Query 000923
Match_columns 1222
No_of_seqs 592 out of 4367
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 17:47:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000923.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_690-693//hhsearch_pdb/000923hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g7s_A Translation initiation 1.0 1 1 854.4 43.7 577 629-1221 2-583 (594)
2 1zo1_I IF2, translation initia 1.0 1 1 675.7 11.7 473 630-1191 2-497 (501)
3 3izy_P Translation initiation 1.0 1 1 659.2 12.4 471 630-1187 2-536 (537)
4 3j25_A Tetracycline resistance 1.0 1 1 289.5 1.8 262 629-904 1-297 (638)
5 3vqt_A RF-3, peptide chain rel 1.0 1 1 287.3 19.2 276 626-947 27-397 (548)
6 4fn5_A EF-G 1, elongation fact 1.0 1 1 284.1 15.8 291 627-948 10-402 (709)
7 3j2k_7 ERF3, eukaryotic polype 1.0 1 1 271.6 23.9 262 631-953 16-328 (439)
8 3mca_A HBS1, elongation factor 1.0 1 1 271.2 14.6 255 632-952 177-489 (592)
9 3avx_A Elongation factor TS, e 1.0 1 1 266.5 20.5 259 631-952 295-581 (1289)
10 1wb1_A Translation elongation 1.0 1 1 266.3 16.1 255 628-948 15-280 (482)
No 1
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=1.00 E-value=1 Score=854.43 Aligned_cols=577 Identities=37% Similarity=0.668 Sum_probs=519.4
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHCCC--CCCCCCCCEEEECCCCCH
Q ss_conf 378988999846887810031001197101255574147520368203321000010113--444456882864499904
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHE 706 (1222)
Q Consensus 629 ~~R~~~V~IiG~vdsGKTTLl~~L~~~~v~~~e~~gIT~~ig~~~~~~~~~~~~~~~~~~--~~~~~~~~i~iIDTPGh~ 706 (1222)
++|+|+|+|+||+|||||||+++|++..+..++.+|+|++++.+++++.........+.. ...+..+.++|||||||.
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEECHHHHHCCCCCCCCCCCCCCCCEEEEECCCCH
T ss_conf 98881999999999739999999966667656678600213719986201121024323553222554888999897937
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 45999983114676139984155798753799999988049925999831035567655788038999997559999999
Q 000923 707 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 786 (1222)
Q Consensus 707 ~f~~~~~~~~~~aD~aILVVDa~~Gv~~qT~e~l~~l~~~~iP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~~~~~~ 786 (1222)
+|..++.+++..+|++|||||+++|+++||+++|.++...++|+||++||||+...|....+.++.+.+..+...++..|
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~ 161 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 89999997775399999999799885476799999999749809999625666433333347746899987678888877
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH--HCCCCCCCEEEEEEE
Q ss_conf 999999999999808841233102357984159975787798912489999998788788753--013433104889999
Q 000923 787 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL--TFRNELQCTVLEVKV 864 (1222)
Q Consensus 787 ~~~i~~i~~~l~e~Gl~~e~~~~~~~~g~~v~ivpvSA~tG~GI~eLl~~l~~~~~~~l~e~l--~~~~~~~~~VlEv~~ 864 (1222)
...+..+...|.+.|+..+.|+....++..++++|+||++|.||.+|++++..+++.++...+ ....++++.|++++.
T Consensus 162 ~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~ 241 (594)
T 1g7s_A 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKE 241 (594)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEEEEE
T ss_conf 77899999999875861678998875167622898764678882557899975340000234124557885048999998
Q ss_pred ECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCEE-EEEEEEEHHHHCCCCCCEEEECCCCCCCCC
Q ss_conf 8285049999998106527989987167896056643103899883002-200232101001125727842476534579
Q 000923 865 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGIKITAQGLEHAIAG 943 (1222)
Q Consensus 865 ~~g~G~vv~~~V~~G~Lk~GD~Ivi~g~~g~~v~~Ir~ll~p~p~~~~r-v~~~~~~~~ev~aa~g~~i~~~gL~~~~aG 943 (1222)
++|.|++++++|++|+|+.||.|++++++++..++|++|+.|+|+.+++ ..+.+...+++.+++|+++++.+|+.+.+|
T Consensus 242 d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~G 321 (594)
T 1g7s_A 242 ETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAG 321 (594)
T ss_dssp ETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTBCTT
T ss_pred ECCCEEEEEEEEEECEEEECCEEEECCCCCCEEEEEEEEEECCCCCHHHHCCCCCEECCEECCCCCCEEEECCCCCCCCC
T ss_conf 07957999999962879619999988889845689869980266213331357856813885799809997466788999
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHH
Q ss_conf 83599299850899999999989998753101487459970884539999988246971333787561855421287897
Q 000923 944 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1023 (1222)
Q Consensus 944 ~~l~v~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gvivKadt~GSlEAi~~~L~~~~~~i~V~~~~VG~It~~DV~~A~ 1023 (1222)
++|.++.++. .+.+..++++..+ .+.....|++|||||+||||||+++|.. .+|+|++++||+||++||++|+
T Consensus 322 d~l~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~vkad~~gs~eal~~~l~~--~~~~v~~~~vg~i~~~dv~~a~ 394 (594)
T 1g7s_A 322 SPLRVVTDPE---KVREEILSEIEDI--KIDTDEAGVVVKADTLGSLEAVVKILRD--MYVPIKVADIGDVSRRDVVNAG 394 (594)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHTT--SCBCSSSCCEEEESSHHHHHHHHHHHHH--TTCCCSEEEESSBCHHHHHHHH
T ss_pred CEEEECCCHH---HHHHHHHHHHHHC--CCCCCCCCEEEEECCCCCHHHHHHHHHH--CCCCEEECCCCCCCHHHHHHHH
T ss_conf 9888159989---9999999988743--3544446479983787889999999984--7875795146888788999987
Q ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCC
Q ss_conf 54210246849999268999779999998098199825301308999999833356777764051210215776256212
Q 000923 1024 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1103 (1222)
Q Consensus 1024 ~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~~VkI~~~~IIY~Lid~~~~~l~~~~~~~~~~~~~~av~p~~~~i~~~~vf 1103 (1222)
++++++|.||+||||||+++++++.+|++.||+|++|+|||||+|+|++||.+++++.+++..+.+++||.++|++.+||
T Consensus 395 ~~~~~~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~f 474 (594)
T 1g7s_A 395 IALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVF 474 (594)
T ss_dssp HHHTTCTTSCEEEEESCCBCHHHHHHTSSSSSEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEEEE
T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEEEEEEEECCEEE
T ss_conf 43113767878999578689889999997498699877799999999998653045155544324420289999311389
Q ss_pred CCCCCEEEEEEEEEEEEECCCCEEECCCEEEEEEEEECHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCE
Q ss_conf 68998389999873056229976405980999775400011365435200386289998059943343201642356886
Q 000923 1104 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDE 1183 (1222)
Q Consensus 1104 ~~~~p~IaG~~V~~G~l~~g~~i~v~~~~~i~~G~I~Sik~~k~~V~ea~kG~e~gI~i~~~n~~~~~~~~gr~f~~~D~ 1183 (1222)
+.++|+||||+|++|+|++|+++|+|++ +|.|+|.||+|++++|++|++|+||||+|+|| ++||||++||+
T Consensus 475 ~~~~~~i~g~~v~~G~~~~~~~~~~~~~--~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~-------~~~~~~~~~d~ 545 (594)
T 1g7s_A 475 RQSKPAIGGVEVLTGVIRQGYPLMNDDG--ETVGTVESMQDKGENLKSASRGQKVAMAIKDA-------VYGKTIHEGDT 545 (594)
T ss_dssp ECSSSEEEEEEEEEEEEETTCEEECTTS--CEEEEEEEEEETTEEESEEETTCCEEEEEETC-------CBTTTBCTTCE
T ss_pred CCCCCEEEEEEEECCEEECCCEEEECCC--CEEEEEEHHCCCCCCCCCCCCCCEEEEEEECC-------CCCCCCCCCCE
T ss_conf 2799869999996188954985996699--37998851321584225127897899998376-------55788987989
Q ss_pred EEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99826344599999984203999899999998732089
Q 000923 1184 LVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1221 (1222)
Q Consensus 1184 l~s~i~r~~i~~l~~~~~~~l~~~~~~~~~~lk~~~~i 1221 (1222)
|||+++|++++.|+++|+++|+.++|++|.+|+++|.-
T Consensus 546 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (594)
T 1g7s_A 546 LYVDIPENHYHILKEQLSGDLTDEELDLMDKIAEIKRK 583 (594)
T ss_dssp EEECCCHHHHHTTTSCC---CCHHHHHHHHHHHHHHTT
T ss_pred EEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 99999858899999998766899999999999998563
No 2
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=1.00 E-value=1 Score=675.72 Aligned_cols=473 Identities=28% Similarity=0.427 Sum_probs=384.8
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHCCCCCCCCCCCEEEECCCCCHHHH
Q ss_conf 78988999846887810031001197101255574147520368203321000010113444456882864499904459
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 630 ~R~~~V~IiG~vdsGKTTLl~~L~~~~v~~~e~~gIT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~i~iIDTPGh~~f~ 709 (1222)
.|+|+|+|+||+|||||||+++|+...+..++.+|+|++++.+.+.+.. ..++|||||||.+|.
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~----------------~~i~~iDTPGhe~f~ 65 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN----------------GMITFLDTPGHAAFT 65 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS----------------SCCCEECCCTTTCCT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECC----------------EEEEEEECCCCHHHH
T ss_conf 9870999999999988999999976887535689703767799999899----------------899999899857889
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99983114676139984155798753799999988049925999831035567655788038999997559999999999
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 710 ~~~~~~~~~aD~aILVVDa~~Gv~~qT~e~l~~l~~~~iP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~~~~~~~~~ 789 (1222)
.++.+++..+|++|||||+++|+++||.++|.++...++|+||++||||+.. |....
T Consensus 66 ~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~-~~~~~---------------------- 122 (501)
T 1zo1_I 66 SMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE-ADPDR---------------------- 122 (501)
T ss_dssp TSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST-TCCCC----------------------
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC-CCHHH----------------------
T ss_conf 9999887538899999425667627789999988862964999997326543-57778----------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCE
Q ss_conf 99999999980884123310235798415997578779891248999999878878875301343310488999982850
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 869 (1222)
Q Consensus 790 i~~i~~~l~e~Gl~~e~~~~~~~~g~~v~ivpvSA~tG~GI~eLl~~l~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~G 869 (1222)
+...+...++.. ..|+..++++++||++|.||.+|++++..... .+.....+..++.++|++++.++|.|
T Consensus 123 ---v~~~l~~~~~~~------~~~~~~~~~v~vSAktG~gI~eLle~I~~~~~-~~~~~~~~~~~~~~~V~e~~~d~g~G 192 (501)
T 1zo1_I 123 ---VKNELSQYGILP------EEWGGESQFVHVSAKAGTGIDELLDAILLQAE-VLELKAVRKGMASGAVIESFLDKGRG 192 (501)
T ss_dssp ---TTCCCCCCCCCT------TCCSSSCEEEECCTTTCTTCTTHHHHTTTTCC-CSTTTSCCCSBCEEEEEEEEECSSSS
T ss_pred ---HHHHHHHHHHHH------HHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH-HHCCCCCCCCCCCCCEEEEEEECCCE
T ss_conf ---889998721028------87278760799864303574035555565554-32101223565543159999727928
Q ss_pred EEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEEEHHHHCCCCCCEEEECCCCC-CCCCCCEEE
Q ss_conf 4999999810652798998716789605664310389988300220023210100112572784247653-457983599
Q 000923 870 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGTGLYV 948 (1222)
Q Consensus 870 ~vv~~~V~~G~Lk~GD~Ivi~g~~g~~v~~Ir~ll~p~p~~~~rv~~~~~~~~ev~aa~g~~i~~~gL~~-~~aG~~l~v 948 (1222)
++++++|.+|+|+.||.++++ +..++||+|++++... .++ +.+|..+.+.||.. +.+|+.+++
T Consensus 193 ~v~~~~V~~Gtlk~Gd~v~~g----~~~~kVr~i~~~~g~~----------v~~--a~~g~~V~i~gl~~~~~~Gd~~~~ 256 (501)
T 1zo1_I 193 PVATVLVREGTLHKGDIVLCG----FEYGRVRAMRNELGQE----------VLE--AGPSIPVEILGLSGVPAAGDEVTV 256 (501)
T ss_dssp EEEEEEEEESBCCTTCEEEEE----BSSCEEEEECCTTTTS----------EEE--ECCSSCSSSEEECSCCCTTEEEEE
T ss_pred EEEEEEEEEEEEECCCEEEEC----CCEEEEEEEEECCCCC----------CCE--ECCCCCEEEECCCCCCCCCCEEEE
T ss_conf 999999985699059889976----5133999998048986----------758--645772799678798989998994
Q ss_pred ECCCCCHHH-------------HHHHHHHHHHHHHHHH---CCCCCCEEEEECCCCCHHHHHHHHC---CCCEEEEEEEE
Q ss_conf 299850899-------------9999999899987531---0148745997088453999998824---69713337875
Q 000923 949 VGPDDDLED-------------VKEEAMEDMKSVMSRI---DKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGI 1009 (1222)
Q Consensus 949 ~~~e~~~~~-------------~~~~~~~~~~~~~~~i---~~~~~gvivKadt~GSlEAi~~~L~---~~~~~i~V~~~ 1009 (1222)
+.++..++. +.......+..+++++ .....|++|||||+||||||+++|. +++++++|+++
T Consensus 257 ~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~~~ 336 (501)
T 1zo1_I 257 VRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGS 336 (501)
T ss_dssp ECSSCTTBCSSCBTTCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 28878988999999999999987665330699998666316874577999978867899999999861645630479981
Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCC
Q ss_conf 618554212878975421024684999926899977999999809819982530130899999983335677776-4051
Q 000923 1010 SIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-AADE 1088 (1222)
Q Consensus 1010 ~VG~It~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~~VkI~~~~IIY~Lid~~~~~l~~~~~~~~~~-~~~~ 1088 (1222)
+||+||++||++|++ +||+||+|||+++++++.+|++.||+|++|+|||||+|+|+.||.+++++.+.+ ..|.
T Consensus 337 ~vG~i~~~Dv~~a~~------~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~~~~g~ 410 (501)
T 1zo1_I 337 GVGGITETDATLAAA------SNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGL 410 (501)
T ss_dssp SSSSSHHHHSTTTCG------GGCCEEECSSCCCHHHHTTSCSSSSCEEESCCCSHHHHHTHHHHTTTSSTTCCCCCCCC
T ss_pred CCCCCCHHHHHHHHH------CCCEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 368889899998773------18879995588997899999974987999077999999999998764184256420058
Q ss_pred EEECEEEEECCCCCCCC-CCCEEEEEEEEEEEEECCCCEEE-CCCEEEEEEEEECHHCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 21021577625621268-99838999987305622997640-59809997754000113654352003862899980599
Q 000923 1089 AVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSN 1166 (1222)
Q Consensus 1089 av~p~~~~i~~~~vf~~-~~p~IaG~~V~~G~l~~g~~i~v-~~~~~i~~G~I~Sik~~k~~V~ea~kG~e~gI~i~~~n 1166 (1222)
|.+ .. +|+. +.|+||||+|++|+|++|+++|+ |++.+||.|+|.||+|++++|++|++|+||||+|++||
T Consensus 411 a~v------~~--~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ecgi~~~~~~ 482 (501)
T 1zo1_I 411 AEV------RD--VFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYN 482 (501)
T ss_dssp EEE------EE--CSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCEEEEBCCCT
T ss_pred EEE------EE--EEECCCCCEEEEEEEEECEEECCCEEEEEECCEEEEEEEEEHHCCCCCCCCEECCCCEEEEEECCCC
T ss_conf 999------99--9965999889999997088963985999708808998788113436862169889988999975857
Q ss_pred CHHHHHHCCCCCCCCCEEEECCCHH
Q ss_conf 4334320164235688699826344
Q 000923 1167 SEEQQKMFGRHFDIEDELVSHISRK 1191 (1222)
Q Consensus 1167 ~~~~~~~~gr~f~~~D~l~s~i~r~ 1191 (1222)
+|.+||+|+++...+
T Consensus 483 ----------~~~~gd~~~~~~~~~ 497 (501)
T 1zo1_I 483 ----------DVRTGDVIEVFEIIE 497 (501)
T ss_dssp ----------TCCTTCEEEECCCTT
T ss_pred ----------CCCCCCEEEEEEEEE
T ss_conf ----------799898999999999
No 3
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=1.00 E-value=1 Score=659.15 Aligned_cols=471 Identities=27% Similarity=0.386 Sum_probs=380.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHCCCCCCCCCCCEEEECCCCCHHHH
Q ss_conf 78988999846887810031001197101255574147520368203321000010113444456882864499904459
Q 000923 630 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 709 (1222)
Q Consensus 630 ~R~~~V~IiG~vdsGKTTLl~~L~~~~v~~~e~~gIT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~i~iIDTPGh~~f~ 709 (1222)
.|+|+|+|+||+|||||||+++|++..+.....+|+|++++.+.+.+.. ...++|||||||..|.
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~---------------g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS---------------GEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC---------------SSCCBCEECSSSCCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECC---------------CCEEEEEECCCHHHHH
T ss_conf 9899999999989998999999958876620179666887699999489---------------9789999898848999
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99983114676139984155798753799999988049925999831035567655788038999997559999999999
Q 000923 710 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 789 (1222)
Q Consensus 710 ~~~~~~~~~aD~aILVVDa~~Gv~~qT~e~l~~l~~~~iP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~~~~~~~~~ 789 (1222)
.++.+++..+|++|||||+++|+++||.++|.++...++|+||++||||++.. ....
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~-~~~~---------------------- 123 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEA-DPEK---------------------- 123 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTT-SCCS----------------------
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CHHH----------------------
T ss_conf 99999871198899999799986477899999998759968999943432334-2588----------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCE
Q ss_conf 99999999980884123310235798415997578779891248999999878878875301343310488999982850
Q 000923 790 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 869 (1222)
Q Consensus 790 i~~i~~~l~e~Gl~~e~~~~~~~~g~~v~ivpvSA~tG~GI~eLl~~l~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~G 869 (1222)
+...+...++..+ .|+..++++++||++|.||.+|++++..+++. +.....+..+++++|++++.++|.|
T Consensus 124 ---v~~~l~~~~~~~e------~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~-~~~~~~~~~~~~~~V~e~~~~~g~G 193 (537)
T 3izy_P 124 ---VKKELLAYDVVCE------DYGGDVQAVHVSALTGENMMALAEATIALAEM-LELKADPTGAVEGTVIESFTDKGRG 193 (537)
T ss_dssp ---SSSHHHHTTSCCC------CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT-CCCCCCSSSSEEEEEEEECCCTTCC
T ss_pred ---HHHHHHHHHHHHH------HCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf ---9999986301377------61898339999788799950478999986530-3555788788611689999848975
Q ss_pred EEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEEEHHHHC-CCCCCEEEECCCCC-CCCCCCEE
Q ss_conf 49999998106527989987167896056643103899883002200232101001-12572784247653-45798359
Q 000923 870 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-AIAGTGLY 947 (1222)
Q Consensus 870 ~vv~~~V~~G~Lk~GD~Ivi~g~~g~~v~~Ir~ll~p~p~~~~rv~~~~~~~~ev~-aa~g~~i~~~gL~~-~~aG~~l~ 947 (1222)
++++++|.+|+|+.||.++ + +...++||+|+.++. .++. +.+|..+.+.|++. +.+|+.|.
T Consensus 194 ~V~~g~V~~G~l~~Gd~v~-~---g~~~~kVr~i~~~~g-------------~~v~~A~~G~~V~i~g~~~~~~~Gd~l~ 256 (537)
T 3izy_P 194 PVTTAIIQRGTLRKGSILV-A---GKSWAKVRLMFDENG-------------RAVNEAYPSMPVGIIGWRDLPSAGDEIL 256 (537)
T ss_dssp CCEEEEEEEECCSSEEEEC-C---SSCCEEEEEEEECCC-------------CCSCCSCCSTTCCCCSSEEEEEEESSCC
T ss_pred EEEEEEEECCEEECCCEEE-E---CCCEEEEEEEECCCC-------------CCCCEECCCCEEEEECCCCCCCCCCEEE
T ss_conf 3999999668897699997-3---895499999996899-------------7976986999799978878999999999
Q ss_pred EECCCCCHHHHHH-------------------------------HHH--------HHHHHHHH--------------HHC
Q ss_conf 9299850899999-------------------------------999--------98999875--------------310
Q 000923 948 VVGPDDDLEDVKE-------------------------------EAM--------EDMKSVMS--------------RID 974 (1222)
Q Consensus 948 v~~~e~~~~~~~~-------------------------------~~~--------~~~~~~~~--------------~i~ 974 (1222)
++.++..++++.+ ... +.+...+. ..+
T Consensus 257 ~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (537)
T 3izy_P 257 EVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREKRQQQPLKPKEKLERD 336 (537)
T ss_dssp SCCSSCCCCCCSCCSSSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHHHHHHHHCTTTTCCCCCCC
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCC
T ss_conf 56875899999999999999876532133344444555677787665410110355556666532211101101210256
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHC---C-CCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 148745997088453999998824---6-971333787561855421287897542102468499992689997799999
Q 000923 975 KSGEGVCVQASTLGSLEALLEFLK---S-DAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELA 1050 (1222)
Q Consensus 975 ~~~~gvivKadt~GSlEAi~~~L~---~-~~~~i~V~~~~VG~It~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A 1050 (1222)
....++||||||+||||||.++|. + ++++++|++++||+||++||++|++ ++|+||+|||++++.++.+|
T Consensus 337 ~~~~~~iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG~i~~~Dv~~a~~------~~a~i~~fnv~~~~~~~~~a 410 (537)
T 3izy_P 337 SNVLPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAET------FHGVIYGFNVNAGNVIQQLA 410 (537)
T ss_dssp CCCCCBEEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBSCBCHHHHHHHHH------HSCCEEESSCCBCHHHHHHH
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHH------CCCEEEEECCCCCHHHHHHH
T ss_conf 642559999677360999999998568887078999983078898889999874------48869995578897899999
Q ss_pred HHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCEEECEEEEECCCCCCC--CCCCEEEEEEEEEEEEECCCCEE
Q ss_conf 9809819982530130899999983335677776-40512102157762562126--89983899998730562299764
Q 000923 1051 EELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-AADEAVFPCVLKILPNCVFN--KKDPIVLGVDVVEGIAKVGTPIC 1127 (1222)
Q Consensus 1051 ~~~~VkI~~~~IIY~Lid~~~~~l~~~~~~~~~~-~~~~av~p~~~~i~~~~vf~--~~~p~IaG~~V~~G~l~~g~~i~ 1127 (1222)
+..+|+|++|+|||+|+|+++.+|.+++++...+ .+|+|. |++.|.|+ ++.|+||||+|++|+|++++++|
T Consensus 411 ~~~~v~i~~~~iiy~l~~~~~~~~~~~l~~~~~e~~~g~a~------v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r 484 (537)
T 3izy_P 411 AKKGVKIKLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEAS------ILATFSITEGKKKVPVAGCRVQKGQIEKQKKFK 484 (537)
T ss_dssp HHHTCCCBCSCSSCCSHHHHHHHHSSSSSCSSSCCCSSEEE------EEEEESSCSSSCCSCEEEEEECSSEEESSSEEE
T ss_pred HHCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE------ECCCEEECCCCCCCCEEEEEEEECEEEECCEEE
T ss_conf 87698699927499999999999974268703788889999------958189888775671789999727286088079
Q ss_pred E-CCCEEEEEEEEECHHCCCCCCCCCCCCCEEEEEECC-CCCHHHHHHCCCCCCCCCEEEEC
Q ss_conf 0-598099977540001136543520038628999805-99433432016423568869982
Q 000923 1128 I-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG-SNSEEQQKMFGRHFDIEDELVSH 1187 (1222)
Q Consensus 1128 v-~~~~~i~~G~I~Sik~~k~~V~ea~kG~e~gI~i~~-~n~~~~~~~~gr~f~~~D~l~s~ 1187 (1222)
| |++.+||.|+|.||+|++++|++|++|+||||.|++ || +|.+||+|.++
T Consensus 485 ~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~~----------~~~~gd~ie~~ 536 (537)
T 3izy_P 485 LIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKI----------EFKVGDAIICY 536 (537)
T ss_dssp EESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSCS----------SCSCCCEEEEE
T ss_pred EECCCEEEEEEEEEHHCCCCCCCCEECCCCEEEEEECCCCC----------CCCCCCEEEEE
T ss_conf 96499899998883034258254357689889999717645----------79989789996
No 4
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=1.00 E-value=1 Score=289.46 Aligned_cols=262 Identities=20% Similarity=0.206 Sum_probs=175.9
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEC-CCCCCCHHHCCC---CCCCCCCCEEEECCCC
Q ss_conf 378988999846887810031001197101255574147520368203-321000010113---4444568828644999
Q 000923 629 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPA-ENIRERTRELKA---NATLKVPGLLVIDTPG 704 (1222)
Q Consensus 629 ~~R~~~V~IiG~vdsGKTTLl~~L~~~~v~~~e~~gIT~~ig~~~~~~-~~~~~~~~~~~~---~~~~~~~~i~iIDTPG 704 (1222)
.+|| |+|+||+|||||||+++|+...-...+.+.+. -+.++..+ ...++|.+++.. .+.|....|+||||||
T Consensus 1 kIRN--i~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~--~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 76 (638)
T 3j25_A 1 KIIN--IGVLAHVDAGKTTLTESLLYNSGAITELGSVD--KGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPG 76 (638)
T ss_dssp CCCC--CEEECCSTTSSHHHHHHHHHHHTCCSSCSSCC--CSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCC
T ss_pred CEEE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCC
T ss_conf 9569--99994899998999999999749975153212--6874568848898679768952599998998999997988
Q ss_pred CHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH---
Q ss_conf 04459999831146761399841557987537999999880499259998310355676557880389999975599---
Q 000923 705 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD--- 781 (1222)
Q Consensus 705 h~~f~~~~~~~~~~aD~aILVVDa~~Gv~~qT~e~l~~l~~~~iP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~~--- 781 (1222)
|.+|+..+.++++.+|++|||||+..|+++||..+|+++..+++|.|++|||||+.. +++...+.+....
T Consensus 77 H~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~-------a~~~~~~~~i~~~l~~ 149 (638)
T 3j25_A 77 HMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNG-------IDLSTVYQDIKEKLSA 149 (638)
T ss_dssp SSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSS-------CCSHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-------CCHHHHHHHHHHHHCC
T ss_conf 178899999999985989999968989747899999999975998289984235456-------8999999999998678
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHH-CCCCHHHHHCC----CCCCCCEEEEECCCCCCCCHHHH
Q ss_conf -----------------------999999999999999998-08841233102----35798415997578779891248
Q 000923 782 -----------------------VQNEFNMRLVQIVTQLKE-QGMNTELYYKN----KDRGETFNIVPTSAISGEGIPDL 833 (1222)
Q Consensus 782 -----------------------~~~~~~~~i~~i~~~l~e-~Gl~~e~~~~~----~~~g~~v~ivpvSA~tG~GI~eL 833 (1222)
....+......++..+.. ..+........ ...+..+|++++||+++.||..|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~L 229 (638)
T 3j25_A 150 EIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNL 229 (638)
T ss_dssp CCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 73214315763342111221566644554066778765306775666778888766402452146323434258783427
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECC
Q ss_conf 99999987887887530134331048899998285049999998106527989987167896056643103
Q 000923 834 LLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 904 (1222)
Q Consensus 834 l~~l~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~G~vv~~~V~~G~Lk~GD~Ivi~g~~g~~v~~Ir~ll 904 (1222)
|+.+..+++.+.. ....++.+.|+.+.++++.|.++.++|++|+|+.|+.+.+.......+..+..+.
T Consensus 230 Ld~i~~~~p~p~~---~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~ 297 (638)
T 3j25_A 230 IEVITNKFYSSTH---RGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSI 297 (638)
T ss_dssp HHHHHHSCCCSGG---GSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCCSSBCCCCSSC
T ss_pred HHHHHCCCCCCCC---CHHHHHCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf 6543203667510---0011112145554421158559999997386337874434567531687530124
No 5
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=1.00 E-value=1 Score=287.26 Aligned_cols=276 Identities=20% Similarity=0.261 Sum_probs=195.1
Q ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCC----------------------CCCCCCCEEEEEEEEEEECCCCCCCH
Q ss_conf 00037898899984688781003100119710----------------------12555741475203682033210000
Q 000923 626 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV----------------------QEGEAGGITQQIGATYFPAENIRERT 683 (1222)
Q Consensus 626 ~~~~~R~~~V~IiG~vdsGKTTLl~~L~~~~v----------------------~~~e~~gIT~~ig~~~~~~~~~~~~~ 683 (1222)
....+|| |+|+||+|||||||+++|+...- ...+.+|||+......+
T Consensus 27 e~~r~RN--iaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~--------- 95 (548)
T 3vqt_A 27 EAARRRT--FAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF--------- 95 (548)
T ss_dssp HHHTEEE--EEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE---------
T ss_pred CCCCCCE--EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCEEECEEEE---------
T ss_conf 1136666--99990899889999999998668632154164376655433677288987797475046999---------
Q ss_pred HHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 10113444456882864499904459999831146761399841557987537999999880499259998310355676
Q 000923 684 RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGW 763 (1222)
Q Consensus 684 ~~~~~~~~~~~~~i~iIDTPGh~~f~~~~~~~~~~aD~aILVVDa~~Gv~~qT~e~l~~l~~~~iP~IVviNKiD~~~~w 763 (1222)
.|+...|+|||||||.+|+..+.++++.+|++|||||+..|+++||...|+++..+++|.|++|||||+.
T Consensus 96 -------~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~--- 165 (548)
T 3vqt_A 96 -------PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE--- 165 (548)
T ss_dssp -------EETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC---
T ss_pred -------EECCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCH---
T ss_conf -------8799899999698827778999999975680599830588730441889999987187369887346601---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH--------------------------------------------------------
Q ss_conf 557880389999975599999999--------------------------------------------------------
Q 000923 764 KTCRNAPIVKAIKQQNTDVQNEFN-------------------------------------------------------- 787 (1222)
Q Consensus 764 ~~~~~a~~~~~l~~q~~~~~~~~~-------------------------------------------------------- 787 (1222)
.+++...+.+. ++.|.
T Consensus 166 ----~ad~~~~~~~i----~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (548)
T 3vqt_A 166 ----ALHPLDVMADI----EQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYL 237 (548)
T ss_dssp ----CCCHHHHHHHH----HHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHH
T ss_pred ----HCCHHHHHHHH----HHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf ----10266754455----5423882476772251588533057653134321042337864323232235438899988
Q ss_pred ----HHHHHHHHHHHHCCC--CHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH------HCCCCC
Q ss_conf ----999999999998088--41233102357984159975787798912489999998788788753------013433
Q 000923 788 ----MRLVQIVTQLKEQGM--NTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL------TFRNEL 855 (1222)
Q Consensus 788 ----~~i~~i~~~l~e~Gl--~~e~~~~~~~~g~~v~ivpvSA~tG~GI~eLl~~l~~~~~~~l~e~l------~~~~~~ 855 (1222)
.........+.+.+. ..+.+ ..+..+|+++.||++|.||..||+.++.+++.|..... ....++
T Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~e~~----~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~ 313 (548)
T 3vqt_A 238 GDQAEQLRMDLALLEEAGTPFDEERY----LKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAF 313 (548)
T ss_dssp GGGHHHHHHHHHHHHHHCCCCCHHHH----HTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHH----HHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88888766689887540573649999----82983102614545585899999999974799877543234558997674
Q ss_pred CCEEEEEEEE---CCCEEEEEEEEEEEEECCCCEEEECCCCC-CEEEEEEECCCCCCCCCEEEEEEEEEHHHHCC-CCCC
Q ss_conf 1048899998---28504999999810652798998716789-60566431038998830022002321010011-2572
Q 000923 856 QCTVLEVKVI---EGHGTTIDVVLVNGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIKA-AQGI 930 (1222)
Q Consensus 856 ~~~VlEv~~~---~g~G~vv~~~V~~G~Lk~GD~Ivi~g~~g-~~v~~Ir~ll~p~p~~~~rv~~~~~~~~ev~a-a~g~ 930 (1222)
.+.|+.+... +..|.+..++|++|+|+.|+.|.+...+. ..++++..+... . ..++.. .+|.
T Consensus 314 ~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~---~----------~~~v~~a~AGd 380 (548)
T 3vqt_A 314 TGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQ---D----------RTGVEEAFPGD 380 (548)
T ss_dssp EEEEEEEECC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCS---S----------CCSSCEECTTC
T ss_pred EEEEEEEECCCCCCCCCEEEEEEEECCEECCCCEEEEECCCCCCCCCHHHHHCCC---C----------CCCCCEEECCC
T ss_conf 3799999705776778769999985354458998984123330000113342056---6----------64367884698
Q ss_pred EEEECCCCCCCCCCCEE
Q ss_conf 78424765345798359
Q 000923 931 KITAQGLEHAIAGTGLY 947 (1222)
Q Consensus 931 ~i~~~gL~~~~aG~~l~ 947 (1222)
++++.||..+.+|+++.
T Consensus 381 Ivai~gl~~~~~GDTl~ 397 (548)
T 3vqt_A 381 IIGIPNHGTIKIGDTFT 397 (548)
T ss_dssp EEEEECSSCCCTTCEEE
T ss_pred EEEECCCCCCCCCCEEC
T ss_conf 99856876676378816
No 6
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=284.10 Aligned_cols=291 Identities=21% Similarity=0.205 Sum_probs=201.8
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHCCCC------------------CCCCCCCCEEEEEEEEEEECCCCCCCHHHCCC
Q ss_conf 003789889998468878100310011971------------------01255574147520368203321000010113
Q 000923 627 EENLRSPICCIMGHVDTGKTKLLDCIRGTN------------------VQEGEAGGITQQIGATYFPAENIRERTRELKA 688 (1222)
Q Consensus 627 ~~~~R~~~V~IiG~vdsGKTTLl~~L~~~~------------------v~~~e~~gIT~~ig~~~~~~~~~~~~~~~~~~ 688 (1222)
..++|| |+|+||+|||||||+++|+... ....+.+|||+......+.|....
T Consensus 10 ~~~IRN--i~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~-------- 79 (709)
T 4fn5_A 10 INRYRN--IGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSR-------- 79 (709)
T ss_dssp GGGEEE--EEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTT--------
T ss_pred HHHCEE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHCCCEEEEEEEEEEECCCC--------
T ss_conf 687729--9999489999899999999962998757604389756798499997497297603899961676--------
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 44445688286449990445999983114676139984155798753799999988049925999831035567655788
Q 000923 689 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 768 (1222)
Q Consensus 689 ~~~~~~~~i~iIDTPGh~~f~~~~~~~~~~aD~aILVVDa~~Gv~~qT~e~l~~l~~~~iP~IVviNKiD~~~~w~~~~~ 768 (1222)
..++.+.|+|||||||.+|+..+.++++.||+||||||+..|+++||...|+++...++|.|++|||||+..
T Consensus 80 -~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~------- 151 (709)
T 4fn5_A 80 -GQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQG------- 151 (709)
T ss_dssp -SCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTT-------
T ss_pred -CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-------
T ss_conf -778877999993989764089999999874858999979989756389999999975998699971666667-------
Q ss_pred CHHHHHHHH--------------------------------------------------------HHHHHHHHHHHHHH-
Q ss_conf 038999997--------------------------------------------------------55999999999999-
Q 000923 769 APIVKAIKQ--------------------------------------------------------QNTDVQNEFNMRLV- 791 (1222)
Q Consensus 769 a~~~~~l~~--------------------------------------------------------q~~~~~~~~~~~i~- 791 (1222)
+++...+.+ .....+..+-+.+.
T Consensus 152 a~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 231 (709)
T 4fn5_A 152 ANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAE 231 (709)
T ss_dssp CCHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCHHCCCEEEEEEEEEEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 66899987762204562255543557300155389875106788404457863101346378888899998878988774
Q ss_pred ---HHHHHHHHCC-CCHHHHH----CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH---------------
Q ss_conf ---9999999808-8412331----0235798415997578779891248999999878878875---------------
Q 000923 792 ---QIVTQLKEQG-MNTELYY----KNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK--------------- 848 (1222)
Q Consensus 792 ---~i~~~l~e~G-l~~e~~~----~~~~~g~~v~ivpvSA~tG~GI~eLl~~l~~~~~~~l~e~--------------- 848 (1222)
.+...+.+.+ +...... .....+..+|+++.||+++.|++.||+.++.+++.|....
T Consensus 232 ~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~ 311 (709)
T 4fn5_A 232 ANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDE 311 (709)
T ss_dssp SSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCE
T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44999999874477627777778888654002455044004467766888887886079975444301337765432222
Q ss_pred --HHCCCCCCCEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCC-CEEEEEEECCCCCCCCCEEEEEEEEEHHHHC
Q ss_conf --3013433104889999828504999999810652798998716789-6056643103899883002200232101001
Q 000923 849 --LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIK 925 (1222)
Q Consensus 849 --l~~~~~~~~~VlEv~~~~g~G~vv~~~V~~G~Lk~GD~Ivi~g~~g-~~v~~Ir~ll~p~p~~~~rv~~~~~~~~ev~ 925 (1222)
.+...|+.+.|+.+..+++.|.++.++|++|+|+.|+.|.+...+. ..++++..+.... ..++.
T Consensus 312 ~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~-------------~~~v~ 378 (709)
T 4fn5_A 312 RHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQ-------------REEIK 378 (709)
T ss_dssp ECSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSC-------------CCEES
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEECCEEEEECCE-------------EEEEE
T ss_conf 35786676157999950356777057773258988889999972399577503406763010-------------14820
Q ss_pred -CCCCCEEEECCCCCCCCCCCEEE
Q ss_conf -12572784247653457983599
Q 000923 926 -AAQGIKITAQGLEHAIAGTGLYV 948 (1222)
Q Consensus 926 -aa~g~~i~~~gL~~~~aG~~l~v 948 (1222)
+.+|.++++.||..+.+|+++.-
T Consensus 379 ~~~aGdIv~i~Gl~~~~~gdTl~~ 402 (709)
T 4fn5_A 379 EVRAGDIAALIGMKDVTTGDTLCS 402 (709)
T ss_dssp EECTTCEEEECSCSSCCTTCEEEC
T ss_pred EECCCCEEEECCCCCCCCCCEECC
T ss_conf 663787014638876763887568
No 7
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=1.00 E-value=1 Score=271.61 Aligned_cols=262 Identities=24% Similarity=0.391 Sum_probs=188.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHCCCC-------------------------------CCCCCCCCEEEEEEEEEEECCCC
Q ss_conf 89889998468878100310011971-------------------------------01255574147520368203321
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPAENI 679 (1222)
Q Consensus 631 R~~~V~IiG~vdsGKTTLl~~L~~~~-------------------------------v~~~e~~gIT~~ig~~~~~~~~~ 679 (1222)
..++|+++||+|+|||||+++|++.. ....+.+|+|++++..++.+..
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHCCCEEEEEEEEEECCC-
T ss_conf 6239999938999989999999987399766788888888875066622245543365567606943987589996198-
Q ss_pred CCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC-------HHHHHHHHHHHHCCCC-EE
Q ss_conf 000010113444456882864499904459999831146761399841557987-------5379999998804992-59
Q 000923 680 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE-------PQTIESLNLLKMRNTE-FI 751 (1222)
Q Consensus 680 ~~~~~~~~~~~~~~~~~i~iIDTPGh~~f~~~~~~~~~~aD~aILVVDa~~Gv~-------~qT~e~l~~l~~~~iP-~I 751 (1222)
..++|||||||.+|..++.+++..+|++|||||+.+|+. +||.+++.++...++| +|
T Consensus 95 ---------------~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iI 159 (439)
T 3j2k_7 95 ---------------KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 159 (439)
T ss_pred ---------------EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf ---------------57999989970788999985485689999999899784114567774389999999984998489
Q ss_pred EEEEEECCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCH
Q ss_conf 9983103556-765578803899999755999999999999999999980884123310235798415997578779891
Q 000923 752 VALNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 830 (1222)
Q Consensus 752 VviNKiD~~~-~w~~~~~a~~~~~l~~q~~~~~~~~~~~i~~i~~~l~e~Gl~~e~~~~~~~~g~~v~ivpvSA~tG~GI 830 (1222)
|++||||++. +|. ...+......+...+...|++.. ..++++|+||++|.|+
T Consensus 160 vviNK~Dl~~~~~~------------------~~~~~~i~~~~~~~l~~~g~~~~---------~~~~~i~iSA~~G~ni 212 (439)
T 3j2k_7 160 VLINKMDDPTVNWS------------------NERYEECKEKLVPFLKKVGFNPK---------KDIHFMPCSGLTGANL 212 (439)
T ss_pred EEEECCCCCCCCHH------------------HHHHHHHHHHHHHHHHHHCCCCC---------CCEEEEEEECCCCCCC
T ss_conf 97534787662257------------------99999999999999987423545---------7705999643577553
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------CCCCCCCEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEE
Q ss_conf 24899999987887887530--------1343310488999982850499999981065279899871678960566431
Q 000923 831 PDLLLLLVQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRA 902 (1222)
Q Consensus 831 ~eLl~~l~~~~~~~l~e~l~--------~~~~~~~~VlEv~~~~g~G~vv~~~V~~G~Lk~GD~Ivi~g~~g~~v~~Ir~ 902 (1222)
.++++.+.|+...++.+.+. ...++++.|.+++ .|.|+++.|+|.+|+|++||.|++++++
T Consensus 213 ~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~--~~~G~v~~G~v~~G~l~~Gd~v~~~p~~--------- 281 (439)
T 3j2k_7 213 KEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKY--KDMGTVVLGKLESGSIFKGQQLVMMPNK--------- 281 (439)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEE--CCCCEEEEEEEEEEEEECCCEEEECCCC---------
T ss_conf 11233454467267999997478976677787289999897--4997599999973479549999973589---------
Q ss_pred CCCCCCCCCEEEEEEEEEHHHHCCC-CC--CEEEECCCCCCCCCCCEEEECCCC
Q ss_conf 0389988300220023210100112-57--278424765345798359929985
Q 000923 903 LLTPHPMKELRVKGTYLHHKQIKAA-QG--IKITAQGLEHAIAGTGLYVVGPDD 953 (1222)
Q Consensus 903 ll~p~p~~~~rv~~~~~~~~ev~aa-~g--~~i~~~gL~~~~aG~~l~v~~~e~ 953 (1222)
...+|+++++++.++..| +| +.+.+.|++......+.+++.++.
T Consensus 282 -------~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~ 328 (439)
T 3j2k_7 282 -------HNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSN 328 (439)
T ss_pred -------CEEEEEEEEECCEECCEECCCCCCEEEEECCCHHHCCCCEEECCCCC
T ss_conf -------45788999778807377328985468992355643487087327999
No 8
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=271.23 Aligned_cols=255 Identities=25% Similarity=0.300 Sum_probs=179.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHCCCCC-------------------------------CCCCCCCEEEEEEEEEEECCCCC
Q ss_conf 98899984688781003100119710-------------------------------12555741475203682033210
Q 000923 632 SPICCIMGHVDTGKTKLLDCIRGTNV-------------------------------QEGEAGGITQQIGATYFPAENIR 680 (1222)
Q Consensus 632 ~~~V~IiG~vdsGKTTLl~~L~~~~v-------------------------------~~~e~~gIT~~ig~~~~~~~~~~ 680 (1222)
.++|+|+||+|+|||||+++|++... .....+|||++++...+.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~----- 251 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE----- 251 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEE-----
T ss_conf 518999858999889999999987188546788988776765187520134442253444138816975389997-----
Q ss_pred CCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCC-----C--CHHHHHHHHHHHHCCCC-EEE
Q ss_conf 000101134444568828644999044599998311467613998415579-----8--75379999998804992-599
Q 000923 681 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----L--EPQTIESLNLLKMRNTE-FIV 752 (1222)
Q Consensus 681 ~~~~~~~~~~~~~~~~i~iIDTPGh~~f~~~~~~~~~~aD~aILVVDa~~G-----v--~~qT~e~l~~l~~~~iP-~IV 752 (1222)
+....++|||||||.+|..++.+++..+|++|||||+++| + ++||.+++.++...++| +||
T Consensus 252 -----------~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIv 320 (592)
T 3mca_A 252 -----------SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320 (592)
T ss_dssp ------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEE
T ss_pred -----------ECCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf -----------199489999899828889999988865899999997887752224465557999999999839984999
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHH
Q ss_conf 983103556765578803899999755999999999999999999-9808841233102357984159975787798912
Q 000923 753 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 831 (1222)
Q Consensus 753 viNKiD~~~~w~~~~~a~~~~~l~~q~~~~~~~~~~~i~~i~~~l-~e~Gl~~e~~~~~~~~g~~v~ivpvSA~tG~GI~ 831 (1222)
++||||++. |.. ..+......+...+ ...|+.. ..+++||+||++|.||.
T Consensus 321 viNKiDl~~-~~~------------------~~~~~i~~el~~~l~~~~g~~~----------~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 321 SVNKLDLMS-WSE------------------DRFQEIKNIVSDFLIKMVGFKT----------SNVHFVPISAISGTNLI 371 (592)
T ss_dssp EEECGGGGT-TCH------------------HHHHHHHHHHHHHHTTTSCCCG----------GGEEEEEECSSSCSSSC
T ss_pred EEECCCCCC-CCH------------------HHHHHHHHHHHHHHHHHHCCCC----------CCEEEEEEECCCCCCCC
T ss_conf 996346655-437------------------8999999999999987508886----------62489997545575433
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEE
Q ss_conf --------------489999998788788753013433104889999828504999999810652798998716789605
Q 000923 832 --------------DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIV 897 (1222)
Q Consensus 832 --------------eLl~~l~~~~~~~l~e~l~~~~~~~~~VlEv~~~~g~G~vv~~~V~~G~Lk~GD~Ivi~g~~g~~v 897 (1222)
.|+..|..+.++ ......+++++|.+++.+ |.|+++.|+|.+|+|++||.|++++.+.
T Consensus 372 e~~~~~~~~w~~g~~Lle~l~~~~pp----~~~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~--- 443 (592)
T 3mca_A 372 QKDSSDLYKWYKGPTLLSALDQLVPP----EKPYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQE--- 443 (592)
T ss_dssp SCCCCGGGGTCCSCCHHHHHHTSCCC----SCTTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTE---
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCC----CCCCCCCCHHEEEEEEEC-CCEEEEEEEEEEEEECCCCEEEECCCCC---
T ss_conf 45432212235407899999752065----555555600124689955-9829999999413673698899916994---
Q ss_pred EEEEECCCCCCCCCEEEEEEEEEHHHHC-CC-CCCE--EEECCCCCCCCCCCEEEECCC
Q ss_conf 6643103899883002200232101001-12-5727--842476534579835992998
Q 000923 898 TTIRALLTPHPMKELRVKGTYLHHKQIK-AA-QGIK--ITAQGLEHAIAGTGLYVVGPD 952 (1222)
Q Consensus 898 ~~Ir~ll~p~p~~~~rv~~~~~~~~ev~-aa-~g~~--i~~~gL~~~~aG~~l~v~~~e 952 (1222)
..+|+++++++..+. .| +|.. +.+.|++......+.+++.+.
T Consensus 444 -------------~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~ 489 (592)
T 3mca_A 444 -------------DAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYE 489 (592)
T ss_dssp -------------EEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSS
T ss_pred -------------EEEEEEEEECCCCCCCEECCCCEEEEEECCCCCCCCCEEEEECCCC
T ss_conf -------------6899999975845763406898899997253002331378852699
No 9
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=1.00 E-value=1 Score=266.47 Aligned_cols=259 Identities=24% Similarity=0.331 Sum_probs=181.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHCCCCCC----------------CCCCCCEEEEEEEEEEECCCCCCCHHHCCCCCCCCC
Q ss_conf 8988999846887810031001197101----------------255574147520368203321000010113444456
Q 000923 631 RSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKV 694 (1222)
Q Consensus 631 R~~~V~IiG~vdsGKTTLl~~L~~~~v~----------------~~e~~gIT~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1222)
..++|+++||+|+|||||+++|++.... ....+|+|+.+....+.. ..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~----------------~~ 358 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT----------------PT 358 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC----------------SS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC----------------CC
T ss_conf 70489998289988999999998640235643233322356642132375368888999747----------------98
Q ss_pred CCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCCCHHHH
Q ss_conf 8828644999044599998311467613998415579875379999998804992-599983103556765578803899
Q 000923 695 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVK 773 (1222)
Q Consensus 695 ~~i~iIDTPGh~~f~~~~~~~~~~aD~aILVVDa~~Gv~~qT~e~l~~l~~~~iP-~IVviNKiD~~~~w~~~~~a~~~~ 773 (1222)
..++|||||||.+|..++.+++..+|++|||||+++|+++||.++|.++...++| +||++||||++.. ...
T Consensus 359 ~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d------~e~-- 430 (1289)
T 3avx_A 359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD------EEL-- 430 (1289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCC------HHH--
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC------HHH--
T ss_conf 799999898839999999998843999999981876675889999999987599869999851454210------346--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC--------CCHHHHHHHHHHHHHHHH
Q ss_conf 999755999999999999999999980884123310235798415997578779--------891248999999878878
Q 000923 774 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG--------EGIPDLLLLLVQWTQKTM 845 (1222)
Q Consensus 774 ~l~~q~~~~~~~~~~~i~~i~~~l~e~Gl~~e~~~~~~~~g~~v~ivpvSA~tG--------~GI~eLl~~l~~~~~~~l 845 (1222)
+......+...+...|+. +..++++++||++| .||..|++.|..+++.+.
T Consensus 431 ------------le~i~eEi~elLk~~G~~----------~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~ 488 (1289)
T 3avx_A 431 ------------LELVEMEVRELLSQYDFP----------GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPE 488 (1289)
T ss_dssp ------------HHHHHHHHHHHHHHTTSC----------TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCC
T ss_pred ------------HHHHHHHHHHHHHHCCCC----------CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf ------------899999999999851346----------6631599987224777786300363466767765368875
Q ss_pred HHHHHCCCCCCCEEEEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEEEHHHHC
Q ss_conf 87530134331048899998285049999998106527989987167896056643103899883002200232101001
Q 000923 846 VEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 925 (1222)
Q Consensus 846 ~e~l~~~~~~~~~VlEv~~~~g~G~vv~~~V~~G~Lk~GD~Ivi~g~~g~~v~~Ir~ll~p~p~~~~rv~~~~~~~~ev~ 925 (1222)
.....|++++|.+++.++|+|++++|+|.+|+|+.||.|+++|.++....+|+ ++++++..+.
T Consensus 489 ---r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVk--------------sI~~~~~~v~ 551 (1289)
T 3avx_A 489 ---RAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCT--------------GVEMFRKLLD 551 (1289)
T ss_dssp ---CGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEE--------------EEECSSCEES
T ss_pred ---CCCCCCEEEECCCCCCCCCCCEEEEEEEECCEEECCCEEEEECCCCCEEEEEE--------------EEEECCCEEE
T ss_conf ---44212103300000012588679999996638961988999368996369997--------------8863692453
Q ss_pred CC-CCC--EEEECCCCCCCCCCCEEEECCC
Q ss_conf 12-572--7842476534579835992998
Q 000923 926 AA-QGI--KITAQGLEHAIAGTGLYVVGPD 952 (1222)
Q Consensus 926 aa-~g~--~i~~~gL~~~~aG~~l~v~~~e 952 (1222)
.+ +|. .+.+.|++......+.+++.+.
T Consensus 552 eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 552 EGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp EEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred EEECCCCCEEEEEECCHHCCCCCCEEECCC
T ss_conf 872687423676401051188625896599
No 10
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=1.00 E-value=1 Score=266.31 Aligned_cols=255 Identities=24% Similarity=0.373 Sum_probs=188.1
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHCCCC-------CCCCCCCCEEEEEEEEEEECCCCCCCHHHCCCCCCCCCCCEEEE
Q ss_conf 03789889998468878100310011971-------01255574147520368203321000010113444456882864
Q 000923 628 ENLRSPICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVI 700 (1222)
Q Consensus 628 ~~~R~~~V~IiG~vdsGKTTLl~~L~~~~-------v~~~e~~gIT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~i~iI 700 (1222)
..++.++|+++||+|+|||||+++|++.. ......+|+|++++..++.+.. ..++||
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~----------------~~i~ii 78 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN----------------YRITLV 78 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT----------------EEEEEC
T ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEEEECC----------------EEEEEE
T ss_conf 3389889999999998299999999788764112555223357617830569999899----------------799999
Q ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 49990445999983114676139984155798753799999988049925999831035567655788038999997559
Q 000923 701 DTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 780 (1222)
Q Consensus 701 DTPGh~~f~~~~~~~~~~aD~aILVVDa~~Gv~~qT~e~l~~l~~~~iP~IVviNKiD~~~~w~~~~~a~~~~~l~~q~~ 780 (1222)
|||||.+|..++.+++..+|++|||||+++|+++||.+++.++...++|+||++||||+.. ..
T Consensus 79 DtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~-------~~---------- 141 (482)
T 1wb1_A 79 DAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG-------TE---------- 141 (482)
T ss_dssp CCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC-------HH----------
T ss_pred ECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-------CH----------
T ss_conf 8988699999999888449999999956878657789999999984998899997877322-------01----------
Q ss_pred HHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99999999999999999980-88412331023579841599757877989124899999987887887530134331048
Q 000923 781 DVQNEFNMRLVQIVTQLKEQ-GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTV 859 (1222)
Q Consensus 781 ~~~~~~~~~i~~i~~~l~e~-Gl~~e~~~~~~~~g~~v~ivpvSA~tG~GI~eLl~~l~~~~~~~l~e~l~~~~~~~~~V 859 (1222)
.+......+...+... ++ ..++++++||++|.||.+|+++|..+++.+... .....+++++|
T Consensus 142 ----~~~~~~~~l~~~l~~~~~~------------~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~-~~~~~~~~~~v 204 (482)
T 1wb1_A 142 ----EIKRTEMIMKSILQSTHNL------------KNSSIIPISAKTGFGVDELKNLIITTLNNAEII-RNTESYFKMPL 204 (482)
T ss_dssp ----HHHHHHHHHHHHHHHSSSG------------GGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCC-CCSSSCCBCBC
T ss_pred ----HHHHHHHHHHHHHHHHCCC------------CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCC
T ss_conf ----5899999999998641355------------563199987767988799999998761276445-65212555311
Q ss_pred EEEEEECCCEEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEEEHHHHCCC-CC--CEEEECC
Q ss_conf 89999828504999999810652798998716789605664310389988300220023210100112-57--2784247
Q 000923 860 LEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA-QG--IKITAQG 936 (1222)
Q Consensus 860 lEv~~~~g~G~vv~~~V~~G~Lk~GD~Ivi~g~~g~~v~~Ir~ll~p~p~~~~rv~~~~~~~~ev~aa-~g--~~i~~~g 936 (1222)
.+++.++|.|+++.++|.+|+|+.||.+++.+.+ ...+ |+++++++..+..+ +| +.+.+.|
T Consensus 205 ~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~--~~~~--------------V~~i~~~~~~v~~a~~G~~v~~~l~~ 268 (482)
T 1wb1_A 205 DHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN--MSTK--------------VRSIQYFKESVMEAKAGDRVGMAIQG 268 (482)
T ss_dssp SCEECCSSCCCEECCCCCBSCCCSSEEECCTTTC--CCEE--------------ECCBCGGGSCBCCCCSSCCCCEECSS
T ss_pred EEEEEECCCCEEEEEEEEEEEEEECCEEEECCCC--CEEE--------------EEEEEECCEEEEEECCCCEEEEEECC
T ss_conf 1589964883499999987699609999999999--6899--------------92999999085072599989999669
Q ss_pred CCCCCCCCCEEE
Q ss_conf 653457983599
Q 000923 937 LEHAIAGTGLYV 948 (1222)
Q Consensus 937 L~~~~aG~~l~v 948 (1222)
++......+.++
T Consensus 269 ~~~~~i~~Gdvl 280 (482)
T 1wb1_A 269 VDAKQIYRGXIL 280 (482)
T ss_dssp CCSSCCCSSCBC
T ss_pred CCHHHCCCCCEE
T ss_conf 978631565267
Done!