
....+..+...+... +...+++||+||++|.||+.|+++|..+++.+ ......+++
T Consensus 152 ---------~~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~---~~~~~~~~~ 207 (406)
T TIGR03680 152 ---------ALENYEEIKEFVKGT------------VAENAPIIPVSALHNANIDALLEAIEKFIPTP---ERDLDKPPL 207 (406)
T ss_pred ---------HHHHHHHHHhhhhhc------------ccCCCeEEEEECCCCCChHHHHHHHHHhCCCC---CCCCCCCcE
Confidence 001112222222211 01346999999999999999999998766433 122356789
Q ss_pred ceEEEEEEEcC--------ceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-
Q 000923 857 CTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA- 927 (1222)
Q Consensus 857 ~~VlEv~~~~g--------~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa- 927 (1222)
+.|.++|.+.+ +|+++.|+|.+|+|++||.|.+.+........... +. |. ..+|++++.++..+..|
T Consensus 208 ~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~-~~--~~-~~~V~sI~~~~~~~~~a~ 283 (406)
T TIGR03680 208 MYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTK-WE--PI-YTEITSLRAGGYKVEEAR 283 (406)
T ss_pred EEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCcccccccccc-cc--cc-ceEEeEEEECCEECCEEc
Confidence 99999997766 57799999999999999999987652100000000 00 11 24566777776666544
Q ss_pred cCcEEe
Q 000923 928 QGIKIT 933 (1222)
Q Consensus 928 ~g~~i~ 933 (1222)
+|..+.
T Consensus 284 ~G~~v~ 289 (406)
T TIGR03680 284 PGGLVG 289 (406)
T ss_pred CCCEEE
Confidence 444433
No 44
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.93 E-value=1.9e-25 Score=269.55 Aligned_cols=241 Identities=24% Similarity=0.307 Sum_probs=161.4
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCc--cc-------------------------------ccccCceeEeeeeeEeecc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTN--VQ-------------------------------EGEAGGITQQIGATYFPAE 677 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~--v~-------------------------------~~e~~GIT~~iga~~~~~~ 677 (1222)
..+.|+|+||+|+|||||+++|+... +. ....+|||++++..++.+.
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 33569999999999999999997432 11 1123456666555544433
Q ss_pred ccccchhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCC-ceEEEEee
Q 000923 678 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNK 756 (1222)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~v-P~IVviNK 756 (1222)
...++|||||||.+|...+.+++..+|++|||||+..|+++||.+++.++...++ |+|||+||
T Consensus 106 ----------------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNK 169 (474)
T PRK05124 106 ----------------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNK 169 (474)
T ss_pred ----------------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEe
Confidence 3459999999999999999999999999999999999999999999999998886 58889999
Q ss_pred eccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHH
Q 000923 757 VDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL 836 (1222)
Q Consensus 757 iDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~ 836 (1222)
||++. |.. . .+......+...+...++ ...++|||+||++|.||..+...
T Consensus 170 iD~~~-~~~----~--------------~~~~i~~~l~~~~~~~~~-----------~~~~~iipvSA~~g~ni~~~~~~ 219 (474)
T PRK05124 170 MDLVD-YSE----E--------------VFERIREDYLTFAEQLPG-----------NLDIRFVPLSALEGDNVVSQSES 219 (474)
T ss_pred ecccc-chh----H--------------HHHHHHHHHHHHHHhcCC-----------CCCceEEEEEeecCCCccccccc
Confidence 99972 210 0 111111122222222221 12469999999999999876433
Q ss_pred HHHHHHHHHHHhh--------hccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCC
Q 000923 837 LVQWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHP 908 (1222)
Q Consensus 837 i~~~~~~~l~e~l--------~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p 908 (1222)
+.||....|.+.| ....++++.|..++........+.|+|.+|+|++||.|++++.+ .
T Consensus 220 ~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~--~------------ 285 (474)
T PRK05124 220 MPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSG--K------------ 285 (474)
T ss_pred ccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCC--c------------
Confidence 2222222222211 12457888888876543322235799999999999999987643 1
Q ss_pred Ccceeeeeeeeehhhhccc-cCcEEe
Q 000923 909 MKELRVKGTYLHHKQIKAA-QGIKIT 933 (1222)
Q Consensus 909 ~~~~rvk~~~~~~~ev~aa-~g~~i~ 933 (1222)
.++|+++++|+..+..+ +|..++
T Consensus 286 --~~~VksI~~~~~~v~~A~aG~~V~ 309 (474)
T PRK05124 286 --ESNVARIVTFDGDLEEAFAGEAIT 309 (474)
T ss_pred --eEEEEEEEEcCccccCcCCCCEEE
Confidence 24455666666655544 454433
No 45
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.93 E-value=2.4e-25 Score=246.32 Aligned_cols=280 Identities=23% Similarity=0.335 Sum_probs=192.6
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccc--------------cCceeEeeeeeEeeccccccchhhcccc---------
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRERTRELKAN--------- 689 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e--------------~~GIT~~iga~~~~~~~~~~~~~~~~~~--------- 689 (1222)
.+|+++||+|||||||+++|.......|. .+|.|.++....+-+..-+.. .+...
T Consensus 118 v~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~--rlknPld~aE~~~v 195 (527)
T COG5258 118 VLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVV--RLKNPLDEAEKAAV 195 (527)
T ss_pred EEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceE--eecCcccHHHHhHh
Confidence 46899999999999999999865544432 245554444333333221100 11000
Q ss_pred cccccCCeEeecCCCchhhHHHHHhhcc--cCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCC
Q 000923 690 ATLKVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 767 (1222)
Q Consensus 690 ~~~~~~~i~~IDTPGhe~F~~~~~rg~~--~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~ 767 (1222)
..-...-+.|+||-||+.|..++.||+- ..|+.+|||.|++|++..|.|||.++....+|+|||+||||+.+
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~------ 269 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVP------ 269 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCc------
Confidence 0011234899999999999998888864 58999999999999999999999999999999999999999974
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhc---------cccCC-CceeEEEcCCCCCCChhhHHHHH
Q 000923 768 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK---------NKDRG-ETFNIVPTSAISGEGIPDLLLLL 837 (1222)
Q Consensus 768 ~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~---------~~~~g-~~v~vvpvSA~tGeGI~eLl~~i 837 (1222)
...+.. ...+|...|...+-.+-..-. ....+ ..+|||.+|+.||.|++-|..++
T Consensus 270 ddr~~~---------------v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 270 DDRFQG---------------VVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHH---------------HHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 222221 222232333222211000000 01123 37899999999999996665555
Q ss_pred HHHHHHHHHHhhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeee
Q 000923 838 VQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 917 (1222)
Q Consensus 838 ~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~ 917 (1222)
. +++..- .++...+|.++|.++|.+.|+|+++.+.|.+|+|+.||++++++.. ...+.++.|+++
T Consensus 335 ~-~Lp~rr--~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~------------~G~fr~v~vkSI 399 (527)
T COG5258 335 L-LLPKRR--RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFK------------DGKFREVVVKSI 399 (527)
T ss_pred H-hCCccc--ccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCC------------CCcEEEEEEEEE
Confidence 4 444321 4567788999999999999999999999999999999999987643 234557789999
Q ss_pred eeehhhhccc-cC--cEEeecCcccccCCCceEEeC
Q 000923 918 YLHHKQIKAA-QG--IKITAQGLEHAIAGTGLYVVG 950 (1222)
Q Consensus 918 ~~~~~ev~aa-~g--~~i~~~gL~~~~aG~~l~v~~ 950 (1222)
++|+-.|..| +| +.+++.|.+.-..-.+|++..
T Consensus 400 emh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~ 435 (527)
T COG5258 400 EMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSA 435 (527)
T ss_pred EEeeEEeccccCCcEEEEEecccCHHHHhcceEecC
Confidence 9999888777 44 345666766544455555544
No 46
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.93 E-value=3.5e-25 Score=269.26 Aligned_cols=281 Identities=18% Similarity=0.260 Sum_probs=188.4
Q ss_pred ccCCCCEEEEEccCCCCchhhhhhhcCCcccc----------------------cccCceeEeeeeeEeeccccccchhh
Q 000923 628 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQE----------------------GEAGGITQQIGATYFPAENIRERTRE 685 (1222)
Q Consensus 628 ~~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~----------------------~e~~GIT~~iga~~~~~~~~~~~~~~ 685 (1222)
..+|+ |+|+||+|+|||||+++|+...-.. ...+|||.......+.
T Consensus 9 ~~~Rn--iaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~---------- 76 (527)
T TIGR00503 9 DKRRT--FAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP---------- 76 (527)
T ss_pred ccCCE--EEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe----------
Confidence 34565 9999999999999999986321110 1123344433333333
Q ss_pred cccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCccc
Q 000923 686 LKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKT 765 (1222)
Q Consensus 686 ~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~ 765 (1222)
|....|+|||||||.+|...+++++..+|++|+|||+..|+..+|..+|..++..++|+|||+||||+...
T Consensus 77 ------~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~--- 147 (527)
T TIGR00503 77 ------YRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIR--- 147 (527)
T ss_pred ------eCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCC---
Confidence 33456999999999999999999999999999999999999999999999999999999999999998521
Q ss_pred CCCchHHHHHHHhhHHH---------------------------------------------HH-HH-----HHHHHHHH
Q 000923 766 CRNAPIVKAIKQQNTDV---------------------------------------------QN-EF-----NMRLVQIV 794 (1222)
Q Consensus 766 ~~~a~i~~~l~~q~~~~---------------------------------------------~~-~~-----~~~l~~i~ 794 (1222)
....+...+....... .. .+ ...+..+.
T Consensus 148 -~~~~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 226 (527)
T TIGR00503 148 -DPLELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLR 226 (527)
T ss_pred -CHHHHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHH
Confidence 0001111111100000 00 00 00000000
Q ss_pred ---HHHHHc--CCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHh-----hh-ccccccceEEEEE
Q 000923 795 ---TQLKEQ--GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----LT-FRNELQCTVLEVK 863 (1222)
Q Consensus 795 ---~~L~e~--gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~-----l~-~~~~~~~~VlEv~ 863 (1222)
+.+.+. .+... ....|..+||+++||+++.||..||+.|+.++|+|.... +. ...+|.+.|+.+.
T Consensus 227 ~~le~~~~~~~~~~~~----~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~ 302 (527)
T TIGR00503 227 DELELVEGASNEFDLA----AFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQ 302 (527)
T ss_pred HHHHHHhhhccccCHH----HHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEE
Confidence 111110 01111 112367899999999999999999999999998875321 11 1356899999997
Q ss_pred E--E-cCceeEEEEEEEeeeecCCCEEEEccCCC-ceeeeeeeccCCCCCcceeeeeeeeehhhhc-cccCcEEeecCcc
Q 000923 864 V--I-EGHGTTIDVVLVNGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLE 938 (1222)
Q Consensus 864 ~--~-~g~G~v~~~~V~~GtLk~GD~ivv~g~~g-~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~g~~i~~~gL~ 938 (1222)
. + +++|.+++++|++|+|+.|+.|.....+. ..++++..++... ...+. +.+|.++++.++.
T Consensus 303 ~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~-------------~~~v~~a~aGDI~~~~~~~ 369 (527)
T TIGR00503 303 ANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGD-------------REHVEEAYAGDIIGLHNHG 369 (527)
T ss_pred eccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCC-------------ceEcceeCCCCEEEEECCC
Confidence 7 6 48999999999999999999997665432 2333333333222 12233 3379999999999
Q ss_pred cccCCCceE
Q 000923 939 HAIAGTGLY 947 (1222)
Q Consensus 939 ~~~aG~~l~ 947 (1222)
...+|++|.
T Consensus 370 ~~~~GDtl~ 378 (527)
T TIGR00503 370 TIQIGDTFT 378 (527)
T ss_pred CcccCCEec
Confidence 999999985
No 47
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.7e-25 Score=246.37 Aligned_cols=227 Identities=22% Similarity=0.333 Sum_probs=174.3
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCc---------------------------------ccccccCceeEeeeeeEeecc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTN---------------------------------VQEGEAGGITQQIGATYFPAE 677 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~---------------------------------v~~~e~~GIT~~iga~~~~~~ 677 (1222)
....++.+|++|.||||||++|+... ++..+..|||+++...+|.+.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 34559999999999999999998321 123345799999988887765
Q ss_pred ccccchhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEee
Q 000923 678 NIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNK 756 (1222)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNK 756 (1222)
. ..+.|.|||||+.|+..|..|++-||++||+||+..|+..||+.|--++..+++. +||++||
T Consensus 85 K----------------RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNK 148 (431)
T COG2895 85 K----------------RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNK 148 (431)
T ss_pred c----------------ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEee
Confidence 4 3499999999999999999999999999999999999999999999999999974 8889999
Q ss_pred eccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHH
Q 000923 757 VDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL 836 (1222)
Q Consensus 757 iDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~ 836 (1222)
|||+ +|++ ..|..............|+. .+.+||+||+.|.||-.--..
T Consensus 149 mDLv-dy~e------------------~~F~~I~~dy~~fa~~L~~~------------~~~~IPiSAl~GDNV~~~s~~ 197 (431)
T COG2895 149 MDLV-DYSE------------------EVFEAIVADYLAFAAQLGLK------------DVRFIPISALLGDNVVSKSEN 197 (431)
T ss_pred eccc-ccCH------------------HHHHHHHHHHHHHHHHcCCC------------cceEEechhccCCcccccccC
Confidence 9998 4532 33444444455555555653 358999999999999877777
Q ss_pred HHHHHHHHHHHhhhc--------cccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCC
Q 000923 837 LVQWTQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTP 906 (1222)
Q Consensus 837 i~~~~~~~l~e~l~~--------~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p 906 (1222)
+-||..++|++.|.. ..+|+++|--+..-.-.-.-..|+|.+|++++||.|++.+++ ..++|..+.++
T Consensus 198 mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG--~~s~V~~Ivt~ 273 (431)
T COG2895 198 MPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSG--KTSRVKRIVTF 273 (431)
T ss_pred CCcccCccHHHHHhhccccccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCC--CeeeEEEEecc
Confidence 777777777776532 345888887664432222346788999999999999998875 34555555544
No 48
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.93 E-value=1.9e-25 Score=283.07 Aligned_cols=281 Identities=24% Similarity=0.293 Sum_probs=191.7
Q ss_pred cccCCCCEEEEEccCCCCchhhhhhhcCCc-c---------------cccccCceeEeeeeeEeeccccccchhhccccc
Q 000923 627 EENLRSPICCIMGHVDTGKTKLLDCIRGTN-V---------------QEGEAGGITQQIGATYFPAENIRERTRELKANA 690 (1222)
Q Consensus 627 ~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~-v---------------~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~ 690 (1222)
..++|+ |+|+||+|||||||+++|+... . .....+|||++.+..++.|...
T Consensus 17 ~~~iRn--i~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~----------- 83 (731)
T PRK07560 17 PEQIRN--IGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYE----------- 83 (731)
T ss_pred hhcccE--EEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEec-----------
Confidence 345777 9999999999999999997421 0 1122356666655554444210
Q ss_pred ccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCch
Q 000923 691 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 770 (1222)
Q Consensus 691 ~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~ 770 (1222)
.....|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|+++...++|+|||+||||+.. ++
T Consensus 84 -~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~-------~~ 155 (731)
T PRK07560 84 -GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI-------KE 155 (731)
T ss_pred -CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc-------cc
Confidence 0124599999999999999999999999999999999999999999999999888999999999999863 22
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhh--hhccccCCCceeEEEcCCCCCCChh-----------------
Q 000923 771 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL--YYKNKDRGETFNIVPTSAISGEGIP----------------- 831 (1222)
Q Consensus 771 i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~--~~~~~~~g~~v~vvpvSA~tGeGI~----------------- 831 (1222)
+. .....++..|...+..+...+..+ ...++ .|... ...-.+++.||+.|.|+.
T Consensus 156 ~~----~~~~~~~~~~~~~~~e~~~~l~~~-~~~~~~~~~~~~--~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~ 228 (731)
T PRK07560 156 LK----LTPQEMQQRLLKIIKDVNKLIKGM-APEEFKEKWKVD--VEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDY 228 (731)
T ss_pred cc----CCHHHHHHHHHHHHHHHHHHHHHh-hhhhhhcceeec--CCCCcEeeeecccccceeHHHHHHhCCCHHHHHHH
Confidence 11 111223333443333333222211 11111 01000 011246788999998886
Q ss_pred -----------------hHHHHHHHHHHHHHHHh----------------------hhccccccceEEEEEEEcCceeEE
Q 000923 832 -----------------DLLLLLVQWTQKTMVEK----------------------LTFRNELQCTVLEVKVIEGHGTTI 872 (1222)
Q Consensus 832 -----------------eLl~~i~~~~~~~l~e~----------------------l~~~~~~~~~VlEv~~~~g~G~v~ 872 (1222)
.||+.|+.++|.|.... .+...++.+.|+.+..+++.|.++
T Consensus 229 ~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va 308 (731)
T PRK07560 229 YEKGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVA 308 (731)
T ss_pred HhcCCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEE
Confidence 78999999998875311 122346889999999999999999
Q ss_pred EEEEEeeeecCCCEEEEccCCC-ceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cCcEEeecCcccccCCCceEE
Q 000923 873 DVVLVNGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QGIKITAQGLEHAIAGTGLYV 948 (1222)
Q Consensus 873 ~~~V~~GtLk~GD~ivv~g~~g-~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g~~i~~~gL~~~~aG~~l~v 948 (1222)
+++|++|+|++||.|.+.+... ..+..|..+.... ..++..+ +|.++++.||+...+|++|..
T Consensus 309 ~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~-------------~~~v~~a~AGdIv~i~gl~~~~~GdtL~~ 373 (731)
T PRK07560 309 TGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPE-------------REEVEEIPAGNIAAVTGLKDARAGETVVS 373 (731)
T ss_pred EEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCC-------------CceeeeECCCCEEEEEcccccccCCEEeC
Confidence 9999999999999998876542 2233333222211 1122333 688888899988888988853
No 49
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.93 E-value=6.9e-25 Score=260.80 Aligned_cols=261 Identities=23% Similarity=0.242 Sum_probs=176.3
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCc---ccccccCceeEeeeeeEeecccccc------c-hh-hccc-ccc-cccCCe
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRE------R-TR-ELKA-NAT-LKVPGL 697 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~---v~~~e~~GIT~~iga~~~~~~~~~~------~-~~-~~~~-~~~-~~~~~i 697 (1222)
...+|+|+||+|||||||+++|.+.. ......+|+|.+++...+.+..... . +. .+.. ... .....|
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 34569999999999999999997542 2234468999998876555421100 0 00 0000 000 002469
Q ss_pred EeecCCCchhhHHHHHhhcccCceeEEEecccCCC-ChhHHHHHHHHHhcCC-ceEEEEeeeccccCcccCCCchHHHHH
Q 000923 698 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 698 ~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv-~~qT~e~l~~lk~~~v-P~IVviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
+|||||||..|...+.+++..+|++|||||+.+++ .++|.+++..+...++ |+|||+||+|++.. +.
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~-------~~---- 156 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK-------ER---- 156 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc-------hh----
Confidence 99999999999999999999999999999999998 8999999999988886 58999999999731 00
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccccc
Q 000923 776 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNEL 855 (1222)
Q Consensus 776 ~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~ 855 (1222)
+...+..+...+... +...+++|++||++|.||+.|++.|..+++.+. .....++
T Consensus 157 ----------~~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~---~~~~~~~ 211 (411)
T PRK04000 157 ----------ALENYEQIKEFVKGT------------VAENAPIIPVSALHKVNIDALIEAIEEEIPTPE---RDLDKPP 211 (411)
T ss_pred ----------HHHHHHHHHHHhccc------------cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCC---CCCCCCc
Confidence 000111122222111 013469999999999999999999987664331 1235678
Q ss_pred cceEEEEEEEcC--------ceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc
Q 000923 856 QCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 927 (1222)
Q Consensus 856 ~~~VlEv~~~~g--------~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa 927 (1222)
++.|.++|.+.| +|+++.|+|.+|+|++||.|.+++...........+ .|. ..+|++++.++..+..|
T Consensus 212 r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~---~~~-~~~VksI~~~~~~~~~a 287 (411)
T PRK04000 212 RMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKW---EPI-TTKIVSLRAGGEKVEEA 287 (411)
T ss_pred eEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceeccccccc---ccc-eEEEeEEEECCEECCEE
Confidence 999999998765 467999999999999999999886531000000000 011 24567777777666654
Q ss_pred -cCcE
Q 000923 928 -QGIK 931 (1222)
Q Consensus 928 -~g~~ 931 (1222)
+|..
T Consensus 288 ~~G~~ 292 (411)
T PRK04000 288 RPGGL 292 (411)
T ss_pred cCCCE
Confidence 4444
No 50
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.2e-24 Score=253.82 Aligned_cols=218 Identities=26% Similarity=0.455 Sum_probs=170.5
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCC-------------------------------cccccccCceeEeeeeeEeecccc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGT-------------------------------NVQEGEAGGITQQIGATYFPAENI 679 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~-------------------------------~v~~~e~~GIT~~iga~~~~~~~~ 679 (1222)
-...++|+||+|+|||||+++|+.. +..+.+.+|+|.+++.++|....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~- 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS- 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc-
Confidence 3456899999999999999999721 11234567888888877776432
Q ss_pred ccchhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCC-------CChhHHHHHHHHHhcCC-ceE
Q 000923 680 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFI 751 (1222)
Q Consensus 680 ~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dG-------v~~qT~e~l~~lk~~~v-P~I 751 (1222)
..++|||+|||.+|...++.|+..+|++|||||++.| ...||++|..+++.+|+ .+|
T Consensus 255 ---------------~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli 319 (603)
T KOG0458|consen 255 ---------------KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI 319 (603)
T ss_pred ---------------eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE
Confidence 3499999999999999999999999999999999865 46899999999999997 589
Q ss_pred EEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHcCCchhhhhccccCCCceeEEEcCCCCCCCh
Q 000923 752 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 830 (1222)
Q Consensus 752 VviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L-~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI 830 (1222)
|+|||||++ +|++ ++|.+....+...| ...||. ...+.|||||+++|+|+
T Consensus 320 vaiNKmD~V-~Wsq------------------~RF~eIk~~l~~fL~~~~gf~----------es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 320 VAINKMDLV-SWSQ------------------DRFEEIKNKLSSFLKESCGFK----------ESSVKFIPISGLSGENL 370 (603)
T ss_pred EEeeccccc-CccH------------------HHHHHHHHHHHHHHHHhcCcc----------cCCcceEecccccCCcc
Confidence 999999998 6864 34454455555666 555664 24679999999999998
Q ss_pred hhH--HHHHHHHH-HHHHHHhhh--------ccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCC
Q 000923 831 PDL--LLLLVQWT-QKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 893 (1222)
Q Consensus 831 ~eL--l~~i~~~~-~~~l~e~l~--------~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~ 893 (1222)
-.. ...+..|+ .+.|+..++ +..||++.|.+++..++.|.++.|+|.+|.|++|+.|+++++.
T Consensus 371 ~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~ 444 (603)
T KOG0458|consen 371 IKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR 444 (603)
T ss_pred cccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCc
Confidence 654 12344444 344444442 2457999999999999999999999999999999999987643
No 51
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.92 E-value=3.5e-25 Score=236.53 Aligned_cols=165 Identities=39% Similarity=0.559 Sum_probs=126.2
Q ss_pred CEEEEEccCCCCchhhhhhhcCCccc------------------ccccCceeEeeeeeEeeccccccchhhccccccccc
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQ------------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKV 694 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~------------------~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~ 694 (1222)
.+|+|+||+|||||||+++|+..... ....+|+|.+++...+.. .+..
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~--------------~~~~ 69 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK--------------NENN 69 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB--------------TESS
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc--------------cccc
Confidence 35999999999999999999843311 123467777776666550 1223
Q ss_pred CCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHH
Q 000923 695 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA 774 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~ 774 (1222)
..|+|||||||.+|...+.+++..+|++|||||+.+|+++||.++|.++..+++|+|||+||||++.
T Consensus 70 ~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~------------- 136 (188)
T PF00009_consen 70 RKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE------------- 136 (188)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH-------------
T ss_pred cceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh-------------
Confidence 4599999999999999999999999999999999999999999999999999999999999999961
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH-HHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 775 IKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 775 l~~q~~~~~~~~~~~l~~i~~~L-~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.++...+..+...| ...++.. ...+|+||+||++|.|+..|++.|..++|
T Consensus 137 ---------~~~~~~~~~~~~~l~~~~~~~~---------~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 137 ---------KELEEIIEEIKEKLLKEYGENG---------EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTSTT---------TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ---------hhHHHHHHHHHHHhccccccCc---------cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 11222233333222 3333321 03689999999999999999999998876
No 52
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.92 E-value=2.2e-24 Score=270.06 Aligned_cols=213 Identities=23% Similarity=0.329 Sum_probs=145.6
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc--cc-------------c------------------cccCceeEeeeeeEeecccc
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN--VQ-------------E------------------GEAGGITQQIGATYFPAENI 679 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~--v~-------------~------------------~e~~GIT~~iga~~~~~~~~ 679 (1222)
..|+|+||+|||||||+++|+... +. . ...+|+|++++..++.
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~---- 100 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA---- 100 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc----
Confidence 459999999999999999998532 11 0 1123444444433333
Q ss_pred ccchhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCC-ceEEEEeeec
Q 000923 680 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVD 758 (1222)
Q Consensus 680 ~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~v-P~IVviNKiD 758 (1222)
+....++|||||||..|...+..++..+|++|||||+..|+++||.+++.++...++ |+|||+||||
T Consensus 101 ------------~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 101 ------------TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred ------------cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecc
Confidence 334569999999999999989999999999999999999999999999999998885 6888999999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 759 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 759 l~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
++. |.. ..+......+...+...++ ..+++||+||++|.||.++...+.
T Consensus 169 ~~~-~~~------------------~~~~~i~~~i~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~ 217 (632)
T PRK05506 169 LVD-YDQ------------------EVFDEIVADYRAFAAKLGL------------HDVTFIPISALKGDNVVTRSARMP 217 (632)
T ss_pred ccc-chh------------------HHHHHHHHHHHHHHHHcCC------------CCccEEEEecccCCCccccccCCC
Confidence 972 211 0111112223333334443 236899999999999985432222
Q ss_pred HHHHHHHHHhh--------hccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccC
Q 000923 839 QWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGL 892 (1222)
Q Consensus 839 ~~~~~~l~e~l--------~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~ 892 (1222)
||..+.|.+.+ ....|+++.|..++.....+..+.|+|.+|+|++||.|++++.
T Consensus 218 wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~ 279 (632)
T PRK05506 218 WYEGPSLLEHLETVEIASDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPS 279 (632)
T ss_pred cccHhHHHHHHhcCCCCCCcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCC
Confidence 21112222211 1245788888887654322233679999999999999998764
No 53
>PRK12740 elongation factor G; Reviewed
Probab=99.92 E-value=4.3e-24 Score=269.80 Aligned_cols=277 Identities=23% Similarity=0.249 Sum_probs=189.9
Q ss_pred EccCCCCchhhhhhhcCCcc--------c----------ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEe
Q 000923 638 MGHVDTGKTKLLDCIRGTNV--------Q----------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 699 (1222)
Q Consensus 638 vG~vdsGKTTLl~~L~~~~v--------~----------~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 699 (1222)
+||+|||||||+++|+...- . ....+|||+......+.|. ...|+|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~----------------~~~i~l 64 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK----------------GHKINL 64 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC----------------CEEEEE
Confidence 69999999999999953211 0 1123556665555555443 345999
Q ss_pred ecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 700 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 700 IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
||||||.+|...+.+++..+|++|+|||+..++..++..+|..+...++|+|||+||+|+... ....+...+....
T Consensus 65 iDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~----~~~~~~~~l~~~l 140 (668)
T PRK12740 65 IDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA----DFFRVLAQLQEKL 140 (668)
T ss_pred EECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC----CHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998631 1111222222210
Q ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHHHcCCchh----
Q 000923 780 --------------------------------------------------TDVQNEFNMRLVQIVTQLKEQGMNTE---- 805 (1222)
Q Consensus 780 --------------------------------------------------~~~~~~~~~~l~~i~~~L~e~gl~~e---- 805 (1222)
...+..+-+.+......|.+.++...
T Consensus 141 ~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~ 220 (668)
T PRK12740 141 GAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSE 220 (668)
T ss_pred CCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCH
Confidence 01111111112222222333322211
Q ss_pred -hhhc----cccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHH--------------hhhccccccceEEEEEEEc
Q 000923 806 -LYYK----NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE--------------KLTFRNELQCTVLEVKVIE 866 (1222)
Q Consensus 806 -~~~~----~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e--------------~l~~~~~~~~~VlEv~~~~ 866 (1222)
.++. ....+..+|++++||++|.|+..||+.|+.+++.+... ..++..++.+.|+++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~ 300 (668)
T PRK12740 221 EEIKAGLRKATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDP 300 (668)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecC
Confidence 1110 01225678999999999999999999999999877531 1133556889999999999
Q ss_pred CceeEEEEEEEeeeecCCCEEEEccCCC-ceeeeeeeccCCCCCcceeeeeeeeehhhhc-cccCcEEeecCcccccCCC
Q 000923 867 GHGTTIDVVLVNGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGT 944 (1222)
Q Consensus 867 g~G~v~~~~V~~GtLk~GD~ivv~g~~g-~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~g~~i~~~gL~~~~aG~ 944 (1222)
+.|.++.++|++|+|+.||.|.+.+... ..++.|..+.... ..++. +.+|.++++.|++....|+
T Consensus 301 ~~G~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~-------------~~~v~~~~aGdI~~i~gl~~~~~Gd 367 (668)
T PRK12740 301 FVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQ-------------REEVDEAVAGDIVAVAKLKDAATGD 367 (668)
T ss_pred CCCcEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCC-------------ccccCccCCCCEEEEeccCccCCCC
Confidence 9999999999999999999998876532 2334444443211 12223 3368888888998888898
Q ss_pred ceE
Q 000923 945 GLY 947 (1222)
Q Consensus 945 ~l~ 947 (1222)
+|.
T Consensus 368 tl~ 370 (668)
T PRK12740 368 TLC 370 (668)
T ss_pred EEe
Confidence 885
No 54
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.7e-23 Score=226.86 Aligned_cols=246 Identities=25% Similarity=0.338 Sum_probs=179.4
Q ss_pred CCEEEEEccCCCCchhhhhhhcCC-------cccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCC
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGT-------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 704 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~-------~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPG 704 (1222)
+.+++|+||+|+|||||..+|... .......+|||.++|...+....-.. ++... .-+++||||||
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~par----Lpq~e---~lq~tlvDCPG 79 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPAR----LPQGE---QLQFTLVDCPG 79 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccc----cCccc---cceeEEEeCCC
Confidence 467999999999999999999632 12345568999999977665432211 11111 13589999999
Q ss_pred chhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 705 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 705 he~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
|.........|+...|++|||||+..|.++||.|+|-+...+-..+|||+||+|..+. +..+.
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE---~qr~s-------------- 142 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPE---NQRAS-------------- 142 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccc---hhhhh--------------
Confidence 9999999999999999999999999999999999998888777789999999998742 11110
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCC----CChhhHHHHHHHHHHHHHHHhhhccccccceEE
Q 000923 785 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG----EGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVL 860 (1222)
Q Consensus 785 ~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tG----eGI~eLl~~i~~~~~~~l~e~l~~~~~~~~~Vl 860 (1222)
.+...-..+...|...+ +++..||+++||..| ++|++|.+.|...+-. ...+..+||.+.|.
T Consensus 143 ki~k~~kk~~KtLe~t~-----------f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~---P~Rd~~gpflm~vD 208 (522)
T KOG0461|consen 143 KIEKSAKKVRKTLESTG-----------FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE---PKRDEEGPFLMAVD 208 (522)
T ss_pred HHHHHHHHHHHHHHhcC-----------cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC---CCcCCCCCeEEEee
Confidence 11111123333444333 467899999999999 7777776666543322 23456788999999
Q ss_pred EEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cCcE
Q 000923 861 EVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QGIK 931 (1222)
Q Consensus 861 Ev~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g~~ 931 (1222)
..+.++|.|+|.+|.|.+|.|+.|+.|.+...+ ..-+|+++++.+..|..+ +|..
T Consensus 209 HCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~----------------e~rkVKslqmf~~~vtsa~~GdR 264 (522)
T KOG0461|consen 209 HCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALN----------------EKRKVKSLQMFKQRVTSAAAGDR 264 (522)
T ss_pred eeEEeccCceEEeeeEEEeEEecCcEEeecccc----------------hhhhhhhHHHHhhhhhhhhcccc
Confidence 999999999999999999999999998874221 122467777777776654 5543
No 55
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.4e-23 Score=232.73 Aligned_cols=283 Identities=19% Similarity=0.285 Sum_probs=188.0
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc----------------------ccccccCceeEeeeeeEeeccccccchhhccccc
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN----------------------VQEGEAGGITQQIGATYFPAENIRERTRELKANA 690 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~----------------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~ 690 (1222)
.+++||-|||+|||||...|+--. ......+||++...+..|+|..
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~------------ 80 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD------------ 80 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC------------
Confidence 349999999999999999886211 1122345666666666665543
Q ss_pred ccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeecccc---------
Q 000923 691 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLY--------- 761 (1222)
Q Consensus 691 ~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~--------- 761 (1222)
..|+|+|||||++|+.-+.|.+..+|.||+|||+..|+.+||+..+..|+.+++|+|-+|||+|+..
T Consensus 81 ----~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdE 156 (528)
T COG4108 81 ----CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDE 156 (528)
T ss_pred ----eEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHH
Confidence 4599999999999999999999999999999999999999999999999999999999999999753
Q ss_pred ------------CcccCCCchHHHHHHH-------------------------hhHHHHHHHHHH----HHHHHHHHHHc
Q 000923 762 ------------GWKTCRNAPIVKAIKQ-------------------------QNTDVQNEFNMR----LVQIVTQLKEQ 800 (1222)
Q Consensus 762 ------------~w~~~~~a~i~~~l~~-------------------------q~~~~~~~~~~~----l~~i~~~L~e~ 800 (1222)
.|.-+...+|.-.+.. ....+...+... +.+-+.++..-
T Consensus 157 iE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a 236 (528)
T COG4108 157 IEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGA 236 (528)
T ss_pred HHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhh
Confidence 2322211111110000 000010111111 11111112111
Q ss_pred --CCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhh-----c-cccccceEEEEEEE---cCce
Q 000923 801 --GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT-----F-RNELQCTVLEVKVI---EGHG 869 (1222)
Q Consensus 801 --gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~-----~-~~~~~~~VlEv~~~---~g~G 869 (1222)
-|+.+.|. .|...|||+.||+++-||..+|+.++.|+++|...... + .+.|.|.|+.+... .++-
T Consensus 237 ~~~Fd~~~fl----~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRD 312 (528)
T COG4108 237 GNEFDLEAFL----AGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRD 312 (528)
T ss_pred ccccCHHHHh----cCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCccccc
Confidence 12223332 26778999999999999999999999999888655332 1 33488999987643 4678
Q ss_pred eEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeee--ehhhhccc-cCcEEeecCcccccCCCce
Q 000923 870 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYL--HHKQIKAA-QGIKITAQGLEHAIAGTGL 946 (1222)
Q Consensus 870 ~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~--~~~ev~aa-~g~~i~~~gL~~~~aG~~l 946 (1222)
+++..+|.+|.+..|+.+...-++.. + .|-.+. .++ ....+..| +|.+|-+.+-....+|++|
T Consensus 313 RIAFmRv~SGkferGMkv~h~rtGK~-~----~ls~~~---------~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~ 378 (528)
T COG4108 313 RIAFMRVCSGKFERGMKVTHVRTGKD-V----KLSDAL---------TFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTF 378 (528)
T ss_pred ceeEEEeccccccCCceeeeeecCCc-e----EecchH---------hhhhhhhhhhhhccCCCeEeccCCCceeeccee
Confidence 89999999999999998866443311 1 110110 011 11234444 7888877666667888888
Q ss_pred EEe
Q 000923 947 YVV 949 (1222)
Q Consensus 947 ~v~ 949 (1222)
..-
T Consensus 379 t~G 381 (528)
T COG4108 379 TEG 381 (528)
T ss_pred ecC
Confidence 643
No 56
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.90 E-value=1.8e-23 Score=264.62 Aligned_cols=276 Identities=21% Similarity=0.257 Sum_probs=177.8
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCc----------------ccccccCceeEeeeeeEeeccccccchhhccccccc
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATL 692 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~----------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~ 692 (1222)
.+|+ |+|+||+|||||||+++|+... ......+|+|++....++.+ ...+
T Consensus 18 ~irn--I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~------------~~~~ 83 (720)
T TIGR00490 18 FIRN--IGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVH------------EYEG 83 (720)
T ss_pred cccE--EEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEE------------eecC
Confidence 4566 9999999999999999997421 01112245554443332111 0123
Q ss_pred ccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHH
Q 000923 693 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 772 (1222)
Q Consensus 693 ~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~ 772 (1222)
....|+|||||||.+|...+.++++.+|++|||||+..|+..+|..+|+.+...++|+|||+||||+...+ +.
T Consensus 84 ~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~-------~~ 156 (720)
T TIGR00490 84 NEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINE-------LK 156 (720)
T ss_pred CceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccch-------hc
Confidence 34569999999999999999999999999999999999999999999999988999999999999997421 11
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhh---h-ccccCCCceeEEEcCCCCCC--------------------
Q 000923 773 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY---Y-KNKDRGETFNIVPTSAISGE-------------------- 828 (1222)
Q Consensus 773 ~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~---~-~~~~~g~~v~vvpvSA~tGe-------------------- 828 (1222)
. ....++..|...+..+...+... + ++.+ | .... ...+++.|++.++
T Consensus 157 ~----~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~~~~~~~~~---~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (720)
T TIGR00490 157 L----TPQELQERFIKIITEVNKLIKAM-A-PEEFRDKWKVRVE---DGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKY 227 (720)
T ss_pred C----CHHHHHHHHhhhhHHHHhhhhcc-C-CHHHhhceEechh---hCCHHHHhhhhcccccchhHhhcCCCHHHHHHH
Confidence 1 12223334443333333333211 0 0000 0 0000 0011111222211
Q ss_pred -------C-------hhhHHHHHHHHHHHHHHHh----------------------hhccccccceEEEEEEEcCceeEE
Q 000923 829 -------G-------IPDLLLLLVQWTQKTMVEK----------------------LTFRNELQCTVLEVKVIEGHGTTI 872 (1222)
Q Consensus 829 -------G-------I~eLl~~i~~~~~~~l~e~----------------------l~~~~~~~~~VlEv~~~~g~G~v~ 872 (1222)
+ +..||+.|+.++|.|.... .+...++.+.|+++...++.|+++
T Consensus 228 ~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia 307 (720)
T TIGR00490 228 CKEDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVA 307 (720)
T ss_pred HHhccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEE
Confidence 1 4567888888887775210 012346889999999999999999
Q ss_pred EEEEEeeeecCCCEEEEccCC-CceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cCcEEeecCcccccCCCceE
Q 000923 873 DVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QGIKITAQGLEHAIAGTGLY 947 (1222)
Q Consensus 873 ~~~V~~GtLk~GD~ivv~g~~-g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g~~i~~~gL~~~~aG~~l~ 947 (1222)
+++|++|+|++||.|++.+.+ ...+.+|..+..+. ..++..+ +|.++++.|++...+|++|.
T Consensus 308 ~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~-------------~~~v~~a~aGdIv~i~gl~~~~~GdtL~ 371 (720)
T TIGR00490 308 VGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPE-------------RVEVDEIPAGNIVAVIGLKDAVAGETIC 371 (720)
T ss_pred EEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCC-------------ccCccEECCCCEEEEECccccccCceee
Confidence 999999999999999887755 22333333332221 1223333 68888899998888888874
No 57
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.90 E-value=5e-23 Score=263.98 Aligned_cols=132 Identities=26% Similarity=0.343 Sum_probs=101.2
Q ss_pred cccCCCCEEEEEccCCCCchhhhhhhcCCc----------------ccccccCceeEeeeeeEeeccccccchhhccccc
Q 000923 627 EENLRSPICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANA 690 (1222)
Q Consensus 627 ~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~----------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~ 690 (1222)
+.++|+ |+|+||+|||||||+++|+... ......+|||+..+...+.|..............
T Consensus 16 ~~~Irn--i~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 16 KHNIRN--MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred ccCccE--EEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 456777 9999999999999999997422 1223356777777666666542110000000000
Q ss_pred ccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 691 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 691 ~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
......|+|||||||.+|...+.++++.+|++|||||+..|++.||..+|+++...++|+|||+||||++
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 1112458999999999999999999999999999999999999999999999999999999999999997
No 58
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=7.1e-23 Score=222.96 Aligned_cols=223 Identities=26% Similarity=0.308 Sum_probs=166.7
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCc---ccccccCceeEeeeeeEeeccccc-----------cchhhcccccccccCCe
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIR-----------ERTRELKANATLKVPGL 697 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~---v~~~e~~GIT~~iga~~~~~~~~~-----------~~~~~~~~~~~~~~~~i 697 (1222)
..+|+++||++||||||+.+|.+.. +.+.-.+|||+.+|+......... ..|..+.... --...+
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~-~l~R~V 88 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAET-ELVRRV 88 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCc-cEEEEE
Confidence 3469999999999999999998743 445557899999986443321110 0000000000 012459
Q ss_pred EeecCCCchhhHHHHHhhcccCceeEEEecccCC-CChhHHHHHHHHHhcCC-ceEEEEeeeccccCcccCCCchHHHHH
Q 000923 698 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 698 ~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dG-v~~qT~e~l~~lk~~~v-P~IVviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
.|+|+|||+-....|.+|+...|++||||+|+.. .+|||.|||..|.-.++ .+|||-||||++.
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~-------------- 154 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS-------------- 154 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec--------------
Confidence 9999999999999999999999999999999975 68999999999998886 5889999999983
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccccc
Q 000923 776 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNEL 855 (1222)
Q Consensus 776 ~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~ 855 (1222)
+++..+...+|..++. | .+....|+||+||..+.||+.|++.|..+++.+.. +...++
T Consensus 155 -------~E~AlE~y~qIk~Fvk--G----------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r---d~~~~p 212 (415)
T COG5257 155 -------RERALENYEQIKEFVK--G----------TVAENAPIIPISAQHKANIDALIEAIEKYIPTPER---DLDKPP 212 (415)
T ss_pred -------HHHHHHHHHHHHHHhc--c----------cccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc---CCCCCc
Confidence 1122223334443332 1 12356799999999999999999999998877643 456678
Q ss_pred cceEEEEEEEcC--------ceeEEEEEEEeeeecCCCEEEEcc
Q 000923 856 QCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCG 891 (1222)
Q Consensus 856 ~~~VlEv~~~~g--------~G~v~~~~V~~GtLk~GD~ivv~g 891 (1222)
++.|..+|.+.- .|-|+.|.+.+|.|+.||.|-+-+
T Consensus 213 ~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrP 256 (415)
T COG5257 213 RMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRP 256 (415)
T ss_pred eEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecC
Confidence 889999887742 577888999999999999997754
No 59
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.89 E-value=7.8e-23 Score=219.60 Aligned_cols=154 Identities=29% Similarity=0.334 Sum_probs=119.2
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcc----------------cccccCceeEeeeeeEeeccccccchhhcccccccccCC
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 696 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v----------------~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1222)
.+|+|+||+|||||||+++|++... .....+|+|.+.....+.+. ...
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~~ 66 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA----------------NRH 66 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC----------------CeE
Confidence 4599999999999999999975311 12235777777766555443 245
Q ss_pred eEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEeeeccccCcccCCCchHHHHH
Q 000923 697 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 697 i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
++|||||||..|...+.+++..+|++|||||+..|+++||.++|.++...++| +|||+||||++. ...
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~------~~~----- 135 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD------DEE----- 135 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC------cHH-----
Confidence 99999999999999999999999999999999999999999999999999998 789999999962 111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhh
Q 000923 776 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 832 (1222)
Q Consensus 776 ~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~e 832 (1222)
.+.....++...|...|++. ..+||||+||++|.|+..
T Consensus 136 ---------~~~~~~~~i~~~l~~~g~~~----------~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 136 ---------LLELVEMEVRELLSKYGFDG----------DNTPIVRGSALKALEGDD 173 (195)
T ss_pred ---------HHHHHHHHHHHHHHHhcccc----------cCCeEEEeeCccccCCCC
Confidence 11112234555666666642 358999999999999743
No 60
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.4e-23 Score=232.49 Aligned_cols=290 Identities=22% Similarity=0.268 Sum_probs=199.2
Q ss_pred cccccCCCCEEEEEccCCCCchhhhhhhcC--------Ccc----------cccccCceeEeeeeeEeeccccccchhhc
Q 000923 625 QAEENLRSPICCIMGHVDTGKTKLLDCIRG--------TNV----------QEGEAGGITQQIGATYFPAENIRERTREL 686 (1222)
Q Consensus 625 ~~~~~~R~~~V~IvG~vdsGKTTLl~~L~~--------~~v----------~~~e~~GIT~~iga~~~~~~~~~~~~~~~ 686 (1222)
.....+|+ |+||.|+++||||...+|+. +.+ ...+.+|||++..+..+.|.+
T Consensus 32 p~~akirn--igiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg-------- 101 (753)
T KOG0464|consen 32 PAIAKIRN--IGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG-------- 101 (753)
T ss_pred Cchhhhhc--ceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc--------
Confidence 34456787 99999999999999998873 112 234568999999888887765
Q ss_pred ccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccC----
Q 000923 687 KANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG---- 762 (1222)
Q Consensus 687 ~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~---- 762 (1222)
+.|++||||||.+|+-.+.|.+++.|++|.|+|++.|+++||...|+++..+++|.++++||||....
T Consensus 102 --------~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~ 173 (753)
T KOG0464|consen 102 --------HRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFEN 173 (753)
T ss_pred --------ceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhh
Confidence 44999999999999999999999999999999999999999999999999999999999999995420
Q ss_pred ----------------------------------------c----------ccCC-----CchHHHHHHHhhHHHHHHHH
Q 000923 763 ----------------------------------------W----------KTCR-----NAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 763 ----------------------------------------w----------~~~~-----~a~i~~~l~~q~~~~~~~~~ 787 (1222)
| ...+ ...+.+.+.. .++.+-
T Consensus 174 avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae----~knal~ 249 (753)
T KOG0464|consen 174 AVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAE----AKNALC 249 (753)
T ss_pred HHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHH----HHHHHH
Confidence 1 1000 0011111111 111111
Q ss_pred HHHHHHHHHHHHcCCchhhhhccc----------------cCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhh--
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNK----------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL-- 849 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~----------------~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l-- 849 (1222)
..+..+...+...- .+.|..+- -....+|+.+.||+++.||..||+.+.-|++++-....
T Consensus 250 ~qlad~~~dfad~~--ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyef 327 (753)
T KOG0464|consen 250 EQLADLDADFADKF--LDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEF 327 (753)
T ss_pred HHHhhccHHHHHHH--HHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHH
Confidence 11111111111100 01111110 01356799999999999999999999999887754432
Q ss_pred -h-ccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc
Q 000923 850 -T-FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 927 (1222)
Q Consensus 850 -~-~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa 927 (1222)
. |.+.+++..+.+-+++.+|+.++-+||+|+|+.+-.|.... |-....+-.|+.|-.- .+.+++..
T Consensus 328 lqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin--~~~se~~~kl~~pfad----------e~~~i~ql 395 (753)
T KOG0464|consen 328 LQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNIN--GMCSEGILKLFLPFAD----------EHREIEQL 395 (753)
T ss_pred HhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeeecc--cccccchHhhhccchh----------hhhhhhhc
Confidence 2 25667888888889999999999999999999998776432 3333344445444311 12333332
Q ss_pred -cCcEEeecCcccccCCCceEEeC
Q 000923 928 -QGIKITAQGLEHAIAGTGLYVVG 950 (1222)
Q Consensus 928 -~g~~i~~~gL~~~~aG~~l~v~~ 950 (1222)
+|.+....||....+|++++...
T Consensus 396 sagnialt~glk~tatgdtivask 419 (753)
T KOG0464|consen 396 SAGNIALTAGLKHTATGDTIVASK 419 (753)
T ss_pred ccccEEEEecceeeccCCeEEecc
Confidence 56666667999999999987543
No 61
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.88 E-value=1.5e-22 Score=227.80 Aligned_cols=194 Identities=26% Similarity=0.298 Sum_probs=151.0
Q ss_pred EEEEEccCCCCchhhhhhhcCCcc------------------cccccCceeEeeeeeEeeccccccchhhcccccccccC
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNV------------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 695 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v------------------~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1222)
+|+|+||+|||||||+++|+...- .....+|||++....++.|.. .
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~----------------~ 64 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD----------------H 64 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC----------------E
Confidence 389999999999999999973210 122345666666666665543 4
Q ss_pred CeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccC-------------
Q 000923 696 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG------------- 762 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~------------- 762 (1222)
.++|||||||.+|...+.++++.+|++|||||+..|++++|..+|..+...++|+|||+||+|+...
T Consensus 65 ~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l 144 (270)
T cd01886 65 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKL 144 (270)
T ss_pred EEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999999999999999999999997531
Q ss_pred ------------------------------cccC-----CCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhh
Q 000923 763 ------------------------------WKTC-----RNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY 807 (1222)
Q Consensus 763 ------------------------------w~~~-----~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~ 807 (1222)
|... ...+++..+......++..+-+.+.+..+.|++.+|..+.+
T Consensus 145 ~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~ 224 (270)
T cd01886 145 GANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEI 224 (270)
T ss_pred CCCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCC
Confidence 1010 11234455666666777777777778888888887765433
Q ss_pred hcc---------ccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 808 YKN---------KDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 808 ~~~---------~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
... ...+..+||+++||.++.||..||+.|..++|.
T Consensus 225 ~~~el~~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~ 269 (270)
T cd01886 225 TEEEIKAAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPS 269 (270)
T ss_pred CHHHHHHHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCC
Confidence 221 123788999999999999999999999988764
No 62
>PTZ00416 elongation factor 2; Provisional
Probab=99.88 E-value=7.7e-22 Score=252.60 Aligned_cols=126 Identities=26% Similarity=0.327 Sum_probs=99.7
Q ss_pred cccCCCCEEEEEccCCCCchhhhhhhcCCc----------------ccccccCceeEeeeeeEeeccccccchhhccccc
Q 000923 627 EENLRSPICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANA 690 (1222)
Q Consensus 627 ~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~----------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~ 690 (1222)
...+|+ |+|+||+|||||||+++|+... ......+|||++.+...+.|...... ..
T Consensus 16 ~~~irn--i~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~------~~ 87 (836)
T PTZ00416 16 PDQIRN--MSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLED------GD 87 (836)
T ss_pred ccCcCE--EEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeeccccc------cc
Confidence 345676 9999999999999999998421 12233567777776666655421000 00
Q ss_pred ccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 691 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 691 ~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
....+.|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|+++...++|+|||+||||+.
T Consensus 88 ~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 88 DKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred CCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 0112459999999999999999999999999999999999999999999999999999999999999997
No 63
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.87 E-value=9e-23 Score=224.25 Aligned_cols=286 Identities=19% Similarity=0.305 Sum_probs=191.5
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccc--------------cCceeEeeeeeEeeccccc--cchhhcc-cccccc--
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIR--ERTRELK-ANATLK-- 693 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e--------------~~GIT~~iga~~~~~~~~~--~~~~~~~-~~~~~~-- 693 (1222)
..|+++|++++||||||..|+......++ ..|.|..+|...+-++..- -+-.+-. .+.+|.
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 45999999999999999999865544432 2344554444333322111 0000100 122232
Q ss_pred ----cCCeEeecCCCchhhHHHHHhhcc--cCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCC
Q 000923 694 ----VPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 767 (1222)
Q Consensus 694 ----~~~i~~IDTPGhe~F~~~~~rg~~--~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~ 767 (1222)
..-|+|||..||+.|...+..|+. ..|+.+|+|.++.|+-..|.+||.++..+.+|++||++|||+++
T Consensus 214 ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCP------ 287 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCP------ 287 (641)
T ss_pred ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCc------
Confidence 123999999999999988877764 58999999999999999999999999999999999999999983
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhh-cc--------ccC--CCceeEEEcCCCCCCChhhHHHH
Q 000923 768 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYY-KN--------KDR--GETFNIVPTSAISGEGIPDLLLL 836 (1222)
Q Consensus 768 ~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~-~~--------~~~--g~~v~vvpvSA~tGeGI~eLl~~ 836 (1222)
+++.. +.+.-+...|...|+..-... ++ .+| ...+|||.+|.+||.|++-|..+
T Consensus 288 -ANiLq--------------EtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 288 -ANILQ--------------ETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred -HHHHH--------------HHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 44432 223333344444444321110 00 111 35689999999999999665554
Q ss_pred HHHHHHHHHHHhhhccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCC-CceeeeeeeccCCCCCcceeee
Q 000923 837 LVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVK 915 (1222)
Q Consensus 837 i~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~-g~~~~~Ir~ll~p~p~~~~rvk 915 (1222)
| ++++ +...+..++|+.+.|.++|.++|+|+++.+.+.+|+++.+|.+++++.. |..+ |-|.+. +.
T Consensus 353 L-Nlls--~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~--------pI~iKS--IH 419 (641)
T KOG0463|consen 353 L-NLLS--LRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFM--------PIPIKS--IH 419 (641)
T ss_pred H-hhcC--cccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCee--------eeehhh--hh
Confidence 4 4443 2334567888999999999999999999999999999999998886543 2111 111111 11
Q ss_pred eeeeehhhhccccCcEEeecCcccccCCCceEEeCCC
Q 000923 916 GTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 952 (1222)
Q Consensus 916 ~~~~~~~ev~aa~g~~i~~~gL~~~~aG~~l~v~~~e 952 (1222)
...+++..|..++...+++..+.......+++.+.+.
T Consensus 420 RKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 420 RKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred hccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 2234445556666667777777776667777777653
No 64
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.87 E-value=3.9e-22 Score=220.60 Aligned_cols=187 Identities=28% Similarity=0.314 Sum_probs=138.1
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccc------------------cccCceeEeeeeeEeeccccccchhhcccccccccC
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQE------------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVP 695 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~------------------~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1222)
+|+|+||+|+|||||+++|+...-.. ...+|+|.+.....+.| ...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~----------------~~~ 64 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW----------------EDT 64 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE----------------CCE
Confidence 38999999999999999997532111 12234444433333333 345
Q ss_pred CeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHH
Q 000923 696 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
.|+|||||||.+|...+.++++.+|++|||||+.+|+..+|..+|..+...++|+|||+||+|+.. +++...+
T Consensus 65 ~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~-------a~~~~~~ 137 (237)
T cd04168 65 KVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG-------ADLEKVY 137 (237)
T ss_pred EEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC-------CCHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999973 2333332
Q ss_pred HHhh----------------------HHHHHHHHHHHHHHHHHHHHcCCchhhhhcc---------ccCCCceeEEEcCC
Q 000923 776 KQQN----------------------TDVQNEFNMRLVQIVTQLKEQGMNTELYYKN---------KDRGETFNIVPTSA 824 (1222)
Q Consensus 776 ~~q~----------------------~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~---------~~~g~~v~vvpvSA 824 (1222)
..-. ..++..+-+.+.+..+.|++.+|..+..... ...+..+||+++||
T Consensus 138 ~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa 217 (237)
T cd04168 138 QEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSA 217 (237)
T ss_pred HHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccc
Confidence 2211 1112444455566667777777665433211 12378899999999
Q ss_pred CCCCChhhHHHHHHHHHHH
Q 000923 825 ISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 825 ~tGeGI~eLl~~i~~~~~~ 843 (1222)
.++.|+..||+.|..++|.
T Consensus 218 ~~~~Gv~~ll~~~~~~~p~ 236 (237)
T cd04168 218 LKGIGIEELLEGITKLFPT 236 (237)
T ss_pred cCCcCHHHHHHHHHHhcCC
Confidence 9999999999999988864
No 65
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.6e-21 Score=216.16 Aligned_cols=264 Identities=25% Similarity=0.418 Sum_probs=188.7
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCc--c-----------------------------cccccCceeEeeeeeEeeccc
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPAEN 678 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~--v-----------------------------~~~e~~GIT~~iga~~~~~~~ 678 (1222)
-+..+++|+||+++||||+-+.|+... + .+.+..|-|...|..+|...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte- 155 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE- 155 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec-
Confidence 344569999999999999988876311 0 11112334444444444333
Q ss_pred cccchhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCC-----C--ChhHHHHHHHHHhcCC-ce
Q 000923 679 IRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----L--EPQTIESLNLLKMRNT-EF 750 (1222)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dG-----v--~~qT~e~l~~lk~~~v-P~ 750 (1222)
...++|+|+|||..|...++.|++++|+++|||.+..| + ..||++|..+++..++ .+
T Consensus 156 ---------------~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~l 220 (501)
T KOG0459|consen 156 ---------------NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHL 220 (501)
T ss_pred ---------------ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceE
Confidence 24599999999999999999999999999999999754 2 3699999999999986 68
Q ss_pred EEEEeeecccc-CcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCC
Q 000923 751 IVALNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG 829 (1222)
Q Consensus 751 IVviNKiDl~~-~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeG 829 (1222)
||++||||-+. +|.. +++.+....+...|...|++.- ..+.++|+|+++|.+
T Consensus 221 Vv~vNKMddPtvnWs~------------------eRy~E~~~k~~~fLr~~g~n~~---------~d~~f~p~sg~tG~~ 273 (501)
T KOG0459|consen 221 IVLINKMDDPTVNWSN------------------ERYEECKEKLQPFLRKLGFNPK---------PDKHFVPVSGLTGAN 273 (501)
T ss_pred EEEEEeccCCccCcch------------------hhHHHHHHHHHHHHHHhcccCC---------CCceeeecccccccc
Confidence 99999999865 5643 3455566667777777787642 567899999999999
Q ss_pred hhhHHHHH-HHHHHHHHHHhhh--------ccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeee
Q 000923 830 IPDLLLLL-VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTI 900 (1222)
Q Consensus 830 I~eLl~~i-~~~~~~~l~e~l~--------~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~I 900 (1222)
+.+....+ .||....+++.++ .+.|++|+|.+- .+.+|+++.|.|.+|.++.|+.+++.+...
T Consensus 274 ~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~K--ykdmGTvv~GKvEsGsi~kg~~lvvMPnk~------ 345 (501)
T KOG0459|consen 274 VKDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPVANK--YKDMGTVVGGKVESGSIKKGQQLVVMPNKT------ 345 (501)
T ss_pred hhhcccccCCcccCCccceehhccCcccccCCCCEEeehhhh--ccccceEEEEEecccceecCCeEEEccCCc------
Confidence 99988633 3443333333222 356789999874 356889999999999999999999876432
Q ss_pred eeccCCCCCcceeeeeeeeehhhh---ccccCcEEeecCcccccCCCceEEeCCCcc
Q 000923 901 RALLTPHPMKELRVKGTYLHHKQI---KAAQGIKITAQGLEHAIAGTGLYVVGPDDD 954 (1222)
Q Consensus 901 r~ll~p~p~~~~rvk~~~~~~~ev---~aa~g~~i~~~gL~~~~aG~~l~v~~~e~~ 954 (1222)
.+.|.++|....++ -++..+++.+.|++.-..-.+|+++.+...
T Consensus 346 ----------~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n~ 392 (501)
T KOG0459|consen 346 ----------NVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNNP 392 (501)
T ss_pred ----------ceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCCc
Confidence 12233333332333 334458899999887655566888877653
No 66
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.85 E-value=3.5e-21 Score=216.49 Aligned_cols=208 Identities=24% Similarity=0.259 Sum_probs=130.1
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeE--eeeeeEeeccc-cccchhhccc---ccccccCCeEeecCC
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTP 703 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~--~iga~~~~~~~-~~~~~~~~~~---~~~~~~~~i~~IDTP 703 (1222)
.|+ |+|+||+|+|||||+++|+...-.....+.+.. ..+.+...+.. .+.+...+.. .+.|....|+|||||
T Consensus 2 ~Rn--i~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTP 79 (267)
T cd04169 2 RRT--FAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTP 79 (267)
T ss_pred ccE--EEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECC
Confidence 465 999999999999999999853211111110000 00111111111 0111111111 223444569999999
Q ss_pred CchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhH---
Q 000923 704 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT--- 780 (1222)
Q Consensus 704 Ghe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~--- 780 (1222)
||.+|...++++++.+|++|||||+..|+..++..+|+++...++|+|||+||||+...+ ...+...++..+.
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~----~~~~~~~l~~~l~~~~ 155 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD----PLELLDEIEEELGIDC 155 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC----HHHHHHHHHHHHCCCc
Confidence 999999999999999999999999999999999999999988999999999999986321 0001111111000
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHHcCCchhhhhcc---------cc
Q 000923 781 ---------------------------------------DVQNEFNMRLVQIVTQLKEQGMNTELYYKN---------KD 812 (1222)
Q Consensus 781 ---------------------------------------~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~---------~~ 812 (1222)
.+...+.+.+.+..+.|++.++..+..... ..
T Consensus 156 ~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~~~~~~~~~~~~~~~~ 235 (267)
T cd04169 156 TPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREELELLEGAGPEFDQEAFL 235 (267)
T ss_pred eeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCCCccchhhhHHHhHHHHH
Confidence 000011133333344444444432221111 12
Q ss_pred CCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 813 RGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 813 ~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
.+..+||+++||.++.||..||+.|..++|.
T Consensus 236 ~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~ 266 (267)
T cd04169 236 AGELTPVFFGSALNNFGVQELLDALVDLAPA 266 (267)
T ss_pred cCCEEEEEecccccCcCHHHHHHHHHHHCCC
Confidence 3688999999999999999999999998864
No 67
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=99.85 E-value=9.2e-22 Score=189.90 Aligned_cols=92 Identities=38% Similarity=0.601 Sum_probs=82.5
Q ss_pred ccCCceEEEeCCcccHHHHHHHhc---cCCeeeeEEEeeeCccccchHHHHHhhhhccccCcEEEEecCCCCHHHHHHHH
Q 000923 975 KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAE 1051 (1222)
Q Consensus 975 ~~~~~vivkadt~GSlEAl~~~L~---~~~~~i~i~~~~vG~It~~DV~~A~~~~~~~~~~a~IlaFnVk~~~~a~~~A~ 1051 (1222)
....+||||||++||||||.++|. +++++++|+++|||+||++||.+|++ ++|+||||||++++.++.+|+
T Consensus 14 ~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~------~~a~Ii~FNv~~~~~~~~~a~ 87 (108)
T PF11987_consen 14 IKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASA------SNAIIIAFNVKVSPDAKDLAK 87 (108)
T ss_dssp SSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHH------HC-EEEESSS-B-HHHHHCHH
T ss_pred CceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHh------hCCEEEEeeCCCCHHHHHHHH
Confidence 456799999999999999998864 56899999999999999999999997 589999999999999999999
Q ss_pred HhCCeEEEcccccchHHHHHH
Q 000923 1052 ELGVKIFIADIIYHLFDQFTA 1072 (1222)
Q Consensus 1052 ~~gV~I~~~~IIY~Lid~~~~ 1072 (1222)
++||+|++|+|||+|+|++++
T Consensus 88 ~~~V~I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 88 KSGVKIRSHNVIYDLIDDIKK 108 (108)
T ss_dssp SSTSEEEESTTCCHHHHHHHH
T ss_pred HcCCEEEEeCHHHHHHHHhhC
Confidence 999999999999999999974
No 68
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.85 E-value=1.3e-20 Score=195.99 Aligned_cols=165 Identities=55% Similarity=0.828 Sum_probs=127.1
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
|+|+|+|++|+|||||+++|+...+.....+++|++++.+.+.+.. .....++|||||||..|..++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~~~~iiDtpG~~~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-------------LKIPGITFIDTPGHEAFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-------------CCcceEEEEeCCCcHHHHHHH
Confidence 6799999999999999999998887776777888888766665431 012359999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 792 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~ 792 (1222)
.+++..+|++|+|||+.++...++.+++..+...++|++||+||+|+... .. ..
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-------~~-------------------~~ 121 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA-------NP-------------------ER 121 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc-------cH-------------------HH
Confidence 99999999999999999999999999999999999999999999998621 00 00
Q ss_pred HHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 793 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 793 i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
+...+........ ..++..++++++||.+|.||.+|+++|..+.
T Consensus 122 ~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 122 VKNELSELGLQGE-----DEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHhhcccc-----ccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 1111111110000 0123457999999999999999999998654
No 69
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.84 E-value=2e-20 Score=202.56 Aligned_cols=177 Identities=25% Similarity=0.250 Sum_probs=124.1
Q ss_pred EEEEEccCCCCchhhhhhhcCCc---ccccccCceeEeeeeeEeeccccc-cchhhcc--------c--------ccccc
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIR-ERTRELK--------A--------NATLK 693 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~---v~~~e~~GIT~~iga~~~~~~~~~-~~~~~~~--------~--------~~~~~ 693 (1222)
+|+|+||+|||||||+.+|.+.. ......+|+|..++...+.|.... .++.... . .....
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 59999999999999999997652 234456788888887777664110 0000000 0 00001
Q ss_pred cCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCC-CChhHHHHHHHHHhcCC-ceEEEEeeeccccCcccCCCchH
Q 000923 694 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPI 771 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dG-v~~qT~e~l~~lk~~~v-P~IVviNKiDl~~~w~~~~~a~i 771 (1222)
...|+|||||||..|...+.+++..+|++|||||+.++ +.++|.++|..+...++ |+|||+||+|+... ..+
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~------~~~ 155 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE------EQA 155 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH------HHH
Confidence 25699999999999999999999999999999999984 78899999988877776 68999999999621 111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 772 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 772 ~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
...+..+...+.... ...+++|++||++|.||.+|+++|...++.
T Consensus 156 ---------------~~~~~~i~~~~~~~~------------~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 156 ---------------LENYEQIKKFVKGTI------------AENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred ---------------HHHHHHHHHHHhccc------------cCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 111112222222111 124689999999999999999999876543
No 70
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.1e-20 Score=205.91 Aligned_cols=282 Identities=21% Similarity=0.273 Sum_probs=184.1
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccC--------------ceeEeeeeeEeeccccccchhhccc--------ccc
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAG--------------GITQQIGATYFPAENIRERTRELKA--------NAT 691 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~--------------GIT~~iga~~~~~~~~~~~~~~~~~--------~~~ 691 (1222)
.|+++|..|+|||||++.|.......|..+ |-|..|..-.+-++. +..-+.. ...
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~---~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDN---RGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccc---cccccchhhcccHHHHHh
Confidence 489999999999999999986655544321 111111111111110 0000000 001
Q ss_pred cccCCeEeecCCCchhhHHHHHhhccc--CceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCc
Q 000923 692 LKVPGLLVIDTPGHESFTNLRSRGSGL--CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 769 (1222)
Q Consensus 692 ~~~~~i~~IDTPGhe~F~~~~~rg~~~--aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a 769 (1222)
-...-++|||.+||..|...+..++.. .++++|||.|+.|+.-.|++||.++.++++||+|+++|||++..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~------- 318 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDR------- 318 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccc-------
Confidence 112349999999999999888888765 79999999999999999999999999999999999999999831
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcc-----------ccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 770 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKN-----------KDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 770 ~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~-----------~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
.-+...+..+.+.|...|+....+.-. ...+..+|||.+|+.+|+|+.-|..+|.
T Consensus 319 --------------~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 319 --------------QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred --------------hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 112223344445555555532221110 1125778999999999999965554443
Q ss_pred HHHHHHH--HHhh-hccccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeee
Q 000923 839 QWTQKTM--VEKL-TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK 915 (1222)
Q Consensus 839 ~~~~~~l--~e~l-~~~~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk 915 (1222)
.+++.. .++. ....+..++|.|+|.++.+|+++.+.+..|.|+.|+.+++++.....+ ..++|.
T Consensus 385 -~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F------------~~itV~ 451 (591)
T KOG1143|consen 385 -CLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTF------------EKITVG 451 (591)
T ss_pred -hcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCce------------eEEEee
Confidence 332211 0111 113456789999999999999999999999999999999887653222 223333
Q ss_pred eeeeeh---hhhccccCcEEeecCcccccCCCceEEeCCC
Q 000923 916 GTYLHH---KQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 952 (1222)
Q Consensus 916 ~~~~~~---~ev~aa~g~~i~~~gL~~~~aG~~l~v~~~e 952 (1222)
++..+. .-+.+++...+++...+.+....+++.+.++
T Consensus 452 sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 452 SIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred eeeccccceeeecCccceeeeccCCCccchhcceEEeecC
Confidence 332222 2244566667777766667777788877543
No 71
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=8.7e-21 Score=206.10 Aligned_cols=172 Identities=26% Similarity=0.396 Sum_probs=122.7
Q ss_pred EEEEccCCCCchhhhhhhcCCcc--c-----------------------------ccccCceeEeeeeeEeeccccccch
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNV--Q-----------------------------EGEAGGITQQIGATYFPAENIRERT 683 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v--~-----------------------------~~e~~GIT~~iga~~~~~~~~~~~~ 683 (1222)
|+|+||+|||||||+++|+...- . ....+|+|.+....++.+
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~------- 74 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST------- 74 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-------
Confidence 89999999999999999974321 1 011245555554444433
Q ss_pred hhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEeeeccccC
Q 000923 684 RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYG 762 (1222)
Q Consensus 684 ~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNKiDl~~~ 762 (1222)
....++|||||||..|...+..++..+|++|||||+..++..++..++.++...++| +|||+||||+..
T Consensus 75 ---------~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~- 144 (208)
T cd04166 75 ---------PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD- 144 (208)
T ss_pred ---------CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc-
Confidence 334699999999999988888899999999999999999999999998888888865 677999999862
Q ss_pred cccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 763 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 763 w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
|. . ..+...+..+...+...++ ..+++|++||++|.||.+....+.||..
T Consensus 145 ~~----~--------------~~~~~i~~~~~~~~~~~~~------------~~~~ii~iSA~~g~ni~~~~~~~~w~~g 194 (208)
T cd04166 145 YS----E--------------EVFEEIVADYLAFAAKLGI------------EDITFIPISALDGDNVVSRSENMPWYSG 194 (208)
T ss_pred CC----H--------------HHHHHHHHHHHHHHHHcCC------------CCceEEEEeCCCCCCCccCCCCCCCCCC
Confidence 11 0 0111112222223333332 2358999999999999988766666667
Q ss_pred HHHHHhhhccc
Q 000923 843 KTMVEKLTFRN 853 (1222)
Q Consensus 843 ~~l~e~l~~~~ 853 (1222)
+.|++.++...
T Consensus 195 ~~~~~~~~~~~ 205 (208)
T cd04166 195 PTLLEHLETVP 205 (208)
T ss_pred CcHHHHHhcCC
Confidence 77887776433
No 72
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=4.2e-20 Score=197.92 Aligned_cols=181 Identities=25% Similarity=0.365 Sum_probs=125.1
Q ss_pred EEEEEccCCCCchhhhhhhcCC-------cccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCch
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGT-------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 706 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~-------~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe 706 (1222)
+|+|+||+|+|||||+++|+.. .......+|+|.+++...+.+.....+.. ..........++|||||||.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRE--LINPGEENLQITLVDCPGHA 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccc--cccccccCceEEEEECCCcH
Confidence 5999999999999999999862 12233456788888766665532110000 00001123469999999999
Q ss_pred hhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 707 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 707 ~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
.|.....+++..+|++|+|||+.++...++.+++.++...++|+|||+||+|+... ..+... ...+...
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~~~----~~~~~~~- 148 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE------EERERK----IEKMKKK- 148 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH------HHHHHH----HHHHHHH-
Confidence 99888888889999999999999999999988888777788999999999998621 111000 0011111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 845 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l 845 (1222)
+...+...++ ..++++++||++|.|+.+|+..|...++.|+
T Consensus 149 ------l~~~~~~~~~------------~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 149 ------LQKTLEKTRF------------KNSPIIPVSAKPGGGEAELGKDLNNLIVLPL 189 (192)
T ss_pred ------HHHHHHhcCc------------CCCCEEEEeccCCCCHHHHHHHHHhcccccc
Confidence 1111211111 2368999999999999999999998876553
No 73
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.83 E-value=3.1e-20 Score=203.72 Aligned_cols=184 Identities=25% Similarity=0.279 Sum_probs=122.5
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccc--------------cCceeEeeeeeEeecccccc---chhhcc-----ccccc
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRE---RTRELK-----ANATL 692 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e--------------~~GIT~~iga~~~~~~~~~~---~~~~~~-----~~~~~ 692 (1222)
|+|+||+++|||||+++|....+..+. .+|+|..+....+.+..... ...... .....
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEK 81 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeee
Confidence 899999999999999999865443221 24555433222221111000 000000 00112
Q ss_pred ccCCeEeecCCCchhhHHHHHhhcc--cCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCch
Q 000923 693 KVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 770 (1222)
Q Consensus 693 ~~~~i~~IDTPGhe~F~~~~~rg~~--~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~ 770 (1222)
....++|||||||..|...+.+++. .+|++|||||+.+|+++++.+++.++...++|+|||+||+|+.. .
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~-------~- 153 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP-------A- 153 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC-------H-
Confidence 3456999999999999998888885 79999999999999999999999999999999999999999862 1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchh-----------hhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 771 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTE-----------LYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 771 i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e-----------~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
..+...+..+...|...|+..- ....+..++..+|+|++||+||.|++.|+.+|..
T Consensus 154 -------------~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 154 -------------NILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred -------------HHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1122222333333333232210 1112223466789999999999999999888764
No 74
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=1.6e-20 Score=205.60 Aligned_cols=174 Identities=26% Similarity=0.404 Sum_probs=120.7
Q ss_pred EEEEEccCCCCchhhhhhhcCCc-------------------------------ccccccCceeEeeeeeEeeccccccc
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPAENIRER 682 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~-------------------------------v~~~e~~GIT~~iga~~~~~~~~~~~ 682 (1222)
+|+|+||+|||||||+++|+... ......+|+|.++....+.+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence 38999999999999999996321 011123555655555554433
Q ss_pred hhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccC-------CCChhHHHHHHHHHhcC-CceEEEE
Q 000923 683 TRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-------GLEPQTIESLNLLKMRN-TEFIVAL 754 (1222)
Q Consensus 683 ~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~d-------Gv~~qT~e~l~~lk~~~-vP~IVvi 754 (1222)
...++|||||||.+|...+.+++..+|++|||||+.+ ++..||.+++.++...+ .|+|||+
T Consensus 76 -----------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivv 144 (219)
T cd01883 76 -----------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV 144 (219)
T ss_pred -----------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEE
Confidence 3459999999999999999999999999999999998 57789999998888777 5789999
Q ss_pred eeecccc-CcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhH
Q 000923 755 NKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 833 (1222)
Q Consensus 755 NKiDl~~-~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eL 833 (1222)
||||++. .|.. ..+...+..+...|...++. ...++|||+||++|.||.+-
T Consensus 145 NK~Dl~~~~~~~------------------~~~~~i~~~l~~~l~~~~~~----------~~~~~ii~iSA~tg~gi~~~ 196 (219)
T cd01883 145 NKMDDVTVNWSE------------------ERYDEIKKELSPFLKKVGYN----------PKDVPFIPISGLTGDNLIEK 196 (219)
T ss_pred EccccccccccH------------------HHHHHHHHHHHHHHHHcCCC----------cCCceEEEeecCcCCCCCcC
Confidence 9999973 1210 11111122222334433432 13579999999999999755
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 000923 834 LLLLVQWTQKTMVEKLTF 851 (1222)
Q Consensus 834 l~~i~~~~~~~l~e~l~~ 851 (1222)
-..+.||....|++.+..
T Consensus 197 ~~~~~w~~g~~l~~~l~~ 214 (219)
T cd01883 197 SENMPWYKGPTLLEALDS 214 (219)
T ss_pred CCCCCCccCCcHHHHHhC
Confidence 444444445556665543
No 75
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=1.1e-19 Score=187.89 Aligned_cols=158 Identities=33% Similarity=0.462 Sum_probs=115.7
Q ss_pred EEEEEccCCCCchhhhhhhcCCc---ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~---v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
+|+|+|++|+|||||+++|++.. +......++|+.++...+.+.. ...++|||||||..|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS---------------GKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC---------------CcEEEEEECCChHHHHH
Confidence 69999999999999999998643 2223345677776655444321 13499999999999988
Q ss_pred HHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCC-ceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~v-P~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.+..++..+|++|||+|+++++.+++.+.+..+...+. |+|+|+||+|+... . .+...
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~-------~--------------~~~~~ 125 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE-------D--------------WLELV 125 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH-------H--------------HHHHH
Confidence 88888999999999999999988999988887777776 99999999999621 0 00011
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
...+...+...++ ..++++++||++|.||.+++..|..
T Consensus 126 ~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 126 EEEIRELLAGTFL------------ADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHhcCc------------CCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 1222222322111 2358999999999999999888753
No 76
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.81 E-value=6.7e-20 Score=200.36 Aligned_cols=121 Identities=32% Similarity=0.429 Sum_probs=94.0
Q ss_pred EEEEEccCCCCchhhhhhhcCCc----------------ccccccCceeEeeeeeEeeccccccchhhcccccccccCCe
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGL 697 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~----------------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i 697 (1222)
+|+|+||++||||||+++|+... ......+|||+......+.+...... ...-....|
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~------~~~~~~~~i 75 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED------KADGNEYLI 75 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc------ccCCCceEE
Confidence 39999999999999999997421 11223466776665544444321000 000012458
Q ss_pred EeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 698 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 698 ~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
+|||||||.+|...+.++++.+|++|||||+..|+.+||..+|+.+...++|+|||+||||+.
T Consensus 76 ~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 76 NLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 999999999999999999999999999999999999999999999998899999999999986
No 77
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.81 E-value=9.8e-20 Score=205.53 Aligned_cols=208 Identities=20% Similarity=0.240 Sum_probs=139.4
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccc-cccchhhccc---ccccccCCeEeecCCCchhhH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~-~~~~~~~~~~---~~~~~~~~i~~IDTPGhe~F~ 709 (1222)
+|+|+||+|+|||||+++|+.........+.+. .|.+...+.. .+.+...+.. ...|....++|||||||.+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~--~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVE--DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeec--CCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH
Confidence 389999999999999999975321111111111 1111111110 0011111111 123344569999999999999
Q ss_pred HHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccC---------------------------
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYG--------------------------- 762 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~--------------------------- 762 (1222)
..+.+++..+|++|+|||+..|...+|..+|+.+...++|++||+||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~ 158 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEG 158 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCC
Confidence 99999999999999999999999999999999999999999999999997631
Q ss_pred ----------------cccC---CCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcc---------ccCC
Q 000923 763 ----------------WKTC---RNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKN---------KDRG 814 (1222)
Q Consensus 763 ----------------w~~~---~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~---------~~~g 814 (1222)
|... ...+++..+.......+..+-+.+....+.|++.+|........ ...+
T Consensus 159 ~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~~ 238 (268)
T cd04170 159 DDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALRAG 238 (268)
T ss_pred CceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 0000 00112233334444455666666666677777776654322211 1237
Q ss_pred CceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 815 ETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 815 ~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
..+||+++||+++.|+..|++.|..++|.
T Consensus 239 ~~~pv~~gSa~~~~G~~~ll~~~~~~~p~ 267 (268)
T cd04170 239 LLVPVLCGSALTNIGVRELLDALVHLLPS 267 (268)
T ss_pred CEEEEEEeeCCCCcCHHHHHHHHHHhCCC
Confidence 88999999999999999999999988764
No 78
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.81 E-value=1e-19 Score=191.69 Aligned_cols=160 Identities=30% Similarity=0.366 Sum_probs=112.1
Q ss_pred EEEEccCCCCchhhhhhhcCCc--cc-------------ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEe
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTN--VQ-------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 699 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~--v~-------------~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 699 (1222)
|+++||+++|||||+++|++.. +. ....+|+|.+...+.+.+... .-....|+|
T Consensus 3 i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-----------~~~~~~~~l 71 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-----------DGQEYLLNL 71 (179)
T ss_pred EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-----------CCCcEEEEE
Confidence 9999999999999999998532 11 011234444333222222100 001234889
Q ss_pred ecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 700 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 700 IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
||||||..|..++.+++..+|++|||||+.++...++..+|..+...++|+|+|+||+|+... ....
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~-------~~~~------ 138 (179)
T cd01890 72 IDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSA-------DPER------ 138 (179)
T ss_pred EECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcC-------CHHH------
Confidence 999999999999999999999999999999999889988888877789999999999998621 1000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 780 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 780 ~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
....+... .++ ...++|++||++|.||.+|+.+|...++
T Consensus 139 ---------~~~~~~~~---~~~------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 139 ---------VKQQIEDV---LGL------------DPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ---------HHHHHHHH---hCC------------CcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 00111111 122 1135899999999999999999987653
No 79
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.79 E-value=4.1e-19 Score=190.60 Aligned_cols=156 Identities=29% Similarity=0.336 Sum_probs=108.9
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcC--Cccccc--------------ccCceeEeeeeeEeeccccccchhhcccccccc
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRG--TNVQEG--------------EAGGITQQIGATYFPAENIRERTRELKANATLK 693 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~--~~v~~~--------------e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~ 693 (1222)
+|+ |+|+|++++|||||+++|++ ..+... ...|+|.+.....+.+ .
T Consensus 2 ~r~--i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~----------------~ 63 (194)
T cd01891 2 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY----------------K 63 (194)
T ss_pred ccE--EEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE----------------C
Confidence 454 99999999999999999985 222221 1133333332222222 2
Q ss_pred cCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHH
Q 000923 694 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 773 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~ 773 (1222)
...++|||||||..|..++..+++.+|++|||||+.++..+++..++..+...++|+|||+||+|+... .+.
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~-------~~~- 135 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDA-------RPE- 135 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCC-------CHH-
Confidence 245999999999999999999999999999999999998888888888887889999999999999621 111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhH
Q 000923 774 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 833 (1222)
Q Consensus 774 ~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eL 833 (1222)
..+..+...+...+.... .-.++++++||++|.|+.++
T Consensus 136 --------------~~~~~~~~~~~~~~~~~~--------~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 136 --------------EVVDEVFDLFIELGATEE--------QLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred --------------HHHHHHHHHHHHhCCccc--------cCccCEEEeehhcccccccc
Confidence 111222222322222111 12368999999999998665
No 80
>COG1159 Era GTPase [General function prediction only]
Probab=99.78 E-value=4.6e-18 Score=187.23 Aligned_cols=161 Identities=25% Similarity=0.392 Sum_probs=115.9
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcccc-cccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc-h
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH-E 706 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~-~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh-e 706 (1222)
.+|+..|+|+|.||+|||||+|+|++..+.. ..-...|.+. ..++. .....++.||||||. .
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~-------------I~GI~---t~~~~QiIfvDTPGih~ 66 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR-------------IRGIV---TTDNAQIIFVDTPGIHK 66 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhh-------------eeEEE---EcCCceEEEEeCCCCCC
Confidence 4677889999999999999999999887652 1111222221 11111 122367999999992 2
Q ss_pred h-------hHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 707 S-------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 707 ~-------F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
. .....+.++..+|+++||||+++++.+.....++.++..++|+|+++||+|++.. .
T Consensus 67 pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~------~---------- 130 (298)
T COG1159 67 PKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP------K---------- 130 (298)
T ss_pred cchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc------H----------
Confidence 1 2344567788899999999999999999999999999988999999999999741 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 780 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 780 ~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
..+..+...+... ..+..+||+||++|.|++.|++.|..+++
T Consensus 131 --------~~l~~~~~~~~~~-------------~~f~~ivpiSA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 131 --------TVLLKLIAFLKKL-------------LPFKEIVPISALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred --------HHHHHHHHHHHhh-------------CCcceEEEeeccccCCHHHHHHHHHHhCC
Confidence 0012222223222 23458999999999999999999988774
No 81
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.78 E-value=1.2e-18 Score=184.26 Aligned_cols=170 Identities=35% Similarity=0.439 Sum_probs=118.7
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccc----------------cCceeEeeeeeEeeccccccchhhcccccccccCCeE
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGE----------------AGGITQQIGATYFPAENIRERTRELKANATLKVPGLL 698 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e----------------~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~ 698 (1222)
|+|+|.+|+|||||+++|++....... .+|+|.+.....+.+ ....++
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 65 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW----------------PDRRVN 65 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee----------------CCEEEE
Confidence 899999999999999999866544322 123333322222222 124599
Q ss_pred eecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHh
Q 000923 699 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 778 (1222)
Q Consensus 699 ~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q 778 (1222)
||||||+..|...+..++..+|++|+|||+.++...+..+++..+...+.|++||+||+|+... ..+
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~------~~~------- 132 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGE------EDL------- 132 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcch------hcH-------
Confidence 9999999999999999999999999999999999999999999998889999999999999720 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 779 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 779 ~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
...+..+...+...++.... .........++|+++||++|.|+.+++.+|..+++
T Consensus 133 --------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 133 --------EEVLREIKELLGLIGFISTK-EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred --------HHHHHHHHHHHccccccchh-hhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 11112222223222211000 00000124579999999999999999999987764
No 82
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=99.76 E-value=1.7e-18 Score=165.40 Aligned_cols=108 Identities=65% Similarity=1.017 Sum_probs=103.0
Q ss_pred ccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccccCcEEee
Q 000923 855 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 934 (1222)
Q Consensus 855 ~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa~g~~i~~ 934 (1222)
++|+|+|++.++|+|++++++|++|+|+.||+|++++.+||++++||+|++|+|++++|+++.|.+++++.+++|++|.+
T Consensus 1 ~~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~ 80 (110)
T cd03703 1 LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred CcEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCceEEeCCCccHHHHHHHH
Q 000923 935 QGLEHAIAGTGLYVVGPDDDLEDVKEEA 962 (1222)
Q Consensus 935 ~gL~~~~aG~~l~v~~~e~~~~~~~~~~ 962 (1222)
+||+.+.+|+.|+++.++++++.+.++.
T Consensus 81 ~gL~~v~aG~~~~vv~~e~~a~~~~~~~ 108 (110)
T cd03703 81 PDLEKAIAGSPLLVVGPEDEIEELKEEV 108 (110)
T ss_pred CCCccccCCCEEEEECCHHHHHHHHHHH
Confidence 9999999999999999998888776654
No 83
>PRK15494 era GTPase Era; Provisional
Probab=99.76 E-value=1.3e-17 Score=194.16 Aligned_cols=215 Identities=24% Similarity=0.268 Sum_probs=136.9
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccc-cccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh-
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 707 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~-~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~- 707 (1222)
.+...|+|+|++|+|||||+++|++..+.. ....+.|.+.....+. +....++||||||+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~----------------~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT----------------LKDTQVILYDTPGIFEP 113 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE----------------eCCeEEEEEECCCcCCC
Confidence 456689999999999999999999876542 1223334332211111 1224589999999732
Q ss_pred h-------HHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhH
Q 000923 708 F-------TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 780 (1222)
Q Consensus 708 F-------~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~ 780 (1222)
| ....+..+..+|++|||||+.+++...+..++..++..+.|+|+|+||+|+... .
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-------~---------- 176 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-------Y---------- 176 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-------c----------
Confidence 2 222334578899999999999888877777788888888899999999998520 0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH-----------------
Q 000923 781 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK----------------- 843 (1222)
Q Consensus 781 ~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~----------------- 843 (1222)
+..+...+... ....++||+||++|.|+.+|+.+|..+++.
T Consensus 177 ---------~~~~~~~l~~~-------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~ 234 (339)
T PRK15494 177 ---------LNDIKAFLTEN-------------HPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRF 234 (339)
T ss_pred ---------HHHHHHHHHhc-------------CCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Confidence 11112222211 123589999999999999999999987632
Q ss_pred ----HHHHh----hhcccccc-ceEEEEEEEcC-ceeEEEEEEEeeeecCCCEEEEccCCCceeeeee
Q 000923 844 ----TMVEK----LTFRNELQ-CTVLEVKVIEG-HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR 901 (1222)
Q Consensus 844 ----~l~e~----l~~~~~~~-~~VlEv~~~~g-~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir 901 (1222)
.+.+. +...-|.. ...++.+.... ....+.+.|+ +-+.++.-.|+|.+|..+.+|.
T Consensus 235 ~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~--v~~~sqk~iiiG~~g~~ik~i~ 300 (339)
T PRK15494 235 IAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIV--VSRESYKTIILGKNGSKIKEIG 300 (339)
T ss_pred HHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEE--ECCCCceeEEEcCCcHHHHHHH
Confidence 11111 11122222 22233333322 2233556666 5577888888888876655554
No 84
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.75 E-value=3e-17 Score=185.53 Aligned_cols=154 Identities=19% Similarity=0.279 Sum_probs=104.5
Q ss_pred EEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh----
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 708 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F---- 708 (1222)
.|+|+|++|+|||||+++|++..+. .....++|.+....... .....+.||||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~----------------~~~~qii~vDTPG~~~~~~~l 65 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT----------------TGASQIIFIDTPGFHEKKHSL 65 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE----------------cCCcEEEEEECcCCCCCcchH
Confidence 5899999999999999999987654 23334455442111111 11135899999996431
Q ss_pred ----HHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 709 ----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 709 ----~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
...+..++..+|++|+|||++++...+ ..++..+...+.|+|+|+||+|+.. ...+
T Consensus 66 ~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~------~~~~------------- 125 (270)
T TIGR00436 66 NRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF------KDKL------------- 125 (270)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC------HHHH-------------
Confidence 223456778899999999999876554 4556677778999999999999862 0000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 785 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 785 ~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
......+... ....++|++||++|.|+++|++.|..+++
T Consensus 126 ------~~~~~~~~~~-------------~~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 126 ------LPLIDKYAIL-------------EDFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred ------HHHHHHHHhh-------------cCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 0011111111 11237999999999999999999988764
No 85
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.75 E-value=3.8e-18 Score=186.05 Aligned_cols=171 Identities=22% Similarity=0.293 Sum_probs=112.6
Q ss_pred EEEEccCCCCchhhhhhhcCCccccc-------------------ccCceeEeeeeeEeeccccccchhhcccccccccC
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEG-------------------EAGGITQQIGATYFPAENIRERTRELKANATLKVP 695 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~-------------------e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1222)
|+|+||+|||||||+++|+....... ..+|+|.......+.+.... -...
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~-----------~~~~ 71 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSK-----------GKSY 71 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCC-----------CCEE
Confidence 99999999999999999985432211 12334433333333222100 0113
Q ss_pred CeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHH
Q 000923 696 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
.++|||||||.+|...+.+++..+|++|+|||+.++...++..+++.+...++|+|+|+||+|++.. . ...+
T Consensus 72 ~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~-~--~~l~----- 143 (213)
T cd04167 72 LFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLIL-E--LKLP----- 143 (213)
T ss_pred EEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcc-c--ccCC-----
Confidence 4899999999999999999999999999999999999999988888888788999999999998620 0 0000
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChh
Q 000923 776 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 831 (1222)
Q Consensus 776 ~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~ 831 (1222)
.......+...+..+...+...++.....+. .-...++..||..|+++.
T Consensus 144 ---~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~----p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 144 ---PNDAYFKLRHIIDEVNNIIASFSTTLSFLFS----PENGNVCFASSKFGFCFT 192 (213)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCceEec----cCCCeEEEEecCCCeEEe
Confidence 0112233444444454455555543221100 011248889999999985
No 86
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=6.5e-17 Score=184.86 Aligned_cols=161 Identities=24% Similarity=0.355 Sum_probs=111.2
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcccc-cccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 707 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~-~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~ 707 (1222)
..|...|+|+|++|+|||||+++|++..+.. ......|.+.....+. .....++||||||+..
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~----------------~~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT----------------EDDAQIIFVDTPGIHK 65 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE----------------cCCceEEEEECCCCCC
Confidence 3577889999999999999999999876532 1112222211111000 0113599999999643
Q ss_pred --------hHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 708 --------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 708 --------F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
+...+...+..+|++|+|||+++++......++..+...++|+|+|+||+|+... ..
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~------~~--------- 130 (292)
T PRK00089 66 PKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD------KE--------- 130 (292)
T ss_pred chhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC------HH---------
Confidence 2344556788899999999999988777777888888778999999999999721 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 780 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 780 ~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.+......+... ....+++++||++|.|+++|+..|..+++
T Consensus 131 ---------~l~~~~~~l~~~-------------~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 131 ---------ELLPLLEELSEL-------------MDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred ---------HHHHHHHHHHhh-------------CCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 011122222211 12458999999999999999999987763
No 87
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.73 E-value=7.5e-18 Score=173.35 Aligned_cols=147 Identities=24% Similarity=0.314 Sum_probs=103.2
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh-----
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF----- 708 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F----- 708 (1222)
.|+++|.+|+|||||+|+|++.....+.++|+|.+.....+.+.. ..+.||||||..++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~----------------~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD----------------QQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT----------------EEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC----------------ceEEEEECCCcccCCCCCc
Confidence 599999999999999999999998889999999887666555432 34999999995433
Q ss_pred -HHHHHhh--cccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 709 -TNLRSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 709 -~~~~~rg--~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
-.....+ ...+|++|+|+|+++ ..+....+..+..+++|+|+|+||+|+.... ...+
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~----g~~i-------------- 125 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERK----GIEI-------------- 125 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHT----TEEE--------------
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHc----CCEE--------------
Confidence 1122223 357999999999987 3455566677788899999999999986210 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 837 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i 837 (1222)
....+...| .+|+||+||.+|.|+++|++.|
T Consensus 126 ---d~~~Ls~~L------------------g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 126 ---DAEKLSERL------------------GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ----HHHHHHHH------------------TS-EEEEBTTTTBTHHHHHHHH
T ss_pred ---CHHHHHHHh------------------CCCEEEEEeCCCcCHHHHHhhC
Confidence 011111111 2699999999999999998765
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.72 E-value=6.9e-17 Score=167.90 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=105.7
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|++++|||||+++|+...+.......+...+......... ....+.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEG--------------KTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECC--------------EEEEEEEEeCCCchhhhhhhH
Confidence 599999999999999999987766543332222222221111111 112488999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHH-HHHHHHhc--CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 790 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~~--~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l 790 (1222)
.++..+|++|||+|+++....+... ++..++.. ++|+|||+||+|+... . .
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~--------~------------------~ 121 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS--------V------------------T 121 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh--------H------------------H
Confidence 9999999999999998765544433 34445443 7899999999998410 0 0
Q ss_pred HHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 791 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 791 ~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.... .+... ..++++++||++|.|+.+++..+...+.
T Consensus 122 ~~~~-~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 122 QKKF-NFAEK--------------HNLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred HHHH-HHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0000 11110 1258999999999999999999886543
No 89
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.72 E-value=4.1e-17 Score=167.08 Aligned_cols=147 Identities=25% Similarity=0.304 Sum_probs=106.3
Q ss_pred EEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH----
Q 000923 636 CIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN---- 710 (1222)
Q Consensus 636 ~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~---- 710 (1222)
+|+|++|+|||||+++|++.+.. .....++|.......+.+. ...+.|||||||..+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~i~DtpG~~~~~~~~~~ 64 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG----------------GREFILIDTGGIEPDDEGISK 64 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC----------------CeEEEEEECCCCCCchhHHHH
Confidence 58999999999999999876532 2233445544333222221 23589999999988543
Q ss_pred ----HHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 711 ----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 711 ----~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
.....+..+|++|+|+|+.++....+..++.+++..++|+|+|+||+|+... ..
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-------~~--------------- 122 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE-------ED--------------- 122 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh-------HH---------------
Confidence 3456678899999999999988888888888888889999999999999631 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
....+...+ ..+++++||++|.|+.+++.+|+++
T Consensus 123 ------~~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 123 ------EAAEFYSLG--------------FGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ------HHHHHHhcC--------------CCCeEEEecccCCCHHHHHHHHHhh
Confidence 011122222 1268999999999999999998764
No 90
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=5.8e-17 Score=168.73 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=105.3
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
.+.|+|+|++|+|||||+++|+...+.......++.++....+.+.... ..++|||||||..|..+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~l~i~D~~G~~~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKR--------------VKLQIWDTAGQERFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEE--------------EEEEEEECCChHHHHHH
Confidence 3569999999999999999998766544332233222222222222110 24899999999999999
Q ss_pred HHhhcccCceeEEEecccCCCChhHHHH-HHHHH---hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~qT~e~-l~~lk---~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
+...++.+|++|||+|+++....+.... +..+. ..++|+|||+||+|+.... ...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~----~~~----------------- 127 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR----EVL----------------- 127 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc----ccC-----------------
Confidence 9999999999999999988544333322 23333 2478999999999986310 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
........... ...+++++||++|.|+.+++..|...
T Consensus 128 --~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 128 --FEEACTLAEKN--------------GMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred --HHHHHHHHHHc--------------CCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 00111111111 22478999999999999999988754
No 91
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=1.9e-16 Score=190.61 Aligned_cols=162 Identities=22% Similarity=0.297 Sum_probs=116.5
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh-
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF- 708 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F- 708 (1222)
..+.|+|+|++++|||||+++|++... ......|+|.+.....+.+. ...++||||||+..+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~----------------~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN----------------GKKYLLIDTAGIRRKG 234 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC----------------CcEEEEEECCCccccc
Confidence 446799999999999999999997653 33455677766544443332 134899999996433
Q ss_pred ---------HHHH-HhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHh
Q 000923 709 ---------TNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 778 (1222)
Q Consensus 709 ---------~~~~-~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q 778 (1222)
..++ .+++..+|++|||||+.+|++.++..++.++...++|+|||+||+|++.. ..
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~------~~-------- 300 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD------EK-------- 300 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC------HH--------
Confidence 2222 35788899999999999999999999999999899999999999999610 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 779 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 779 ~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.+..+...+... +. .-..++++++||++|.||.+++.++..++.
T Consensus 301 ----------~~~~~~~~~~~~-~~---------~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 301 ----------TREEFKKELRRK-LP---------FLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred ----------HHHHHHHHHHHh-cc---------cCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 011111122111 00 013469999999999999999999887664
No 92
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.70 E-value=1.3e-16 Score=168.97 Aligned_cols=153 Identities=24% Similarity=0.340 Sum_probs=105.8
Q ss_pred ccccCCCCEEEEEccCCCCchhhhhhhcCCcc--cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCC
Q 000923 626 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP 703 (1222)
Q Consensus 626 ~~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~v--~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTP 703 (1222)
..+..+.+.|+|+|++|+|||||+++|++..+ ......|.|+++..+.+ . ..+.|||||
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-----------------~~~~liDtp 72 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-----------------DGFRLVDLP 72 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-----------------CcEEEEeCC
Confidence 33446778899999999999999999997652 22234455555432221 1 248999999
Q ss_pred Cc----------hhhHHHHHhhc---ccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCch
Q 000923 704 GH----------ESFTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 770 (1222)
Q Consensus 704 Gh----------e~F~~~~~rg~---~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~ 770 (1222)
|+ ..|..++..++ ..+|++|+|||+..++..++..+++++...++|+|||+||+|+... .+
T Consensus 73 G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~------~~ 146 (179)
T TIGR03598 73 GYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKK------SE 146 (179)
T ss_pred CCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCH------HH
Confidence 95 34554444443 3468999999999999999998899998899999999999998621 11
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChh
Q 000923 771 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 831 (1222)
Q Consensus 771 i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~ 831 (1222)
+...+..+...|... +..+++|++||++|+||.
T Consensus 147 ---------------~~~~~~~i~~~l~~~-------------~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 147 ---------------LNKQLKKIKKALKKD-------------ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred ---------------HHHHHHHHHHHHhhc-------------cCCCceEEEECCCCCCCC
Confidence 111222333333322 123589999999999984
No 93
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.6e-17 Score=179.54 Aligned_cols=227 Identities=21% Similarity=0.278 Sum_probs=160.9
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCc---ccccccCceeEeeeeeEeecccccc-chhhcccc---------------
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRE-RTRELKAN--------------- 689 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~---v~~~e~~GIT~~iga~~~~~~~~~~-~~~~~~~~--------------- 689 (1222)
..-+.+|+.+||+-|||||++.++.+.. |...-.+.||+.+|........... .|..-.++
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 3344668999999999999999998643 5555678899998864322211000 00000000
Q ss_pred ----cccc-cCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCC-CChhHHHHHHHHHhcCC-ceEEEEeeeccccC
Q 000923 690 ----ATLK-VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYG 762 (1222)
Q Consensus 690 ----~~~~-~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dG-v~~qT~e~l~~lk~~~v-P~IVviNKiDl~~~ 762 (1222)
..++ ..++.|+|||||.-....+..|+...|.++|+|.++.. .+|||-+||..+..+.+ .+||+-||+|++..
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e 194 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE 194 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhH
Confidence 0111 23589999999999999999999999999999999875 78999999988887764 68889999999731
Q ss_pred cccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 763 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 763 w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.+ ..+ ....|...+. |-+ ....|+||+||.-+.||+-+.++|+..++
T Consensus 195 --------------~~---A~e----q~e~I~kFi~--~t~----------ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 195 --------------SQ---ALE----QHEQIQKFIQ--GTV----------AEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred --------------HH---HHH----HHHHHHHHHh--ccc----------cCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 00 001 1112222221 111 23469999999999999999999999887
Q ss_pred HHHHHhhhccccccceEEEEEEEcC--------ceeEEEEEEEeeeecCCCEEEEcc
Q 000923 843 KTMVEKLTFRNELQCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCG 891 (1222)
Q Consensus 843 ~~l~e~l~~~~~~~~~VlEv~~~~g--------~G~v~~~~V~~GtLk~GD~ivv~g 891 (1222)
-+.. ++..+.++.|+.+|.+.- .|-++.+.+..|+|++||.|.+-+
T Consensus 242 vPvR---df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRP 295 (466)
T KOG0466|consen 242 VPVR---DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRP 295 (466)
T ss_pred CCcc---ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecC
Confidence 6654 456677888888877632 467788889999999999997643
No 94
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.70 E-value=6.4e-17 Score=187.20 Aligned_cols=152 Identities=24% Similarity=0.359 Sum_probs=121.0
Q ss_pred CEEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh----
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 707 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~---- 707 (1222)
|+|+|+|.+|+|||||+|+|++.... .....|+|.+--.....|. ...+.+|||+|...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~----------------~~~f~lIDTgGl~~~~~~ 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWL----------------GREFILIDTGGLDDGDED 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEc----------------CceEEEEECCCCCcCCch
Confidence 78999999999999999999988754 3556788877655544443 34599999999663
Q ss_pred -hHH----HHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHH
Q 000923 708 -FTN----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 782 (1222)
Q Consensus 708 -F~~----~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~ 782 (1222)
|.. .+...+..+|++|||||+..|++++..+...+|+..+.|+|+|+||+|-..
T Consensus 68 ~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~--------------------- 126 (444)
T COG1160 68 ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK--------------------- 126 (444)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCch---------------------
Confidence 322 234567789999999999999999999999999988899999999999752
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 783 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 783 ~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.......+...|| -.++||||.+|.||.+|++.++.+++
T Consensus 127 -------~e~~~~efyslG~--------------g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 127 -------AEELAYEFYSLGF--------------GEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred -------hhhhHHHHHhcCC--------------CCceEeehhhccCHHHHHHHHHhhcC
Confidence 1123344555554 27899999999999999999998875
No 95
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=3.7e-16 Score=188.48 Aligned_cols=160 Identities=23% Similarity=0.334 Sum_probs=116.6
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCc-ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCch----
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 706 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~-v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe---- 706 (1222)
.+.|+|+|++|+|||||+++|++.. ...+...|+|.+.....+.+.. ..++||||||+.
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~----------------~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG----------------QKYTLIDTAGIRRKGK 236 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC----------------eeEEEEECCCCCCCcc
Confidence 4679999999999999999999765 3445667777765544443322 348999999963
Q ss_pred ------hhHHH-HHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 707 ------SFTNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 707 ------~F~~~-~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
.|..+ ..+++..+|++|||||+.+|+..|+..++.++...++|+|||+||+|+... ..
T Consensus 237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~-------~~-------- 301 (435)
T PRK00093 237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDE-------KT-------- 301 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCH-------HH--------
Confidence 23322 345788999999999999999999999999999999999999999998621 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 780 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 780 ~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
...+. ..+...|.. ...+|++++||++|.||.+|+..+..++.
T Consensus 302 ---~~~~~---~~~~~~l~~--------------~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 302 ---MEEFK---KELRRRLPF--------------LDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred ---HHHHH---HHHHHhccc--------------ccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00111 111111110 13469999999999999999998877653
No 96
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.69 E-value=1.5e-16 Score=164.56 Aligned_cols=154 Identities=23% Similarity=0.251 Sum_probs=107.1
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|++++|||||+++|++..+.......++..+....+..... ...|.|||||||..|..++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGK--------------RVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCE--------------EEEEEEEECcchHHHHHhHH
Confidence 5999999999999999999987765544444444333333322211 12489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HH---HHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NL---LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~---lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..++.+|++|+|+|+++....+....| .. +...++|++|++||+|+.... ...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~------------------- 124 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR----EVT------------------- 124 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc----cCC-------------------
Confidence 999999999999999986554443333 22 333578999999999986210 000
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
...+...+... + ++++++||++|.||.+++.+++.
T Consensus 125 ~~~~~~~~~~~-------------~--~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 125 FLEASRFAQEN-------------G--LLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HHHHHHHHHHc-------------C--CEEEEEECCCCCCHHHHHHHHHH
Confidence 01111111111 1 58999999999999999998875
No 97
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.69 E-value=1.7e-16 Score=163.96 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=109.5
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|++++|||||+++|++..+......+++.++....+.+.... ..++||||||+..|..++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~D~~G~~~~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKT--------------VRLQLWDTAGQERFRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEE--------------EEEEEEECCCcHHHHHHHH
Confidence 59999999999999999999888776666666666554444332211 1389999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHH-HHHHH-hc--CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLK-MR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~-l~~lk-~~--~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..+..+|++|+|+|+++..+.+.... +..+. .. ++|+|+|+||+|+... .....
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~----~~~~~------------------ 125 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK----RQVST------------------ 125 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc----CccCH------------------
Confidence 99999999999999987544444333 33332 23 4899999999998521 00000
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
......... ..++++++||.+|.|+.+++.+|...
T Consensus 126 -~~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 126 -EEGEKKAKE---------------LNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred -HHHHHHHHH---------------hCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 001111111 12589999999999999999998764
No 98
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.69 E-value=2.5e-16 Score=164.04 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=96.8
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh----
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 708 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F---- 708 (1222)
|+|+|+|++|+|||||+++|++..+......+.|..+....+.+ ....++||||||+..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY----------------KYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc----------------CceEEEEEECCCcCCccccC
Confidence 57999999999999999999987664333333333332222221 1235999999998421
Q ss_pred ------HHHHHhhcccCceeEEEecccCCCC---hhHHHHHHHHHhc--CCceEEEEeeeccccCcccCCCchHHHHHHH
Q 000923 709 ------TNLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 777 (1222)
Q Consensus 709 ------~~~~~rg~~~aD~aILVVDa~dGv~---~qT~e~l~~lk~~--~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~ 777 (1222)
..+. .....+|++|||+|+.+... .....++..++.. ++|+|||+||+|+... ..
T Consensus 65 ~~~~~~~~~~-~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------~~------- 130 (168)
T cd01897 65 RNTIEMQAIT-ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF------ED------- 130 (168)
T ss_pred CchHHHHHHH-HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch------hh-------
Confidence 1111 11234689999999987432 2223445555554 7999999999998621 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 778 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 778 q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
+.. ...+... ..++++++||++|.||.+++.+|...
T Consensus 131 ------------~~~-~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 131 ------------LSE-IEEEEEL--------------EGEEVLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred ------------HHH-HHHhhhh--------------ccCceEEEEecccCCHHHHHHHHHHH
Confidence 000 1111111 23589999999999999999988764
No 99
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.68 E-value=2.4e-16 Score=162.98 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=103.9
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|++++|||||+++|++..+.....++++.++....+..... .....++||||||+..|..++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~~~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQS------------DEDVRLMLWDTAGQEEFDAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCC------------CCEEEEEEeeCCchHHHHHhHH
Confidence 5999999999999999999987665444444443332222211100 0012489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHHH-HHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 790 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l~-~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l 790 (1222)
..++.+|++|+|+|+++....+....|. .+.. .++|+|||+||+|+... ..+. .
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~v~-----------------~ 126 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ------AVIT-----------------N 126 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc------cCCC-----------------H
Confidence 9999999999999998754333333332 2222 37999999999998631 0000 0
Q ss_pred HHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 791 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 791 ~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
..+....... .++++++||++|.|+.+++.+|..
T Consensus 127 ~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 127 EEAEALAKRL---------------QLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence 0111111111 148999999999999999988864
No 100
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.68 E-value=2e-16 Score=166.40 Aligned_cols=154 Identities=23% Similarity=0.271 Sum_probs=100.7
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
+.+.|+|+|++++|||||+++|++..+.. ++.++|.....+ .+....+.||||||+..|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~--------------~~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTL--------------EYEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEE--------------EECCEEEEEEECCCCHHHHH
Confidence 45679999999999999999998764321 122222111100 01113489999999999998
Q ss_pred HHHhhcccCceeEEEecccCCCCh-hHHHHHHHH----HhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~-qT~e~l~~l----k~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
++..++..+|++|||+|+.+.... ....++..+ ...++|+|||+||+|+.... .
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------~--------------- 132 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL------S--------------- 132 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC------C---------------
Confidence 888899999999999999875221 112222222 22578999999999986310 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
...+...+....+ ....++++++||++|.||.+++.+|+
T Consensus 133 ----~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 133 ----EEEIREALELDKI----------SSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ----HHHHHHHhCcccc----------CCCceEEEeccCCCCcCHHHHHHHHh
Confidence 0111111111111 02346999999999999999998875
No 101
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.68 E-value=3.2e-16 Score=163.55 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=104.7
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|++++|||||+++|++..+.......++.++....+.+... ...+.||||||+..|..++.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~D~~g~~~~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDK--------------LVTLQIWDTAGQERFQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCE--------------EEEEEEEeCCChHHHHhHHH
Confidence 5999999999999999999987665443333332222222222110 12378999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHHH--HHHh------cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESLN--LLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l~--~lk~------~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
.+++.+|++|+|+|+.+....+....|. ++.. .++|+++|+||+|+... ....
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~~-------------- 128 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK-----RQVS-------------- 128 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc-----cccC--------------
Confidence 9999999999999998754322222221 1221 27899999999999620 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
...+...+... +.++++++||.+|.|+..++.+|...+.
T Consensus 129 ----~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 129 ----TKKAQQWCQSN--------------GNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred ----HHHHHHHHHHc--------------CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00111111111 2368999999999999999999886543
No 102
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.68 E-value=1.3e-16 Score=165.93 Aligned_cols=154 Identities=19% Similarity=0.261 Sum_probs=97.4
Q ss_pred EEEEccCCCCchhhhhhhcCCccc------ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQ------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 708 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~------~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F 708 (1222)
|+|+|++|+|||||+++|++.... .....++...++ .+.+ ....+.|||||||..|
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~----------------~~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV----------------GNARLKFWDLGGQESL 63 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE----------------CCEEEEEEECCCChhh
Confidence 899999999999999999753221 000111111111 1111 1235999999999999
Q ss_pred HHHHHhhcccCceeEEEecccCCCCh-hHHHHHHHHH----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHH
Q 000923 709 TNLRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 783 (1222)
Q Consensus 709 ~~~~~rg~~~aD~aILVVDa~dGv~~-qT~e~l~~lk----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~ 783 (1222)
..++...+..+|++|||||+.+.-.. ....++..+. ..++|+||++||+|+...+ ..
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------~~------------ 125 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL------SV------------ 125 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC------CH------------
Confidence 99999999999999999999764211 1222222222 2479999999999986311 00
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 784 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 784 ~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
..+...+... +. . .....++++++||++|.||.+++.+|..
T Consensus 126 -------~~~~~~~~~~-~~--~-----~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 126 -------EEIKEVFQDK-AE--E-----IGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred -------HHHHHHhccc-cc--c-----ccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 0111111110 00 0 0013469999999999999999988863
No 103
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.68 E-value=2.3e-16 Score=163.31 Aligned_cols=156 Identities=15% Similarity=0.085 Sum_probs=101.2
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|++++|||||+++|++..+.....+.+...+ ...+.+.. ....+.|||||||..|..++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDG--------------QWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECC--------------EEEEEEEEECCCCcchhHHH
Confidence 4699999999999999999987654332222211111 11111110 01248899999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHH-HHHHHH----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
...+..+|++|||+|+++....+... ++..+. ..++|+|||+||+|+...+. +
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~------~---------------- 125 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK------V---------------- 125 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce------e----------------
Confidence 99999999999999998743322221 222222 24789999999999863110 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
........+... .++++++||++|.||.++++.|+..+
T Consensus 126 -~~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 126 -SREEGQELARKL---------------KIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred -cHHHHHHHHHHc---------------CCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 000111111111 14899999999999999999987654
No 104
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=7.2e-16 Score=187.41 Aligned_cols=161 Identities=19% Similarity=0.227 Sum_probs=115.5
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc----
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 705 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh---- 705 (1222)
+.+.|+|+|++|+|||||+++|++..+ ......|+|.+.....+.+.. ..+.||||||+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~----------------~~~~l~DTaG~~~~~ 273 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG----------------KTWRFVDTAGLRRRV 273 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC----------------EEEEEEECCCccccc
Confidence 346799999999999999999998754 234556777655433333321 34789999994
Q ss_pred ------hhhHHHHH-hhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHh
Q 000923 706 ------ESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 778 (1222)
Q Consensus 706 ------e~F~~~~~-rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q 778 (1222)
+.|..++. ..+..+|++|||+|+++++..+....+..+...++|+|||+||+|+... ...
T Consensus 274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~-------~~~------ 340 (472)
T PRK03003 274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE-------DRR------ 340 (472)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh-------hHH------
Confidence 44555543 4578899999999999999999988888888889999999999999621 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 779 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 779 ~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
..+ ...+...+.. -..+|++++||++|.||.+|+..|..++.
T Consensus 341 -----~~~---~~~i~~~l~~--------------~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 341 -----YYL---EREIDRELAQ--------------VPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred -----HHH---HHHHHHhccc--------------CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000 0111111110 12358999999999999999999987664
No 105
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.67 E-value=4e-16 Score=161.96 Aligned_cols=160 Identities=19% Similarity=0.281 Sum_probs=107.1
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh--
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 708 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F-- 708 (1222)
++.|+|+|++|+|||||+++|++..+. .....++|.......+... ...++||||||+..+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~iiDtpG~~~~~~ 65 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD----------------GKKYTLIDTAGIRRKGK 65 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC----------------CeeEEEEECCCCccccc
Confidence 467999999999999999999876532 2333444433322222221 234899999996432
Q ss_pred --------HHH-HHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 709 --------TNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 709 --------~~~-~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
..+ ....+..+|++|+|+|+.++...+....+..+...+.|+||++||+|+.... ..
T Consensus 66 ~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-----~~--------- 131 (174)
T cd01895 66 VEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-----SK--------- 131 (174)
T ss_pred hhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-----HH---------
Confidence 212 2345678999999999999888888777888887899999999999986310 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 780 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 780 ~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.+..+...+... +. ....++++++||++|.|+..++..+...
T Consensus 132 ---------~~~~~~~~~~~~-~~---------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 132 ---------TMKEFKKEIRRK-LP---------FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ---------HHHHHHHHHHhh-cc---------cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 011111122111 00 0123689999999999999999888653
No 106
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.67 E-value=3.4e-16 Score=162.14 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=105.4
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|++++|||||+++|++..+.......++.+++...+..... ...++||||||+..|..++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNK--------------EVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCe--------------EEEEEEEECCccHHHHHHHH
Confidence 5999999999999999999987765544444444443333322211 12489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHHHh--------cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~--------~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
..+..+|++|||+|+++....+....| ..+.. .+.|+|+|+||+|+.... ...
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~-------------- 129 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR----AVS-------------- 129 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc----ccC--------------
Confidence 999999999999999875333333222 22221 358999999999986210 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 785 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 785 ~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
........... .++++++||++|.||.+++.+|...
T Consensus 130 -----~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 130 -----EDEGRLWAESK---------------GFKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred -----HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 00011111111 1589999999999999999998754
No 107
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.67 E-value=4.2e-16 Score=161.13 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=108.4
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|++++|||||+++|++..+.......++.++....+.+.... ..+.||||||+..|..++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~D~~G~~~~~~~~~ 67 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKR--------------VKLQIWDTAGQERFRSITS 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEE--------------EEEEEEECCChHHHHHHHH
Confidence 59999999999999999999887655544555544443333332110 2388999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..+..+|++|||+|+.+....+....| ..+.. .++|++||+||+|+...+. .+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----~~------------------- 124 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ----VS------------------- 124 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC----CC-------------------
Confidence 999999999999999875444433323 33322 4689999999999863110 00
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...+....... .++++++||.+|.|+.+++..|...+
T Consensus 125 ~~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 125 REEAEAFAEEH---------------GLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00011111111 14799999999999999999998755
No 108
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=3.7e-16 Score=162.88 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=106.1
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
+.+.|+|+|+.|+|||||+++|+...+......+++.+.....+.+.... ..+.|||||||..|..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~~~~D~~g~~~~~~ 71 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEK--------------IKLQIWDTAGQERFRS 71 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEE--------------EEEEEEECCCcHHHHH
Confidence 34679999999999999999998766554433333333322222222110 2378999999999999
Q ss_pred HHHhhcccCceeEEEecccCCCChhHHHHH----HHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~qT~e~l----~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
++...+..+|++|+|+|+.++...+....| ..+...++|+|+++||+|+... .++..
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~------~~i~~------------- 132 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER------REVSQ------------- 132 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cccCH-------------
Confidence 989999999999999999876443333232 2333347899999999998631 11100
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.+...+... ..++++++||++|.|+.+++..|...
T Consensus 133 -----~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 133 -----QRAEEFSDA--------------QDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred -----HHHHHHHHH--------------cCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 011111111 12589999999999999999998764
No 109
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.1e-16 Score=179.58 Aligned_cols=131 Identities=26% Similarity=0.338 Sum_probs=104.2
Q ss_pred ccCCCCEEEEEccCCCCchhhhhhhcCC------------cc----cccccCceeEeeeeeEeeccccccchhhcccccc
Q 000923 628 ENLRSPICCIMGHVDTGKTKLLDCIRGT------------NV----QEGEAGGITQQIGATYFPAENIRERTRELKANAT 691 (1222)
Q Consensus 628 ~~~R~~~V~IvG~vdsGKTTLl~~L~~~------------~v----~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~ 691 (1222)
.++|+ +.+|.|++||||||.+.|... .+ .....+|||+...+.++-++........+....+
T Consensus 17 ~NiRN--mSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 17 KNIRN--MSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred ccccc--ceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 46787 899999999999999999621 11 2344688998887776655543333333333233
Q ss_pred cccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 692 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 692 ~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
.+.--|++||.|||.+|++.+...++.+|++++|||+.+|+..||...|+++-.-.+.-++++||+|+.
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 333459999999999999999999999999999999999999999999999988888888999999984
No 110
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=5.6e-16 Score=167.33 Aligned_cols=160 Identities=19% Similarity=0.122 Sum_probs=106.6
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|.+++|||||+++|++..+.......+..++....+.+... ....|.||||||++.|..++.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~-------------~~~~l~l~Dt~G~~~~~~~~~ 68 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPN-------------TVVRLQLWDIAGQERFGGMTR 68 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCC-------------CEEEEEEEECCCchhhhhhHH
Confidence 5999999999999999999987665443333333332222222100 012389999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHHH-------hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk-------~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
.++..+|++|||+|+++....+....| ..+. ..++|+|||+||+|+...+ ..
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~----~~---------------- 128 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL----AK---------------- 128 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc----cc----------------
Confidence 999999999999999874333322222 2221 2468999999999996210 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
....+...+...+ .++++++||++|.||.+++.+|+..+..
T Consensus 129 ---~~~~~~~~~~~~~--------------~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 129 ---DGEQMDQFCKENG--------------FIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred ---CHHHHHHHHHHcC--------------CceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 0011112222222 2479999999999999999999876643
No 111
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=4.1e-16 Score=162.92 Aligned_cols=157 Identities=17% Similarity=0.102 Sum_probs=105.0
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
++|+|+|.+++|||||+++|++..+......+++.+.....+.+... ...+.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGK--------------KIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCE--------------EEEEEEEeCCchHHHHHHH
Confidence 57999999999999999999987765543333332222222221110 0248999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHH-HHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~-l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
...+..+|++|||+|++++...+.... +..+.. .++|+|||+||+|+.... ...
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~----~~~------------------ 127 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR----VVS------------------ 127 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc----CCC------------------
Confidence 889999999999999987543332222 222332 368999999999996310 000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.......+... .++++++||.+|.||.+++..|+..+
T Consensus 128 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 128 -KEEGEALADEY---------------GIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 24899999999999999999987654
No 112
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.66 E-value=4.9e-16 Score=160.69 Aligned_cols=151 Identities=26% Similarity=0.247 Sum_probs=98.6
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHh
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 714 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~r 714 (1222)
|+|+|++++|||||+++|+...+... .+.+...+ ..+. +....+.||||||+..|..++..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~~-~~t~~~~~--~~~~----------------~~~~~~~i~Dt~G~~~~~~~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTT-IPTIGFNV--ETVT----------------YKNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcCc-CCccCcCe--EEEE----------------ECCEEEEEEECCCCHHHHHHHHH
Confidence 89999999999999999976554321 11111111 1111 11234899999999999999999
Q ss_pred hcccCceeEEEecccCCCChh-HHHHHH-HHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 715 GSGLCDIAILVVDIMHGLEPQ-TIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 715 g~~~aD~aILVVDa~dGv~~q-T~e~l~-~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
++..+|++|+|||+++..... ..+.|. ++.. .++|+|||+||+|+...+ .
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-------~------------------ 117 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-------S------------------ 117 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-------C------------------
Confidence 999999999999998743221 223333 2332 378999999999986321 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
...+...+ ++.. .....++++++||++|.||.+++++|++
T Consensus 118 ~~~i~~~~---~~~~-------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 118 EAEISEKL---GLSE-------LKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHh---Cccc-------cCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 01111111 1110 0012358999999999999999998863
No 113
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.66 E-value=5.1e-16 Score=162.45 Aligned_cols=157 Identities=21% Similarity=0.155 Sum_probs=105.5
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|++|+|||||+++|++..+.......++.++....+..... ...++||||||+..|..++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK--------------QIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 46999999999999999999987665443333333332222222211 1248999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHH-HHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~-l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
.+.+..+|++|||+|+++....+.... +..++. .++|+|||+||+|+.... ...
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~----~~~------------------ 128 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR----EVS------------------ 128 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc----CCC------------------
Confidence 999999999999999986443333322 233333 368999999999986210 000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...+...+... .++++++||++|.||.+++..+...+
T Consensus 129 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 129 -YEEGEAFAKEH---------------GLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 24799999999999999998887654
No 114
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.66 E-value=9.9e-16 Score=177.43 Aligned_cols=163 Identities=23% Similarity=0.339 Sum_probs=124.2
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCc-ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCC-----
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----- 704 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~-v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPG----- 704 (1222)
.+..|+|+|.||+|||||+|+|++.. +..+...|+|.+.-...+.++. ..+.||||.|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~----------------~~~~liDTAGiRrk~ 240 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG----------------RKYVLIDTAGIRRKG 240 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC----------------eEEEEEECCCCCccc
Confidence 45679999999999999999999865 5566778889887766666544 4499999999
Q ss_pred -----chhhHHH-HHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHh
Q 000923 705 -----HESFTNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 778 (1222)
Q Consensus 705 -----he~F~~~-~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q 778 (1222)
++.|+.. +...+..+|+++||+|+..|+..|....+.++...+.++|||+||+|++..+ ..
T Consensus 241 ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~-----~~-------- 307 (444)
T COG1160 241 KITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEED-----EA-------- 307 (444)
T ss_pred ccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCch-----hh--------
Confidence 4455444 3466788999999999999999999999999999999999999999997420 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 779 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 779 ~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
....+...+. ..|. +-.+.|++++||++|.||..|+..+...+.
T Consensus 308 ---~~~~~k~~i~---~~l~--------------~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 308 ---TMEEFKKKLR---RKLP--------------FLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ---HHHHHHHHHH---HHhc--------------cccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 1111111111 1121 124569999999999999999998876553
No 115
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.66 E-value=2.8e-16 Score=161.42 Aligned_cols=147 Identities=26% Similarity=0.303 Sum_probs=102.9
Q ss_pred EEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH------
Q 000923 637 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN------ 710 (1222)
Q Consensus 637 IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~------ 710 (1222)
|+|++|+|||||+++|++..+..+...|+|.+.....+.+.. ..+.||||||+..|..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG----------------KEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC----------------eEEEEEECCCccccCCCChhHH
Confidence 589999999999999988765556667777665444443322 2489999999987754
Q ss_pred HHHhhcc--cCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 711 LRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 711 ~~~rg~~--~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
++...+. .+|++|+|+|+.+. .+....+..+...++|+|+|+||+|+.... .+. .
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~------~~~---------------~ 121 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKR------GIK---------------I 121 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccc------cch---------------h
Confidence 3444453 89999999999863 333445566677899999999999996310 000 0
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
... .+... -.++++++||.+|.|+..++..|..+
T Consensus 122 ~~~----~~~~~--------------~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 122 DLD----KLSEL--------------LGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred hHH----HHHHh--------------hCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 000 11110 01489999999999999999888764
No 116
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=3.9e-16 Score=189.69 Aligned_cols=153 Identities=26% Similarity=0.343 Sum_probs=113.5
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCch---
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE--- 706 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe--- 706 (1222)
+.|+|+|+|++|+|||||+++|++..+. .....|+|.+.....+.+. ...+.||||||+.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~----------------~~~~~l~DT~G~~~~~ 100 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN----------------GRRFTVVDTGGWEPDA 100 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC----------------CcEEEEEeCCCcCCcc
Confidence 4478999999999999999999986542 3456677766544433332 2348999999975
Q ss_pred -----hhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHH
Q 000923 707 -----SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 781 (1222)
Q Consensus 707 -----~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~ 781 (1222)
.|...+..++..||++|||||+.++.+.....++..++..++|+|+|+||+|+... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~-----~~------------ 163 (472)
T PRK03003 101 KGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERG-----EA------------ 163 (472)
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCcc-----ch------------
Confidence 24455666788999999999999998887777888888889999999999998521 00
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 782 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 782 ~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
. ...+...|+ + .+++|||++|.||.+|++.|+..+
T Consensus 164 ----------~-~~~~~~~g~-----------~---~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 164 ----------D-AAALWSLGL-----------G---EPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred ----------h-hHHHHhcCC-----------C---CeEEEEcCCCCCcHHHHHHHHhhc
Confidence 0 011112232 1 246999999999999999998665
No 117
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.66 E-value=4.5e-16 Score=160.23 Aligned_cols=154 Identities=17% Similarity=0.127 Sum_probs=100.5
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
+.|+|+|.+|+|||||+++|++..+.....+.+.... ...+.... ....+.||||||+..|..++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDG--------------ETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECC--------------EEEEEEEEECCCCcchHHHH
Confidence 3599999999999999999987765433222221111 11111110 01237899999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHH-HHHHHH----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
..++..+|++|+|+|.++....+... ++..+. ..++|+|||+||+|+... ...
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----~~~----------------- 124 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-----TVS----------------- 124 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-----eec-----------------
Confidence 99999999999999998743322222 222222 247899999999998621 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
...+....... .++++++||++|.||.+++.+|+..
T Consensus 125 --~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 125 --SRQGQDLAKSY---------------GIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred --HHHHHHHHHHh---------------CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 00111111111 2489999999999999999988754
No 118
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.66 E-value=6.4e-16 Score=161.16 Aligned_cols=156 Identities=20% Similarity=0.163 Sum_probs=103.3
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|+.++|||||+++|....+.......+..++....+..... ...+.||||||+..|..++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQ--------------KIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 45999999999999999999877665433222222222222211110 1248999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHHH-HHHH---hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk---~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
...++.+|++|||+|+++....+....| ..+. ..++|+|||+||+|+.... .+.
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~------~~~---------------- 126 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR------DVT---------------- 126 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc------CcC----------------
Confidence 9999999999999999875433333333 2222 2467999999999996310 000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
...+....... .++++++||++|.||.+++..++..
T Consensus 127 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 127 -YEEAKQFADEN---------------GLLFLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 00111111111 2489999999999999999888754
No 119
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.66 E-value=6.6e-16 Score=164.34 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=102.9
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
...|+++|++|+|||||+++|+...+... .+.++..+....+... ......|.||||||++.|..+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~-------------~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLG-------------NSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeecc-------------CCCceEEEEEECCCcHhHHHH
Confidence 45699999999999999999987655422 1111111111111110 011134899999999999998
Q ss_pred HHhhcccCceeEEEecccCCCChhHH-----HHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEPQTI-----ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~qT~-----e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
+...+..+|++|+|||+++.-..... +++......++|+|||+||+|+...+ .
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~------~---------------- 126 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL------S---------------- 126 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC------C----------------
Confidence 88889999999999999874222111 11222233579999999999986210 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
...+. .+. +++. + .....++++++||++|.||.+|+.+|...+.
T Consensus 127 ---~~~~~-~~~--~~~~--~----~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 127 ---VSEVE-KLL--ALHE--L----SASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ---HHHHH-HHh--Cccc--c----CCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 00111 111 1100 0 0012367999999999999999999987664
No 120
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.66 E-value=5.7e-16 Score=161.26 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=104.7
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|.+|+|||||+++|++..+......+++.++....+..... ...+.||||||+..|..++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK--------------TIKLQIWDTAGQERFRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHhHHHHH
Confidence 46999999999999999999987665544444443332222222111 0238999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHH-HHHHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
...++.+|++|||+|+++....... .++..+.. .++|+|||+||+|+.... ....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~----~~~~----------------- 127 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR----VVDY----------------- 127 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc----CCCH-----------------
Confidence 9999999999999999874322222 22233332 368999999999986310 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
......... ..++++++||++|.||.+++..|+..+
T Consensus 128 --~~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 128 --SEAQEFADE---------------LGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred --HHHHHHHHH---------------cCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 001111111 125899999999999999999987654
No 121
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.66 E-value=4.1e-16 Score=187.70 Aligned_cols=151 Identities=24% Similarity=0.329 Sum_probs=116.0
Q ss_pred EEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc-------
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------- 705 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh------- 705 (1222)
+|+|+|++|+|||||+++|++.... .....|+|.+.....+.+.. ..++||||||+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~----------------~~~~liDTpG~~~~~~~~ 64 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG----------------REFILIDTGGIEEDDDGL 64 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC----------------eEEEEEECCCCCCcchhH
Confidence 3899999999999999999976642 34456777665544444432 34999999997
Q ss_pred -hhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 706 -ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 706 -e~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
..|...+..++..+|++|+|||+..|+.+...+++..++..++|+|+|+||+|+.... .
T Consensus 65 ~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~-----~--------------- 124 (429)
T TIGR03594 65 DKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED-----A--------------- 124 (429)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc-----c---------------
Confidence 4556667778899999999999999999999999999999999999999999986310 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 785 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 785 ~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
....+...|+ .+++++||.+|.|+.+|++.+..+++
T Consensus 125 --------~~~~~~~lg~--------------~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 125 --------VAAEFYSLGF--------------GEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred --------cHHHHHhcCC--------------CCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 0011222232 36899999999999999999876653
No 122
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.65 E-value=3.9e-16 Score=161.88 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=101.5
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|++|+|||||+++|++..+.....+.++ +.....+.... ....+.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDG--------------EVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECC--------------EEEEEEEEECCCcccchHHHH
Confidence 599999999999999999987665443322221 11111111110 012488999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHH----HhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~l----k~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..+..+|++|||+|+++.........| ..+ ...++|+|||+||+|+...+ .+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~------~~~---------------- 124 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER------VVS---------------- 124 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------eEc----------------
Confidence 999999999999999874332222222 222 12368999999999986311 000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
...+ ..+... ..++++++||++|.||.+|+..|+..+.
T Consensus 125 -~~~~-~~~~~~--------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 125 -TEEG-KELARQ--------------WGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred -HHHH-HHHHHH--------------cCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 0000 111110 0158999999999999999999986553
No 123
>PRK04213 GTP-binding protein; Provisional
Probab=99.65 E-value=9.5e-16 Score=165.18 Aligned_cols=159 Identities=26% Similarity=0.342 Sum_probs=105.3
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc-----
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----- 705 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh----- 705 (1222)
+.+.|+|+|++|+|||||+++|++..+..+...|+|.+.... .+ ..++||||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~--~~------------------~~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHY--DW------------------GDFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEE--ee------------------cceEEEeCCccccccc
Confidence 457799999999999999999998776655555665543211 11 14899999994
Q ss_pred ------hhhHHHHHh----hcccCceeEEEecccCC-----------CChhHHHHHHHHHhcCCceEEEEeeeccccCcc
Q 000923 706 ------ESFTNLRSR----GSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 764 (1222)
Q Consensus 706 ------e~F~~~~~r----g~~~aD~aILVVDa~dG-----------v~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~ 764 (1222)
+.|..++.. ++..++++|+|+|+... ..+++.+++..+...++|+|||+||+|+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-- 145 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN-- 145 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc--
Confidence 445544333 44567899999998642 2234566777777789999999999998621
Q ss_pred cCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 765 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 765 ~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
. . ..+..+...+ ++.. .+. ....+++++||++| ||.+++.+|...+.
T Consensus 146 -----~-~---------------~~~~~~~~~~---~~~~--~~~----~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 146 -----R-D---------------EVLDEIAERL---GLYP--PWR----QWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred -----H-H---------------HHHHHHHHHh---cCCc--ccc----ccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 0 0 0111111111 2110 000 01247999999999 99999999987653
No 124
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.65 E-value=8.3e-16 Score=166.30 Aligned_cols=157 Identities=20% Similarity=0.217 Sum_probs=108.0
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|..++|||||+.+|+...+......+++.++....+.+.+. ...+.||||+|++.|..++.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~--------------~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGK--------------KIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCE--------------EEEEEEEeCCCchhhHHHHH
Confidence 4899999999999999999987776544444444433222322211 12489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.+++.+|++|||+|+++....+....| ..+.. .++|+|||+||+|+...+ .+.
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~------~v~----------------- 124 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR------EIS----------------- 124 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc------ccC-----------------
Confidence 999999999999999985544444333 33332 368999999999985211 000
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
......+... + ..++++.+||++|.||.++|.+|+..+
T Consensus 125 -~~~~~~~a~~-~------------~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 125 -RQQGEKFAQQ-I------------TGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred -HHHHHHHHHh-c------------CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0000111111 0 124799999999999999999988654
No 125
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.65 E-value=8.6e-16 Score=159.03 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=103.2
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|++++|||||+++|++..+.......+...+....+.+.. ....+.||||||+..|..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~--------------~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD--------------TTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEeCCchHHHHHHH
Confidence 4699999999999999999998776542222222112122222221 01238899999999999988
Q ss_pred HhhcccCceeEEEecccCCCCh-hHHHHHHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEP-QTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~-qT~e~l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
...++.+|++|||+|+++.-.. +...++..+.. .++|+||++||+|+.... ..+
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~------------------ 125 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR----QVS------------------ 125 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC----cCC------------------
Confidence 8889999999999999864221 12223333333 358999999999986310 000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...+...+... .++++++||++|.|+.+++.+|...+
T Consensus 126 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 126 -TEEAQEYADEN---------------GLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 00111111111 15799999999999999999998754
No 126
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=3.2e-16 Score=186.89 Aligned_cols=116 Identities=34% Similarity=0.506 Sum_probs=97.6
Q ss_pred cccCCCCEEEEEccCCCCchhhhhhhcCCcc----------------cccccCceeEeeeeeEeeccccccchhhccccc
Q 000923 627 EENLRSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANA 690 (1222)
Q Consensus 627 ~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~v----------------~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~ 690 (1222)
...+|+ |||+.|+|||||||.+.|+..+- .+..++|||...++.+....
T Consensus 6 ~~~irn--~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~------------- 70 (887)
T KOG0467|consen 6 SEGIRN--ICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHK------------- 70 (887)
T ss_pred CCceeE--EEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccC-------------
Confidence 345677 99999999999999999975431 23345777776666553222
Q ss_pred ccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 691 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 691 ~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
.+.|+|||+|||.+|...+...++.||+++++||+..|+.+||...++++-..+...|+||||||+.
T Consensus 71 ---~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 71 ---DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred ---ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhH
Confidence 2459999999999999999999999999999999999999999999999999999999999999975
No 127
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.65 E-value=6.8e-16 Score=160.92 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=95.9
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh------
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 707 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~------ 707 (1222)
.|+|+|++|+|||||+++|.+.....+...+.|.......+.+.. ...++||||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~---------------~~~~~l~DtpG~~~~~~~~~ 66 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD---------------GRSFVVADIPGLIEGASEGK 66 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC---------------CCeEEEEecCcccCcccccC
Confidence 389999999999999999986554333323333322111111111 02599999999742
Q ss_pred -hHHHHHhhcccCceeEEEecccCC-CChhHHHH-HHHHHh-----cCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 708 -FTNLRSRGSGLCDIAILVVDIMHG-LEPQTIES-LNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 708 -F~~~~~rg~~~aD~aILVVDa~dG-v~~qT~e~-l~~lk~-----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
+.....+.+..||++|+|+|+.++ -..+.... +..+.. .++|+|+|+||+|+... ..+
T Consensus 67 ~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------~~~-------- 132 (170)
T cd01898 67 GLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE------EEL-------- 132 (170)
T ss_pred CchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc------hhh--------
Confidence 233344556679999999999886 23333332 233332 36899999999998631 100
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 780 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 780 ~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
......+.... ..++++++||++|.|+.+++++|..+
T Consensus 133 -----------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 133 -----------FELLKELLKEL-------------WGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred -----------HHHHHHHHhhC-------------CCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 00111111110 13579999999999999999998754
No 128
>PTZ00369 Ras-like protein; Provisional
Probab=99.65 E-value=6.6e-16 Score=165.12 Aligned_cols=162 Identities=15% Similarity=0.071 Sum_probs=105.2
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
.+.|+|+|++|+|||||+.+|++..+.....+.+...+. ..+.... ....+.||||||+..|..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDE--------------ETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEECC--------------EEEEEEEEeCCCCccchhh
Confidence 467999999999999999999877654332222211110 0001110 0123889999999999999
Q ss_pred HHhhcccCceeEEEecccCCCChhHHH-HHHHHH----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
+..++..+|++|||+|+++..+..... ++..+. ..++|+|||+||+|+...+. +.
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~------i~-------------- 129 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQ------VS-------------- 129 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc------cC--------------
Confidence 999999999999999998754322222 222222 23789999999999863110 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMV 846 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~ 846 (1222)
........... .++++++||++|.||.+++.+|+..+...+.
T Consensus 130 ---~~~~~~~~~~~---------------~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 130 ---TGEGQELAKSF---------------GIPFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred ---HHHHHHHHHHh---------------CCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 00000011111 1489999999999999999999877655433
No 129
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.65 E-value=1.2e-15 Score=159.07 Aligned_cols=157 Identities=17% Similarity=0.107 Sum_probs=102.6
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|.+|+|||||+++|++..+.......++.++....+.... ....+.||||||+..|..++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRND--------------KRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCChHHHHHHH
Confidence 3699999999999999999987766433222222222111111110 01248999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHH-HHHHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
...++.+|++|+|+|.++....+.. .++..+.. ...|+|||+||+|+.... ...
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~----~~~------------------ 125 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER----VVS------------------ 125 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc----ccC------------------
Confidence 9999999999999999764332222 22333433 357999999999996310 000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
........... .++++++||++|.||.+|+++|+..+
T Consensus 126 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 126 -SERGRQLADQL---------------GFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 00011111111 14799999999999999999987654
No 130
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.64 E-value=7.8e-16 Score=158.98 Aligned_cols=152 Identities=22% Similarity=0.295 Sum_probs=98.1
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHh
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 714 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~r 714 (1222)
|+|+|.+++|||||+++|++...... .++..+|.....+. +....++||||||+..|..++..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~---~~~~t~g~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~~~~~ 64 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGFNVESFE--------------KGNLSFTAFDMSGQGKYRGLWEH 64 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcc---eecCccccceEEEE--------------ECCEEEEEEECCCCHhhHHHHHH
Confidence 89999999999999999987542111 12222221111110 11134899999999999999999
Q ss_pred hcccCceeEEEecccCCCChh-HHHHHHHH-H-----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 715 GSGLCDIAILVVDIMHGLEPQ-TIESLNLL-K-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 715 g~~~aD~aILVVDa~dGv~~q-T~e~l~~l-k-----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
++..+|++|||||+++..... ....+..+ . ..++|++||+||+|+... ..
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~------~~----------------- 121 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA------LT----------------- 121 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC------CC-----------------
Confidence 999999999999998754321 12222222 1 247999999999998631 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
...+...+ ++. .+ ....++++++||++|.||.+++.+|.
T Consensus 122 --~~~~~~~l---~~~--~~-----~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 122 --AVKITQLL---GLE--NI-----KDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred --HHHHHHHh---CCc--cc-----cCceEEEEEeeCCCCCchHHHHHHHh
Confidence 00111111 110 00 01235799999999999999999885
No 131
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.64 E-value=1.3e-15 Score=160.72 Aligned_cols=167 Identities=15% Similarity=0.088 Sum_probs=106.2
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|..++|||||+++|+...+......+++.++....+.+...... ... ..-....+.||||||+..|..++
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPG--GTL--GRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCcccc--ccc--cCCCEEEEEEEeCCChHHHHHHH
Confidence 56999999999999999999877665544444443333222222110000 000 00001248999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHH-HHHHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~-l~~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
...++.+|++|||+|+++....+.... +..+.. .+.|+|||+||+|+.... ...
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~----~v~----------------- 139 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR----QVS----------------- 139 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcC----ccC-----------------
Confidence 999999999999999987433222222 222322 368999999999986310 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...+....... .++++++||++|.|+.+++..|+..+
T Consensus 140 --~~~~~~~~~~~---------------~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 140 --EEQAKALADKY---------------GIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred --HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 14899999999999999999987644
No 132
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.64 E-value=2e-15 Score=165.30 Aligned_cols=190 Identities=17% Similarity=0.196 Sum_probs=111.0
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|.+++|||||+.+|+...+... .. .++..+.... +....|.||||||+..|..++.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~~-~~----Tig~~~~~~~--------------~~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDT-VS----TVGGAFYLKQ--------------WGPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCC-CC----ccceEEEEEE--------------eeEEEEEEEeCCCcccchhhHH
Confidence 589999999999999999998776431 22 2222111110 0112489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHH-HHHHHHh---cCCceEEEEeeeccccCcccCCCchHHH-HHHHhhHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVK-AIKQQNTDVQNEFNM 788 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~-~l~~q~~~~~~~~~~ 788 (1222)
.+++.+|++|||+|+++........ +|..+.. .++|+|||+||+|+...|.......-.. .+.... ... .
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~---~r~--v 137 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPED---QRQ--V 137 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccc---ccc--C
Confidence 9999999999999998754333332 2333332 3689999999999975322110000000 000000 000 0
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHh
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK 848 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~ 848 (1222)
..........+.+.. ..++++......++++++||++|.||.+++..|+..+...+...
T Consensus 138 ~~~e~~~~a~~~~~~-~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~ 196 (220)
T cd04126 138 TLEDAKAFYKRINKY-KMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQ 196 (220)
T ss_pred CHHHHHHHHHHhCcc-ccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 001111111111100 01111111123468999999999999999999988776555443
No 133
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.64 E-value=1.2e-15 Score=160.71 Aligned_cols=157 Identities=17% Similarity=0.110 Sum_probs=104.9
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
...|+|+|..++|||||+.+|+...+.......+...+ ...+...+. ...++||||||+..|..+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~l 66 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNE--------------PALLDILDTAGQAEFTAM 66 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCE--------------EEEEEEEeCCCchhhHHH
Confidence 45799999999999999999987766432222221111 011111110 123899999999999999
Q ss_pred HHhhcccCceeEEEecccCCCChhHHHHH-HHHH----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
+..++..+|++|||+|+++....++...| ..+. ..++|+|||+||+|+...+ .+.
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~------~v~-------------- 126 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR------QVT-------------- 126 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC------ccC--------------
Confidence 99999999999999999987665554432 2232 2468999999999985210 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
........... .++++++||++|.||.+++.+|+..+
T Consensus 127 ---~~~~~~~a~~~---------------~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 127 ---TEEGRNLAREF---------------NCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ---HHHHHHHHHHh---------------CCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 00011111111 25899999999999999999987644
No 134
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.64 E-value=1.1e-15 Score=158.08 Aligned_cols=154 Identities=20% Similarity=0.197 Sum_probs=101.9
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|++++|||||+++|++..+.....+.++.+.....+.+... ...+.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGK--------------KVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCE--------------EEEEEEEECCCchhhhhhhH
Confidence 5999999999999999999877654322222222221111111110 12389999999999999988
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHHH----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..++.+|++|+|+|+++....+....| ..+. ..++|++||+||+|+... ..+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~-----~~~~----------------- 125 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR-----EVTR----------------- 125 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc-----ccCH-----------------
Confidence 899999999999999874433333222 2222 347899999999999621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
..+...... ..++++++||++|.|+.+++..+...
T Consensus 126 --~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 126 --EEGLKFARK---------------HNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred --HHHHHHHHH---------------cCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 011111111 12589999999999999999988753
No 135
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.64 E-value=9.3e-16 Score=160.53 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=103.5
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|..|+|||||+++|+...+.......+..++....+.... ....+.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNR--------------GKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCCChhhccccH
Confidence 599999999999999999986655433333332222222222111 012489999999999988888
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHHHhc--CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 790 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~~--~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l 790 (1222)
..+..+|++|||+|++++...+....| ..+... ++|+|||+||+|+... ...
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~-------~~~------------------ 122 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDR-------KVK------------------ 122 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccc-------cCC------------------
Confidence 889999999999999876544433322 333322 6999999999998620 000
Q ss_pred HHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 791 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 791 ~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.... .+... ..++++++||++|.||.+++.+|+..+
T Consensus 123 ~~~~-~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 123 AKQI-TFHRK--------------KNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred HHHH-HHHHH--------------cCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 0000 11111 235899999999999999999998654
No 136
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.64 E-value=1.7e-15 Score=158.36 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=102.7
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|++++|||||+++|+...+.......++.+.....+..... ...+.||||||+..|..++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~i~D~~G~~~~~~~~ 71 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH--------------FVTLQIWDTAGQERFRSLR 71 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCe--------------EEEEEEEeCCChHHHHHhH
Confidence 45999999999999999999877665433333332221111111110 1238899999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHHH-HHHH-------hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk-------~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
...++.+|++|||+|.++....+....| ..+. ..++|+|||+||+|+... ...
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~-------------- 132 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-----QVS-------------- 132 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc-----ccC--------------
Confidence 9999999999999999875433333222 2111 135899999999998520 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 785 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 785 ~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
...+...+... ...+++++||++|.||.+++..++.
T Consensus 133 -----~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 133 -----TEEAQAWCREN--------------GDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred -----HHHHHHHHHHC--------------CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 01111111111 1248999999999999999998875
No 137
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.64 E-value=1.4e-15 Score=166.62 Aligned_cols=158 Identities=20% Similarity=0.160 Sum_probs=107.0
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~ 709 (1222)
.....|+|+|..|+|||||+.+++...+.......+...+....+..... ...+.||||||+..|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG--------------KIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCe--------------EEEEEEEECCCchhhh
Confidence 56678999999999999999999876665433333322222222211110 1248999999999999
Q ss_pred HHHHhhcccCceeEEEecccCCCChhHHHHH-HHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
.++..+++.+|++|||+|.++....+....| ..+.. .++|+|||+||+|+... .+.
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-------~v~-------------- 135 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-------QVK-------------- 135 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhc-------cCC--------------
Confidence 9999999999999999999986544443333 33332 36899999999998520 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...+ .+... ..++++++||++|.||.++|.+|+..+
T Consensus 136 ---~~~~--~~~~~--------------~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 136 ---AKQV--TFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred ---HHHH--HHHHh--------------cCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 0001 11111 125899999999999999999987654
No 138
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.64 E-value=1.3e-15 Score=158.19 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=104.2
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|.+++|||||+++|++..+.......++.++....+..... ...+.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGK--------------TIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE--------------EEEEEEEeCCChHHHHHHH
Confidence 46999999999999999999987765444344443332222222211 0238899999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHH-HHHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
...+..++++|||+|+.+....+... ++..+.. .++|++||+||+|+... +...
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~----~~~~------------------ 127 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL----RAVP------------------ 127 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----ccCC------------------
Confidence 99999999999999998633322222 2233332 25899999999998631 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
...+...+... .++++++||++|.||..+++.|...
T Consensus 128 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 128 -TEEAKAFAEKN---------------GLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 00111111111 2589999999999999999998754
No 139
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=1.4e-15 Score=162.77 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=103.8
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccc-cCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e-~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
.|+|+|.+|+|||||+++|+...+..+. ..+++.++....+..... ...++||||||+..|..++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGV--------------KVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCE--------------EEEEEEEeCCCcHHHHHhh
Confidence 5999999999999999999877764322 222222222111211110 1248999999999999998
Q ss_pred HhhcccCceeEEEecccCCCChhH-HHHHHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT-~e~l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
...+..+|++|||+|+++....+. ..++..+.. .++|+|||+||+|+... ..+.
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~------~~~~---------------- 125 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE------RVVK---------------- 125 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc------cccC----------------
Confidence 889999999999999987433222 222333333 36899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
........... .++++++||++|.||.+|+.+|...+..
T Consensus 126 -~~~~~~l~~~~---------------~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 126 -REDGERLAKEY---------------GVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred -HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 00000111111 1489999999999999999999876643
No 140
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.64 E-value=9.3e-16 Score=158.58 Aligned_cols=155 Identities=19% Similarity=0.106 Sum_probs=99.7
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
+.|+|+|.+|+|||||+++|+...+.....+.+. ......+.... ....+.||||||++.|..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDG--------------QQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECC--------------EEEEEEEEECCCccccchHH
Confidence 4699999999999999999987655432222211 11001111110 01237899999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHH-HHHHHHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
..+++.+|++|||+|+++....... .++..+.. .++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------- 125 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE------RVVS--------------- 125 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------ceec---------------
Confidence 9999999999999999874322222 22233322 36899999999998631 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
... ...+.. .++ ++++++||++|.||.+++.+|+..
T Consensus 126 --~~~-~~~~~~------------~~~--~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 126 --REE-GQALAR------------QWG--CPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred --HHH-HHHHHH------------HcC--CeEEEecCCCCCCHHHHHHHHHHh
Confidence 000 011111 011 589999999999999999988753
No 141
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.64 E-value=1.2e-15 Score=158.63 Aligned_cols=156 Identities=19% Similarity=0.100 Sum_probs=101.0
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
++|+|+|.+|+|||||+++|+...+.....+.+...+ ...+.... ....+.||||||+..|..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDG--------------QQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECC--------------EEEEEEEEECCCcccchhHH
Confidence 4699999999999999999986654332222221111 11111110 01237899999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHH-HHHHHHH----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
..++..+|++|||+|.++....+.. .++..+. ..++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------- 125 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE------RVVG--------------- 125 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc------cEEc---------------
Confidence 9999999999999998764332222 2223222 246899999999999631 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
... ...+... -.++++++||++|.||.+++.+|...+
T Consensus 126 --~~~-~~~~~~~--------------~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 126 --KEQ-GQNLARQ--------------WGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred --HHH-HHHHHHH--------------hCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 000 0111110 014899999999999999999987644
No 142
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=3.1e-15 Score=159.15 Aligned_cols=164 Identities=19% Similarity=0.173 Sum_probs=105.5
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|+.++|||||+++|++..+.....+.+..++... +..... ....+.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~-------------~~~~l~i~Dt~G~~~~~~~~~ 67 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNG-------------KIIELALWDTAGQEEYDRLRP 67 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCC-------------cEEEEEEEECCCchhHHHHHH
Confidence 599999999999999999998776544333332222111 111000 012389999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHH--HHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e--~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..+..+|++|||+|+++....+... ++..+.. .++|+|||+||+|+........ .+ .
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~v-----------------~ 128 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDR--KV-----------------T 128 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccC--Cc-----------------C
Confidence 8999999999999998754433332 2222332 3689999999999863100000 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 844 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~ 844 (1222)
...........+ ..+++++||++|.||.+++..+...+...
T Consensus 129 ~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 129 PAQAESVAKKQG--------------AFAYLECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred HHHHHHHHHHcC--------------CcEEEEccCCCCCCHHHHHHHHHHHHHhh
Confidence 001111111111 23799999999999999999988766443
No 143
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.63 E-value=9.7e-16 Score=158.08 Aligned_cols=151 Identities=23% Similarity=0.270 Sum_probs=99.5
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHh
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 714 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~r 714 (1222)
|+|+|++|+|||||+++|++..+... .. |..+....+.+ ....+.||||||+..|..++..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~~-~~--t~~~~~~~~~~----------------~~~~~~i~D~~G~~~~~~~~~~ 62 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTT-IP--TIGFNVETVEY----------------KNVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-CC--CcCcceEEEEE----------------CCEEEEEEECCCChhhHHHHHH
Confidence 89999999999999999987763211 11 11111111111 1234999999999999988888
Q ss_pred hcccCceeEEEecccCCCC-hhHHHHHHHH----HhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 715 GSGLCDIAILVVDIMHGLE-PQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 715 g~~~aD~aILVVDa~dGv~-~qT~e~l~~l----k~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.+..+|++|+|+|+.++-. .....++..+ ...+.|+|||+||+|+.... .
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------~------------------- 117 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL------S------------------- 117 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc------C-------------------
Confidence 8999999999999987521 1222333322 23478999999999986310 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
...+...+..... ....++++++||++|.|+.+++..|..
T Consensus 118 ~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 118 VSELIEKLGLEKI----------LGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHhhChhhc----------cCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 0111111111100 123579999999999999999988763
No 144
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.63 E-value=1.6e-15 Score=163.69 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=105.3
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
.+.|+|+|+.|+|||||+++|++..+......+++.++....+.+.+. ...+.||||||+..|..+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~l~D~~G~~~~~~~ 71 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE--------------RVKLQIWDTAGQERFRTI 71 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCE--------------EEEEEEEeCCCchhHHHH
Confidence 356999999999999999999877664433333332222222221110 023889999999999999
Q ss_pred HHhhcccCceeEEEecccCCCChhHH-HHHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
+...+..+|++|||+|+++....+.. .++..+.. ..+|+|||+||+|+... ..+.
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~------~~~~---------------- 129 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER------KVVE---------------- 129 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc------cccC----------------
Confidence 99999999999999999875333322 23333333 25899999999998631 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.......+... .++++++||++|.||.+|+.+|...+
T Consensus 130 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 130 -TEDAYKFAGQM---------------GISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 00011111111 15899999999999999999998755
No 145
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.63 E-value=1.5e-15 Score=158.27 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=101.4
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|++|+|||||+++|++..+.......+.... ...+... .....+.||||||+..|..++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~--------------~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCS--------------KNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEEC--------------CEEEEEEEEECCCCCcchHHH
Confidence 4599999999999999999987766433222111111 0001000 111348999999999999998
Q ss_pred HhhcccCceeEEEecccCCCChhH-HHHHHHHHh------cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT-~e~l~~lk~------~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
..++..+|++|||+|.++...... ..++..++. .++|+|||+||+|+... ..+..
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------~~v~~------------ 128 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK------REVSS------------ 128 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc------CeecH------------
Confidence 888999999999999987554332 223333332 46899999999998621 11000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.... .+.. . ..++++++||++|.||.+++.+|+.+
T Consensus 129 -----~~~~-~~~~-~-------------~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 129 -----NEGA-ACAT-E-------------WNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred -----HHHH-HHHH-H-------------hCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 0000 0100 0 12478999999999999999998754
No 146
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.63 E-value=1.6e-15 Score=156.66 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=98.3
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHh
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 714 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~r 714 (1222)
|+|+|.+|+|||||+++|++..+... ..++...+ ..+... ....+.||||||+..|..++..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~---------------~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE---------------KHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC---------------CceEEEEEECCCCHhHHHHHHH
Confidence 89999999999999999987765421 11111111 111100 0134999999999999998888
Q ss_pred hcccCceeEEEecccCCCChh-HHHHHH-HHH---hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 715 GSGLCDIAILVVDIMHGLEPQ-TIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 715 g~~~aD~aILVVDa~dGv~~q-T~e~l~-~lk---~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.+..+|++|||+|+.+..... ....+. +++ ..++|++||+||+|+...+ +
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~------------------- 118 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------T------------------- 118 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------C-------------------
Confidence 899999999999998753211 111222 222 2478999999999986211 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
...+...+....+. ....++++++||++|.||.+++.+|..
T Consensus 119 ~~~i~~~~~~~~~~---------~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 119 AEEITRRFKLKKYC---------SDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHcCCcccC---------CCCcEEEEecccccCCChHHHHHHHhc
Confidence 01111111100110 012468999999999999999998864
No 147
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.63 E-value=2.7e-15 Score=158.21 Aligned_cols=153 Identities=25% Similarity=0.258 Sum_probs=99.9
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+++|++++|||||+.+|+...+.. . ...++.....+. +....+.||||||+..|..++
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~-~----~~t~~~~~~~~~--------------~~~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH-T----SPTIGSNVEEIV--------------YKNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC-c----CCccccceEEEE--------------ECCeEEEEEECCCCHHHHHHH
Confidence 569999999999999999998665432 1 111221111110 112349999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChh-HHHHH-HHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQ-TIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~q-T~e~l-~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
..++..+|++|||+|+++..... ....| .++.. .++|++|++||+|+...+ +
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~----------------- 133 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------T----------------- 133 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------C-----------------
Confidence 99999999999999998753211 12222 23322 358999999999986311 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
...+...+....+. ...++++++||++|.||.+++.+|..
T Consensus 134 --~~~i~~~l~~~~~~----------~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 134 --PAEISESLGLTSIR----------DHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred --HHHHHHHhCccccc----------CCceEEEecccCCCCCHHHHHHHHhc
Confidence 01111112100000 12368999999999999999998853
No 148
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.63 E-value=1.5e-15 Score=153.94 Aligned_cols=151 Identities=23% Similarity=0.272 Sum_probs=99.8
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
++|+|+|++|+|||||+++|+...+......+++.+.....+...... ..+.|||||||..|..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~D~~G~~~~~~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKT--------------YKFNLLDTAGQEDYRAIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEE--------------EEEEEEECCCcccchHHH
Confidence 469999999999999999999887665656667766655444332210 238899999999997766
Q ss_pred HhhcccCceeEEEecc-------cCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 713 SRGSGLCDIAILVVDI-------MHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa-------~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
......++.+++++|. .++...+....+..+.. ++|++|++||+|+... .+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-------~~~------------- 126 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA-------KLK------------- 126 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc-------hhh-------------
Confidence 5555555555555544 44333444444444433 8899999999999631 010
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 837 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i 837 (1222)
......+... ...+++++||.+|.|+.+++.+|
T Consensus 127 -----~~~~~~~~~~--------------~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 127 -----THVAFLFAKL--------------NGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred -----HHHHHHHhhc--------------cCCceEEeecCCCCCHHHHHHHh
Confidence 1111112111 22479999999999999998876
No 149
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.62 E-value=2.8e-15 Score=157.23 Aligned_cols=159 Identities=15% Similarity=0.143 Sum_probs=105.0
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH-
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 709 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~- 709 (1222)
|...|+|+|++|+|||||+++|+...+.......++.++....+.+... ...+.||||||+..|.
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGE--------------RIKVQLWDTAGQERFRK 66 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCe--------------EEEEEEEeCCChHHHHH
Confidence 3467999999999999999999877655433333332222222222110 1248999999999997
Q ss_pred HHHHhhcccCceeEEEecccCCCChhHHHHHH-HHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~-~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
.++...+..+|++|||+|+++....+....|. .+.. .++|+|||+||+|+.... .+
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------~~------------- 127 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQI------QV------------- 127 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhc------CC-------------
Confidence 46778889999999999999876655554443 3333 358999999999985210 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCC---CCChhhHHHHHHHHH
Q 000923 785 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---GEGIPDLLLLLVQWT 841 (1222)
Q Consensus 785 ~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~t---GeGI~eLl~~i~~~~ 841 (1222)
.......+... ..++++++||++ +.||.+++..|+..+
T Consensus 128 -----~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 128 -----PTDLAQRFADA--------------HSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred -----CHHHHHHHHHH--------------cCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 00111112111 125899999999 888888887776543
No 150
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.62 E-value=1.4e-15 Score=162.12 Aligned_cols=167 Identities=18% Similarity=0.159 Sum_probs=103.1
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~ 709 (1222)
.+.+.|+|+|+.|+|||||+++|.+..+.. ... |.......+.+ ....+.+||||||..|.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~--T~~~~~~~i~~----------------~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVP--TLHPTSEELTI----------------GNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCC--ccCcceEEEEE----------------CCEEEEEEECCCCHHHH
Confidence 356789999999999999999998765421 111 11111111111 11248899999999999
Q ss_pred HHHHhhcccCceeEEEecccCCCCh-hHHHHHHHHH----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~-qT~e~l~~lk----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
.++..++..+|++|+|+|+.+.-.. .....+..+. ..++|+||++||+|+... ...
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-------~~~------------ 138 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA-------VSE------------ 138 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-------cCH------------
Confidence 8888888999999999999864221 1222333222 246899999999998621 000
Q ss_pred HHHHHHHHHHHHHHHcCCch-hhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 785 EFNMRLVQIVTQLKEQGMNT-ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 785 ~~~~~l~~i~~~L~e~gl~~-e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
..+...+....+.. ............++++++||++|.||.+++.+|..+
T Consensus 139 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 139 ------EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ------HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 11111111110000 000000011234689999999999999999999764
No 151
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=1.6e-15 Score=183.02 Aligned_cols=149 Identities=26% Similarity=0.332 Sum_probs=111.1
Q ss_pred CEEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh----
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 707 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~---- 707 (1222)
|+|+|+|++|+|||||+++|++.... .....|+|.+.....+.+.. ..+.||||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~----------------~~~~liDT~G~~~~~~~ 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG----------------REFILIDTGGIEPDDDG 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC----------------cEEEEEECCCCCCcchh
Confidence 57999999999999999999877642 34456666655444333322 3499999999987
Q ss_pred ----hHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHH
Q 000923 708 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 783 (1222)
Q Consensus 708 ----F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~ 783 (1222)
+......++..+|++|+|||+.+++.......+.+++..++|+|+|+||+|+...+
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~-------------------- 125 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE-------------------- 125 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--------------------
Confidence 23334567788999999999999998888888888998999999999999975200
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 784 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 784 ~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
.....+...|+ ..++++||.+|.|+.+|++.|..
T Consensus 126 --------~~~~~~~~lg~--------------~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 --------ADAYEFYSLGL--------------GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred --------hhHHHHHhcCC--------------CCCEEEEeeCCCCHHHHHHHHHh
Confidence 00111222222 24789999999999999998875
No 152
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=2e-15 Score=161.58 Aligned_cols=156 Identities=19% Similarity=0.177 Sum_probs=101.4
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHh
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 714 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~r 714 (1222)
|+|+|.+|+|||||+++|+...+.....+.+...+. ..+...+ ....+.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~~ 66 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDG--------------QPCMLEVLDTAGQEEYTALRDQ 66 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECC--------------EEEEEEEEECCCchhhHHHHHH
Confidence 899999999999999999876654322222211110 0000100 0123889999999999999999
Q ss_pred hcccCceeEEEecccCCCChhHHH-HHHHHHh------cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 715 GSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 715 g~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~------~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
+++.+|++|||+|.++........ ++..+.. .++|+|||+||+|+.... .+.
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~------~v~--------------- 125 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYER------EVS--------------- 125 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccC------ccC---------------
Confidence 999999999999998754333222 2233322 368999999999986310 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
........... .++++++||++|.||.+++.+|+..+..
T Consensus 126 --~~~~~~~~~~~---------------~~~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 126 --TEEGAALARRL---------------GCEFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred --HHHHHHHHHHh---------------CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 00000011111 1489999999999999999999876543
No 153
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.62 E-value=2.7e-15 Score=157.49 Aligned_cols=153 Identities=20% Similarity=0.191 Sum_probs=99.1
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
.+.|+|+|++++|||||+.+|....+... .++++.++. .+.. ....|.||||||+..|..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~-~~t~g~~~~--~~~~----------------~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVE--TVTY----------------KNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccc-cCCcccceE--EEEE----------------CCEEEEEEECCCCHHHHHH
Confidence 35799999999999999999976544321 111111111 1111 1134999999999999998
Q ss_pred HHhhcccCceeEEEecccCCCCh-hHHHHHH-HHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEP-QTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~-qT~e~l~-~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
+...+..+|++|||+|+++.... .....|. ++.. .++|+|||+||+|+...+ .
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---------------- 127 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM------K---------------- 127 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC------C----------------
Confidence 88889999999999999874322 1223332 2222 368999999999986210 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
...+...+ ++.. .....++++++||++|.||.++|.+|.
T Consensus 128 ---~~~i~~~~---~~~~-------~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 128 ---PHEIQEKL---GLTR-------IRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred ---HHHHHHHc---CCCc-------cCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 01111111 1100 012345899999999999999998885
No 154
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.62 E-value=1.9e-15 Score=154.28 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=101.5
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHh
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 714 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~r 714 (1222)
|+|+|++|+|||||+++|.+..+......++...+. .+.. ....+.+|||||+..|..++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~----------------~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTK----------------GNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEE----------------CCEEEEEEECCCCHhHHHHHHH
Confidence 799999999999999999887655433332222111 1111 1123899999999999999999
Q ss_pred hcccCceeEEEecccCCCC-hhHHHHHHHHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 715 GSGLCDIAILVVDIMHGLE-PQTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 715 g~~~aD~aILVVDa~dGv~-~qT~e~l~~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
++..+|++|+|+|+.+... .+....|..+.. .++|++||+||+|+.... .
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~------~------------------- 118 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL------S------------------- 118 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc------C-------------------
Confidence 9999999999999986322 222333433322 478999999999986310 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
...+. ...++.. .....++++++||++|.||..++.+|..
T Consensus 119 ~~~~~---~~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 119 VDELI---EQMNLKS-------ITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHH---HHhCccc-------ccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 00111 1111110 0123468999999999999999998864
No 155
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=6.8e-15 Score=154.62 Aligned_cols=166 Identities=22% Similarity=0.292 Sum_probs=122.5
Q ss_pred cccccCCCCEEEEEccCCCCchhhhhhhcCCc--ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecC
Q 000923 625 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDT 702 (1222)
Q Consensus 625 ~~~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~--v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDT 702 (1222)
...+....|-|+++|..|+|||||||+|++.. .-.+.++|.||.+..+.+.. .+.|+|.
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-------------------~~~lVDl 77 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-------------------ELRLVDL 77 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-------------------cEEEEeC
Confidence 33444466789999999999999999999865 56688899999997665432 3889999
Q ss_pred CCc----------hhhHHHHHhhccc---CceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCc
Q 000923 703 PGH----------ESFTNLRSRGSGL---CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 769 (1222)
Q Consensus 703 PGh----------e~F~~~~~rg~~~---aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a 769 (1222)
||+ +.+..+...++.. ..++++|||+.+++....++.+..+...++|++|++||+|.+.. .
T Consensus 78 PGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~------~ 151 (200)
T COG0218 78 PGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK------S 151 (200)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh------h
Confidence 993 4455555555543 56799999999999999999999999999999999999999841 1
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 770 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 770 ~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
+....+..+...| ++.. .....++..|+.++.||++|...|..++.
T Consensus 152 ---------------~~~k~l~~v~~~l---~~~~---------~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 152 ---------------ERNKQLNKVAEEL---KKPP---------PDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ---------------HHHHHHHHHHHHh---cCCC---------CccceEEEEecccccCHHHHHHHHHHHhh
Confidence 1111122232222 1111 11122888999999999999998887664
No 156
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.62 E-value=7.1e-15 Score=157.31 Aligned_cols=156 Identities=21% Similarity=0.304 Sum_probs=104.8
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcc--cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc---
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNV--QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH--- 705 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v--~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh--- 705 (1222)
+.+.|+|+|++|+|||||+++|++..+ ......|.|+.+..+.+ ...+.||||||+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-------------------NDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-------------------CCeEEEeCCCCCCCc
Confidence 456799999999999999999997542 12223344444332211 134999999995
Q ss_pred -------hhhHHHHHhhcc---cCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHH
Q 000923 706 -------ESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 706 -------e~F~~~~~rg~~---~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
..|..+...++. .++++++|+|+..+........+..+...++|+++++||+|+...+ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~------~----- 152 (196)
T PRK00454 84 KVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKG------E----- 152 (196)
T ss_pred CCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHH------H-----
Confidence 345445444444 3467889999988887777677777777899999999999996321 0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 776 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 776 ~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.......+...+... .++++++||++|.|+.++++.|..++
T Consensus 153 ----------~~~~~~~i~~~l~~~---------------~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 153 ----------RKKQLKKVRKALKFG---------------DDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred ----------HHHHHHHHHHHHHhc---------------CCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 000011111112110 24889999999999999999887654
No 157
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.62 E-value=2.5e-15 Score=154.64 Aligned_cols=155 Identities=24% Similarity=0.202 Sum_probs=103.1
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|.+++|||||+++|++..+.......++..+....+.+.. ....+.+|||||+..|..++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGG--------------KRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECC--------------EEEEEEEEECCchHHHHHhhH
Confidence 599999999999999999998766543333333222221121111 012389999999999999988
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHHH---hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk---~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..+..+|++|+|+|++++...+....| ..+. ..++|+|||+||+|+... ..+.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~------~~~~----------------- 124 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ------RVVS----------------- 124 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCCC-----------------
Confidence 889999999999999876543333222 2222 236899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
...+...+... .++++++||++|.|+.+++.+|.+.
T Consensus 125 ~~~~~~~~~~~---------------~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 125 KSEAEEYAKSV---------------GAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 00111111111 2478999999999999999998764
No 158
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.62 E-value=3e-15 Score=152.55 Aligned_cols=153 Identities=25% Similarity=0.229 Sum_probs=103.6
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+++|++++|||||+++|++..+.......++.+.....+.... ....++||||||+..|..+..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG--------------KTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC--------------EEEEEEEEecCChHHHHHHHH
Confidence 599999999999999999987776654333333333333222211 112489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHH-HHHHHHhc---CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~~---~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..+..+|++|+|+|+.+........ ++..+... +.|++|++||+|+... ....
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~------------------ 124 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ-----RQVS------------------ 124 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc-----cccc------------------
Confidence 9999999999999998743322222 33344443 5899999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
...+...+.. ..++++.+||.+|.|+.+++.+|.
T Consensus 125 ~~~~~~~~~~---------------~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 125 TEEAQQFAKE---------------NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHHHH---------------cCCeEEEEecCCCCCHHHHHHHHh
Confidence 0111111111 125899999999999999998875
No 159
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.62 E-value=3.4e-15 Score=161.40 Aligned_cols=149 Identities=24% Similarity=0.292 Sum_probs=95.9
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh-----
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 707 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~----- 707 (1222)
++|+|+|++|||||||+++|++..+......+.|.......+.+.. ...++||||||+..
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~~~ 106 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD---------------GREVLLTDTVGFIRDLPHQ 106 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC---------------CceEEEeCCCccccCCCHH
Confidence 5699999999999999999988764333222223222111111110 12599999999732
Q ss_pred ----hHHHHHhhcccCceeEEEecccCCCChhHH-HHHHHHH---hcCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 708 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 708 ----F~~~~~rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk---~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
|... ...+..+|++|+|+|++++...... .+...+. ..++|+|||+||+|+...+ .
T Consensus 107 ~~~~~~~~-~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~-------~-------- 170 (204)
T cd01878 107 LVEAFRST-LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE-------E-------- 170 (204)
T ss_pred HHHHHHHH-HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH-------H--------
Confidence 3222 2245679999999999887554333 2233333 3468999999999997310 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 780 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 780 ~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.. ..+. ...++++++||++|.||.+++.+|...
T Consensus 171 ----------~~---~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 171 ----------LE---ERLE---------------AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred ----------HH---HHhh---------------cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 00 0010 123589999999999999999988754
No 160
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.62 E-value=2.3e-15 Score=159.15 Aligned_cols=167 Identities=14% Similarity=0.187 Sum_probs=104.6
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|..++|||||+.+|+...+.....+.+...+.. .+..... ...|.||||||++.|..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGE--------------PYTLGLFDTAGQEDYDRLR 66 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECCE--------------EEEEEEEECCCccchhhhh
Confidence 359999999999999999999877654333333222211 1111110 0248899999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHH--HHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e--~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..+++.+|++|||+|.++....+... ++..++. .++|+|||+||+|+.. ...+...+...... ..
T Consensus 67 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~------~~~~~~~l~~~~~~---~v-- 135 (175)
T cd01874 67 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD------DPSTIEKLAKNKQK---PI-- 135 (175)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh------ChhhHHHhhhccCC---Cc--
Confidence 88999999999999998754444332 2333332 3689999999999852 11111111100000 00
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
.......+... .+.++++++||++|.||.+++..++.
T Consensus 136 -~~~~~~~~a~~-------------~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 136 -TPETGEKLARD-------------LKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred -CHHHHHHHHHH-------------hCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 00000111110 12368999999999999999988875
No 161
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=99.62 E-value=6.9e-16 Score=139.48 Aligned_cols=80 Identities=48% Similarity=0.755 Sum_probs=69.1
Q ss_pred eeceeEEecccccccCCCCeEEEEEEEeeeeecCCCeeecCCeEEEEEeeechhcccccccccccCceEEEEEccCCchh
Q 000923 1090 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1169 (1222)
Q Consensus 1090 v~p~~~~i~~~~vf~~~~~~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~ 1169 (1222)
+.||.|+|+|+|+||+++ +|+| +|+.|+|++|+|| +|. ..|.|.||++++++|++|++|++|||+|+|.
T Consensus 2 ~~p~ki~Ilp~~vFr~~~-~IvG-~V~~G~ik~G~~l---~G~--~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~---- 70 (81)
T PF14578_consen 2 VRPGKIRILPVCVFRQSD-AIVG-EVLEGIIKPGYPL---DGR--KIGRIKSIEDNGKNVDEAKKGDEVAISIEGP---- 70 (81)
T ss_dssp S-SEEEEEEEEEEECTCC-EEEE-EEEEEEEETT-EE---CSS--CEEEEEEEEETTEEESEEETT-EEEEEEET-----
T ss_pred CCceEEEECCcCEEecCC-eEEE-EEeeeEEeCCCcc---CCE--EEEEEEEeEECCcCccccCCCCEEEEEEeCC----
Confidence 468999999999999999 9999 9999999999999 663 4999999999999999999999999999986
Q ss_pred hhhhcccccccCCeEEE
Q 000923 1170 QQKMFGRHFDIEDELVS 1186 (1222)
Q Consensus 1170 ~~~~~gr~f~~~d~l~s 1186 (1222)
+ |+++||+||.
T Consensus 71 ---~---~i~eGDiLyV 81 (81)
T PF14578_consen 71 ---T---QIKEGDILYV 81 (81)
T ss_dssp -------TB-TT-EEEE
T ss_pred ---c---cCCCCCEEeC
Confidence 3 8999999995
No 162
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.62 E-value=2.2e-15 Score=156.59 Aligned_cols=151 Identities=22% Similarity=0.216 Sum_probs=97.5
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+++|+.++|||||+.+|....+.. ..+++..++ ..+.. ....+.||||||+..|..++.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~--~~~~~----------------~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY----------------KNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEE----------------CCEEEEEEECCCCHhHHHHHH
Confidence 58999999999999999996554432 111111111 01111 113489999999999999999
Q ss_pred hhcccCceeEEEecccCCCC-hhHHHHHHHH-Hh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLE-PQTIESLNLL-KM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~-~qT~e~l~~l-k~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
.+++.||++|||+|+++... .+..+.|..+ .. .+.|++|++||+|+...+ .
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~------------------ 118 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM------S------------------ 118 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC------C------------------
Confidence 99999999999999976321 1122223322 22 258999999999985210 0
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
...+...+ +++. .....+.++++||++|.||.+++++|.
T Consensus 119 -~~~i~~~~---~~~~-------~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 119 -AAEVTDKL---GLHS-------LRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred -HHHHHHHh---Cccc-------cCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 01111112 1110 012345789999999999999998885
No 163
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.62 E-value=7e-15 Score=151.09 Aligned_cols=157 Identities=26% Similarity=0.363 Sum_probs=104.6
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccc-cCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh-
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF- 708 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e-~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F- 708 (1222)
+..+|+|+|++|+|||||+++|++..+.... ....+.......+. .....+.||||||+..+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYT----------------DDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEE----------------cCCeEEEEEECCCCCcch
Confidence 4567999999999999999999876543211 11111111111110 01134899999997543
Q ss_pred -------HHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHH
Q 000923 709 -------TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 781 (1222)
Q Consensus 709 -------~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~ 781 (1222)
.......+..+|++++|+|+.+.........+..+...+.|++|++||+|+... .
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------~------------ 127 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD------K------------ 127 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc------H------------
Confidence 234455688899999999999886666666677777778999999999998621 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 782 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 782 ~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
..+..+...+... ....+++++|++++.|+.+|+..|.++
T Consensus 128 ------~~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 128 ------EDLLPLLEKLKEL-------------GPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ------HHHHHHHHHHHhc-------------cCCCceEEEEeccCCChHHHHHHHHhh
Confidence 0111112222211 124589999999999999999988654
No 164
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.61 E-value=4e-15 Score=159.37 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=106.2
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
...|+|+|..++|||||+.+|....+.......++.++....+..... ...|.||||||+..|..+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~--------------~~~l~iwDt~G~~~~~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGR--------------RVKLQLWDTSGQGRFCTI 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCE--------------EEEEEEEeCCCcHHHHHH
Confidence 356999999999999999999876554333233333332222222111 124899999999999999
Q ss_pred HHhhcccCceeEEEecccCCCChhHHH-HHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
+..+++.+|++|||+|.++..+.+... ++..+.. .++|+||+.||+|+.... .+
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~------~v----------------- 128 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR------QV----------------- 128 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhcc------CC-----------------
Confidence 998999999999999998754433332 3333433 378999999999985210 00
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
....+....... .++++.+||++|.||.++|.+|...+
T Consensus 129 ~~~~~~~~a~~~---------------~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 129 ATEQAQAYAERN---------------GMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred CHHHHHHHHHHc---------------CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 000111111111 24899999999999999999998654
No 165
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=5.8e-15 Score=154.18 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=100.5
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|+.++|||||+++|+...+... ...++... ..... .......++||||||+..|..++.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~---~~~~~------------~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEI---TIPAD------------VTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccce---Eeeee------------ecCCeEEEEEEeCCCchhhhHHHh
Confidence 589999999999999999987766432 11111110 00000 000112489999999998888877
Q ss_pred hhcccCceeEEEecccCCCChhHHH-HH-HHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e-~l-~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..+..+|++|||+|+++....+... .| ..++. .++|+|||+||+|+...+.. ..+ ...
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~-------~~~-----------~~~ 127 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ-------AGL-----------EEE 127 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch-------hHH-----------HHH
Confidence 7889999999999998755544432 23 33443 37899999999999632100 000 000
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
+..+...+ ....+++++||++|.|+.+++..+...+
T Consensus 128 ~~~~~~~~----------------~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 128 MLPIMNEF----------------REIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HHHHHHHH----------------hcccEEEEeccccccCHHHHHHHHHHHh
Confidence 11111111 1113799999999999999998876543
No 166
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.61 E-value=3.8e-15 Score=162.76 Aligned_cols=158 Identities=14% Similarity=0.064 Sum_probs=105.3
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|.+++|||||+++|++..+.......++.++....+..... ....+.||||||+..|..++.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-------------~~~~~~i~Dt~G~~~~~~l~~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-------------LNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-------------CEEEEEEEECCCcHHHHHHHH
Confidence 5899999999999999999987765544444444433222222110 012489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHH-HHHHHHh------cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~------~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
..++.+|++|||+|+++........ ++..+.. .+.|+|||+||+|+...+. +.
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~------v~-------------- 128 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT------VK-------------- 128 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccc------cC--------------
Confidence 9999999999999998743322222 2233332 2458999999999962110 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.... ..+... ..++++++||++|.||.+++++|...+.
T Consensus 129 ---~~~~-~~~~~~--------------~~~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 129 ---DDKH-ARFAQA--------------NGMESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred ---HHHH-HHHHHH--------------cCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0000 111111 0147899999999999999999986543
No 167
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.61 E-value=2.8e-15 Score=155.96 Aligned_cols=143 Identities=20% Similarity=0.202 Sum_probs=95.0
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc----hhhH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----ESFT 709 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh----e~F~ 709 (1222)
.|+|+|++|+|||||+++|.+..... ...+.+.+ .. ..+|||||+ ..|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-------~~~~~v~~------------------~~--~~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-------RKTQAVEF------------------ND--KGDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-------ccceEEEE------------------CC--CCcccCCccccCCHHHH
Confidence 49999999999999999987543111 11111111 00 126999995 3454
Q ss_pred HHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..+..++..+|++|+|||++++....+...+.+ ..++|+|+++||+|+.. .+
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~-------~~------------------- 107 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD-------AD------------------- 107 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc-------cc-------------------
Confidence 445566889999999999998765544433332 24689999999999852 11
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 844 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~ 844 (1222)
...+...+...++ ..|++++||++|.||.+|+..|..++...
T Consensus 108 ~~~~~~~~~~~~~-------------~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 108 VAATRKLLLETGF-------------EEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred HHHHHHHHHHcCC-------------CCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 0112222333332 25999999999999999999988766443
No 168
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.61 E-value=4.4e-15 Score=151.86 Aligned_cols=146 Identities=26% Similarity=0.350 Sum_probs=102.3
Q ss_pred CEEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH-
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 710 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~- 710 (1222)
..|+++|++|+|||||+++|++..+. .....++|..+....+.+. ...++||||||+..+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~DtpG~~~~~~~ 65 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG----------------GIPVRLIDTAGIRETEDE 65 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC----------------CEEEEEEECCCcCCCcch
Confidence 36999999999999999999876542 2334556555443333322 12489999999866532
Q ss_pred -------HHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHH
Q 000923 711 -------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 783 (1222)
Q Consensus 711 -------~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~ 783 (1222)
.+...+..+|++|+|+|+.+.........+.. ..+.|+|+|+||+|+...+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~------------------- 124 (157)
T cd04164 66 IEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSE------------------- 124 (157)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCccc-------------------
Confidence 34456778999999999997555444433333 46799999999999973110
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 784 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 784 ~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
. + ......+++++||.+|.|+.+|+.+|..++
T Consensus 125 ------~------~--------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 125 ------L------L--------------SLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ------c------c--------------cccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 0 0 011246899999999999999999887643
No 169
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.61 E-value=3.8e-15 Score=153.85 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=99.8
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+++|.+|+|||||+++|+...+.....+.+...+ ....... .....+.||||||+..|..++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD--------------GEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEEC--------------CEEEEEEEEECCChhhhhHHHH
Confidence 599999999999999999987665433222221111 1111110 0112489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChh-HHHHHHHH-H---hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~q-T~e~l~~l-k---~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..++.+|++|+|+|+.+.-... ...++..+ + ..++|+|||+||+|+... ....
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~----~~~~------------------ 124 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK----RQVS------------------ 124 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc----cccC------------------
Confidence 9999999999999987632111 11222222 2 257999999999998620 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
........... .+++|++||++|.||.+|+..|...+
T Consensus 125 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 125 -SEEAANLARQW---------------GVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred -HHHHHHHHHHh---------------CCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00011111111 14899999999999999999987654
No 170
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.61 E-value=4.2e-15 Score=158.34 Aligned_cols=162 Identities=18% Similarity=0.185 Sum_probs=102.8
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
+.+.|+|+|.+|+|||||+++|.+..+... .+ |.+.....+.+ ....+.||||||+..|..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~--t~~~~~~~~~~----------------~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QP--TQHPTSEELAI----------------GNIKFTTFDLGGHQQARR 76 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc-CC--ccccceEEEEE----------------CCEEEEEEECCCCHHHHH
Confidence 457799999999999999999987654321 11 11111111111 123489999999999999
Q ss_pred HHHhhcccCceeEEEecccCCCCh-hHHHHHHHH-H---hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~-qT~e~l~~l-k---~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
++..++..+|++|+|||+.+.... .....+..+ . ..++|+||++||+|+.... +
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~--------------- 135 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA------S--------------- 135 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC------C---------------
Confidence 999999999999999999874221 122233222 2 2478999999999986311 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
...+...| ++..............+.|+++||++|.|+.+++++|..
T Consensus 136 ----~~~i~~~l---~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 136 ----EDELRYAL---GLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred ----HHHHHHHc---CCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 11122122 111000000000124568999999999999999999874
No 171
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.61 E-value=5.2e-15 Score=155.64 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=103.6
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|||+.++|||||+++|+...+.......+...+....+...+. ...+.||||||+..|..++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGV--------------PFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCChHHHHhhHH
Confidence 5899999999999999999987775544444433322222222111 02489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHH-HHHHHHHhc----CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk~~----~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..++.+|++|||+|+.+....... .++..+... ..|+|+|+||+|+...+. ...
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~----~~~----------------- 126 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ----YAL----------------- 126 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc----ccc-----------------
Confidence 999999999999999763222222 223333322 357899999999853110 000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.......+... -.++++++||.+|.||.+|+..|..++
T Consensus 127 -~~~~~~~~~~~--------------~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 127 -MEQDAIKLAAE--------------MQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred -cHHHHHHHHHH--------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00000111100 014789999999999999999998765
No 172
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.61 E-value=2.9e-15 Score=155.36 Aligned_cols=155 Identities=19% Similarity=0.123 Sum_probs=99.7
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|.+++|||||+.+++...+.....+.+. ......+...+. ...+.||||||++.|..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSS--------------PSVLEILDTAGTEQFASMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCE--------------EEEEEEEECCCcccccchH
Confidence 4699999999999999999987665433222111 111111111110 0238899999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhH-HHHHHHHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT-~e~l~~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
..++..+|++|+|+|.++...-+. ..++..+.. .++|++||+||+|+.... .+.
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~------~~~--------------- 125 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER------EVS--------------- 125 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC------ccC---------------
Confidence 999999999999999987432222 222223322 478999999999985210 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
... ...+.. .+ .++++++||++|.||.+++.+|...
T Consensus 126 --~~~-~~~~~~------------~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 126 --SAE-GRALAE------------EW--GCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred --HHH-HHHHHH------------Hh--CCEEEEecCCCCCCHHHHHHHHHHh
Confidence 000 011110 01 1489999999999999999988754
No 173
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.61 E-value=2.8e-15 Score=160.36 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=104.4
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|..|+|||||+.+|+...+.....+.+...... .+.... ....++||||||+..|..++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~~~--------------~~~~l~i~Dt~G~~~~~~l~~ 66 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFVDG--------------LHIELSLWDTAGQEEFDRLRS 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEECC--------------EEEEEEEEECCCChhcccccc
Confidence 59999999999999999998876654322222211110 000000 012489999999999998888
Q ss_pred hhcccCceeEEEecccCCCChhHHH--HHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e--~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.++..+|++|||+|+++....+... ++..+.. .++|+|||+||+|+... ......+.. ..... ..
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~------~~~~~~~~~----~~~~~-v~ 135 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA------RNERDDLQR----YGKHT-IS 135 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC------hhhHHHHhh----ccCCC-CC
Confidence 8899999999999998754444432 3444443 37899999999999631 000000000 00000 00
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.......... .+.++++++||++|.||.+++.+|...+
T Consensus 136 ~~~~~~~~~~--------------~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 136 YEEGLAVAKR--------------INALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred HHHHHHHHHH--------------cCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 0001111111 1236899999999999999999987654
No 174
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.61 E-value=8.1e-15 Score=154.85 Aligned_cols=156 Identities=22% Similarity=0.202 Sum_probs=101.7
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
.+.|+++|..++|||||+.+|....+.. ..+++..++. .+. +....+.||||||+..|..+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~--~~~----------------~~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVE--TVT----------------YKNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceE--EEE----------------ECCEEEEEEECCCChhhHHH
Confidence 4679999999999999999997554422 1122211111 111 11134899999999999999
Q ss_pred HHhhcccCceeEEEecccCCCC-hhHHHHHHHHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~-~qT~e~l~~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
+..++..+|++|+|+|+++... ....+.|..+.. .++|++||+||+|+...+ +
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~---------------- 131 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------K---------------- 131 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------C----------------
Confidence 9999999999999999986321 122334433322 358999999999986311 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...+...+ ++.. .....+.++++||++|.||.+++.+|...+
T Consensus 132 ---~~~i~~~~---~~~~-------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 132 ---AAEITEKL---GLHS-------IRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ---HHHHHHHh---Cccc-------cCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 00111111 2110 012345788999999999999999987643
No 175
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.60 E-value=6.2e-15 Score=156.76 Aligned_cols=157 Identities=22% Similarity=0.194 Sum_probs=101.9
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
+...|+|+|..++|||||+.+|....+.. ..+++..++ ..+. +....++||||||+..|..
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~--~~~~----------------~~~~~~~i~D~~Gq~~~~~ 76 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVE----------------YKNISFTVWDVGGQDKIRP 76 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeE--EEEE----------------ECCEEEEEEECCCCHHHHH
Confidence 34579999999999999999997654432 112222111 1111 1113499999999999999
Q ss_pred HHHhhcccCceeEEEecccCCCChh-HHHHHHHH-Hh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLL-KM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~q-T~e~l~~l-k~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
++..++..+|++|+|+|+++..... ....|..+ .. .++|++||+||+|+.... +
T Consensus 77 ~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~------~--------------- 135 (181)
T PLN00223 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------N--------------- 135 (181)
T ss_pred HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC------C---------------
Confidence 9999999999999999998743221 12222222 11 368999999999986310 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...+...| ++... ....+.++++||++|+||.+++++|...+
T Consensus 136 ----~~~~~~~l---~l~~~-------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 136 ----AAEITDKL---GLHSL-------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ----HHHHHHHh---Ccccc-------CCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 01111112 22100 01234688999999999999999987543
No 176
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.60 E-value=5.3e-15 Score=187.93 Aligned_cols=153 Identities=23% Similarity=0.318 Sum_probs=113.9
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCch----
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 706 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe---- 706 (1222)
.++|+|+|++|+|||||+++|++... ......|+|.+.......+. ...+.||||||+.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~----------------~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA----------------GTDFKLVDTGGWEADVE 338 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC----------------CEEEEEEeCCCcCCCCc
Confidence 45699999999999999999997653 23445677766543333322 2348999999965
Q ss_pred ----hhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHH
Q 000923 707 ----SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 782 (1222)
Q Consensus 707 ----~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~ 782 (1222)
.|...+..++..||++|||||+.+++.+....++..++..++|+|+|+||+|+... .
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~-------~------------ 399 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS-------E------------ 399 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc-------h------------
Confidence 35566677889999999999999999988888889999999999999999998520 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 783 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 783 ~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.....+...|+ + .+++|||++|.||.+|+++|+..++
T Consensus 400 ---------~~~~~~~~lg~-----------~---~~~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 400 ---------YDAAEFWKLGL-----------G---EPYPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred ---------hhHHHHHHcCC-----------C---CeEEEECCCCCCchHHHHHHHHhcc
Confidence 00011112222 1 3578999999999999999987653
No 177
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.60 E-value=3e-15 Score=157.01 Aligned_cols=166 Identities=18% Similarity=0.212 Sum_probs=103.0
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|++++|||||+++|+...+.....+.+.... ...+..... ...+.||||||+..|..++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGK--------------QYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCE--------------EEEEEEEeCCCccccccccc
Confidence 599999999999999999988776543333222111 111111110 12378999999999999988
Q ss_pred hhcccCceeEEEecccCCCChhHH--HHHHHHH--hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~--e~l~~lk--~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..+..+|++|||+|..+.-..+.. .++..++ ..++|+||++||+|+... ......+.... .. ...
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~------~~~~~~~~~~~----~~-~v~ 135 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD------PKTLARLNDMK----EK-PVT 135 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC------hhhHHHHhhcc----CC-CCC
Confidence 899999999999999875433332 1233333 347999999999998631 11111000000 00 000
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
.......+... +..+++++||++|.||.+++..++.
T Consensus 136 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 136 VEQGQKLAKEI--------------GAHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred HHHHHHHHHHc--------------CCCEEEEecCCcCCCHHHHHHHHHH
Confidence 01111111111 2247999999999999999988875
No 178
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.60 E-value=6.3e-15 Score=158.03 Aligned_cols=171 Identities=19% Similarity=0.203 Sum_probs=105.9
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
...|+|+|..++|||||+.+|+...+.......+..... ..+.... ....+.||||||++.|..+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~e~~~~l 67 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDG--------------RTVSLNLWDTAGQEEYDRL 67 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECC--------------EEEEEEEEECCCchhhhhh
Confidence 467999999999999999999987765433222221110 0011110 0124899999999999999
Q ss_pred HHhhcccCceeEEEecccCCCChhHHH-HH-HHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~qT~e-~l-~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
+..+++.+|++|||+|+++..+.+... .| ..+.. .++|+|||.||+|+... ......+... .+.
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~------~~~~~~~~~~------~~~ 135 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND------ADTLKKLKEQ------GQA 135 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC------hhhHHHHhhc------cCC
Confidence 999999999999999998754433332 22 22322 37899999999998631 1100000000 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.....-...|... .+.++++++||++|.||.+++..|+..+-
T Consensus 136 ~v~~~~~~~~a~~-------------~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 136 PITPQQGGALAKQ-------------IHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCHHHHHHHHHH-------------cCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 0000000111110 12358999999999999999999986553
No 179
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.60 E-value=6.6e-15 Score=187.09 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=115.1
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCch----
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 706 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe---- 706 (1222)
.+.|+|+|++|+|||||+++|++..+. .....|+|.+.....+.+. ...++||||||+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~----------------~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEID----------------GEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEEC----------------CCEEEEEECCCcccCcc
Confidence 467999999999999999999987642 3445666765543333332 2348899999952
Q ss_pred ------hhHHHH-HhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 707 ------SFTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 707 ------~F~~~~-~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
.|..++ ...+..||++|||||++++++.+....+..+...++|+|||+||+|+... ....
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~-------~~~~------ 580 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE-------FRRQ------ 580 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh-------hHHH------
Confidence 344443 34578899999999999999999999888888889999999999999631 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 780 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 780 ~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
.+...+.. .+. .....+++++||++|.||.+|+..+...+..
T Consensus 581 ------------~~~~~~~~-~l~---------~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 581 ------------RLERLWKT-EFD---------RVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred ------------HHHHHHHH-hcc---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 01111111 010 0134689999999999999999998877653
No 180
>PLN03110 Rab GTPase; Provisional
Probab=99.60 E-value=7e-15 Score=160.83 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=109.0
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|+.++|||||+.+|++..+.......+..++....+.+... ...+.||||||+..|..++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~--------------~~~l~l~Dt~G~~~~~~~~ 78 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK--------------TVKAQIWDTAGQERYRAIT 78 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 56999999999999999999877665433333333332222222211 1248999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHH-HHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~-l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
...++.++++|||+|.++....+.... +..++. .++|+|||+||+|+...+. +.
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~------~~---------------- 136 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRS------VA---------------- 136 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccC------CC----------------
Confidence 999999999999999987544434333 334433 3789999999999853110 00
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 844 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~ 844 (1222)
......+... ..++++++||++|.||.+++..|+..+...
T Consensus 137 --~~~~~~l~~~--------------~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 137 --EEDGQALAEK--------------EGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred --HHHHHHHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001111111 125899999999999999999998776553
No 181
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=7.1e-15 Score=152.20 Aligned_cols=162 Identities=18% Similarity=0.144 Sum_probs=119.2
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
+.+.|+|+|..|+|||+|+.+|....+.+.....|..++....+...+.. ..|.||||.|+++|..
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~--------------iKlQIWDTAGQERFrt 73 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKT--------------IKLQIWDTAGQERFRT 73 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceE--------------EEEEeeeccccHHHhh
Confidence 55679999999999999999999999888777777777766666655432 2499999999999999
Q ss_pred HHHhhcccCceeEEEecccCCCChhHHHH-HHHHHhc---CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~qT~e~-l~~lk~~---~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
++..+++.|+++|||+|+++.-+...... +..++.+ ++|.++|.||+|+...|.-.
T Consensus 74 it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~-------------------- 133 (205)
T KOG0084|consen 74 ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVS-------------------- 133 (205)
T ss_pred hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecC--------------------
Confidence 99999999999999999998444333333 3344443 78999999999997422100
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCcee-EEEcCCCCCCChhhHHHHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFN-IVPTSAISGEGIPDLLLLLVQWTQKT 844 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~-vvpvSA~tGeGI~eLl~~i~~~~~~~ 844 (1222)
.... ..|... ..+| ++++||+.+.||.+.|..|...+...
T Consensus 134 ---~~~a-~~fa~~--------------~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 134 ---TEEA-QEFADE--------------LGIPIFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred ---HHHH-HHHHHh--------------cCCcceeecccCCccCHHHHHHHHHHHHHHh
Confidence 0000 111111 1235 99999999999999998887655443
No 182
>PLN03118 Rab family protein; Provisional
Probab=99.60 E-value=7.5e-15 Score=159.82 Aligned_cols=159 Identities=20% Similarity=0.145 Sum_probs=103.9
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
..+.|+|+|++++|||||+++|++..+... ...++.++....+.+... ...+.||||||+..|..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~--------------~~~l~l~Dt~G~~~~~~ 77 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGK--------------RLKLTIWDTAGQERFRT 77 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCCceeEEEEEEEEECCE--------------EEEEEEEECCCchhhHH
Confidence 346799999999999999999987665321 112222111111111110 12489999999999999
Q ss_pred HHHhhcccCceeEEEecccCCCChhHHH-HHH-HHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLN-LLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~qT~e-~l~-~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
++..+++.+|++|||+|+.+....+... .|. .+.. .++|+|||+||+|+.... .+.
T Consensus 78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~------~i~------------ 139 (211)
T PLN03118 78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESER------DVS------------ 139 (211)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC------ccC------------
Confidence 9999999999999999998754443332 232 2222 357999999999986310 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 785 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 785 ~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
........... .+++|++||++|.||.+++.+|...+.
T Consensus 140 -----~~~~~~~~~~~---------------~~~~~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 140 -----REEGMALAKEH---------------GCLFLECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred -----HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00011111111 247999999999999999999986653
No 183
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.60 E-value=4.4e-15 Score=155.77 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=98.4
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHh
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 714 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~r 714 (1222)
|+|+|+.++|||||+++|.+..+.. ...++...+. .+.+ ....+.||||||+..|..++..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~----------------~~~~i~l~Dt~G~~~~~~~~~~ 62 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY----------------KNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE----------------CCEEEEEEECCCChhcchHHHH
Confidence 8999999999999999998764432 1111111111 1111 1234899999999999988888
Q ss_pred hcccCceeEEEecccCCCCh-hHHHHHHHHH-h---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 715 GSGLCDIAILVVDIMHGLEP-QTIESLNLLK-M---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 715 g~~~aD~aILVVDa~dGv~~-qT~e~l~~lk-~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.+..+|++|||+|+++.-.. .....+..+. . .+.|+|||+||+|+... ..
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------~~------------------- 117 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA------LS------------------- 117 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC------CC-------------------
Confidence 89999999999999863211 1122333232 2 24799999999998521 00
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...+...+....+ ..+..+.++++||++|.||.+++.+|...+
T Consensus 118 ~~~~~~~~~~~~~---------~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 118 VEEMTELLSLHKL---------CCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHhCCccc---------cCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 0111111110000 012345789999999999999999987543
No 184
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.60 E-value=1.6e-14 Score=157.83 Aligned_cols=187 Identities=21% Similarity=0.272 Sum_probs=110.8
Q ss_pred cccCCCCEEEEEccCCCCchhhhhhhcCCcccccc--cCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCC
Q 000923 627 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 704 (1222)
Q Consensus 627 ~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e--~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPG 704 (1222)
..+.|...|+|||.+|+|||||+|.+++..+..-. ....++++.+.+..- ..++.|+||||
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~-----------------eTQlvf~DTPG 129 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG-----------------ETQLVFYDTPG 129 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC-----------------ceEEEEecCCc
Confidence 45678888999999999999999999988764321 122223332222111 14699999999
Q ss_pred c------h------hhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhc-CCceEEEEeeeccccCcccCCCchH
Q 000923 705 H------E------SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-NTEFIVALNKVDRLYGWKTCRNAPI 771 (1222)
Q Consensus 705 h------e------~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~-~vP~IVviNKiDl~~~w~~~~~a~i 771 (1222)
. . .|....++.+..+|++++|+|+.+.-.+..-..|..+..+ ++|-|+|+||+|.+..
T Consensus 130 lvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~--------- 200 (379)
T KOG1423|consen 130 LVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQ--------- 200 (379)
T ss_pred ccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchh---------
Confidence 2 1 2333456788899999999999863333333455555554 7999999999998631
Q ss_pred HHHHHHhhHHHHH-HHHHHHHHHHHHHHHcCCchhhhhcc-ccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 772 VKAIKQQNTDVQN-EFNMRLVQIVTQLKEQGMNTELYYKN-KDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 772 ~~~l~~q~~~~~~-~~~~~l~~i~~~L~e~gl~~e~~~~~-~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...|......+.+ .+.....++...+.. ......|+. -.|..+-.||++||++|.||.+|-++|...+
T Consensus 201 k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~--~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 201 KRLLLNLKDLLTNGELAKLKLEVQEKFTD--VPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred hhHHhhhHHhccccccchhhhhHHHHhcc--CCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 0011110000000 000000111111111 111122211 1244466799999999999999999998765
No 185
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.8e-15 Score=154.59 Aligned_cols=162 Identities=20% Similarity=0.243 Sum_probs=114.1
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~ 709 (1222)
.+...|+++|..++|||||+-++....|.... -.+||+.|+....... . ....+.||||.|++.|.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~----e~TIGaaF~tktv~~~--------~--~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENI----EPTIGAAFLTKTVTVD--------D--NTIKFEIWDTAGQERYH 68 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccccc----ccccccEEEEEEEEeC--------C--cEEEEEEEEcCCccccc
Confidence 46678999999999999999999988887653 3345555543221100 0 01348899999999999
Q ss_pred HHHHhhcccCceeEEEecccCCCChhHHHH-HHHHHhc---CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~qT~e~-l~~lk~~---~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
.+...+++.+++||||+|+++--+.++... +..|... ++-+.+|.||+|+... +.-
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~----R~V---------------- 128 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER----REV---------------- 128 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc----ccc----------------
Confidence 999999999999999999998655555443 4555554 3345569999999721 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
...+........| ..|+.+||+||.||.+++..|...++.
T Consensus 129 ---~~~ea~~yAe~~g---------------ll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 129 ---EFEEAQAYAESQG---------------LLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred ---cHHHHHHHHHhcC---------------CEEEEEecccccCHHHHHHHHHHhccC
Confidence 1122222222233 489999999999999999999877654
No 186
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.59 E-value=6.4e-15 Score=171.95 Aligned_cols=148 Identities=24% Similarity=0.291 Sum_probs=98.4
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc-------
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------- 705 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh------- 705 (1222)
+.|+|+|++|+|||||+++|++..+......+.|.++....+.+. ....++||||||+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~---------------~~~~i~l~DT~G~~~~l~~~ 254 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP---------------DGGEVLLTDTVGFIRDLPHE 254 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC---------------CCceEEEEecCcccccCCHH
Confidence 679999999999999999999876543344445544432222221 1135999999997
Q ss_pred --hhhHHHHHhhcccCceeEEEecccCCCChhHH----HHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 706 --ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 706 --e~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~----e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
+.|..+ ...+..+|++|+|||+++....... ..+..+...++|+|+|+||+|+... .
T Consensus 255 lie~f~~t-le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~---------- 317 (351)
T TIGR03156 255 LVAAFRAT-LEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------P---------- 317 (351)
T ss_pred HHHHHHHH-HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------H----------
Confidence 334433 3357789999999999886544332 2233333347899999999999620 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 780 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 780 ~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.+. .+.. ...++|+|||++|.||.+|+..|..+
T Consensus 318 ---------~v~----~~~~---------------~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 318 ---------RIE----RLEE---------------GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ---------hHH----HHHh---------------CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 000 0100 11368999999999999999988653
No 187
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.59 E-value=5.4e-15 Score=159.32 Aligned_cols=157 Identities=19% Similarity=0.206 Sum_probs=100.7
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHh
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 714 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~r 714 (1222)
|+|+|+.|+|||||+++|++..+.......+ ..+....+.+... ...++|||||||..|..++..
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~--------------~~~l~i~D~~G~~~~~~~~~~ 66 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEPKYRRTV-EEMHRKEYEVGGV--------------SLTLDILDTSGSYSFPAMRKL 66 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCch-hhheeEEEEECCE--------------EEEEEEEECCCchhhhHHHHH
Confidence 8999999999999999998766543211111 1111111111110 024889999999999999999
Q ss_pred hcccCceeEEEecccCCCChhHHHHH-HHHH----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 715 GSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 715 g~~~aD~aILVVDa~dGv~~qT~e~l-~~lk----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
++..+|++|||+|+++....+....| ..+. ..++|+|||+||+|+... ...+.
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----~~~v~----------------- 124 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE-----ERQVP----------------- 124 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc-----ccccc-----------------
Confidence 99999999999999874333222222 2222 247999999999998631 00000
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.......+ .. ...++++++||++|.||.+|+.+|...+.
T Consensus 125 ~~~~~~~~-~~-------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 125 AKDALSTV-EL-------------DWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHHHHHH-Hh-------------hcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 00000000 00 01247899999999999999999987654
No 188
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.59 E-value=5.3e-15 Score=150.09 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=88.7
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCch-----hh
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-----SF 708 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe-----~F 708 (1222)
.|+|+|++|+|||||+++|++..+... . |+ + + .| ...+|||||+. .|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~~--~--t~--~---~----------------~~---~~~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILYK--K--TQ--A---V----------------EY---NDGAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccccc--c--ce--e---E----------------EE---cCeeecCchhhhhhHHHH
Confidence 599999999999999999986643210 0 10 0 0 01 12689999972 23
Q ss_pred HHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 709 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 709 ~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..+ ...++.+|++|||+|++++.+.++..++.. ...|+|+|+||+|+... ...
T Consensus 54 ~~~-~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~-----~~~------------------ 106 (142)
T TIGR02528 54 SAL-IVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEA-----DVD------------------ 106 (142)
T ss_pred HHH-HHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCc-----ccC------------------
Confidence 333 345889999999999998877666444333 24599999999998621 000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
...+...+...+ ..+++++||++|.|+.+|+.+|.
T Consensus 107 -~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 107 -IERAKELLETAG--------------AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred -HHHHHHHHHHcC--------------CCcEEEEecCCCCCHHHHHHHHh
Confidence 001111111111 23799999999999999988763
No 189
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.59 E-value=4.6e-15 Score=165.41 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=103.6
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|..++|||||+++|+...+.....+.+. ++....+...+. ...|.||||||+..|..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~--------------~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGE--------------VYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCE--------------EEEEEEEECCCChhhhHHHH
Confidence 599999999999999999987776543333221 111111111110 12488999999999999988
Q ss_pred hhcccCceeEEEecccCCCChhHHH-HHHHHHh------------cCCceEEEEeeeccccCcccCCCchHHHHHHHhhH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM------------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 780 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~------------~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~ 780 (1222)
.++..+|++|||+|+++....+... ++..+.. .++|+|||+||+|+.... ..
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~----~v----------- 131 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR----EV----------- 131 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc----cc-----------
Confidence 8899999999999998743322222 1222211 368999999999986210 00
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 781 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 781 ~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
....+...+... ..++++++||++|.||.+|+..|..++.-
T Consensus 132 --------~~~ei~~~~~~~--------------~~~~~~evSAktg~gI~elf~~L~~~~~~ 172 (247)
T cd04143 132 --------QRDEVEQLVGGD--------------ENCAYFEVSAKKNSNLDEMFRALFSLAKL 172 (247)
T ss_pred --------CHHHHHHHHHhc--------------CCCEEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 001111111100 13589999999999999999999876543
No 190
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.59 E-value=1e-14 Score=151.26 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=101.2
Q ss_pred EEEEEccCCCCchhhhhhhcCC--cccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~--~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
.|+|+|.+++|||||+++|+.. .+......++..++....++.... ....+.||||||+..|..+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-------------~~~~l~i~Dt~G~~~~~~~ 68 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTD-------------NTVELFIFDSAGQELYSDM 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCC-------------CEEEEEEEECCCHHHHHHH
Confidence 5999999999999999999753 333322222322322222222100 0124899999999999999
Q ss_pred HHhhcccCceeEEEecccCCCChhHHH-HHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
+...+..+|++|+|+|+++........ ++..+.. .++|+|+|+||+|+... ..+..
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~~~~--------------- 127 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADK------AEVTD--------------- 127 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc------cCCCH---------------
Confidence 999999999999999998743322222 2233333 36899999999998631 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.....+... ..++++++||.+|.||.+++..|.+.
T Consensus 128 ---~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 128 ---AQAQAFAQA--------------NQLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred ---HHHHHHHHH--------------cCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 000011100 12579999999999999999998764
No 191
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.59 E-value=1e-14 Score=155.16 Aligned_cols=159 Identities=20% Similarity=0.187 Sum_probs=102.1
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
...|+|+|+.++|||||+.+|....+.. ..+++..++. .+. +....++||||||+..|..+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~----------------~~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE----------------YKNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE----------------ECCEEEEEEECCCCHhHHHH
Confidence 3569999999999999999997544432 1111111111 111 11134899999999999999
Q ss_pred HHhhcccCceeEEEecccCCCCh-hHHHHHH-HHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEP-QTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~-qT~e~l~-~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
+..++..+|++|+|+|+++.-.. .....|. ++.. ..+|+|||+||+|+...+ ..
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~~--------------- 136 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------ST--------------- 136 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------CH---------------
Confidence 99999999999999999762111 1122222 2222 358999999999986311 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 844 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~ 844 (1222)
..+...+ ++. .+ ....++++++||++|.||.+++.+|...+...
T Consensus 137 ----~~i~~~l---~~~--~~-----~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 137 ----TEVTEKL---GLH--SV-----RQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred ----HHHHHHh---CCC--cc-----cCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 0111111 221 00 01345788999999999999999998766544
No 192
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.59 E-value=6.6e-15 Score=157.51 Aligned_cols=161 Identities=15% Similarity=0.101 Sum_probs=103.0
Q ss_pred EEEEEccCCCCchhhhhhhcCCccccccc-CceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~-~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
.|+|+|++++|||||+++|++..+..+.. +.+...+....+...... ..+.||||||+..|..++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERV--------------VTLGIWDTAGSERYEAMS 67 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEE--------------EEEEEEECCCchhhhhhh
Confidence 59999999999999999999877654221 222111111111111100 237899999999999888
Q ss_pred HhhcccCceeEEEecccCCCChhHH-HHHHHHHhc--CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk~~--~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
...+..+|++|||+|+++....+.. .++..++.. ++|+|||+||+|+...-.. ...+ .
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~v-----------------~ 128 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRS--LRQV-----------------D 128 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccc--cCcc-----------------C
Confidence 8888999999999999874332222 234444433 6899999999998631000 0000 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
...+....... .++++++||++|.||.+|+++|...+-
T Consensus 129 ~~~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 129 FHDVQDFADEI---------------KAQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00111111111 247899999999999999999987653
No 193
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.59 E-value=7.5e-15 Score=153.93 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=101.8
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHh
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 714 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~r 714 (1222)
|+|+|..++|||||+++|++..+.......+..... ..+.... ....+.||||||+..|..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDG--------------KPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECC--------------EEEEEEEEECCCCcccchhchh
Confidence 689999999999999999987765433222221111 1111110 0124899999999999999999
Q ss_pred hcccCceeEEEecccCCCChhHH--HHHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000923 715 GSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 790 (1222)
Q Consensus 715 g~~~aD~aILVVDa~dGv~~qT~--e~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l 790 (1222)
.+..+|++|||+|+++....+.. .++..+.. .++|+|||+||+|+... ......+...... .. ..
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~---~v--~~ 134 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRED------KSTLRELSKQKQE---PV--TY 134 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhC------hhhhhhhhcccCC---Cc--cH
Confidence 99999999999999874222221 12333333 37999999999998631 0000000000000 00 00
Q ss_pred HHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 791 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 791 ~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.......... +.++++++||++|.||.+++..|...+
T Consensus 135 ~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 135 EQGEALAKRI--------------GAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHHHHHHHHc--------------CCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 0111111111 224799999999999999999987643
No 194
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.59 E-value=1.4e-14 Score=154.35 Aligned_cols=160 Identities=11% Similarity=0.092 Sum_probs=102.1
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+++|..++|||||+.+|+...+.......+..++....+...+. ...+.||||+|+..|..++.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~--------------~~~l~iwDt~G~~~~~~~~~ 67 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGT--------------EITFSIWDLGGQREFINMLP 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCE--------------EEEEEEEeCCCchhHHHhhH
Confidence 5899999999999999999877665433333322222112222110 02489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHH-HHHHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.+++.+|++|||+|+++....+.. .++..++. ..+| |+|+||+|+........ +. .
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~---------------~~----~ 127 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEE---------------QE----E 127 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchh---------------hh----h
Confidence 999999999999999874333322 22333433 2456 67899999963110000 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
+......+... ++ ++++++||++|.||.+++.+|...+
T Consensus 128 ~~~~~~~~a~~------------~~--~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 128 ITKQARKYAKA------------MK--APLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred hHHHHHHHHHH------------cC--CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00011111111 11 5899999999999999999987654
No 195
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.59 E-value=4.7e-15 Score=155.34 Aligned_cols=155 Identities=23% Similarity=0.246 Sum_probs=100.6
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCccccc-ccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 708 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~-e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F 708 (1222)
.+.+.|+|+|++|+|||||+++|.+..+... ...|++. ..+. +....+.+|||||+..|
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~----------------~~~~~~~~~D~~G~~~~ 71 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQ----------------SDGFKLNVWDIGGQRAI 71 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEE----------------ECCEEEEEEECCCCHHH
Confidence 3457799999999999999999987543211 1111111 0111 11234899999999999
Q ss_pred HHHHHhhcccCceeEEEecccCCCC-hhHHHHHHHH----HhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHH
Q 000923 709 TNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 783 (1222)
Q Consensus 709 ~~~~~rg~~~aD~aILVVDa~dGv~-~qT~e~l~~l----k~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~ 783 (1222)
..++...+..+|++|+|+|+.+... ..+...+..+ ...++|+++++||+|+.... .
T Consensus 72 ~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------~------------- 132 (173)
T cd04155 72 RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------P------------- 132 (173)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------C-------------
Confidence 9888888999999999999976321 1222232222 23478999999999986310 0
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 784 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 784 ~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
+..+...+ ++.. + ....++++++||++|+||.+++++|+.
T Consensus 133 ------~~~i~~~l---~~~~-~------~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 133 ------AEEIAEAL---NLHD-L------RDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ------HHHHHHHc---CCcc-c------CCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 01111111 2210 0 113457899999999999999999863
No 196
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.59 E-value=7.4e-15 Score=155.13 Aligned_cols=165 Identities=17% Similarity=0.195 Sum_probs=102.1
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|..++|||||+.+++...+.....+.+..... ..+.... ....|+||||||+..|..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDG--------------KPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECC--------------EEEEEEEEECCCchhhhhhh
Confidence 46999999999999999999876664332222211111 1111110 01248899999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHH-H-HHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH-
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN- 787 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~-e-~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~- 787 (1222)
...+..+|++|||+|+++.-+.+.. . ++..+.. .++|+|||.||+|+... ......+. ....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~------~~~~~~~~-------~~~~~ 133 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD------KDTIEKLK-------EKKLT 133 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccC------hhhHHHHh-------hccCC
Confidence 8899999999999999875443333 1 2333333 26899999999998521 00000000 0000
Q ss_pred -HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 788 -MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 788 -~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
............. +.++++++||++|.||.+++..+..
T Consensus 134 ~v~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 134 PITYPQGLAMAKEI--------------GAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CCCHHHHHHHHHHc--------------CCcEEEEecccccCCHHHHHHHHHH
Confidence 0000011111111 2358999999999999999988864
No 197
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.58 E-value=7.8e-15 Score=158.50 Aligned_cols=150 Identities=19% Similarity=0.178 Sum_probs=101.7
Q ss_pred EccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHhhcc
Q 000923 638 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSG 717 (1222)
Q Consensus 638 vG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~ 717 (1222)
+|+.++|||||+.+|+...+.......+..++....+.+... ...|.||||||++.|..++..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~--------------~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--------------PIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE--------------EEEEEEEECCCchhhhhhhHHHhc
Confidence 699999999999999876654432222222222222211110 124999999999999999999999
Q ss_pred cCceeEEEecccCCCChhHHHHH-HHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000923 718 LCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 794 (1222)
Q Consensus 718 ~aD~aILVVDa~dGv~~qT~e~l-~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~ 794 (1222)
.+|++|||+|+++..+.+....| ..++. .++|+|||+||+|+... .+. ...+
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-------~v~-----------------~~~~- 121 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR-------KVK-----------------AKSI- 121 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc-------cCC-----------------HHHH-
Confidence 99999999999987655444333 33443 47899999999998520 000 0000
Q ss_pred HHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 795 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 795 ~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.+... ..++++++||++|.||.++|.+|+..+
T Consensus 122 -~~~~~--------------~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 122 -TFHRK--------------KNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred -HHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11110 125899999999999999999998654
No 198
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.58 E-value=6.5e-15 Score=154.56 Aligned_cols=168 Identities=19% Similarity=0.154 Sum_probs=101.3
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|+.++|||||+.+|+...+.....+.+...+.. .+.... ....+.||||||+..|..++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDG--------------KQVELALWDTAGQEDYDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECC--------------EEEEEEEEeCCCchhhhhcc
Confidence 469999999999999999999776554332222211111 111111 01238999999999998888
Q ss_pred HhhcccCceeEEEecccCCCChhHH-H-HHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~-e-~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..++..+|+++||+|+++....... . ++..++. .++|+|+|+||+|+...+. ....+..... ...
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~i~~~~~-----~~v 135 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH------TRRELAKMKQ-----EPV 135 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh------hhhhhhhccC-----CCc
Confidence 7888999999999999863222222 1 2233333 3789999999999863211 0000000000 000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
............ +.++++++||++|.||.+++.+|...
T Consensus 136 ~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 136 KPEEGRDMANKI--------------GAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred cHHHHHHHHHHc--------------CCcEEEEeccccCcCHHHHHHHHHHH
Confidence 000000011111 23589999999999999999988753
No 199
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=1.4e-14 Score=154.49 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=104.5
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
+.|+|+|..++|||||+++|+...+.......++.+.....+..... ...+.||||||+..|..++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENK--------------IIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCCcHHHHhhH
Confidence 35999999999999999999987765422223322222222211110 1238899999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHH-HHHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
...+..+|++|||+|+++.-...... ++..+.. .++|+||++||+|+... ..+.
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~------~~v~---------------- 124 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNN------KVVD---------------- 124 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccc------ccCC----------------
Confidence 99999999999999998743322222 2233332 35799999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
......+... ..++++++||++|.||.+++.+|+..+..
T Consensus 125 --~~~~~~~~~~--------------~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 125 --SNIAKSFCDS--------------LNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred --HHHHHHHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 0000011110 12489999999999999999998876643
No 200
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.58 E-value=1.2e-14 Score=151.07 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=102.8
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|+.++|||||+.+|+...+......++..+.....+...... ..+.||||||+..|..++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIK--------------VRIQIWDTAGQERYQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEE--------------EEEEEEeCCCcHhHHhhHH
Confidence 59999999999999999998877654433444333322222221110 2388999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHH-HHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~-l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..+..+|++|+|+|.++.-..+.... +..+.. .++|+|++.||+|+... +...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~----~~v~------------------- 124 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK----RQVG------------------- 124 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----cCCC-------------------
Confidence 99999999999999987432222222 222222 36899999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
......+... + .++++++||++|.||.+++.+|..+
T Consensus 125 -~~~~~~~~~~------------~--~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 125 -DEQGNKLAKE------------Y--GMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred -HHHHHHHHHH------------c--CCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 0001111111 1 1589999999999999999998753
No 201
>PLN03108 Rab family protein; Provisional
Probab=99.58 E-value=1.4e-14 Score=157.79 Aligned_cols=157 Identities=22% Similarity=0.170 Sum_probs=103.5
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|++++|||||+++|+...+.......+..++....+.+... ...+.||||||+..|..++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~--------------~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------------PIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCE--------------EEEEEEEeCCCcHHHHHHH
Confidence 56999999999999999999877655433223322222211211110 0138899999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHH-HHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~-l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
...+..+|++|||+|+++....+.... +..+.. .++|+|+++||+|+... +...
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~----~~~~------------------ 130 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR----RAVS------------------ 130 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc----cCCC------------------
Confidence 999999999999999987433333222 222222 36899999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.......+... .++++++||++|.||.++|.+++..+
T Consensus 131 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 131 -TEEGEQFAKEH---------------GLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 24899999999999999998887654
No 202
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.58 E-value=8e-15 Score=153.34 Aligned_cols=157 Identities=17% Similarity=0.117 Sum_probs=100.2
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|.+|+|||||+++|++..+.....+.+. ......+.+.. ....+.+||||||..|..++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDG--------------RQCDLEILDTAGTEQFTAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEECC--------------EEEEEEEEeCCCcccchhhh
Confidence 3599999999999999999986654322111111 00011111110 01248899999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHHH-HH----HHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIESL-NL----LKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~----lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
...+..++++|||+|.++....+....| .. ....++|+|+++||+|+... ..+.
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~------~~~~--------------- 125 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD------RQVS--------------- 125 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc------CccC---------------
Confidence 9999999999999999874332222222 11 12347999999999998621 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
........... +.++++++||++|.||.+++.+|+..+
T Consensus 126 --~~~~~~~~~~~--------------~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 126 --REDGVSLSQQW--------------GNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred --HHHHHHHHHHc--------------CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00011111111 235899999999999999999987543
No 203
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.58 E-value=1.2e-14 Score=156.97 Aligned_cols=157 Identities=20% Similarity=0.163 Sum_probs=97.6
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH----
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT---- 709 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~---- 709 (1222)
.|+|+|.+++|||||+++|++..+......+++..+....+.+.+. ...++||||||+..|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGR--------------VYDLHILDVPNMQRYPGTAG 67 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCE--------------EEEEEEEeCCCcccCCccch
Confidence 5999999999999999999987765433333332221111111110 0238899999976542
Q ss_pred ----HHHHhhcccCceeEEEecccCCCChhHHHHH-HHHH------hcCCceEEEEeeeccccCcccCCCchHHHHHHHh
Q 000923 710 ----NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 778 (1222)
Q Consensus 710 ----~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk------~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q 778 (1222)
..+.+.+..+|++|||+|+++..+.+....| ..+. ..++|+|||+||+|+... +...
T Consensus 68 ~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~----~~~~-------- 135 (198)
T cd04142 68 QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH----RFAP-------- 135 (198)
T ss_pred hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc----cccc--------
Confidence 2244567889999999999875333322222 2222 246899999999999521 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 779 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 779 ~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
......+.... ..++++++||++|.||.+|+..++..+
T Consensus 136 ------------~~~~~~~~~~~-------------~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 136 ------------RHVLSVLVRKS-------------WKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred ------------HHHHHHHHHHh-------------cCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 00011111110 125899999999999999998887543
No 204
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.58 E-value=1.2e-14 Score=147.23 Aligned_cols=154 Identities=24% Similarity=0.308 Sum_probs=106.4
Q ss_pred EEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH------
Q 000923 637 IMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT------ 709 (1222)
Q Consensus 637 IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~------ 709 (1222)
|+|++|+|||||+++|++..+. .+...+.|.......+.+.. ...++||||||+..+.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP---------------LGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC---------------CCcEEEEECCCCCccccchhhH
Confidence 5899999999999999876654 34444445444333322211 2459999999987664
Q ss_pred -HHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 710 -NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 710 -~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
......++.+|++|+|+|+.......+..++..+...++|+|||+||+|+... ....
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------~~~~---------------- 123 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE------EEEE---------------- 123 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh------hhHH----------------
Confidence 34445778899999999999987777766667777789999999999999731 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.......... .....++++++||.+|.|+.+++++|..+
T Consensus 124 ---~~~~~~~~~~----------~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 124 ---ELLELRLLIL----------LLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred ---HHHHHHHhhc----------ccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 0000000000 11245799999999999999999988754
No 205
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.57 E-value=1.5e-14 Score=153.29 Aligned_cols=166 Identities=14% Similarity=0.181 Sum_probs=105.1
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|+.++|||||+.+++...+.......+...+ ...+..++ ....+.||||+|++.|..++.
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~--------------~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDG--------------NTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECC--------------EEEEEEEEECCCCccccccch
Confidence 599999999999999999998777543333221111 01111111 013489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHH--HHHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~--e~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.+++.+|++|||+|.++....+.. .++..++. .++|+|||.||+|+.... . . +..+.. .+. . .
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~----~--~---~~~~~~-~~~-v--~ 134 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDK----Q--Y---LADHPG-ASP-I--T 134 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccCh----h--h---hhhccC-CCC-C--C
Confidence 999999999999999875554443 24444543 378999999999995310 0 0 000000 000 0 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
........... +..+++.+||++|.||.+++..++..+
T Consensus 135 ~~~~~~~a~~~--------------~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 135 TAQGEELRKQI--------------GAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHHHHHHHHHc--------------CCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 00011111111 123699999999999999999988643
No 206
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.57 E-value=1.3e-14 Score=151.23 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=101.7
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|++|+|||||+++|++..+.....+.+..... ..+.... ....+.|||||||..|..++.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS-ATVTVDG--------------KQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECC--------------EEEEEEEEeCCCcccccccch
Confidence 5899999999999999999987764333222222111 1111111 012389999999999887777
Q ss_pred hhcccCceeEEEecccCCCChhH--HHHHHHHHhc--CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQT--IESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT--~e~l~~lk~~--~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..+..+|++|+|+|+++....+. ..++..+... ++|+|||+||+|+...+. ....+......+ .
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~~~~~~~v------~ 134 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN------TLKKLEKGKEPI------T 134 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh------hhhhcccCCCcc------C
Confidence 78889999999999987433222 2233344333 599999999999974210 000000000000 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
.......+... +..+++++||++|.||.+++..|+.
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 135 PEEGEKLAKEI--------------GAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHHHh--------------CCeEEEEeecCCCCCHHHHHHHHhh
Confidence 00111111111 2348999999999999999988864
No 207
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=1.5e-14 Score=157.70 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=103.9
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
+.|+|+|..++|||||+++|++..+......+++.++....+..... ....|.||||||+..|..++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~-------------~~~~l~i~Dt~G~~~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPG-------------VRIKLQLWDTAGQERFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCC-------------CEEEEEEEeCCcchhHHHHH
Confidence 56999999999999999999977664433233332222211111100 00248999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHH-HHHHHH----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
...+..+|++|||+|+++........ ++..+. ...+|+||++||+|+.... .+.
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~------~v~--------------- 128 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR------QVT--------------- 128 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc------ccC---------------
Confidence 89999999999999998742222111 222222 2356789999999986310 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 844 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~ 844 (1222)
......+... ++ ++++++||++|.||.+++.+|...+...
T Consensus 129 ---~~~~~~~~~~------------~~--~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 129 ---REEAEKLAKD------------LG--MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred ---HHHHHHHHHH------------hC--CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0000111110 11 5899999999999999999998766544
No 208
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.57 E-value=1.2e-14 Score=152.26 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=99.5
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|..++|||||+++|.+. +... ....+|...... .+....++||||||+..|..++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~----~~~t~g~~~~~~--------------~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKK----VAPTVGFTPTKL--------------RLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCcc----ccCcccceEEEE--------------EECCEEEEEEECCCcHHHHHHHH
Confidence 3899999999999999999865 2211 111222211110 01123489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChh-HHHHHHHHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~q-T~e~l~~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
.++..||++|+|||+++....+ ....+..+.. .++|++||+||+|+.... +
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~------------------ 117 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL------L------------------ 117 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC------C------------------
Confidence 9999999999999998743222 2333443332 378999999999996321 0
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCC------CChhhHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG------EGIPDLLLLLV 838 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tG------eGI~eLl~~i~ 838 (1222)
...+...+.-..+. ...+..++++++||++| .||.+.|+||.
T Consensus 118 -~~~i~~~~~l~~~~-------~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 118 -GADVIEYLSLEKLV-------NENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred -HHHHHHhcCccccc-------CCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 01111111100110 01123568999999998 89999999885
No 209
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.57 E-value=1.2e-14 Score=153.45 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=103.4
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|++|+|||||+++|+...+.....+++.... ...+..... ...+.||||||+..|..++.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--------------~~~~~l~D~~g~~~~~~~~~ 67 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQ--------------DYHLEIVDTAGQDEYSILPQ 67 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCE--------------EEEEEEEECCChHhhHHHHH
Confidence 599999999999999999997665433322221111 111111110 12378999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHH-H---hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~l-k---~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
.++..+|++|+|+|+++....+....| ..+ . ..++|+|+|+||+|+...+ .+.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------~~~---------------- 125 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR------QVS---------------- 125 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC------ccC----------------
Confidence 999999999999999986544443332 222 2 2467999999999986210 000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
...+....... + ++++++||++|.|+.+++.+|...+..
T Consensus 126 -~~~~~~~~~~~-------------~--~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 126 -TEEGKELAESW-------------G--AAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred -HHHHHHHHHHc-------------C--CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 00000011111 1 489999999999999999999876643
No 210
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.57 E-value=6.5e-15 Score=153.90 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=77.0
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHh
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 714 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~r 714 (1222)
|+|+|+.++|||||+.+|++..+.... ...+|..+... .+....+.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~----~pt~g~~~~~i--------------~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV----VPTTGFNSVAI--------------PTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccc----cccCCcceEEE--------------eeCCeEEEEEECCCCcchhHHHHH
Confidence 799999999999999999876554322 12222211111 111234899999999999999999
Q ss_pred hcccCceeEEEecccCCCChh-HHHHHHHHH--hcCCceEEEEeeecccc
Q 000923 715 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLK--MRNTEFIVALNKVDRLY 761 (1222)
Q Consensus 715 g~~~aD~aILVVDa~dGv~~q-T~e~l~~lk--~~~vP~IVviNKiDl~~ 761 (1222)
++..+|++|||||+.+..... ....|..+. ..++|+|||+||+|+..
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 999999999999998754222 222333332 24799999999999863
No 211
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.1e-14 Score=146.67 Aligned_cols=165 Identities=19% Similarity=0.167 Sum_probs=120.9
Q ss_pred ccCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh
Q 000923 628 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 707 (1222)
Q Consensus 628 ~~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~ 707 (1222)
...|...|+++|..++||||||.+++...|.......|.+++-...+.+.... ..|.+|||+|++.
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~--------------vrLQlWDTAGQER 83 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT--------------VRLQLWDTAGQER 83 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcE--------------EEEEEEecccHHH
Confidence 34566789999999999999999999988887766667777665555444322 3499999999999
Q ss_pred hHHHHHhhcccCceeEEEecccCCCC-hhHHHHHHHHHhc----CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHH
Q 000923 708 FTNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 782 (1222)
Q Consensus 708 F~~~~~rg~~~aD~aILVVDa~dGv~-~qT~e~l~~lk~~----~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~ 782 (1222)
|..+...+++.+.++|+|+|.++.-. .+|..+|.-++.. ++-+++|.||.||... ..+
T Consensus 84 FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk------rqv----------- 146 (221)
T KOG0094|consen 84 FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK------RQV----------- 146 (221)
T ss_pred HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch------hhh-----------
Confidence 99999999999999999999987433 5666677766654 3557789999999731 000
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHH
Q 000923 783 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 844 (1222)
Q Consensus 783 ~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~ 844 (1222)
...+-.....++ .+.++.+||++|.||..|+..|...++..
T Consensus 147 ------s~eEg~~kAkel---------------~a~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 147 ------SIEEGERKAKEL---------------NAEFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred ------hHHHHHHHHHHh---------------CcEEEEecccCCCCHHHHHHHHHHhccCc
Confidence 001111111222 14789999999999999998887666543
No 212
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=2.9e-14 Score=165.24 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=100.8
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh------
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 707 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~------ 707 (1222)
-|+|||.+|+||||||++|++.........+.|.+.....+.+. ....|+||||||...
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~---------------~~~~~~i~D~PGli~ga~~~~ 224 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD---------------DYKSFVIADIPGLIEGASEGA 224 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC---------------CCcEEEEEeCCCccCCCCccc
Confidence 38999999999999999998765444444444443322222221 113499999999632
Q ss_pred -hHHHHHhhcccCceeEEEecccCCCChhHHHHH-HHHHh-----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhH
Q 000923 708 -FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 780 (1222)
Q Consensus 708 -F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~-----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~ 780 (1222)
+.....+.+..|+++|+|||+++.-..+....| ..+.. .++|+|||+||||++..+ ...
T Consensus 225 gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~------~~~-------- 290 (335)
T PRK12299 225 GLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE------EER-------- 290 (335)
T ss_pred cHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch------hHH--------
Confidence 444556777889999999999864333333333 44443 368999999999986311 000
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 781 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 781 ~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
......+... ..+++|++||++|+||.+|+.+|..++.
T Consensus 291 ----------~~~~~~~~~~--------------~~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 291 ----------EKRAALELAA--------------LGGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred ----------HHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 0000011000 1147999999999999999999987664
No 213
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.56 E-value=1.2e-14 Score=151.42 Aligned_cols=154 Identities=19% Similarity=0.163 Sum_probs=95.4
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh-hHHHHH
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-FTNLRS 713 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~-F~~~~~ 713 (1222)
|+|+|++++|||||+.+|+...+.....+.+ .......+... .....+.||||||+.. |..++.
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~--------------~~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYDPNL-ESLYSRQVTID--------------GEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccccccCCCh-HHhceEEEEEC--------------CEEEEEEEEECCCCcccccchHH
Confidence 8999999999999999998654432211111 11111111111 0112388999999985 455667
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHHH-----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk-----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
+.++.+|++|+|+|+++....+....| ..+. ..++|+|+|+||+|+... ..+.
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~v~--------------- 125 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY------RQVS--------------- 125 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh------CccC---------------
Confidence 788899999999999875443322222 2222 237999999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCC-ChhhHHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 841 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGe-GI~eLl~~i~~~~ 841 (1222)
........... + ++++++||++|. ||.+++..|+..+
T Consensus 126 --~~~~~~~~~~~-------------~--~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 126 --TEEGEKLASEL-------------G--CLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred --HHHHHHHHHHc-------------C--CEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 00000011111 1 489999999994 9999999998654
No 214
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=5.1e-14 Score=144.85 Aligned_cols=158 Identities=23% Similarity=0.314 Sum_probs=116.6
Q ss_pred ccCCCCEEEEEccCCCCchhhhhhhcCCccc-------ccccCc-----eeEeeeeeEeeccccccchhhcccccccccC
Q 000923 628 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-------EGEAGG-----ITQQIGATYFPAENIRERTRELKANATLKVP 695 (1222)
Q Consensus 628 ~~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~-------~~e~~G-----IT~~iga~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1222)
...+..+|+|+|+.++||||++.++...... .....+ +.+++|...+.+ ..
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-----------------~~ 68 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-----------------DT 68 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-----------------cc
Confidence 4467778999999999999999999754321 111111 223344333322 14
Q ss_pred CeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcC-CceEEEEeeeccccCcccCCCchHHHH
Q 000923 696 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDRLYGWKTCRNAPIVKA 774 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~-vP~IVviNKiDl~~~w~~~~~a~i~~~ 774 (1222)
+++|++||||.+|.-|+.-.++.++++|++||.+.+......+.++.+...+ +|++|++||.|+...|..
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~pp--------- 139 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPP--------- 139 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCH---------
Confidence 6999999999999999999999999999999999877766677888888888 999999999999876642
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 775 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 775 l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
..+...|... + ..+|+|+++|..++|+.+.|..+...
T Consensus 140 ----------------e~i~e~l~~~-~------------~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 140 ----------------EKIREALKLE-L------------LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ----------------HHHHHHHHhc-c------------CCCceeeeecccchhHHHHHHHHHhh
Confidence 1122222111 0 24699999999999999988877643
No 215
>PRK11058 GTPase HflX; Provisional
Probab=99.55 E-value=5.6e-14 Score=167.66 Aligned_cols=152 Identities=22% Similarity=0.247 Sum_probs=100.3
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh-----
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 707 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~----- 707 (1222)
|.|+|+|.+|+|||||+|+|++..+......+.|.+.....+.+.. ...++||||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~---------------~~~~~l~DTaG~~r~lp~~ 262 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD---------------VGETVLADTVGFIRHLPHD 262 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC---------------CCeEEEEecCcccccCCHH
Confidence 6799999999999999999998765544444555443322222211 12488999999733
Q ss_pred ----hHHHHHhhcccCceeEEEecccCCCChhHH----HHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 708 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 708 ----F~~~~~rg~~~aD~aILVVDa~dGv~~qT~----e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
|.. +...+..+|++|+|+|+++....... ..+..+...++|+|+|+||||+...+ .
T Consensus 263 lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~------~--------- 326 (426)
T PRK11058 263 LVAAFKA-TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF------E--------- 326 (426)
T ss_pred HHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch------h---------
Confidence 333 23456789999999999886443332 23444444579999999999996310 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 780 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 780 ~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
..+. ....+ ...+|++||++|.||.+|+++|...+.
T Consensus 327 --------~~~~-----~~~~~--------------~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 327 --------PRID-----RDEEN--------------KPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred --------HHHH-----HHhcC--------------CCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0000 00011 112588999999999999999987764
No 216
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.55 E-value=3.6e-14 Score=151.11 Aligned_cols=167 Identities=16% Similarity=0.175 Sum_probs=103.8
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+++|..++|||||+.+|+...+.....+.+...+. ..+.... ....+.||||+|.+.|..++
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~--------------~~~~l~iwDtaG~e~~~~~~ 70 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDT--------------QRIELSLWDTSGSPYYDNVR 70 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECC--------------EEEEEEEEECCCchhhHhhh
Confidence 56999999999999999999877665433222221111 1111111 01248999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHH--HHHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~--e~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..+++.+|++|||+|.++....+.. .++..++. .++|+|||.||+|+... ......+..+... ..
T Consensus 71 ~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~~~~~~~~-----~v 139 (182)
T cd04172 71 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD------LTTLVELSNHRQT-----PV 139 (182)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcC------hhhHHHHHhcCCC-----CC
Confidence 9999999999999999876444442 22334433 26899999999998521 0000000000000 00
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCC-hhhHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQ 839 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeG-I~eLl~~i~~ 839 (1222)
............ +.++++.+||++|.| |.+++..++.
T Consensus 140 ~~~~~~~~a~~~--------------~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 140 SYDQGANMAKQI--------------GAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred CHHHHHHHHHHc--------------CCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 000111111111 224899999999998 9999988775
No 217
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.55 E-value=1.9e-14 Score=147.88 Aligned_cols=154 Identities=18% Similarity=0.102 Sum_probs=99.8
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|++++|||||+++|++..+....... +.+.....+.... ....+.|||||||..|..++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPT-IEDSYRKTIVVDG--------------ETYTLDILDTAGQEEFSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCC-hhHeEEEEEEECC--------------EEEEEEEEECCChHHHHHHHH
Confidence 3899999999999999999876543332221 1111111111110 012488999999999999999
Q ss_pred hhcccCceeEEEecccCCCCh-hHHHHHHHHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEP-QTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~-qT~e~l~~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..+..+|++|+|+|.++.... ....++..+.. .++|++||+||+|+...+ ...
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~------------------ 123 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER----QVS------------------ 123 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc----eec------------------
Confidence 999999999999998764221 12223333322 378999999999986311 000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
...+...+... .++++++||.+|.|+.+++.+|...
T Consensus 124 -~~~~~~~~~~~---------------~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 124 -KEEGKALAKEW---------------GCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred -HHHHHHHHHHc---------------CCcEEEeccCCCCCHHHHHHHHHhh
Confidence 01111112111 1589999999999999999998754
No 218
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.55 E-value=2e-14 Score=182.09 Aligned_cols=153 Identities=24% Similarity=0.297 Sum_probs=109.2
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
.++|+++||+|+|||||+|+|++.+...++..|+|.+.....+.+. ...++||||||+.+|...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~----------------~~~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT----------------DHQVTLVDLPGTYSLTTI 66 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC----------------ceEEEEEECCCccccccc
Confidence 4579999999999999999999887777788888876544433332 235999999999887531
Q ss_pred ----------HHhh--cccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 712 ----------RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 712 ----------~~rg--~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
.... ...+|++|+|||+++.... ...+..+...++|+|+|+||+|+... ..+.
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~--l~l~~ql~e~giPvIvVlNK~Dl~~~------~~i~------- 131 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDASNLERN--LYLTLQLLELGIPCIVALNMLDIAEK------QNIR------- 131 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCCcchhh--HHHHHHHHHcCCCEEEEEEchhhhhc------cCcH-------
Confidence 1112 2468999999999885433 33556777889999999999998521 1110
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 780 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 780 ~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
..+..+...| .+|++++||.+|.|+++|++.+..+.
T Consensus 132 --------id~~~L~~~L------------------G~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 132 --------IDIDALSARL------------------GCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred --------HHHHHHHHHh------------------CCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 0111111111 15899999999999999999887654
No 219
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.55 E-value=5.6e-14 Score=154.91 Aligned_cols=171 Identities=17% Similarity=0.132 Sum_probs=106.0
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
....|+|||..++|||||+.+|+...+.....+.+..... ..+.... ....|.||||||++.|..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~--------------~~v~l~iwDTaG~e~~~~ 76 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEE--------------QRVELSLWDTSGSPYYDN 76 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECC--------------EEEEEEEEeCCCchhhHH
Confidence 4467999999999999999999877665443333322111 0111111 012489999999999999
Q ss_pred HHHhhcccCceeEEEecccCCCChhH--HHHHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQT--IESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~qT--~e~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
++..+++.+|++|||+|+++....+. ..++..++. .++|+|||+||+|+.... .....+..+.. .
T Consensus 77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~------~~~~~l~~~~~---~-- 145 (232)
T cd04174 77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDL------STLMELSNQKQ---A-- 145 (232)
T ss_pred HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc------chhhhhccccC---C--
Confidence 99999999999999999987544432 123344443 368999999999985210 00000000000 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCC-ChhhHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 841 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGe-GI~eLl~~i~~~~ 841 (1222)
..............| ..+++.|||++|. ||.+++..++..+
T Consensus 146 ~Vs~~e~~~~a~~~~--------------~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 146 PISYEQGCALAKQLG--------------AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred cCCHHHHHHHHHHcC--------------CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 000011111111122 1268999999998 8999999887654
No 220
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.55 E-value=2.8e-14 Score=165.20 Aligned_cols=152 Identities=22% Similarity=0.303 Sum_probs=97.6
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCcee--EeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh----
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 707 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT--~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~---- 707 (1222)
-|+|||.+++|||||+++|+..........+.| .+++...+. . ...|+||||||+..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~--~---------------~~~~~i~D~PGli~~a~~ 221 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD--D---------------GRSFVIADIPGLIEGASE 221 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC--C---------------ceEEEEEeCCCcccCCcc
Confidence 489999999999999999987653333333333 334433221 1 13489999999742
Q ss_pred ---hHHHHHhhcccCceeEEEecccCC---CChhHHHHH-HHHHh-----cCCceEEEEeeeccccCcccCCCchHHHHH
Q 000923 708 ---FTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 708 ---F~~~~~rg~~~aD~aILVVDa~dG---v~~qT~e~l-~~lk~-----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
+.....+.+..||++|+|||+++. ...+....| ..+.. .+.|+|||+||||++.. ..
T Consensus 222 ~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~------~~----- 290 (329)
T TIGR02729 222 GAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE------EE----- 290 (329)
T ss_pred cccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh------HH-----
Confidence 344456667789999999999864 111222222 33332 36899999999999631 00
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 776 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 776 ~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
+..+...+... + .+++|++||++|+||.+|+.+|..++
T Consensus 291 --------------~~~~~~~l~~~------------~--~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 291 --------------LAELLKELKKA------------L--GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred --------------HHHHHHHHHHH------------c--CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 01111122111 0 14799999999999999999987654
No 221
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=3.3e-14 Score=167.87 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=101.9
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh------
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 707 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~------ 707 (1222)
-|+|||.+|+||||||++|++.........++|.+.....+.+.. ...|+|+||||+..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~---------------~~~i~~vDtPGi~~~a~~~~ 225 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD---------------ERSFVVADIPGLIEGASEGA 225 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC---------------CcEEEEEeCCCccccccchh
Confidence 489999999999999999987765444455555443333332211 12399999999532
Q ss_pred -hHHHHHhhcccCceeEEEecccC----CCChhHHHHHHHHHhc-----CCceEEEEeeeccccCcccCCCchHHHHHHH
Q 000923 708 -FTNLRSRGSGLCDIAILVVDIMH----GLEPQTIESLNLLKMR-----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 777 (1222)
Q Consensus 708 -F~~~~~rg~~~aD~aILVVDa~d----Gv~~qT~e~l~~lk~~-----~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~ 777 (1222)
....+.+.+..||++|+|||+.. ....+...+++.+..+ +.|+|||+||+|+... ..
T Consensus 226 ~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~------~e------- 292 (390)
T PRK12298 226 GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE------EE------- 292 (390)
T ss_pred hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh------HH-------
Confidence 23344567888999999999872 1122223334444443 5899999999998620 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 778 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 778 q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
+...+..+... ++...++|++||+++.||.+|+..|..+++.
T Consensus 293 ------------l~~~l~~l~~~------------~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 293 ------------AEERAKAIVEA------------LGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred ------------HHHHHHHHHHH------------hCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 01111111111 0112378999999999999999999887653
No 222
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.55 E-value=5.5e-14 Score=149.19 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=79.9
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|..++|||||+.+|+...+.....+.+..... ..+.... ....+.||||||++.|..++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~iwDt~G~~~~~~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDE--------------QRIELSLWDTSGSPYYDNVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECC--------------EEEEEEEEECCCchhhhhcc
Confidence 36999999999999999999877665433333321111 1111111 01248999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHH--HHHHHHHh--cCCceEEEEeeeccc
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRL 760 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~--e~l~~lk~--~~vP~IVviNKiDl~ 760 (1222)
..+++.+|++|||+|.++..+.+.. .++..++. .++|+|||.||+|+.
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 9999999999999999875444432 23334443 368999999999985
No 223
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.55 E-value=1e-14 Score=153.13 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=101.7
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
...|+|+|..|+|||||+.+|++..+. ....+.+..+.....+.+.+.. ..+.||||+|+..|..
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~--------------~~l~~~d~~g~~~~~~ 69 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQE--------------KYLILREVGEDEVAIL 69 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeE--------------EEEEEEecCCcccccc
Confidence 356999999999999999999987765 3333333222221112211110 2388999999999988
Q ss_pred HHHhhcccCceeEEEecccCCCChhHH-HHHHHHH-hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk-~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
++..++..+|++|||+|+++....+.. +++..+. ..++|+|+|+||+|+...... .. .
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~-----~~---------------~ 129 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQR-----YE---------------V 129 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccc-----cc---------------c
Confidence 888889999999999999774221111 2233332 237999999999998631100 00 0
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
....+ ....++ .+++++||++|.|+.+|+..|...+
T Consensus 130 ~~~~~---~~~~~~--------------~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 130 QPDEF---CRKLGL--------------PPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CHHHH---HHHcCC--------------CCCEEEEeccCccHHHHHHHHHHHh
Confidence 00011 011111 1458999999999999999887654
No 224
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.55 E-value=1.8e-14 Score=150.70 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=94.3
Q ss_pred EEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh-------H
Q 000923 637 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-------T 709 (1222)
Q Consensus 637 IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F-------~ 709 (1222)
|+|++|+|||||+++|++..+......+.|.+.....+.+.. ...+.||||||+... .
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~i~DtpG~~~~~~~~~~~~ 65 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD---------------GARIQVADIPGLIEGASEGRGLG 65 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC---------------CCeEEEEeccccchhhhcCCCcc
Confidence 589999999999999988765334444555443322222210 245899999997432 2
Q ss_pred HHHHhhcccCceeEEEecccCCC-----Ch-hHH-HHHHHHH----------hcCCceEEEEeeeccccCcccCCCchHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGL-----EP-QTI-ESLNLLK----------MRNTEFIVALNKVDRLYGWKTCRNAPIV 772 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv-----~~-qT~-e~l~~lk----------~~~vP~IVviNKiDl~~~w~~~~~a~i~ 772 (1222)
....+.+..+|++|+|+|+.+.. .+ ... .++..+. ..+.|+++|+||+|+... ..
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------~~-- 137 (176)
T cd01881 66 NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA------EE-- 137 (176)
T ss_pred HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch------hH--
Confidence 22345677899999999998763 11 111 1222222 147899999999999631 00
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 773 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 773 ~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
+......... .....+++++||++|.|+.+|++.|+.+
T Consensus 138 -----------------~~~~~~~~~~-------------~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 138 -----------------LEEELVRELA-------------LEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred -----------------HHHHHHHHHh-------------cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 0000000000 0123579999999999999999988654
No 225
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.55 E-value=1.7e-14 Score=173.93 Aligned_cols=146 Identities=24% Similarity=0.283 Sum_probs=105.5
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
.++|+|+|++|+|||||+++|++..+ ......|+|.++....+.+. ...++||||||+..+..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~----------------g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD----------------GIPLRLIDTAGIRETDD 278 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC----------------CeEEEEEeCCCCCCCcc
Confidence 35699999999999999999998664 23445666665544333332 23489999999876543
Q ss_pred H--------HHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHH
Q 000923 711 L--------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 782 (1222)
Q Consensus 711 ~--------~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~ 782 (1222)
. ....+..+|++|+|||++++...+....|.. ..++|+|+|+||+|+...+ .
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~------~------------ 338 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEI------D------------ 338 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccc------h------------
Confidence 2 3446788999999999998876665555544 4578999999999996310 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 783 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 783 ~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.. . ....+++++||++|.||..|+..|...+
T Consensus 339 -------~~--------~-------------~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 339 -------LE--------E-------------ENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred -------hh--------h-------------ccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 00 0 0124799999999999999999987654
No 226
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=2.5e-14 Score=146.21 Aligned_cols=157 Identities=21% Similarity=0.167 Sum_probs=116.3
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..+++||..|+|||+||.+++...|+.-....|..+.|+..+..+... ..|+||||.||+.|...+
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~--------------IKlqiwDtaGqe~frsv~ 72 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQ--------------IKLQIWDTAGQESFRSVT 72 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCce--------------EEEEEEecCCcHHHHHHH
Confidence 468999999999999999999888877666777778888776655432 249999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHHH-HHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..+++.+-++|||+|++..-+...+.+| .-+++ .++-++++.||+||... ..+
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r------R~V----------------- 129 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR------REV----------------- 129 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc------ccc-----------------
Confidence 9999999999999999875444333333 33443 46779999999999631 010
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.-.+--....++|| .++.+||+|++||.+.+..+...+
T Consensus 130 s~EEGeaFA~ehgL---------------ifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 130 SKEEGEAFAREHGL---------------IFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred cHHHHHHHHHHcCc---------------eeehhhhhhhhhHHHHHHHHHHHH
Confidence 01122223344553 678999999999999887665433
No 227
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=5.1e-14 Score=168.97 Aligned_cols=155 Identities=20% Similarity=0.240 Sum_probs=99.6
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh------
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 707 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~------ 707 (1222)
.|+|||.+|+||||||++|++.........++|.++....+.+. ...|+|+||||...
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~----------------~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG----------------DTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC----------------CeEEEEEECCCCccccchhh
Confidence 48999999999999999998766544445555544333333222 13499999999531
Q ss_pred -hHHHHHhhcccCceeEEEecccCC---CCh-hHHHHH-----HHH----------HhcCCceEEEEeeeccccCcccCC
Q 000923 708 -FTNLRSRGSGLCDIAILVVDIMHG---LEP-QTIESL-----NLL----------KMRNTEFIVALNKVDRLYGWKTCR 767 (1222)
Q Consensus 708 -F~~~~~rg~~~aD~aILVVDa~dG---v~~-qT~e~l-----~~l----------k~~~vP~IVviNKiDl~~~w~~~~ 767 (1222)
......+.+..||++|+|||+++. ..+ ..+..| .++ ...+.|+|||+||+|++..
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da----- 299 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA----- 299 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-----
Confidence 223345677889999999999752 111 112211 122 1246899999999998621
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 768 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 768 ~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
.. + ...+...+... .++||+|||++|.||.+|+.+|..++..
T Consensus 300 -~e-----------l-------~e~l~~~l~~~---------------g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 300 -RE-----------L-------AEFVRPELEAR---------------GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred -HH-----------H-------HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 00 0 00111122211 2489999999999999999999877654
No 228
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.54 E-value=1.4e-14 Score=147.80 Aligned_cols=161 Identities=21% Similarity=0.215 Sum_probs=113.4
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
.+.|+|+|.+|+|||||++++....+....... ||+.++..+... +-....+.||||.|++.|..+
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaT----IgadFltKev~V----------d~~~vtlQiWDTAGQERFqsL 74 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKAT----IGADFLTKEVQV----------DDRSVTLQIWDTAGQERFQSL 74 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccc----cchhheeeEEEE----------cCeEEEEEEEecccHHHhhhc
Confidence 357999999999999999999987765543333 344333322110 001123899999999999999
Q ss_pred HHhhcccCceeEEEecccCCCChhHHHHHH--HHHhc------CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEPQTIESLN--LLKMR------NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 783 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~qT~e~l~--~lk~~------~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~ 783 (1222)
....++.+|+++||+|.++.-...+++.|+ .+... .-||||+.||+|+..+-. +
T Consensus 75 g~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~--r---------------- 136 (210)
T KOG0394|consen 75 GVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS--R---------------- 136 (210)
T ss_pred ccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc--c----------------
Confidence 999999999999999999876666776664 33333 359999999999863200 0
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 784 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 784 ~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.............. +.+|+|.+||+.+.||.+.+..+.+..
T Consensus 137 ---~VS~~~Aq~WC~s~--------------gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 137 ---QVSEKKAQTWCKSK--------------GNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred ---eeeHHHHHHHHHhc--------------CCceeEEecccccccHHHHHHHHHHHH
Confidence 00011222233332 468999999999999999998887654
No 229
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.54 E-value=1.1e-14 Score=156.52 Aligned_cols=136 Identities=22% Similarity=0.328 Sum_probs=91.8
Q ss_pred CeEeecCCCchhhHHHHHhh--------cccCceeEEEecccCCCChhHHHH-----HHHHHhcCCceEEEEeeeccccC
Q 000923 696 GLLVIDTPGHESFTNLRSRG--------SGLCDIAILVVDIMHGLEPQTIES-----LNLLKMRNTEFIVALNKVDRLYG 762 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg--------~~~aD~aILVVDa~dGv~~qT~e~-----l~~lk~~~vP~IVviNKiDl~~~ 762 (1222)
.+.||||||+..-......| ....-++++|||......|.|..+ ..+|...++|+|||.||+|+.
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~-- 194 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS-- 194 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc--
Confidence 48999999965422222222 223456889999887777777643 355667799999999999997
Q ss_pred cccCCCchHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 763 WKTCRNAPIVKAIKQQNTDVQNEFNM-RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 763 w~~~~~a~i~~~l~~q~~~~~~~~~~-~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...|...+....+..++.+.. .-..+...+....|..+.||+ .+.+|.||+.||.|+++++..+...+
T Consensus 195 -----d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~------~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 195 -----DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYR------SLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHh------hCceEEEecccCCcHHHHHHHHHHHH
Confidence 466777777766666555553 111223333444455566664 46899999999999999998887665
Q ss_pred HHH
Q 000923 842 QKT 844 (1222)
Q Consensus 842 ~~~ 844 (1222)
..+
T Consensus 264 dEy 266 (366)
T KOG1532|consen 264 DEY 266 (366)
T ss_pred HHH
Confidence 443
No 230
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.53 E-value=3.2e-14 Score=149.66 Aligned_cols=165 Identities=13% Similarity=0.162 Sum_probs=100.8
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+|+|+.++|||||+.+++...+.....+.+ .+.....+.... ....+.||||||+..|..++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDG--------------KPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECC--------------EEEEEEEEECCCChhhccccc
Confidence 58999999999999999998765543222211 111111111111 012488999999999999988
Q ss_pred hhcccCceeEEEecccCCCChhHH--HHHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~--e~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.+++.+|++|+|+|+.+....+.. .++..+.. .++|+|+++||+|+... ......+...... ...
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~-----~v~ 135 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD------VNVLIQLARYGEK-----PVS 135 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC------hhHHHHHhhcCCC-----CcC
Confidence 899999999999999875433322 33444443 36899999999998621 1100000000000 000
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
........... +..+++++||++|.||.+|++.++
T Consensus 136 ~~~~~~~a~~~--------------~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 136 QSRAKALAEKI--------------GACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 00111111111 224899999999999999998775
No 231
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.53 E-value=1.5e-13 Score=141.76 Aligned_cols=153 Identities=24% Similarity=0.344 Sum_probs=100.4
Q ss_pred EEEEccCCCCchhhhhhhcCCccc--ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh-----
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 707 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~--~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~----- 707 (1222)
|+|+|++|+|||||++.|++..+. .....+.|..+..+.+ . ..++||||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-----------------~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-----------------DKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-----------------CeEEEecCCCccccccCH
Confidence 799999999999999999843322 2222233333221111 1 1499999999643
Q ss_pred -----hHHHHHhhc---ccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhh
Q 000923 708 -----FTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 779 (1222)
Q Consensus 708 -----F~~~~~rg~---~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~ 779 (1222)
|..+...++ ..++++++|+|.....+......+..+...+.|+++++||+|+... ..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~------~~--------- 127 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK------SE--------- 127 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh------HH---------
Confidence 333333333 3467899999998887777778888888889999999999998631 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 780 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 780 ~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.......+...+... ....+++++||++|.|+.+++++|..+
T Consensus 128 ------~~~~~~~~~~~l~~~-------------~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 128 ------LAKALKEIKKELKLF-------------EIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred ------HHHHHHHHHHHHHhc-------------cCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 000011111112110 134689999999999999999998764
No 232
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=8.8e-14 Score=146.28 Aligned_cols=161 Identities=20% Similarity=0.147 Sum_probs=113.0
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
+..+|+++|..++|||+|+.+|....+.......|.+++....+.....+ ..+.+|||.|++.|.+
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~--------------i~lQiWDtaGQerf~t 76 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKK--------------IKLQIWDTAGQERFRT 76 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeE--------------EEEEEEEcccchhHHH
Confidence 45679999999999999999998777665554445555444444333321 3499999999999999
Q ss_pred HHHhhcccCceeEEEecccCCCChhHHH-HHHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
+...+++.++++|||+|.++.....-+. ++..+.. .++|+|+|.||+|+... +. +..+.
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~----R~-------------V~~e~ 139 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK----RQ-------------VSKER 139 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc----cc-------------ccHHH
Confidence 9999999999999999998754332222 2333333 37999999999998621 00 11111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
.+ ....++| ++++.+||++|.||.+.+..|...+..
T Consensus 140 ge------~lA~e~G---------------~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 140 GE------ALAREYG---------------IKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred HH------HHHHHhC---------------CeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 11 1222333 589999999999999998888765543
No 233
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.52 E-value=8.1e-14 Score=165.41 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=98.3
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh------
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 707 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~------ 707 (1222)
-|+|+|.+|+||||||++|++.........++|.+.....+.+.. ...|+||||||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~---------------~~~~~laD~PGliega~~~~ 224 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD---------------GRSFVMADIPGLIEGASEGV 224 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC---------------CceEEEEECCCCcccccccc
Confidence 599999999999999999997664433444445443322222210 13499999999632
Q ss_pred -hHHHHHhhcccCceeEEEecccCC--CCh-hH-HHHHHHHHh-----cCCceEEEEeeeccccCcccCCCchHHHHHHH
Q 000923 708 -FTNLRSRGSGLCDIAILVVDIMHG--LEP-QT-IESLNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 777 (1222)
Q Consensus 708 -F~~~~~rg~~~aD~aILVVDa~dG--v~~-qT-~e~l~~lk~-----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~ 777 (1222)
+.....+.+..|+++|+|||+++. ..+ .. ..++..|.. .++|+|||+||||+.. ..
T Consensus 225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-------~~------- 290 (424)
T PRK12297 225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-------AE------- 290 (424)
T ss_pred hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-------CH-------
Confidence 233445667779999999999753 122 22 223334443 3689999999999841 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 778 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 778 q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
..+..+...+ + .++|++||++|+||.+|+.+|..++.
T Consensus 291 ----------e~l~~l~~~l----------------~--~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 291 ----------ENLEEFKEKL----------------G--PKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred ----------HHHHHHHHHh----------------C--CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0011111111 1 37999999999999999999987654
No 234
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.51 E-value=5.6e-14 Score=141.80 Aligned_cols=136 Identities=26% Similarity=0.321 Sum_probs=98.0
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCC----chhhH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFT 709 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPG----he~F~ 709 (1222)
+|.|||.+++|||||+.+|.+...... -||.+... =.+||||| +..|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~----KTq~i~~~------------------------~~~IDTPGEyiE~~~~y 54 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK----KTQAIEYY------------------------DNTIDTPGEYIENPRFY 54 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC----ccceeEec------------------------ccEEECChhheeCHHHH
Confidence 499999999999999999987554322 23333211 24699999 56666
Q ss_pred HHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
......+..||+++||+|++.... ...-..+..++.|+|=||||+|+... ...
T Consensus 55 ~aLi~ta~dad~V~ll~dat~~~~---~~pP~fa~~f~~pvIGVITK~Dl~~~------------------------~~~ 107 (143)
T PF10662_consen 55 HALIVTAQDADVVLLLQDATEPRS---VFPPGFASMFNKPVIGVITKIDLPSD------------------------DAN 107 (143)
T ss_pred HHHHHHHhhCCEEEEEecCCCCCc---cCCchhhcccCCCEEEEEECccCccc------------------------hhh
Confidence 666667778999999999987532 11224455678899999999999721 123
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
+......|...|+. .+|++|+.+|+||.+|.++|.
T Consensus 108 i~~a~~~L~~aG~~--------------~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 108 IERAKKWLKNAGVK--------------EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHHHcCCC--------------CeEEEECCCCcCHHHHHHHHh
Confidence 44555667766653 579999999999999988763
No 235
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.51 E-value=7.6e-14 Score=151.25 Aligned_cols=187 Identities=15% Similarity=0.155 Sum_probs=108.2
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
|.|+|+|++++|||||+.+|+...+.... ..++..+..+.+... .....+.|||||||..|..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~~~~~--------------~~~~~~~l~D~pG~~~~~~~~ 65 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFILNSE--------------GKGKKFRLVDVPGHPKLRDKL 65 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEEeecC--------------CCCceEEEEECCCCHHHHHHH
Confidence 46999999999999999999876543321 222233322222110 012349999999999999988
Q ss_pred HhhcccC-ceeEEEecccCCCC--hhHHHHHHHH----H--hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHH
Q 000923 713 SRGSGLC-DIAILVVDIMHGLE--PQTIESLNLL----K--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 783 (1222)
Q Consensus 713 ~rg~~~a-D~aILVVDa~dGv~--~qT~e~l~~l----k--~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~ 783 (1222)
..++..+ +++|+|||+.+... ..+.++|..+ . ..++|++||+||+|+.... +...+...|..++..++
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~---~~~~i~~~le~ei~~~~ 142 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK---PAKKIKEQLEKELNTLR 142 (203)
T ss_pred HHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC---CHHHHHHHHHHHHHHHH
Confidence 8889888 99999999987521 2233333221 1 1479999999999987421 12223333333333333
Q ss_pred HHHHHHHHHHHHHHHHc----CCchhhhhccccCCCceeEEEcCCCCCC-ChhhHHHHHH
Q 000923 784 NEFNMRLVQIVTQLKEQ----GMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLV 838 (1222)
Q Consensus 784 ~~~~~~l~~i~~~L~e~----gl~~e~~~~~~~~g~~v~vvpvSA~tGe-GI~eLl~~i~ 838 (1222)
......+......-... |.... .+.-......+.|+.+|+..+. ||..+..||.
T Consensus 143 ~~r~~~l~~~~~~~~~~~~~~~~~~~-~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~ 201 (203)
T cd04105 143 ESRSKSLSSLDGDEGSKESLGDKGGK-SFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWID 201 (203)
T ss_pred HHHhccccccccccccccccccccCc-ceeeccCceeEEEEEeEEecCCCChHhHHHHHh
Confidence 22221111110000000 00000 0011123467899999999876 5888877774
No 236
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.50 E-value=9.8e-14 Score=152.37 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=94.9
Q ss_pred EEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
.|+|+|.+|+|||||+.+|+...+. ......+..+.....+.+.. ....++||||||+..+. +
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~i~Dt~G~~~~~--~ 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG--------------EESTLVVIDHWEQEMWT--E 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC--------------EEEEEEEEeCCCcchHH--H
Confidence 5999999999999999999766553 11111111111111111111 11348999999998442 3
Q ss_pred Hhhcc-cCceeEEEecccCCCChhH-HHHHHHHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 713 SRGSG-LCDIAILVVDIMHGLEPQT-IESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 713 ~rg~~-~aD~aILVVDa~dGv~~qT-~e~l~~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
...+. .+|++|||+|+++...... ..++..+.. .++|+|||+||+|+.... .+.
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~------~v~-------------- 125 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR------EVS-------------- 125 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccc------eec--------------
Confidence 33455 8999999999987533222 223333333 368999999999986310 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.... ..+... ..++++++||++|.||.+++++|+..+.
T Consensus 126 ---~~~~-~~~a~~--------------~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 126 ---VQEG-RACAVV--------------FDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred ---HHHH-HHHHHH--------------cCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 0000 011110 1247899999999999999999987654
No 237
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.50 E-value=1.4e-13 Score=151.02 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=79.1
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|||..++|||||+.+|+...+.....+++..... ..+..... ...|.||||+|+..|..++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~--------------~v~L~iwDt~G~e~~~~l~ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKR--------------RIELNMWDTSGSSYYDNVR 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCE--------------EEEEEEEeCCCcHHHHHHh
Confidence 36999999999999999999877665443333322211 11111110 1248999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHH-HHHH-HHHh--cCCceEEEEeeeccc
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTI-ESLN-LLKM--RNTEFIVALNKVDRL 760 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~-e~l~-~lk~--~~vP~IVviNKiDl~ 760 (1222)
..++..+|++|||+|+++....+.. ..|. .++. .++|+|||+||+|+.
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 9999999999999999875333222 2232 2222 368999999999986
No 238
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=6.9e-14 Score=164.05 Aligned_cols=119 Identities=26% Similarity=0.382 Sum_probs=93.6
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCccccc-----------------ccCceeEeeeeeEeeccccccchhhcccccc
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-----------------EAGGITQQIGATYFPAENIRERTRELKANAT 691 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~-----------------e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~ 691 (1222)
.+|+ |+++||-.||||+|++.|........ ..+|++++.....+-....+
T Consensus 127 ~irn--V~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~----------- 193 (971)
T KOG0468|consen 127 RIRN--VGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSK----------- 193 (971)
T ss_pred eEEE--EEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCc-----------
Confidence 3455 99999999999999999975433221 12444444333322222111
Q ss_pred cccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 692 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 692 ~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
-+..-++|+|||||.+|...+.+.++.+|++|||||+.+|++-+|...|+++-+.++|++||+||+|++
T Consensus 194 ~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 194 GKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred CceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 122459999999999999999999999999999999999999999999999999999999999999985
No 239
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.49 E-value=1.4e-13 Score=165.19 Aligned_cols=149 Identities=21% Similarity=0.242 Sum_probs=104.8
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
.+.|+|+|++|+|||||+++|++... ......|+|.++....+.+.+ ..++||||||+..+..
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g----------------~~v~l~DTaG~~~~~~ 266 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG----------------ILIKLLDTAGIREHAD 266 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC----------------EEEEEeeCCCcccchh
Confidence 35699999999999999999997653 234456777765444433322 3489999999865432
Q ss_pred --------HHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHH
Q 000923 711 --------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 782 (1222)
Q Consensus 711 --------~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~ 782 (1222)
....++..+|++|+|+|++++...... ++..+...++|+|+|+||+|+... +.
T Consensus 267 ~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-------~~----------- 327 (442)
T TIGR00450 267 FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-------SL----------- 327 (442)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-------ch-----------
Confidence 234567889999999999987766555 566666678999999999998620 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 783 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 783 ~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
. .+.. . ..++++++||++ .||.++++.|...+.
T Consensus 328 --------~----~~~~-~-------------~~~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 328 --------E----FFVS-S-------------KVLNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred --------h----hhhh-h-------------cCCceEEEEEec-CCHHHHHHHHHHHHH
Confidence 0 0100 0 013788999998 599999988876543
No 240
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.49 E-value=6.7e-14 Score=148.06 Aligned_cols=155 Identities=25% Similarity=0.252 Sum_probs=106.1
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeee--eEeeccccccchhhcccccccccCCeEeecCCCchhh
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGA--TYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 708 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga--~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F 708 (1222)
+...|+|+|..++|||||+.+|....+.. +...+|. ..+.+ ....++|||.+|+..|
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~----------------~~~~~~~~d~gG~~~~ 71 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY----------------KGYSLTIWDLGGQESF 71 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE----------------TTEEEEEEEESSSGGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee----------------CcEEEEEEeccccccc
Confidence 44669999999999999999997654332 1222221 12222 2234999999999999
Q ss_pred HHHHHhhcccCceeEEEecccCCC-ChhHHHHHHHHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHH
Q 000923 709 TNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 783 (1222)
Q Consensus 709 ~~~~~rg~~~aD~aILVVDa~dGv-~~qT~e~l~~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~ 783 (1222)
...+..++..+|++|+|||+++.- .....+.|..+.. .++|++|++||+|+.... +
T Consensus 72 ~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~------~------------- 132 (175)
T PF00025_consen 72 RPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM------S------------- 132 (175)
T ss_dssp GGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS------T-------------
T ss_pred cccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc------h-------------
Confidence 999999999999999999998742 2334444433322 378999999999987321 0
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 784 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 784 ~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
...+...|....+. ....+.++++||.+|+||.+.++||...
T Consensus 133 ------~~~i~~~l~l~~l~---------~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 133 ------EEEIKEYLGLEKLK---------NKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp ------HHHHHHHTTGGGTT---------SSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ------hhHHHhhhhhhhcc---------cCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 11222222111111 1356899999999999999999999764
No 241
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.46 E-value=5e-13 Score=145.89 Aligned_cols=158 Identities=17% Similarity=0.145 Sum_probs=102.4
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~ 709 (1222)
.....|+|+|+.|+|||||+++++...+......++...+....+.... ....+.+|||||+..|.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~i~i~~~Dt~g~~~~~ 72 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNC--------------GPICFNVWDTAGQEKFG 72 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC--------------eEEEEEEEECCCchhhh
Confidence 3446799999999999999987765554432222222222211111110 11248999999999999
Q ss_pred HHHHhhcccCceeEEEecccCCCChhHHHHH-HHHH--hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk--~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
.++..++..++++|+|+|.++....++...| ..+. ..++|+++++||+|+... ...
T Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~-------~~~-------------- 131 (215)
T PTZ00132 73 GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDR-------QVK-------------- 131 (215)
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc-------cCC--------------
Confidence 9988888899999999999876655444333 2222 236899999999998521 000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
......+.. ..+.++++||++|.|+..++.+|.+.+
T Consensus 132 ----~~~~~~~~~---------------~~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 132 ----ARQITFHRK---------------KNLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred ----HHHHHHHHH---------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000111111 124789999999999999888877543
No 242
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.46 E-value=3e-13 Score=135.18 Aligned_cols=151 Identities=25% Similarity=0.238 Sum_probs=99.1
Q ss_pred EEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHhhc
Q 000923 637 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 716 (1222)
Q Consensus 637 IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~ 716 (1222)
|+|++++|||||+++|++.............+.....+.... ....++||||||+..+.......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDG--------------KKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECC--------------EEEEEEEEecCChHHHHhHHHHHh
Confidence 589999999999999987665211111111222222211110 113499999999999988888888
Q ss_pred ccCceeEEEecccCCCChhHHHHH-----HHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHH
Q 000923 717 GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 791 (1222)
Q Consensus 717 ~~aD~aILVVDa~dGv~~qT~e~l-----~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~ 791 (1222)
..+|++|+|+|+.++........+ ......++|+||++||+|+... ...... .
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~-------~~~~~~---------------~ 124 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE-------RVVSEE---------------E 124 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc-------cchHHH---------------H
Confidence 999999999999987655555443 2334458999999999998631 000000 0
Q ss_pred HHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 792 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 792 ~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
....+.. ...++++++|+.+|.|+..++.+|.
T Consensus 125 -~~~~~~~--------------~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 125 -LAEQLAK--------------ELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred -HHHHHHh--------------hcCCcEEEEecCCCCChHHHHHHHh
Confidence 0001111 1346899999999999999998874
No 243
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.45 E-value=4.2e-13 Score=143.26 Aligned_cols=165 Identities=19% Similarity=0.155 Sum_probs=98.1
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|+.|+|||||+++|....+.......+...+. ..+.... ....+.+|||||+..|..++.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~g~~~~~~~~~ 67 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDG--------------KPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECC--------------EEEEEEEEECCCChhccccch
Confidence 5999999999999999999865554322221111111 0111110 012388999999998877776
Q ss_pred hhcccCceeEEEecccCCCChhHH--HHHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~--e~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..++.+|++|+|++.++.-..+.. .++..++. ..+|+|||+||+|+....... .. ..... +. .
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~--~~--~~~~~--------~~-~ 134 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAK--EE--YRTQR--------FV-P 134 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccc--cc--cccCC--------cC-C
Confidence 778899999999999764333222 13334433 268999999999985310000 00 00000 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
........... +.+++|++||++|.||++++..+...
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 135 IQQGKRVAKEI--------------GAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred HHHHHHHHHHh--------------CCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 00010111111 23479999999999999999988753
No 244
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.45 E-value=3.6e-13 Score=139.40 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=103.6
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
+|+|+|+.++|||||+.+|.+..+.......+..+.....+..... ...+.||||||+..|..++.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~g~~~~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGK--------------PVNLEIWDTSGQERFDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTE--------------EEEEEEEEETTSGGGHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccc--------------cccccccccccccccccccc
Confidence 4899999999999999999877665443333322322222222211 12499999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHH-HHHHH---hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~-l~~lk---~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
..+..+|++|||+|.++.-.-..... +..+. ...+|+||+.||+|+...+ ..+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~----~v~------------------- 123 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER----EVS------------------- 123 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS----SSC-------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccccc----cch-------------------
Confidence 99999999999999987432222222 22222 2258999999999986311 000
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...+....... + ++++.+||++|.||.+++..++..+
T Consensus 124 ~~~~~~~~~~~--------------~-~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 124 VEEAQEFAKEL--------------G-VPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHT--------------T-SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHh--------------C-CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 01111122221 2 6999999999999999998887644
No 245
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.44 E-value=2.7e-13 Score=168.25 Aligned_cols=146 Identities=25% Similarity=0.298 Sum_probs=103.2
Q ss_pred ccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH------H
Q 000923 639 GHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL------R 712 (1222)
Q Consensus 639 G~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~------~ 712 (1222)
|.+|+|||||+++|++.++..+...|+|.+.....+.+.+ ..++||||||+.+|... +
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~----------------~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG----------------EDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC----------------eEEEEEECCCccccCccchHHHHH
Confidence 8899999999999998887777888998877655544332 24899999999887542 2
Q ss_pred Hhh--cccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000923 713 SRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 790 (1222)
Q Consensus 713 ~rg--~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l 790 (1222)
... ...+|++|+|+|+++. ......+..+...++|+|+|+||+|+... ..+ ...
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~------~~i---------------~~d- 120 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEK------KGI---------------RID- 120 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHh------CCC---------------hhh-
Confidence 222 2468999999999873 23344455566679999999999998521 000 000
Q ss_pred HHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 791 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 791 ~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...|.+. -.+|++++||++|.|++++++.+....
T Consensus 121 ---~~~L~~~--------------lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 121 ---EEKLEER--------------LGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ---HHHHHHH--------------cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 0111111 015899999999999999999998653
No 246
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.43 E-value=2.8e-13 Score=134.97 Aligned_cols=160 Identities=18% Similarity=0.135 Sum_probs=115.6
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~ 709 (1222)
.-.+.|.|||..|+||||||-+|....|.......|..++-...+...+.+ ..+.||||+|++.|.
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~--------------~KlaiWDTAGqErFR 74 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKR--------------LKLAIWDTAGQERFR 74 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCce--------------EEEEEEeccchHhhh
Confidence 344679999999999999999999888887777767777766666655443 349999999999999
Q ss_pred HHHHhhcccCceeEEEecccCCCChhHHHHH-HHHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
.++.++++.+-++|||+|.+..-...-..+| ..+.. .++-.++|.||||.... +-
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~----R~---------------- 134 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE----RV---------------- 134 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc----cc----------------
Confidence 9999999999999999999875444334444 33333 25567889999997521 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 785 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 785 ~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
-.+ .+-+.....+ .+-|+.+||+|.+|+...++.|+..+
T Consensus 135 --V~r-eEG~kfAr~h---------------~~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 135 --VDR-EEGLKFARKH---------------RCLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred --ccH-HHHHHHHHhh---------------CcEEEEcchhhhccHHHHHHHHHHHH
Confidence 000 0111122222 24789999999999999988876543
No 247
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.8e-12 Score=127.37 Aligned_cols=157 Identities=21% Similarity=0.194 Sum_probs=109.0
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
+.|+++|+.|+|||+|+.+|+.+-|..|....|..++-...+...+.. ..+.||||+|++.|..++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gek--------------iklqiwdtagqerfrsit 73 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEK--------------IKLQIWDTAGQERFRSIT 73 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeE--------------EEEEEeeccchHHHHHHH
Confidence 469999999999999999999888887765555544433333333221 249999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHH-HHHHHHH---hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk---~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
.++++.++.+|||+|++.-...... ++|+.+. ..++--|+|.||+|+.. ...++
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d------rrevp---------------- 131 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD------RREVP---------------- 131 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh------hhhhh----------------
Confidence 9999999999999999875443332 3334443 44677899999999862 11111
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
..+-..+.+. .+.-++.+||+...|+..|+..+.-.+
T Consensus 132 --~qigeefs~~--------------qdmyfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 132 --QQIGEEFSEA--------------QDMYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred --HHHHHHHHHh--------------hhhhhhhhcccchhhHHHHHHHHHHHH
Confidence 1111222221 112367899999999999987776444
No 248
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.42 E-value=8.6e-13 Score=153.66 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=109.3
Q ss_pred CEEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh---h
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---F 708 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~---F 708 (1222)
..|+|+|.||+|||||+|+|++.... .....|+|.++--.++...+ ..+.++||+|... .
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G----------------~pv~l~DTAGiRet~d~ 281 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG----------------IPVRLVDTAGIRETDDV 281 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC----------------EEEEEEecCCcccCccH
Confidence 46999999999999999999987643 34556778776655554443 3499999999543 2
Q ss_pred H-----HHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHH
Q 000923 709 T-----NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 783 (1222)
Q Consensus 709 ~-----~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~ 783 (1222)
. ...+..+..||++++|+|++..+..+....+. +...+.|+|+|+||+|+...|..
T Consensus 282 VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~------------------ 342 (454)
T COG0486 282 VERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIEL------------------ 342 (454)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccccccc------------------
Confidence 1 12334577899999999999987666666666 55667899999999999843210
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 784 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 784 ~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.. + . .....+++++||+||+||+.|.+.|..++.
T Consensus 343 -------~~----~-~-------------~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 343 -------ES----E-K-------------LANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred -------ch----h-h-------------ccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 00 0 0 012348999999999999999998876553
No 249
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.41 E-value=9.9e-13 Score=158.95 Aligned_cols=153 Identities=24% Similarity=0.344 Sum_probs=109.1
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH--
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 710 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~-- 710 (1222)
..|+++|+||+|||||+|+|++.+...++++|+|...-...+.+.. +.++|+|+||..+++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~----------------~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG----------------HEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC----------------ceEEEEeCCCcCCCCCCC
Confidence 4599999999999999999999999999999999887666555433 4599999999665522
Q ss_pred ----HHHhhc--ccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 711 ----LRSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 711 ----~~~rg~--~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
...+++ ..+|++|-|||+++ +.. .....-++...++|+|+++|++|....+ .-
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtn-LeR-nLyltlQLlE~g~p~ilaLNm~D~A~~~----Gi--------------- 126 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATN-LER-NLYLTLQLLELGIPMILALNMIDEAKKR----GI--------------- 126 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccch-HHH-HHHHHHHHHHcCCCeEEEeccHhhHHhc----CC---------------
Confidence 122222 34799999999986 222 2222345567799999999999975210 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 785 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 785 ~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.-....+...| .+|++|+||.+|.|+++|+..+....+
T Consensus 127 --~ID~~~L~~~L------------------GvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 127 --RIDIEKLSKLL------------------GVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred --cccHHHHHHHh------------------CCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 00011111111 269999999999999999999886554
No 250
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.40 E-value=1.1e-12 Score=136.43 Aligned_cols=148 Identities=17% Similarity=0.110 Sum_probs=92.1
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeee--EeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT--YFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~--~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
.|+|+|+.|+|||||+.+++...+..... + ..+.+ .+...+. ...+.||||+|+..+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~---~-~~~~~~~~i~~~~~--------------~~~l~i~D~~g~~~~--- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLES---P-EGGRFKKEVLVDGQ--------------SHLLLIRDEGGAPDA--- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCC---C-CccceEEEEEECCE--------------EEEEEEEECCCCCch---
Confidence 59999999999999999987665433211 1 01111 1111110 123899999999753
Q ss_pred HHhhcccCceeEEEecccCCCChhHH-HHHHHHHh----cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk~----~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
+.+..+|++|||+|.++.-..+.. .++..+.. .++|+|+|.||+|+... ....+. .
T Consensus 61 --~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~----~~~~v~-----------~-- 121 (158)
T cd04103 61 --QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES----NPRVID-----------D-- 121 (158)
T ss_pred --hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc----CCcccC-----------H--
Confidence 345678999999999986555553 33333432 35799999999997410 000000 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
.....|... ...++|++|||++|.||.+++..+..
T Consensus 122 -----~~~~~~~~~-------------~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 122 -----ARARQLCAD-------------MKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred -----HHHHHHHHH-------------hCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 000112111 02358999999999999999988864
No 251
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.8e-12 Score=127.48 Aligned_cols=164 Identities=19% Similarity=0.145 Sum_probs=113.8
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.+.|||+..+|||||+-+.+...+...-.+.+.+++-+..+-.... ...+.||||.|++.|..++.
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~k--------------RiklQiwDTagqEryrtiTT 88 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDK--------------RIKLQIWDTAGQERYRTITT 88 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeeccc--------------EEEEEEEecccchhhhHHHH
Confidence 6999999999999999999887776543333333322221111111 12499999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.+++.+++.||++|+++.-.....+.| -+++. .+.|+|+|.||||+... +-. .
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e----Rvi-------------------s 145 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE----RVI-------------------S 145 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc----eee-------------------e
Confidence 999999999999999875444433333 23333 48999999999998631 000 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL 849 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l 849 (1222)
..+......+.|| .+|.+||+.+.|+..++..++..+-..|.+.+
T Consensus 146 ~e~g~~l~~~LGf---------------efFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl 190 (193)
T KOG0093|consen 146 HERGRQLADQLGF---------------EFFETSAKENINVKQVFERLVDIICDKMSESL 190 (193)
T ss_pred HHHHHHHHHHhCh---------------HHhhhcccccccHHHHHHHHHHHHHHHhhhhh
Confidence 1122223333343 68899999999999999999887777666654
No 252
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.7e-12 Score=135.97 Aligned_cols=161 Identities=17% Similarity=0.138 Sum_probs=114.7
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
+.|+++|.+++|||-||.+|....|.......|...+....+..++. ....+||||.|++.|..+.
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k--------------~vkaqIWDTAGQERyrAit 80 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGK--------------TVKAQIWDTAGQERYRAIT 80 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCc--------------EEEEeeecccchhhhcccc
Confidence 45999999999999999999988887666666665555444333321 1238999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHH-HHHHHHHhc---CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk~~---~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..+++.+-++|||+|++...+.+.. .+|..|+.+ ++++++|.||+||..- +.
T Consensus 81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l-------------ra----------- 136 (222)
T KOG0087|consen 81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL-------------RA----------- 136 (222)
T ss_pred chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc-------------cc-----------
Confidence 9999999999999999875444333 344666654 7899999999999520 00
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 845 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l 845 (1222)
...+-...+.+. ....++.+||+.+.|+...+..++..+-..+
T Consensus 137 V~te~~k~~Ae~--------------~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 137 VPTEDGKAFAEK--------------EGLFFLETSALDATNVEKAFERVLTEIYKIV 179 (222)
T ss_pred cchhhhHhHHHh--------------cCceEEEecccccccHHHHHHHHHHHHHHHH
Confidence 000111112221 2248999999999999999887776554433
No 253
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.4e-12 Score=127.00 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=108.4
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..++|+|+.|+|||+||.+|+...+.......|.+++|...+..... ...+.||||+|++.|...+
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK--------------~vKLQIWDTAGQErFRSVt 75 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGK--------------TVKLQIWDTAGQERFRSVT 75 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCc--------------EEEEEEeecccHHHHHHHH
Confidence 45899999999999999999987777665566666666655544321 1349999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHHH-HHHH---hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk---~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
..+++.+-+++||+|++..-.......| .-++ ..++-+|++.||-|+... +.-.
T Consensus 76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~----R~Vt------------------ 133 (214)
T KOG0086|consen 76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE----REVT------------------ 133 (214)
T ss_pred HHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh----hhhh------------------
Confidence 9999999999999999875443333333 3333 346778889999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
..+...... ...+.++.+||+||+|+.+.+-....
T Consensus 134 -flEAs~Faq---------------Enel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 134 -FLEASRFAQ---------------ENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred -HHHHHhhhc---------------ccceeeeeecccccccHHHHHHHHHH
Confidence 011111111 12357889999999999987765543
No 254
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.39 E-value=1.1e-12 Score=121.72 Aligned_cols=75 Identities=24% Similarity=0.359 Sum_probs=67.7
Q ss_pred ccc-CCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccccc
Q 000923 1102 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1179 (1222)
Q Consensus 1102 vf~-~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~ 1179 (1222)
+|+ ++.+.||||+|++|.|++|+.+++ |+++++|.|+|.||++++++|.+|.+|++|||.|.+++ +|.
T Consensus 8 vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~----------d~~ 77 (84)
T cd03692 8 VFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN----------DIK 77 (84)
T ss_pred EEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc----------cCC
Confidence 454 345789999999999999999998 88999999999999999999999999999999999885 688
Q ss_pred cCCeEEE
Q 000923 1180 IEDELVS 1186 (1222)
Q Consensus 1180 ~~d~l~s 1186 (1222)
.||+|.+
T Consensus 78 ~Gdvi~~ 84 (84)
T cd03692 78 VGDIIEA 84 (84)
T ss_pred CCCEEEC
Confidence 9999864
No 255
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.38 E-value=3.7e-12 Score=141.03 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=56.4
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh------
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 707 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~------ 707 (1222)
.|+|+|++++|||||+++|++.....+...+.|.+.....+.+ ....|++|||||+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~----------------~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY----------------KGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE----------------CCeEEEEEECCCcccccccch
Confidence 4899999999999999999977544443344443222211211 223599999999743
Q ss_pred -hHHHHHhhcccCceeEEEecccCC
Q 000923 708 -FTNLRSRGSGLCDIAILVVDIMHG 731 (1222)
Q Consensus 708 -F~~~~~rg~~~aD~aILVVDa~dG 731 (1222)
+...+...++.+|++|+|+|+++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcc
Confidence 233455678899999999998753
No 256
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.37 E-value=5.1e-12 Score=136.15 Aligned_cols=122 Identities=17% Similarity=0.173 Sum_probs=70.6
Q ss_pred CEEEEEccCCCCchhhhh-hhcCCccccccc-CceeEeeee--eEeec-cccccchhhcccccccccCCeEeecCCCchh
Q 000923 633 PICCIMGHVDTGKTKLLD-CIRGTNVQEGEA-GGITQQIGA--TYFPA-ENIRERTRELKANATLKVPGLLVIDTPGHES 707 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~-~L~~~~v~~~e~-~GIT~~iga--~~~~~-~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~ 707 (1222)
..|+|+|..++|||||+. ++.+..+..+.. ......++. .+... .........+.. ....|.||||+|++.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~----~~v~l~iwDTaG~~~ 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDG----VSVSLRLWDTFGDHD 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCC----EEEEEEEEeCCCChh
Confidence 469999999999999996 554433321110 011112221 00000 000000000000 113499999999876
Q ss_pred hHHHHHhhcccCceeEEEecccCCCChhHHH--HHHHHHh--cCCceEEEEeeeccc
Q 000923 708 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRL 760 (1222)
Q Consensus 708 F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e--~l~~lk~--~~vP~IVviNKiDl~ 760 (1222)
+ ++..+++.+|++|||+|.++....+... ++..++. .++|+|+|+||+|+.
T Consensus 79 ~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 79 K--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred h--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 3 4556788999999999998755444332 3344443 368999999999985
No 257
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.36 E-value=2.2e-12 Score=126.88 Aligned_cols=156 Identities=18% Similarity=0.130 Sum_probs=109.7
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
..+|+|.+++|||+|+-+|....|.......|..++-...++.++.+ ..+.||||+|++.|..++.
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~--------------VkLqIwDtAGqErFrtits 75 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDR--------------VKLQIWDTAGQERFRTITS 75 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcE--------------EEEEEeecccHHHHHHHHH
Confidence 36899999999999999998776665443333333333333333221 2499999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhH-HHHHHHHHhc--CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQT-IESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 790 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT-~e~l~~lk~~--~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l 790 (1222)
.+++.++++|+|+|.++|-.... ..+|..++.. .+|-|+|.||.|.+. +..-. -
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~-----RrvV~------------------t 132 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE-----RRVVD------------------T 132 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc-----ceeee------------------h
Confidence 99999999999999999866443 4445555543 579999999999863 11000 0
Q ss_pred HHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 791 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 791 ~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.........+ .+.+|.+||+...|+..++..|..+.
T Consensus 133 ~dAr~~A~~m---------------gie~FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 133 EDARAFALQM---------------GIELFETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred HHHHHHHHhc---------------CchheehhhhhcccchHHHHHHHHHH
Confidence 0111122222 35899999999999999998887654
No 258
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.34 E-value=1.5e-11 Score=132.66 Aligned_cols=178 Identities=19% Similarity=0.258 Sum_probs=103.0
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh----
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 708 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F---- 708 (1222)
+.|+|+|.+|+|||||+++|++...... +.++. +......... .+.. -....++||||||...+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~~--~~~~~t~~~~-----~~~~---~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE--GAAPT--GVVETTMKRT-----PYPH---PKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC--Ccccc--CccccccCce-----eeec---CCCCCceEEeCCCCCcccCCH
Confidence 4699999999999999999987543221 11111 1000000000 0000 00245999999996432
Q ss_pred -HHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 709 -TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 709 -~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
..+...++..+|++|+|.+ .++......++..++..+.|+++|+||+|+... ......... .....+.+.+.
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~-~~~~~~~~~----~~~~~~l~~i~ 142 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLS-NEQRSKPRS----FNREQVLQEIR 142 (197)
T ss_pred HHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhh-hhhcccccc----ccHHHHHHHHH
Confidence 1133445677898888754 456766677788888889999999999998520 000000000 00011222222
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCC--CCCChhhHHHHHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI--SGEGIPDLLLLLVQWTQKT 844 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~--tGeGI~eLl~~i~~~~~~~ 844 (1222)
. .+...+...|+ ...+||.+|+. .+.|++.|.+.|...++..
T Consensus 143 ~---~~~~~~~~~~~------------~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 143 D---NCLENLQEAGV------------SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred H---HHHHHHHHcCC------------CCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 2 22223333332 23589999998 7899999999998877654
No 259
>PRK09866 hypothetical protein; Provisional
Probab=99.32 E-value=2.1e-11 Score=146.70 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=82.0
Q ss_pred CCeEeecCCCchh-----hHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcC--CceEEEEeeeccccCcccCC
Q 000923 695 PGLLVIDTPGHES-----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TEFIVALNKVDRLYGWKTCR 767 (1222)
Q Consensus 695 ~~i~~IDTPGhe~-----F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~--vP~IVviNKiDl~~~w~~~~ 767 (1222)
.+|+||||||... +..++...+..+|++|||||+..++.+.....++.++..+ .|+|+|+||+|+...+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre---- 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN---- 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc----
Confidence 5699999999422 4445667899999999999999988888888888888877 5999999999986311
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 768 NAPIVKAIKQQNTDVQNEFNMRLVQIV-TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 768 ~a~i~~~l~~q~~~~~~~~~~~l~~i~-~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.+... .+...+ ..|...++ .+..||||||++|.|+..|+..|...
T Consensus 306 -eddkE---------------~Lle~V~~~L~q~~i------------~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 306 -SDDAD---------------QVRALISGTLMKGCI------------TPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred -cchHH---------------HHHHHHHHHHHhcCC------------CCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 10011 111121 12222221 23479999999999999999998763
No 260
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.31 E-value=5.1e-12 Score=124.19 Aligned_cols=106 Identities=24% Similarity=0.336 Sum_probs=76.1
Q ss_pred EEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh-----
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 707 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~----- 707 (1222)
.|+|+|.+|+|||||+++|++.+. ..+...+.|.+.....+.+. ...+.|+||||...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~----------------~~~~~~vDtpG~~~~~~~~ 64 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN----------------NKKFILVDTPGINDGESQD 64 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET----------------TEEEEEEESSSCSSSSHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec----------------eeeEEEEeCCCCcccchhh
Confidence 389999999999999999997542 34444566665533222222 13478999999532
Q ss_pred ----hHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEee
Q 000923 708 ----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNK 756 (1222)
Q Consensus 708 ----F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNK 756 (1222)
+.....+.+..+|++|+|||+.+....+....++.++ .+.|+|+|+||
T Consensus 65 ~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 65 NDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 2334555668899999999988744455566677776 88999999998
No 261
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=1.6e-11 Score=136.85 Aligned_cols=160 Identities=20% Similarity=0.218 Sum_probs=101.1
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh--h
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--F 708 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~--F 708 (1222)
-.|+|+|+|+||+|||||+.+|++.......++.+|.++..-++..... .|++|||||.-+ +
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~----------------R~QvIDTPGlLDRPl 230 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYL----------------RIQVIDTPGLLDRPL 230 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCc----------------eEEEecCCcccCCCh
Confidence 3466999999999999999999988766655566665555445544432 499999999433 1
Q ss_pred HHH------HHhhc-ccCceeEEEecccC--CCChhHH-HHHHHHHh-cCCceEEEEeeeccccCcccCCCchHHHHHHH
Q 000923 709 TNL------RSRGS-GLCDIAILVVDIMH--GLEPQTI-ESLNLLKM-RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 777 (1222)
Q Consensus 709 ~~~------~~rg~-~~aD~aILVVDa~d--Gv~~qT~-e~l~~lk~-~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~ 777 (1222)
..+ ....+ ...+++|+++|.+. |....-. ..|..++. ++.|+|+|+||+|..+.|
T Consensus 231 ~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e-------------- 296 (346)
T COG1084 231 EERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE-------------- 296 (346)
T ss_pred HHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh--------------
Confidence 111 11222 34688999999975 4332222 22333433 468999999999987421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHH
Q 000923 778 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 845 (1222)
Q Consensus 778 q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l 845 (1222)
.+..+...+...|. ...+.+|+..+.+++.+-..+......++
T Consensus 297 -----------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~d~~~~~v~~~a~~~~ 339 (346)
T COG1084 297 -----------KLEEIEASVLEEGG--------------EEPLKISATKGCGLDKLREEVRKTALEPL 339 (346)
T ss_pred -----------HHHHHHHHHHhhcc--------------ccccceeeeehhhHHHHHHHHHHHhhchh
Confidence 23333333433332 23456788889999888777766544333
No 262
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.4e-11 Score=138.06 Aligned_cols=247 Identities=19% Similarity=0.288 Sum_probs=144.3
Q ss_pred hhccccccccCCCCCcCCCCccccccCCCC-EEEEEccCCCCchhhhhhhcCCc---ccccccCceeEeeeeeEeecccc
Q 000923 604 VTRKKEPAAKSKEPEVDATPKQAEENLRSP-ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENI 679 (1222)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~-~V~IvG~vdsGKTTLl~~L~~~~---v~~~e~~GIT~~iga~~~~~~~~ 679 (1222)
..+..+.+.........+...+++....+| +|+|||++|+|||||+..|...- ......|.||...|-+
T Consensus 40 ar~~~rtadi~ekklhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~------- 112 (1077)
T COG5192 40 ARQAMRTADIEEKKLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKT------- 112 (1077)
T ss_pred HHHHhhccchhhhccccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecce-------
Confidence 334444444444444445455555555444 56799999999999999886321 1112223344433321
Q ss_pred ccchhhcccccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEE-EEeeec
Q 000923 680 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV-ALNKVD 758 (1222)
Q Consensus 680 ~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IV-viNKiD 758 (1222)
..|+|+.||. + .+.++..+..+|++||+||++-|+...|.+.|++|...+.|.|+ |++.+|
T Consensus 113 ---------------RRiTflEcp~--D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlD 174 (1077)
T COG5192 113 ---------------RRITFLECPS--D-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLD 174 (1077)
T ss_pred ---------------eEEEEEeChH--H-HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecc
Confidence 3599999993 3 34556678899999999999999999999999999999999665 899999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhh-HHHHH
Q 000923 759 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD-LLLLL 837 (1222)
Q Consensus 759 l~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~e-Ll~~i 837 (1222)
+.. +. .+|+...+.+..+|+..++. ..-+|.+|.+-+--.++ -+-.|
T Consensus 175 lfk------~~---stLr~~KKrlkhRfWtEiyq-----------------------GaKlFylsgV~nGRYpDreilnL 222 (1077)
T COG5192 175 LFK------NP---STLRSIKKRLKHRFWTEIYQ-----------------------GAKLFYLSGVENGRYPDREILNL 222 (1077)
T ss_pred ccc------Ch---HHHHHHHHHHhhhHHHHHcC-----------------------CceEEEecccccCCCCCHHHHHH
Confidence 963 22 23333333333444433221 13455556554322222 12223
Q ss_pred HHHHHHHHHHhhhcc-----------ccccceEEEEEEEc--CceeEEEEEEEe-eeecCCCEEEEccCCCceeeeeeec
Q 000923 838 VQWTQKTMVEKLTFR-----------NELQCTVLEVKVIE--GHGTTIDVVLVN-GVLHEGDQIVVCGLQGPIVTTIRAL 903 (1222)
Q Consensus 838 ~~~~~~~l~e~l~~~-----------~~~~~~VlEv~~~~--g~G~v~~~~V~~-GtLk~GD~ivv~g~~g~~~~~Ir~l 903 (1222)
.+++.-.-...|.+. ..+..+++ +..-+ |+-.+++|.|.. |..+....|+|.|.+...+..|-.|
T Consensus 223 sRfisVMKfRPl~Wrn~HPy~laDR~~Dlt~p~~-ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvGDf~~adve~L 301 (1077)
T COG5192 223 SRFISVMKFRPLEWRNMHPYVLADRVDDLTLPVD-IEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVGDFRMADVEVL 301 (1077)
T ss_pred HHHHhhhcccccccccCCceeehhhhccccchhh-hhhccccCceEEEEEEecCCCCCCCCceEeccCccccchhhhhhc
Confidence 333321111111111 01111110 11222 233455666653 5566677899999888888889999
Q ss_pred cCCCC
Q 000923 904 LTPHP 908 (1222)
Q Consensus 904 l~p~p 908 (1222)
.+|+|
T Consensus 302 ~DPcP 306 (1077)
T COG5192 302 IDPCP 306 (1077)
T ss_pred CCCCC
Confidence 99887
No 263
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.30 E-value=1.8e-11 Score=134.81 Aligned_cols=110 Identities=23% Similarity=0.329 Sum_probs=78.7
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 708 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F 708 (1222)
...+.+|+|+|++|+|||||++.|++.... ..++...|.+.+. ......++|+||||+.
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~----~~~~~~~g~i~i~---------------~~~~~~i~~vDtPg~~-- 94 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTK----QNISDIKGPITVV---------------TGKKRRLTFIECPNDI-- 94 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhccc----CccccccccEEEE---------------ecCCceEEEEeCCchH--
Confidence 344567999999999999999999753110 0011111111000 0012459999999975
Q ss_pred HHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEE-EEeeeccc
Q 000923 709 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV-ALNKVDRL 760 (1222)
Q Consensus 709 ~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IV-viNKiDl~ 760 (1222)
..+...+..+|++|||+|+..++..++..++..+...++|.+| |+||+|++
T Consensus 95 -~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 95 -NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred -HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 3344567889999999999999999999999999989999654 99999986
No 264
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.30 E-value=1.4e-11 Score=121.32 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=106.6
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.++++|-.++|||||++.+..+.+... +..+.|+....+.. .+..+.+||.||+..|..|+.
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~tk--------------gnvtiklwD~gGq~rfrsmWe 83 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVTK--------------GNVTIKLWDLGGQPRFRSMWE 83 (186)
T ss_pred eEEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEecc--------------CceEEEEEecCCCccHHHHHH
Confidence 389999999999999999876544332 22233332222211 012388999999999999999
Q ss_pred hhcccCceeEEEecccCCC-ChhHHHHH-HHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGL-EPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv-~~qT~e~l-~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
++.+.++++|+|||+.+.- -...++-| .+|.. .++|++|..||+|+.+.-
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL------------------------- 138 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL------------------------- 138 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc-------------------------
Confidence 9999999999999998731 12223333 33332 389999999999997421
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.. .....+.|+.. ...+.+.++.||++...||+-+++||..+.
T Consensus 139 --~~-~~li~rmgL~s-------itdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 139 --SK-IALIERMGLSS-------ITDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred --cH-HHHHHHhCccc-------cccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 00 11222334432 113568999999999999999999998764
No 265
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.29 E-value=3.1e-11 Score=131.58 Aligned_cols=115 Identities=23% Similarity=0.214 Sum_probs=86.0
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+|+|..|+|||||+++|.+..+..+...+++..+.......... ...+.+|||+|+..|..++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYRSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC--------------EEEEEeecCCCHHHHHHHH
Confidence 56999999999999999999988877655555444333322221100 1238999999999999999
Q ss_pred HhhcccCceeEEEecccC--CCChhHHHHHHHHHhc---CCceEEEEeeecccc
Q 000923 713 SRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMR---NTEFIVALNKVDRLY 761 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~d--Gv~~qT~e~l~~lk~~---~vP~IVviNKiDl~~ 761 (1222)
..+...++++|+|+|... ....-+..++..+... ..|+|++.||+|+..
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 999999999999999986 3334444455555553 589999999999974
No 266
>COG2262 HflX GTPases [General function prediction only]
Probab=99.27 E-value=2.1e-11 Score=139.79 Aligned_cols=153 Identities=24% Similarity=0.288 Sum_probs=98.4
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc------
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------ 705 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh------ 705 (1222)
-|.|+++|.+|+|||||+|+|++..+.....-..|.+.....+.+.. ...++|-||-|+
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~---------------g~~vlLtDTVGFI~~LP~ 256 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD---------------GRKVLLTDTVGFIRDLPH 256 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC---------------CceEEEecCccCcccCCh
Confidence 36699999999999999999987665433322222222221111110 245899999994
Q ss_pred ---hhhHHHHHhhcccCceeEEEecccCCC-ChhHHHHHHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHh
Q 000923 706 ---ESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 778 (1222)
Q Consensus 706 ---e~F~~~~~rg~~~aD~aILVVDa~dGv-~~qT~e~l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q 778 (1222)
++|..+ ..-...+|++|+|||+++.. ..+.......|.. ..+|+|+|+||||++.. ..
T Consensus 257 ~LV~AFksT-LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~------~~-------- 321 (411)
T COG2262 257 PLVEAFKST-LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED------EE-------- 321 (411)
T ss_pred HHHHHHHHH-HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc------hh--------
Confidence 345433 33466799999999999852 2222333444444 46799999999998731 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 779 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 779 ~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
....+. . +. -..|++||++|.|++.|++.|...++.
T Consensus 322 --------------~~~~~~-~-------------~~-~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 322 --------------ILAELE-R-------------GS-PNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred --------------hhhhhh-h-------------cC-CCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 000110 0 01 158999999999999999998877653
No 267
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.25 E-value=8.6e-12 Score=123.91 Aligned_cols=158 Identities=22% Similarity=0.164 Sum_probs=104.3
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
-++.|+++|..=+|||||+-+++...|.......+ + +.+.... +. ..-....+.||||+|++.|..
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTl--Q--ASF~~kk--------~n--~ed~ra~L~IWDTAGQErfHA 77 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTL--Q--ASFQNKK--------VN--VEDCRADLHIWDTAGQERFHA 77 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHH--H--HHHhhcc--------cc--cccceeeeeeeeccchHhhhc
Confidence 34679999999999999999987666554322111 1 1111000 00 000113599999999999999
Q ss_pred HHHhhcccCceeEEEecccCCCChhHHHHH-HHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
+-..+++.++++|||+|+++.-..|-...| ..++. ..+.++||.||||+... +
T Consensus 78 LGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee----R------------------- 134 (218)
T KOG0088|consen 78 LGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE----R------------------- 134 (218)
T ss_pred cCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh----h-------------------
Confidence 999999999999999999997777765554 34443 34679999999998520 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.....+........| ..++.+||+.+.||.+|+..|...
T Consensus 135 ~Vt~qeAe~YAesvG---------------A~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 135 QVTRQEAEAYAESVG---------------ALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred hhhHHHHHHHHHhhc---------------hhheecccccccCHHHHHHHHHHH
Confidence 000011111111111 367899999999999999888754
No 268
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.25 E-value=2.8e-11 Score=121.76 Aligned_cols=158 Identities=22% Similarity=0.227 Sum_probs=107.1
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
|...|.|+|..|+|||||+.+|.+.... +|...+|...-. ..++...+++||..|+..+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~-----~i~pt~gf~Ikt--------------l~~~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD-----TISPTLGFQIKT--------------LEYKGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc-----ccCCccceeeEE--------------EEecceEEEEEEcCCcchhHH
Confidence 4566999999999999999999865422 233222221111 112335699999999999999
Q ss_pred HHHhhcccCceeEEEecccCCC-ChhHHHHHHHHH----hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv-~~qT~e~l~~lk----~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
.+..++..+|++|+|||..+.. +..+...|..|. ..+.|++|+.||.|+.+...
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~--------------------- 134 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS--------------------- 134 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC---------------------
Confidence 9999999999999999998753 334454554442 35789999999999974211
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...|...+ +.+.+. ....++++-|||.||+++.+-++||+.-+
T Consensus 135 ----~~~i~~~~-----~L~~l~----ks~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 135 ----LEEISKAL-----DLEELA----KSHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred ----HHHHHHhh-----CHHHhc----cccCceEEEEeccccccHHHHHHHHHHHH
Confidence 01111111 001110 12457999999999999988888887544
No 269
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.24 E-value=2.6e-11 Score=133.83 Aligned_cols=149 Identities=23% Similarity=0.340 Sum_probs=96.2
Q ss_pred EEEEEccCCCCchhhhhhhcCCccccc--ccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh----
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEG--EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 707 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~--e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~---- 707 (1222)
.|++||.||+||||||++|....-..+ ...++..++|..++. . | ..|++-|.||...
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yd--d-------------f--~q~tVADiPGiI~GAh~ 260 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYD--D-------------F--SQITVADIPGIIEGAHM 260 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecc--c-------------c--ceeEeccCccccccccc
Confidence 489999999999999999987654433 334444566633322 1 1 2399999999432
Q ss_pred ---hHHHHHhhcccCceeEEEecccCCC--Ch--hHHHHHHHHHhc-----CCceEEEEeeeccccCcccCCCchHHHHH
Q 000923 708 ---FTNLRSRGSGLCDIAILVVDIMHGL--EP--QTIESLNLLKMR-----NTEFIVALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 708 ---F~~~~~rg~~~aD~aILVVDa~dGv--~~--qT~e~l~~lk~~-----~vP~IVviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
......+.+..|+++++|||++.+. .| |....|..+..+ ..|.+||+||||++.+
T Consensus 261 nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea------------- 327 (366)
T KOG1489|consen 261 NKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA------------- 327 (366)
T ss_pred cCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH-------------
Confidence 1223456778899999999998762 22 222333344433 5699999999998521
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 776 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 776 ~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
.. ..+..+...| ....|||+||++|+|+..|+..|-.
T Consensus 328 -------e~---~~l~~L~~~l-----------------q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 328 -------EK---NLLSSLAKRL-----------------QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred -------HH---HHHHHHHHHc-----------------CCCcEEEeeeccccchHHHHHHHhh
Confidence 00 0112222222 1125999999999999999887643
No 270
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.24 E-value=2.9e-11 Score=130.84 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=81.9
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|+++|..++|||||+.+|+...+.......+..++....+.+.... ... ....|.||||+|++.|..++.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~------~~~---~~~~l~IwDtaG~e~~~~l~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGT------PEE---KTFFVELWDVGGSESVKSTRA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCC------CCC---cEEEEEEEecCCchhHHHHHH
Confidence 58999999999999999999877665443333322222222221000 000 012389999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHHHh----------------------cCCceEEEEeeeccc
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----------------------RNTEFIVALNKVDRL 760 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~----------------------~~vP~IVviNKiDl~ 760 (1222)
.+++.+|++|||+|.++....+....| ..+.. .++|+|||.||+|+.
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999999999999999986544444333 22322 268999999999986
No 271
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.23 E-value=5.1e-11 Score=130.12 Aligned_cols=175 Identities=15% Similarity=0.194 Sum_probs=113.8
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh-
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 707 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~- 707 (1222)
...+.+|.|||.+|+|||||+|+|+.+++..-. ++|++.-+.... ...+....++||||||..+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~------~vg~~t~~~~~~---------~~~~~~~~l~lwDtPG~gdg 100 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS------KVGVGTDITTRL---------RLSYDGENLVLWDTPGLGDG 100 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee------ecccCCCchhhH---------HhhccccceEEecCCCcccc
Confidence 345556779999999999999999866544211 122221111100 0112235699999999765
Q ss_pred ------hHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHh--cCCceEEEEeeeccc---cCcccCCCchHHHHHH
Q 000923 708 ------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM--RNTEFIVALNKVDRL---YGWKTCRNAPIVKAIK 776 (1222)
Q Consensus 708 ------F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~--~~vP~IVviNKiDl~---~~w~~~~~a~i~~~l~ 776 (1222)
+.......+...|++++++++.+..-......|+.+.. ++.|+|+++|-+|+. +.|....+.+....
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~-- 178 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAI-- 178 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHH--
Confidence 67777778889999999999998766666666665544 357999999999974 35765554333211
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 777 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 777 ~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
++-+....+.+...+. ..-||+.+|+.+++|+..|+..++..++
T Consensus 179 ------~qfi~~k~~~~~~~~q----------------~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 179 ------KQFIEEKAEALGRLFQ----------------EVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ------HHHHHHHHHHHHHHHh----------------hcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1111112222211111 2349999999999999999999887665
No 272
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=5.3e-11 Score=123.07 Aligned_cols=156 Identities=23% Similarity=0.193 Sum_probs=108.4
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..|+++|--++||||++..|....+... - -|+-+..-.+. |.+..+++||..|+..+..++
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~vtt-v--PTiGfnVE~v~----------------ykn~~f~vWDvGGq~k~R~lW 78 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-V--PTIGFNVETVE----------------YKNISFTVWDVGGQEKLRPLW 78 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCcccC-C--CccccceeEEE----------------EcceEEEEEecCCCcccccch
Confidence 4599999999999999999975554321 1 11112222222 233459999999999999999
Q ss_pred HhhcccCceeEEEecccCCCC-hhHH-HHHHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLE-PQTI-ESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~-~qT~-e~l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
..++..++++|+|||.++... +... +..+++.. .++|++|+.||.|+++..
T Consensus 79 ~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al------------------------ 134 (181)
T KOG0070|consen 79 KHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL------------------------ 134 (181)
T ss_pred hhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC------------------------
Confidence 999999999999999988432 1222 23333333 378999999999997531
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
...+|...|....+. .....+-.++|.+|+|+.+-+++|...+.
T Consensus 135 -s~~ei~~~L~l~~l~----------~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 135 -SAAEITNKLGLHSLR----------SRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred -CHHHHHhHhhhhccC----------CCCcEEeeccccccccHHHHHHHHHHHHh
Confidence 123444445444433 23457889999999999999999876553
No 273
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=6.6e-11 Score=117.81 Aligned_cols=170 Identities=17% Similarity=0.127 Sum_probs=104.9
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHh
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 714 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~r 714 (1222)
+..+|..|+|||||+-+.+...|...-...+.+++--..+.+.. ..-.....-....+.||||+|++.|.+++..
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s-----~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNS-----SGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEec-----cCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 57789999999999998876554322111111111111111110 0000000000124899999999999999999
Q ss_pred hcccCceeEEEecccCCCC-hhHHHHHHHHHhc----CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 715 GSGLCDIAILVVDIMHGLE-PQTIESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 715 g~~~aD~aILVVDa~dGv~-~qT~e~l~~lk~~----~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.++.+-+.||++|.+..-. -.++.++.+|+.. +--+|++.||+|+..- +.. .
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~---------R~V--------------s 143 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ---------RVV--------------S 143 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh---------hhh--------------h
Confidence 9999999999999986433 2344555666553 3348889999999620 000 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 847 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e 847 (1222)
-.+.......+| +|+|.+||-||.||..-.+.|+.++-..|..
T Consensus 144 ~~qa~~La~kyg---------------lPYfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 144 EDQAAALADKYG---------------LPYFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred HHHHHHHHHHhC---------------CCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 011222222333 5999999999999999888888776555544
No 274
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.20 E-value=8.5e-11 Score=131.59 Aligned_cols=157 Identities=20% Similarity=0.203 Sum_probs=104.5
Q ss_pred EEEEccCCCCchhhhhhhcCCc--ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh-----
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 707 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~--v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~----- 707 (1222)
|+++|.|++||||||.++.... +..+...+++..+|...+... ..++|-|.||...
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-----------------~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-----------------ESFVVADIPGLIEGASEG 224 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-----------------CcEEEecCcccccccccC
Confidence 7899999999999999998765 566666666677777665221 3499999999422
Q ss_pred --hHHHHHhhcccCceeEEEecccCCC----ChhHHHHHHHHHhc-----CCceEEEEeeeccccCcccCCCchHHHHHH
Q 000923 708 --FTNLRSRGSGLCDIAILVVDIMHGL----EPQTIESLNLLKMR-----NTEFIVALNKVDRLYGWKTCRNAPIVKAIK 776 (1222)
Q Consensus 708 --F~~~~~rg~~~aD~aILVVDa~dGv----~~qT~e~l~~lk~~-----~vP~IVviNKiDl~~~w~~~~~a~i~~~l~ 776 (1222)
......+.+..|-++++|||++.-- -.+...++..|..+ +.|.|||+||||++..
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-------------- 290 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-------------- 290 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC--------------
Confidence 1223456677899999999997432 12222333445544 6799999999997521
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHH
Q 000923 777 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 845 (1222)
Q Consensus 777 ~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l 845 (1222)
.+.+..+...|.... ..+.+++|||+|++|+..|+..+..++....
T Consensus 291 ----------~e~~~~~~~~l~~~~-------------~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 291 ----------EEELEELKKALAEAL-------------GWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ----------HHHHHHHHHHHHHhc-------------CCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 111222223332211 1123333999999999999999988877653
No 275
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.20 E-value=1.5e-10 Score=124.78 Aligned_cols=111 Identities=22% Similarity=0.194 Sum_probs=78.8
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccc--cCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH--
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-- 709 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e--~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~-- 709 (1222)
+|+|+|.+|+|||||+|.|++....... ..+.|.+.......+. ...|+||||||..++.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~----------------~~~i~viDTPG~~d~~~~ 65 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD----------------GRRVNVIDTPGLFDTSVS 65 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC----------------CeEEEEEECcCCCCccCC
Confidence 5999999999999999999987643322 3456655444433332 2459999999965431
Q ss_pred -----HHH----HhhcccCceeEEEecccCCCChhHHHHHHHHHhc-C----CceEEEEeeecccc
Q 000923 710 -----NLR----SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-N----TEFIVALNKVDRLY 761 (1222)
Q Consensus 710 -----~~~----~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~-~----vP~IVviNKiDl~~ 761 (1222)
... ......+|++|||+++.+ +.......++.++.. + .++||++|++|.+.
T Consensus 66 ~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 66 PEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 111 122456799999999987 887777888777653 2 57899999999863
No 276
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.19 E-value=8e-11 Score=117.95 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=105.5
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
..+.+||..-+|||+||.+++.+.++.-..+.+..++.+..+.. ..... ..+.+|||+|++.|..++
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~----------~pg~r---iklqlwdtagqerfrsit 75 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIEL----------RPGYR---IKLQLWDTAGQERFRSIT 75 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhc----------CCCcE---EEEEEeeccchHHHHHHH
Confidence 34789999999999999999877766543333322222211111 11000 248999999999999999
Q ss_pred HhhcccCceeEEEecccCCCChhHHHHHH-HHHhc-----CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKMR-----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~l~-~lk~~-----~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~ 786 (1222)
.++++.+=+++||+|+++.-...-.+.|- .+.++ ++-|.+|.+|+|+... +.-
T Consensus 76 ksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq----RqV----------------- 134 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ----RQV----------------- 134 (213)
T ss_pred HHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh----ccc-----------------
Confidence 99999999999999998854443333332 22221 3347789999999631 100
Q ss_pred HHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 787 ~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
...+.-...+.+| ..+|.+||++|.||.+-+.+|.+.+..
T Consensus 135 --t~EEaEklAa~hg---------------M~FVETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 135 --TAEEAEKLAASHG---------------MAFVETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred --cHHHHHHHHHhcC---------------ceEEEecccCCCcHHHHHHHHHHHHHH
Confidence 0111112233344 379999999999999999998765543
No 277
>PLN00023 GTP-binding protein; Provisional
Probab=99.19 E-value=5.2e-11 Score=135.46 Aligned_cols=131 Identities=17% Similarity=0.156 Sum_probs=83.4
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 708 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F 708 (1222)
.....+|+|+|+.++|||||+.+|+...+.......|..++....+.+.........+... .-....+.||||+|++.|
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d-~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGD-SERDFFVELWDVSGHERY 96 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCccccccccccc-CCceEEEEEEECCCChhh
Confidence 3455679999999999999999999876654433333333222222221100000000000 000123899999999999
Q ss_pred HHHHHhhcccCceeEEEecccCCCChhHHH-HHHHHHhc---------------CCceEEEEeeeccc
Q 000923 709 TNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR---------------NTEFIVALNKVDRL 760 (1222)
Q Consensus 709 ~~~~~rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~~---------------~vP~IVviNKiDl~ 760 (1222)
..++..+++.+|++|||+|+++.-....+. ++..+... ++|+|||.||+|+.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 999999999999999999998743322222 23333322 48999999999996
No 278
>PRK13768 GTPase; Provisional
Probab=99.19 E-value=1e-10 Score=131.17 Aligned_cols=131 Identities=23% Similarity=0.326 Sum_probs=78.7
Q ss_pred CCeEeecCCCchhhHHHHH------hhccc--CceeEEEecccCCCChhHHHHHHHHH-----hcCCceEEEEeeecccc
Q 000923 695 PGLLVIDTPGHESFTNLRS------RGSGL--CDIAILVVDIMHGLEPQTIESLNLLK-----MRNTEFIVALNKVDRLY 761 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~~~~~------rg~~~--aD~aILVVDa~dGv~~qT~e~l~~lk-----~~~vP~IVviNKiDl~~ 761 (1222)
..+.||||||+..+...+. +.+.. ++++|+|||+.++..+.+......+. ..++|+|+|+||+|+..
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 3699999999766432211 22322 89999999999888887766654443 56899999999999973
Q ss_pred CcccCCCchHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHH
Q 000923 762 GWKTCRNAPIVKAIKQQNTDVQNEFNM-------RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 834 (1222)
Q Consensus 762 ~w~~~~~a~i~~~l~~q~~~~~~~~~~-------~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl 834 (1222)
.- ....+...+. ....+...+.. ....+...+.. .+...+++++||.++.|+.+|+
T Consensus 177 ~~---~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~~~~~~i~~-------------~~~~~~vi~iSa~~~~gl~~L~ 239 (253)
T PRK13768 177 EE---ELERILKWLE-DPEYLLEELKLEKGLQGLLSLELLRALEE-------------TGLPVRVIPVSAKTGEGFDELY 239 (253)
T ss_pred ch---hHHHHHHHHh-CHHHHHHHHhcccchHHHHHHHHHHHHHH-------------HCCCCcEEEEECCCCcCHHHHH
Confidence 10 0001111111 11111111111 01111122222 1334589999999999999999
Q ss_pred HHHHHHHH
Q 000923 835 LLLVQWTQ 842 (1222)
Q Consensus 835 ~~i~~~~~ 842 (1222)
.+|..+++
T Consensus 240 ~~I~~~l~ 247 (253)
T PRK13768 240 AAIQEVFC 247 (253)
T ss_pred HHHHHHcC
Confidence 99987653
No 279
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.2e-10 Score=113.53 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=104.5
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
...|+|..|+|||+|+..|....|...-...|...+|...+...+.. ..+.||||.|++.|...+.
T Consensus 13 kyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqk--------------iklqiwdtagqerfravtr 78 (215)
T KOG0097|consen 13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK--------------IKLQIWDTAGQERFRAVTR 78 (215)
T ss_pred EEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcE--------------EEEEEeecccHHHHHHHHH
Confidence 46899999999999999998777765555566666666665554432 2389999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
++++.+-++++|+|++....-.-..+| .-++. .+..++++.||.|+... +...
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~q----rdv~------------------- 135 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQ----RDVT------------------- 135 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhc----ccCc-------------------
Confidence 999999999999999864332222222 22233 35568889999998621 1111
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL 836 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~ 836 (1222)
..+......+.| .-|+.+||+||.++.+.+-.
T Consensus 136 yeeak~faeeng---------------l~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 136 YEEAKEFAEENG---------------LMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred HHHHHHHHhhcC---------------eEEEEecccccCcHHHHHHH
Confidence 112222222233 47899999999999876543
No 280
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.14 E-value=3.2e-10 Score=122.05 Aligned_cols=160 Identities=19% Similarity=0.132 Sum_probs=107.5
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
+...|+++|..|+|||+|+-+++...+.....+.|- +.....+...+ ....+.|+||+|...|..
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~--------------~~~~l~ilDt~g~~~~~~ 66 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDG--------------EVCMLEILDTAGQEEFSA 66 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECC--------------EEEEEEEEcCCCcccChH
Confidence 456799999999999999999998777655333332 11111111110 012488999999999999
Q ss_pred HHHhhcccCceeEEEecccCCCChhHHHHH-HHH-H---hcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~qT~e~l-~~l-k---~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
|+..++...|+.|||+++++....+....| ..+ + ...+|+|+|.||+|+... +.-.
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~----R~V~--------------- 127 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE----RQVS--------------- 127 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc----cccC---------------
Confidence 999999999999999999985444333222 222 2 235799999999999731 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
..+.. .|. .. -.++++.+||....++.+++..|++.+..
T Consensus 128 ----~eeg~-~la-------~~-------~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 128 ----EEEGK-ALA-------RS-------WGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred ----HHHHH-HHH-------Hh-------cCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 00000 111 11 12579999999999999999999876654
No 281
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.13 E-value=2.2e-10 Score=127.34 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=57.5
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh-hH---
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-FT--- 709 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~-F~--- 709 (1222)
.|+++|.|++||||||++|+++....+.....|... +++...|++..|+|+|+||... +.
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~----------------VPG~l~Y~ga~IQild~Pgii~gas~g~ 128 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP----------------VPGMLEYKGAQIQLLDLPGIIEGASSGR 128 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCccccccCceeccc----------------ccceEeecCceEEEEcCcccccCcccCC
Confidence 499999999999999999988765444333333222 2333445566799999999432 22
Q ss_pred ---HHHHhhcccCceeEEEecccCC
Q 000923 710 ---NLRSRGSGLCDIAILVVDIMHG 731 (1222)
Q Consensus 710 ---~~~~rg~~~aD~aILVVDa~dG 731 (1222)
......++.||++|+|+|+...
T Consensus 129 grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 129 GRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred CCcceeeeeeccCCEEEEEEecCCC
Confidence 2244557889999999999754
No 282
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.1e-10 Score=118.69 Aligned_cols=163 Identities=21% Similarity=0.211 Sum_probs=106.4
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccc-c--ccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQE-G--EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~-~--e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~ 709 (1222)
..|+|+|.-++|||||+.++-..-.-. + ...-||...|...-. .++....+.|||..|++...
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~--------------i~v~~~~l~fwdlgGQe~lr 83 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGT--------------IEVCNAPLSFWDLGGQESLR 83 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecc--------------eeeccceeEEEEcCChHHHH
Confidence 348999999999999999885321101 0 011233333322111 11122459999999999999
Q ss_pred HHHHhhcccCceeEEEecccCCCC-----hhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLE-----PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~-----~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
+++..++..|+++|+|||+.+.-. .+....+..=...++|+++.+||-|+... --
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~-------~~------------- 143 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA-------ME------------- 143 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh-------hh-------------
Confidence 999999999999999999988421 12223333334468999999999998621 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 785 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 785 ~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
...+..+..... + ...++.++.||||++|+||.+-+.|++..+..
T Consensus 144 --~~El~~~~~~~e---~---------~~~rd~~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 144 --AAELDGVFGLAE---L---------IPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred --HHHHHHHhhhhh---h---------cCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence 011222222211 1 12467899999999999999999998876543
No 283
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.13 E-value=4.6e-10 Score=127.37 Aligned_cols=113 Identities=21% Similarity=0.313 Sum_probs=75.3
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccc----------cCceeEeeeeeEeeccccccchhhcccccccccCCeEeecC
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGE----------AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDT 702 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e----------~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDT 702 (1222)
++|+|+|+.|+|||||+++|++..+.... ..+++.......+...+.. ..++||||
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~--------------~~l~iiDT 70 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVK--------------LKLTVIDT 70 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEE--------------EEEEEEec
Confidence 46999999999999999999987654331 1112222222222211110 24999999
Q ss_pred CCchhhHH---------------------HHH-----hhcc--cCceeEEEeccc-CCCChhHHHHHHHHHhcCCceEEE
Q 000923 703 PGHESFTN---------------------LRS-----RGSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVA 753 (1222)
Q Consensus 703 PGhe~F~~---------------------~~~-----rg~~--~aD~aILVVDa~-dGv~~qT~e~l~~lk~~~vP~IVv 753 (1222)
||..++.. ... ..+. .+|++|++++.. +++.+..++.++.+.. ++|+|+|
T Consensus 71 pGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~V 149 (276)
T cd01850 71 PGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPV 149 (276)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEE
Confidence 99544321 111 1222 367889998876 5788888888888875 7999999
Q ss_pred Eeeeccc
Q 000923 754 LNKVDRL 760 (1222)
Q Consensus 754 iNKiDl~ 760 (1222)
+||+|++
T Consensus 150 inK~D~l 156 (276)
T cd01850 150 IAKADTL 156 (276)
T ss_pred EECCCcC
Confidence 9999996
No 284
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.12 E-value=4.2e-11 Score=117.67 Aligned_cols=106 Identities=25% Similarity=0.315 Sum_probs=69.4
Q ss_pred EEEEEccCCCCchhhhhhhcCCccc----ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQ----EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~----~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~ 709 (1222)
+|+|+|+.|+|||||+++|++..+. .....+.+.......+.... ..+.|||++|+..|.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~d~~g~~~~~ 64 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDR----------------QSLQFWDFGGQEEFY 64 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEE----------------EEEEEEEESSSHCHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCc----------------eEEEEEecCccceec
Confidence 4899999999999999999876554 11122222222222221111 128999999998887
Q ss_pred HHHHhhcccCceeEEEecccCCCChhHHHH-------HHHHHh--cCCceEEEEeeec
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIES-------LNLLKM--RNTEFIVALNKVD 758 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~qT~e~-------l~~lk~--~~vP~IVviNKiD 758 (1222)
......+..+|++|||+|.++. .+.+. |..+.. .++|+|||.||.|
T Consensus 65 ~~~~~~~~~~d~~ilv~D~s~~---~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 65 SQHQFFLKKADAVILVYDLSDP---ESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp CTSHHHHHHSCEEEEEEECCGH---HHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ccccchhhcCcEEEEEEcCCCh---HHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 6655558889999999999873 33333 223332 3699999999998
No 285
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=3.1e-10 Score=131.92 Aligned_cols=159 Identities=19% Similarity=0.250 Sum_probs=106.3
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh---
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 707 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~--- 707 (1222)
.+.|+|+|.||+|||||+|+|....+ ..+...|.|.+.--..+..++ ..+.|+||+|...
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G----------------~~v~L~DTAGiRe~~~ 331 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG----------------VPVRLSDTAGIREESN 331 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC----------------eEEEEEeccccccccC
Confidence 36799999999999999999987664 346677888776555554433 4599999999644
Q ss_pred -----hHHH-HHhhcccCceeEEEecccCCCChhHHHHHHHHHhc------------CCceEEEEeeeccccCcccCCCc
Q 000923 708 -----FTNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR------------NTEFIVALNKVDRLYGWKTCRNA 769 (1222)
Q Consensus 708 -----F~~~-~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~------------~vP~IVviNKiDl~~~w~~~~~a 769 (1222)
..-+ ....+..+|+++||||++.+...+.....+.+... .-|+|+++||+|+...+...+..
T Consensus 332 ~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~ 411 (531)
T KOG1191|consen 332 DGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI 411 (531)
T ss_pred ChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC
Confidence 2222 23456789999999999887666665555555432 25889999999987432111111
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeE-EEcCCCCCCChhhHHHHHHHHH
Q 000923 770 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNI-VPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 770 ~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~v-vpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
++ .|... ..+..+++ +.+|++|++|+..|...|...+
T Consensus 412 ~~----------------------------------~~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 412 PV----------------------------------VYPSA-EGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ce----------------------------------ecccc-ccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 00 00000 11234454 4599999999999998887544
No 286
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.09 E-value=7.3e-10 Score=127.68 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=60.2
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCcee--EeeeeeEeeccccccchhhc-cc-----ccccccCCeEeecCCCc-
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTREL-KA-----NATLKVPGLLVIDTPGH- 705 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT--~~iga~~~~~~~~~~~~~~~-~~-----~~~~~~~~i~~IDTPGh- 705 (1222)
|+|+|.+++|||||+++|++..+.....++.| ..+|..+++......+...+ .. ...+....|.||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 68999999999999999998775544444444 55666665331110000000 00 00112235999999996
Q ss_pred ---hhhHHH---HHhhcccCceeEEEeccc
Q 000923 706 ---ESFTNL---RSRGSGLCDIAILVVDIM 729 (1222)
Q Consensus 706 ---e~F~~~---~~rg~~~aD~aILVVDa~ 729 (1222)
..+..+ ....++.||++|+|||+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 344443 444688999999999996
No 287
>PTZ00099 rab6; Provisional
Probab=99.08 E-value=5.3e-10 Score=118.58 Aligned_cols=109 Identities=21% Similarity=0.128 Sum_probs=75.9
Q ss_pred CeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHH-HHHHHHH-h--cCCceEEEEeeeccccCcccCCCchH
Q 000923 696 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK-M--RNTEFIVALNKVDRLYGWKTCRNAPI 771 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~-e~l~~lk-~--~~vP~IVviNKiDl~~~w~~~~~a~i 771 (1222)
.|.||||||++.|..++..+++.+|++|||+|+++....+.. .++..+. . .++|+|||+||+|+... +...
T Consensus 30 ~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~----~~v~- 104 (176)
T PTZ00099 30 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL----RKVT- 104 (176)
T ss_pred EEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc----cCCC-
Confidence 489999999999999999999999999999999885333322 2333332 2 35789999999998521 0000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 772 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 772 ~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
........... .+.++++||++|.||.+++.+|...++
T Consensus 105 ------------------~~e~~~~~~~~---------------~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 105 ------------------YEEGMQKAQEY---------------NTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred ------------------HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00111111111 136899999999999999999987664
No 288
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.07 E-value=2e-10 Score=121.18 Aligned_cols=113 Identities=20% Similarity=0.230 Sum_probs=64.9
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
+.+.|.|+|+.|+|||+|+.+|......... ..+...++ +.+ ..-....+.|||+|||.....
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS~e~n~~-~~~---------------~~~~~~~~~lvD~PGH~rlr~ 64 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTV-TSMENNIA-YNV---------------NNSKGKKLRLVDIPGHPRLRS 64 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B----SSEEEE-CCG---------------SSTCGTCECEEEETT-HCCCH
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCee-ccccCCce-EEe---------------ecCCCCEEEEEECCCcHHHHH
Confidence 3467999999999999999999765322110 00111110 000 001124599999999999866
Q ss_pred HHHhh---cccCceeEEEecccCCCChh---HHHHH----HHHH--hcCCceEEEEeeecccc
Q 000923 711 LRSRG---SGLCDIAILVVDIMHGLEPQ---TIESL----NLLK--MRNTEFIVALNKVDRLY 761 (1222)
Q Consensus 711 ~~~rg---~~~aD~aILVVDa~dGv~~q---T~e~l----~~lk--~~~vP~IVviNKiDl~~ 761 (1222)
..... +..+-++|+|||+.. +..+ +-++| .... ...+|++||+||.|+..
T Consensus 65 ~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 65 KLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp HHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred HHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 55544 778999999999874 2222 22222 1112 24689999999999974
No 289
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.05 E-value=2.5e-10 Score=126.60 Aligned_cols=132 Identities=18% Similarity=0.282 Sum_probs=65.4
Q ss_pred CeEeecCCCchhhHHHHHhhc--------ccCceeEEEecccCCCChhHHHHH-----HHHHhcCCceEEEEeeeccccC
Q 000923 696 GLLVIDTPGHESFTNLRSRGS--------GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYG 762 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg~--------~~aD~aILVVDa~dGv~~qT~e~l-----~~lk~~~vP~IVviNKiDl~~~ 762 (1222)
.+.|+||||+..|...+..+. ...=++|+++|+..-..+...-+. ....+.++|+|+|+||+|++..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 699999999988766554443 233468899998765555544322 2233468999999999999842
Q ss_pred cccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 763 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 763 w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
+ .++.-.+-.....+...+......+...+.+. -.+++....++|+|+.+++|+..|+..|...+
T Consensus 172 ~-----~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~---------l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 Y-----LEFILEWFEDPDSLEDLLESDYKKLNEEIAEL---------LDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp H-----HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHH---------CCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred h-----hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---------HhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 11111111111222211111111111111111 01233344899999999999999998886543
No 290
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.01 E-value=5.5e-10 Score=108.20 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=98.1
Q ss_pred EEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHHhhc
Q 000923 637 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 716 (1222)
Q Consensus 637 IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~rg~ 716 (1222)
++|...+|||+|+-++-.+.|..+.. ...+|..+ ... .+++ .-....+++|||.|++.|.+.+..++
T Consensus 2 llgds~~gktcllir~kdgafl~~~f---istvgid~-rnk-----li~~----~~~kvklqiwdtagqerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNF---ISTVGIDF-RNK-----LIDM----DDKKVKLQIWDTAGQERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCceecCce---eeeeeecc-ccc-----eecc----CCcEEEEEEeeccchHHHhhhhHhhh
Confidence 68999999999998886555544321 11112111 000 0000 00113499999999999999999999
Q ss_pred ccCceeEEEecccCCCChhHHH-HHHHHHhc---CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHH
Q 000923 717 GLCDIAILVVDIMHGLEPQTIE-SLNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 792 (1222)
Q Consensus 717 ~~aD~aILVVDa~dGv~~qT~e-~l~~lk~~---~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~ 792 (1222)
+.+|..+|++|+.+........ +|..+..+ .+.+.++.||||+....- +...-+.++
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~-----------------v~~ddg~kl-- 129 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERA-----------------VKRDDGEKL-- 129 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhc-----------------cccchHHHH--
Confidence 9999999999998866554443 34445444 467889999999963100 000001111
Q ss_pred HHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 793 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 793 i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
...+ .+|++.+||+||.|++-.+..|...
T Consensus 130 ----a~~y---------------~ipfmetsaktg~nvd~af~~ia~~ 158 (192)
T KOG0083|consen 130 ----AEAY---------------GIPFMETSAKTGFNVDLAFLAIAEE 158 (192)
T ss_pred ----HHHH---------------CCCceeccccccccHhHHHHHHHHH
Confidence 1112 2599999999999998777666543
No 291
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.00 E-value=1.3e-09 Score=125.79 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=65.6
Q ss_pred cCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHH
Q 000923 694 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 773 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~ 773 (1222)
...++||||+|...-.. .....+|++|||++...|-.-|.... ....+.-|||+||+|++.. +.
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaDl~~~-------~~-- 211 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKADGDNK-------TA-- 211 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhcccch-------hH--
Confidence 45699999999652211 13667999999986444433333211 0122234899999998731 00
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 774 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 774 ~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.......+...|.... .. ..+...||+++||++|.||++|++.|..+++
T Consensus 212 ------------a~~~~~el~~~L~l~~--~~------~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 212 ------------ARRAAAEYRSALRLLR--PK------DPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred ------------HHHHHHHHHHHHhccc--cc------ccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0011111222221100 00 0012258999999999999999999988765
No 292
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.98 E-value=1.3e-09 Score=115.54 Aligned_cols=171 Identities=18% Similarity=0.194 Sum_probs=105.8
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeecc-ccccchhhcccccccccCCeEeecCCCchhhH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE-NIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~-~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~ 709 (1222)
+...|+|+|...+|||+|+..+....|.......+.-+.. ..+... +. ...+.+|||.|+++|-
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys-~~v~V~dg~--------------~v~L~LwDTAGqedYD 67 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYS-ANVTVDDGK--------------PVELGLWDTAGQEDYD 67 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccce-EEEEecCCC--------------EEEEeeeecCCCcccc
Confidence 3467999999999999999999877666655444432111 111111 10 1238999999999998
Q ss_pred HHHHhhcccCceeEEEecccCCCChh--HHHHHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~q--T~e~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
.+|...+..+|++|++++..+..... ...++-.++. .++|+|+|.+|.||.. +......+..+.....
T Consensus 68 rlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~------d~~~~~~l~~~~~~~V-- 139 (198)
T KOG0393|consen 68 RLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD------DPSTLEKLQRQGLEPV-- 139 (198)
T ss_pred cccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh------CHHHHHHHHhccCCcc--
Confidence 88878888999999999877632221 2223333443 3799999999999962 1112111111100000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
..........+ .+.+.++.+||++..|+.+.++..+...
T Consensus 140 ---t~~~g~~lA~~--------------iga~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 140 ---TYEQGLELAKE--------------IGAVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred ---cHHHHHHHHHH--------------hCcceeeeehhhhhCCcHHHHHHHHHHH
Confidence 00001111111 2346899999999999999988776543
No 293
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.4e-09 Score=110.79 Aligned_cols=180 Identities=17% Similarity=0.137 Sum_probs=98.3
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
+.|.++|..|||||+|+-.|+...+.. ....|...-+.+.+ ....+++||.|||.....-.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~-TvtSiepn~a~~r~------------------gs~~~~LVD~PGH~rlR~kl 99 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRG-TVTSIEPNEATYRL------------------GSENVTLVDLPGHSRLRRKL 99 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccC-eeeeeccceeeEee------------------cCcceEEEeCCCcHHHHHHH
Confidence 359999999999999999997653221 11111112222211 12348999999999886665
Q ss_pred Hhhcc---cCceeEEEecccCCCChhHH---H----HHHHH--HhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhH
Q 000923 713 SRGSG---LCDIAILVVDIMHGLEPQTI---E----SLNLL--KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 780 (1222)
Q Consensus 713 ~rg~~---~aD~aILVVDa~dGv~~qT~---e----~l~~l--k~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~ 780 (1222)
...+. .+-.+|+|||+..- .+..+ + .+..+ ...++|++|+.||.|+... .+..-|+..|...+.
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~f-~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA---kt~~~Ir~~LEkEi~ 175 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSATF-LKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA---KTAEKIRQQLEKEIH 175 (238)
T ss_pred HHHccccccceeEEEEEecccc-chhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc---CcHHHHHHHHHHHHH
Confidence 55554 67889999998642 22211 2 22222 2346899999999999742 112223333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhh-cccc-----C-CCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 781 DVQNEFNMRLVQIVTQLKEQGMNTELYY-KNKD-----R-GETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 781 ~~~~~~~~~l~~i~~~L~e~gl~~e~~~-~~~~-----~-g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.++.... .+..+ ..+-+-+....+ ...+ . ...+.|.+.|+++| +|+++..||..+
T Consensus 176 ~lr~sRs-a~~~~---~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 176 KLRESRS-ALRSI---SDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHHHHHh-hhhcc---ccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 2222211 00000 000000000000 0011 1 25688999999999 888888877543
No 294
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.4e-09 Score=105.57 Aligned_cols=158 Identities=25% Similarity=0.239 Sum_probs=104.4
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
|...+.++|-.|+||||++-++--.++.... -|+.+....++ |++-.+.+||..|+.+...
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk---Ptigfnve~v~----------------yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK---PTIGFNVETVP----------------YKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC---CCCCcCccccc----------------cccccceeeEccCcccccH
Confidence 4456899999999999999888544332111 11112222222 3334599999999999999
Q ss_pred HHHhhcccCceeEEEecccCCC--ChhHHHHHHHHHh---cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGL--EPQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv--~~qT~e~l~~lk~---~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
.+..++..+|.+|+|||..+.. ...-.+...+|.. .+..++|++||+|..+. - .
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~-------~-----------t--- 136 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA-------L-----------T--- 136 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh-------h-----------h---
Confidence 9999999999999999998743 2333344444433 35678999999998631 0 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
-.++ +...|+.. + ....+.||..||.+|+|++..++||.+-++
T Consensus 137 ----~~E~---~~~L~l~~-L------k~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 137 ----RSEV---LKMLGLQK-L------KDRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred ----HHHH---HHHhChHH-H------hhheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 0111 12222211 0 023479999999999999999999876554
No 295
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=9.7e-10 Score=111.64 Aligned_cols=208 Identities=14% Similarity=0.107 Sum_probs=126.9
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 708 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F 708 (1222)
.-|.+.++|+|..++||||+|.+++.+-|..+....| |..++... + .+ ......+.+|||.|++.|
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktI----gvdflerq-i-----~v----~~Edvr~mlWdtagqeEf 82 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI----GVDFLERQ-I-----KV----LIEDVRSMLWDTAGQEEF 82 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhcccccccccccc----chhhhhHH-H-----Hh----hHHHHHHHHHHhccchhH
Confidence 3466789999999999999999999776655433333 33332211 1 11 111234889999999999
Q ss_pred HHHHHhhcccCceeEEEecccCCCChh-HHHHHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 709 TNLRSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 709 ~~~~~rg~~~aD~aILVVDa~dGv~~q-T~e~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
-.++..+++.+...|||++.++..... |.++.+-+.. ..+|.++|-||||++.+ ..+
T Consensus 83 DaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved------s~~-------------- 142 (246)
T KOG4252|consen 83 DAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED------SQM-------------- 142 (246)
T ss_pred HHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh------hhc--------------
Confidence 999999999999999999998865433 3333333332 36999999999999731 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHHHHHhhhccccccce-EEEEEE
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCT-VLEVKV 864 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~l~e~l~~~~~~~~~-VlEv~~ 864 (1222)
-....+.|+.. -...++.+|++...|+..++..|..-+...+-..++.+...+-. +-..+.
T Consensus 143 ----~~~evE~lak~--------------l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn~~~s 204 (246)
T KOG4252|consen 143 ----DKGEVEGLAKK--------------LHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSLNANERKQSSSSNSTYS 204 (246)
T ss_pred ----chHHHHHHHHH--------------hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhccccCCCCcc
Confidence 00111111111 01356678999999999999988877665555544432221100 000011
Q ss_pred EcCceeEEEEEEEeeeecCCCEEEEcc
Q 000923 865 IEGHGTTIDVVLVNGVLHEGDQIVVCG 891 (1222)
Q Consensus 865 ~~g~G~v~~~~V~~GtLk~GD~ivv~g 891 (1222)
..+ .++..-..+++.++++|++.+
T Consensus 205 --tsp-~s~t~~~~~t~~~~~ti~lrP 228 (246)
T KOG4252|consen 205 --TSP-PSTTVEAWVTPVPTATITLRP 228 (246)
T ss_pred --CCC-CcceeeeeeeecCCceeeech
Confidence 111 122233467788888887654
No 296
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.93 E-value=6.2e-09 Score=123.49 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=61.7
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCcee--EeeeeeEeeccccccc----hhhcc--cccccccCCeEeecCCC
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRER----TRELK--ANATLKVPGLLVIDTPG 704 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT--~~iga~~~~~~~~~~~----~~~~~--~~~~~~~~~i~~IDTPG 704 (1222)
+.|+|+|.+++|||||+++|++..+......+.| ..+|..+++......+ +.... +...+....|+||||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 4699999999999999999998876655555544 5666665533210000 00000 00011224589999999
Q ss_pred ch----h---hHHHHHhhcccCceeEEEeccc
Q 000923 705 HE----S---FTNLRSRGSGLCDIAILVVDIM 729 (1222)
Q Consensus 705 he----~---F~~~~~rg~~~aD~aILVVDa~ 729 (1222)
.. . ..+...+.++.||++|+|||+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 2 2334445588999999999996
No 297
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.92 E-value=3.8e-09 Score=102.17 Aligned_cols=137 Identities=23% Similarity=0.272 Sum_probs=93.2
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCC----chhhH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFT 709 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPG----he~F~ 709 (1222)
.+++||.+|+|||||++.|.+..+.-.. ||-+ .|. .=..||||| |..+-
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykK----TQAv-----e~~------------------d~~~IDTPGEy~~~~~~Y 55 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKK----TQAV-----EFN------------------DKGDIDTPGEYFEHPRWY 55 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcc----ccee-----ecc------------------CccccCCchhhhhhhHHH
Confidence 4899999999999999999876543221 2111 111 123699999 44443
Q ss_pred HHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.-....+..+|++++|-.++++.++ -.-..+.....|+|-+++|+|+.. ...
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s~---f~p~f~~~~~k~vIgvVTK~DLae-------------------------d~d 107 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPESR---FPPGFLDIGVKKVIGVVTKADLAE-------------------------DAD 107 (148)
T ss_pred HHHHHHhhccceeeeeecccCcccc---CCcccccccccceEEEEecccccc-------------------------hHh
Confidence 3344556678999999999886332 111233345568999999999972 123
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
+..+...|.+.| .-+||.+|+....||.+|++.|..
T Consensus 108 I~~~~~~L~eaG--------------a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 108 ISLVKRWLREAG--------------AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHHHHHcC--------------CcceEEEeccCcccHHHHHHHHHh
Confidence 445556676665 348999999999999999988764
No 298
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=7e-09 Score=101.86 Aligned_cols=153 Identities=21% Similarity=0.210 Sum_probs=102.7
Q ss_pred EEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 712 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~ 712 (1222)
.|.++|-.++|||||+-.|...... .-. |.-+..-.+++. +..+++||..|+.....++
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~~~~ip----TvGFnvetVtyk----------------N~kfNvwdvGGqd~iRplW 78 (180)
T KOG0071|consen 19 RILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYK----------------NVKFNVWDVGGQDKIRPLW 78 (180)
T ss_pred eEEEEecccCCceehhhHHhcCCCccccc----ccceeEEEEEee----------------eeEEeeeeccCchhhhHHH
Confidence 4899999999999999999644321 111 111222233333 3449999999999999999
Q ss_pred HhhcccCceeEEEecccCC--CChhHHHHHHHH---HhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 713 SRGSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dG--v~~qT~e~l~~l---k~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
.+++..+-++|+|||+.+. +...-.|.-+++ ....+|++|..||-|++...+
T Consensus 79 rhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~----------------------- 135 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK----------------------- 135 (180)
T ss_pred HhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-----------------------
Confidence 9999999999999998764 222222222333 234789999999999974311
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
..+|...|. +.. ..+....+.|+||.+|.|+.+-|.+|.+.+
T Consensus 136 --pqei~d~le---Le~-------~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 136 --PQEIQDKLE---LER-------IRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred --HHHHHHHhc---ccc-------ccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 122322221 111 113456899999999999999888887654
No 299
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.89 E-value=1e-08 Score=113.38 Aligned_cols=131 Identities=18% Similarity=0.288 Sum_probs=83.0
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEe---e--------eeeEeeccc--------ccc----chhhc
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ---I--------GATYFPAEN--------IRE----RTREL 686 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~---i--------ga~~~~~~~--------~~~----~~~~~ 686 (1222)
+..|.|+|+|+.++|||||+++|.+..+.....+.+|.. + .+.++.... +.. .+..+
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 566789999999999999999998765322222333311 1 111111110 000 00000
Q ss_pred cc-cccc------------ccCCeEeecCCCchh-------------hHHHHHhhccc-CceeEEEecccCCCChhH-HH
Q 000923 687 KA-NATL------------KVPGLLVIDTPGHES-------------FTNLRSRGSGL-CDIAILVVDIMHGLEPQT-IE 738 (1222)
Q Consensus 687 ~~-~~~~------------~~~~i~~IDTPGhe~-------------F~~~~~rg~~~-aD~aILVVDa~dGv~~qT-~e 738 (1222)
.. ...| ..+.|+||||||... ...++..++.. .+++++|||+..++..+. .+
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 00 0000 135799999999742 22345566774 469999999998888776 57
Q ss_pred HHHHHHhcCCceEEEEeeeccc
Q 000923 739 SLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 739 ~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
..+.+...+.|+|+|+||+|..
T Consensus 184 ia~~ld~~~~rti~ViTK~D~~ 205 (240)
T smart00053 184 LAKEVDPQGERTIGVITKLDLM 205 (240)
T ss_pred HHHHHHHcCCcEEEEEECCCCC
Confidence 7788888899999999999987
No 300
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.89 E-value=4.7e-09 Score=121.77 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=96.3
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh----
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 708 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F---- 708 (1222)
++++|+|.+|+|||||++.++...+....+...|..+...++.+ +.-.+++|||||.-+.
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy----------------kYlrwQViDTPGILD~plEd 232 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY----------------KYLRWQVIDTPGILDRPEED 232 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh----------------heeeeeecCCccccCcchhh
Confidence 44999999999999999999887766655555555544444333 3345999999994331
Q ss_pred -HH-HHHhhccc---CceeEEEecccC--CCChhH-HHHHHHHHh--cCCceEEEEeeeccccCcccCCCchHHHHHHHh
Q 000923 709 -TN-LRSRGSGL---CDIAILVVDIMH--GLEPQT-IESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 778 (1222)
Q Consensus 709 -~~-~~~rg~~~---aD~aILVVDa~d--Gv~~qT-~e~l~~lk~--~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q 778 (1222)
.. .+...... --+|++++|.+. |.+... ...+..++. .+.|+|+|+||||+... .++.
T Consensus 233 rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~------edL~------ 300 (620)
T KOG1490|consen 233 RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRP------EDLD------ 300 (620)
T ss_pred hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCc------cccC------
Confidence 11 11111222 234788888864 433211 112222332 37899999999999742 1111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 779 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 779 ~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
..-..++..+.+. +.++|+.+|+.+.+||.++-...+..
T Consensus 301 ---------~~~~~ll~~~~~~--------------~~v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 301 ---------QKNQELLQTIIDD--------------GNVKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred ---------HHHHHHHHHHHhc--------------cCceEEEecccchhceeeHHHHHHHH
Confidence 1112233334333 34799999999999999887665543
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.87 E-value=2.8e-09 Score=115.96 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=63.0
Q ss_pred cCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHH
Q 000923 694 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 773 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~ 773 (1222)
...+.||+|.|..... .......++.++|||+.++...+. +.......|.+|++||+|+... ...
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~----~~~---- 166 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEA----VGF---- 166 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHcccc----chh----
Confidence 3479999999931111 111223566778999886543221 2223346789999999999731 000
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 774 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 774 ~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.+..+...+...+ ...|++++||++|.|+..+++++..+
T Consensus 167 ---------------~~~~~~~~l~~~~-------------~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 167 ---------------DVEKMKADAKKIN-------------PEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred ---------------hHHHHHHHHHHhC-------------CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 0111222222211 23689999999999999999998754
No 302
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.86 E-value=2e-08 Score=116.71 Aligned_cols=172 Identities=17% Similarity=0.276 Sum_probs=89.3
Q ss_pred CEEEEEccCCCCchhhhhhhcCCccccccc--Cce---eEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGI---TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 707 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~--~GI---T~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~ 707 (1222)
..|+|+|.+|+|||||||+|++-.-.+..+ .|+ |.....|..| ..+.++|||.||...
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-----------------~~pnv~lWDlPG~gt 98 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-----------------KFPNVTLWDLPGIGT 98 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-----------------S-TTEEEEEE--GGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-----------------CCCCCeEEeCCCCCC
Confidence 569999999999999999998643221111 122 1121111111 225699999999532
Q ss_pred --h---HHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeecc-ccCcccCCCchHHHHHHHhhHH
Q 000923 708 --F---TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR-LYGWKTCRNAPIVKAIKQQNTD 781 (1222)
Q Consensus 708 --F---~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl-~~~w~~~~~a~i~~~l~~q~~~ 781 (1222)
| ..+-...+...|++|+|.+ ..+........+.++..+.|+.+|.||+|. +..-.......|.+ ...+..
T Consensus 99 ~~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~--e~~L~~ 174 (376)
T PF05049_consen 99 PNFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNE--EKLLQE 174 (376)
T ss_dssp SS--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--H--HTHHHH
T ss_pred CCCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCH--HHHHHH
Confidence 3 2223345778998887765 446666677778888899999999999996 21100001111111 001111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCC--CCChhhHHHHHHHHHHHH
Q 000923 782 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS--GEGIPDLLLLLVQWTQKT 844 (1222)
Q Consensus 782 ~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~t--GeGI~eLl~~i~~~~~~~ 844 (1222)
++ ..+...|...|+ ...+||.||+.. ...++.|.+.|..-++..
T Consensus 175 IR-------~~c~~~L~k~gv------------~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 175 IR-------ENCLENLQKAGV------------SEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HH-------HHHHHHHHCTT-------------SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HH-------HHHHHHHHHcCC------------CcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 11 223444554454 235788899864 456788888887666543
No 303
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.82 E-value=1.2e-08 Score=112.95 Aligned_cols=146 Identities=25% Similarity=0.274 Sum_probs=95.7
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCch----
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 706 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe---- 706 (1222)
..|+|+++|.+|+|||||+++|+...+..... +.++..++- +...++ +...++|.||-|+-
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~dr------LFATLDpT~----h~a~Lp-----sg~~vlltDTvGFisdLP 241 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDR------LFATLDPTL----HSAHLP-----SGNFVLLTDTVGFISDLP 241 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccch------hheeccchh----hhccCC-----CCcEEEEeechhhhhhCc
Confidence 44789999999999999999998766554332 222222211 011111 11348999999943
Q ss_pred -----hhHHHHHhhcccCceeEEEecccCCC-ChhHHHHHHHHHhcCCc-------eEEEEeeeccccCcccCCCchHHH
Q 000923 707 -----SFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNTE-------FIVALNKVDRLYGWKTCRNAPIVK 773 (1222)
Q Consensus 707 -----~F~~~~~rg~~~aD~aILVVDa~dGv-~~qT~e~l~~lk~~~vP-------~IVviNKiDl~~~w~~~~~a~i~~ 773 (1222)
.|.... .-...+|++|.|+|+++.. ..|-...+..++..++| +|=|-||+|...++.+
T Consensus 242 ~~LvaAF~ATL-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-------- 312 (410)
T KOG0410|consen 242 IQLVAAFQATL-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-------- 312 (410)
T ss_pred HHHHHHHHHHH-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------
Confidence 344333 2355689999999999964 44555567778888875 4557788887532110
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 774 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 774 ~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
. .....+++||+||.|+++++..+...
T Consensus 313 ------------------------------~----------E~n~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 313 ------------------------------E----------EKNLDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred ------------------------------c----------ccCCccccccccCccHHHHHHHHHHH
Confidence 0 11137899999999999998887643
No 304
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.80 E-value=9.5e-09 Score=101.00 Aligned_cols=155 Identities=25% Similarity=0.257 Sum_probs=103.8
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeee--EeeccccccchhhcccccccccCCeEeecCCCchh
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGAT--YFPAENIRERTRELKANATLKVPGLLVIDTPGHES 707 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~--~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~ 707 (1222)
.|...|.++|--++|||||+..|.+..+. .+|..-|.. .+.+.. . ..+++||..|+..
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~-----hltpT~GFn~k~v~~~g------------~---f~LnvwDiGGqr~ 74 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-----HLTPTNGFNTKKVEYDG------------T---FHLNVWDIGGQRG 74 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh-----hccccCCcceEEEeecC------------c---EEEEEEecCCccc
Confidence 35566999999999999999999765433 233333322 222221 1 2499999999999
Q ss_pred hHHHHHhhcccCceeEEEecccCC--CChhHHHHHHHH---HhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHH
Q 000923 708 FTNLRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 782 (1222)
Q Consensus 708 F~~~~~rg~~~aD~aILVVDa~dG--v~~qT~e~l~~l---k~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~ 782 (1222)
....+..++...|++|+|||.++. +.....++..++ +...+|+.|+.||-|++.. +
T Consensus 75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta------a------------- 135 (185)
T KOG0074|consen 75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA------A------------- 135 (185)
T ss_pred cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh------c-------------
Confidence 999999999999999999998764 222222333333 3457899999999998731 1
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 783 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 783 ~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
....+...|.-.++. .+.+.|-.+||++++|+.+-++++..
T Consensus 136 ------~~eeia~klnl~~lr----------dRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 136 ------KVEEIALKLNLAGLR----------DRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred ------chHHHHHhcchhhhh----------hceEEeeeCccccccCccCcchhhhc
Confidence 111222122111221 24578999999999999988887753
No 305
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.79 E-value=1.6e-08 Score=116.46 Aligned_cols=112 Identities=16% Similarity=0.206 Sum_probs=62.8
Q ss_pred cCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHH
Q 000923 694 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 773 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~ 773 (1222)
...++||||||...-. ...+..+|.+++|.....+-. +..+.. ....+|.+||+||+|++.. .. ..
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~e---l~~~~~-~l~~~~~ivv~NK~Dl~~~------~~-~~ 191 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDD---LQGIKA-GLMEIADIYVVNKADGEGA------TN-VT 191 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHH---HHHHHH-HHhhhccEEEEEcccccch------hH-HH
Confidence 4679999999964222 224667888888865443211 111111 1246889999999999731 00 00
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 774 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 774 ~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
.+...+...+ ..+... ...| ..++++|||++|.||.+|+.+|..+.
T Consensus 192 -------~~~~~~~~~l----~~l~~~---------~~~~--~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 192 -------IARLMLALAL----EEIRRR---------EDGW--RPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred -------HHHHHHHHHH----hhcccc---------ccCC--CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 0000000000 001000 0011 24799999999999999999998764
No 306
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.77 E-value=1.1e-08 Score=111.70 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=108.2
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCccc---ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCC-
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG- 704 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~---~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPG- 704 (1222)
.-+.|.++++|..|+|||+||+.++..... .....|-||.|..+.+ +..++++|.||
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-------------------~~~~~~vDlPG~ 193 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-------------------GKSWYEVDLPGY 193 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-------------------cceEEEEecCCc
Confidence 346688999999999999999999765421 1113455665544432 13599999999
Q ss_pred ---------chhhHHHHHhhccc---CceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHH
Q 000923 705 ---------HESFTNLRSRGSGL---CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 772 (1222)
Q Consensus 705 ---------he~F~~~~~rg~~~---aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~ 772 (1222)
-.+|..++..++-. .=.+.|+||++-++++.....+..|.+.++|+.+|+||||+.. ...+.
T Consensus 194 ~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k--~~~~~---- 267 (320)
T KOG2486|consen 194 GRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK--KVKRT---- 267 (320)
T ss_pred ccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhh--hcccc----
Confidence 23455555444322 2347888999999999999999999999999999999999862 21100
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 773 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 773 ~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
...+...+...| ..| ... -+.-..|++.+|+.|+.|++.|+-.|.+..
T Consensus 268 --~kKp~~~i~~~f--------~~l-----~~~------~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 268 --GKKPGLNIKINF--------QGL-----IRG------VFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred --ccCccccceeeh--------hhc-----ccc------ceeccCCceeeecccccCceeeeeehhhhh
Confidence 000000000000 011 100 112345788999999999999987776543
No 307
>PTZ00258 GTP-binding protein; Provisional
Probab=98.75 E-value=6.2e-08 Score=113.99 Aligned_cols=100 Identities=14% Similarity=0.010 Sum_probs=66.0
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeecccccc-chhhcccccccccCCeEeecCCCch--
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRE-RTRELKANATLKVPGLLVIDTPGHE-- 706 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~-~~~~~~~~~~~~~~~i~~IDTPGhe-- 706 (1222)
.++..|+|+|.+|+|||||+++|++..+.....++.|++.....+++...+- ....+.....+....|.|+||||..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 3455699999999999999999998887777777777654444444332210 0011111111223469999999943
Q ss_pred -----hhHHHHHhhcccCceeEEEeccc
Q 000923 707 -----SFTNLRSRGSGLCDIAILVVDIM 729 (1222)
Q Consensus 707 -----~F~~~~~rg~~~aD~aILVVDa~ 729 (1222)
...+.....++.||++|+|||+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 13444556678899999999984
No 308
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=98.75 E-value=3.7e-08 Score=93.34 Aligned_cols=90 Identities=24% Similarity=0.393 Sum_probs=70.6
Q ss_pred cceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccccCcEEeec
Q 000923 856 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 935 (1222)
Q Consensus 856 ~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa~g~~i~~~ 935 (1222)
+++|+|++.+++.|++++++|++|+|++||.|+++ ..+++||+|+++.+. ..+++.++++ +.+.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~gkVr~l~d~~g~----------~v~~a~Ps~~--V~I~ 65 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAG----TTYGKVRAMFDENGK----------RVKEAGPSTP--VEIL 65 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEc----ccccEEEEEECCCCC----------CCCEECCCCc--EEEc
Confidence 68999999999999999999999999999988763 346799999988741 1233344444 4446
Q ss_pred Ccccc-cCCCceEEeCCCccHHHHHHH
Q 000923 936 GLEHA-IAGTGLYVVGPDDDLEDVKEE 961 (1222)
Q Consensus 936 gL~~~-~aG~~l~v~~~e~~~~~~~~~ 961 (1222)
||+.. .+|+.|+++.++.+++.+.+.
T Consensus 66 G~~~~P~aGd~~~~~~se~~Ak~~~~~ 92 (95)
T cd03702 66 GLKGVPQAGDKFLVVESEKEAKEIAEY 92 (95)
T ss_pred CCCCCCCCCCEEEEeCCHHHHHHHHHH
Confidence 99874 899999999998887766543
No 309
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.74 E-value=1.1e-07 Score=106.28 Aligned_cols=116 Identities=18% Similarity=0.097 Sum_probs=71.7
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 708 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F 708 (1222)
...++|+|+|.+|+|||||+|+|++..+. .+...+.|..+..+...+ ....|+||||||..++
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~----------------~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV----------------DGFKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE----------------CCeEEEEEECCCcCcc
Confidence 34567999999999999999999987642 222333444433332222 1235999999996654
Q ss_pred H-----H-----HHHhhcc--cCceeEEEecccC-CCChhHHHHHHHHHh-cC----CceEEEEeeecccc
Q 000923 709 T-----N-----LRSRGSG--LCDIAILVVDIMH-GLEPQTIESLNLLKM-RN----TEFIVALNKVDRLY 761 (1222)
Q Consensus 709 ~-----~-----~~~rg~~--~aD~aILVVDa~d-Gv~~qT~e~l~~lk~-~~----vP~IVviNKiDl~~ 761 (1222)
. . ...+++. ..|++|+|...+. .+.......++.+.. ++ .++|||+|++|...
T Consensus 93 ~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 93 VMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 2 1 1222332 4577777755543 344444455555544 23 47999999999864
No 310
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.74 E-value=1.8e-08 Score=105.34 Aligned_cols=64 Identities=31% Similarity=0.418 Sum_probs=46.9
Q ss_pred cCCeEeecCCCchh----hHHHHHhhcccCceeEEEecccCCCChhHHHHHHH-HHhcCCceEEEEeee
Q 000923 694 VPGLLVIDTPGHES----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNL-LKMRNTEFIVALNKV 757 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~----F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~-lk~~~vP~IVviNKi 757 (1222)
..+++||||||..+ ...++..++..+|++|+|+++.+.+..+....|.. +....-.+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 35699999999643 23567778899999999999999777665555544 444555688899985
No 311
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.68 E-value=3.5e-08 Score=106.74 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=61.3
Q ss_pred CCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHH
Q 000923 695 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA 774 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~ 774 (1222)
..++||.|.|.. ...... ...+|.+|+|||+.++..-+.. + ..+....-++++||+|+... ..
T Consensus 92 ~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~---~~qi~~ad~~~~~k~d~~~~----~~------ 154 (199)
T TIGR00101 92 LEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK-G---GPGITRSDLLVINKIDLAPM----VG------ 154 (199)
T ss_pred CCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh-h---HhHhhhccEEEEEhhhcccc----cc------
Confidence 458899999921 100001 1236889999999876552211 1 11222233899999999721 00
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 775 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 775 l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
..+..+...+...+ ...+++++||++|+||.+|+++|..+
T Consensus 155 -------------~~~~~~~~~~~~~~-------------~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 155 -------------ADLGVMERDAKKMR-------------GEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred -------------ccHHHHHHHHHHhC-------------CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 01122222333221 23689999999999999999998754
No 312
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=4.3e-08 Score=99.33 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=77.3
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
...++++|--|+|||||+..|-..+..... -|.|..+-.+. +.+-.++.+|..||..-...
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv---PTlHPTSE~l~----------------Ig~m~ftt~DLGGH~qArr~ 80 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELS----------------IGGMTFTTFDLGGHLQARRV 80 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccC---CCcCCChHHhe----------------ecCceEEEEccccHHHHHHH
Confidence 346999999999999999999655432211 12222222211 11234899999999988888
Q ss_pred HHhhcccCceeEEEecccCCCC-hhHHHHHHHHH----hcCCceEEEEeeecccc
Q 000923 712 RSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLY 761 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~-~qT~e~l~~lk----~~~vP~IVviNKiDl~~ 761 (1222)
+..++..+|.+|++||+-+.-. ...++.+..|. ..++|++|..||||+++
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 8889999999999999976422 22333333332 35899999999999985
No 313
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.66 E-value=2.9e-07 Score=101.47 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=84.2
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccc-cccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH-
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 711 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~-~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~- 711 (1222)
+|++||..++||||+...+.....+. ...-|.|.++....+... ..-.++|||+||+..|...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~---------------~~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL---------------SFLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT---------------TSCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC---------------CCcEEEEEEcCCcccccccc
Confidence 48999999999999999887553321 111233433332222111 1124999999999877554
Q ss_pred ----HHhhcccCceeEEEecccCCCChhH----HHHHHHHHhc--CCceEEEEeeeccccCcccCCCchHHHHHHHhhHH
Q 000923 712 ----RSRGSGLCDIAILVVDIMHGLEPQT----IESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 781 (1222)
Q Consensus 712 ----~~rg~~~aD~aILVVDa~dGv~~qT----~e~l~~lk~~--~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~ 781 (1222)
+...++.+.++|+|+|+...--... ...+..+... ++.+.|+++|||++. .+.+.
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~-------~~~r~-------- 130 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS-------EDERE-------- 130 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS--------HHHHH--------
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC-------HHHHH--------
Confidence 4566889999999999983222222 2333444443 678999999999973 12111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCC
Q 000923 782 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG 827 (1222)
Q Consensus 782 ~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tG 827 (1222)
..+......+...+...+++ .+.++.+|....
T Consensus 131 --~~~~~~~~~i~~~~~~~~~~------------~~~~~~TSI~D~ 162 (232)
T PF04670_consen 131 --EIFRDIQQRIRDELEDLGIE------------DITFFLTSIWDE 162 (232)
T ss_dssp --HHHHHHHHHHHHHHHHTT-T------------SEEEEEE-TTST
T ss_pred --HHHHHHHHHHHHHhhhcccc------------ceEEEeccCcCc
Confidence 12223334455555544432 468899998874
No 314
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=98.63 E-value=1.6e-07 Score=89.39 Aligned_cols=88 Identities=28% Similarity=0.476 Sum_probs=69.0
Q ss_pred cceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cCcEEee
Q 000923 856 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QGIKITA 934 (1222)
Q Consensus 856 ~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g~~i~~ 934 (1222)
+++|+|++.++++|++++++|++|+|++||+|+++ ..+++||+|++... +.+..+ ++..+.+
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~GkVr~~~d~~g-------------~~v~~a~Ps~~v~i 64 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAG----GTYGKIRTMVDENG-------------KALLEAGPSTPVEI 64 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEEC----CccceEEEEECCCC-------------CCccccCCCCCEEE
Confidence 68999999999999999999999999999998864 44678888876551 222222 4555567
Q ss_pred cCccc-ccCCCceEEeCCCccHHHHHH
Q 000923 935 QGLEH-AIAGTGLYVVGPDDDLEDVKE 960 (1222)
Q Consensus 935 ~gL~~-~~aG~~l~v~~~e~~~~~~~~ 960 (1222)
.|+.. +.+|+.|+++.++.++..+..
T Consensus 65 ~g~~~~p~aGd~~~~~~~e~~a~~~~~ 91 (95)
T cd03701 65 LGLKDVPKAGDGVLVVASEKEAKEIGS 91 (95)
T ss_pred eeecCCccCCCEEEEeCCCHHHHHhhH
Confidence 78876 689999999999987765543
No 315
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.62 E-value=9.9e-08 Score=110.34 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=76.1
Q ss_pred CEEEEEccCCCCchhhhhhhcCC----cccc------------cccCceeEeee-eeEeeccccccchhhcccccccccC
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGT----NVQE------------GEAGGITQQIG-ATYFPAENIRERTRELKANATLKVP 695 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~----~v~~------------~e~~GIT~~ig-a~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1222)
..|+|+|++++|||||+++|... ++.. ....|-|+... ..++|..... +.....+ ..
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvE-----I~~~~~~-~~ 91 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVE-----ININEGT-KF 91 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceE-----EeccCCC-cc
Confidence 45999999999999999999877 4331 12233111110 1122222111 1111000 13
Q ss_pred CeEeecCCCchh-------------------------hHHH----HHhhcc-cCceeEEEe-ccc------CCCChhHHH
Q 000923 696 GLLVIDTPGHES-------------------------FTNL----RSRGSG-LCDIAILVV-DIM------HGLEPQTIE 738 (1222)
Q Consensus 696 ~i~~IDTPGhe~-------------------------F~~~----~~rg~~-~aD~aILVV-Da~------dGv~~qT~e 738 (1222)
.+.||||+|+.+ |..- +...+. .+|++|||. |++ ++.......
T Consensus 92 ~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~ 171 (492)
T TIGR02836 92 KVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEER 171 (492)
T ss_pred cEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHH
Confidence 599999999432 2111 223455 799999999 775 456666778
Q ss_pred HHHHHHhcCCceEEEEeeecc
Q 000923 739 SLNLLKMRNTEFIVALNKVDR 759 (1222)
Q Consensus 739 ~l~~lk~~~vP~IVviNKiDl 759 (1222)
.+..|+..++|||+++|++|-
T Consensus 172 ~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 172 VIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHhcCCCEEEEEECcCC
Confidence 899999999999999999994
No 316
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.57 E-value=5.8e-07 Score=102.21 Aligned_cols=115 Identities=16% Similarity=0.091 Sum_probs=68.1
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccc-cccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 708 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~-~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F 708 (1222)
...++|+|+|.+|+|||||+|+|++..+.. ....+.|.+....... +....|+||||||..+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~----------------~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT----------------RAGFTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE----------------ECCeEEEEEECCCCCch
Confidence 455679999999999999999999876432 1111111111111111 11245999999997654
Q ss_pred HHHH-------Hhhc--ccCceeEEEecccC-CCChhHHHHHHHHHhc-----CCceEEEEeeeccc
Q 000923 709 TNLR-------SRGS--GLCDIAILVVDIMH-GLEPQTIESLNLLKMR-----NTEFIVALNKVDRL 760 (1222)
Q Consensus 709 ~~~~-------~rg~--~~aD~aILVVDa~d-Gv~~qT~e~l~~lk~~-----~vP~IVviNKiDl~ 760 (1222)
..+. ..++ ...|++|||+..+. .+.......+..+... -.++||++|+.|..
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 2211 1111 24788999965432 3444444445444432 24799999999976
No 317
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.56 E-value=7.5e-08 Score=105.82 Aligned_cols=107 Identities=24% Similarity=0.292 Sum_probs=61.8
Q ss_pred cCCeEeecCCC--chhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchH
Q 000923 694 VPGLLVIDTPG--HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 771 (1222)
Q Consensus 694 ~~~i~~IDTPG--he~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i 771 (1222)
...+.||-|-| +...- ....+|++|||+-...|-.-|.+.. .++ .++=|+|+||.|+...
T Consensus 121 G~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~Ka-Gim---EiaDi~vVNKaD~~gA--------- 182 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKA-GIM---EIADIFVVNKADRPGA--------- 182 (266)
T ss_dssp T-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-T-THH---HH-SEEEEE--SHHHH---------
T ss_pred CCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhh-hhh---hhccEEEEeCCChHHH---------
Confidence 34589999976 43332 3678999999998877766555322 011 1256999999997521
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 772 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 772 ~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
... ...+...|.-.. ... .+-..||+.+||.+|.||++|++.|..+.
T Consensus 183 --------~~~-------~~~l~~~l~l~~-~~~-------~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 183 --------DRT-------VRDLRSMLHLLR-ERE-------DGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp --------HHH-------HHHHHHHHHHCS-TSC-------TSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred --------HHH-------HHHHHHHHhhcc-ccc-------cCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 111 111222221111 000 11236999999999999999999998764
No 318
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.56 E-value=5.3e-08 Score=102.23 Aligned_cols=164 Identities=20% Similarity=0.171 Sum_probs=86.9
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEee----c-cccc---cchh-hc--cc----------ccc
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFP----A-ENIR---ERTR-EL--KA----------NAT 691 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~----~-~~~~---~~~~-~~--~~----------~~~ 691 (1222)
..|.|+|++|||||||+.+++..-......+-||.++...... . ...+ ..+. .+ .. ...
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 5699999999999999999874332223333344433221000 0 0000 0000 00 00 001
Q ss_pred cccCCeEeecCCCchhhHHHHHhhcccCc-eeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCch
Q 000923 692 LKVPGLLVIDTPGHESFTNLRSRGSGLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 770 (1222)
Q Consensus 692 ~~~~~i~~IDTPGhe~F~~~~~rg~~~aD-~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~ 770 (1222)
+....++||-+.| .... .......| +.|+|||...|..---.-+-.+. .-=++||||+|+.+.
T Consensus 94 ~~~~Dll~iEs~G--NL~~--~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~----~aDllVInK~DLa~~-------- 157 (202)
T COG0378 94 FPDLDLLFIESVG--NLVC--PFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIF----KADLLVINKTDLAPY-------- 157 (202)
T ss_pred CCcCCEEEEecCc--ceec--ccCcchhhceEEEEEECCCCCCCcccCCCcee----EeeEEEEehHHhHHH--------
Confidence 1223688888888 1110 01123345 78999999887532110000000 024789999999731
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 771 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 771 i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
++..+..+.....+ +.+..|||.+|++||+|+.+++.|+...
T Consensus 158 ---------------v~~dlevm~~da~~-------------~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 158 ---------------VGADLEVMARDAKE-------------VNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred ---------------hCccHHHHHHHHHH-------------hCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 11111222222221 2356799999999999999998888643
No 319
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.56 E-value=1.6e-07 Score=104.22 Aligned_cols=175 Identities=21% Similarity=0.251 Sum_probs=95.0
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccc-------------cCc-----------eeEeeeeeEeeccccccchhh
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-------------AGG-----------ITQQIGATYFPAENIRERTRE 685 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e-------------~~G-----------IT~~iga~~~~~~~~~~~~~~ 685 (1222)
-+.++|+|.|.||+|||||++.|...-+..|. .+| ++.+.++|.-+... +.....
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~s-rG~lGG 127 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPS-RGTLGG 127 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCC-Cccchh
Confidence 46678999999999999999998632221111 111 22233333332221 111111
Q ss_pred ccc-------ccccccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeec
Q 000923 686 LKA-------NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 758 (1222)
Q Consensus 686 ~~~-------~~~~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiD 758 (1222)
+.. -++--...+.||-|-|.-.- -.-....+|++|+|.-..-|-.-|.+.. . .+.+-=||||||.|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~-G---imEiaDi~vINKaD 200 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKA-G---IMEIADIIVINKAD 200 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHh-h---hhhhhheeeEeccC
Confidence 110 00111345889999763111 1113457899888887766666665533 1 12334589999999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 759 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 759 l~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
+.. ++ ..... +...|.... .+|... +-..|++.+||.+|+||++|++.|.
T Consensus 201 ~~~-------A~----------~a~r~-------l~~al~~~~----~~~~~~--~W~ppv~~t~A~~g~Gi~~L~~ai~ 250 (323)
T COG1703 201 RKG-------AE----------KAARE-------LRSALDLLR----EVWREN--GWRPPVVTTSALEGEGIDELWDAIE 250 (323)
T ss_pred hhh-------HH----------HHHHH-------HHHHHHhhc----cccccc--CCCCceeEeeeccCCCHHHHHHHHH
Confidence 752 11 01111 111111110 111111 2346999999999999999999998
Q ss_pred HHHH
Q 000923 839 QWTQ 842 (1222)
Q Consensus 839 ~~~~ 842 (1222)
.+..
T Consensus 251 ~h~~ 254 (323)
T COG1703 251 DHRK 254 (323)
T ss_pred HHHH
Confidence 7653
No 320
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.52 E-value=1.7e-07 Score=105.79 Aligned_cols=101 Identities=25% Similarity=0.283 Sum_probs=57.2
Q ss_pred CeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHH
Q 000923 696 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 775 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l 775 (1222)
.+.||++-|.-....... + ..+..|.|++...|.. +. +.+-..+..+-||+|||+|++.. .
T Consensus 186 d~liIEnvGnLvcPa~fd--l-ge~~~v~vlsV~eg~d-kp---lKyp~~f~~ADIVVLNKiDLl~~------~------ 246 (290)
T PRK10463 186 GILFIENVGNLVCPASFD--L-GEKHKVAVLSVTEGED-KP---LKYPHMFAAASLMLLNKVDLLPY------L------ 246 (290)
T ss_pred cEEEEECCCCccCCCccc--h-hhceeEEEEECccccc-cc---hhccchhhcCcEEEEEhHHcCcc------c------
Confidence 577888877411100000 0 1123456666666532 11 12223345678999999999731 0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 776 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 776 ~~q~~~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
...+..+...+... ....+||++||++|+|++.|+++|..
T Consensus 247 -----------~~dle~~~~~lr~l-------------np~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 247 -----------NFDVEKCIACAREV-------------NPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred -----------HHHHHHHHHHHHhh-------------CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 01122233333322 13468999999999999999998865
No 321
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=3.3e-07 Score=104.66 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=31.3
Q ss_pred ccCCCcccccccCCCCCCCcccccccc------ccccCCCCCCCcccccccCCC
Q 000923 216 DLLDDEDEDVREDKDEEDEPVIFTDKK------KKSKKSGKNSSTFDLLVNEND 263 (1222)
Q Consensus 216 ~~~~d~~~~~~~~~~~e~~~v~~~~kk------kk~kk~~k~~~~~~~~~~~~~ 263 (1222)
++..+++....+.+++++++|.++... ++.+|+++++..+-+|+|++.
T Consensus 38 ~~s~~edvt~~nr~~~d~e~i~~~~q~kqq~~~kkq~kk~kkgkr~~d~~de~e 91 (807)
T KOG0066|consen 38 GDSSDEDVTTRNRDNEDLESIASSNQSKQQTAGKKQAKKGKKGKRNNDWSDEDE 91 (807)
T ss_pred CccchhhhhhccccchhHHHHhhhhhHHHHHHHHHHhhhcccccccCCCCcccc
Confidence 344555555566777888888754432 344566888888888987544
No 322
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=2.9e-06 Score=95.60 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=85.5
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccc---cCceeEeeeeeEeeccc-cccchhhcccccc--------------
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE---AGGITQQIGATYFPAEN-IRERTRELKANAT-------------- 691 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e---~~GIT~~iga~~~~~~~-~~~~~~~~~~~~~-------------- 691 (1222)
...|.|.++|.-..||||+|++|+...+..-+ ......-+.+.+-+... +..+...+.....
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 34577999999999999999999976554211 11111111111100000 0000000000000
Q ss_pred c--------ccCCeEeecCCCc-----------hhhHHHHHhhcccCceeEEEecccC-CCChhHHHHHHHHHhcCCceE
Q 000923 692 L--------KVPGLLVIDTPGH-----------ESFTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMRNTEFI 751 (1222)
Q Consensus 692 ~--------~~~~i~~IDTPGh-----------e~F~~~~~rg~~~aD~aILVVDa~d-Gv~~qT~e~l~~lk~~~vP~I 751 (1222)
| ....|+||||||. .+|+......+..||++||++|+.. .+.+.+.+.|..|+-..-.+-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiR 215 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIR 215 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeE
Confidence 0 0235999999993 3577777777889999999999864 578999999999999888899
Q ss_pred EEEeeecccc
Q 000923 752 VALNKVDRLY 761 (1222)
Q Consensus 752 VviNKiDl~~ 761 (1222)
||+||.|.+.
T Consensus 216 VVLNKADqVd 225 (532)
T KOG1954|consen 216 VVLNKADQVD 225 (532)
T ss_pred EEeccccccC
Confidence 9999999973
No 323
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.43 E-value=1.6e-06 Score=94.95 Aligned_cols=111 Identities=25% Similarity=0.253 Sum_probs=68.4
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccc--cCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh----
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 707 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e--~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~---- 707 (1222)
+|+|+|..|+|||||+|.|++..+.... ..++|.........+. ...|+||||||..+
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~----------------g~~v~VIDTPGl~d~~~~ 65 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVD----------------GRQVTVIDTPGLFDSDGS 65 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEET----------------TEEEEEEE--SSEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeec----------------ceEEEEEeCCCCCCCccc
Confidence 5999999999999999999988754322 2334444333332222 24599999999432
Q ss_pred ---hHHHHHh----hcccCceeEEEecccCCCChhHHHHHHHHHhc-C----CceEEEEeeecccc
Q 000923 708 ---FTNLRSR----GSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-N----TEFIVALNKVDRLY 761 (1222)
Q Consensus 708 ---F~~~~~r----g~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~-~----vP~IVviNKiDl~~ 761 (1222)
......+ .....+++|||+... .++......|..+... + ..+||++|..|...
T Consensus 66 ~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 66 DEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE 130 (212)
T ss_dssp HHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc
Confidence 1122222 234578899999987 6777777777666542 2 35899999999763
No 324
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.42 E-value=3.5e-07 Score=108.71 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=75.0
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~ 709 (1222)
.+..+|+|+|..|+|||||+-+|+...+... |-.-+--+.+|.+ +.-.....+|+||+-...-.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~----VP~rl~~i~IPad------------vtPe~vpt~ivD~ss~~~~~ 70 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA----VPRRLPRILIPAD------------VTPENVPTSIVDTSSDSDDR 70 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcccc----ccccCCccccCCc------------cCcCcCceEEEecccccchh
Confidence 4455699999999999999999987655432 1111111111211 11111238999998655544
Q ss_pred HHHHhhcccCceeEEEecccCC--CChhHHHHHHHHHhc-----CCceEEEEeeeccccC
Q 000923 710 NLRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLLKMR-----NTEFIVALNKVDRLYG 762 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dG--v~~qT~e~l~~lk~~-----~vP~IVviNKiDl~~~ 762 (1222)
.....-++.+|++++|++.++. +..-+..+|-++++. ++|+|+|.||+|...+
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 5556678899999999988762 222222344455543 6899999999999754
No 325
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.5e-07 Score=108.11 Aligned_cols=66 Identities=32% Similarity=0.393 Sum_probs=58.6
Q ss_pred CCeEeecCCCchhhHHHHHhhcccCceeEEEecccCC-------CChhHHHHHHHHHhcCC-ceEEEEeeeccc
Q 000923 695 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIVALNKVDRL 760 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dG-------v~~qT~e~l~~lk~~~v-P~IVviNKiDl~ 760 (1222)
..+++||.|||.+|...+..+.+.+|.++|+|.+.-| ...||++|..+...+++ ++|+.+||||-.
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 155 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeeccccc
Confidence 4599999999999999999999999999999998432 46899999999999974 789999999975
No 326
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=8e-07 Score=92.18 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=102.2
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
...++++|..+.||||++.+.+...+...-...+.....-+.+..+ .....+..|||.|++.|..+
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn--------------~g~irf~~wdtagqEk~ggl 75 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTN--------------RGQIRFNVWDTAGQEKKGGL 75 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecc--------------cCcEEEEeeecccceeeccc
Confidence 4568999999999999999998776654322222111111111111 01124899999999999999
Q ss_pred HHhhcccCceeEEEecccCCCChhHHHHH--HHHHh-cCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEPQTIESL--NLLKM-RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 788 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~qT~e~l--~~lk~-~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~ 788 (1222)
+-.++-..-++|+++|....+.-+....| .+++. .++|++++.||+|....
T Consensus 76 rdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r-------------------------- 129 (216)
T KOG0096|consen 76 RDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKAR-------------------------- 129 (216)
T ss_pred ccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecccc--------------------------
Confidence 88888888899999999876655544444 22332 36899999999997520
Q ss_pred HHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 789 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 789 ~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
. .....+. + ....++.++.+||+++.|+..-+.++.+.
T Consensus 130 -~------~k~k~v~---~----~rkknl~y~~iSaksn~NfekPFl~LarK 167 (216)
T KOG0096|consen 130 -K------VKAKPVS---F----HRKKNLQYYEISAKSNYNFERPFLWLARK 167 (216)
T ss_pred -c------cccccce---e----eecccceeEEeecccccccccchHHHhhh
Confidence 0 0000000 0 11356789999999999998887777653
No 327
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.37 E-value=2.2e-06 Score=85.83 Aligned_cols=117 Identities=22% Similarity=0.167 Sum_probs=79.7
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCcee-EeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh-
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF- 708 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT-~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F- 708 (1222)
+...|+++|.-++|||+||..|+..+...+..---| -++....+...... ...+.|.||.|...+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rga-------------rE~l~lyDTaGlq~~~ 74 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGA-------------REQLRLYDTAGLQGGQ 74 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCCh-------------hheEEEeecccccCch
Confidence 456799999999999999999987765443322122 23333333322110 124899999998888
Q ss_pred HHHHHhhcccCceeEEEecccCCCChhHHHHHHHH-Hh----cCCceEEEEeeeccc
Q 000923 709 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL-KM----RNTEFIVALNKVDRL 760 (1222)
Q Consensus 709 ~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~l-k~----~~vP~IVviNKiDl~ 760 (1222)
..+-..++..+|+.|||++.++.-..|-.+.|.-- .. -.+|++|..||+|+.
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 66667788889999999999885444444444221 11 258999999999995
No 328
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.37 E-value=2.2e-06 Score=97.58 Aligned_cols=115 Identities=23% Similarity=0.335 Sum_probs=66.8
Q ss_pred CEEEEEccCCCCchhhhhhhcCCccccccc------Cc--eeEeeeeeEeeccccccchhhcccccccccCCeEeecCCC
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA------GG--ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 704 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~------~G--IT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPG 704 (1222)
++|.|+|..|+|||||++.|++..+..... .. -|..+....+.... . .. ...|+||||||
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e---~------~~---~l~LtiiDTpG 72 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEE---N------GV---KLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEE---T------CE---EEEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEecc---C------Cc---ceEEEEEeCCC
Confidence 469999999999999999999865433210 00 01111111111100 0 00 12499999999
Q ss_pred chhh------------------HHHHH------h---hcccCceeEEEeccc-CCCChhHHHHHHHHHhcCCceEEEEee
Q 000923 705 HESF------------------TNLRS------R---GSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNK 756 (1222)
Q Consensus 705 he~F------------------~~~~~------r---g~~~aD~aILVVDa~-dGv~~qT~e~l~~lk~~~vP~IVviNK 756 (1222)
+.+. ..... | .=...|++|++|+++ +|+.+..++.++.|... +++|-||.|
T Consensus 73 fGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaK 151 (281)
T PF00735_consen 73 FGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAK 151 (281)
T ss_dssp CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEEST
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEec
Confidence 4321 11110 1 011257899999985 78999898888887765 789999999
Q ss_pred eccc
Q 000923 757 VDRL 760 (1222)
Q Consensus 757 iDl~ 760 (1222)
.|..
T Consensus 152 aD~l 155 (281)
T PF00735_consen 152 ADTL 155 (281)
T ss_dssp GGGS
T ss_pred cccc
Confidence 9987
No 329
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.35 E-value=1.9e-06 Score=89.25 Aligned_cols=95 Identities=19% Similarity=0.157 Sum_probs=67.1
Q ss_pred hHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 708 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 708 F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
|..+..+.+..+|++|+|+|+.++...+....+.++...+.|+|+|+||+|+... ..
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-------~~---------------- 58 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK-------EV---------------- 58 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH-------HH----------------
Confidence 4456666777899999999998877766666666666678999999999998620 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
..... .+... ...+++++||++|.|+..|+..|..+++
T Consensus 59 --~~~~~-~~~~~--------------~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 59 --LEKWK-SIKES--------------EGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred --HHHHH-HHHHh--------------CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 00000 01000 1247999999999999999998876654
No 330
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=5.4e-06 Score=95.40 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=67.0
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccccCcee--EeeeeeEeeccccccchhhcccccccccCCeEeecCCCch---
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE--- 706 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT--~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe--- 706 (1222)
.+.|+|+|-||+|||||+++|+...+....++..| ...|..+++.......+.-..+...+....+.|+|.+|..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 35699999999999999999998775544444444 5567777665332222211222222333469999999832
Q ss_pred ----hhHHHHHhhcccCceeEEEeccc
Q 000923 707 ----SFTNLRSRGSGLCDIAILVVDIM 729 (1222)
Q Consensus 707 ----~F~~~~~rg~~~aD~aILVVDa~ 729 (1222)
-..+....-++.+|.++.||++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 24566667788999999999986
No 331
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.25 E-value=1e-06 Score=99.66 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=60.8
Q ss_pred EEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeecccccc-chhhcccccccccCCeEeecCCCch-------
Q 000923 635 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRE-RTRELKANATLKVPGLLVIDTPGHE------- 706 (1222)
Q Consensus 635 V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~-~~~~~~~~~~~~~~~i~~IDTPGhe------- 706 (1222)
|+|+|.+++|||||+++|++.++..+..++.|++.....+.+...+. ....+.....+....|.|+||||..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 58999999999999999999887766667777554333333322110 0000000011112359999999932
Q ss_pred hhHHHHHhhcccCceeEEEecccC
Q 000923 707 SFTNLRSRGSGLCDIAILVVDIMH 730 (1222)
Q Consensus 707 ~F~~~~~rg~~~aD~aILVVDa~d 730 (1222)
...+.....++.||++|+|||+..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcC
Confidence 233445556788999999999853
No 332
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.20 E-value=2.4e-06 Score=99.66 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=62.8
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEe--eeeeEeeccccccchhhcccccccccCCeEeecCCCchh---
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 707 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~--iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~--- 707 (1222)
+.|+|+|.+|+|||||+++|++........++.|++ +|...++...... ...+.....+....|.|+||||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~-l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDK-LAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchh-hHHhcCCccccCceEEEEECCCCCCCCC
Confidence 469999999999999999999887666666666654 4555544321100 0000000011123599999999422
Q ss_pred ----hHHHHHhhcccCceeEEEecccC
Q 000923 708 ----FTNLRSRGSGLCDIAILVVDIMH 730 (1222)
Q Consensus 708 ----F~~~~~rg~~~aD~aILVVDa~d 730 (1222)
..+...+.++.||++|+|||+..
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 33445566789999999999863
No 333
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=3.3e-06 Score=99.10 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=66.7
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccc-c--ccCceeEeeeeeEeecccccc--chhhccc------------ccccc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-G--EAGGITQQIGATYFPAENIRE--RTRELKA------------NATLK 693 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~-~--e~~GIT~~iga~~~~~~~~~~--~~~~~~~------------~~~~~ 693 (1222)
+..+|+|+|++|+||||++..|....+.. + ..+-||.+.... -..+.... ....++. ...+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~-ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRI-GGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccc-cHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 44579999999999999999986432211 1 011122111000 00000000 0000000 01234
Q ss_pred cCCeEeecCCCchh---hHHHHHhhc---ccCceeEEEecccCCCChhHHHHHHHHHhcCCc-------eEEEEeeeccc
Q 000923 694 VPGLLVIDTPGHES---FTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-------FIVALNKVDRL 760 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~---F~~~~~rg~---~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-------~IVviNKiDl~ 760 (1222)
...++||||||... +.......+ ..+.-.+||++++.+....+.-.+.+....++| -=+++||+|-.
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 56799999999653 222222222 334557999999987655444333443333332 24678999975
No 334
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2.7e-06 Score=102.64 Aligned_cols=58 Identities=67% Similarity=0.843 Sum_probs=49.7
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000923 501 GKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEE 558 (1222)
Q Consensus 501 ~~~~~~~~~~~~~~~e~~e~~~~~~~~Ee~~~~eeeer~~~eeee~~~~ee~er~~~~ 558 (1222)
...+....+.+..++.|||..++++++|++.+|++|||+|+++++++++++.|+++++
T Consensus 203 ak~Kk~~kk~~Kgv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eE 260 (1064)
T KOG1144|consen 203 AKGKKAEKKKPKGVRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEE 260 (1064)
T ss_pred hhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556667788999999999999999999999999999999999998888887776
No 335
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.15 E-value=4.3e-07 Score=93.66 Aligned_cols=158 Identities=20% Similarity=0.172 Sum_probs=104.2
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.+.|+|..++|||+++.+.+..++.......|..++....+.|+.. ...++.|||..|++.|.+|+.
T Consensus 27 k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~-------------t~vRlqLwdIagQerfg~mtr 93 (229)
T KOG4423|consen 27 KVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDK-------------TIVRLQLWDIAGQERFGNMTR 93 (229)
T ss_pred hhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChH-------------HHHHHHHhcchhhhhhcceEE
Confidence 4899999999999999998876665433333433333222333221 113489999999999999999
Q ss_pred hhcccCceeEEEecccCCCChhHHHHH-HHHHh-----cC--CceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM-----RN--TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 785 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~-----~~--vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~ 785 (1222)
-++..+.++.+|+|.+......-...| +-+-. .+ +|+|+..||||... |..
T Consensus 94 Vyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~-~a~-------------------- 152 (229)
T KOG4423|consen 94 VYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK-SAK-------------------- 152 (229)
T ss_pred EEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh-Hhh--------------------
Confidence 999999999999999876543332223 22221 13 56888999999852 100
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 786 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 786 ~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
......+.+.-.+.| +.-++.+|++.+.+|++....|+..
T Consensus 153 -~~~~~~~d~f~keng--------------f~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 153 -NEATRQFDNFKKENG--------------FEGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred -hhhHHHHHHHHhccC--------------ccceeeeccccccChhHHHHHHHHH
Confidence 011112222333333 3468899999999999988887754
No 336
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.13 E-value=2.2e-05 Score=89.98 Aligned_cols=117 Identities=25% Similarity=0.382 Sum_probs=75.4
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccc------c----CceeEeeeeeEeeccccccchhhcccccccccCCeEe
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE------A----GGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 699 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e------~----~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 699 (1222)
-.+++|.++|..|.|||||++.|+++.+.... + .++.+.+....+..++.. ..|++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~--------------~~l~v 86 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFH--------------LNLTV 86 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeE--------------EEEEE
Confidence 35578999999999999999999977443321 1 122223322222222211 24999
Q ss_pred ecCCCchhhHHH------------------------HHhhccc----CceeEEEecc-cCCCChhHHHHHHHHHhcCCce
Q 000923 700 IDTPGHESFTNL------------------------RSRGSGL----CDIAILVVDI-MHGLEPQTIESLNLLKMRNTEF 750 (1222)
Q Consensus 700 IDTPGhe~F~~~------------------------~~rg~~~----aD~aILVVDa-~dGv~~qT~e~l~~lk~~~vP~ 750 (1222)
|||||.-+|... ..|.... .+++|+.+.. .+|+.+..++.+..+... +.+
T Consensus 87 IDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNl 165 (373)
T COG5019 87 IDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNL 165 (373)
T ss_pred eccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCe
Confidence 999996554211 0011112 4668888876 479999999988777654 668
Q ss_pred EEEEeeecccc
Q 000923 751 IVALNKVDRLY 761 (1222)
Q Consensus 751 IVviNKiDl~~ 761 (1222)
|-||.|.|...
T Consensus 166 IPVI~KaD~lT 176 (373)
T COG5019 166 IPVIAKADTLT 176 (373)
T ss_pred eeeeeccccCC
Confidence 88999999873
No 337
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.12 E-value=1.1e-05 Score=83.89 Aligned_cols=91 Identities=21% Similarity=0.152 Sum_probs=62.7
Q ss_pred HHhhcccCceeEEEecccCCCChhHHHHHHHHHhc--CCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000923 712 RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 712 ~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~--~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~ 789 (1222)
.++.+..+|++|+|||+.+............+... ++|+|+|+||+|+... . .
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~------~-------------------~ 56 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT------W-------------------V 56 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH------H-------------------H
Confidence 46778899999999999987766666666666543 4899999999999621 0 0
Q ss_pred HHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 790 l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
+......+... ..+.++++||++|.|+..|++.|..++
T Consensus 57 ~~~~~~~~~~~--------------~~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 57 TARWVKILSKE--------------YPTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred HHHHHHHHhcC--------------CcEEEEEeeccccccHHHHHHHHHHHH
Confidence 11111122111 012368999999999999998886543
No 338
>PRK14974 cell division protein FtsY; Provisional
Probab=98.09 E-value=4.9e-06 Score=96.73 Aligned_cols=64 Identities=23% Similarity=0.167 Sum_probs=37.7
Q ss_pred CCeEeecCCCchhh----HHHHHhh--cccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 695 PGLLVIDTPGHESF----TNLRSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F----~~~~~rg--~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
..+.||||||.... ....... ...+|.++||+|++.|- ...+.+......--+--+++||+|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 45999999995432 2221111 23478999999997653 22222333222112356789999985
No 339
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.06 E-value=4.1e-05 Score=93.79 Aligned_cols=112 Identities=19% Similarity=0.127 Sum_probs=65.5
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccc-ccc-CceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhH-
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQE-GEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 709 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~-~e~-~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~- 709 (1222)
++|+|||.+|+|||||+|.|++..+.. ... .++|. +..+...+ ....|+||||||..+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~i----------------dG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLV----------------QGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEE----------------CCceEEEEECCCCCcccc
Confidence 459999999999999999999876332 211 23332 21111111 12359999999965421
Q ss_pred -----HH----HHhhcc--cCceeEEEecccCC-CChhHHHHHHHHHhc-C----CceEEEEeeecccc
Q 000923 710 -----NL----RSRGSG--LCDIAILVVDIMHG-LEPQTIESLNLLKMR-N----TEFIVALNKVDRLY 761 (1222)
Q Consensus 710 -----~~----~~rg~~--~aD~aILVVDa~dG-v~~qT~e~l~~lk~~-~----vP~IVviNKiDl~~ 761 (1222)
.. ..+.+. .+|++|||+..... ........++.+... + -.+||++|..|...
T Consensus 182 dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 182 DQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 11 222333 47888888765422 212233344444331 2 36899999999874
No 340
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.06 E-value=1.2e-05 Score=86.14 Aligned_cols=104 Identities=21% Similarity=0.157 Sum_probs=66.3
Q ss_pred CCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHH
Q 000923 703 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 782 (1222)
Q Consensus 703 PGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~ 782 (1222)
|.+..|..++..++..+|++|+|||+.+......... .....+.|+|+|+||+|+...+ . ....
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~-----~-~~~~-------- 82 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKD-----K-NLVR-------- 82 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCC-----C-CHHH--------
Confidence 5555578899999999999999999987543222222 2233578999999999996311 0 0000
Q ss_pred HHHHHHHHHHHHH--HHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHH
Q 000923 783 QNEFNMRLVQIVT--QLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 841 (1222)
Q Consensus 783 ~~~~~~~l~~i~~--~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~ 841 (1222)
+..... .....++ ...++|++||++|.|+.+|+..|..++
T Consensus 83 -------~~~~~~~~~~~~~~~------------~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 83 -------IKNWLRAKAAAGLGL------------KPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred -------HHHHHHHHHHhhcCC------------CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 000000 0011111 113689999999999999999887665
No 341
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.05 E-value=2e-05 Score=84.97 Aligned_cols=80 Identities=20% Similarity=0.247 Sum_probs=53.6
Q ss_pred EEEEEccCCCCchhhhhhhcCCccc--ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH-
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN- 710 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~--~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~- 710 (1222)
.|+++|.|.+||||||..|+.+.-. .++....|.-.|.. .|++..|.++|.||...-.+
T Consensus 64 RValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi------------------~y~ga~IQllDLPGIieGAsq 125 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVI------------------HYNGANIQLLDLPGIIEGASQ 125 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceE------------------EecCceEEEecCccccccccc
Confidence 4999999999999999999876432 23332233222222 24445699999999644321
Q ss_pred ------HHHhhcccCceeEEEecccCC
Q 000923 711 ------LRSRGSGLCDIAILVVDIMHG 731 (1222)
Q Consensus 711 ------~~~rg~~~aD~aILVVDa~dG 731 (1222)
.+...++-+|++++|+|++.+
T Consensus 126 gkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 126 GKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred CCCCCceEEEEeecccEEEEEecCCcc
Confidence 223346668999999999864
No 342
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.05 E-value=9.7e-06 Score=90.69 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=63.6
Q ss_pred hhhHHHHHhhcccCceeEEEecccCCC-ChhHH-HHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHH
Q 000923 706 ESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 783 (1222)
Q Consensus 706 e~F~~~~~rg~~~aD~aILVVDa~dGv-~~qT~-e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~ 783 (1222)
+.|..++...++.+|.+|+|+|+.+.. ..... .++..+...++|+|||+||+||... ... .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~------~~~-----------~ 86 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDD------EDM-----------E 86 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCC------HHH-----------H
Confidence 455556666789999999999998643 33333 3344555678999999999999621 000 0
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHH
Q 000923 784 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 839 (1222)
Q Consensus 784 ~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~ 839 (1222)
......+... .++++.+||++|.||.+|+..|..
T Consensus 87 -------~~~~~~~~~~---------------g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 87 -------KEQLDIYRNI---------------GYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -------HHHHHHHHHC---------------CCeEEEEecCCchhHHHHHhhhcC
Confidence 0111112211 248999999999999999987764
No 343
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.04 E-value=2e-05 Score=83.24 Aligned_cols=99 Identities=22% Similarity=0.208 Sum_probs=67.7
Q ss_pred CCCchh-hHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhH
Q 000923 702 TPGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 780 (1222)
Q Consensus 702 TPGhe~-F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~ 780 (1222)
-|||.. ..+.....+..+|++|+|+|+.++........+..+ .+.|+|+++||+|++.. .
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~-------~---------- 62 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP-------K---------- 62 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh-------H----------
Confidence 478754 456677888999999999999887665444444433 36799999999998621 0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 781 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 781 ~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.+......+... ...++++||++|.|+..|+..|..+++
T Consensus 63 --------~~~~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 63 --------KTKKWLKYFESK---------------GEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred --------HHHHHHHHHHhc---------------CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 000011111111 136899999999999999999887654
No 344
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.01 E-value=6.8e-06 Score=88.98 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=54.2
Q ss_pred EEEEEccCCCCchhhhhhhcCCc--ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh---
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 708 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~--v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F--- 708 (1222)
.|+++|.+.+|||||+..|.++. ++.++....|. +++...|+.+.|.++|.||...-
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~------------------vpG~~~y~gaKiqlldlpgiiegakd 122 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTT------------------VPGVIRYKGAKIQLLDLPGIIEGAKD 122 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEE------------------ecceEeccccceeeecCcchhccccc
Confidence 48999999999999999998754 33333222221 12223355577999999996432
Q ss_pred ----HHHHHhhcccCceeEEEecccCC
Q 000923 709 ----TNLRSRGSGLCDIAILVVDIMHG 731 (1222)
Q Consensus 709 ----~~~~~rg~~~aD~aILVVDa~dG 731 (1222)
...+...++-|+++++|+|+...
T Consensus 123 gkgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 123 GKGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred CCCCccEEEEEeecccEEEEEeeccCc
Confidence 22344556779999999998653
No 345
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.00 E-value=2.5e-05 Score=78.53 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=100.3
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHH
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 710 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~ 710 (1222)
-...|+++|....|||||+-...+...... .|+..|..++..... .+.. ...+.|||..|++.|.+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~----~~q~~GvN~mdkt~~-i~~t---------~IsfSIwdlgG~~~~~n 84 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEE----YTQTLGVNFMDKTVS-IRGT---------DISFSIWDLGGQREFIN 84 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHH----HHHHhCccceeeEEE-ecce---------EEEEEEEecCCcHhhhc
Confidence 345699999999999999998876654322 334444433321110 0000 02388999999999999
Q ss_pred HHHhhcccCceeEEEecccCCCChhH-HHHHHHHHhcCC--ceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQT-IESLNLLKMRNT--EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 787 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~qT-~e~l~~lk~~~v--P~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~ 787 (1222)
+..-....+-++++++|.+...+-.. .++.++++..+. -.|++.+|.|+.-.. ..+....+..|..
T Consensus 85 ~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~l----p~e~Q~~I~~qar------- 153 (205)
T KOG1673|consen 85 MLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDL----PPELQETISRQAR------- 153 (205)
T ss_pred cCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcC----CHHHHHHHHHHHH-------
Confidence 98888888888999999886443322 455577777653 236689998875211 1111111111110
Q ss_pred HHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 788 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 788 ~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
.... -+ ..+.|++|+.+..||..++..+.
T Consensus 154 --------~YAk-~m-------------nAsL~F~Sts~sINv~KIFK~vl 182 (205)
T KOG1673|consen 154 --------KYAK-VM-------------NASLFFCSTSHSINVQKIFKIVL 182 (205)
T ss_pred --------HHHH-Hh-------------CCcEEEeeccccccHHHHHHHHH
Confidence 0000 01 24889999999999999887664
No 346
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.98 E-value=6.1e-05 Score=78.15 Aligned_cols=84 Identities=23% Similarity=0.239 Sum_probs=56.8
Q ss_pred ceeEEEecccCCCChhHHHHH-HHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000923 720 DIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 798 (1222)
Q Consensus 720 D~aILVVDa~dGv~~qT~e~l-~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~~L~ 798 (1222)
|++|+|+|+.++......... ..+...++|+|+|+||+|++.. . .+...+..+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~-------~------------------~~~~~~~~~~ 55 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK-------E------------------VLRKWLAYLR 55 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH-------H------------------HHHHHHHHHH
Confidence 789999999886655544444 4566778999999999999621 0 0001111111
Q ss_pred HcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHH
Q 000923 799 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 842 (1222)
Q Consensus 799 e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~ 842 (1222)
.. ...+++++||.+|.|+..|++.|.....
T Consensus 56 ~~--------------~~~~ii~vSa~~~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 56 HS--------------YPTIPFKISATNGQGIEKKESAFTKQTN 85 (155)
T ss_pred hh--------------CCceEEEEeccCCcChhhHHHHHHHHhH
Confidence 11 1247899999999999999998876543
No 347
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.97 E-value=3.3e-05 Score=88.02 Aligned_cols=99 Identities=20% Similarity=0.219 Sum_probs=68.1
Q ss_pred CCchh-hHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHH
Q 000923 703 PGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 781 (1222)
Q Consensus 703 PGhe~-F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~ 781 (1222)
|||.. ........+..+|++|+|+|+..+..........++ .+.|+|+|+||+|++.. ..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~------~~----------- 65 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP------AV----------- 65 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH------HH-----------
Confidence 89865 345567788999999999999876655444444444 36899999999999621 00
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHH
Q 000923 782 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 843 (1222)
Q Consensus 782 ~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~ 843 (1222)
+......+... .++++++||.+|.|+..|+..|..+++.
T Consensus 66 --------~~~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 66 --------TKQWLKYFEEK---------------GIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred --------HHHHHHHHHHc---------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 00111111111 1378999999999999999988877654
No 348
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.94 E-value=1.8e-05 Score=91.76 Aligned_cols=65 Identities=20% Similarity=0.141 Sum_probs=37.6
Q ss_pred cCCeEeecCCCchhhHH-------HHHhh-----cccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 694 VPGLLVIDTPGHESFTN-------LRSRG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~-------~~~rg-----~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
...+.||||||...+.. ...+. ...++.++||+|++.|.... .........--+.-+++||+|..
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~--~~a~~f~~~~~~~giIlTKlD~t 272 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNAL--SQAKAFHEAVGLTGIILTKLDGT 272 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHH--HHHHHHHhhCCCCEEEEECCCCC
Confidence 35699999999543211 11111 23467899999999654321 12222221112457889999964
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.92 E-value=2.2e-05 Score=89.06 Aligned_cols=64 Identities=22% Similarity=0.202 Sum_probs=39.3
Q ss_pred cCCeEeecCCCchhhHHHHH-------hhc-----ccCceeEEEecccCCCChhHHHHHHHHH-hcCCceEEEEeeeccc
Q 000923 694 VPGLLVIDTPGHESFTNLRS-------RGS-----GLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDRL 760 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~~-------rg~-----~~aD~aILVVDa~dGv~~qT~e~l~~lk-~~~vP~IVviNKiDl~ 760 (1222)
...+.||||||+........ +.+ ..+|.++||+|++.| ..+........ ..+ +.-+++||+|-.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~-~~g~IlTKlDe~ 230 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVG-LTGIILTKLDGT 230 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCC-CCEEEEEccCCC
Confidence 35699999999654322211 122 248999999999754 33333333322 233 467889999975
No 350
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00021 Score=82.66 Aligned_cols=117 Identities=26% Similarity=0.351 Sum_probs=71.6
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccccc-cCc----e--eEeeeeeEeeccccccchhhcccccccccCCeEeecCCC
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGG----I--TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 704 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e-~~G----I--T~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPG 704 (1222)
.+++.++|..|.|||||+|.|+.+.+.... ..+ + |..+..+.+... .. .+ .-.|++|||||
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie---e~------g~---~l~LtvidtPG 88 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE---EN------GV---KLNLTVIDTPG 88 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec---CC------Ce---EEeeEEeccCC
Confidence 378999999999999999999876443220 000 0 111111111110 00 00 02499999999
Q ss_pred chhhHHH------------------------HHh-hcc--cCceeEEEeccc-CCCChhHHHHHHHHHhcCCceEEEEee
Q 000923 705 HESFTNL------------------------RSR-GSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNK 756 (1222)
Q Consensus 705 he~F~~~------------------------~~r-g~~--~aD~aILVVDa~-dGv~~qT~e~l~~lk~~~vP~IVviNK 756 (1222)
.-++... ..| .+. ..+++|+.|... +|+.|..++.+..+.. .+.+|-||-|
T Consensus 89 fGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~K 167 (366)
T KOG2655|consen 89 FGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAK 167 (366)
T ss_pred CcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeec
Confidence 5443110 001 111 356788888864 7899999888877655 4778889999
Q ss_pred ecccc
Q 000923 757 VDRLY 761 (1222)
Q Consensus 757 iDl~~ 761 (1222)
.|...
T Consensus 168 aD~lT 172 (366)
T KOG2655|consen 168 ADTLT 172 (366)
T ss_pred cccCC
Confidence 99873
No 351
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.90 E-value=1.8e-05 Score=94.37 Aligned_cols=65 Identities=18% Similarity=0.088 Sum_probs=40.4
Q ss_pred cCCeEeecCCCchhh----HHHHHh--hcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 694 VPGLLVIDTPGHESF----TNLRSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F----~~~~~r--g~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
...+.||||||.... ...... ....+|.++||+|++.|... ......+...--+.-+++||+|-.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 356999999995432 122222 23347889999999877443 223333333334677889999975
No 352
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.89 E-value=1.4e-05 Score=83.17 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=40.2
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 705 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh 705 (1222)
...|+|+|.+|+|||||+|+|++... ..+...|.|.+...+.. . .++.||||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~--~-----------------~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL--M-----------------KRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc--C-----------------CCEEEEECcCC
Confidence 34689999999999999999997653 45666777765432221 1 34899999994
No 353
>PRK12289 GTPase RsgA; Reviewed
Probab=97.88 E-value=3.6e-05 Score=90.21 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=59.2
Q ss_pred hhcccCceeEEEecccCCC-Ch-hHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHH
Q 000923 714 RGSGLCDIAILVVDIMHGL-EP-QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 791 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv-~~-qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~ 791 (1222)
..+..+|.+|||+|+.+.. .+ +...++..+...++|+|||+||+|++.. . .+.
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~------~-------------------~~~ 139 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP------T-------------------EQQ 139 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh------H-------------------HHH
Confidence 3478899999999998642 33 2344555566679999999999999731 0 001
Q ss_pred HHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 792 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 792 ~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.....+...| +++|++||.+|.||.+|+..|...
T Consensus 140 ~~~~~~~~~g---------------~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 140 QWQDRLQQWG---------------YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHHHHhcC---------------CeEEEEEcCCCCCHHHHhhhhccc
Confidence 1111222222 478999999999999999887643
No 354
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.87 E-value=1.4e-05 Score=84.50 Aligned_cols=56 Identities=20% Similarity=0.447 Sum_probs=42.7
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 705 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh 705 (1222)
+...|+|+|.+|+|||||+|+|++... ..+...|+|.+...+.+. ..+.|+||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-------------------~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-------------------KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-------------------CCEEEEECcCC
Confidence 345799999999999999999998653 556777888765433321 24899999994
No 355
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.81 E-value=7.5e-05 Score=85.61 Aligned_cols=101 Identities=20% Similarity=0.214 Sum_probs=69.6
Q ss_pred CCCchhh-HHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhH
Q 000923 702 TPGHESF-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 780 (1222)
Q Consensus 702 TPGhe~F-~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~ 780 (1222)
-|||..= .......+..+|++|+|+|+..++..........+. +.|+|+|+||+|+... .
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~-------~---------- 67 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP-------E---------- 67 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH-------H----------
Confidence 4898653 455677888999999999998876655544444443 7899999999998620 0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHHHHHH
Q 000923 781 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 844 (1222)
Q Consensus 781 ~~~~~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~~~~~ 844 (1222)
.+......+... .++++++||.++.|+..|+..|..+++..
T Consensus 68 --------~~~~~~~~~~~~---------------~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 68 --------VTKKWIEYFEEQ---------------GIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred --------HHHHHHHHHHHc---------------CCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 001111112111 14789999999999999999888776543
No 356
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.81 E-value=3.8e-05 Score=80.16 Aligned_cols=63 Identities=24% Similarity=0.177 Sum_probs=37.5
Q ss_pred cCCeEeecCCCchhhHHH--------HHhhcccCceeEEEecccCCCChh--HHHHHHHHHhcCCceEEEEeeecc
Q 000923 694 VPGLLVIDTPGHESFTNL--------RSRGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKMRNTEFIVALNKVDR 759 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~--------~~rg~~~aD~aILVVDa~dGv~~q--T~e~l~~lk~~~vP~IVviNKiDl 759 (1222)
.+.+.||||||...-..+ .......+|.+|+|||+....... ......++... =+|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 356899999995432222 122344578899999986533211 11222344443 3779999996
No 357
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.80 E-value=6.7e-05 Score=76.59 Aligned_cols=50 Identities=26% Similarity=0.170 Sum_probs=42.1
Q ss_pred HHHhhcccCceeEEEecccCCCChhHHHHHHHHHhc--CCceEEEEeeeccc
Q 000923 711 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRL 760 (1222)
Q Consensus 711 ~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~--~vP~IVviNKiDl~ 760 (1222)
...+.+..+|++|+|+|+.++...+.......+... ++|+|+|+||+|++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 456778899999999999988877766677777665 89999999999986
No 358
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=97.75 E-value=8.5e-05 Score=69.31 Aligned_cols=81 Identities=20% Similarity=0.165 Sum_probs=58.9
Q ss_pred ccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhc-cccCcE
Q 000923 853 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIK 931 (1222)
Q Consensus 853 ~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~g~~ 931 (1222)
.||.+.|+.+.++++.|.+++++|++|+|+.|+.|.+.......+.+|..+.... ..++. +.+|.+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~-------------~~~v~~~~aGdI 68 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNREEKIKITELRVFNNGE-------------VVTADTVTAGDI 68 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCCCcEEEeceeEEEeCCC-------------eEECcEECCCCE
Confidence 4788999999999999999999999999999999876541112233333332211 11222 337999
Q ss_pred EeecCcccccCCCce
Q 000923 932 ITAQGLEHAIAGTGL 946 (1222)
Q Consensus 932 i~~~gL~~~~aG~~l 946 (1222)
+++.||+.+.+|++|
T Consensus 69 ~ai~gl~~~~~Gdtl 83 (85)
T cd03690 69 AILTGLKGLRVGDVL 83 (85)
T ss_pred EEEECCCCCcCcccc
Confidence 999999999999987
No 359
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=8.4e-05 Score=90.02 Aligned_cols=64 Identities=20% Similarity=0.115 Sum_probs=37.0
Q ss_pred cCCeEeecCCCchhhHHHH------HhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 694 VPGLLVIDTPGHESFTNLR------SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~------~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
...++||||||...+.... .+.. .....+|||++..+... ..+.+..+... .+.-|++||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~D-l~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSD-LDEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhH-HHHHHHHHHhh-CCeEEEEecCcCc
Confidence 4679999999964332211 1111 23456888887754322 22334444333 4677999999975
No 360
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=8.6e-05 Score=86.91 Aligned_cols=64 Identities=17% Similarity=0.078 Sum_probs=37.3
Q ss_pred CCeEeecCCCchhhH----HHHHhh--cccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 695 PGLLVIDTPGHESFT----NLRSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~----~~~~rg--~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
..++||||||..... ....+. ....+.++||++++.+. ....+.+..+...++ -=|++||+|-.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~i-dglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCC-CEEEEEcccCC
Confidence 469999999954321 112222 23467789999986432 122344444444332 35678999975
No 361
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.70 E-value=5.8e-05 Score=90.79 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=39.0
Q ss_pred CCeEeecCCCchhhHHH------HHhhcccCceeEEEecccCCCChhHHHHHHHHHhcC--Cc-eEEEEeeeccc
Q 000923 695 PGLLVIDTPGHESFTNL------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TE-FIVALNKVDRL 760 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~~~------~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~--vP-~IVviNKiDl~ 760 (1222)
..++||||||...+... ....+..+|.++||+|++.| . ..+..++.++ ++ .-|++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q---~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--Q---QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--H---HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 36999999995443211 12234568999999999876 2 3334444432 33 35788999964
No 362
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.69 E-value=4.8e-05 Score=82.27 Aligned_cols=64 Identities=22% Similarity=0.173 Sum_probs=37.1
Q ss_pred CCeEeecCCCchhhHHH----HH--hhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 695 PGLLVIDTPGHESFTNL----RS--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~~~----~~--rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
..+.||||||+..+... +. ......+-++||++++.+.... ..........++- =+++||+|-.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~-~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL-EQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH-HHHHHHHHHSSTC-EEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH-HHHHHHhhcccCc-eEEEEeecCC
Confidence 45999999995443221 11 1122467899999998764322 2333333334444 4559999976
No 363
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.68 E-value=0.0002 Score=67.79 Aligned_cols=84 Identities=20% Similarity=0.255 Sum_probs=61.4
Q ss_pred ccccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cC--
Q 000923 853 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QG-- 929 (1222)
Q Consensus 853 ~~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g-- 929 (1222)
.||+++|.++|.+.|.|+++.|+|.+|+|+.||.|.+++.+ .. ..|++++.++..+..+ +|
T Consensus 3 ~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~--~~--------------~~V~sI~~~~~~~~~a~aG~~ 66 (91)
T cd03693 3 KPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG--VT--------------GEVKSVEMHHEPLEEALPGDN 66 (91)
T ss_pred CCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC--cE--------------EEEEEEEECCcCcCEECCCCE
Confidence 47899999999999999999999999999999999987653 22 3455556666655544 33
Q ss_pred cEEeecCcccccCCCceEEeCCC
Q 000923 930 IKITAQGLEHAIAGTGLYVVGPD 952 (1222)
Q Consensus 930 ~~i~~~gL~~~~aG~~l~v~~~e 952 (1222)
+.+.+.+++......+.+++.++
T Consensus 67 v~i~l~~i~~~~v~~G~vl~~~~ 89 (91)
T cd03693 67 VGFNVKNVSKKDIKRGDVAGDSK 89 (91)
T ss_pred EEEEECCCCHHHcCCcCEEccCC
Confidence 66777787654444555666543
No 364
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.67 E-value=0.00076 Score=75.51 Aligned_cols=86 Identities=16% Similarity=0.311 Sum_probs=47.5
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecC-CCchhhHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDT-PGHESFTNL 711 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDT-PGhe~F~~~ 711 (1222)
-.|.|+|..++||||||.+|-+..- ....+| ++..++...... ..++...++.++|- ++|......
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~-~Kkgsg----LeY~yl~V~de~--------RDd~tr~~VWiLDGd~~h~~LLk~ 119 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSET-VKKGSG----LEYLYLHVHDED--------RDDLTRCNVWILDGDLYHKGLLKF 119 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhcccc-cCCCCC----cceEEEeccccc--------chhhhhcceEEecCchhhhhHHhh
Confidence 4599999999999999999965431 111122 222222221110 00111123566665 667666655
Q ss_pred HHhhcccCce-eEEEecccCC
Q 000923 712 RSRGSGLCDI-AILVVDIMHG 731 (1222)
Q Consensus 712 ~~rg~~~aD~-aILVVDa~dG 731 (1222)
.....+.++. +||+++.+..
T Consensus 120 al~ats~aetlviltasms~P 140 (473)
T KOG3905|consen 120 ALPATSLAETLVILTASMSNP 140 (473)
T ss_pred cccccCccceEEEEEEecCCc
Confidence 5555555555 6677776654
No 365
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.67 E-value=4.2e-05 Score=78.07 Aligned_cols=53 Identities=21% Similarity=0.458 Sum_probs=37.2
Q ss_pred EEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 705 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh 705 (1222)
.|+|+|.+|+|||||+++|++... ......|.|.+...+.+ ...+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL-------------------TPTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe-------------------CCCEEEEECCCc
Confidence 599999999999999999987654 23334455554322111 124899999996
No 366
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.66 E-value=0.00033 Score=75.44 Aligned_cols=116 Identities=25% Similarity=0.316 Sum_probs=68.6
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCccccc-----ccCce--eEeeeeeEeeccccccchhhcccccccccCCeEeecCCC
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQEG-----EAGGI--TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 704 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~~-----e~~GI--T~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPG 704 (1222)
.+.|.|+|..|.|||||++.|....+... .+--| |..+.+..... .+.... -.|++|||||
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvi---eE~gVk---------lkltviDTPG 113 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVI---EEKGVK---------LKLTVIDTPG 113 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeee---eecceE---------EEEEEecCCC
Confidence 45799999999999999999975543321 11111 22222211111 111000 2499999999
Q ss_pred chhhHHH--------------------------HHhhccc--CceeEEEeccc-CCCChhHHHHHHHHHhcCCceEEEEe
Q 000923 705 HESFTNL--------------------------RSRGSGL--CDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALN 755 (1222)
Q Consensus 705 he~F~~~--------------------------~~rg~~~--aD~aILVVDa~-dGv~~qT~e~l~~lk~~~vP~IVviN 755 (1222)
+-++.+. |.+.+.. ..++++.|.++ +.+.|-.++.+..|... +.+|-||-
T Consensus 114 fGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIa 192 (336)
T KOG1547|consen 114 FGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIA 192 (336)
T ss_pred cccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEe
Confidence 5443221 2222222 34577777765 56888888888776553 45677888
Q ss_pred eeccc
Q 000923 756 KVDRL 760 (1222)
Q Consensus 756 KiDl~ 760 (1222)
|.|..
T Consensus 193 kaDtl 197 (336)
T KOG1547|consen 193 KADTL 197 (336)
T ss_pred ecccc
Confidence 99976
No 367
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.66 E-value=9.7e-05 Score=68.53 Aligned_cols=74 Identities=32% Similarity=0.501 Sum_probs=60.2
Q ss_pred ccc-CCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccccc
Q 000923 1102 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1179 (1222)
Q Consensus 1102 vf~-~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~ 1179 (1222)
+|+ ...+.|+.-+|..|.|++|..+.+ +.+ ..++|.||+.+++++.+|.+|+.|+|.|.+.+. +++.
T Consensus 8 ~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~---~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~--------~~i~ 76 (83)
T cd03696 8 VFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG---EETRVRSIQVHGKDVEEAKAGDRVALNLTGVDA--------KDLE 76 (83)
T ss_pred EEEcCCcEEEEEEEEeecEEeCCCEEEECCCC---ceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCH--------HHcC
Confidence 454 233445666999999999999988 444 479999999999999999999999999987532 5899
Q ss_pred cCCeEEE
Q 000923 1180 IEDELVS 1186 (1222)
Q Consensus 1180 ~~d~l~s 1186 (1222)
.||+|.|
T Consensus 77 ~G~vl~~ 83 (83)
T cd03696 77 RGDVLSS 83 (83)
T ss_pred CccEEcC
Confidence 9998865
No 368
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.65 E-value=4.8e-05 Score=78.94 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=40.7
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCc-ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 705 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~-v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh 705 (1222)
+...|+|+|++++|||||+++|++.. ...+...|+|.+.....+. ..++||||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-------------------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-------------------CCEEEEECCCC
Confidence 44669999999999999999999765 3444556666665433221 34999999994
No 369
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.64 E-value=3e-05 Score=80.67 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=23.7
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCC
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGT 655 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~ 655 (1222)
.++..+++|+|+.|+|||||+|+|+..
T Consensus 32 ~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 32 LLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345678999999999999999999876
No 370
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=97.64 E-value=0.00021 Score=66.63 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=57.9
Q ss_pred ccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCC----ceeeeeeeccCCCCCcceeeeeeeeehhhhccccCc
Q 000923 855 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQG----PIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGI 930 (1222)
Q Consensus 855 ~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g----~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa~g~ 930 (1222)
|++.|+.+.+++..|.++.++|++|+|++||.|.++..+. ..+..|..+..+.. ....+ +.+|.
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~----------~~v~~--~~aG~ 68 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKR----------VEVEE--AEAGD 68 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCe----------eECcE--ECCCC
Confidence 4688999999999999999999999999999998776532 22334433332221 11111 23688
Q ss_pred EEeecCcccccCCCce
Q 000923 931 KITAQGLEHAIAGTGL 946 (1222)
Q Consensus 931 ~i~~~gL~~~~aG~~l 946 (1222)
++.+.||+.+.+|+++
T Consensus 69 I~~i~gl~~~~~Gdtl 84 (86)
T cd03691 69 IVAIAGIEDITIGDTI 84 (86)
T ss_pred EEEEECCCCCccccee
Confidence 8999999999999887
No 371
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00016 Score=84.51 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.7
Q ss_pred CCCEEEEEccCCCCchhhhhhhcC
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRG 654 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~ 654 (1222)
+..+|+|+|+.|+||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998863
No 372
>PRK12288 GTPase RsgA; Reviewed
Probab=97.63 E-value=0.00053 Score=80.52 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=59.1
Q ss_pred cccCceeEEEecccCCCChhHHHHH-HHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000923 716 SGLCDIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 794 (1222)
Q Consensus 716 ~~~aD~aILVVDa~dGv~~qT~e~l-~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~ 794 (1222)
+..+|.+++|++....+....++.| ..+...++|+|||+||+|+...+ . . ..+....
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~------~-~---------------~~~~~~~ 175 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE------G-R---------------AFVNEQL 175 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcH------H-H---------------HHHHHHH
Confidence 5678999999998776666554443 44556789999999999997310 0 0 0011111
Q ss_pred HHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 795 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 795 ~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
..+... .+++|++||++|.|+.+|+..|...
T Consensus 176 ~~y~~~---------------g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 176 DIYRNI---------------GYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred HHHHhC---------------CCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 112111 1489999999999999999888653
No 373
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00029 Score=85.81 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=74.9
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEee-------e---eeEeec--ccc-----ccchhhccc----
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-------G---ATYFPA--ENI-----RERTRELKA---- 688 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~i-------g---a~~~~~--~~~-----~~~~~~~~~---- 688 (1222)
.+.-+|+|.|.+++||||++|+++...+..+..+.+|.-+ | ....+. ..+ ......+..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4667799999999999999999987665443333222110 0 000000 000 000000000
Q ss_pred ------ccccc-------cCCeEeecCCCc---hhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEE
Q 000923 689 ------NATLK-------VPGLLVIDTPGH---ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV 752 (1222)
Q Consensus 689 ------~~~~~-------~~~i~~IDTPGh---e~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IV 752 (1222)
.+-|. -..+.+||.||. ..++.......-.+|++|||+++..-++......+..+...+-.++|
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFI 266 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFI 266 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEE
Confidence 00111 125999999994 34555566667779999999999775544444444444444334666
Q ss_pred EEeeeccc
Q 000923 753 ALNKVDRL 760 (1222)
Q Consensus 753 viNKiDl~ 760 (1222)
+.||.|..
T Consensus 267 lnnkwDas 274 (749)
T KOG0448|consen 267 LNNKWDAS 274 (749)
T ss_pred Eechhhhh
Confidence 77888986
No 374
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.60 E-value=5.6e-05 Score=81.10 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=37.5
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcc---------cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCC
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNV---------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP 703 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v---------~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTP 703 (1222)
..|+|+|.+|+|||||+|+|++... .....+|+|.+.-.+.+. ..+.|||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-------------------~~~~~~DtP 188 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-------------------NGKKLYDTP 188 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-------------------CCCEEEeCc
Confidence 4599999999999999999986542 223344555554332221 148999999
Q ss_pred Cc
Q 000923 704 GH 705 (1222)
Q Consensus 704 Gh 705 (1222)
|.
T Consensus 189 G~ 190 (190)
T cd01855 189 GI 190 (190)
T ss_pred CC
Confidence 94
No 375
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.59 E-value=7.9e-05 Score=82.31 Aligned_cols=84 Identities=20% Similarity=0.198 Sum_probs=53.5
Q ss_pred CEEEEEccCCCCchhhhhhhcCC--ccccccc-CceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhh-
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGT--NVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF- 708 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~--~v~~~e~-~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F- 708 (1222)
.+|+|+|++++|||||+|.|++. .+..+.. ...|..|..+..++.. .....++||||||..+.
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-------------~~~~~v~~lDteG~~~~~ 74 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-------------GKEHAVLLLDTEGTDGRE 74 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-------------CCcceEEEEecCCcCccc
Confidence 36899999999999999999988 5554432 2344444444433321 01245999999995432
Q ss_pred -----HHHHHhhccc--CceeEEEeccc
Q 000923 709 -----TNLRSRGSGL--CDIAILVVDIM 729 (1222)
Q Consensus 709 -----~~~~~rg~~~--aD~aILVVDa~ 729 (1222)
..+...++.. +|++|+.++.+
T Consensus 75 ~~~~~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 75 RGEFEDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred cCchhhhhHHHHHHHHHhCEEEEeccCc
Confidence 2223333434 89888888765
No 376
>PRK00098 GTPase RsgA; Reviewed
Probab=97.56 E-value=0.00023 Score=82.13 Aligned_cols=84 Identities=25% Similarity=0.314 Sum_probs=55.7
Q ss_pred cccCceeEEEecccCCC-ChhH-HHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHH
Q 000923 716 SGLCDIAILVVDIMHGL-EPQT-IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 793 (1222)
Q Consensus 716 ~~~aD~aILVVDa~dGv-~~qT-~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i 793 (1222)
+..+|++|||+|+.+.. .... ..++..+...++|+|||+||+|+... .. .+...
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~------~~------------------~~~~~ 133 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD------LE------------------EAREL 133 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC------HH------------------HHHHH
Confidence 57899999999997642 2222 34455567789999999999999621 00 01111
Q ss_pred HHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 794 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 794 ~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
...+...| ++++++||++|.|+.+|+..|.
T Consensus 134 ~~~~~~~g---------------~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 134 LALYRAIG---------------YDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred HHHHHHCC---------------CeEEEEeCCCCccHHHHHhhcc
Confidence 11121111 4899999999999999887664
No 377
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.56 E-value=8.3e-05 Score=85.25 Aligned_cols=56 Identities=29% Similarity=0.512 Sum_probs=43.1
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 705 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh 705 (1222)
+...|+|+|.+|+|||||+|+|++... ..+...|+|.++..+.+ . ..+.||||||.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~--~-----------------~~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL--G-----------------KGLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe--C-----------------CcEEEEECCCc
Confidence 346799999999999999999998764 55667888877643221 1 34899999996
No 378
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.54 E-value=0.00099 Score=80.84 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=20.6
Q ss_pred CCEEEEEccCCCCchhhhhhhcCC
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGT 655 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~ 655 (1222)
...|.|+|..++||||||.+|.+.
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~ 48 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGI 48 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhcc
Confidence 345999999999999999998653
No 379
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.54 E-value=0.00016 Score=84.03 Aligned_cols=66 Identities=27% Similarity=0.201 Sum_probs=50.1
Q ss_pred CCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCC--------ChhHHHHHHHHH---h----cCCceEEEEeeecc
Q 000923 695 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL--------EPQTIESLNLLK---M----RNTEFIVALNKVDR 759 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv--------~~qT~e~l~~lk---~----~~vP~IVviNKiDl 759 (1222)
..+.+||++|+..+...+..++..++++|+|||.++-- .....+++.++. . .++|+||++||+|+
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence 45889999999999999999999999999999997621 122233333322 2 37899999999996
Q ss_pred c
Q 000923 760 L 760 (1222)
Q Consensus 760 ~ 760 (1222)
.
T Consensus 241 f 241 (317)
T cd00066 241 F 241 (317)
T ss_pred H
Confidence 4
No 380
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.53 E-value=0.00044 Score=80.15 Aligned_cols=126 Identities=25% Similarity=0.250 Sum_probs=69.4
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc------ccccccCceeEee-eeeEeeccccccc-----hhhcccc---------cc
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI-GATYFPAENIRER-----TRELKAN---------AT 691 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~------v~~~e~~GIT~~i-ga~~~~~~~~~~~-----~~~~~~~---------~~ 691 (1222)
|+.+|-|.-|+||||||++|+... +...+.|-|.++- .........+.+. |.++... ..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 678999999999999999998543 2334444444441 1111000011111 1110000 00
Q ss_pred cccCCeEeecCCCchhhHHHHH--------hhcccCceeEEEecccCCCChhH---HHHHHHHHhcCCceEEEEeeeccc
Q 000923 692 LKVPGLLVIDTPGHESFTNLRS--------RGSGLCDIAILVVDIMHGLEPQT---IESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 692 ~~~~~i~~IDTPGhe~F~~~~~--------rg~~~aD~aILVVDa~dGv~~qT---~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
-..+...||-|-|...-..... +..-..|.+|-|||+.+...... .....++... =+|++||+|++
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEecccCC
Confidence 1125689999999554322222 22233577999999987554332 2233333333 48999999998
Q ss_pred c
Q 000923 761 Y 761 (1222)
Q Consensus 761 ~ 761 (1222)
.
T Consensus 159 ~ 159 (323)
T COG0523 159 D 159 (323)
T ss_pred C
Confidence 4
No 381
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00022 Score=84.60 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.7
Q ss_pred CCCEEEEEccCCCCchhhhhhhcC
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRG 654 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~ 654 (1222)
++.+|+|+|++|+||||++..|..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998864
No 382
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.51 E-value=0.00013 Score=83.24 Aligned_cols=56 Identities=29% Similarity=0.476 Sum_probs=41.6
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCc-ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 705 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~-v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh 705 (1222)
+...|+|+|.+|+|||||+|+|++.. ...+...|+|.+.....+. ..+.||||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-------------------~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-------------------DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-------------------CCEEEEECCCc
Confidence 34679999999999999999998765 3445667777665322211 24899999996
No 383
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=97.50 E-value=0.00033 Score=64.92 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=58.0
Q ss_pred ccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCC-ceeeeeeeccCCCCCcceeeeeeeeehhhhc-cccCcEE
Q 000923 855 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKI 932 (1222)
Q Consensus 855 ~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g-~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~g~~i 932 (1222)
+.+.|+.+.++++.|.++.++|++|+|++||.|.++.... ..+..|..+..+. ..++. +.+|.++
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~-------------~~~v~~~~aGdI~ 67 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQ-------------YQEIPSLSAGNIG 67 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCC-------------ceECCeeCCCCEE
Confidence 3578999999999999999999999999999997765431 2233444333222 11223 3378999
Q ss_pred eecCcccccCCCceE
Q 000923 933 TAQGLEHAIAGTGLY 947 (1222)
Q Consensus 933 ~~~gL~~~~aG~~l~ 947 (1222)
++.|++.+.+|+++.
T Consensus 68 ~i~gl~~~~~Gdtl~ 82 (83)
T cd04092 68 VITGLKQTRTGDTLV 82 (83)
T ss_pred EEECCCCcccCCEEe
Confidence 999999999999874
No 384
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.46 E-value=0.00044 Score=74.36 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=71.8
Q ss_pred CEEEEEccCCCCchhhhhhhcCCccc-ccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 711 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~-~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~ 711 (1222)
..|.+||..|+|||+|=..+....++ .....|-|+++--.++.+-+ +--+++||+.|++.|...
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG---------------nl~LnlwDcGgqe~fmen 69 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG---------------NLVLNLWDCGGQEEFMEN 69 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh---------------hheeehhccCCcHHHHHH
Confidence 35999999999999987766533222 12223444444322222111 123899999999988655
Q ss_pred HH-----hhcccCceeEEEecccCCCChhHHH----HHHHHHhc--CCceEEEEeeecccc
Q 000923 712 RS-----RGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKMR--NTEFIVALNKVDRLY 761 (1222)
Q Consensus 712 ~~-----rg~~~aD~aILVVDa~dGv~~qT~e----~l~~lk~~--~vP~IVviNKiDl~~ 761 (1222)
.. ..++..+++|+|+|+...-....+. .|..+.+. ...+++.+.|+|++.
T Consensus 70 ~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 70 YLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred HHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 43 4577789999999997643333333 34444433 345889999999973
No 385
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.46 E-value=0.00016 Score=84.71 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=63.1
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcc-cccccCce--eEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh--
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGI--TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-- 707 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GI--T~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~-- 707 (1222)
..++|+|.+++|||||+++|++... .....+.. ...+|...++.......+ .+..........+.|+|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~-~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLA-IYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHH-HHhCCcCcCCceEEEEeccccccch
Confidence 4599999999999999999998876 54444443 455555555433211111 11111111223589999999432
Q ss_pred -----hHHHHHhhcccCceeEEEecccC
Q 000923 708 -----FTNLRSRGSGLCDIAILVVDIMH 730 (1222)
Q Consensus 708 -----F~~~~~rg~~~aD~aILVVDa~d 730 (1222)
+.+.....++.||++++||++.+
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 45566777899999999999853
No 386
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.45 E-value=0.00016 Score=76.42 Aligned_cols=56 Identities=32% Similarity=0.611 Sum_probs=39.9
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 705 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh 705 (1222)
+.+.|+++|.+++|||||+++|++..+ ......|+|.+...+.+. ..+.||||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-------------------~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-------------------PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-------------------CCEEEEECCCC
Confidence 345799999999999999999997664 333445566554333221 24899999995
No 387
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.44 E-value=0.00034 Score=73.84 Aligned_cols=64 Identities=22% Similarity=0.174 Sum_probs=39.5
Q ss_pred cCCeEeecCCCchhh----HHHHHhh--cccCceeEEEecccCCCChhHHHH-HHHHHhcCCceEEEEeeeccc
Q 000923 694 VPGLLVIDTPGHESF----TNLRSRG--SGLCDIAILVVDIMHGLEPQTIES-LNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F----~~~~~rg--~~~aD~aILVVDa~dGv~~qT~e~-l~~lk~~~vP~IVviNKiDl~ 760 (1222)
...+.||||||...+ ....... +...|.++|||++..+. .+.+. +.++...+ ..-+++||+|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCC-CCEEEEECCcCC
Confidence 345899999997533 2221111 23489999999986442 23333 33334445 366788999986
No 388
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=97.43 E-value=0.00047 Score=63.83 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=57.3
Q ss_pred cceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCC-ceeeeeeeccCCCCCcceeeeeeeeehhhhc-cccCcEEe
Q 000923 856 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKIT 933 (1222)
Q Consensus 856 ~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g-~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~g~~i~ 933 (1222)
.+.|+.+.+++..|.++.++|++|+|++||.|.+++... ..+..|..+. +... .++. +.+|.+++
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~---g~~~----------~~v~~~~aGdI~~ 68 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMH---GKKQ----------EEVEEAGAGDIGA 68 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEc---CCCc----------eECCEeCCCCEEE
Confidence 568999999999999999999999999999998776432 2233444332 1111 1122 34789999
Q ss_pred ecCcccccCCCceE
Q 000923 934 AQGLEHAIAGTGLY 947 (1222)
Q Consensus 934 ~~gL~~~~aG~~l~ 947 (1222)
+.|++.+.+|+++.
T Consensus 69 i~g~~~~~~Gdtl~ 82 (83)
T cd04088 69 VAGLKDTATGDTLC 82 (83)
T ss_pred EECCCCCccCCEee
Confidence 99999999999873
No 389
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.00061 Score=80.89 Aligned_cols=66 Identities=18% Similarity=0.024 Sum_probs=37.7
Q ss_pred ccCCeEeecCCCchhhHH----HHHhhccc--Cc-eeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 693 KVPGLLVIDTPGHESFTN----LRSRGSGL--CD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 693 ~~~~i~~IDTPGhe~F~~----~~~rg~~~--aD-~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
....+.||||||...... .....+.. ++ -++||+|++.+.... .+.+......+ +-=+++||+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCC-CCEEEEEeccCC
Confidence 345799999999543221 12222222 23 589999998873322 23333333222 345679999975
No 390
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.0006 Score=81.52 Aligned_cols=125 Identities=16% Similarity=0.191 Sum_probs=61.5
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccc-c-ccCc-eeEee---eeeEeeccccccchhhccc------------cccc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-G-EAGG-ITQQI---GATYFPAENIRERTRELKA------------NATL 692 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~-~-e~~G-IT~~i---ga~~~~~~~~~~~~~~~~~------------~~~~ 692 (1222)
...+|+|+|+.|+|||||+..|.+..+.. + ...+ |+.+. |+... -.......+++. ...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQ--L~~~a~ilGvp~~~v~~~~dl~~al~~l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQ--LRIYGKLLGVSVRSIKDIADLQLMLHEL 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHH--HHHHHHHcCCceecCCCHHHHHHHHHHh
Confidence 34579999999999999999886532111 1 1111 11111 11000 000000001110 0123
Q ss_pred ccCCeEeecCCCchhhHH----HHH--hhcccCceeEEEecccCCCChhHHH-HHHHHHhcCCceEEEEeeeccc
Q 000923 693 KVPGLLVIDTPGHESFTN----LRS--RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 693 ~~~~i~~IDTPGhe~F~~----~~~--rg~~~aD~aILVVDa~dGv~~qT~e-~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
....+.||||+|...... ... .......-.+||++++.+ .++.. .+......+ +-=+++||+|-.
T Consensus 268 ~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~-~~~~I~TKlDEt 339 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHG-IHGCIITKVDEA 339 (420)
T ss_pred cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCC-CCEEEEEeeeCC
Confidence 345799999999543211 111 112234458899998753 33332 233333333 235678999975
No 391
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=97.40 E-value=0.00055 Score=63.92 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=56.0
Q ss_pred ceEEEEEE---EcCceeEEEEEEEeeeecCCCEEEEccCC-CceeeeeeeccCCCCCcceeeeeeeeehhhhc-cccCcE
Q 000923 857 CTVLEVKV---IEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIK 931 (1222)
Q Consensus 857 ~~VlEv~~---~~g~G~v~~~~V~~GtLk~GD~ivv~g~~-g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~g~~ 931 (1222)
+.|+.+.. +++.|.+++++|++|+|+.||.|.+.... ...+.+|..+.... . .++. +.+|.+
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~---~----------~~v~~a~aGdI 67 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQD---R----------ETVDEAYPGDI 67 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCC---e----------eEcCEECCCCE
Confidence 46788888 88999999999999999999999766533 12333444333222 1 1222 337999
Q ss_pred EeecCcccccCCCceE
Q 000923 932 ITAQGLEHAIAGTGLY 947 (1222)
Q Consensus 932 i~~~gL~~~~aG~~l~ 947 (1222)
+++.||+...+|++|.
T Consensus 68 v~v~gl~~~~~Gdtl~ 83 (85)
T cd03689 68 IGLVNPGNFQIGDTLT 83 (85)
T ss_pred EEEECCCCccccCEee
Confidence 9999999999999874
No 392
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.37 E-value=0.00017 Score=84.02 Aligned_cols=56 Identities=27% Similarity=0.459 Sum_probs=43.1
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 705 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh 705 (1222)
+...|+|+|.+|+|||||||+|++... ..+..+|+|.++--.... .++.|+||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-------------------~~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-------------------DGIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-------------------CCeEEecCCCc
Confidence 445699999999999999999998764 567777888765433222 34999999994
No 393
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.36 E-value=0.00032 Score=72.45 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=37.2
Q ss_pred cCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeec
Q 000923 694 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 758 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiD 758 (1222)
...+.||||||..... ...+..+|.+|+|+...- ...+..+.. -.+..--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~---~D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGA---GDDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCc---hhHHHHhhh-hHhhhcCEEEEeCCC
Confidence 3569999999964332 347888999999987661 122222211 223344589999998
No 394
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.35 E-value=9.8e-05 Score=87.32 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=62.5
Q ss_pred EEEEEccCCCCchhhhhhhcCCc------ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchh
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 707 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~ 707 (1222)
.|.|+|.+|+|||||+|+|++.. +.....+|+|.++..+.+ ..++.|+||||...
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-------------------~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-------------------DDGHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-------------------CCCCEEEECCCCCC
Confidence 59999999999999999998643 233445566655432221 13478999999643
Q ss_pred hHHHHH----------hhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 708 FTNLRS----------RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 708 F~~~~~----------rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
...+.. .-.......+++++....+...-+..+..+...+..+++++++-+.+
T Consensus 217 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 217 SHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNI 279 (360)
T ss_pred hhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCcee
Confidence 322111 00112344666666554332222222333333456678888877765
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.35 E-value=0.00058 Score=78.35 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=57.1
Q ss_pred hcccCceeEEEecccCCC-ChhHHH-HHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHH
Q 000923 715 GSGLCDIAILVVDIMHGL-EPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 792 (1222)
Q Consensus 715 g~~~aD~aILVVDa~dGv-~~qT~e-~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~ 792 (1222)
.+..+|++|||+|+.+.. .....+ ++..+...++|+|+|+||+|+... .. .. .
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~------~~------------------~~-~ 129 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD------EE------------------EE-L 129 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh------HH------------------HH-H
Confidence 477899999999998876 444433 455566779999999999999631 00 00 0
Q ss_pred HHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHH
Q 000923 793 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 838 (1222)
Q Consensus 793 i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~ 838 (1222)
....+.. ..++++++||.+|.|+.+|+..|.
T Consensus 130 ~~~~~~~---------------~g~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 130 ELVEALA---------------LGYPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred HHHHHHh---------------CCCeEEEEECCCCccHHHHHhhhc
Confidence 0000111 125899999999999988877664
No 396
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.33 E-value=0.00064 Score=80.44 Aligned_cols=102 Identities=24% Similarity=0.258 Sum_probs=64.5
Q ss_pred chhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 705 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 705 he~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
.++|..++......++++|+|||+.+-......+..+.+ .+.|+|+|+||+|+...+ .. ...+ .
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~-----~~-~~~~-------~- 113 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKS-----VN-LSKI-------K- 113 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCC-----CC-HHHH-------H-
Confidence 568888888888899999999999774432222222222 268999999999997311 00 0000 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 785 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 785 ~~~~~l~~i~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
..+...+...|+. ...++++||++|.|+.+|+..|..+
T Consensus 114 ------~~l~~~~k~~g~~------------~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 114 ------EWMKKRAKELGLK------------PVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ------HHHHHHHHHcCCC------------cCcEEEecCCCCCCHHHHHHHHHHH
Confidence 0111122333331 1258899999999999999888643
No 397
>PRK01889 GTPase RsgA; Reviewed
Probab=97.31 E-value=0.0007 Score=80.00 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=58.6
Q ss_pred cccCceeEEEecccCCCChhHH-HHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000923 716 SGLCDIAILVVDIMHGLEPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 794 (1222)
Q Consensus 716 ~~~aD~aILVVDa~dGv~~qT~-e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~ 794 (1222)
+..+|.+++|+++...+.+..+ .+|..+...++|.|||+||+||+.. . ....
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~------~---------------------~~~~ 162 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED------A---------------------EEKI 162 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC------H---------------------HHHH
Confidence 4778999999999877887554 4556677889999999999999731 0 0011
Q ss_pred HHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHH
Q 000923 795 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 837 (1222)
Q Consensus 795 ~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i 837 (1222)
..+.... ..+++|++|+.+|.|+..|..+|
T Consensus 163 ~~~~~~~-------------~g~~Vi~vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 163 AEVEALA-------------PGVPVLAVSALDGEGLDVLAAWL 192 (356)
T ss_pred HHHHHhC-------------CCCcEEEEECCCCccHHHHHHHh
Confidence 1111111 23589999999999998887776
No 398
>PRK10867 signal recognition particle protein; Provisional
Probab=97.31 E-value=0.00067 Score=81.61 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=35.8
Q ss_pred cCCeEeecCCCchhh----HHHHH--hhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEeeeccc
Q 000923 694 VPGLLVIDTPGHESF----TNLRS--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 760 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F----~~~~~--rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNKiDl~ 760 (1222)
...+.||||||...+ ..... ..+..++.++||+|++.| .........+.. .++ .-|++||+|-.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCc
Confidence 356999999994322 11111 112246778999998753 222333333322 232 35678999953
No 399
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.30 E-value=0.00076 Score=81.88 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.4
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCC
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGT 655 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~ 655 (1222)
+..+|+|+|+.|+||||++..|...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHH
Confidence 3457999999999999999998743
No 400
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.30 E-value=0.00065 Score=76.91 Aligned_cols=64 Identities=19% Similarity=0.104 Sum_probs=36.6
Q ss_pred CCeEeecCCCchhh----HHHHHh--hcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 695 PGLLVIDTPGHESF----TNLRSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F----~~~~~r--g~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
..+.||||||+..+ ...... .....+.++||++++.+. .+..+.++.....+ +-=+++||+|-.
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~-~~~~I~TKlDet 224 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDET 224 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCC-CCEEEEEeecCC
Confidence 46999999996532 111111 123467789999987432 12223333333332 345678999975
No 401
>PRK12288 GTPase RsgA; Reviewed
Probab=97.29 E-value=0.00019 Score=84.14 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.7
Q ss_pred EEEEEccCCCCchhhhhhhcCCc
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTN 656 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~ 656 (1222)
+++|+|.+|+|||||||+|++..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 48999999999999999998654
No 402
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.28 E-value=0.0011 Score=61.53 Aligned_cols=69 Identities=17% Similarity=0.396 Sum_probs=50.9
Q ss_pred cccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cC--c
Q 000923 854 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QG--I 930 (1222)
Q Consensus 854 ~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g--~ 930 (1222)
||++.|.++|.+. .|+++.|+|.+|+|++||.|.+++++ .. ..|+++++++..+..| +| +
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~--~~--------------~~V~si~~~~~~~~~a~aGd~v 63 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK--ES--------------VEVKSIYVDDEEVDYAVAGENV 63 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC--cE--------------EEEEEEEECCeECCEECCCCEE
Confidence 4788999999988 99999999999999999999988754 22 3455555566555544 44 5
Q ss_pred EEeecCccc
Q 000923 931 KITAQGLEH 939 (1222)
Q Consensus 931 ~i~~~gL~~ 939 (1222)
.+.+.+++.
T Consensus 64 ~~~l~~~~~ 72 (83)
T cd03698 64 RLKLKGIDE 72 (83)
T ss_pred EEEECCCCH
Confidence 555666654
No 403
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.28 E-value=0.00086 Score=80.91 Aligned_cols=65 Identities=12% Similarity=-0.030 Sum_probs=36.8
Q ss_pred cCCeEeecCCCchhhH----HHHHhhcc---cCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 694 VPGLLVIDTPGHESFT----NLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~----~~~~rg~~---~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
...+.||||||+..+. ......+. ...-++||++++.+. ....+.+..+...++ --|++||+|-.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 4569999999964431 11222222 334678888886532 122333444443332 35789999975
No 404
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.27 E-value=0.001 Score=62.28 Aligned_cols=82 Identities=20% Similarity=0.405 Sum_probs=57.7
Q ss_pred ccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cC--cE
Q 000923 855 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QG--IK 931 (1222)
Q Consensus 855 ~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g--~~ 931 (1222)
|++.|.++|.+.+.|+++.|+|.+|++++||.|.+++..... ...|++++.|+..+..| +| +.
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~--------------~~~V~si~~~~~~~~~a~~G~~v~ 66 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETL--------------KTTVTGIEMFRKTLDEAEAGDNVG 66 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCc--------------eEEEEEEEECCcCCCEECCCCEEE
Confidence 467889999999999999999999999999999887642112 23455666666666655 33 66
Q ss_pred EeecCcccccCCCceEEeC
Q 000923 932 ITAQGLEHAIAGTGLYVVG 950 (1222)
Q Consensus 932 i~~~gL~~~~aG~~l~v~~ 950 (1222)
+.+.+++......+.+++.
T Consensus 67 l~l~~~~~~~v~rG~vl~~ 85 (87)
T cd03697 67 VLLRGVKREDVERGMVLAK 85 (87)
T ss_pred EEECCCCHHHcCCccEEec
Confidence 6677775544444555543
No 405
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.26 E-value=0.0013 Score=88.82 Aligned_cols=116 Identities=24% Similarity=0.286 Sum_probs=65.4
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCccccccc--CceeEeeeee-EeeccccccchhhcccccccccCCeEeecCCCch-
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGAT-YFPAENIRERTRELKANATLKVPGLLVIDTPGHE- 706 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~--~GIT~~iga~-~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe- 706 (1222)
.-|-.+|||++|+||||||... +-.+.-... ..-+..++.+ +|.| |-....+||||+|..
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w---------------wf~~~avliDtaG~y~ 173 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW---------------WFTDEAVLIDTAGRYT 173 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce---------------EecCCEEEEcCCCccc
Confidence 3355999999999999999876 222221110 0000111100 0111 222457899999921
Q ss_pred --------------hhHHHH--HhhcccCceeEEEecccCCCC--hhH--------HHHHHHHH---hcCCceEEEEeee
Q 000923 707 --------------SFTNLR--SRGSGLCDIAILVVDIMHGLE--PQT--------IESLNLLK---MRNTEFIVALNKV 757 (1222)
Q Consensus 707 --------------~F~~~~--~rg~~~aD~aILVVDa~dGv~--~qT--------~e~l~~lk---~~~vP~IVviNKi 757 (1222)
.|..+. .|--...|++||+||+.+=+. ++. +..|..+. ...+|+.|++|||
T Consensus 174 ~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~ 253 (1169)
T TIGR03348 174 TQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKA 253 (1169)
T ss_pred cCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 133322 233456899999999976432 111 11122222 2368999999999
Q ss_pred ccccC
Q 000923 758 DRLYG 762 (1222)
Q Consensus 758 Dl~~~ 762 (1222)
|++.+
T Consensus 254 Dll~G 258 (1169)
T TIGR03348 254 DLLAG 258 (1169)
T ss_pred hhhcC
Confidence 99865
No 406
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.26 E-value=0.00092 Score=63.23 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=62.0
Q ss_pred cccc-CCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhccccc
Q 000923 1101 CVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1178 (1222)
Q Consensus 1101 ~vf~-~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f 1178 (1222)
.+|+ ...+.|+..+|..|.|+.|..+++ +.+ ....|.||+.+.+.+.+|..|+.|+|.|.+.+. ..+
T Consensus 11 ~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~---~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~--------~~v 79 (91)
T cd03693 11 DVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG---VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSK--------KDI 79 (91)
T ss_pred EEEEeCCceEEEEEEEecceeecCCEEEECCCC---cEEEEEEEEECCcCcCEECCCCEEEEEECCCCH--------HHc
Confidence 3665 345677777999999999999988 555 479999999999999999999999999987642 257
Q ss_pred ccCCeEEEc
Q 000923 1179 DIEDELVSH 1187 (1222)
Q Consensus 1179 ~~~d~l~s~ 1187 (1222)
..||+|.+.
T Consensus 80 ~~G~vl~~~ 88 (91)
T cd03693 80 KRGDVAGDS 88 (91)
T ss_pred CCcCEEccC
Confidence 788877653
No 407
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.25 E-value=0.00046 Score=82.93 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=36.5
Q ss_pred CCeEeecCCCchhh----HHHH--HhhcccCceeEEEecccCCCChhHHHHHHHHH-hcCCceEEEEeeeccc
Q 000923 695 PGLLVIDTPGHESF----TNLR--SRGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDRL 760 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F----~~~~--~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk-~~~vP~IVviNKiDl~ 760 (1222)
..+.||||||...+ .... ......+|.++||+|++.| .........+. ..++ .=|++||+|-.
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-~giIlTKlD~~ 252 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-TGVVLTKLDGD 252 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-CEEEEeCccCc
Confidence 46999999994322 1111 1123347889999999754 23333333333 2232 35679999953
No 408
>PRK12289 GTPase RsgA; Reviewed
Probab=97.23 E-value=0.00025 Score=83.32 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEEccCCCCchhhhhhhcCCc
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTN 656 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~ 656 (1222)
+++|+|++|+|||||||+|++..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998653
No 409
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.23 E-value=0.0013 Score=61.56 Aligned_cols=80 Identities=18% Similarity=0.351 Sum_probs=55.4
Q ss_pred ccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCC-Cc-eeeeeeeccCCCCCcceeeeeeeeehhhhccc-cC--
Q 000923 855 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GP-IVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QG-- 929 (1222)
Q Consensus 855 ~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~-g~-~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g-- 929 (1222)
|+++|.++|.+.+.|++++|+|.+|+|++||.+.+++.. +. .. .+|+++++++..+..| +|
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~--------------~~V~sI~~~~~~~~~a~aGd~ 66 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRP--------------VTVKSIHRNRSPVRVVRAGQS 66 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeE--------------EEEEEEEECCeECCEECCCCE
Confidence 457899999999999999999999999999999987753 21 23 3455556666655544 33
Q ss_pred cEEeecCcccccCCCceEE
Q 000923 930 IKITAQGLEHAIAGTGLYV 948 (1222)
Q Consensus 930 ~~i~~~gL~~~~aG~~l~v 948 (1222)
+.+.+.+++......++++
T Consensus 67 v~l~l~~i~~~~i~~G~vl 85 (87)
T cd03694 67 ASLALKKIDRSLLRKGMVL 85 (87)
T ss_pred EEEEEcCCCHHHcCCccEE
Confidence 5566667654333344443
No 410
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.22 E-value=0.00015 Score=85.93 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=47.7
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc-ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc--hhhH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH--ESFT 709 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~-v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh--e~F~ 709 (1222)
.+|++||.+|+||||+||+|.+.. |....++|-|.|+-.+++. +.+.|.||||. ..|.
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-------------------~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-------------------PSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-------------------CCceecCCCCccccCCC
Confidence 579999999999999999999865 5667788888888766654 45999999994 4454
Q ss_pred H
Q 000923 710 N 710 (1222)
Q Consensus 710 ~ 710 (1222)
.
T Consensus 376 ~ 376 (562)
T KOG1424|consen 376 P 376 (562)
T ss_pred c
Confidence 3
No 411
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.21 E-value=0.00038 Score=78.77 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=66.0
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccc-cchhhcccccccccCCeEeecCCCch---
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR-ERTRELKANATLKVPGLLVIDTPGHE--- 706 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~-~~~~~~~~~~~~~~~~i~~IDTPGhe--- 706 (1222)
.++.++|+|.+++|||||+++|+......+..+..|++.....+.....+ ..+..+.....-....|+|+|++|..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 34579999999999999999999888777777777776654444333222 11111110000011249999998832
Q ss_pred ----hhHHHHHhhcccCceeEEEecccC
Q 000923 707 ----SFTNLRSRGSGLCDIAILVVDIMH 730 (1222)
Q Consensus 707 ----~F~~~~~rg~~~aD~aILVVDa~d 730 (1222)
-..+-....++.+|.++-||++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 245556677889999999998864
No 412
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=97.20 E-value=0.0012 Score=60.95 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=54.1
Q ss_pred ccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCC-ceeeeeeeccCCCCCcceeeeeeeeehhhhc-cccCcEE
Q 000923 855 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKI 932 (1222)
Q Consensus 855 ~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g-~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~g~~i 932 (1222)
|.+.|+.+.+++. |.++.++|++|+|++||.|.++.... ..+..|..+.... . .++. +.+|.++
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~---~----------~~~~~~~aGdI~ 66 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNE---M----------EEVEEAGAGDIC 66 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCC---c----------eEccEECCCCEE
Confidence 4578999988876 99999999999999999998776432 2233444332111 1 1122 2368888
Q ss_pred eecCcccccCCCce
Q 000923 933 TAQGLEHAIAGTGL 946 (1222)
Q Consensus 933 ~~~gL~~~~aG~~l 946 (1222)
++.|++ ..+|++|
T Consensus 67 ~i~g~~-~~~Gdtl 79 (81)
T cd04091 67 AIFGID-CASGDTF 79 (81)
T ss_pred EEECCC-cccCCEe
Confidence 899997 8899887
No 413
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0015 Score=82.93 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.3
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCc
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTN 656 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~ 656 (1222)
..+|+|||+.|+||||++..|....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3479999999999999999987543
No 414
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0016 Score=70.29 Aligned_cols=114 Identities=23% Similarity=0.218 Sum_probs=70.7
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH-
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 711 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~- 711 (1222)
|.|.+||+.-+||||+.........+.. |.-+-.+.-. +...-++ ....+.+||.||+.+|..-
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne-----TlflESTski-------~~d~is~---sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE-----TLFLESTSKI-------TRDHISN---SFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc-----eeEeeccCcc-------cHhhhhh---hhcceEEeecCCccccCCCc
Confidence 5599999999999999877654322111 1111111000 0000000 1134899999998876322
Q ss_pred --HHhhcccCceeEEEecccCCC-ChhHHHHHHHHHhc----CCceEEEEeeecccc
Q 000923 712 --RSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMR----NTEFIVALNKVDRLY 761 (1222)
Q Consensus 712 --~~rg~~~aD~aILVVDa~dGv-~~qT~e~l~~lk~~----~vP~IVviNKiDl~~ 761 (1222)
..+..+.+.+.|+|||+.+.. .+-++-++-.++.+ ++.+=|++.|+|-+.
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 334567788999999997654 35566666666766 456889999999763
No 415
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=97.14 E-value=0.0017 Score=60.69 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=54.6
Q ss_pred ccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCC-CceeeeeeeccCCCCCcceeeeeeeeehhhhc-cccCcEE
Q 000923 855 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKI 932 (1222)
Q Consensus 855 ~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~-g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~g~~i 932 (1222)
|++.|+.+.++++.|.++.++|++|+|+.||.|.++... ...+..|. ++.+.. .++. +.+|.++
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~-~~~~~~-------------~~~~~~~aGdI~ 66 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVG-IFRPEM-------------TPTDELSAGQVG 66 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEE-EECCCc-------------cCCceECCCCEE
Confidence 467899999999999999999999999999999877643 22344554 322221 1122 2367777
Q ss_pred eec-C---cccccCCCce
Q 000923 933 TAQ-G---LEHAIAGTGL 946 (1222)
Q Consensus 933 ~~~-g---L~~~~aG~~l 946 (1222)
++. | |..+.+|+++
T Consensus 67 ~v~~g~~~l~~~~~Gdtl 84 (86)
T cd03699 67 YIIAGIKTVKDARVGDTI 84 (86)
T ss_pred EEEccccccCccccccEe
Confidence 664 3 6667889887
No 416
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.14 E-value=0.002 Score=75.61 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=21.6
Q ss_pred CCCEEEEEccCCCCchhhhhhhcC
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRG 654 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~ 654 (1222)
+-|+.+|.|..|+||||||++|+.
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~ 26 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQ 26 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHh
Confidence 457899999999999999999974
No 417
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.10 E-value=0.00047 Score=78.12 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=23.0
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCC
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGT 655 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~ 655 (1222)
.+...+.+++|+.|+|||||+|+|...
T Consensus 161 ~l~~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 161 LLAGKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred HhcCCeEEEECCCCCcHHHHHHhhCch
Confidence 345567999999999999999999863
No 418
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.08 E-value=0.00053 Score=74.44 Aligned_cols=62 Identities=27% Similarity=0.274 Sum_probs=46.1
Q ss_pred CCeEeecC-CCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcC-CceEEEEeeecc
Q 000923 695 PGLLVIDT-PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDR 759 (1222)
Q Consensus 695 ~~i~~IDT-PGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~-vP~IVviNKiDl 759 (1222)
..+.++|| +|.+-|. .+....+|++|+|||.+..--......-.+....+ .++.+++||+|-
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 56999999 8988885 33456799999999987533333334445556678 789999999995
No 419
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.07 E-value=0.00095 Score=70.95 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=39.5
Q ss_pred CeEeecCCCchh------hHHHHHhhcccCc---eeEEEecccCCCC-----hhHHHHHHHHHhcCCceEEEEeeecccc
Q 000923 696 GLLVIDTPGHES------FTNLRSRGSGLCD---IAILVVDIMHGLE-----PQTIESLNLLKMRNTEFIVALNKVDRLY 761 (1222)
Q Consensus 696 ~i~~IDTPGhe~------F~~~~~rg~~~aD---~aILVVDa~dGv~-----~qT~e~l~~lk~~~vP~IVviNKiDl~~ 761 (1222)
.+.++||||+.. -.....+.+..-+ ++++++++.--+. .-...++...-...+|.|=+++|||++.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 589999999433 2333334444333 2667776532111 1222334444556899999999999984
No 420
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.06 E-value=0.00073 Score=69.99 Aligned_cols=55 Identities=18% Similarity=0.391 Sum_probs=36.5
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 705 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh 705 (1222)
...|+++|.+++|||||+++|++... ..+...|.|.++..... ...+.||||||.
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-------------------TSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-------------------CCCEEEEECcCC
Confidence 34589999999999999999986543 22334444443221111 124899999994
No 421
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.94 E-value=0.0032 Score=56.47 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=57.9
Q ss_pred CCCeEEEEEEEeeeeecCCCeeecCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccccccCCeEE
Q 000923 1106 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELV 1185 (1222)
Q Consensus 1106 ~~~~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~~~d~l~ 1185 (1222)
..+.|+.|+|.+|.|++|..+.+......+.++|.+|.+....+.++..|+.|+|.+...+ .+..||.|.
T Consensus 13 ~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~----------~~~~g~~l~ 82 (83)
T cd01342 13 GRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD----------DIKIGDTLT 82 (83)
T ss_pred CceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc----------ccCCCCEec
Confidence 4678999999999999999998854233567899999999999999999999999986432 577777763
No 422
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=96.93 E-value=0.0031 Score=59.95 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=53.0
Q ss_pred cceEEEEEEEcCc-eeEEEEEEEeeeecCCCEEEEccCCCc-------eeeeeeeccCCCCCcceeeeeeeeehhhhcc-
Q 000923 856 QCTVLEVKVIEGH-GTTIDVVLVNGVLHEGDQIVVCGLQGP-------IVTTIRALLTPHPMKELRVKGTYLHHKQIKA- 926 (1222)
Q Consensus 856 ~~~VlEv~~~~g~-G~v~~~~V~~GtLk~GD~ivv~g~~g~-------~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~a- 926 (1222)
.+.|+.+...+.. |....++|++|+|+.||.|.+++.... ...+|..|+...... ..++..
T Consensus 2 ~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~----------~~~v~~a 71 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRY----------KIEVNEA 71 (94)
T ss_pred EEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCC----------EEEccee
Confidence 4678888888877 678999999999999999988753210 112222222111110 112333
Q ss_pred ccCcEEeecCcccccCCCceE
Q 000923 927 AQGIKITAQGLEHAIAGTGLY 947 (1222)
Q Consensus 927 a~g~~i~~~gL~~~~aG~~l~ 947 (1222)
.+|.++++.||+...++.+++
T Consensus 72 ~aGdIv~v~gl~~~~~~~~t~ 92 (94)
T cd04090 72 PAGNWVLIKGIDSSIVKTATI 92 (94)
T ss_pred CCCCEEEEECcchheeceEEe
Confidence 378999999998887776654
No 423
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.89 E-value=0.00077 Score=75.54 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=21.8
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCC
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGT 655 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~ 655 (1222)
...+++|+|++|+|||||+|+|++.
T Consensus 119 ~~~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 119 QNRISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhhh
Confidence 3357999999999999999999864
No 424
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=96.87 E-value=0.0047 Score=57.22 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=47.5
Q ss_pred cccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cC--c
Q 000923 854 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QG--I 930 (1222)
Q Consensus 854 ~~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g--~ 930 (1222)
||++.|.++|.. .|+++.|+|.+|+|++||.+.+++++ ... .|+++++++..+..+ +| +
T Consensus 1 plr~~I~~v~~~--~g~vv~G~v~~G~i~~G~~v~i~P~~--~~~--------------~V~si~~~~~~~~~a~aGd~v 62 (82)
T cd04089 1 PLRLPIIDKYKD--MGTVVLGKVESGTIKKGDKLLVMPNK--TQV--------------EVLSIYNEDVEVRYARPGENV 62 (82)
T ss_pred CeEEEEEeEEEc--CCEEEEEEEeeeEEecCCEEEEeCCC--cEE--------------EEEEEEECCEECCEECCCCEE
Confidence 467888888865 38999999999999999999988754 223 344555555555544 33 5
Q ss_pred EEeecCccc
Q 000923 931 KITAQGLEH 939 (1222)
Q Consensus 931 ~i~~~gL~~ 939 (1222)
.+.+.+++.
T Consensus 63 ~l~l~~i~~ 71 (82)
T cd04089 63 RLRLKGIEE 71 (82)
T ss_pred EEEecCCCH
Confidence 566666554
No 425
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.85 E-value=0.00033 Score=74.57 Aligned_cols=64 Identities=23% Similarity=0.184 Sum_probs=35.8
Q ss_pred cCCeEeecCCCchhhHHH-----HHhhcccCceeEEEecccCCCChhH--HHHHHHHHhcCCceEEEEeeeccc
Q 000923 694 VPGLLVIDTPGHESFTNL-----RSRGSGLCDIAILVVDIMHGLEPQT--IESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~-----~~rg~~~aD~aILVVDa~dGv~~qT--~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
.+.+.||-|.|......+ .....-..+.+|.|||+..-..... ..+..++. .-=+|++||+|++
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~---~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA---FADVIVLNKIDLV 154 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC---T-SEEEEE-GGGH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch---hcCEEEEeccccC
Confidence 357899999995544333 1122234578999999954211111 11223333 3348999999997
No 426
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.85 E-value=0.0091 Score=70.74 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=44.7
Q ss_pred CCeEeecCCCch-------------hhHHHHHhhcccCceeEEEecccCC-CCh---hHHHHHHHHHhcCCceEEEEeee
Q 000923 695 PGLLVIDTPGHE-------------SFTNLRSRGSGLCDIAILVVDIMHG-LEP---QTIESLNLLKMRNTEFIVALNKV 757 (1222)
Q Consensus 695 ~~i~~IDTPGhe-------------~F~~~~~rg~~~aD~aILVVDa~dG-v~~---qT~e~l~~lk~~~vP~IVviNKi 757 (1222)
+.+.++|.||.. ....|...++..++.+||+|- +| +.. ..-.....+.-.+...|+|++|+
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 458999999953 245566778889999999984 32 211 12223445555688899999999
Q ss_pred ccc
Q 000923 758 DRL 760 (1222)
Q Consensus 758 Dl~ 760 (1222)
|+.
T Consensus 490 DlA 492 (980)
T KOG0447|consen 490 DLA 492 (980)
T ss_pred chh
Confidence 996
No 427
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=96.84 E-value=0.0053 Score=56.93 Aligned_cols=68 Identities=22% Similarity=0.451 Sum_probs=49.3
Q ss_pred ccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cC--cE
Q 000923 855 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QG--IK 931 (1222)
Q Consensus 855 ~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g--~~ 931 (1222)
|++.|.++|.+.+.|+++.|+|.+|++++|+.+.+.++. ..+. |++++.++..+..+ +| +.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~~~--------------V~sI~~~~~~~~~a~aGd~v~ 64 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EETR--------------VRSIQVHGKDVEEAKAGDRVA 64 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ceEE--------------EEEEEECCcCcCEEcCCCEEE
Confidence 467899999999999999999999999999999987643 2333 44555555555544 33 55
Q ss_pred EeecCcc
Q 000923 932 ITAQGLE 938 (1222)
Q Consensus 932 i~~~gL~ 938 (1222)
+.+.++.
T Consensus 65 i~l~~~~ 71 (83)
T cd03696 65 LNLTGVD 71 (83)
T ss_pred EEEcCCC
Confidence 5666653
No 428
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.79 E-value=0.0012 Score=75.91 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=21.6
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN 656 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~ 656 (1222)
.+++|+|++|+|||||++.|++..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 569999999999999999998754
No 429
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=96.79 E-value=0.0037 Score=58.63 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=60.0
Q ss_pred ccc-CCCCeEEEEEEEeeeeecCCCeee-cCC-eEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhccccc
Q 000923 1102 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQR-DFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1178 (1222)
Q Consensus 1102 vf~-~~~~~IaG~~V~~G~l~~g~~i~v-~~~-~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f 1178 (1222)
+|+ +..+.|+.-+|..|.|++|..+.+ +.+ .--+..+|.||+.+...+.++..|+.|+|.|.+.+. .++
T Consensus 8 vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~--------~~i 79 (87)
T cd03694 8 IYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDR--------SLL 79 (87)
T ss_pred EEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCH--------HHc
Confidence 554 345678888999999999999988 442 123578999999999999999999999999987643 246
Q ss_pred ccCCeEE
Q 000923 1179 DIEDELV 1185 (1222)
Q Consensus 1179 ~~~d~l~ 1185 (1222)
..|++|.
T Consensus 80 ~~G~vl~ 86 (87)
T cd03694 80 RKGMVLV 86 (87)
T ss_pred CCccEEe
Confidence 6677764
No 430
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.77 E-value=0.004 Score=73.14 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=63.3
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCcccc---cccCceeEe---eeeeEeeccccc--cchhhcccc------------cc
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNVQE---GEAGGITQQ---IGATYFPAENIR--ERTRELKAN------------AT 691 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~v~~---~e~~GIT~~---iga~~~~~~~~~--~~~~~~~~~------------~~ 691 (1222)
..+|++||++|+||||.|-.|...-+.. ...+-||.+ ||+.. ... ....+++.. ..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~E----QLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVE----QLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHH----HHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 4579999999999999998885433211 111223332 12210 000 001111110 12
Q ss_pred cccCCeEeecCCCchhhHHH----HHhhccc--CceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 692 LKVPGLLVIDTPGHESFTNL----RSRGSGL--CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 692 ~~~~~i~~IDTPGhe~F~~~----~~rg~~~--aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
+....+.||||.|+..+..+ +...+.. ..-+.||++++.. ...-.+.+..++..++- =+++||+|-.
T Consensus 279 l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET 351 (407)
T COG1419 279 LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDET 351 (407)
T ss_pred hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEccccc
Confidence 33457999999996544222 2222222 3346778887642 12223444555544443 3458999976
No 431
>PRK13796 GTPase YqeH; Provisional
Probab=96.76 E-value=0.0011 Score=78.58 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=36.5
Q ss_pred EEEEEccCCCCchhhhhhhcCCc------ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCch
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 706 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe 706 (1222)
.|.|+|.+|+|||||+|+|+... +..+..+|+|.++-.+.+ . .+..|+||||..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~-----------------~~~~l~DTPGi~ 221 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--D-----------------DGSFLYDTPGII 221 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--C-----------------CCcEEEECCCcc
Confidence 59999999999999999998532 223444555554322211 1 236899999964
No 432
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=96.73 E-value=0.0034 Score=56.62 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=48.7
Q ss_pred eeEEEEEEEeeeecCCCEEEEccCCC---ceeeeeeeccCCCCCcceeeeeeeeehhhhc-cccCcEEeecCccc-ccCC
Q 000923 869 GTTIDVVLVNGVLHEGDQIVVCGLQG---PIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-AIAG 943 (1222)
Q Consensus 869 G~v~~~~V~~GtLk~GD~ivv~g~~g---~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa~g~~i~~~gL~~-~~aG 943 (1222)
|++++++|++|+|++||.|++++... ....+|+.|+.++.... ..+. +.+|+.+.+.+++. ...|
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~----------~~~~~~~~G~~~~~~~~~~~i~~G 70 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQ----------EAVAGANAGDIVAIIGLNDAIRRG 70 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEES----------EEETTEEEEEEEESSSGCSCSSTT
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCcc----------EeCCceeeEEEEEEcCCCCCcCcC
Confidence 78999999999999999999966322 34467777765542111 1122 33688899999999 6899
Q ss_pred CceE
Q 000923 944 TGLY 947 (1222)
Q Consensus 944 ~~l~ 947 (1222)
++|.
T Consensus 71 dtl~ 74 (74)
T PF03144_consen 71 DTLT 74 (74)
T ss_dssp EEEE
T ss_pred CEEC
Confidence 8763
No 433
>PRK00098 GTPase RsgA; Reviewed
Probab=96.71 E-value=0.0013 Score=75.80 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.7
Q ss_pred CCEEEEEccCCCCchhhhhhhcCCc
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTN 656 (1222)
Q Consensus 632 ~~~V~IvG~vdsGKTTLl~~L~~~~ 656 (1222)
..+++|+|++|+|||||+++|++..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3469999999999999999998653
No 434
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=96.70 E-value=0.0053 Score=56.97 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=58.6
Q ss_pred ccccCCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccccc
Q 000923 1101 CVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1179 (1222)
Q Consensus 1101 ~vf~~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~ 1179 (1222)
.+|+.+.+.|+.-+|..|.|++|..+.+ +.+ ...+|.||+.++.++++|..|+.|+|.|.+.+. ..+.
T Consensus 8 ~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~---~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~--------~~v~ 76 (83)
T cd03698 8 DKYKDQGGTVVSGKVESGSIQKGDTLLVMPSK---ESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDE--------EDIS 76 (83)
T ss_pred eEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCC---cEEEEEEEEECCeECCEECCCCEEEEEECCCCH--------HHCC
Confidence 3554225667777999999999999988 555 357999999999999999999999999987642 2466
Q ss_pred cCCeEE
Q 000923 1180 IEDELV 1185 (1222)
Q Consensus 1180 ~~d~l~ 1185 (1222)
.||+|.
T Consensus 77 ~G~vl~ 82 (83)
T cd03698 77 PGDVLC 82 (83)
T ss_pred CCCEEe
Confidence 677764
No 435
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.0096 Score=78.65 Aligned_cols=115 Identities=23% Similarity=0.241 Sum_probs=65.5
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCcee--EeeeeeEeeccccccchhhcccccccccCCeEeecCCC----c-
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----H- 705 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT--~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPG----h- 705 (1222)
|=.+|||++|+||||++...- -++......+-. ...|..+|. .|-...-.+|||.| |
T Consensus 126 PWy~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cd---------------wwf~deaVlIDtaGry~~q~ 189 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCD---------------WWFTDEAVLIDTAGRYITQD 189 (1188)
T ss_pred CceEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccC---------------cccccceEEEcCCcceeccc
Confidence 338999999999999986542 222211111110 011111111 12234588999999 3
Q ss_pred -hh---------hHHH--HHhhcccCceeEEEecccCCCC--hhHH-HHHHHHHh----------cCCceEEEEeeeccc
Q 000923 706 -ES---------FTNL--RSRGSGLCDIAILVVDIMHGLE--PQTI-ESLNLLKM----------RNTEFIVALNKVDRL 760 (1222)
Q Consensus 706 -e~---------F~~~--~~rg~~~aD~aILVVDa~dGv~--~qT~-e~l~~lk~----------~~vP~IVviNKiDl~ 760 (1222)
.+ |..+ ..|.....|+|||.+++.+-.+ ++.+ .+...++. ...|+.|++||+|++
T Consensus 190 s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 190 SADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred CcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 11 2222 3355667899999999976433 3332 22222222 367999999999999
Q ss_pred cCc
Q 000923 761 YGW 763 (1222)
Q Consensus 761 ~~w 763 (1222)
++|
T Consensus 270 ~GF 272 (1188)
T COG3523 270 PGF 272 (1188)
T ss_pred ccH
Confidence 753
No 436
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=96.66 E-value=0.006 Score=56.52 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=58.0
Q ss_pred ccccCCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccccc
Q 000923 1101 CVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1179 (1222)
Q Consensus 1101 ~vf~~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~ 1179 (1222)
.+|+.. +.|+.-+|..|.|++|..+.+ +.+ ....|.||+.+...+.+|..|+-|+|.|.+.+. .++.
T Consensus 8 ~v~~~~-g~vv~G~v~~G~i~~G~~v~i~P~~---~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~--------~~v~ 75 (82)
T cd04089 8 DKYKDM-GTVVLGKVESGTIKKGDKLLVMPNK---TQVEVLSIYNEDVEVRYARPGENVRLRLKGIEE--------EDIS 75 (82)
T ss_pred eEEEcC-CEEEEEEEeeeEEecCCEEEEeCCC---cEEEEEEEEECCEECCEECCCCEEEEEecCCCH--------HHCC
Confidence 355433 566777999999999999987 555 257899999999999999999999999987643 2466
Q ss_pred cCCeEE
Q 000923 1180 IEDELV 1185 (1222)
Q Consensus 1180 ~~d~l~ 1185 (1222)
.||+|.
T Consensus 76 ~G~vl~ 81 (82)
T cd04089 76 PGFVLC 81 (82)
T ss_pred CCCEEe
Confidence 777764
No 437
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=96.65 E-value=0.0088 Score=55.33 Aligned_cols=61 Identities=20% Similarity=0.168 Sum_probs=45.8
Q ss_pred ccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeeccCCCCCcceeeeeeeeehhhhccc-cCcE
Q 000923 855 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QGIK 931 (1222)
Q Consensus 855 ~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa-~g~~ 931 (1222)
|++.|.++|...+.|+.++|+|.+|+|++||.+.+++.+ . ...|+++++|+.++..| +|..
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~--~--------------~~~V~si~~~~~~~~~a~aGd~ 62 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG--K--------------TSRVKSIETFDGELDEAGAGES 62 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC--C--------------eEEEEEEEECCcEeCEEcCCCE
Confidence 467899999888888889999999999999999987643 2 23455666666666655 4433
No 438
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.65 E-value=0.0022 Score=72.34 Aligned_cols=57 Identities=25% Similarity=0.481 Sum_probs=41.9
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc------ccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 705 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~------v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh 705 (1222)
+.|.|+|.||+|||||+|+++... ...|...|+|+.++..+--. ..+.+.+|||||.
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~----------------~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS----------------HRPPVYLIDTPGI 206 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec----------------cCCceEEecCCCc
Confidence 569999999999999999997432 44567788888776532211 1245999999993
No 439
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.63 E-value=0.0027 Score=73.87 Aligned_cols=127 Identities=23% Similarity=0.197 Sum_probs=65.6
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCc------ccccccCceeEe---------------eeeeEeeccc-cccchhhccc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQ---------------IGATYFPAEN-IRERTRELKA 688 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~------v~~~e~~GIT~~---------------iga~~~~~~~-~~~~~~~~~~ 688 (1222)
+-|+.+|.|.-|+||||||++|+... +...+.|.+..+ -|...+.... .......+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 55889999999999999999998431 112222222111 0111111100 0000000000
Q ss_pred ccc--cccCCeEeecCCCchhhHHHHHhh--------cccCceeEEEecccCCCChh--HHHHHHHHHhcCCceEEEEee
Q 000923 689 NAT--LKVPGLLVIDTPGHESFTNLRSRG--------SGLCDIAILVVDIMHGLEPQ--TIESLNLLKMRNTEFIVALNK 756 (1222)
Q Consensus 689 ~~~--~~~~~i~~IDTPGhe~F~~~~~rg--------~~~aD~aILVVDa~dGv~~q--T~e~l~~lk~~~vP~IVviNK 756 (1222)
... -..+...||-|.|..+-..+.... .-..+.+|.|||+.+..... ......++.. -=+|++||
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~IvlnK 159 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADRILLTK 159 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCEEEEec
Confidence 000 002568999999976554433221 11257899999997643211 1112233333 34889999
Q ss_pred eccc
Q 000923 757 VDRL 760 (1222)
Q Consensus 757 iDl~ 760 (1222)
+|++
T Consensus 160 ~Dl~ 163 (318)
T PRK11537 160 TDVA 163 (318)
T ss_pred cccC
Confidence 9997
No 440
>PRK13796 GTPase YqeH; Provisional
Probab=96.59 E-value=0.0077 Score=71.53 Aligned_cols=99 Identities=28% Similarity=0.367 Sum_probs=57.8
Q ss_pred hhhHHHHHhhcccCc-eeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHH
Q 000923 706 ESFTNLRSRGSGLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 784 (1222)
Q Consensus 706 e~F~~~~~rg~~~aD-~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~ 784 (1222)
.+|..+. ..+...| ++++|||+.+-... ....|..+. .+.|+|+|+||+|+... ... . +
T Consensus 57 ~~~~~~l-~~i~~~~~lIv~VVD~~D~~~s-~~~~L~~~~-~~kpviLViNK~DLl~~-----~~~-~-----------~ 116 (365)
T PRK13796 57 DDFLKLL-NGIGDSDALVVNVVDIFDFNGS-WIPGLHRFV-GNNPVLLVGNKADLLPK-----SVK-K-----------N 116 (365)
T ss_pred HHHHHHH-HhhcccCcEEEEEEECccCCCc-hhHHHHHHh-CCCCEEEEEEchhhCCC-----ccC-H-----------H
Confidence 3566644 4445455 89999999874322 222232222 26899999999999731 000 0 0
Q ss_pred HHHHHHHHH-HHHHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 785 EFNMRLVQI-VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 785 ~~~~~l~~i-~~~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.+... ...+...|+. ...++++||++|.|+.+|+..|..+
T Consensus 117 ----~i~~~l~~~~k~~g~~------------~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 117 ----KVKNWLRQEAKELGLR------------PVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ----HHHHHHHHHHHhcCCC------------cCcEEEEECCCCCCHHHHHHHHHHh
Confidence 01111 1112222321 1268999999999999999888654
No 441
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.52 E-value=0.0064 Score=62.02 Aligned_cols=63 Identities=17% Similarity=0.054 Sum_probs=43.8
Q ss_pred CCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhc--CCceEEEEeeecc
Q 000923 695 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDR 759 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~--~vP~IVviNKiDl 759 (1222)
..+.|||||++.... ....+..+|.+|+|++.+..-...+...+..+... ..++.+++|+++.
T Consensus 45 yd~VIiD~p~~~~~~--~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGISDN--VLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCCHH--HHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 459999998754333 34578889999999998653334445555555433 3578899999975
No 442
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.0066 Score=66.93 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=28.2
Q ss_pred ccCCCCEEEEEccCCCCchhhhhhhcCCcccccc
Q 000923 628 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE 661 (1222)
Q Consensus 628 ~~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e 661 (1222)
.+--+++|..+|.+|.|||||++.|.++++....
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p 71 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEP 71 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCC
Confidence 3445567999999999999999999998876554
No 443
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.44 E-value=0.0055 Score=64.48 Aligned_cols=63 Identities=19% Similarity=0.091 Sum_probs=45.9
Q ss_pred CeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCc-eEEEEeeeccc
Q 000923 696 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 760 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP-~IVviNKiDl~ 760 (1222)
.+.|||||+..... ....+..+|.+|+|++....-...+...+..+...+.+ +.+++|+++..
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 69999998754433 34457889999999988765555566666777666654 67899999864
No 444
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.0019 Score=74.73 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=19.2
Q ss_pred CCeEeecCCC-chhhHHHHH--hhcccCceeEEEecccCCCC
Q 000923 695 PGLLVIDTPG-HESFTNLRS--RGSGLCDIAILVVDIMHGLE 733 (1222)
Q Consensus 695 ~~i~~IDTPG-he~F~~~~~--rg~~~aD~aILVVDa~dGv~ 733 (1222)
+.++++|-|- |-+.....| .++...--.+|+|+-+.|+-
T Consensus 431 PTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFL 472 (807)
T KOG0066|consen 431 PTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFL 472 (807)
T ss_pred ceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchH
Confidence 3466666663 444332222 23333344567777666654
No 445
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.34 E-value=0.005 Score=60.28 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=19.9
Q ss_pred EEEEEccCCCCchhhhhhhcCCc
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTN 656 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~ 656 (1222)
.|+++|+.++|||+|+.++....
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~ 24 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFP 24 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCC
Confidence 58999999999999999995443
No 446
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.32 E-value=0.011 Score=68.94 Aligned_cols=69 Identities=25% Similarity=0.198 Sum_probs=51.0
Q ss_pred cccCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCC--------CChhHHHHHHHHH---h----cCCceEEEEee
Q 000923 692 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG--------LEPQTIESLNLLK---M----RNTEFIVALNK 756 (1222)
Q Consensus 692 ~~~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dG--------v~~qT~e~l~~lk---~----~~vP~IVviNK 756 (1222)
++...+-++|.+||..-..-|......++++|+||+.++= ....-.+++.+.. . .++++|+++||
T Consensus 192 ~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK 271 (354)
T KOG0082|consen 192 IKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNK 271 (354)
T ss_pred eCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeec
Confidence 4455689999999998888888889999999999988641 1122233443333 2 26899999999
Q ss_pred eccc
Q 000923 757 VDRL 760 (1222)
Q Consensus 757 iDl~ 760 (1222)
+|+.
T Consensus 272 ~DLF 275 (354)
T KOG0082|consen 272 KDLF 275 (354)
T ss_pred HHHH
Confidence 9984
No 447
>PRK13695 putative NTPase; Provisional
Probab=96.31 E-value=0.0093 Score=63.08 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=37.2
Q ss_pred cCCCchhhHHH-HHhhcccCceeEEEec---ccCCCChhHHHHHHHHHhcCCceEEEEeeec
Q 000923 701 DTPGHESFTNL-RSRGSGLCDIAILVVD---IMHGLEPQTIESLNLLKMRNTEFIVALNKVD 758 (1222)
Q Consensus 701 DTPGhe~F~~~-~~rg~~~aD~aILVVD---a~dGv~~qT~e~l~~lk~~~vP~IVviNKiD 758 (1222)
|.-|.+.+... ....+..+++ ||+| ..+...++..+.+..+...+.|+|+++|+..
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 33344444333 2333445665 7888 5666677778888888788999999999843
No 448
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.26 E-value=0.0055 Score=70.17 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.4
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcC
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRG 654 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~ 654 (1222)
..++.+|.|+|-.|+||||.+..|..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHH
Confidence 35678899999999999999998863
No 449
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.21 E-value=0.011 Score=62.84 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=33.6
Q ss_pred ceeEEEecccCCCChhHHHHHHH--HHhcCCceEEEEeeeccc
Q 000923 720 DIAILVVDIMHGLEPQTIESLNL--LKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 720 D~aILVVDa~dGv~~qT~e~l~~--lk~~~vP~IVviNKiDl~ 760 (1222)
|++|+|||+...+.......+.+ +...+.|+|+|+||+|++
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999998777666566665 555679999999999997
No 450
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=96.19 E-value=0.0078 Score=56.41 Aligned_cols=77 Identities=21% Similarity=0.241 Sum_probs=57.9
Q ss_pred cccc-CCCCeEEEEEEEeeeeecCCCeeec-CCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhccccc
Q 000923 1101 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1178 (1222)
Q Consensus 1101 ~vf~-~~~~~IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f 1178 (1222)
.+|+ ...+.|+-.+|..|.|+.|..+.+. -+. -....|.||+.+.+.+.+|..|+.|+|.|.+.+. ..+
T Consensus 7 ~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~-~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~--------~~v 77 (87)
T cd03697 7 DVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGE-TLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKR--------EDV 77 (87)
T ss_pred EEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCC-CceEEEEEEEECCcCCCEECCCCEEEEEECCCCH--------HHc
Confidence 3554 3345666669999999999999873 221 2368899999999999999999999999987542 245
Q ss_pred ccCCeEEE
Q 000923 1179 DIEDELVS 1186 (1222)
Q Consensus 1179 ~~~d~l~s 1186 (1222)
..|++|..
T Consensus 78 ~rG~vl~~ 85 (87)
T cd03697 78 ERGMVLAK 85 (87)
T ss_pred CCccEEec
Confidence 66777643
No 451
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.19 E-value=0.013 Score=61.68 Aligned_cols=67 Identities=21% Similarity=0.080 Sum_probs=47.3
Q ss_pred cCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCce-EEEEeeeccc
Q 000923 694 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRL 760 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~-IVviNKiDl~ 760 (1222)
...+.|||||+...-.......+..+|.+|+|+.....-...+...+..++..++++ -+++|+++..
T Consensus 67 ~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 67 ELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 356999999875321111111136789999999887655667778888898888876 4789998853
No 452
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.18 E-value=0.02 Score=67.27 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=19.0
Q ss_pred CEEEEEccCCCCchhhhhhhc
Q 000923 633 PICCIMGHVDTGKTKLLDCIR 653 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~ 653 (1222)
.-|+|+|+|-+|||||+.+|.
T Consensus 18 IYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred eEEEeecCcccCchhHHHHHH
Confidence 348999999999999999985
No 453
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=96.16 E-value=0.019 Score=54.53 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=50.1
Q ss_pred ceEEEEEEEc-CceeEEEEEEEeeeecCCCEEEEccCCC------c-eeeeeeeccCCCCCcceeeeeeeeehhhhc-cc
Q 000923 857 CTVLEVKVIE-GHGTTIDVVLVNGVLHEGDQIVVCGLQG------P-IVTTIRALLTPHPMKELRVKGTYLHHKQIK-AA 927 (1222)
Q Consensus 857 ~~VlEv~~~~-g~G~v~~~~V~~GtLk~GD~ivv~g~~g------~-~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~-aa 927 (1222)
+.|+.+...+ +.|.+..++|++|+|+.|+.|.+.+... . .-.+|..|+.+.... ..++. +.
T Consensus 3 ~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~----------~~~v~~a~ 72 (93)
T cd03700 3 MYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRY----------REPVDEVP 72 (93)
T ss_pred EEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCC----------EEEccccC
Confidence 4677777788 8999999999999999999997665220 0 011222222111110 11223 33
Q ss_pred cCcEEeecCcccccCCCc
Q 000923 928 QGIKITAQGLEHAIAGTG 945 (1222)
Q Consensus 928 ~g~~i~~~gL~~~~aG~~ 945 (1222)
+|.++.+.|++.+.+|++
T Consensus 73 aGdIv~i~g~~~~~~g~~ 90 (93)
T cd03700 73 AGNIVLIVGLDQLKSGTT 90 (93)
T ss_pred CCCEEEEECCccCceEeE
Confidence 688999999887777764
No 454
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.14 E-value=0.03 Score=50.03 Aligned_cols=49 Identities=27% Similarity=0.376 Sum_probs=38.3
Q ss_pred ccceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCceeeeeeec
Q 000923 855 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 903 (1222)
Q Consensus 855 ~~~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~~~~~Ir~l 903 (1222)
+.+.|..++.+++.|.++.++|++|+|++|+.+.+++........|+.+
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i 49 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSL 49 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEe
Confidence 3568899999999999999999999999999998876432333444444
No 455
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.14 E-value=0.13 Score=57.90 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=24.6
Q ss_pred ccccCCCCEEEEEccCCCCchhhhhhhcC
Q 000923 626 AEENLRSPICCIMGHVDTGKTKLLDCIRG 654 (1222)
Q Consensus 626 ~~~~~R~~~V~IvG~vdsGKTTLl~~L~~ 654 (1222)
.....|-|+-.|.|.-|+|||||+++++.
T Consensus 51 ~~~~~rIPvtIITGyLGaGKtTLLn~Il~ 79 (391)
T KOG2743|consen 51 SSLGARIPVTIITGYLGAGKTTLLNYILT 79 (391)
T ss_pred cCCCCccceEEEEecccCChHHHHHHHHc
Confidence 34456778889999999999999999984
No 456
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.14 E-value=0.0095 Score=70.10 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=51.0
Q ss_pred CCeEeecCCCchhhHHHHHhhcccCceeEEEecccCC-----------CChhHHHHHHHHHh----cCCceEEEEeeecc
Q 000923 695 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKM----RNTEFIVALNKVDR 759 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dG-----------v~~qT~e~l~~lk~----~~vP~IVviNKiDl 759 (1222)
..+.|||.+|+..+...+..++..++++|+|||.++- -...+...+..+.. .++|+||++||+|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 4589999999999999999999999999999999862 12233333433332 36899999999997
Q ss_pred c
Q 000923 760 L 760 (1222)
Q Consensus 760 ~ 760 (1222)
.
T Consensus 264 ~ 264 (342)
T smart00275 264 F 264 (342)
T ss_pred H
Confidence 5
No 457
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.09 E-value=0.016 Score=70.05 Aligned_cols=108 Identities=19% Similarity=0.303 Sum_probs=63.6
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
.|.++|..++|||.||+.|++..+..+..+.++.......+...+.. ..+.+-|.+-. ....+..
T Consensus 427 ~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~--------------k~LiL~ei~~~-~~~~l~~ 491 (625)
T KOG1707|consen 427 QCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQ--------------KYLILREIGED-DQDFLTS 491 (625)
T ss_pred eEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeecccc--------------ceEEEeecCcc-ccccccC
Confidence 47899999999999999999877665333322222221111111100 12444444432 1111111
Q ss_pred hhcccCceeEEEecccCCCChhHHHHHHHHH-----hcCCceEEEEeeeccc
Q 000923 714 RGSGLCDIAILVVDIMHGLEPQTIESLNLLK-----MRNTEFIVALNKVDRL 760 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk-----~~~vP~IVviNKiDl~ 760 (1222)
.-..||+++||+|.++. ....++..+. ...+|+++|.+|+|+.
T Consensus 492 -ke~~cDv~~~~YDsS~p---~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 492 -KEAACDVACLVYDSSNP---RSFEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred -ccceeeeEEEecccCCc---hHHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 12679999999999853 3333332221 2579999999999985
No 458
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.09 E-value=0.029 Score=63.97 Aligned_cols=85 Identities=25% Similarity=0.357 Sum_probs=55.0
Q ss_pred cCceeEEEecccCC-CChhH-HHHHHHHHhcCCceEEEEeeeccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000923 718 LCDIAILVVDIMHG-LEPQT-IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVT 795 (1222)
Q Consensus 718 ~aD~aILVVDa~dG-v~~qT-~e~l~~lk~~~vP~IVviNKiDl~~~w~~~~~a~i~~~l~~q~~~~~~~~~~~l~~i~~ 795 (1222)
..|-+||||.+.++ +...- ..+|-++...++..||++||+|++.. .+. .. .....
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~------~~~---------------~~--~~~~~ 135 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD------EEA---------------AV--KELLR 135 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc------hHH---------------HH--HHHHH
Confidence 36667788877664 33333 34556666779999999999999841 110 00 11222
Q ss_pred HHHHcCCchhhhhccccCCCceeEEEcCCCCCCChhhHHHHHHHH
Q 000923 796 QLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 840 (1222)
Q Consensus 796 ~L~e~gl~~e~~~~~~~~g~~v~vvpvSA~tGeGI~eLl~~i~~~ 840 (1222)
.+...| ++++.+|++++.|+..|...+...
T Consensus 136 ~y~~~g---------------y~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 136 EYEDIG---------------YPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred HHHhCC---------------eeEEEecCcCcccHHHHHHHhcCC
Confidence 222233 689999999999999988777654
No 459
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.096 Score=54.29 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=30.8
Q ss_pred HHHHhhcccCceeEEE-ecccCCCChhHHHHHHHHHhcCCceEEEEeeecc
Q 000923 710 NLRSRGSGLCDIAILV-VDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR 759 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILV-VDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl 759 (1222)
....+.+..+|++|+= |..|.-......+.+..+...+.|+|.++.+-++
T Consensus 92 ~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 92 PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 3344555556764431 2233334455566777777788999999988765
No 460
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.96 E-value=0.0037 Score=72.42 Aligned_cols=57 Identities=19% Similarity=0.391 Sum_probs=42.8
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCCcc-cccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCc
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 705 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~~v-~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGh 705 (1222)
.+..+|+|+|.+++||||||++|....+ ..|...|+|..+--..+ +..|.|+|+||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-------------------dk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-------------------DKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-------------------cCCceeccCCce
Confidence 3556799999999999999999986654 45667777765433322 245999999995
No 461
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=95.94 E-value=0.02 Score=51.61 Aligned_cols=70 Identities=21% Similarity=0.090 Sum_probs=57.4
Q ss_pred CeEEEEEEEeeeeecCCCeee--cC-CeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccc-cccCCe
Q 000923 1108 PIVLGVDVVEGIAKVGTPICI--PQ-RDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH-FDIEDE 1183 (1222)
Q Consensus 1108 ~~IaG~~V~~G~l~~g~~i~v--~~-~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~-f~~~d~ 1183 (1222)
+.|+.++|.+|+|++|..|.+ .+ +.-...++|.+|..++..+.++..|..||+.+...+. .+ +..||+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~--------~~~i~~Gdt 72 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGL--------NDAIRRGDT 72 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSG--------CSCSSTTEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCC--------CCCcCcCCE
Confidence 368999999999999999998 32 2223679999999999999999999999999986532 24 688888
Q ss_pred EE
Q 000923 1184 LV 1185 (1222)
Q Consensus 1184 l~ 1185 (1222)
|+
T Consensus 73 l~ 74 (74)
T PF03144_consen 73 LT 74 (74)
T ss_dssp EE
T ss_pred EC
Confidence 74
No 462
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.93 E-value=0.025 Score=59.94 Aligned_cols=65 Identities=20% Similarity=0.107 Sum_probs=50.6
Q ss_pred cCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCCceEEEEeeeccc
Q 000923 694 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
.+.+.|||||+.... .....+..+|.+|+|+.....-...+...+..++..++|+.+++|++|..
T Consensus 92 ~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 92 GAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred CCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 467999999865332 33455788999999999876555566777888888899999999999964
No 463
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.89 E-value=0.019 Score=55.79 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=41.3
Q ss_pred CeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHHhcCC----ceEEEEee
Q 000923 696 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT----EFIVALNK 756 (1222)
Q Consensus 696 ~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~~v----P~IVviNK 756 (1222)
.+.|||||+..... ....+..||.+|+|++....-...+...+..++..+. .+.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 49999998865443 3446788999999998876545555666666666543 46678875
No 464
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.88 E-value=0.011 Score=69.84 Aligned_cols=124 Identities=22% Similarity=0.270 Sum_probs=66.8
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCcccc-----------ccc------CceeEeeeeeEeeccccccchhhcc-c---c
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-----------GEA------GGITQQIGATYFPAENIRERTRELK-A---N 689 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~~-----------~e~------~GIT~~iga~~~~~~~~~~~~~~~~-~---~ 689 (1222)
++.+|.++|--|+||||.+..|...-... ++. .....++++.+|+....... ..+. . .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~P-v~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDP-VEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCH-HHHHHHHHHH
Confidence 44578999999999999888774211100 111 11223445555544211100 0010 0 1
Q ss_pred cccccCCeEeecCCCc--hh---hHHHH-HhhcccCceeEEEecccCCCChhHHHHHHHHHhc--CCce-EEEEeeeccc
Q 000923 690 ATLKVPGLLVIDTPGH--ES---FTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEF-IVALNKVDRL 760 (1222)
Q Consensus 690 ~~~~~~~i~~IDTPGh--e~---F~~~~-~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk~~--~vP~-IVviNKiDl~ 760 (1222)
+....+.+.||||.|- .+ +..+. ......+|-+|||||++-|-. ..+.++.+ .+++ =|++||+|-.
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd-----A~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD-----AVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH-----HHHHHHHHhhhcCCceEEEEcccCC
Confidence 1112346999999992 22 12221 234556888999999998743 33344433 2332 4679999953
No 465
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.84 E-value=0.0071 Score=61.95 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.1
Q ss_pred CEEEEEccCCCCchhhhhhhcCC
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGT 655 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~ 655 (1222)
|+|+|+|+.|+|||||+..|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999754
No 466
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=95.73 E-value=0.03 Score=51.83 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=51.9
Q ss_pred EEEEEEEeeeeecCCCeeec-CCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccccccCCeEE
Q 000923 1110 VLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELV 1185 (1222)
Q Consensus 1110 IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~~~d~l~ 1185 (1222)
++.-+|..|.|++|..+.+. .+ ....|.||+.+..++.++..|+-|||.|.+. .++..||+|-
T Consensus 17 ~v~Gkv~~G~v~~Gd~v~~~P~~---~~~~V~si~~~~~~~~~a~aGd~v~l~l~~~----------~~i~~G~vl~ 80 (81)
T cd03695 17 GYAGTIASGSIRVGDEVVVLPSG---KTSRVKSIETFDGELDEAGAGESVTLTLEDE----------IDVSRGDVIV 80 (81)
T ss_pred EEEEEEccceEECCCEEEEcCCC---CeEEEEEEEECCcEeCEEcCCCEEEEEECCc----------cccCCCCEEe
Confidence 45559999999999999884 44 2578999999999999999999999999743 2567778774
No 467
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.68 E-value=0.0065 Score=69.85 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.4
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCCccc
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQ 658 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~~v~ 658 (1222)
..+-|+|||.+|+||||+||.|+...|.
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVC 333 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVC 333 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccc
Confidence 4456999999999999999999987764
No 468
>PLN00043 elongation factor 1-alpha; Provisional
Probab=95.57 E-value=0.13 Score=62.85 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=60.7
Q ss_pred cccc-CCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhccccc
Q 000923 1101 CVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1178 (1222)
Q Consensus 1101 ~vf~-~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f 1178 (1222)
.+|+ ...+.|+..+|..|.|++|..|.+ +.+. ..+|.||+.+..+|.+|..|+-|||.|.+.+. ..+
T Consensus 240 ~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~---~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~--------~~i 308 (447)
T PLN00043 240 DVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGL---TTEVKSVEMHHESLQEALPGDNVGFNVKNVAV--------KDL 308 (447)
T ss_pred EEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCC---EEEEEEEEECCeEeCEecCCCeEEEEECCCCH--------hhC
Confidence 4676 456788899999999999999988 5553 57999999999999999999999999987642 145
Q ss_pred ccCCeEEE
Q 000923 1179 DIEDELVS 1186 (1222)
Q Consensus 1179 ~~~d~l~s 1186 (1222)
..|++|..
T Consensus 309 ~rG~vl~~ 316 (447)
T PLN00043 309 KRGYVASN 316 (447)
T ss_pred CCccEEcc
Confidence 56666644
No 469
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.024 Score=65.54 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.3
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhc
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIR 653 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~ 653 (1222)
..++-+|.++|-.|+||||.+-.|.
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA 122 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLA 122 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHH
Confidence 3466789999999999999988775
No 470
>PRK12736 elongation factor Tu; Reviewed
Probab=95.55 E-value=0.058 Score=64.87 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=60.4
Q ss_pred ccc-CCCCeEEEEEEEeeeeecCCCeeec-CCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccccc
Q 000923 1102 VFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1179 (1222)
Q Consensus 1102 vf~-~~~~~IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f~ 1179 (1222)
+|. ...+.|+..+|..|+|+.|..|.+. .+. -...+|.||+.+...|.++..|+-|||.|.+.+. ..+.
T Consensus 218 ~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~-~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~--------~~i~ 288 (394)
T PRK12736 218 VFTITGRGTVVTGRVERGTVKVGDEVEIVGIKE-TQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDR--------DEVE 288 (394)
T ss_pred EEecCCcEEEEEEEEeecEEecCCEEEEecCCC-CeEEEEEEEEECCEEccEECCCCEEEEEECCCcH--------HhCC
Confidence 665 4568899999999999999999874 221 2357999999999999999999999999987642 2466
Q ss_pred cCCeEEE
Q 000923 1180 IEDELVS 1186 (1222)
Q Consensus 1180 ~~d~l~s 1186 (1222)
.||+|..
T Consensus 289 ~G~vl~~ 295 (394)
T PRK12736 289 RGQVLAK 295 (394)
T ss_pred cceEEec
Confidence 6777744
No 471
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.51 E-value=0.012 Score=63.91 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=39.6
Q ss_pred CCeEeecCCCchhh------HHHHHhhcccCceeEEEecccCC---CChhH-HH----HHHHHHhcCCceEEEEeeeccc
Q 000923 695 PGLLVIDTPGHESF------TNLRSRGSGLCDIAILVVDIMHG---LEPQT-IE----SLNLLKMRNTEFIVALNKVDRL 760 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F------~~~~~rg~~~aD~aILVVDa~dG---v~~qT-~e----~l~~lk~~~vP~IVviNKiDl~ 760 (1222)
..+.++|+||+..+ .....+.+...|+-+.+|...+. ..|.. +. ++.-+.....|.|=|+.|+|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 35999999995442 23334445556665555554432 22222 22 2233344578999999999986
Q ss_pred c
Q 000923 761 Y 761 (1222)
Q Consensus 761 ~ 761 (1222)
.
T Consensus 177 ~ 177 (290)
T KOG1533|consen 177 K 177 (290)
T ss_pred H
Confidence 4
No 472
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.37 E-value=0.0098 Score=59.22 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=57.1
Q ss_pred CEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeec---CCCchhhH
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVID---TPGHESFT 709 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~ID---TPGhe~F~ 709 (1222)
..+.|.|.+|+|||+++.++............ +....++...... ....+.... ....-.. ......+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~i----~~~l~~~~~~~~~~~~l~ 76 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKN---HPDVIYVNCPSSR-TPRDFAQEI----LEALGLPLKSRQTSDELR 76 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC---CEEEEEEEHHHHS-SHHHHHHHH----HHHHT-SSSSTS-HHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccC---CCcEEEEEeCCCC-CHHHHHHHH----HHHhCccccccCCHHHHH
Confidence 35899999999999999999754322110000 1112222211111 000000000 0000011 11233344
Q ss_pred HHHHhhcccCceeEEEecccCCC-ChhHHHHHHHHH-hcCCceEEEEee
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-MRNTEFIVALNK 756 (1222)
Q Consensus 710 ~~~~rg~~~aD~aILVVDa~dGv-~~qT~e~l~~lk-~~~vP~IVviNK 756 (1222)
......+......+||||-.+.+ ...+.+.|..+. ..++++|++.+-
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 55555666666689999988777 666666665553 346778887754
No 473
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.36 E-value=0.03 Score=51.89 Aligned_cols=94 Identities=18% Similarity=0.103 Sum_probs=54.6
Q ss_pred EEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHH-H
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-R 712 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~-~ 712 (1222)
++++.|..|+||||+...|...-... |... ..+. .+.|+|+||......+ .
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~----g~~v----~~~~--------------------d~iivD~~~~~~~~~~~~ 52 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKR----GKRV----LLID--------------------DYVLIDTPPGLGLLVLLC 52 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC----CCeE----EEEC--------------------CEEEEeCCCCccchhhhh
Confidence 37888999999999998885322111 1100 0000 3899999986544322 2
Q ss_pred HhhcccCceeEEEecccCCCChhHHHHH----HHHHhcCCceEEEEe
Q 000923 713 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALN 755 (1222)
Q Consensus 713 ~rg~~~aD~aILVVDa~dGv~~qT~e~l----~~lk~~~vP~IVviN 755 (1222)
...+..+|.++++++............+ ........++.+++|
T Consensus 53 ~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 53 LLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 4456678999999988754333333321 122223455666665
No 474
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=95.34 E-value=0.14 Score=62.42 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=61.5
Q ss_pred ccccc-CCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhcccc
Q 000923 1100 NCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH 1177 (1222)
Q Consensus 1100 ~~vf~-~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~ 1177 (1222)
..+|+ ...+.|+..+|..|.|++|..|.+ +.+ ...+|.||+.++.++.+|..|+-|||.|.+.+. .+
T Consensus 239 ~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~--------~~ 307 (446)
T PTZ00141 239 QDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG---VTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSV--------KD 307 (446)
T ss_pred EEEEecCCceEEEEEEEEcceEecCCEEEEccCC---cEEEEEEEEecCcccCEECCCCEEEEEECCCCH--------HH
Confidence 34776 456789999999999999999988 555 247899999999999999999999999987542 24
Q ss_pred cccCCeEEE
Q 000923 1178 FDIEDELVS 1186 (1222)
Q Consensus 1178 f~~~d~l~s 1186 (1222)
+..||+|..
T Consensus 308 v~rG~vl~~ 316 (446)
T PTZ00141 308 IKRGYVASD 316 (446)
T ss_pred cCCceEEec
Confidence 666777755
No 475
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.33 E-value=0.026 Score=54.12 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=43.3
Q ss_pred EEEEc-cCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCCCchhhHHHHH
Q 000923 635 CCIMG-HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 713 (1222)
Q Consensus 635 V~IvG-~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTPGhe~F~~~~~ 713 (1222)
|+|+| ..|+||||+.-.|...-... |. . ...+..+.. ..+.|||||+..... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~----~~--~--vl~~d~d~~---------------~d~viiD~p~~~~~~--~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR----GK--R--VLLIDLDPQ---------------YDYIIIDTPPSLGLL--TR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC----CC--c--EEEEeCCCC---------------CCEEEEeCcCCCCHH--HH
Confidence 66777 67999999987775322111 11 0 111111100 348999998864332 33
Q ss_pred hhcccCceeEEEecccC
Q 000923 714 RGSGLCDIAILVVDIMH 730 (1222)
Q Consensus 714 rg~~~aD~aILVVDa~d 730 (1222)
..+..+|.+|++++...
T Consensus 57 ~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 57 NALAAADLVLIPVQPSP 73 (104)
T ss_pred HHHHHCCEEEEeccCCH
Confidence 66778999999998764
No 476
>PHA02518 ParA-like protein; Provisional
Probab=95.31 E-value=0.063 Score=58.16 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=38.8
Q ss_pred CCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCC---hhHHHHHHHHHhc--CCce-EEEEeeecc
Q 000923 695 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEF-IVALNKVDR 759 (1222)
Q Consensus 695 ~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~---~qT~e~l~~lk~~--~vP~-IVviNKiDl 759 (1222)
..++||||||.. ..+....+..+|.+|+++..+.--. .++...+..+... +.|. .|++|+.+.
T Consensus 77 ~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 77 YDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred CCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 469999999863 3445667889999999998764222 2333333333222 4554 456676553
No 477
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.14 E-value=0.016 Score=64.38 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=41.4
Q ss_pred cCCeEeecCCCchhhHHHHHhhcccCceeEEEecccCCCChhHHHHHHHHH------hcCCceEEEEeeec
Q 000923 694 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK------MRNTEFIVALNKVD 758 (1222)
Q Consensus 694 ~~~i~~IDTPGhe~F~~~~~rg~~~aD~aILVVDa~dGv~~qT~e~l~~lk------~~~vP~IVviNKiD 758 (1222)
...+.||||||+... +....+..+|++|+.+..+.--...+...+..+. ..++|+.|++|.++
T Consensus 83 ~yD~iiID~pp~~~~--~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSSE--LNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 357999999997653 3455678899999888765322223333332222 23678889999987
No 478
>PTZ00121 MAEBL; Provisional
Probab=95.05 E-value=0.027 Score=73.18 Aligned_cols=8 Identities=13% Similarity=0.281 Sum_probs=3.0
Q ss_pred hhHHHHHH
Q 000923 413 DDLEKILA 420 (1222)
Q Consensus 413 ~~~e~~la 420 (1222)
+++.+.++
T Consensus 1629 eeekKk~E 1636 (2084)
T PTZ00121 1629 EEEKKKVE 1636 (2084)
T ss_pred HHHHHHHH
Confidence 33333333
No 479
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.04 E-value=0.058 Score=57.20 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCCCEEEEEccCCCCchhhhhhhcCC
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGT 655 (1222)
Q Consensus 630 ~R~~~V~IvG~vdsGKTTLl~~L~~~ 655 (1222)
.++++|+|+|..|+|||||+.+|+..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 46789999999999999999999643
No 480
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.75 E-value=0.016 Score=73.27 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=79.1
Q ss_pred cCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEe-----eeeeEe---eccc---------------cc----c
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ-----IGATYF---PAEN---------------IR----E 681 (1222)
Q Consensus 629 ~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~-----iga~~~---~~~~---------------~~----~ 681 (1222)
.+..|.|+|+|...+||||.++.|++..|.....+.+|.- +..... +|.. ++ .
T Consensus 26 ~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~ 105 (657)
T KOG0446|consen 26 FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS 105 (657)
T ss_pred cccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence 3556779999999999999999999866543333333321 100000 0000 00 0
Q ss_pred chhhccc----------cc---ccccCCeEeecCCCc-------------hhhHHHHHhhcccCceeEEEecccCCCChh
Q 000923 682 RTRELKA----------NA---TLKVPGLLVIDTPGH-------------ESFTNLRSRGSGLCDIAILVVDIMHGLEPQ 735 (1222)
Q Consensus 682 ~~~~~~~----------~~---~~~~~~i~~IDTPGh-------------e~F~~~~~rg~~~aD~aILVVDa~dGv~~q 735 (1222)
.+..+.+ .. .-....+++||+||. .....|...++.....+||.|...+ ..--
T Consensus 106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d~a 184 (657)
T KOG0446|consen 106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SDIA 184 (657)
T ss_pred hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hhhh
Confidence 0000000 00 011346999999993 2356788889999999999888765 4455
Q ss_pred HHHHHHHHHhc---CCceEEEEeeeccc
Q 000923 736 TIESLNLLKMR---NTEFIVALNKVDRL 760 (1222)
Q Consensus 736 T~e~l~~lk~~---~vP~IVviNKiDl~ 760 (1222)
|-++|.+++.. +.-.|-|++|+|+.
T Consensus 185 ts~alkiarevDp~g~RTigvitK~Dlm 212 (657)
T KOG0446|consen 185 TSPALVVAREVDPGGSRTLEVITKFDFM 212 (657)
T ss_pred cCHHHHHHHhhCCCccchhHHhhhHHhh
Confidence 66677777764 45677788887764
No 481
>PLN03126 Elongation factor Tu; Provisional
Probab=94.61 E-value=0.062 Score=66.00 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=62.0
Q ss_pred cccc-CCCCeEEEEEEEeeeeecCCCeeec-CCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhccccc
Q 000923 1101 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1178 (1222)
Q Consensus 1101 ~vf~-~~~~~IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f 1178 (1222)
.+|+ ...+.|+.-+|..|.|++|..|.+. .+. -...+|.||+.++.+|.+|..|+-|||.|.+.+. ..+
T Consensus 296 ~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~-~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~--------~di 366 (478)
T PLN03126 296 DVFSITGRGTVATGRVERGTVKVGETVDIVGLRE-TRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQK--------ADI 366 (478)
T ss_pred EEEEeCCceEEEEEEEEcCeEecCCEEEEecCCC-ceEEEEEEEEECCeECCEEeCCceeeeeccCCcH--------HHc
Confidence 4676 4567888999999999999999884 332 2458899999999999999999999999987642 246
Q ss_pred ccCCeEEEc
Q 000923 1179 DIEDELVSH 1187 (1222)
Q Consensus 1179 ~~~d~l~s~ 1187 (1222)
..|++|...
T Consensus 367 ~rG~VL~~~ 375 (478)
T PLN03126 367 QRGMVLAKP 375 (478)
T ss_pred CCccEEecC
Confidence 667777553
No 482
>PRK00049 elongation factor Tu; Reviewed
Probab=94.51 E-value=0.086 Score=63.43 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=61.9
Q ss_pred cccc-CCCCeEEEEEEEeeeeecCCCeeec-CCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhccccc
Q 000923 1101 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1178 (1222)
Q Consensus 1101 ~vf~-~~~~~IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f 1178 (1222)
.+|+ ...+.|+..+|..|+|++|..|.+. -+. -...+|.||+.+..+|.++..|+-|||.|.+.+. .++
T Consensus 219 ~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~-~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~--------~~i 289 (396)
T PRK00049 219 DVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRD-TQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKR--------EDV 289 (396)
T ss_pred EEEeeCCceEEEEEEEeeeEEecCCEEEEeecCC-CceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCH--------HHC
Confidence 3676 4567899999999999999999873 211 1358999999999999999999999999987642 256
Q ss_pred ccCCeEEEc
Q 000923 1179 DIEDELVSH 1187 (1222)
Q Consensus 1179 ~~~d~l~s~ 1187 (1222)
..|++|...
T Consensus 290 ~~G~vl~~~ 298 (396)
T PRK00049 290 ERGQVLAKP 298 (396)
T ss_pred CcceEEecC
Confidence 778877664
No 483
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=94.46 E-value=0.11 Score=61.48 Aligned_cols=95 Identities=24% Similarity=0.328 Sum_probs=73.1
Q ss_pred cccchHHHHHHHHhhhhhHHHHhhccceeeceeEEeccccccc-CCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEee
Q 000923 1062 IIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRI 1139 (1222)
Q Consensus 1062 IIY~Lid~~~~~l~~~~~~~~~e~~~~av~p~~~~i~~~~vf~-~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I 1139 (1222)
...+=|++++.+|..++.......- ..|.|.-+++|. +..++|+=-.|.+|+++.|..+.+ +-|. .-+|
T Consensus 145 ~~g~GI~~Lk~~l~~L~~~~e~d~~------~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k---~v~V 215 (447)
T COG3276 145 KTGRGIEELKNELIDLLEEIERDEQ------KPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINK---EVRV 215 (447)
T ss_pred ccCCCHHHHHHHHHHhhhhhhhccC------CceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCC---eEEE
Confidence 3445568999999888752111111 234565578898 678999999999999999999987 3332 3369
Q ss_pred echhcccccccccccCceEEEEEccC
Q 000923 1140 ASIENNHKPVDTAKKGQKAAIKIAGS 1165 (1222)
Q Consensus 1140 ~Slk~~k~~V~e~~kG~EcgI~i~~~ 1165 (1222)
.||+.+..+++++.+|+.||+.|.|-
T Consensus 216 RsIq~~d~d~~~a~AG~RVgLaL~~v 241 (447)
T COG3276 216 RSIQAHDVDVEEAKAGQRVGLALKGV 241 (447)
T ss_pred EeeeecCcchhhccccceeeeecCCC
Confidence 99999999999999999999999976
No 484
>PRK01889 GTPase RsgA; Reviewed
Probab=94.45 E-value=0.027 Score=66.76 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.6
Q ss_pred CEEEEEccCCCCchhhhhhhcCC
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGT 655 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~ 655 (1222)
-+++|+|.+|+|||||++.|++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 36999999999999999999854
No 485
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.42 E-value=0.072 Score=60.89 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=62.4
Q ss_pred cccCCCCEEEEEccCCCCchhhhhhhcCCcccccccCceeEeeeeeEeeccccccchhhcccccccccCCeEeecCC---
Q 000923 627 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP--- 703 (1222)
Q Consensus 627 ~~~~R~~~V~IvG~vdsGKTTLl~~L~~~~v~~~e~~GIT~~iga~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDTP--- 703 (1222)
+...|.|.+.|+|.+|.||||++.+|+...-......+...-+-....|......+ + +. .-+..+=.|
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~---~--Y~----~IL~~lgaP~~~ 126 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR---F--YS----AILEALGAPYRP 126 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH---H--HH----HHHHHhCcccCC
Confidence 34578888999999999999999999754322111111100011111111100000 0 00 000001111
Q ss_pred --CchhhHHHHHhhcccCceeEEEecccCCC----ChhHHHHHHHHHh----cCCceEEEEee
Q 000923 704 --GHESFTNLRSRGSGLCDIAILVVDIMHGL----EPQTIESLNLLKM----RNTEFIVALNK 756 (1222)
Q Consensus 704 --Ghe~F~~~~~rg~~~aD~aILVVDa~dGv----~~qT~e~l~~lk~----~~vP~IVviNK 756 (1222)
..........+.++.+.+-+||||=.|.+ ..+-++.++.++. +.+|+|.|.+.
T Consensus 127 ~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 11222344556778889999999976542 2333445555543 57899988765
No 486
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=94.40 E-value=0.17 Score=64.11 Aligned_cols=77 Identities=23% Similarity=0.425 Sum_probs=62.2
Q ss_pred ccccc-CCCCeEEEEEEEeeeeecCCCeeec-CCeEEEEEeeechhcccccccccccCceEEEEEcc-CCchhhhhhccc
Q 000923 1100 NCVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG-SNSEEQQKMFGR 1176 (1222)
Q Consensus 1100 ~~vf~-~~~~~IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~-~n~~~~~~~~gr 1176 (1222)
..+|. +..++|+..+|.+|+|+.|..|.+. .+. ..+|.||+.++.+|.+|..|+-|||.|.| .+. .
T Consensus 180 d~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~---~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~--------~ 248 (614)
T PRK10512 180 DRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNK---PMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEK--------E 248 (614)
T ss_pred EEEeccCCCeEEEEEEEecceEecCCEEEEcCCCC---cEEEEEEecCCcCCCEEeCCCeEEEEecCCCCh--------h
Confidence 34776 4678999999999999999999884 342 46899999999999999999999999986 321 2
Q ss_pred ccccCCeEEEc
Q 000923 1177 HFDIEDELVSH 1187 (1222)
Q Consensus 1177 ~f~~~d~l~s~ 1187 (1222)
.+.-||+|...
T Consensus 249 ~i~rGdvl~~~ 259 (614)
T PRK10512 249 QINRGDWLLAD 259 (614)
T ss_pred hCCCcCEEeCC
Confidence 46778887653
No 487
>PRK12735 elongation factor Tu; Reviewed
Probab=94.32 E-value=0.11 Score=62.65 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=60.7
Q ss_pred cccc-CCCCeEEEEEEEeeeeecCCCeeec-CCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhccccc
Q 000923 1101 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1178 (1222)
Q Consensus 1101 ~vf~-~~~~~IaG~~V~~G~l~~g~~i~v~-~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f 1178 (1222)
.+|+ ...+.|+..+|..|+|++|..|.+. .+. -...+|.||+.+.++|.+|..|+-|||.|.+-+. .++
T Consensus 219 ~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~-~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~--------~~i 289 (396)
T PRK12735 219 DVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKE-TQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKR--------EDV 289 (396)
T ss_pred EEEecCCceEEEEEEEEecEEeCCCEEEEecCCC-CeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcH--------HHC
Confidence 3665 4567889999999999999999874 221 1357899999999999999999999999987532 246
Q ss_pred ccCCeEEEc
Q 000923 1179 DIEDELVSH 1187 (1222)
Q Consensus 1179 ~~~d~l~s~ 1187 (1222)
..|++|...
T Consensus 290 ~rG~vl~~~ 298 (396)
T PRK12735 290 ERGQVLAKP 298 (396)
T ss_pred CcceEEEcC
Confidence 667776543
No 488
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=94.23 E-value=0.093 Score=63.74 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=63.9
Q ss_pred ceeEEeccccccc-CCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEccCCchh
Q 000923 1092 PCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1169 (1222)
Q Consensus 1092 p~~~~i~~~~vf~-~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~ 1169 (1222)
|..+-|. .+|+ ...+.|+.-+|..|.|+.|..|.+ +.+ ...+|.||+.+..+|.+|..|+-|||.|.+.+.
T Consensus 227 p~r~~i~--~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~-- 299 (426)
T TIGR00483 227 PLRIPIQ--DVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG---VSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSK-- 299 (426)
T ss_pred CcEEEEE--EEEecCCCeEEEEEEEccceeecCCEEEECCCC---cEEEEEEEEECCcccCEEcCCCEEEEEECCCCh--
Confidence 3344443 3676 456789999999999999999988 555 357899999999999999999999999987532
Q ss_pred hhhhcccccccCCeEEE
Q 000923 1170 QQKMFGRHFDIEDELVS 1186 (1222)
Q Consensus 1170 ~~~~~gr~f~~~d~l~s 1186 (1222)
.++..|++|..
T Consensus 300 ------~~i~rG~vl~~ 310 (426)
T TIGR00483 300 ------KDIRRGDVCGH 310 (426)
T ss_pred ------hhcccceEEec
Confidence 24666776654
No 489
>PLN03127 Elongation factor Tu; Provisional
Probab=94.23 E-value=0.21 Score=60.96 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=61.3
Q ss_pred cccc-CCCCeEEEEEEEeeeeecCCCeeec---CCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhccc
Q 000923 1101 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP---QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGR 1176 (1222)
Q Consensus 1101 ~vf~-~~~~~IaG~~V~~G~l~~g~~i~v~---~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr 1176 (1222)
.+|+ ...+.|+..+|..|+|++|..|.+. .+. -...+|.||+.+++.|.++..|+-|||.|.+.+. .
T Consensus 268 ~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g-~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~--------~ 338 (447)
T PLN03127 268 DVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGG-PLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKR--------E 338 (447)
T ss_pred EEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCC-cEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCH--------H
Confidence 3665 4568899999999999999999873 111 2468999999999999999999999999987542 2
Q ss_pred ccccCCeEEEc
Q 000923 1177 HFDIEDELVSH 1187 (1222)
Q Consensus 1177 ~f~~~d~l~s~ 1187 (1222)
++..|++|...
T Consensus 339 ~i~rG~Vl~~~ 349 (447)
T PLN03127 339 DVQRGQVICKP 349 (447)
T ss_pred HCCCccEEecC
Confidence 46667777553
No 490
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=0.2 Score=59.73 Aligned_cols=68 Identities=22% Similarity=0.188 Sum_probs=39.8
Q ss_pred cCCeEeecCCC--chhhHHHHH----hhcccCceeEEEecccCCCC--hhHHHHHHHHHhcCCce---EEEEeeecccc
Q 000923 694 VPGLLVIDTPG--HESFTNLRS----RGSGLCDIAILVVDIMHGLE--PQTIESLNLLKMRNTEF---IVALNKVDRLY 761 (1222)
Q Consensus 694 ~~~i~~IDTPG--he~F~~~~~----rg~~~aD~aILVVDa~dGv~--~qT~e~l~~lk~~~vP~---IVviNKiDl~~ 761 (1222)
+..+.+|||+| |.+-.-|+. .-...+|.+|+|--|.-|-. .|....-..+..+..|. -|+|+|+|.++
T Consensus 466 gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVD 544 (587)
T ss_pred CCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchh
Confidence 44699999999 433322222 12456899999977654432 23333333344444443 46899999873
No 491
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=94.20 E-value=0.26 Score=48.06 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=34.9
Q ss_pred cccccceEEEEEEEc--------CceeEEEEEEEeeeecCCCEEEEc
Q 000923 852 RNELQCTVLEVKVIE--------GHGTTIDVVLVNGVLHEGDQIVVC 890 (1222)
Q Consensus 852 ~~~~~~~VlEv~~~~--------g~G~v~~~~V~~GtLk~GD~ivv~ 890 (1222)
..++.+.|..+|.+. .+|.|+.+.|.+|+|+.||.|-|.
T Consensus 3 ~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIr 49 (113)
T cd03688 3 TSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIR 49 (113)
T ss_pred CCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEe
Confidence 457788999999987 899999999999999999999665
No 492
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.13 E-value=0.082 Score=54.01 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.1
Q ss_pred EEEEEccCCCCchhhhhhhcCC
Q 000923 634 ICCIMGHVDTGKTKLLDCIRGT 655 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~~~ 655 (1222)
+++|+|++|+|||||+..|...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH
Confidence 3789999999999999998643
No 493
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=0.056 Score=61.56 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.4
Q ss_pred CEEEEEccCCCCchhhhhhhcCCc
Q 000923 633 PICCIMGHVDTGKTKLLDCIRGTN 656 (1222)
Q Consensus 633 ~~V~IvG~vdsGKTTLl~~L~~~~ 656 (1222)
.+|+++|.-|+|||||+..|...+
T Consensus 189 ~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhccC
Confidence 368999999999999999887543
No 494
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=94.06 E-value=0.18 Score=60.59 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=59.6
Q ss_pred cccc-CCCCeEEEEEEEeeeeecCCCeeecC-CeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhccccc
Q 000923 1101 CVFN-KKDPIVLGVDVVEGIAKVGTPICIPQ-RDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1178 (1222)
Q Consensus 1101 ~vf~-~~~~~IaG~~V~~G~l~~g~~i~v~~-~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f 1178 (1222)
.+|+ ...+.|+..+|..|+|++|..|.+.. +. -...+|.||+.+..+|.++..|+-|||.|.+.+. ..+
T Consensus 217 ~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~-~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~--------~~i 287 (394)
T TIGR00485 217 DVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKD-TRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKR--------EEI 287 (394)
T ss_pred EEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCC-CcEEEEEEEEECCeEEEEECCCCEEEEEeCCccH--------HHC
Confidence 3665 45678999999999999999998732 11 1247899999999999999999999999987532 246
Q ss_pred ccCCeEEE
Q 000923 1179 DIEDELVS 1186 (1222)
Q Consensus 1179 ~~~d~l~s 1186 (1222)
..||+|..
T Consensus 288 ~rG~vl~~ 295 (394)
T TIGR00485 288 ERGMVLAK 295 (394)
T ss_pred CccEEEec
Confidence 66777644
No 495
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.92 E-value=0.032 Score=64.00 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=20.9
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCC
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGT 655 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~ 655 (1222)
+..+|+|+|++|+||||++..|...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988643
No 496
>PTZ00121 MAEBL; Provisional
Probab=93.81 E-value=0.039 Score=71.78 Aligned_cols=7 Identities=29% Similarity=0.377 Sum_probs=3.0
Q ss_pred hhhhhhc
Q 000923 110 SAFELLE 116 (1222)
Q Consensus 110 ~~~~~~~ 116 (1222)
++|..|.
T Consensus 1008 fsfTALs 1014 (2084)
T PTZ00121 1008 FSFTALT 1014 (2084)
T ss_pred hhhhhcc
Confidence 3444444
No 497
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=93.80 E-value=0.13 Score=62.52 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=60.7
Q ss_pred cccc-CCCCeEEEEEEEeeeeecCCCeee-cCCeEEEEEeeechhcccccccccccCceEEEEEccCCchhhhhhccccc
Q 000923 1101 CVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1178 (1222)
Q Consensus 1101 ~vf~-~~~~~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~e~~kG~EcgI~i~~~n~~~~~~~~gr~f 1178 (1222)
.+|+ ...+.|+..+|..|+|++|..|.+ +.+. .++|.||+.+..+|..|..|+-|||.|.+.+. .++
T Consensus 232 ~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~--------~~i 300 (425)
T PRK12317 232 DVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGV---VGEVKSIEMHHEELPQAEPGDNIGFNVRGVGK--------KDI 300 (425)
T ss_pred EEEeeCCCeEEEEEEEeeccEecCCEEEECCCCC---eEEEEEEEECCcccCEECCCCeEEEEECCCCH--------HHc
Confidence 3666 456789999999999999999988 4552 57999999999999999999999999987642 245
Q ss_pred ccCCeEEE
Q 000923 1179 DIEDELVS 1186 (1222)
Q Consensus 1179 ~~~d~l~s 1186 (1222)
..|++|..
T Consensus 301 ~rG~vl~~ 308 (425)
T PRK12317 301 KRGDVCGH 308 (425)
T ss_pred cCccEecC
Confidence 66777654
No 498
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.74 E-value=0.047 Score=55.26 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=18.5
Q ss_pred EEEEEccCCCCchhhhhhhc
Q 000923 634 ICCIMGHVDTGKTKLLDCIR 653 (1222)
Q Consensus 634 ~V~IvG~vdsGKTTLl~~L~ 653 (1222)
+|.|+|++|+|||||+..|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999985
No 499
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=93.73 E-value=0.35 Score=45.03 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=53.4
Q ss_pred ceEEEEEEEcCceeEEEEEEEeeeecCCCEEEEccCCCc-eeeeeeeccCCCCCcceeeeeeeeehhhhccc---cCcEE
Q 000923 857 CTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKI 932 (1222)
Q Consensus 857 ~~VlEv~~~~g~G~v~~~~V~~GtLk~GD~ivv~g~~g~-~~~~Ir~ll~p~p~~~~rvk~~~~~~~ev~aa---~g~~i 932 (1222)
+.|..+|.+.+.|+++.++|.+|+|++|+.+.+++.+.. ..+. +.+++.+...+..+ ..+-+
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~--------------i~sl~~~~~~v~~a~~G~ecgi 68 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGK--------------ISSLKRFKDDVKEVKKGYECGI 68 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEE--------------EEEEEEcCcccCEECCCCEEEE
Confidence 567888888888999999999999999999988765311 1223 34444445554433 44666
Q ss_pred eecCcccccCCCceE
Q 000923 933 TAQGLEHAIAGTGLY 947 (1222)
Q Consensus 933 ~~~gL~~~~aG~~l~ 947 (1222)
.+.+++....|+.+.
T Consensus 69 ~l~~~~d~~~Gdvi~ 83 (84)
T cd03692 69 TLENFNDIKVGDIIE 83 (84)
T ss_pred EEeCcccCCCCCEEE
Confidence 777888777787653
No 500
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.72 E-value=0.89 Score=56.61 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.5
Q ss_pred CCCEEEEEccCCCCchhhhhhhcCC
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGT 655 (1222)
Q Consensus 631 R~~~V~IvG~vdsGKTTLl~~L~~~ 655 (1222)
+.-+|+|+|+.|+|||||+..|.+.
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~ 371 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGE 371 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 4456999999999999999999654
Done!